Query 015058
Match_columns 414
No_of_seqs 116 out of 1450
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2941 Beta-1,4-mannosyltrans 100.0 2.2E-63 4.9E-68 488.4 33.7 377 1-411 9-396 (444)
2 PLN02275 transferase, transfer 100.0 2.5E-47 5.5E-52 385.2 38.5 343 1-398 1-343 (371)
3 cd03816 GT1_ALG1_like This fam 100.0 8.2E-45 1.8E-49 372.6 38.7 347 3-398 2-351 (415)
4 PRK10307 putative glycosyl tra 100.0 9.7E-36 2.1E-40 302.7 36.6 305 19-398 19-341 (412)
5 cd03796 GT1_PIG-A_like This fa 100.0 1.9E-32 4.2E-37 277.9 32.3 281 20-399 19-304 (398)
6 TIGR03088 stp2 sugar transfera 100.0 5.5E-32 1.2E-36 270.0 31.9 300 3-399 1-307 (374)
7 TIGR03449 mycothiol_MshA UDP-N 100.0 9.3E-32 2E-36 271.5 32.2 298 19-399 24-337 (405)
8 PLN02871 UDP-sulfoquinovose:DA 100.0 2E-31 4.2E-36 277.0 30.4 286 18-399 77-366 (465)
9 cd03805 GT1_ALG2_like This fam 100.0 1.2E-30 2.6E-35 260.8 30.2 313 5-400 2-335 (392)
10 cd03794 GT1_wbuB_like This fam 100.0 1.9E-29 4.2E-34 243.3 35.0 306 16-399 15-334 (394)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 1.2E-29 2.7E-34 262.0 33.7 305 20-399 31-375 (439)
12 cd04955 GT1_like_6 This family 100.0 9.4E-30 2E-34 249.2 31.0 279 22-399 22-303 (363)
13 PRK15427 colanic acid biosynth 100.0 1E-29 2.2E-34 260.9 32.6 215 98-399 115-339 (406)
14 cd03812 GT1_CapH_like This fam 100.0 1.4E-29 3E-34 247.9 30.8 276 24-399 21-301 (358)
15 cd04962 GT1_like_5 This family 100.0 2.7E-29 5.8E-34 248.0 30.1 295 6-398 2-304 (371)
16 cd03819 GT1_WavL_like This fam 100.0 5E-29 1.1E-33 243.8 29.5 274 21-400 16-300 (355)
17 cd05844 GT1_like_7 Glycosyltra 100.0 5.5E-29 1.2E-33 245.4 29.6 218 98-398 79-304 (367)
18 cd03800 GT1_Sucrose_synthase T 100.0 1.5E-28 3.2E-33 244.1 31.1 297 20-398 26-336 (398)
19 TIGR02149 glgA_Coryne glycogen 100.0 1.2E-28 2.6E-33 246.0 30.4 282 21-398 22-314 (388)
20 cd03795 GT1_like_4 This family 100.0 4.3E-28 9.2E-33 236.5 31.3 274 23-398 22-299 (357)
21 PRK00654 glgA glycogen synthas 100.0 2.5E-28 5.5E-33 254.3 30.5 225 100-398 117-390 (466)
22 PRK15179 Vi polysaccharide bio 100.0 3.3E-28 7.1E-33 264.6 32.5 228 98-404 397-639 (694)
23 cd03807 GT1_WbnK_like This fam 100.0 9.4E-28 2E-32 230.2 31.2 294 6-399 2-303 (365)
24 cd03817 GT1_UGDG_like This fam 100.0 8.2E-28 1.8E-32 231.9 30.8 293 17-399 16-313 (374)
25 cd04951 GT1_WbdM_like This fam 100.0 1.1E-27 2.3E-32 233.9 31.1 215 99-399 77-297 (360)
26 TIGR02468 sucrsPsyn_pln sucros 100.0 1.8E-27 3.9E-32 265.0 33.5 322 23-405 203-620 (1050)
27 cd03818 GT1_ExpC_like This fam 100.0 2.5E-27 5.3E-32 240.1 31.3 300 19-398 11-334 (396)
28 cd03799 GT1_amsK_like This is 100.0 4.9E-27 1.1E-31 228.8 32.2 276 17-399 13-296 (355)
29 cd03808 GT1_cap1E_like This fa 100.0 5.9E-27 1.3E-31 223.6 30.8 287 9-399 4-298 (359)
30 TIGR02095 glgA glycogen/starch 100.0 2.4E-27 5.2E-32 246.7 29.9 225 100-398 127-399 (473)
31 PRK15484 lipopolysaccharide 1, 100.0 5.9E-27 1.3E-31 237.8 31.8 279 17-399 19-312 (380)
32 cd03814 GT1_like_2 This family 100.0 5.2E-27 1.1E-31 227.0 29.1 283 17-399 16-301 (364)
33 cd03801 GT1_YqgM_like This fam 100.0 1E-26 2.2E-31 221.0 29.3 290 17-399 16-310 (374)
34 PRK14098 glycogen synthase; Pr 100.0 1.4E-26 3.1E-31 243.5 32.0 226 100-399 140-416 (489)
35 cd03798 GT1_wlbH_like This fam 100.0 2.5E-26 5.3E-31 219.8 29.3 219 99-399 91-313 (377)
36 PRK15490 Vi polysaccharide bio 100.0 1.2E-26 2.6E-31 244.9 28.1 229 98-405 277-521 (578)
37 cd03806 GT1_ALG11_like This fa 100.0 4.2E-26 9.1E-31 235.0 31.4 298 17-398 15-358 (419)
38 cd03811 GT1_WabH_like This fam 100.0 7.9E-26 1.7E-30 214.9 30.5 215 99-399 79-298 (353)
39 PLN02939 transferase, transfer 100.0 8.4E-26 1.8E-30 248.9 34.1 226 100-399 609-891 (977)
40 PLN02846 digalactosyldiacylgly 100.0 4.8E-26 1E-30 237.5 30.4 300 2-398 2-334 (462)
41 cd03813 GT1_like_3 This family 100.0 9.3E-27 2E-31 243.2 25.1 218 99-399 171-405 (475)
42 PRK14099 glycogen synthase; Pr 100.0 8.5E-26 1.8E-30 237.4 32.4 224 100-398 132-403 (485)
43 cd03791 GT1_Glycogen_synthase_ 100.0 7.6E-26 1.7E-30 234.2 31.5 229 99-399 127-405 (476)
44 cd03820 GT1_amsD_like This fam 100.0 1.3E-25 2.9E-30 213.4 30.3 263 23-398 21-286 (348)
45 PLN02316 synthase/transferase 100.0 1.6E-25 3.5E-30 249.9 35.4 211 100-399 708-954 (1036)
46 PRK09922 UDP-D-galactose:(gluc 100.0 2.9E-26 6.3E-31 229.7 26.2 199 99-399 82-293 (359)
47 cd03821 GT1_Bme6_like This fam 100.0 2.9E-25 6.3E-30 213.7 31.9 226 99-400 85-317 (375)
48 cd03792 GT1_Trehalose_phosphor 99.9 8.3E-26 1.8E-30 226.6 27.0 214 99-398 83-307 (372)
49 cd03822 GT1_ecORF704_like This 99.9 4.8E-25 1E-29 214.0 30.2 219 99-398 74-303 (366)
50 cd03809 GT1_mtfB_like This fam 99.9 3.4E-25 7.3E-30 214.9 27.5 218 100-399 84-307 (365)
51 cd03802 GT1_AviGT4_like This f 99.9 2.8E-25 6E-30 215.7 25.7 194 98-400 84-280 (335)
52 TIGR02470 sucr_synth sucrose s 99.9 2.1E-24 4.6E-29 236.0 32.7 317 28-405 300-692 (784)
53 cd03823 GT1_ExpE7_like This fa 99.9 3.9E-24 8.4E-29 206.1 28.9 201 99-399 94-298 (359)
54 TIGR03087 stp1 sugar transfera 99.9 1.1E-24 2.4E-29 221.1 25.6 212 99-397 102-331 (397)
55 cd03804 GT1_wbaZ_like This fam 99.9 1.8E-24 3.9E-29 214.1 23.9 280 7-399 2-295 (351)
56 PLN02501 digalactosyldiacylgly 99.9 8.4E-24 1.8E-28 226.5 30.4 296 5-399 323-653 (794)
57 PLN00142 sucrose synthase 99.9 5.2E-24 1.1E-28 233.2 29.0 321 26-405 322-715 (815)
58 KOG1111 N-acetylglucosaminyltr 99.9 7.7E-25 1.7E-29 217.5 16.3 297 8-401 4-308 (426)
59 PLN02949 transferase, transfer 99.9 3E-23 6.6E-28 217.1 28.6 171 154-398 208-388 (463)
60 cd03825 GT1_wcfI_like This fam 99.9 3.3E-23 7.1E-28 202.7 25.6 222 100-400 50-300 (365)
61 cd04946 GT1_AmsK_like This fam 99.9 4.9E-23 1.1E-27 211.1 25.8 210 100-399 126-345 (407)
62 PRK10125 putative glycosyl tra 99.9 4.3E-22 9.4E-27 204.8 30.7 297 4-399 1-341 (405)
63 TIGR02918 accessory Sec system 99.9 9.8E-23 2.1E-27 215.1 24.4 215 100-405 210-442 (500)
64 cd03785 GT1_MurG MurG is an N- 99.9 1.1E-21 2.5E-26 193.8 26.0 265 20-398 15-282 (350)
65 PRK00726 murG undecaprenyldiph 99.9 1.8E-21 3.9E-26 194.2 26.3 278 5-398 2-282 (357)
66 cd04949 GT1_gtfA_like This fam 99.9 5.1E-22 1.1E-26 197.9 22.3 218 100-405 98-328 (372)
67 cd04950 GT1_like_1 Glycosyltra 99.9 3.1E-21 6.7E-26 195.1 27.9 302 1-399 1-313 (373)
68 TIGR01133 murG undecaprenyldip 99.9 2.1E-21 4.6E-26 191.7 25.6 275 6-398 2-280 (348)
69 PRK05749 3-deoxy-D-manno-octul 99.9 1.5E-20 3.2E-25 192.7 28.3 216 99-396 122-352 (425)
70 PHA01630 putative group 1 glyc 99.9 1.6E-20 3.4E-25 188.7 20.7 170 126-398 68-243 (331)
71 PHA01633 putative glycosyl tra 99.8 2.4E-19 5.2E-24 180.7 22.8 198 106-398 50-257 (335)
72 PRK13609 diacylglycerol glucos 99.8 9.3E-19 2E-23 176.6 21.6 196 98-396 101-301 (380)
73 cd03793 GT1_Glycogen_synthase_ 99.8 2.7E-18 5.8E-23 182.1 23.7 247 100-399 147-509 (590)
74 PRK09814 beta-1,6-galactofuran 99.8 9.3E-18 2E-22 167.8 20.4 195 100-398 63-270 (333)
75 cd03788 GT1_TPS Trehalose-6-Ph 99.8 1.2E-17 2.7E-22 174.6 18.2 222 100-398 130-398 (460)
76 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 5.2E-17 1.1E-21 161.6 21.7 281 15-397 9-305 (363)
77 cd01635 Glycosyltransferase_GT 99.8 1.2E-16 2.7E-21 144.6 22.3 106 263-399 109-216 (229)
78 TIGR02400 trehalose_OtsA alpha 99.8 2.8E-17 6.1E-22 172.0 20.3 220 100-399 126-394 (456)
79 PLN02605 monogalactosyldiacylg 99.8 6.9E-17 1.5E-21 164.1 21.6 203 99-396 98-310 (382)
80 PRK00025 lpxB lipid-A-disaccha 99.7 7.6E-16 1.6E-20 154.8 22.7 201 98-394 82-286 (380)
81 PRK13608 diacylglycerol glucos 99.7 1.1E-15 2.4E-20 156.1 22.1 194 99-396 102-301 (391)
82 TIGR00236 wecB UDP-N-acetylglu 99.7 1.7E-15 3.8E-20 152.2 20.3 209 99-394 84-299 (365)
83 PF00534 Glycos_transf_1: Glyc 99.7 2.5E-16 5.5E-21 140.6 12.1 113 257-399 14-127 (172)
84 TIGR00215 lpxB lipid-A-disacch 99.7 8.6E-15 1.9E-19 149.8 21.5 270 23-398 23-296 (385)
85 PLN03063 alpha,alpha-trehalose 99.6 9.3E-15 2E-19 162.3 17.3 220 100-399 146-414 (797)
86 PF13579 Glyco_trans_4_4: Glyc 99.6 4.7E-15 1E-19 128.0 10.1 153 19-195 5-160 (160)
87 COG0438 RfaG Glycosyltransfera 99.6 1.1E-12 2.3E-17 122.3 22.2 221 102-399 84-311 (381)
88 PRK14501 putative bifunctional 99.5 1.3E-13 2.8E-18 151.9 17.9 210 100-389 132-386 (726)
89 COG0297 GlgA Glycogen synthase 99.5 1.9E-12 4.2E-17 136.3 20.7 234 100-405 129-409 (487)
90 PF13692 Glyco_trans_1_4: Glyc 99.5 8.8E-14 1.9E-18 119.5 8.1 100 259-396 3-103 (135)
91 PF13439 Glyco_transf_4: Glyco 99.5 3.4E-13 7.5E-18 118.2 11.7 168 10-201 3-177 (177)
92 TIGR02398 gluc_glyc_Psyn gluco 99.4 1.2E-11 2.7E-16 130.4 18.5 111 259-399 286-420 (487)
93 PF13477 Glyco_trans_4_2: Glyc 99.3 1.2E-10 2.6E-15 100.9 14.9 137 9-174 2-139 (139)
94 PRK12446 undecaprenyldiphospho 99.2 3.2E-09 7E-14 107.8 25.7 267 16-396 9-280 (352)
95 KOG1387 Glycosyltransferase [C 99.2 2.2E-08 4.7E-13 100.5 26.1 221 100-397 149-389 (465)
96 PF09314 DUF1972: Domain of un 99.2 4.9E-09 1.1E-13 97.8 20.1 163 17-195 15-183 (185)
97 COG0707 MurG UDP-N-acetylgluco 99.1 6.7E-08 1.5E-12 98.7 25.2 255 24-394 20-278 (357)
98 PLN03064 alpha,alpha-trehalose 99.0 1E-08 2.2E-13 115.3 19.4 218 101-400 231-499 (934)
99 KOG0853 Glycosyltransferase [C 99.0 1.9E-08 4.1E-13 105.7 19.9 195 153-406 196-415 (495)
100 TIGR03713 acc_sec_asp1 accesso 99.0 6.4E-09 1.4E-13 111.0 15.3 112 260-404 321-472 (519)
101 TIGR03492 conserved hypothetic 98.9 1.5E-07 3.3E-12 97.2 22.6 279 18-396 10-323 (396)
102 TIGR03568 NeuC_NnaA UDP-N-acet 98.9 9.7E-07 2.1E-11 90.2 25.4 293 6-394 2-306 (365)
103 PF13528 Glyco_trans_1_3: Glyc 98.8 5.7E-07 1.2E-11 88.4 19.6 89 257-398 192-280 (318)
104 TIGR03590 PseG pseudaminic aci 98.7 2.1E-06 4.5E-11 84.6 22.0 96 259-396 172-268 (279)
105 TIGR02094 more_P_ylases alpha- 98.7 9.6E-07 2.1E-11 95.9 20.7 126 253-405 385-527 (601)
106 TIGR00661 MJ1255 conserved hyp 98.5 3.3E-05 7.2E-10 77.0 23.0 48 342-398 230-277 (321)
107 PF05693 Glycogen_syn: Glycoge 98.5 8.6E-06 1.9E-10 87.5 18.1 266 101-399 142-504 (633)
108 cd03784 GT1_Gtf_like This fami 98.4 7.7E-05 1.7E-09 75.8 22.8 122 6-137 2-135 (401)
109 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.00018 3.8E-09 74.6 23.0 211 100-394 122-348 (419)
110 TIGR02919 accessory Sec system 98.2 1.9E-05 4.1E-10 82.9 13.9 89 274-397 291-380 (438)
111 PF07429 Glyco_transf_56: 4-al 98.2 8.2E-05 1.8E-09 75.4 17.8 216 99-397 76-298 (360)
112 PF02684 LpxB: Lipid-A-disacch 98.2 0.00023 5.1E-09 73.3 21.1 282 9-398 2-289 (373)
113 PRK02797 4-alpha-L-fucosyltran 98.1 0.00016 3.5E-09 72.5 17.9 215 100-397 38-259 (322)
114 TIGR01426 MGT glycosyltransfer 98.1 0.00083 1.8E-08 68.4 23.0 65 319-399 258-322 (392)
115 PF02350 Epimerase_2: UDP-N-ac 98.1 3.2E-05 7E-10 78.7 12.3 209 99-395 65-284 (346)
116 COG0763 LpxB Lipid A disacchar 98.0 0.00049 1.1E-08 70.6 19.1 280 10-396 6-291 (381)
117 PRK01021 lpxB lipid-A-disaccha 97.9 0.0013 2.8E-08 71.4 20.9 203 99-398 308-517 (608)
118 cd04299 GT1_Glycogen_Phosphory 97.9 0.001 2.2E-08 74.4 20.4 115 253-396 474-600 (778)
119 PRK10117 trehalose-6-phosphate 97.8 0.0012 2.6E-08 70.1 17.4 115 259-399 256-391 (474)
120 PLN02205 alpha,alpha-trehalose 97.7 0.0023 5E-08 72.5 19.8 101 259-389 340-460 (854)
121 TIGR02195 heptsyl_trn_II lipop 97.7 0.0054 1.2E-07 61.2 19.5 103 254-394 171-276 (334)
122 PF00982 Glyco_transf_20: Glyc 97.6 0.0032 6.8E-08 67.0 18.5 116 259-400 277-412 (474)
123 PF08323 Glyco_transf_5: Starc 97.6 9.4E-05 2E-09 71.6 6.4 81 100-184 132-233 (245)
124 COG3660 Predicted nucleoside-d 97.6 0.033 7.1E-07 55.0 22.9 205 100-400 69-277 (329)
125 PF04007 DUF354: Protein of un 97.6 0.017 3.6E-07 59.0 21.7 135 24-195 19-154 (335)
126 PRK10422 lipopolysaccharide co 97.6 0.027 5.8E-07 57.0 23.3 100 258-395 184-288 (352)
127 COG4671 Predicted glycosyl tra 97.4 0.072 1.6E-06 54.6 23.7 66 318-393 253-319 (400)
128 TIGR02201 heptsyl_trn_III lipo 97.4 0.03 6.5E-07 56.2 21.1 71 316-395 213-286 (344)
129 PHA03392 egt ecdysteroid UDP-g 97.4 0.028 6.2E-07 60.2 21.3 61 317-396 329-392 (507)
130 PF04464 Glyphos_transf: CDP-G 97.3 0.0026 5.7E-08 64.4 12.2 190 124-397 96-297 (369)
131 COG0381 WecB UDP-N-acetylgluco 97.3 0.029 6.3E-07 57.9 19.2 212 99-396 90-308 (383)
132 PF13844 Glyco_transf_41: Glyc 97.1 0.0057 1.2E-07 64.9 12.7 118 245-397 273-393 (468)
133 COG0380 OtsA Trehalose-6-phosp 97.1 0.14 2.9E-06 54.8 22.6 116 259-400 283-418 (486)
134 PF11997 DUF3492: Domain of un 97.0 0.067 1.4E-06 52.9 18.5 85 100-187 171-265 (268)
135 COG3914 Spy Predicted O-linked 96.9 0.02 4.4E-07 61.6 14.6 108 251-393 424-536 (620)
136 PRK10916 ADP-heptose:LPS hepto 96.8 0.12 2.7E-06 52.0 19.2 102 256-395 179-287 (348)
137 TIGR02193 heptsyl_trn_I lipopo 96.7 0.093 2E-06 52.0 17.2 100 257-396 179-281 (319)
138 COG0859 RfaF ADP-heptose:LPS h 96.5 0.3 6.6E-06 49.3 19.1 100 257-395 175-277 (334)
139 COG1819 Glycosyl transferases, 96.5 0.07 1.5E-06 55.7 14.7 106 253-407 233-349 (406)
140 PRK14089 ipid-A-disaccharide s 96.2 0.13 2.8E-06 52.8 14.4 62 317-395 200-261 (347)
141 TIGR03609 S_layer_CsaB polysac 96.1 1.6 3.5E-05 42.9 25.6 181 122-396 94-277 (298)
142 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.83 1.8E-05 46.1 18.4 75 317-398 183-259 (311)
143 PF08660 Alg14: Oligosaccharid 95.8 0.21 4.6E-06 46.1 12.9 65 100-180 91-160 (170)
144 cd03789 GT1_LPS_heptosyltransf 95.0 0.086 1.9E-06 51.3 8.0 98 260-395 124-224 (279)
145 PF12000 Glyco_trans_4_3: Gkyc 94.9 0.42 9.2E-06 44.3 11.7 157 32-200 2-170 (171)
146 COG1817 Uncharacterized protei 94.6 6.1 0.00013 40.3 20.3 262 13-399 5-281 (346)
147 PRK10017 colanic acid biosynth 94.5 7.6 0.00016 41.0 28.8 76 100-188 116-197 (426)
148 PF10087 DUF2325: Uncharacteri 94.3 0.13 2.9E-06 42.6 6.4 81 319-400 2-87 (97)
149 PF01075 Glyco_transf_9: Glyco 94.3 0.085 1.8E-06 50.0 5.8 102 256-395 104-209 (247)
150 PF04101 Glyco_tran_28_C: Glyc 94.3 0.019 4E-07 51.6 1.2 70 317-398 32-102 (167)
151 PF00862 Sucrose_synth: Sucros 93.4 1 2.3E-05 48.3 12.3 76 100-178 400-480 (550)
152 PLN02448 UDP-glycosyltransfera 93.1 14 0.00029 39.2 28.4 64 316-395 303-368 (459)
153 PRK10964 ADP-heptose:LPS hepto 92.6 0.49 1.1E-05 47.1 8.3 70 316-396 210-280 (322)
154 COG2327 WcaK Polysaccharide py 92.6 15 0.00033 38.4 26.5 191 120-397 117-313 (385)
155 PF13524 Glyco_trans_1_2: Glyc 91.7 0.11 2.5E-06 41.8 2.1 27 375-401 9-35 (92)
156 PF06925 MGDG_synth: Monogalac 90.7 2.2 4.9E-05 38.6 9.7 70 98-188 86-158 (169)
157 PF08288 PIGA: PIGA (GPI ancho 89.8 1.1 2.4E-05 37.2 6.2 73 53-137 13-85 (90)
158 COG4641 Uncharacterized protei 88.8 3.7 8.1E-05 42.5 10.6 60 342-402 238-301 (373)
159 PF05159 Capsule_synth: Capsul 88.3 3 6.5E-05 40.5 9.3 48 339-397 180-227 (269)
160 PLN03007 UDP-glucosyltransfera 84.4 62 0.0013 34.5 29.4 42 341-393 345-388 (482)
161 KOG3349 Predicted glycosyltran 83.3 9.7 0.00021 35.0 9.1 100 260-396 6-108 (170)
162 COG3980 spsG Spore coat polysa 79.2 10 0.00023 38.1 8.5 61 320-393 190-251 (318)
163 PF04413 Glycos_transf_N: 3-De 76.3 14 0.0003 34.4 8.2 81 100-193 94-178 (186)
164 PLN02208 glycosyltransferase f 74.2 1.2E+02 0.0027 32.0 27.9 51 330-394 303-355 (442)
165 PF03033 Glyco_transf_28: Glyc 72.6 5.1 0.00011 34.2 4.0 36 23-62 17-52 (139)
166 KOG3742 Glycogen synthase [Car 72.4 12 0.00027 39.9 7.3 216 157-403 243-538 (692)
167 COG0569 TrkA K+ transport syst 70.6 37 0.00081 32.5 9.9 117 24-185 15-132 (225)
168 COG2984 ABC-type uncharacteriz 68.1 14 0.0003 37.8 6.4 88 314-403 156-255 (322)
169 PRK08328 hypothetical protein; 67.2 17 0.00037 34.9 6.8 73 329-405 85-160 (231)
170 PF00201 UDPGT: UDP-glucoronos 65.4 35 0.00076 35.9 9.3 64 314-395 305-368 (500)
171 TIGR01658 EYA-cons_domain eyes 64.8 14 0.00031 36.5 5.6 45 313-364 227-271 (274)
172 PF04230 PS_pyruv_trans: Polys 63.1 1.2E+02 0.0027 27.7 19.5 48 342-397 238-285 (286)
173 PLN03004 UDP-glycosyltransfera 61.0 60 0.0013 34.6 10.0 42 342-394 335-378 (451)
174 PF10093 DUF2331: Uncharacteri 60.4 25 0.00055 36.6 6.9 70 317-396 211-290 (374)
175 PF04392 ABC_sub_bind: ABC tra 59.8 54 0.0012 32.2 8.9 66 328-396 149-219 (294)
176 PF01113 DapB_N: Dihydrodipico 59.6 13 0.00029 32.0 4.0 76 317-398 1-101 (124)
177 PF12038 DUF3524: Domain of un 59.0 1.3E+02 0.0028 28.0 10.5 78 100-182 58-135 (168)
178 KOG3339 Predicted glycosyltran 58.3 85 0.0018 29.9 9.2 37 6-43 40-76 (211)
179 COG1703 ArgK Putative periplas 57.4 84 0.0018 32.1 9.7 114 5-138 49-177 (323)
180 PRK05690 molybdopterin biosynt 56.5 25 0.00053 34.2 5.8 70 331-403 91-162 (245)
181 TIGR00715 precor6x_red precorr 53.5 72 0.0015 31.4 8.5 71 326-397 159-232 (256)
182 COG2247 LytB Putative cell wal 53.3 32 0.0007 35.1 6.1 82 313-399 74-166 (337)
183 PF00389 2-Hacid_dh: D-isomer 53.2 75 0.0016 27.2 7.8 67 328-402 8-74 (133)
184 PLN02863 UDP-glucoronosyl/UDP- 53.1 63 0.0014 34.6 8.6 41 342-393 344-386 (477)
185 cd01485 E1-1_like Ubiquitin ac 52.8 59 0.0013 30.4 7.5 76 329-407 78-157 (198)
186 cd04300 GT1_Glycogen_Phosphory 52.6 64 0.0014 36.9 8.9 117 252-394 525-660 (797)
187 PF00899 ThiF: ThiF family; I 51.5 39 0.00084 29.2 5.7 74 327-403 57-132 (135)
188 TIGR02356 adenyl_thiF thiazole 51.1 39 0.00084 31.7 6.0 75 329-406 78-154 (202)
189 cd00757 ThiF_MoeB_HesA_family 50.0 41 0.00088 32.1 6.0 74 328-404 77-152 (228)
190 PRK05447 1-deoxy-D-xylulose 5- 49.1 76 0.0016 33.3 8.2 71 325-400 36-127 (385)
191 cd01080 NAD_bind_m-THF_DH_Cycl 49.0 48 0.001 30.5 6.1 52 314-368 42-94 (168)
192 PF00343 Phosphorylase: Carboh 48.5 4.5E+02 0.0098 30.0 14.5 120 252-397 439-577 (713)
193 PLN02167 UDP-glycosyltransfera 48.2 60 0.0013 34.6 7.5 42 342-394 341-384 (475)
194 COG1887 TagB Putative glycosyl 46.5 3.1E+02 0.0068 28.6 12.4 39 351-397 276-314 (388)
195 TIGR02093 P_ylase glycogen/sta 46.3 65 0.0014 36.9 7.7 128 252-405 522-678 (794)
196 PLN02562 UDP-glycosyltransfera 46.2 1.2E+02 0.0026 32.2 9.4 61 1-62 3-65 (448)
197 PLN02410 UDP-glucoronosyl/UDP- 45.5 1.4E+02 0.0029 31.8 9.7 55 6-62 7-63 (451)
198 PRK04020 rps2P 30S ribosomal p 45.0 1.1E+02 0.0023 29.4 7.9 72 318-394 69-143 (204)
199 PLN02554 UDP-glycosyltransfera 44.9 97 0.0021 33.1 8.5 43 342-393 343-385 (481)
200 PLN02555 limonoid glucosyltran 44.9 1.4E+02 0.0029 32.2 9.6 44 342-394 338-381 (480)
201 PLN02562 UDP-glycosyltransfera 44.8 4E+02 0.0087 28.2 13.1 43 342-395 329-373 (448)
202 TIGR03837 efp_adjacent_2 conse 44.5 1.3E+02 0.0028 31.5 8.9 67 317-393 209-285 (371)
203 PRK14986 glycogen phosphorylas 44.2 1.5E+02 0.0032 34.2 10.1 119 252-396 538-675 (815)
204 CHL00200 trpA tryptophan synth 43.8 3E+02 0.0065 27.2 11.2 67 327-393 132-207 (263)
205 PLN02207 UDP-glycosyltransfera 43.2 1.2E+02 0.0026 32.5 8.9 44 342-394 333-376 (468)
206 PF15024 Glyco_transf_18: Glyc 43.1 33 0.00072 37.6 4.6 49 343-396 324-372 (559)
207 cd00027 BRCT Breast Cancer Sup 41.6 1E+02 0.0022 21.9 5.9 61 317-394 2-64 (72)
208 KOG1192 UDP-glucuronosyl and U 41.6 1.1E+02 0.0024 32.0 8.2 71 315-393 309-379 (496)
209 TIGR00288 conserved hypothetic 41.5 92 0.002 28.7 6.7 68 271-369 89-156 (160)
210 PLN02534 UDP-glycosyltransfera 41.4 4.9E+02 0.011 28.1 31.2 61 1-62 5-71 (491)
211 PF01975 SurE: Survival protei 40.8 38 0.00083 32.0 4.2 37 7-44 1-38 (196)
212 PTZ00408 NAD-dependent deacety 40.7 78 0.0017 30.9 6.4 57 340-398 149-209 (242)
213 PLN02764 glycosyltransferase f 40.1 1.9E+02 0.004 31.0 9.7 44 342-394 318-361 (453)
214 COG0373 HemA Glutamyl-tRNA red 40.1 1.6E+02 0.0035 31.2 9.1 74 316-390 178-267 (414)
215 PRK05597 molybdopterin biosynt 39.8 64 0.0014 33.1 6.0 71 330-405 86-160 (355)
216 PLN02210 UDP-glucosyl transfer 38.4 2.4E+02 0.0052 30.0 10.2 41 3-44 7-49 (456)
217 TIGR00715 precor6x_red precorr 38.3 99 0.0021 30.4 6.8 34 7-44 1-34 (256)
218 TIGR02355 moeB molybdopterin s 37.8 86 0.0019 30.4 6.2 74 327-403 79-154 (240)
219 cd01410 SIRT7 SIRT7: Eukaryoti 37.0 80 0.0017 29.8 5.8 57 340-398 130-192 (206)
220 KOG4626 O-linked N-acetylgluco 36.7 1.7E+02 0.0038 32.9 8.7 59 329-393 802-863 (966)
221 PRK07688 thiamine/molybdopteri 36.5 73 0.0016 32.6 5.8 80 323-405 76-158 (339)
222 COG0496 SurE Predicted acid ph 36.0 1.6E+02 0.0034 29.2 7.7 35 7-43 1-36 (252)
223 PRK00994 F420-dependent methyl 35.5 1.7E+02 0.0037 29.0 7.7 88 6-133 4-93 (277)
224 cd01492 Aos1_SUMO Ubiquitin ac 35.3 99 0.0021 28.9 6.1 76 327-406 76-153 (197)
225 PLN02173 UDP-glucosyl transfer 34.7 2E+02 0.0043 30.6 8.9 44 342-395 318-362 (449)
226 COG3414 SgaB Phosphotransferas 34.6 66 0.0014 26.9 4.2 46 319-368 5-56 (93)
227 PLN00414 glycosyltransferase f 34.5 3E+02 0.0065 29.2 10.2 103 251-393 246-355 (446)
228 PRK08223 hypothetical protein; 33.7 87 0.0019 31.5 5.7 78 326-406 81-162 (287)
229 cd01409 SIRT4 SIRT4: Eukaryoti 33.2 1E+02 0.0022 30.3 6.0 55 342-398 182-241 (260)
230 COG5017 Uncharacterized conser 33.0 2.5E+02 0.0053 25.7 7.7 58 318-393 32-90 (161)
231 PRK10886 DnaA initiator-associ 32.8 1.7E+02 0.0038 27.5 7.3 52 315-368 110-163 (196)
232 PRK14805 ornithine carbamoyltr 32.4 5.3E+02 0.012 25.9 11.2 40 162-204 89-130 (302)
233 PLN02342 ornithine carbamoyltr 31.9 5.9E+02 0.013 26.3 14.0 40 162-204 136-177 (348)
234 PRK10494 hypothetical protein; 31.7 2.1E+02 0.0046 28.1 7.9 92 274-397 107-210 (259)
235 PRK04284 ornithine carbamoyltr 31.5 5.8E+02 0.013 26.1 12.3 41 161-204 95-137 (332)
236 TIGR00262 trpA tryptophan synt 31.2 5.1E+02 0.011 25.3 12.1 74 320-393 119-203 (256)
237 PLN02670 transferase, transfer 31.0 3.4E+02 0.0074 29.1 9.9 41 343-394 341-383 (472)
238 cd05565 PTS_IIB_lactose PTS_II 30.9 1.3E+02 0.0029 25.3 5.5 45 319-367 4-53 (99)
239 PRK13932 stationary phase surv 30.5 1.7E+02 0.0037 28.9 7.1 56 5-62 4-62 (257)
240 TIGR01012 Sa_S2_E_A ribosomal 30.3 2.2E+02 0.0049 27.0 7.5 71 318-393 63-136 (196)
241 PF10649 DUF2478: Protein of u 30.3 61 0.0013 29.8 3.6 41 356-396 87-131 (159)
242 TIGR02069 cyanophycinase cyano 29.6 2.3E+02 0.0051 27.6 7.8 80 315-394 29-122 (250)
243 PLN02152 indole-3-acetate beta 29.5 3.2E+02 0.007 29.1 9.4 59 4-62 3-64 (455)
244 PF02302 PTS_IIB: PTS system, 29.2 1.2E+02 0.0027 23.8 5.0 47 319-368 3-54 (90)
245 PRK14852 hypothetical protein; 29.2 1.1E+02 0.0023 36.0 6.1 77 329-406 389-467 (989)
246 PRK10834 vancomycin high tempe 29.0 3.4E+02 0.0073 26.6 8.7 84 314-400 80-173 (239)
247 PTZ00409 Sir2 (Silent Informat 28.6 1.5E+02 0.0033 29.4 6.3 57 340-398 174-236 (271)
248 cd03146 GAT1_Peptidase_E Type 28.3 3.9E+02 0.0084 25.1 8.9 75 317-393 32-119 (212)
249 PLN00164 glucosyltransferase; 28.1 3.3E+02 0.0073 29.1 9.3 42 342-393 340-382 (480)
250 PF03016 Exostosin: Exostosin 27.6 2E+02 0.0043 27.7 7.0 42 351-395 226-268 (302)
251 cd05312 NAD_bind_1_malic_enz N 27.5 3.3E+02 0.0071 27.4 8.5 78 314-393 23-137 (279)
252 cd01483 E1_enzyme_family Super 27.1 1.7E+02 0.0037 25.3 5.8 75 328-405 55-131 (143)
253 PRK07878 molybdopterin biosynt 26.7 1.4E+02 0.003 31.1 5.9 73 329-406 99-175 (392)
254 COG0743 Dxr 1-deoxy-D-xylulose 26.7 4.8E+02 0.01 27.4 9.6 78 325-404 36-129 (385)
255 PF01012 ETF: Electron transfe 26.7 4.5E+02 0.0097 23.2 9.1 101 20-137 19-124 (164)
256 PLN02670 transferase, transfer 26.3 8.3E+02 0.018 26.2 12.0 54 7-62 7-66 (472)
257 PF01531 Glyco_transf_11: Glyc 26.2 2.8E+02 0.0061 27.5 7.9 67 272-369 189-255 (298)
258 PLN03015 UDP-glucosyl transfer 26.2 4.5E+02 0.0099 28.2 9.9 43 343-394 337-379 (470)
259 PF00731 AIRC: AIR carboxylase 26.0 4.3E+02 0.0094 24.0 8.3 87 319-409 4-99 (150)
260 PF00205 TPP_enzyme_M: Thiamin 25.9 93 0.002 26.7 3.9 51 318-368 14-84 (137)
261 cd01413 SIR2_Af2 SIR2_Af2: Arc 25.7 1.8E+02 0.0038 27.8 6.1 57 340-398 146-208 (222)
262 PRK13398 3-deoxy-7-phosphohept 25.6 3.1E+02 0.0068 27.1 8.0 61 329-396 81-142 (266)
263 PRK14851 hypothetical protein; 25.3 1.4E+02 0.0031 33.5 6.1 75 328-405 99-177 (679)
264 PRK05282 (alpha)-aspartyl dipe 25.2 6.4E+02 0.014 24.5 10.0 78 314-395 31-120 (233)
265 COG4981 Enoyl reductase domain 24.6 1.3E+02 0.0027 33.3 5.2 49 314-365 122-174 (717)
266 PTZ00124 adenosine deaminase; 24.3 6E+02 0.013 26.3 10.0 86 317-404 220-318 (362)
267 cd00762 NAD_bind_malic_enz NAD 24.2 2.9E+02 0.0062 27.4 7.3 38 354-393 97-138 (254)
268 cd05014 SIS_Kpsf KpsF-like pro 23.8 2.1E+02 0.0046 23.8 5.7 75 318-396 2-82 (128)
269 PTZ00410 NAD-dependent SIR2; P 23.8 1.7E+02 0.0038 30.3 5.9 63 340-404 181-247 (349)
270 cd05564 PTS_IIB_chitobiose_lic 23.8 1.7E+02 0.0037 24.1 4.9 68 319-394 3-77 (96)
271 smart00292 BRCT breast cancer 23.6 2.6E+02 0.0055 20.2 5.5 64 315-393 4-69 (80)
272 COG0058 GlgP Glucan phosphoryl 23.2 4.2E+02 0.0092 30.3 9.2 115 252-394 482-608 (750)
273 COG1908 FrhD Coenzyme F420-red 23.2 1.3E+02 0.0028 26.7 4.1 36 329-366 81-118 (132)
274 PLN02210 UDP-glucosyl transfer 22.9 9.2E+02 0.02 25.6 12.0 41 342-393 325-367 (456)
275 COG0111 SerA Phosphoglycerate 22.9 3.2E+02 0.0069 27.8 7.6 72 316-389 142-227 (324)
276 cd02071 MM_CoA_mut_B12_BD meth 22.4 2.4E+02 0.0053 24.0 5.8 42 315-360 80-121 (122)
277 PF05014 Nuc_deoxyrib_tr: Nucl 22.3 97 0.0021 25.9 3.2 44 357-400 57-101 (113)
278 PF03308 ArgK: ArgK protein; 22.1 2.6E+02 0.0057 27.9 6.6 102 17-138 42-155 (266)
279 PF02826 2-Hacid_dh_C: D-isome 22.0 2E+02 0.0043 26.1 5.5 77 315-392 35-124 (178)
280 PRK04531 acetylglutamate kinas 21.9 1.7E+02 0.0037 30.7 5.5 71 255-358 35-106 (398)
281 PRK14138 NAD-dependent deacety 21.7 2.1E+02 0.0046 27.7 5.9 56 340-397 153-214 (244)
282 TIGR00853 pts-lac PTS system, 21.6 2.1E+02 0.0045 23.7 5.0 45 319-367 7-56 (95)
283 COG1671 Uncharacterized protei 21.3 6.4E+02 0.014 23.1 9.2 49 7-62 2-50 (150)
284 cd01408 SIRT1 SIRT1: Eukaryoti 21.1 2.6E+02 0.0057 26.9 6.4 57 340-398 150-211 (235)
285 PF07788 DUF1626: Protein of u 20.8 2.1E+02 0.0045 22.9 4.5 38 150-187 29-69 (70)
286 PRK12475 thiamine/molybdopteri 20.8 2.4E+02 0.0053 28.7 6.3 79 323-404 76-157 (338)
287 PF02441 Flavoprotein: Flavopr 20.5 1.3E+02 0.0029 25.8 3.8 37 5-43 1-37 (129)
288 TIGR00289 conserved hypothetic 20.5 7.5E+02 0.016 23.8 9.3 43 316-360 85-131 (222)
No 1
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-63 Score=488.36 Aligned_cols=377 Identities=51% Similarity=0.813 Sum_probs=330.4
Q ss_pred CCCCCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHH
Q 015058 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (414)
Q Consensus 1 ~~~~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~ 80 (414)
|+.++|++|+|+||.|+||||+|||.+||+. |++|+++++.++.|..++.++|+|+||.++..+. ....++.+.+
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~----~~~~p~~~~l 83 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPF----LQGGPRVLFL 83 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCChHHHhcCCceEEEeCCCCcc----cCCCchhhhh
Confidence 5678899999999999999999999999997 9999999999998999999999999999994332 4445667788
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchh-hhhhccCCCcHHHHHHHHH
Q 015058 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYT-LLSLSLGRRSHFVSIYRWI 159 (414)
Q Consensus 81 l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~-l~~~~~~~~~~~~~i~~~~ 159 (414)
++|.++|+++++|+++. ...+|++++||||++|+++++.+++.++|.++|+||||+.|+ ++.++.|....+.++.+|+
T Consensus 84 ~lKvf~Qfl~Ll~aL~~-~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~ 162 (444)
T KOG2941|consen 84 PLKVFWQFLSLLWALFV-LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWL 162 (444)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHH
Confidence 99999999999999987 589999999999999999999999999999999999999998 5666778888999999999
Q ss_pred HHHHhccCCEEEEeCHHHHHHHHHhhCCc-EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCC
Q 015058 160 EKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (414)
Q Consensus 160 Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~-i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (414)
|++++|+||.-+|||++|+++|.|+||+. +.++|+.|++ +|++.+++|+++++++.+. -.+-+.--++...
T Consensus 163 E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps--~~~~l~~~H~lf~~l~~d~------~~f~ar~~q~~~~ 234 (444)
T KOG2941|consen 163 EKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS--KPTPLDEQHELFMKLAGDH------SPFRAREPQDKAL 234 (444)
T ss_pred HHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC--CCCchhHHHHHHhhhcccc------chhhhcccccchh
Confidence 99999999999999999999999999985 8999999887 8888889999999886421 0122222344455
Q ss_pred ccceeeeccc-cccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcE
Q 015058 239 DETIFTSLAG-IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (414)
Q Consensus 239 ~~~~~~~~~~-~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 317 (414)
+++.|+--+. |++...+++|++++++++|+|++++.+|++|+.++.+.. .+ +.-.+|++
T Consensus 235 ~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~-------------------~~-~~~~lP~l 294 (444)
T KOG2941|consen 235 ERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQL-------------------YD-KTHNLPSL 294 (444)
T ss_pred hhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhh-------------------hh-ccCCCCcE
Confidence 5666765444 778888999999999999999999999999999875421 11 11247999
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee-
Q 015058 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT- 396 (414)
Q Consensus 318 ~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~- 396 (414)
..+|+|+||.+|.|.++|+++++++|.+.++|+..||||.++++||++||+|+|+||++||||+++...||+||+|.+.
T Consensus 295 lciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk 374 (444)
T KOG2941|consen 295 LCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK 374 (444)
T ss_pred EEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999664
Q ss_pred -------CCcccchhhhhhhhh
Q 015058 397 -------CSVVGCLFVLFLTLA 411 (414)
Q Consensus 397 -------~~~~~~~~~~~~~~~ 411 (414)
.|++|++|.-...||
T Consensus 375 cl~ELVkh~eNGlvF~Ds~eLa 396 (444)
T KOG2941|consen 375 CLDELVKHGENGLVFEDSEELA 396 (444)
T ss_pred hHHHHHhcCCCceEeccHHHHH
Confidence 689999998776665
No 2
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.5e-47 Score=385.24 Aligned_cols=343 Identities=74% Similarity=1.174 Sum_probs=265.1
Q ss_pred CCCCCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHH
Q 015058 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (414)
Q Consensus 1 ~~~~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~ 80 (414)
|||+++++|++++|+|.++||+.++.+++++.+++|+|+|+....+..+..+..++++++++. +......++....+.+
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~~~~~~~~~~~~~~ 79 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRLLQRLPRVLYALAL 79 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cccccccccchHHHHH
Confidence 899999999999999999999999999999733589999987765555555677899999973 2211122333333345
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHH
Q 015058 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (414)
Q Consensus 81 l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~E 160 (414)
+....+.+..+.|.++.+..+||+||+|+||....++++.++++..+.|+|+++|+..++........++.+.++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 159 (371)
T PLN02275 80 LLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYE 159 (371)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHH
Confidence 66666677778887655568999999999876666667788888889999999999754333333334556678899999
Q ss_pred HHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCcc
Q 015058 161 KYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (414)
Q Consensus 161 k~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
+++++.||.++|+|+.+++.+.+.+|+++.+|||++.+.|.|.... . .
T Consensus 160 ~~~~~~ad~ii~~S~~~~~~l~~~~g~~i~vi~n~~~~~f~~~~~~--~----~-------------------------- 207 (371)
T PLN02275 160 RHYGKMADGHLCVTKAMQHELDQNWGIRATVLYDQPPEFFRPASLE--I----R-------------------------- 207 (371)
T ss_pred HHHHhhCCEEEECCHHHHHHHHHhcCCCeEEECCCCHHHcCcCCch--h----c--------------------------
Confidence 9999999999999999999998877888889999976777765321 0 0
Q ss_pred ceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEE
Q 015058 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (414)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~li 320 (414)
+.++.+.+++++||+.++||++.|++|+..+..+.+...+-+ .++ ++.+..+|+++|+
T Consensus 208 ------------~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~------~~~----~~~~~~~~~i~l~ 265 (371)
T PLN02275 208 ------------LRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES------DSA----SGKQSLYPRLLFI 265 (371)
T ss_pred ------------ccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc------ccc----ccccccCCCeEEE
Confidence 112234578899999999999999999998864322111100 000 0111236789999
Q ss_pred EEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 321 ITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 321 I~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
|+|+|+++++++++++++|+++|.|.+++++++|++.+|++||++|+++.++.++++|+|++||||||+|||+++++|
T Consensus 266 ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg 343 (371)
T PLN02275 266 ITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 343 (371)
T ss_pred EEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC
Confidence 999999999999999999999999987789999999999999999976555557889999999999999999998754
No 3
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=8.2e-45 Score=372.59 Aligned_cols=347 Identities=53% Similarity=0.850 Sum_probs=262.4
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHH
Q 015058 3 RRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (414)
Q Consensus 3 ~~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~ 82 (414)
.+||++++++++++.+.|+.+++++|+++ ||+|+|+|+....+..+.....+++++.++ ... ....+.++.+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPHDEILSNPNITIHPLP--PPP-QRLNKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCCHHHhcCCCEEEEECC--CCc-cccccchHHHHHHH
Confidence 57999999999999999999999999996 999999998765433333456789999987 332 01223445556666
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHH
Q 015058 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKY 162 (414)
Q Consensus 83 k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~ 162 (414)
+.+.+++.++|.++. ..+||+||+|+||..+++.++++++++.+.|+|++||++.++......+..+.+.++++|+|++
T Consensus 78 ~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (415)
T cd03816 78 KVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKL 156 (415)
T ss_pred HHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHH
Confidence 666666677776543 3789999999987777777788888888999999999975444333344455667788999999
Q ss_pred HhccCCEEEEeCHHHHHHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCc
Q 015058 163 YGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKAD 239 (414)
Q Consensus 163 ~~k~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (414)
+++.||.|+|+|+.+++++.+ ++.+ +.+|||++.+.|.|.+.........++.. +
T Consensus 157 ~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~~~f~p~~~~~~~~~~~~~~~------------------~--- 214 (415)
T cd03816 157 FGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPPEQFRPLPLEEKHELFLKLAK------------------T--- 214 (415)
T ss_pred HhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCHHHceeCcHHHHHHHHHhccc------------------c---
Confidence 999999999999999999987 4543 89999997777888753221111110000 0
Q ss_pred cceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEE
Q 015058 240 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 319 (414)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~l 319 (414)
......+.+..++.++++.+++++||+.++||++.|++|++.+++.. .+ ...+|+++|
T Consensus 215 -~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~-------------------~~--~~~~~~i~l 272 (415)
T cd03816 215 -FLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSA-------------------AT--GPKLPKLLC 272 (415)
T ss_pred -ccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhh-------------------cc--cccCCCEEE
Confidence 00000001112233455568889999999999999999999987521 00 013578999
Q ss_pred EEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 320 IITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 320 iI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+|+|+|++++++++++++++++++.|++++++.++++.+|++||++|+++.++.++++|+|++||||||+|||+++++|
T Consensus 273 ~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~ 351 (415)
T cd03816 273 IITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKC 351 (415)
T ss_pred EEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCC
Confidence 9999999999999999999999888776699999999999999999977665667889999999999999999999753
No 4
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.7e-36 Score=302.66 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEecCCCCCCc-----------ccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHH
Q 015058 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHA-----------AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQ 87 (414)
Q Consensus 19 ~r~~~~a~~La~~~g~eV~vv~~~~~~~~~-----------~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~ 87 (414)
.++...++.|.++ ||+|+|+|..+..+.. .....+++++++++.+.. . . +..+..+......
T Consensus 19 ~~~~~l~~~L~~~-G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~--~-~---~~~~~~~~~~~~~ 91 (412)
T PRK10307 19 KYTGEMAEWLAAR-GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVP--K-Q---PSGLKRLLHLGSF 91 (412)
T ss_pred hhHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCC--C-C---ccHHHHHHHHHHH
Confidence 3566788888886 9999999976432211 112246899999984321 1 1 1112222221111
Q ss_pred HHHHHHHHhhh-cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhh-hhhccCCCcHHHHHHHHHHHHHhc
Q 015058 88 FFMLLWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL-LSLSLGRRSHFVSIYRWIEKYYGK 165 (414)
Q Consensus 88 ~~~l~~~l~~k-~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l-~~~~~~~~~~~~~i~~~~Ek~~~k 165 (414)
.+..+..+..+ ..+||+||+|+|+. .+.+++.+++++.++|+|+++|++.... ...+..+.+.+.++..++|+++++
T Consensus 92 ~~~~~~~~~~~~~~~~Div~~~~p~~-~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (412)
T PRK10307 92 ALSSFFPLLAQRRWRPDRVIGVVPTL-FCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLR 170 (412)
T ss_pred HHHHHHHHhhccCCCCCEEEEeCCcH-HHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHh
Confidence 11111111111 26899999998742 2345566778888999999999864221 111121344556777889999999
Q ss_pred cCCEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccc
Q 015058 166 MANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADET 241 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (414)
.||.++++|+.+++.+.+. +.+ +.+|||| |.+.|.|.+...+.++++++
T Consensus 171 ~ad~ii~~S~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~-------------------------- 223 (412)
T PRK10307 171 RFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSEVARFQPVADADVDALRAQL-------------------------- 223 (412)
T ss_pred hCCEEEecCHHHHHHHHHc-CCCcccEEEECCCcCHhhcCCCCccchHHHHHHc--------------------------
Confidence 9999999999999998764 653 7899999 77778765422233455443
Q ss_pred eeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE
Q 015058 242 IFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 321 (414)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI 321 (414)
++++++ .+++|+|++.++||++.|++|++.+.+ .|+++|+|
T Consensus 224 ----------~~~~~~-~~i~~~G~l~~~kg~~~li~a~~~l~~----------------------------~~~~~l~i 264 (412)
T PRK10307 224 ----------GLPDGK-KIVLYSGNIGEKQGLELVIDAARRLRD----------------------------RPDLIFVI 264 (412)
T ss_pred ----------CCCCCC-EEEEEcCccccccCHHHHHHHHHHhcc----------------------------CCCeEEEE
Confidence 233344 589999999999999999999988753 57899999
Q ss_pred EcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCC-CCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 322 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 322 ~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+|+|+.+++++++++++++++|.|+| ++++++++.+|++||++|+++... .+..+|+|++||||||+|||+++++|
T Consensus 265 vG~g~~~~~l~~~~~~~~l~~v~f~G-~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g 341 (412)
T PRK10307 265 CGQGGGKARLEKMAQCRGLPNVHFLP-LQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG 341 (412)
T ss_pred ECCChhHHHHHHHHHHcCCCceEEeC-CCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC
Confidence 99999999999999999999999997 999999999999999999875432 13348999999999999999999876
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.9e-32 Score=277.87 Aligned_cols=281 Identities=10% Similarity=0.034 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Q 015058 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (414)
Q Consensus 20 r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~ 99 (414)
.+...++.|+++ ||+|+|+|..............+++++++|. ............+. .++.+.+ .+ +.
T Consensus 19 ~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~--~~~~~~~~~~~~~~-~~~~l~~-------~~-~~ 86 (398)
T cd03796 19 HIYQLSQCLIKR-GHKVVVITHAYGNRVGIRYLTNGLKVYYLPF--VVFYNQSTLPTFFG-TFPLLRN-------IL-IR 86 (398)
T ss_pred HHHHHHHHHHHc-CCeeEEEeccCCcCCCcccccCceeEEEecc--eeccCCccccchhh-hHHHHHH-------HH-Hh
Confidence 455667778775 9999999976432222223356899999873 21110111111111 1111111 11 23
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.+||+||+|++... ....+.++++..++|+|++.|+... + .........+++++.++.+|.++|+|+.+.+
T Consensus 87 ~~~DiIh~~~~~~~-~~~~~~~~~~~~~~~~v~t~h~~~~------~--~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 87 ERITIVHGHQAFSA-LAHEALLHARTMGLKTVFTDHSLFG------F--ADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred cCCCEEEECCCCch-HHHHHHHHhhhcCCcEEEEeccccc------c--cchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 79999999987321 2234566677789999999998521 1 1111122345667888999999999999998
Q ss_pred HHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 180 ELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 180 ~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
.+....+.+ +.+|||| |.+.|.|.... .++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~----------------------------------------------~~~ 191 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK----------------------------------------------RDN 191 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc----------------------------------------------CCC
Confidence 765444543 7899999 76666554210 012
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i 335 (414)
++ ++++++||+.++||++.|++|++.+.+ +.|+++|+|+|+|+.++.+++++
T Consensus 192 ~~-~~i~~~grl~~~Kg~~~li~a~~~l~~---------------------------~~~~~~l~i~G~g~~~~~l~~~~ 243 (398)
T cd03796 192 DK-ITIVVISRLVYRKGIDLLVGIIPEICK---------------------------KHPNVRFIIGGDGPKRILLEEMR 243 (398)
T ss_pred Cc-eEEEEEeccchhcCHHHHHHHHHHHHh---------------------------hCCCEEEEEEeCCchHHHHHHHH
Confidence 33 589999999999999999999998875 36789999999999999999999
Q ss_pred HHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 336 RRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 336 ~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++++ +|+|.| +++.++++.+|++||++|.++. .+++|++++||||||+|||+++++|.
T Consensus 244 ~~~~l~~~v~~~G-~~~~~~~~~~l~~ad~~v~pS~---~E~~g~~~~EAma~G~PVI~s~~gg~ 304 (398)
T cd03796 244 EKYNLQDRVELLG-AVPHERVRDVLVQGHIFLNTSL---TEAFCIAIVEAASCGLLVVSTRVGGI 304 (398)
T ss_pred HHhCCCCeEEEeC-CCCHHHHHHHHHhCCEEEeCCh---hhccCHHHHHHHHcCCCEEECCCCCc
Confidence 999998 899997 9999999999999999997643 47899999999999999999998875
No 6
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.5e-32 Score=270.02 Aligned_cols=300 Identities=18% Similarity=0.198 Sum_probs=207.9
Q ss_pred CCCEEEEEEeCCCCCChHHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHH
Q 015058 3 RRGRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (414)
Q Consensus 3 ~~~~~~v~~~~d~~~~~r~~~-~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l 81 (414)
||+.++|+...+.|+..++.. .+..|.++ ||+++|++..+.....+.....++.+++++ ... ......+..+
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~l 73 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPAD-RYRHAVVALTEVSAFRKRIQRPDVAFYALH--KQP----GKDVAVYPQL 73 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhcccc-ccceEEEEcCCCChhHHHHHhcCceEEEeC--CCC----CCChHHHHHH
Confidence 577888888777755544433 34555554 899999986543333333445788998887 221 1111111111
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeE-EEEEcCcchhhhhhccCCCcHHHHHHHHHH
Q 015058 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (414)
Q Consensus 82 ~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~-Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~E 160 (414)
.+. + +..+||+||+|++ .+ ..+.+++++.++|. +.+.|..... .. ..+ ...+.+++
T Consensus 74 ~~~-----------l-~~~~~Divh~~~~---~~-~~~~~~~~~~~~~~~i~~~h~~~~~----~~-~~~--~~~~~~~~ 130 (374)
T TIGR03088 74 YRL-----------L-RQLRPDIVHTRNL---AA-LEAQLPAALAGVPARIHGEHGRDVF----DL-DGS--NWKYRWLR 130 (374)
T ss_pred HHH-----------H-HHhCCCEEEEcch---hH-HHHHHHHHhcCCCeEEEeecCcccc----cc-hhh--HHHHHHHH
Confidence 111 1 2379999999986 22 23344555567775 4456654210 01 111 12345677
Q ss_pred HHHhccCCEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCC
Q 015058 161 KYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQ 236 (414)
Q Consensus 161 k~~~k~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (414)
+++.+.+|.++|+|+.+++.+.+.++.+ +.+|||+ |.+.|.|... .+...+++.
T Consensus 131 ~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-~~~~~~~~~--------------------- 188 (374)
T TIGR03088 131 RLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRG-DRSPILPPD--------------------- 188 (374)
T ss_pred HHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCcc-chhhhhHhh---------------------
Confidence 8888899999999999999998877754 7899999 7777876532 111222110
Q ss_pred CCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCc
Q 015058 237 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 316 (414)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (414)
..+ +.+++++++||+.++||++.|++|+..+.++.. + ..++
T Consensus 189 ---------------~~~-~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~-------------------~----~~~~ 229 (374)
T TIGR03088 189 ---------------FFA-DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP-------------------E----GAER 229 (374)
T ss_pred ---------------cCC-CCCeEEEEEecCCcccCHHHHHHHHHHHHHhCc-------------------c----cccc
Confidence 112 233599999999999999999999998875310 0 1247
Q ss_pred EEEEEEcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 317 LLFIITGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
++|+++|+|+.++++++.+++++++ +|.|.| +.+|++.+|++||++|+|+ ..+++|++++|||+||+|||+|+
T Consensus 230 ~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g---~~~~~~~~~~~adi~v~pS---~~Eg~~~~~lEAma~G~Pvv~s~ 303 (374)
T TIGR03088 230 LRLVIVGDGPARGACEQMVRAAGLAHLVWLPG---ERDDVPALMQALDLFVLPS---LAEGISNTILEAMASGLPVIATA 303 (374)
T ss_pred eEEEEecCCchHHHHHHHHHHcCCcceEEEcC---CcCCHHHHHHhcCEEEecc---ccccCchHHHHHHHcCCCEEEcC
Confidence 9999999999999999999999998 899988 7899999999999999763 35789999999999999999999
Q ss_pred eCCc
Q 015058 396 TCSV 399 (414)
Q Consensus 396 ~~~~ 399 (414)
++|.
T Consensus 304 ~~g~ 307 (374)
T TIGR03088 304 VGGN 307 (374)
T ss_pred CCCc
Confidence 8754
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=9.3e-32 Score=271.50 Aligned_cols=298 Identities=16% Similarity=0.111 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEecCCCCCC-cccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHH-HHHHHHh
Q 015058 19 PRMQYQALSLARQMSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF-MLLWFLC 96 (414)
Q Consensus 19 ~r~~~~a~~La~~~g~eV~vv~~~~~~~~-~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~-~l~~~l~ 96 (414)
..+.+.+..|+++ ||+|+|+|...+... ......+++++++++..+. .... ...+ ...+..+. .+++.++
T Consensus 24 ~~v~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~--~~~~---~~~~~~~~~~~~~~~~ 95 (405)
T TIGR03449 24 VYILETATELARR-GIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPY--EGLD--KEDL---PTQLCAFTGGVLRAEA 95 (405)
T ss_pred ehHHHHHHHHhhC-CCEEEEEecccCCCCCCccccCCCcEEEEecCCCc--ccCC--HHHH---HHHHHHHHHHHHHHHh
Confidence 4556677888885 999999997643221 1222257899999873221 1111 1111 11111111 1121222
Q ss_pred hh-cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccC-CCcHHHHHHHHHHHHHhccCCEEEEeC
Q 015058 97 VK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG-RRSHFVSIYRWIEKYYGKMANGCLCVT 174 (414)
Q Consensus 97 ~k-~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~-~~~~~~~i~~~~Ek~~~k~ad~ii~vS 174 (414)
.+ ..+||+||+|.. ...+++.++++..++|+|+++|+... +....+. ...+.....+++|+.+.+.+|.++++|
T Consensus 96 ~~~~~~~Diih~h~~---~~~~~~~~~~~~~~~p~v~t~h~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s 171 (405)
T TIGR03449 96 RHEPGYYDLIHSHYW---LSGQVGWLLRDRWGVPLVHTAHTLAA-VKNAALADGDTPEPEARRIGEQQLVDNADRLIANT 171 (405)
T ss_pred hccCCCCCeEEechH---HHHHHHHHHHHhcCCCEEEeccchHH-HHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECC
Confidence 22 258999999985 34556667777789999999998632 1110010 111222345567888889999999999
Q ss_pred HHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccc
Q 015058 175 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID 250 (414)
Q Consensus 175 ~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (414)
+.+++.+.+.++.+ +.+|||| |.+.|.|.+ +...+.++
T Consensus 172 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~---~~~~~~~~----------------------------------- 213 (405)
T TIGR03449 172 DEEARDLVRHYDADPDRIDVVAPGADLERFRPGD---RATERARL----------------------------------- 213 (405)
T ss_pred HHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCc---HHHHHHhc-----------------------------------
Confidence 99888888777754 7899999 777776653 22334332
Q ss_pred cccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCc--EEEEEEcC----
Q 015058 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR--LLFIITGK---- 324 (414)
Q Consensus 251 ~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--i~liI~G~---- 324 (414)
++++++ .+|+++||+.++||++.|++|++.+.++ .|+ ++|+|+|+
T Consensus 214 -~~~~~~-~~i~~~G~l~~~K~~~~li~a~~~l~~~---------------------------~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 214 -GLPLDT-KVVAFVGRIQPLKAPDVLLRAVAELLDR---------------------------DPDRNLRVIVVGGPSGS 264 (405)
T ss_pred -CCCCCC-cEEEEecCCCcccCHHHHHHHHHHHHhh---------------------------CCCcceEEEEEeCCCCC
Confidence 234444 4899999999999999999999988752 444 99999995
Q ss_pred C-CChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 325 G-PDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 325 G-~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
| +..++++++++++++. +|+|+| ++++++++.+|+.||++|+|+. .+++|.+++|||+||+|||+++++|.
T Consensus 265 g~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~~~~~~l~~ad~~v~ps~---~E~~g~~~lEAma~G~Pvi~~~~~~~ 337 (405)
T TIGR03449 265 GLATPDALIELAAELGIADRVRFLP-PRPPEELVHVYRAADVVAVPSY---NESFGLVAMEAQACGTPVVAARVGGL 337 (405)
T ss_pred cchHHHHHHHHHHHcCCCceEEECC-CCCHHHHHHHHHhCCEEEECCC---CCCcChHHHHHHHcCCCEEEecCCCc
Confidence 5 5678899999999998 899997 9999999999999999998743 46789999999999999999998664
No 8
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2e-31 Score=277.01 Aligned_cols=286 Identities=18% Similarity=0.169 Sum_probs=196.0
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Q 015058 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (414)
Q Consensus 18 ~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~ 97 (414)
..++...++.|.++ ||+|+|+|.....+ . +..+++++.+..+..+. ....+..+....+ +++++
T Consensus 77 ~~~~~~l~~~L~~~-G~eV~vlt~~~~~~--~--~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~--------l~~~i- 140 (465)
T PLN02871 77 KNRFQNFIRYLREM-GDEVLVVTTDEGVP--Q--EFHGAKVIGSWSFPCPF--YQKVPLSLALSPR--------IISEV- 140 (465)
T ss_pred HHHHHHHHHHHHHC-CCeEEEEecCCCCC--c--cccCceeeccCCcCCcc--CCCceeeccCCHH--------HHHHH-
Confidence 34666777888885 99999999765431 1 23466665544211111 1111100000001 11112
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
+..+||+||+|++. ...+.+.++++..++|+|+++|+....... .. ..+.+.+...++++++++.+|.++++|+.+
T Consensus 141 ~~~kpDiIh~~~~~--~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~-~~-~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~ 216 (465)
T PLN02871 141 ARFKPDLIHASSPG--IMVFGALFYAKLLCVPLVMSYHTHVPVYIP-RY-TFSWLVKPMWDIIRFLHRAADLTLVTSPAL 216 (465)
T ss_pred HhCCCCEEEECCCc--hhHHHHHHHHHHhCCCEEEEEecCchhhhh-cc-cchhhHHHHHHHHHHHHhhCCEEEECCHHH
Confidence 23799999999862 223445556677899999999975321110 01 112222333456788999999999999999
Q ss_pred HHHHHHhhC---CcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc
Q 015058 178 QHELAQNWG---IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (414)
Q Consensus 178 ~~~l~~~~g---i~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (414)
++.+.+... .++.++||| |.+.|.|... ..+.++++. +.
T Consensus 217 ~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~--~~~~~~~~~-----------------------------------~~ 259 (465)
T PLN02871 217 GKELEAAGVTAANRIRVWNKGVDSESFHPRFR--SEEMRARLS-----------------------------------GG 259 (465)
T ss_pred HHHHHHcCCCCcCeEEEeCCccCccccCCccc--cHHHHHHhc-----------------------------------CC
Confidence 999987632 238899999 8888887642 233443321 11
Q ss_pred CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 254 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 254 ~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
.+++ .+|+|+||+.++||++.|++|++.+ |+++|+|+|+|++++++++
T Consensus 260 ~~~~-~~i~~vGrl~~~K~~~~li~a~~~~-------------------------------~~~~l~ivG~G~~~~~l~~ 307 (465)
T PLN02871 260 EPEK-PLIVYVGRLGAEKNLDFLKRVMERL-------------------------------PGARLAFVGDGPYREELEK 307 (465)
T ss_pred CCCC-eEEEEeCCCchhhhHHHHHHHHHhC-------------------------------CCcEEEEEeCChHHHHHHH
Confidence 2344 4899999999999999999987643 5799999999999999988
Q ss_pred HHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 334 ~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++. +|.|+| +++++|++.+|++||++|+++. .+++|++++||||||+|||+++++|.
T Consensus 308 ~~~~~---~V~f~G-~v~~~ev~~~~~~aDv~V~pS~---~E~~g~~vlEAmA~G~PVI~s~~gg~ 366 (465)
T PLN02871 308 MFAGT---PTVFTG-MLQGDELSQAYASGDVFVMPSE---SETLGFVVLEAMASGVPVVAARAGGI 366 (465)
T ss_pred HhccC---CeEEec-cCCHHHHHHHHHHCCEEEECCc---ccccCcHHHHHHHcCCCEEEcCCCCc
Confidence 87643 799997 9999999999999999998743 46789999999999999999987653
No 9
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.2e-30 Score=260.79 Aligned_cols=313 Identities=17% Similarity=0.219 Sum_probs=204.7
Q ss_pred CEEEEEEeCCCCCChH-HHHHHHHHHhhCCCcEEEEecCCCCCCc-ccccCCCeEEEEeecCCCCCCCCCCchHHHHHHH
Q 015058 5 GRACVVVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHA-AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (414)
Q Consensus 5 ~~~~v~~~~d~~~~~r-~~~~a~~La~~~g~eV~vv~~~~~~~~~-~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~ 82 (414)
+++++.-..+.|+..+ +...|.+|+++ ||+|+|+|........ ......++.++..+.|.. .. ....+..+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~ 75 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLP--RS---IFGRFHILC 75 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhC-CCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEc--ch---hhHhHHHHH
Confidence 3444443334454444 46778888886 9999999975432111 111233466666552211 10 111111111
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcH----HHHHHHH
Q 015058 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH----FVSIYRW 158 (414)
Q Consensus 83 k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~----~~~i~~~ 158 (414)
..+......++....+..++|+||+++.+ ... .+++...+.|+|+++|... .... .+.+. +....++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~---~~~--~~~~~~~~~~~i~~~h~~~-~~~~---~~~~~~~~~~~~~~~~ 146 (392)
T cd03805 76 AYLRMLYLALYLLLLPDEKYDVFIVDQVS---ACV--PLLKLFSPSKILFYCHFPD-QLLA---QRGSLLKRLYRKPFDW 146 (392)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEcCcc---hHH--HHHHHhcCCcEEEEEecCh-HHhc---CCCcHHHHHHHHHHHH
Confidence 22222111111112344799999998752 221 1223333478998888432 2111 12222 2344678
Q ss_pred HHHHHhccCCEEEEeCHHHHHHHHHhhCC-c---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCC
Q 015058 159 IEKYYGKMANGCLCVTQAMQHELAQNWGI-K---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGM 233 (414)
Q Consensus 159 ~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi-~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (414)
+|++.++.||.++|+|+.+++.+.+.++. + +.+|||+ |.+.|.|..... .++.
T Consensus 147 ~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~---~~~~------------------- 204 (392)
T cd03805 147 LEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP---DPGL------------------- 204 (392)
T ss_pred HHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc---cccc-------------------
Confidence 89999999999999999999999876643 2 3589999 777776653211 1101
Q ss_pred CCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCC
Q 015058 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (414)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
....++. .+++++||+.+.||++.+++|++.+.++. ..
T Consensus 205 -----------------~~~~~~~-~~i~~~grl~~~Kg~~~ll~a~~~l~~~~------------------------~~ 242 (392)
T cd03805 205 -----------------LIPKSGK-KTFLSINRFERKKNIALAIEAFAILKDKL------------------------AE 242 (392)
T ss_pred -----------------cccCCCc-eEEEEEeeecccCChHHHHHHHHHHHhhc------------------------cc
Confidence 0122344 58999999999999999999999987630 00
Q ss_pred CCcEEEEEEcCCCCh--------HHHHHHHHH-cCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH
Q 015058 314 YPRLLFIITGKGPDK--------ESYEEKIRR-LRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY 383 (414)
Q Consensus 314 ~p~i~liI~G~G~~~--------e~l~~~i~~-l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E 383 (414)
.|+++|+|+|+|+.+ +++++++++ ++++ +|.|+| +++.+++..+|+.||++++++ ..+++|++++|
T Consensus 243 ~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g-~~~~~~~~~~l~~ad~~l~~s---~~E~~g~~~lE 318 (392)
T cd03805 243 FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLP-SISDSQKELLLSSARALLYTP---SNEHFGIVPLE 318 (392)
T ss_pred ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeC-CCChHHHHHHHhhCeEEEECC---CcCCCCchHHH
Confidence 278999999999864 788999999 9998 999997 999999999999999999753 34778999999
Q ss_pred HHHcCCeEEEeeeCCcc
Q 015058 384 CWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 384 ama~G~Pvi~s~~~~~~ 400 (414)
|||||+|||+++++|..
T Consensus 319 Ama~G~PvI~s~~~~~~ 335 (392)
T cd03805 319 AMYAGKPVIACNSGGPL 335 (392)
T ss_pred HHHcCCCEEEECCCCcH
Confidence 99999999999988753
No 10
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.98 E-value=1.9e-29 Score=243.26 Aligned_cols=306 Identities=22% Similarity=0.286 Sum_probs=214.7
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEecCCCCCCccc------ccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHH
Q 015058 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAI------LEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (414)
Q Consensus 16 ~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~------~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~ 89 (414)
|...++...+..|+++ ||+|++++.......... ....++++++++.... . ... .+..+...+....
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~~~ 87 (394)
T cd03794 15 GGAFRTTELAEELVKR-GHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPY--K-KNG---LLKRLLNYLSFAL 87 (394)
T ss_pred CcceeHHHHHHHHHhC-CceEEEEecCCCcccccccccceEEecCCeEEEEEecCCC--C-ccc---hHHHHHhhhHHHH
Confidence 4556777888999996 999999997754432222 2357889988873221 1 111 1111122221111
Q ss_pred HHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhh-hhccCC-CcHHHHHHHHHHHHHhccC
Q 015058 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLL-SLSLGR-RSHFVSIYRWIEKYYGKMA 167 (414)
Q Consensus 90 ~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~-~~~~~~-~~~~~~i~~~~Ek~~~k~a 167 (414)
...+.+..+..+||+||+++++ ......+.++++..++|++++.|+...... ...... .....++.+++|++..+.+
T Consensus 88 ~~~~~~~~~~~~~D~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (394)
T cd03794 88 SALLALLKRRRRPDVIIATSPP-LLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRA 166 (394)
T ss_pred HHHHHHHhcccCCCEEEEcCCh-HHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcC
Confidence 2222222235899999999842 233445556666678999999998632211 111111 2222367788899999999
Q ss_pred CEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCcccee
Q 015058 168 NGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIF 243 (414)
Q Consensus 168 d~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (414)
|.++++|+.+++.+. .++.+ +.++||+ +...+.+.... .. +.++
T Consensus 167 d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~-~~~~---------------------------- 214 (394)
T cd03794 167 DAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPPAD--ES-LRKE---------------------------- 214 (394)
T ss_pred CEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCccch--hh-hhhc----------------------------
Confidence 999999999999987 33443 8899999 55555444321 11 1111
Q ss_pred eeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEc
Q 015058 244 TSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG 323 (414)
Q Consensus 244 ~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G 323 (414)
... +.+..++++|++.++||++.+++|++.+.+ . ++++|+|+|
T Consensus 215 --------~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~---------------------------~-~~~~l~i~G 257 (394)
T cd03794 215 --------LGL-DDKFVVLYAGNIGRAQGLDTLLEAAALLKD---------------------------R-PDIRFLIVG 257 (394)
T ss_pred --------cCC-CCcEEEEEecCcccccCHHHHHHHHHHHhh---------------------------c-CCeEEEEeC
Confidence 112 234589999999999999999999998874 2 689999999
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCC--CCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 324 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 324 ~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~--g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+|+..+.+++.+...++.+|.|+| +++.+++..+|++||++++++.... +.++|+|++|||+||+|||+++.++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~ 334 (394)
T cd03794 258 DGPEKEELKELAKALGLDNVTFLG-RVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES 334 (394)
T ss_pred CcccHHHHHHHHHHcCCCcEEEeC-CCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc
Confidence 999999999988888888999998 9999999999999999998754432 56789999999999999999988874
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.98 E-value=1.2e-29 Score=261.95 Aligned_cols=305 Identities=18% Similarity=0.061 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhhCCC--cEEEEecCCCC-------CCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 015058 20 RMQYQALSLARQMSL--EVDVVAYGGSK-------PHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM 90 (414)
Q Consensus 20 r~~~~a~~La~~~g~--eV~vv~~~~~~-------~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~ 90 (414)
.+...+..|+++ || +|+|+|..... ........+|+++++++. ....... ......++......
T Consensus 31 ~v~~La~~L~~~-G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~--~~~~~~~-~~~~~~~~~~~~~~--- 103 (439)
T TIGR02472 31 YVLELARALARR-SEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPF--GPRRYLR-KELLWPYLDELADN--- 103 (439)
T ss_pred HHHHHHHHHHhC-CCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecC--CCCCCcC-hhhhhhhHHHHHHH---
Confidence 444556667774 87 99999964211 011112257999999983 2211111 00111111111111
Q ss_pred HHHHHhhhc-CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhh-hcc-C-CCcHHHH---HHH--HHHH
Q 015058 91 LLWFLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS-LSL-G-RRSHFVS---IYR--WIEK 161 (414)
Q Consensus 91 l~~~l~~k~-~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~-~~~-~-~~~~~~~---i~~--~~Ek 161 (414)
+. .++.+. .+|||||+|++ .+.+++.++++..++|+|+|.|+....... ... + ....+.+ +.. ..|+
T Consensus 104 l~-~~~~~~~~~~DvIH~h~~---~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 104 LL-QHLRQQGHLPDLIHAHYA---DAGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HH-HHHHHcCCCCCEEEEcch---hHHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 11 122222 47999999986 456677777888899999999986432110 000 0 0011111 111 2478
Q ss_pred HHhccCCEEEEeCHHHHHH-HHHhhCC---cEEEecCC-CCCCcCCCChH-HHHHHHHHhhhhccCCCCccccccCCCCC
Q 015058 162 YYGKMANGCLCVTQAMQHE-LAQNWGI---KATVLYDQ-PPEFFHPTSLE-EKHELFCRLNKILHQPLGVQDCVSNGMEG 235 (414)
Q Consensus 162 ~~~k~ad~ii~vS~~~~~~-l~~~~gi---~i~vI~n~-~~~~f~p~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 235 (414)
+.++.+|.|+|+|...... +....++ ++.+|||| |++.|.|.... +..++++.+..
T Consensus 180 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~------------------ 241 (439)
T TIGR02472 180 ETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAP------------------ 241 (439)
T ss_pred HHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHh------------------
Confidence 8889999999999765443 3332233 38899999 88888775321 11222222110
Q ss_pred CCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCC
Q 015058 236 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 315 (414)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (414)
.+..++++ +|+++||+.++||++.||+|++.+.+.- ..+
T Consensus 242 ---------------~~~~~~~~-~i~~vGrl~~~Kg~~~li~A~~~l~~~~-------------------------~~~ 280 (439)
T TIGR02472 242 ---------------FLKDPEKP-PILAISRPDRRKNIPSLVEAYGRSPKLQ-------------------------EMA 280 (439)
T ss_pred ---------------hccccCCc-EEEEEcCCcccCCHHHHHHHHHhChhhh-------------------------hhc
Confidence 11234454 8999999999999999999998753210 123
Q ss_pred cEEEEEEcCCCChHH-----------HHHHHHHcCCC-cEEEecCCCChhhHHHHHhhc----cEEEeeccCCCCCCCch
Q 015058 316 RLLFIITGKGPDKES-----------YEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPM 379 (414)
Q Consensus 316 ~i~liI~G~G~~~e~-----------l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~a----Dl~V~~~~s~~g~~lP~ 379 (414)
++. +|+|+|++++. ++++++++++. +|+|.| +++++|++.+|++| |+||+|+ ..|++|+
T Consensus 281 ~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g-~~~~~~~~~~~~~a~~~~Dv~v~pS---~~E~fg~ 355 (439)
T TIGR02472 281 NLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPK-HHRPDDVPELYRLAARSRGIFVNPA---LTEPFGL 355 (439)
T ss_pred cEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecC-CCCHHHHHHHHHHHhhcCCEEeccc---ccCCccc
Confidence 443 46899886432 44567888998 999997 88999999999987 8999764 3578999
Q ss_pred hHHHHHHcCCeEEEeeeCCc
Q 015058 380 KVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 380 kl~Eama~G~Pvi~s~~~~~ 399 (414)
+++||||||+|||+|+++|.
T Consensus 356 ~~lEAma~G~PvV~s~~gg~ 375 (439)
T TIGR02472 356 TLLEAAACGLPIVATDDGGP 375 (439)
T ss_pred HHHHHHHhCCCEEEeCCCCc
Confidence 99999999999999998764
No 12
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=9.4e-30 Score=249.16 Aligned_cols=279 Identities=12% Similarity=0.052 Sum_probs=194.4
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 015058 22 QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIAS 101 (414)
Q Consensus 22 ~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~ 101 (414)
...+..|.++ ||+|+|+|........ .....++++++++ ..... . +......+. .+|+..++..+
T Consensus 22 ~~la~~L~~~-g~~v~v~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~---~----~~~~~~~~~----~~~~~~~~~~~ 86 (363)
T cd04955 22 EELAPRLVAR-GHEVTVYCRSPYPKQK-ETEYNGVRLIHIP--APEIG---G----LGTIIYDIL----AILHALFVKRD 86 (363)
T ss_pred HHHHHHHHhc-CCCEEEEEccCCCCCc-ccccCCceEEEcC--CCCcc---c----hhhhHHHHH----HHHHHHhccCC
Confidence 3455667765 9999999987543221 3345789999887 22111 0 111111111 11222222356
Q ss_pred CcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHH
Q 015058 102 PDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (414)
Q Consensus 102 ~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l 181 (414)
+|++|...| ....++.++++ .+.|++++.|+..+.- .....+..++.++.|++..+.||.++|+|+.+++.+
T Consensus 87 ~~~i~~~~~---~~~~~~~~~~~-~~~~~v~~~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 158 (363)
T cd04955 87 IDHVHALGP---AIAPFLPLLRL-KGKKVVVNMDGLEWKR----AKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYL 158 (363)
T ss_pred eEEEEecCc---cHHHHHHHHHh-cCCCEEEEccCcceee----cccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHH
Confidence 666666655 22333444433 4899999999875421 112333456778889999999999999999999999
Q ss_pred HHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeE
Q 015058 182 AQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPAL 260 (414)
Q Consensus 182 ~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (414)
++.+|.+..+|||+ +...+.+. .+.++++ ++++ ++ .
T Consensus 159 ~~~~~~~~~~i~ngv~~~~~~~~-----~~~~~~~------------------------------------~~~~-~~-~ 195 (363)
T cd04955 159 KEKYGRDSTYIPYGADHVVSSEE-----DEILKKY------------------------------------GLEP-GR-Y 195 (363)
T ss_pred HHhcCCCCeeeCCCcChhhcchh-----hhhHHhc------------------------------------CCCC-Cc-E
Confidence 88888878899999 55444330 1222221 2222 23 5
Q ss_pred EEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHH-HcC
Q 015058 261 VVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR-RLR 339 (414)
Q Consensus 261 i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~-~l~ 339 (414)
++++||+.++||++.|++|++.+. ++++|+|+|+|+..+.+++.++ +++
T Consensus 196 i~~~G~~~~~Kg~~~li~a~~~l~------------------------------~~~~l~ivG~~~~~~~~~~~~~~~~~ 245 (363)
T cd04955 196 YLLVGRIVPENNIDDLIEAFSKSN------------------------------SGKKLVIVGNADHNTPYGKLLKEKAA 245 (363)
T ss_pred EEEEecccccCCHHHHHHHHHhhc------------------------------cCceEEEEcCCCCcchHHHHHHHHhC
Confidence 779999999999999999998764 2689999999988777887777 677
Q ss_pred CC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 340 LK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+. +|+|+| +++.+++..+|++||++++++. ..+++|++++|||+||+|||++++++.
T Consensus 246 ~~~~V~~~g-~~~~~~~~~~~~~ad~~v~ps~--~~e~~~~~~~EAma~G~PvI~s~~~~~ 303 (363)
T cd04955 246 ADPRIIFVG-PIYDQELLELLRYAALFYLHGH--SVGGTNPSLLEAMAYGCPVLASDNPFN 303 (363)
T ss_pred CCCcEEEcc-ccChHHHHHHHHhCCEEEeCCc--cCCCCChHHHHHHHcCCCEEEecCCcc
Confidence 77 999997 9999999999999999997633 237899999999999999999988764
No 13
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.98 E-value=1e-29 Score=260.90 Aligned_cols=215 Identities=15% Similarity=0.166 Sum_probs=164.9
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHh--hcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~--~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~ 175 (414)
+..+||+||+|.. +....+.+++. ..+.|+++++|+.... ..... ..++...+..++.||.++++|+
T Consensus 115 ~~~~~diihaH~~---~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~-------~~~~~-~~~~~~~~~~~~~ad~vv~~S~ 183 (406)
T PRK15427 115 TPFVADVFIAHFG---PAGVTAAKLRELGVLRGKIATIFHGIDIS-------SREVL-NHYTPEYQQLFRRGDLMLPISD 183 (406)
T ss_pred ccCCCCEEEEcCC---hHHHHHHHHHHhCCCCCCeEEEEcccccc-------cchhh-hhhhHHHHHHHHhCCEEEECCH
Confidence 3468999999986 33444444444 2345678899986431 11111 1111223445589999999999
Q ss_pred HHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 176 AMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 176 ~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
.+++.+.+. |.+ +.++||| |.+.|.+....
T Consensus 184 ~~~~~l~~~-g~~~~ki~vi~nGvd~~~f~~~~~~--------------------------------------------- 217 (406)
T PRK15427 184 LWAGRLQKM-GCPPEKIAVSRMGVDMTRFSPRPVK--------------------------------------------- 217 (406)
T ss_pred HHHHHHHHc-CCCHHHEEEcCCCCCHHHcCCCccc---------------------------------------------
Confidence 999999764 764 8899999 76666543210
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHH
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l 331 (414)
.++.++.|+++||+.++||++.|++|++.++++ .++++|.|+|+|+.++++
T Consensus 218 --~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~ivG~G~~~~~l 268 (406)
T PRK15427 218 --APATPLEIISVARLTEKKGLHVAIEACRQLKEQ---------------------------GVAFRYRILGIGPWERRL 268 (406)
T ss_pred --cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEECchhHHHH
Confidence 012345799999999999999999999998763 578999999999999999
Q ss_pred HHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCC-C--CCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 332 EEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 332 ~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-~--g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++.++++|++ +|+|.| ++++++++.+|++||++|+|+... . .+|+|++++||||||+|||+|+++|.
T Consensus 269 ~~~~~~~~l~~~V~~~G-~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~ 339 (406)
T PRK15427 269 RTLIEQYQLEDVVEMPG-FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGI 339 (406)
T ss_pred HHHHHHcCCCCeEEEeC-CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCc
Confidence 9999999998 999997 999999999999999999875422 2 37899999999999999999998764
No 14
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=1.4e-29 Score=247.94 Aligned_cols=276 Identities=17% Similarity=0.122 Sum_probs=191.9
Q ss_pred HHHHHHhhCCCcEEEEecCCCCC-CcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 015058 24 QALSLARQMSLEVDVVAYGGSKP-HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (414)
Q Consensus 24 ~a~~La~~~g~eV~vv~~~~~~~-~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~ 102 (414)
.+..|++ .||+|++++...... ........++.+++++ .. .......+.. +. .++ +..+|
T Consensus 21 l~~~L~~-~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~----~~-------~~~-~~~~~ 81 (358)
T cd03812 21 YYRNLDR-SKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIP--AR----KKNPLKYFKK----LY-------KLI-KKNKY 81 (358)
T ss_pred HHHhcCc-cceEEEEEEeCCCCcchHHHHHHcCCeEEEec--CC----CccHHHHHHH----HH-------HHH-hcCCC
Confidence 4455555 499999999775431 2223345677777755 21 1111111111 11 111 34799
Q ss_pred cEEEEeCCCCchHHHHHHHHHhhcCCeE-EEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHH
Q 015058 103 DVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (414)
Q Consensus 103 Dvvh~~~pp~~~~~~~~~la~~~~~~~~-Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l 181 (414)
|+||+|+++ ...+++.+ .+..+.|. +++.|+..+.. ...... ...+++++.+.+.+|.++++|+...+.+
T Consensus 82 Dvv~~~~~~--~~~~~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~i~~s~~~~~~~ 152 (358)
T cd03812 82 DIVHVHGSS--ASGFILLA-AKKAGVKVRIAHSHNTSDSH----DKKKKI--LKYKVLRKLINRLATDYLACSEEAGKWL 152 (358)
T ss_pred CEEEEeCcc--hhHHHHHH-HhhCCCCeEEEEeccccccc----cccchh--hHHHHHHHHHHhcCCEEEEcCHHHHHHH
Confidence 999999873 22333333 34456665 55788764311 001111 1115667888899999999999999988
Q ss_pred HHhh-CCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCe
Q 015058 182 AQNW-GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPA 259 (414)
Q Consensus 182 ~~~~-gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (414)
.+.. ..++.+|||+ |.+.|.+.+.. +.. ++++ +..+++ +
T Consensus 153 ~~~~~~~~~~vi~ngvd~~~~~~~~~~-~~~-~~~~------------------------------------~~~~~~-~ 193 (358)
T cd03812 153 FGKVKNKKFKVIPNGIDLEKFIFNEEI-RKK-RREL------------------------------------GILEDK-F 193 (358)
T ss_pred HhCCCcccEEEEeccCcHHHcCCCchh-hhH-HHHc------------------------------------CCCCCC-E
Confidence 7642 2348999999 76666554321 111 2121 123344 5
Q ss_pred EEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcC
Q 015058 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR 339 (414)
Q Consensus 260 ~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~ 339 (414)
.|+++||+.++||++.+++|+..+.+ .+|+++|+|+|+|+..+.+++.+++++
T Consensus 194 ~i~~vGr~~~~Kg~~~li~a~~~l~~---------------------------~~~~~~l~ivG~g~~~~~~~~~~~~~~ 246 (358)
T cd03812 194 VIGHVGRFSEQKNHEFLIEIFAELLK---------------------------KNPNAKLLLVGDGELEEEIKKKVKELG 246 (358)
T ss_pred EEEEEeccccccChHHHHHHHHHHHH---------------------------hCCCeEEEEEeCCchHHHHHHHHHhcC
Confidence 89999999999999999999999976 368899999999999999999999999
Q ss_pred CC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 340 LK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+. +|.|.| +.++++.+|+.||++|+|+. .+++|++++||||+|+|||+|+.+|.
T Consensus 247 ~~~~v~~~g---~~~~~~~~~~~adi~v~ps~---~E~~~~~~lEAma~G~PvI~s~~~~~ 301 (358)
T cd03812 247 LEDKVIFLG---VRNDVPELLQAMDVFLFPSL---YEGLPLVLIEAQASGLPCILSDTITK 301 (358)
T ss_pred CCCcEEEec---ccCCHHHHHHhcCEEEeccc---ccCCCHHHHHHHHhCCCEEEEcCCch
Confidence 98 999998 48899999999999998743 47899999999999999999998875
No 15
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=2.7e-29 Score=247.99 Aligned_cols=295 Identities=16% Similarity=0.160 Sum_probs=200.7
Q ss_pred EEEEEEeCCCCCChHH-HHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHH
Q 015058 6 RACVVVLGDLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~-~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~ 84 (414)
+++++...++|+.+++ ...++.|+++ ||+|+|+|..... ......+++.++.++....+. ....... ...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~ 72 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSSRPF--RLDEYSPNIFFHEVEVPQYPL--FQYPPYD----LAL 72 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecCCCc--chhhhccCeEEEEecccccch--hhcchhH----HHH
Confidence 3455556566655444 4567788886 9999999976421 112234566666554111111 0000000 111
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhh---cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHH
Q 015058 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL---RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (414)
Q Consensus 85 l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~---~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek 161 (414)
.. .++.+. +..+||+||+|++. +....+.++.+. .++|+|++.|+..... .+... .++++++
T Consensus 73 ~~----~l~~~i-~~~~~divh~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----~~~~~----~~~~~~~ 137 (371)
T cd04962 73 AS----KIAEVA-KRYKLDLLHVHYAV--PHAVAAYLAREILGKKDLPVVTTLHGTDITL----VGQDP----SFQPATR 137 (371)
T ss_pred HH----HHHHHH-hcCCccEEeecccC--CccHHHHHHHHhcCcCCCcEEEEEcCCcccc----ccccc----cchHHHH
Confidence 11 112222 34799999999752 223333333332 3799999999864321 11111 2235567
Q ss_pred HHhccCCEEEEeCHHHHHHHHHhhCC--cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCC
Q 015058 162 YYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKA 238 (414)
Q Consensus 162 ~~~k~ad~ii~vS~~~~~~l~~~~gi--~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (414)
+..+.+|.++++|+.+++.+.+.++. ++.++||+ +...|.+... ...++++
T Consensus 138 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~---~~~~~~~----------------------- 191 (371)
T cd04962 138 FSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPD---EALKRRL----------------------- 191 (371)
T ss_pred HHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCch---HHHHHhc-----------------------
Confidence 78899999999999999998876543 38899999 6555655431 2223222
Q ss_pred ccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEE
Q 015058 239 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 318 (414)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ 318 (414)
++.+++ .+++++||+.+.||++.+++|++.+.+ .++++
T Consensus 192 -------------~~~~~~-~~il~~g~l~~~K~~~~li~a~~~l~~----------------------------~~~~~ 229 (371)
T cd04962 192 -------------GAPEGE-KVLIHISNFRPVKRIDDVIRIFAKVRK----------------------------EVPAR 229 (371)
T ss_pred -------------CCCCCC-eEEEEecccccccCHHHHHHHHHHHHh----------------------------cCCce
Confidence 233444 489999999999999999999998875 23589
Q ss_pred EEEEcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 319 FIITGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 319 liI~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
|+|+|+|++.+++++.++++++. +|+|.| +.++++.+|+.||++|+|+. .+++|++++|||+||+|||+++.+
T Consensus 230 l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g---~~~~~~~~~~~~d~~v~ps~---~E~~~~~~~EAma~g~PvI~s~~~ 303 (371)
T cd04962 230 LLLVGDGPERSPAERLARELGLQDDVLFLG---KQDHVEELLSIADLFLLPSE---KESFGLAALEAMACGVPVVASNAG 303 (371)
T ss_pred EEEEcCCcCHHHHHHHHHHcCCCceEEEec---CcccHHHHHHhcCEEEeCCC---cCCCccHHHHHHHcCCCEEEeCCC
Confidence 99999999999999999999998 899998 56789999999999998743 468999999999999999999886
Q ss_pred C
Q 015058 398 S 398 (414)
Q Consensus 398 ~ 398 (414)
|
T Consensus 304 ~ 304 (371)
T cd04962 304 G 304 (371)
T ss_pred C
Confidence 5
No 16
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=5e-29 Score=243.78 Aligned_cols=274 Identities=17% Similarity=0.160 Sum_probs=192.3
Q ss_pred HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 015058 21 MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIA 100 (414)
Q Consensus 21 ~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~ 100 (414)
....+..|+++ ||+|++++.... .....+..+++++.++ .... .....+. .... ++..+ +..
T Consensus 16 ~~~l~~~L~~~-g~~v~v~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~~----~~~~----l~~~~-~~~ 77 (355)
T cd03819 16 TLELARALVER-GHRSLVASAGGR--LVAELEAEGSRHIKLP--FISK----NPLRILL----NVAR----LRRLI-REE 77 (355)
T ss_pred HHHHHHHHHHc-CCEEEEEcCCCc--hHHHHHhcCCeEEEcc--cccc----chhhhHH----HHHH----HHHHH-HHc
Confidence 33566777775 999999986543 2233345678877776 2211 1111111 1111 11112 237
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHH
Q 015058 101 SPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHE 180 (414)
Q Consensus 101 ~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~ 180 (414)
+||+||+|++ ...+.+.++.+..++|+|+++|+.... .. ..+.+.+.+|.++++|+.+++.
T Consensus 78 ~~dii~~~~~---~~~~~~~~~~~~~~~~~i~~~h~~~~~--------~~--------~~~~~~~~~~~vi~~s~~~~~~ 138 (355)
T cd03819 78 KVDIVHARSR---APAWSAYLAARRTRPPFVTTVHGFYSV--------NF--------RYNAIMARGDRVIAVSNFIADH 138 (355)
T ss_pred CCCEEEECCC---chhHHHHHHHHhcCCCEEEEeCCchhh--------HH--------HHHHHHHhcCEEEEeCHHHHHH
Confidence 9999999986 333455566677799999999987421 10 1234457899999999999999
Q ss_pred HHHhhCCc---EEEecCC-CCCCcCCCCh--HHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 181 LAQNWGIK---ATVLYDQ-PPEFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 181 l~~~~gi~---i~vI~n~-~~~~f~p~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
+.+.++++ +.+|||+ |.+.|.+... .....+++++ +++
T Consensus 139 ~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~ 182 (355)
T cd03819 139 IRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREW------------------------------------PLP 182 (355)
T ss_pred HHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHc------------------------------------CCC
Confidence 98777764 7899999 7676755431 1111133332 233
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHH---
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY--- 331 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l--- 331 (414)
++. .+++++||+++.||++.+++|+..+++ ..++++|+|+|+|+..+.+
T Consensus 183 ~~~-~~i~~~Gr~~~~Kg~~~li~~~~~l~~---------------------------~~~~~~l~ivG~~~~~~~~~~~ 234 (355)
T cd03819 183 KGK-PVILLPGRLTRWKGQEVFIEALARLKK---------------------------DDPDVHLLIVGDAQGRRFYYAE 234 (355)
T ss_pred CCc-eEEEEeeccccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEECCcccchHHHH
Confidence 344 589999999999999999999999875 2568999999999765444
Q ss_pred -HHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCcc
Q 015058 332 -EEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 332 -~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~~ 400 (414)
++.++++++. +|.|+| ..+|+..+|++||++++++ ...+++|++++||||||+|||+++++|..
T Consensus 235 ~~~~~~~~~~~~~v~~~g---~~~~~~~~l~~ad~~i~ps--~~~e~~~~~l~EA~a~G~PvI~~~~~~~~ 300 (355)
T cd03819 235 LLELIKRLGLQDRVTFVG---HCSDMPAAYALADIVVSAS--TEPEAFGRTAVEAQAMGRPVIASDHGGAR 300 (355)
T ss_pred HHHHHHHcCCcceEEEcC---CcccHHHHHHhCCEEEecC--CCCCCCchHHHHHHhcCCCEEEcCCCCcH
Confidence 5667888887 899998 4889999999999999764 23568999999999999999999987653
No 17
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=5.5e-29 Score=245.45 Aligned_cols=218 Identities=20% Similarity=0.177 Sum_probs=169.9
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
+..+||+||+|.. .....+..+++..|+|+|+++|+....... ....... .+.+...++.+.+.+|.++++|+.+
T Consensus 79 ~~~~~dvvh~~~~---~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~d~ii~~s~~~ 153 (367)
T cd05844 79 RRHRPDLVHAHFG---FDGVYALPLARRLGVPLVVTFHGFDATTSL-ALLLRSR-WALYARRRRRLARRAALFIAVSQFI 153 (367)
T ss_pred HhhCCCEEEeccC---chHHHHHHHHHHcCCCEEEEEeCccccccc-hhhcccc-hhHHHHHHHHHHHhcCEEEECCHHH
Confidence 4579999999976 334444455677899999999975422110 0111111 3445667788889999999999999
Q ss_pred HHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc
Q 015058 178 QHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (414)
Q Consensus 178 ~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (414)
++.+.+. |.+ +.+++|+ |.+.|.|...
T Consensus 154 ~~~~~~~-~~~~~~i~vi~~g~d~~~~~~~~~------------------------------------------------ 184 (367)
T cd05844 154 RDRLLAL-GFPPEKVHVHPIGVDTAKFTPATP------------------------------------------------ 184 (367)
T ss_pred HHHHHHc-CCCHHHeEEecCCCCHHhcCCCCC------------------------------------------------
Confidence 9998875 654 8899999 6555544310
Q ss_pred CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 254 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 254 ~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
..+ +..++++|++.+.||++.+++|+..+.++ +++++|+|+|+|+..+++++
T Consensus 185 ~~~-~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~~~~~~ 236 (367)
T cd05844 185 ARR-PPRILFVGRFVEKKGPLLLLEAFARLARR---------------------------VPEVRLVIIGDGPLLAALEA 236 (367)
T ss_pred CCC-CcEEEEEEeeccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCchHHHHHHH
Confidence 012 24899999999999999999999998763 67899999999999999999
Q ss_pred HHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCC-C--CCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 334 KIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 334 ~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-~--g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
.++++|+. +|+|.| +++.++++.+|++||++|+|+... . .+++|++++|||+||+|||+++.+|
T Consensus 237 ~~~~~~~~~~v~~~g-~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~ 304 (367)
T cd05844 237 LARALGLGGRVTFLG-AQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG 304 (367)
T ss_pred HHHHcCCCCeEEECC-CCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC
Confidence 99999987 999997 899999999999999999875322 1 3789999999999999999998865
No 18
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=1.5e-28 Score=244.13 Aligned_cols=297 Identities=19% Similarity=0.136 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCCCcc-cccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 015058 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (414)
Q Consensus 20 r~~~~a~~La~~~g~eV~vv~~~~~~~~~~-~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k 98 (414)
.+...+..|+++ ||+|+|+|......... ....+++.+++++ ..+....++. ............ +...+.+
T Consensus 26 ~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 97 (398)
T cd03800 26 YVLELARALARL-GHEVDIFTRRIDDALPPIVELAPGVRVVRVP--AGPAEYLPKE-ELWPYLDEFADD----LLRFLRR 97 (398)
T ss_pred hHHHHHHHHhcc-CceEEEEEecCCcccCCccccccceEEEecc--cccccCCChh-hcchhHHHHHHH----HHHHHHh
Confidence 456677888885 99999999764432221 2345789998887 2221111110 011111111111 1112222
Q ss_pred c-CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCC-cHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 99 I-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRR-SHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 99 ~-~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~-~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
. .+||+||+|.+ .+..++..+++..++|+|++.|+..... ....... ........+.|+..++.||.++|+|+.
T Consensus 98 ~~~~~Div~~~~~---~~~~~~~~~~~~~~~~~i~~~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 173 (398)
T cd03800 98 EGGRPDLIHAHYW---DSGLVALLLARRLGIPLVHTFHSLGAVK-RRHLGAADTYEPARRIEAEERLLRAADRVIASTPQ 173 (398)
T ss_pred cCCCccEEEEecC---ccchHHHHHHhhcCCceEEEeecccccC-CcccccccccchhhhhhHHHHHHhhCCEEEEcCHH
Confidence 1 29999999976 3445566667778999999999864210 0001001 111233346688889999999999999
Q ss_pred HHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccc
Q 015058 177 MQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (414)
Q Consensus 177 ~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (414)
+++.+.+.++.+ +.+|||+ |.+.|.+..... +.++.+ .
T Consensus 174 ~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~--~~~~~~------------------------------------~ 215 (398)
T cd03800 174 EAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAE--ARRARL------------------------------------L 215 (398)
T ss_pred HHHHHHHHccccccccEEECCCCCccceecccchh--hHHHhh------------------------------------c
Confidence 999998876543 7899999 777776543211 112111 1
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh----
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---- 328 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~---- 328 (414)
.++++ .+++++||+.+.||++.+++|+..+.++ .++++|+|+|+|+..
T Consensus 216 ~~~~~-~~i~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~~~~~~~~~ 267 (398)
T cd03800 216 RDPDK-PRILAVGRLDPRKGIDTLIRAYAELPEL---------------------------RERANLVIVGGPRDDILAM 267 (398)
T ss_pred cCCCC-cEEEEEcccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEECCCCcchhh
Confidence 23344 4899999999999999999999998763 578999999998753
Q ss_pred --HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 329 --ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 329 --e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+.+++.++++++. +|.|+| +++.+++..+|+.||++++|+. .+++|++++|||+||+|||+++.+|
T Consensus 268 ~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~adi~l~ps~---~e~~~~~l~Ea~a~G~Pvi~s~~~~ 336 (398)
T cd03800 268 DEEELRELARELGVIDRVDFPG-RVSREDLPALYRAADVFVNPAL---YEPFGLTALEAMACGLPVVATAVGG 336 (398)
T ss_pred hhHHHHHHHHhcCCCceEEEec-cCCHHHHHHHHHhCCEEEeccc---ccccCcHHHHHHhcCCCEEECCCCC
Confidence 3457788889987 999997 9999999999999999998643 3678999999999999999998764
No 19
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.97 E-value=1.2e-28 Score=245.97 Aligned_cols=282 Identities=17% Similarity=0.211 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcC
Q 015058 21 MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIA 100 (414)
Q Consensus 21 ~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~ 100 (414)
+...++.|.+ .++|+|+|..... ....++++++.+.|.. ... ....+..+.. -+.+..+..
T Consensus 22 v~~l~~~l~~--~~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~----~~~~~~~~~ 82 (388)
T TIGR02149 22 VEELTRELAR--LMDVDVRCFGDQR-----FDSEGLTVKGYRPWSE----LKE----ANKALGTFSV----DLAMANDPV 82 (388)
T ss_pred HHHHHHHHHH--hcCeeEEcCCCch-----hcCCCeEEEEecChhh----ccc----hhhhhhhhhH----HHHHhhCCC
Confidence 3344455544 2788998876432 2356788888763211 111 1111111111 111222335
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHH
Q 015058 101 SPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHE 180 (414)
Q Consensus 101 ~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~ 180 (414)
++|+||+|++ ...+++.+++++.++|+|+++|+.... ............++..|+|+...+.||.++|+|+.+++.
T Consensus 83 ~~divh~~~~---~~~~~~~~~~~~~~~p~v~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 158 (388)
T TIGR02149 83 DADVVHSHTW---YTFLAGHLAKKLYDKPLVVTAHSLEPL-RPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMRED 158 (388)
T ss_pred CCCeEeecch---hhhhHHHHHHHhcCCCEEEEeeccccc-ccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHHH
Confidence 7999999986 344556677777899999999987321 000000001113456788999999999999999999999
Q ss_pred HHHhh-CCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 181 LAQNW-GIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 181 l~~~~-gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+.+ +++ +.+|||+ |.+.|.|.. +...++++ ++++
T Consensus 159 ~~~~~~~~~~~~i~vi~ng~~~~~~~~~~---~~~~~~~~------------------------------------~~~~ 199 (388)
T TIGR02149 159 ILKYYPDLDPEKVHVIYNGIDTKEYKPDD---GNVVLDRY------------------------------------GIDR 199 (388)
T ss_pred HHHHcCCCCcceEEEecCCCChhhcCCCc---hHHHHHHh------------------------------------CCCC
Confidence 98876 443 7899999 777776643 23344443 2444
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh----HHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK----ESY 331 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~----e~l 331 (414)
+++ +++++||+.++||++.|++|++.+. ++++++|+|+|++. +++
T Consensus 200 ~~~-~i~~~Grl~~~Kg~~~li~a~~~l~------------------------------~~~~l~i~g~g~~~~~~~~~~ 248 (388)
T TIGR02149 200 SRP-YILFVGRITRQKGVPHLLDAVHYIP------------------------------KDVQVVLCAGAPDTPEVAEEV 248 (388)
T ss_pred Cce-EEEEEcccccccCHHHHHHHHHHHh------------------------------hcCcEEEEeCCCCcHHHHHHH
Confidence 554 8999999999999999999998874 25788999888764 445
Q ss_pred HHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 332 EEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 332 ~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++.+++++.. +|.|.+++++.++++.+|++||++|+++ ..+++|..++|||+||+|||+++++|
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps---~~e~~g~~~lEA~a~G~PvI~s~~~~ 314 (388)
T TIGR02149 249 RQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPS---IYEPLGIVNLEAMACGTPVVASATGG 314 (388)
T ss_pred HHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCC---ccCCCChHHHHHHHcCCCEEEeCCCC
Confidence 5556666663 6888877899999999999999999763 24678999999999999999999765
No 20
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=4.3e-28 Score=236.46 Aligned_cols=274 Identities=16% Similarity=0.114 Sum_probs=193.3
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 015058 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (414)
Q Consensus 23 ~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~ 102 (414)
..+.+|.++ ||+|++++........ .....++++++++. .... ....... ..+.. + ..+..+|
T Consensus 22 ~l~~~L~~~-g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~~~----~~~~~-----~--~~~~~~~ 84 (357)
T cd03795 22 DLAEGLAAR-GIEVAVLCASPEPKGR-DEERNGHRVIRAPS--LLNV--ASTPFSP----SFFKQ-----L--KKLAKKA 84 (357)
T ss_pred HHHHHHHhC-CCceEEEecCCCCcch-hhhccCceEEEeec--cccc--ccccccH----HHHHH-----H--HhcCCCC
Confidence 455677775 9999999987543222 22345667777762 2111 0011000 00000 0 0134799
Q ss_pred cEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHH
Q 015058 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELA 182 (414)
Q Consensus 103 Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~ 182 (414)
|+||+|.+... .....+.. ..+.|.++++|+... ....+..++.++++++.+.||.++++|+.+++.+.
T Consensus 85 Dii~~~~~~~~--~~~~~~~~-~~~~~~i~~~h~~~~--------~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~ 153 (357)
T cd03795 85 DVIHLHFPNPL--ADLALLLL-PRKKPVVVHWHSDIV--------KQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSP 153 (357)
T ss_pred CEEEEecCcch--HHHHHHHh-ccCceEEEEEcChhh--------ccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHH
Confidence 99999987422 22222222 257899999998543 12234566778889999999999999999999877
Q ss_pred HhhCC--cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCe
Q 015058 183 QNWGI--KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPA 259 (414)
Q Consensus 183 ~~~gi--~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (414)
..+.. ++.++||+ +.+.|.+.... +. . ++ ....+. +
T Consensus 154 ~~~~~~~~~~~i~~gi~~~~~~~~~~~-~~--~-~~------------------------------------~~~~~~-~ 192 (357)
T cd03795 154 VLRRFRDKVRVIPLGLDPARYPRPDAL-EE--A-IW------------------------------------RRAAGR-P 192 (357)
T ss_pred HhcCCccceEEecCCCChhhcCCcchh-hh--H-hh------------------------------------cCCCCC-c
Confidence 65443 48899999 66666554311 11 0 10 112233 5
Q ss_pred EEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcC
Q 015058 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR 339 (414)
Q Consensus 260 ~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~ 339 (414)
.++++||+.+.||++.+++|++.+. +++|+|+|+|+..+.+++.+++++
T Consensus 193 ~i~~~G~~~~~K~~~~li~a~~~l~-------------------------------~~~l~i~G~g~~~~~~~~~~~~~~ 241 (357)
T cd03795 193 FFLFVGRLVYYKGLDVLLEAAAALP-------------------------------DAPLVIVGEGPLEAELEALAAALG 241 (357)
T ss_pred EEEEecccccccCHHHHHHHHHhcc-------------------------------CcEEEEEeCChhHHHHHHHHHhcC
Confidence 8999999999999999999998762 599999999999999999999999
Q ss_pred CC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+. +|+|.| +++++++..+|++||++++|+.+ ..+++|++++|||+||+|||+++.++
T Consensus 242 ~~~~V~~~g-~v~~~~~~~~~~~ad~~i~ps~~-~~e~~g~~~~Ea~~~g~Pvi~~~~~~ 299 (357)
T cd03795 242 LLDRVRFLG-RLDDEEKAALLAACDVFVFPSVE-RSEAFGIVLLEAMAFGKPVISTEIGT 299 (357)
T ss_pred CcceEEEcC-CCCHHHHHHHHHhCCEEEeCCcc-cccccchHHHHHHHcCCCEEecCCCC
Confidence 88 999997 99999999999999999987532 35789999999999999999998664
No 21
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.97 E-value=2.5e-28 Score=254.33 Aligned_cols=225 Identities=17% Similarity=0.149 Sum_probs=161.2
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh-----cCCeEEEEEcCcchhh-h---hhc-cCCC-cHH--HHH--H--HHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL-----RRSAFIVDWHNFGYTL-L---SLS-LGRR-SHF--VSI--Y--RWIEKY 162 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~-----~~~~~Iv~~H~~~~~l-~---~~~-~~~~-~~~--~~i--~--~~~Ek~ 162 (414)
.+|||||+|.+ ++++++.+++.. .++|+|+|.|+..+.- . .+. .+.. ..+ ..+ + ..+.+.
T Consensus 117 ~~pDiiH~h~w---~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T PRK00654 117 PRPDIVHAHDW---HTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKA 193 (466)
T ss_pred CCCceEEECCc---HHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHH
Confidence 59999999997 666666666643 3799999999985410 0 000 0000 000 000 0 122355
Q ss_pred HhccCCEEEEeCHHHHHHHHHh-hC-----------CcEEEecCC-CCCCcCCCCh----------------HHHHHHHH
Q 015058 163 YGKMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSL----------------EEKHELFC 213 (414)
Q Consensus 163 ~~k~ad~ii~vS~~~~~~l~~~-~g-----------i~i~vI~n~-~~~~f~p~~~----------------~~~~~l~~ 213 (414)
..+.||.|+|+|+.+++++.+. +| .++.+|+|| |.+.|.|... +.+.++++
T Consensus 194 ~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 273 (466)
T PRK00654 194 GLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQE 273 (466)
T ss_pred HHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHH
Confidence 6789999999999999988642 21 248899999 8888887531 11233444
Q ss_pred HhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC-CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhc
Q 015058 214 RLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILN 292 (414)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~ 292 (414)
++ ++++ +.| +|+++||+.++||++.|++|++.+.+
T Consensus 274 ~~------------------------------------gl~~~~~~-~i~~vGRl~~~KG~~~li~a~~~l~~------- 309 (466)
T PRK00654 274 RF------------------------------------GLPDDDAP-LFAMVSRLTEQKGLDLVLEALPELLE------- 309 (466)
T ss_pred Hh------------------------------------CCCCCCCc-EEEEeeccccccChHHHHHHHHHHHh-------
Confidence 43 3443 444 89999999999999999999998864
Q ss_pred cCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeecc
Q 015058 293 EDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT 370 (414)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~ 370 (414)
.+++|+|+|+|+. ++++++++++++. +|.+.+++ +.++++.+|++||++|+|+
T Consensus 310 ----------------------~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~~~g~-~~~~~~~~~~~aDv~v~PS- 364 (466)
T PRK00654 310 ----------------------QGGQLVLLGTGDPELEEAFRALAARYPG-KVGVQIGY-DEALAHRIYAGADMFLMPS- 364 (466)
T ss_pred ----------------------cCCEEEEEecCcHHHHHHHHHHHHHCCC-cEEEEEeC-CHHHHHHHHhhCCEEEeCC-
Confidence 2689999999963 5788999988875 46654435 6667889999999999873
Q ss_pred CCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 371 SSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 371 s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
..|++|+.++|||+||+|+|+++++|
T Consensus 365 --~~E~~gl~~lEAma~G~p~V~~~~gG 390 (466)
T PRK00654 365 --RFEPCGLTQLYALRYGTLPIVRRTGG 390 (466)
T ss_pred --CCCCchHHHHHHHHCCCCEEEeCCCC
Confidence 35789999999999999999998876
No 22
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=3.3e-28 Score=264.57 Aligned_cols=228 Identities=18% Similarity=0.160 Sum_probs=168.2
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEE-EEcCcchhhhhhccCCCcHHHHHHHHHHHH-HhccCCEEEEeCH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKY-YGKMANGCLCVTQ 175 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv-~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~-~~k~ad~ii~vS~ 175 (414)
+..+|||||+|++ .+.+++.+++++.++|+|+ ++|+++.. . ....+...++.+-+. ....++.+++.|+
T Consensus 397 k~~kpDIVH~h~~---~a~~lg~lAa~~~gvPvIv~t~h~~~~~-----~-~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~ 467 (694)
T PRK15179 397 RSSVPSVVHIWQD---GSIFACALAALLAGVPRIVLSVRTMPPV-----D-RPDRYRVEYDIIYSELLKMRGVALSSNSQ 467 (694)
T ss_pred HHcCCcEEEEeCC---cHHHHHHHHHHHcCCCEEEEEeCCCccc-----c-chhHHHHHHHHHHHHHHhcCCeEEEeCcH
Confidence 3479999999987 5566777888888999876 56775321 1 111111122222122 2224567788888
Q ss_pred HHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 176 AMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 176 ~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
..++.+.+.++++ +.||||| |++.|.|.... + ..+.++. .
T Consensus 468 ~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~-~-~~~~~~~----------------------------------~ 511 (694)
T PRK15179 468 FAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDAC-T-AMMAQFD----------------------------------A 511 (694)
T ss_pred HHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchh-h-HHHHhhc----------------------------------c
Confidence 8888887777775 8999999 77777654321 1 1111111 0
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHH
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l 331 (414)
..+.+. ++|+++||+.+.||++.||+|+..+.++ .|+++|+|+|+|++++++
T Consensus 512 ~~~~~~-~vIg~VGRL~~~KG~~~LI~A~a~l~~~---------------------------~p~~~LvIvG~G~~~~~L 563 (694)
T PRK15179 512 RTSDAR-FTVGTVMRVDDNKRPFLWVEAAQRFAAS---------------------------HPKVRFIMVGGGPLLESV 563 (694)
T ss_pred ccCCCC-eEEEEEEeCCccCCHHHHHHHHHHHHHH---------------------------CcCeEEEEEccCcchHHH
Confidence 122233 4899999999999999999999988763 688999999999999999
Q ss_pred HHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc--------ccc
Q 015058 332 EEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV--------VGC 402 (414)
Q Consensus 332 ~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~--------~~~ 402 (414)
+++++++|++ +|+|+| + .+|++.+|++||++|+++ ..+++|++++|||+||+|||+|+++|. +|.
T Consensus 564 ~~l~~~lgL~~~V~flG-~--~~dv~~ll~aaDv~VlpS---~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~Gl 637 (694)
T PRK15179 564 REFAQRLGMGERILFTG-L--SRRVGYWLTQFNAFLLLS---RFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGL 637 (694)
T ss_pred HHHHHHcCCCCcEEEcC-C--cchHHHHHHhcCEEEecc---ccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEE
Confidence 9999999998 999998 4 578999999999999763 357899999999999999999998763 577
Q ss_pred hh
Q 015058 403 LF 404 (414)
Q Consensus 403 ~~ 404 (414)
++
T Consensus 638 Lv 639 (694)
T PRK15179 638 TL 639 (694)
T ss_pred Ee
Confidence 66
No 23
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=9.4e-28 Score=230.22 Aligned_cols=294 Identities=18% Similarity=0.147 Sum_probs=207.0
Q ss_pred EEEEEEeCCCCCChHH-HHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHH
Q 015058 6 RACVVVLGDLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~-~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~ 84 (414)
.+.++...+.|+..++ ...++.|.++ |++|++++..............+++++.++ .... . ........+.+.
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~--~~~~--~-~~~~~~~~~~~~ 75 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRD-RFEHVVISLTDRGELGEELEEAGVPVYCLG--KRPG--R-PDPGALLRLYKL 75 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhc-cceEEEEecCcchhhhHHHHhcCCeEEEEe--cccc--c-ccHHHHHHHHHH
Confidence 3455555555544443 3556677665 999999997654433333345688888887 2211 0 111111111111
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHH
Q 015058 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (414)
Q Consensus 85 l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~ 163 (414)
+ +..+||+||++.+. ....+.++.+. .+.|++.+.|+..... .........++++.+
T Consensus 76 -----------~-~~~~~div~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~ 133 (365)
T cd03807 76 -----------I-RRLRPDVVHTWMYH---ADLYGGLAARLAGVPPVIWGIRHSDLDL-------GKKSTRLVARLRRLL 133 (365)
T ss_pred -----------H-HhhCCCEEEecccc---ccHHHHHHHHhcCCCcEEEEecCCcccc-------cchhHhHHHHHHHHh
Confidence 1 23799999999762 23333344444 6788999999975421 123344566778888
Q ss_pred hccCCEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCc
Q 015058 164 GKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKAD 239 (414)
Q Consensus 164 ~k~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (414)
.+.+|.++++|+.+++.+.+. +.+ +.++||+ +...|.+... .+...++++
T Consensus 134 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~------------------------ 187 (365)
T cd03807 134 SSFIPLIVANSAAAAEYHQAI-GYPPKKIVVIPNGVDTERFSPDLD-ARARLREEL------------------------ 187 (365)
T ss_pred ccccCeEEeccHHHHHHHHHc-CCChhheeEeCCCcCHHhcCCccc-chHHHHHhc------------------------
Confidence 899999999999999988764 553 7889999 6666655432 222333332
Q ss_pred cceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEE
Q 015058 240 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 319 (414)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~l 319 (414)
+++++. .+++++|++.+.||++.+++|+..+.++ .++++|
T Consensus 188 ------------~~~~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l 227 (365)
T cd03807 188 ------------GLPEDT-FLIGIVARLHPQKDHATLLRAAALLLKK---------------------------FPNARL 227 (365)
T ss_pred ------------CCCCCC-eEEEEecccchhcCHHHHHHHHHHHHHh---------------------------CCCeEE
Confidence 344444 5899999999999999999999998762 578999
Q ss_pred EEEcCCCChHHHHHHHH-HcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 320 IITGKGPDKESYEEKIR-RLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 320 iI~G~G~~~e~l~~~i~-~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+|+|+|+..+.+++..+ ++++. +|.|.| +.+|++.+|+.||++++|+. .+++|++++|||+||+|||+++.+
T Consensus 228 ~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g---~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~g~PvI~~~~~ 301 (365)
T cd03807 228 LLVGDGPDRANLELLALKELGLEDKVILLG---ERSDVPALLNALDVFVLSSL---SEGFPNVLLEAMACGLPVVATDVG 301 (365)
T ss_pred EEecCCcchhHHHHHHHHhcCCCceEEEcc---ccccHHHHHHhCCEEEeCCc---cccCCcHHHHHHhcCCCEEEcCCC
Confidence 99999999888888887 88888 999998 67899999999999998743 368999999999999999999877
Q ss_pred Cc
Q 015058 398 SV 399 (414)
Q Consensus 398 ~~ 399 (414)
+.
T Consensus 302 ~~ 303 (365)
T cd03807 302 DN 303 (365)
T ss_pred Ch
Confidence 64
No 24
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=8.2e-28 Score=231.93 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=200.2
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~ 96 (414)
.+.++...++.|+++ ||+|++++.......... ....+...... .. . ..+. .....+...+.. .
T Consensus 16 ~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~--~~--~-~~~~--------~~~~~~~~~~~~-~ 79 (374)
T cd03817 16 VATSIRRLAEELEKR-GHEVYVVAPSYPGAPEEE-EVVVVRPFRVP--TF--K-YPDF--------RLPLPIPRALII-I 79 (374)
T ss_pred eehHHHHHHHHHHHc-CCeEEEEeCCCCCCCccc-ccccccccccc--cc--h-hhhh--------hccccHHHHHHH-H
Confidence 345677788888886 999999997654321111 11111111111 00 0 0000 000011111111 1
Q ss_pred hhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHH-HHHHHHhccCCEEEEeCH
Q 015058 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYR-WIEKYYGKMANGCLCVTQ 175 (414)
Q Consensus 97 ~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~-~~Ek~~~k~ad~ii~vS~ 175 (414)
.+..+||+||++++. .....+..+++..++|+|.++|+..................... ++++++.+.||.++|+|+
T Consensus 80 ~~~~~~Div~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPF--SLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCch--hhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 234799999999872 33345556667789999999998743211100111122222333 678889999999999999
Q ss_pred HHHHHHHHhhCCc--EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccc
Q 015058 176 AMQHELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (414)
Q Consensus 176 ~~~~~l~~~~gi~--i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (414)
.+++.+.+. +.+ +.++||+ +.+.|.+.... ..++++ +
T Consensus 158 ~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~------------------------------------~ 197 (374)
T cd03817 158 KIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGD---DERRKL------------------------------------G 197 (374)
T ss_pred HHHHHHHhc-CCCCceEEcCCccchhccCccchh---HHHHhc------------------------------------C
Confidence 999988764 554 7899999 76667655321 122221 2
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
+.++ ++.++++|++.+.||++.+++|++.+.++ .++++|+++|+|+..++++
T Consensus 198 ~~~~-~~~i~~~G~~~~~k~~~~l~~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~ 249 (374)
T cd03817 198 IPED-EPVLLYVGRLAKEKNIDFLIRAFARLLKE---------------------------EPDVKLVIVGDGPEREELE 249 (374)
T ss_pred CCCC-CeEEEEEeeeecccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchHHHHH
Confidence 2333 35899999999999999999999998762 4789999999999999999
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+.++++++. +|.|+| +++.++++.+|+.||++++++. .+++|.+++|||+||+|||+++.++.
T Consensus 250 ~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~ad~~l~~s~---~e~~~~~~~Ea~~~g~PvI~~~~~~~ 313 (374)
T cd03817 250 ELARELGLADRVIFTG-FVPREELPDYYKAADLFVFAST---TETQGLVLLEAMAAGLPVVAVDAPGL 313 (374)
T ss_pred HHHHHcCCCCcEEEec-cCChHHHHHHHHHcCEEEeccc---ccCcChHHHHHHHcCCcEEEeCCCCh
Confidence 999999998 999997 9999999999999999997643 35689999999999999999998764
No 25
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=1.1e-27 Score=233.95 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=167.0
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
..+||+||+|.+ ....++.++++. .+.|++++.|+... .. +...+..++..+.++.++++|+..
T Consensus 77 ~~~pdiv~~~~~---~~~~~~~l~~~~~~~~~~v~~~h~~~~---------~~---~~~~~~~~~~~~~~~~~~~~s~~~ 141 (360)
T cd04951 77 QFKPDVVHAHMF---HANIFARLLRLFLPSPPLICTAHSKNE---------GG---RLRMLAYRLTDFLSDLTTNVSKEA 141 (360)
T ss_pred hcCCCEEEEccc---chHHHHHHHHhhCCCCcEEEEeeccCc---------hh---HHHHHHHHHHhhccCceEEEcHHH
Confidence 379999999986 333444444443 46788999998642 11 122344566667889999999999
Q ss_pred HHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc
Q 015058 178 QHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (414)
Q Consensus 178 ~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (414)
++.+.+..+++ +.++||+ +...|.+... .+...++++ ++
T Consensus 142 ~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~-~~~~~~~~~------------------------------------~~ 184 (360)
T cd04951 142 LDYFIASKAFNANKSFVVYNGIDTDRFRKDPA-RRLKIRNAL------------------------------------GV 184 (360)
T ss_pred HHHHHhccCCCcccEEEEccccchhhcCcchH-HHHHHHHHc------------------------------------Cc
Confidence 99998774443 8899999 6666765432 233344332 34
Q ss_pred CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 254 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 254 ~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
++++ .+++++|++.+.||++.+++|+..+.+ ..|+++|+|+|+|+.++++++
T Consensus 185 ~~~~-~~~l~~g~~~~~kg~~~li~a~~~l~~---------------------------~~~~~~l~i~G~g~~~~~~~~ 236 (360)
T cd04951 185 KNDT-FVILAVGRLVEAKDYPNLLKAFAKLLS---------------------------DYLDIKLLIAGDGPLRATLER 236 (360)
T ss_pred CCCC-EEEEEEeeCchhcCcHHHHHHHHHHHh---------------------------hCCCeEEEEEcCCCcHHHHHH
Confidence 4455 489999999999999999999998875 357899999999999999999
Q ss_pred HHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 334 KIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 334 ~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
.++++++. +|.|.| +.++++.+|+.||++++++. .+++|.+++|||++|+|||+++.++.
T Consensus 237 ~~~~~~~~~~v~~~g---~~~~~~~~~~~ad~~v~~s~---~e~~~~~~~Ea~a~G~PvI~~~~~~~ 297 (360)
T cd04951 237 LIKALGLSNRVKLLG---LRDDIAAYYNAADLFVLSSA---WEGFGLVVAEAMACELPVVATDAGGV 297 (360)
T ss_pred HHHhcCCCCcEEEec---ccccHHHHHHhhceEEeccc---ccCCChHHHHHHHcCCCEEEecCCCh
Confidence 99999998 899998 67899999999999997643 46899999999999999999998765
No 26
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.96 E-value=1.8e-27 Score=264.98 Aligned_cols=322 Identities=16% Similarity=0.088 Sum_probs=207.7
Q ss_pred HHHHHHHhhCC--CcEEEEecCCCCCC-------c--------------ccccCCCeEEEEeecCCCCC-CCCCCchHHH
Q 015058 23 YQALSLARQMS--LEVDVVAYGGSKPH-------A--------------AILEHPSIHIHTMTQWPTIP-RGLPKVLKPV 78 (414)
Q Consensus 23 ~~a~~La~~~g--~eV~vv~~~~~~~~-------~--------------~~~~~~~i~i~~v~~~~~~~-~~~~~~~~~~ 78 (414)
..|.+|++. | |+|+|+|.....+. + .....+|+.|+++| ..+. +..++-
T Consensus 203 ELAraLa~~-~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip--~GP~~~~l~Ke---- 275 (1050)
T TIGR02468 203 ELARALGSM-PGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIP--FGPRDKYIPKE---- 275 (1050)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEec--cCCCCCCcCHH----
Confidence 456777774 8 89999998754321 0 11123699999998 3332 112221
Q ss_pred HHHHHHHHHHHHHHH-HHhh------------hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhh--
Q 015058 79 LLLLKPLIQFFMLLW-FLCV------------KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS-- 143 (414)
Q Consensus 79 ~~l~k~l~~~~~l~~-~l~~------------k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~-- 143 (414)
.++..+..|..-+. ++.. ....||+||+|+. .++.++..+++..++|+|+|.|..+-.-..
T Consensus 276 -~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw---~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~l 351 (1050)
T TIGR02468 276 -ELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYA---DAGDSAALLSGALNVPMVLTGHSLGRDKLEQL 351 (1050)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcc---hHHHHHHHHHHhhCCCEEEECccchhhhhhhh
Confidence 12223333222111 1110 0124999999987 677788888998999999999987422110
Q ss_pred hccCC---CcH--HHHHH--HHHHHHHhccCCEEEEeCHHHHHHHHHhhC----------------------C---cEEE
Q 015058 144 LSLGR---RSH--FVSIY--RWIEKYYGKMANGCLCVTQAMQHELAQNWG----------------------I---KATV 191 (414)
Q Consensus 144 ~~~~~---~~~--~~~i~--~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~g----------------------i---~i~v 191 (414)
+..+. ... .+++. ...|+.....||.|||.|+.+++++...|+ . ++.|
T Consensus 352 l~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~V 431 (1050)
T TIGR02468 352 LKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAV 431 (1050)
T ss_pred cccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEE
Confidence 00111 000 01111 235889999999999999999998666553 1 4789
Q ss_pred ecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCC
Q 015058 192 LYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPD 270 (414)
Q Consensus 192 I~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~ 270 (414)
|||| |++.|.|.+.+...+ .++.. + .+...+..+. ..... ...++++| +|+++||+.++
T Consensus 432 IPpGVD~~~F~P~~~~~~~~---~~~~~--------~------~~~~~~~~~~-~~l~r-~~~~pdkp-vIL~VGRL~p~ 491 (1050)
T TIGR02468 432 IPPGMEFSHIVPHDGDMDGE---TEGNE--------E------HPAKPDPPIW-SEIMR-FFTNPRKP-MILALARPDPK 491 (1050)
T ss_pred eCCCCcHHHccCCCccccch---hcccc--------c------ccccccchhh-HHHHh-hcccCCCc-EEEEEcCCccc
Confidence 9999 889999864321100 00000 0 0000000000 00000 11345665 89999999999
Q ss_pred CChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh-----------HHHHHHHHHcC
Q 015058 271 EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----------ESYEEKIRRLR 339 (414)
Q Consensus 271 Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~-----------e~l~~~i~~l~ 339 (414)
||++.||+|+..+++. ...+++. +|+|+|++. +++++++++++
T Consensus 492 KGi~~LIeAf~~L~~l-------------------------~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 492 KNITTLVKAFGECRPL-------------------------RELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred cCHHHHHHHHHHhHhh-------------------------ccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 9999999999998642 0235666 467887643 45778999999
Q ss_pred CC-cEEEecCCCChhhHHHHHhhc----cEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC--------cccchhh
Q 015058 340 LK-RVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS--------VVGCLFV 405 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~~~~l~~a----Dl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~--------~~~~~~~ 405 (414)
+. +|+|.| ++++++++.+|+.| |+||+|+ ..|+||++++||||||+|||+|+++| ++|++|.
T Consensus 546 L~g~V~FlG-~v~~edvp~lYr~Ad~s~DVFV~PS---~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVd 620 (1050)
T TIGR02468 546 LYGQVAYPK-HHKQSDVPDIYRLAAKTKGVFINPA---FIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVD 620 (1050)
T ss_pred CCCeEEecC-CCCHHHHHHHHHHhhhcCCeeeCCc---ccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEEC
Confidence 98 999997 99999999999988 6999763 35889999999999999999999876 4677764
No 27
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.96 E-value=2.5e-27 Score=240.15 Aligned_cols=300 Identities=15% Similarity=0.088 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 015058 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (414)
Q Consensus 19 ~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k 98 (414)
+.....|..|+++ ||+|+++|..+..... . ++++++++......++.......+...+......+...+.+..+
T Consensus 11 ~~~~~la~~L~~~-G~~v~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
T cd03818 11 GQFRHLAPALAAQ-GHEVVFLTEPNAAPPP----G-GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAK 84 (396)
T ss_pred hhHHHHHHHHHHC-CCEEEEEecCCCCCCC----C-CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4456689999997 9999999987643111 1 79999988332211111111111111111111222222222233
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHh-hcCCeEEEEEcCcchhh-hhhccC---CCcH--HH--HHHHHHHHHHhccCCE
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTL-LSLSLG---RRSH--FV--SIYRWIEKYYGKMANG 169 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~-~~~~~~Iv~~H~~~~~l-~~~~~~---~~~~--~~--~i~~~~Ek~~~k~ad~ 169 (414)
..+||+||+|.-. . .+.+++. +.++|+|...|.+.... ....+. ..+. .. +...++.....+.||.
T Consensus 85 ~~~pdvi~~h~~~--~---~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 159 (396)
T cd03818 85 GFRPDVIVAHPGW--G---ETLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADA 159 (396)
T ss_pred CCCCCEEEECCcc--c---hhhhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCE
Confidence 4689999999641 1 2223333 35688887554221000 000011 1111 01 1112224456789999
Q ss_pred EEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccc
Q 015058 170 CLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAG 248 (414)
Q Consensus 170 ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (414)
+||+|+.+++.+.+.++-++.+|||| |.+.|.|.... ....+.
T Consensus 160 vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~-~~~~~~----------------------------------- 203 (396)
T cd03818 160 GVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQA-RLRLPN----------------------------------- 203 (396)
T ss_pred EECCCHHHHhhCcHhhccceEEeCCCccccccCCCchh-hhcccc-----------------------------------
Confidence 99999999998877666669999999 88888876421 111110
Q ss_pred cccccCCCCCeEEEEecc-CCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC
Q 015058 249 IDVFLKPNRPALVVSSTS-WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 327 (414)
Q Consensus 249 ~~~~l~~~~~~~i~~vgr-l~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~ 327 (414)
...+.++++ +|+|+|| +.+.||++.|++|+..+.++ .|+++|+|+|+|..
T Consensus 204 -~~~~~~~~~-~i~~vgR~l~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~lvivG~~~~ 254 (396)
T cd03818 204 -GRVLTPGDE-VITFVARNLEPYRGFHVFMRALPRLLRA---------------------------RPDARVVIVGGDGV 254 (396)
T ss_pred -cccCCCCCe-EEEEECCCcccccCHHHHHHHHHHHHHH---------------------------CCCcEEEEEcCCCc
Confidence 011334443 8999997 99999999999999988763 68999999997421
Q ss_pred --------hH-HHHHHHHHcC----CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 328 --------KE-SYEEKIRRLR----LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 328 --------~e-~l~~~i~~l~----l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
.+ ..++.+++++ ..+|+|+| +++.++++.+|++||++|+++. .+++|++++||||||+|||+|
T Consensus 255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G-~v~~~~~~~~l~~adv~v~~s~---~e~~~~~llEAmA~G~PVIas 330 (396)
T cd03818 255 SYGAPPPDGESWKQHMLDELGGRLDLSRVHFLG-RVPYDQYLALLQVSDVHVYLTY---PFVLSWSLLEAMACGCLVVGS 330 (396)
T ss_pred ccCCCCCCcccHHHHHHHHhhcccCcceEEEeC-CCCHHHHHHHHHhCcEEEEcCc---ccccchHHHHHHHCCCCEEEc
Confidence 11 2333444444 35999997 9999999999999999997643 467899999999999999999
Q ss_pred eeCC
Q 015058 395 WTCS 398 (414)
Q Consensus 395 ~~~~ 398 (414)
+++|
T Consensus 331 ~~~g 334 (396)
T cd03818 331 DTAP 334 (396)
T ss_pred CCCC
Confidence 9876
No 28
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.96 E-value=4.9e-27 Score=228.81 Aligned_cols=276 Identities=17% Similarity=0.099 Sum_probs=193.8
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~ 96 (414)
....+..++.+|.++ ||+|+|++.......... .. ..... . .. ......+..+.....+ +..+
T Consensus 13 ~~~~~~~~~~~L~~~-g~~v~v~~~~~~~~~~~~---~~--~~~~~---~------~~-~~~~~~~~~~~~~~~~-~~~~ 75 (355)
T cd03799 13 SETFILREILALEAA-GHEVEIFSLRPPEDTLVH---PE--DRAEL---A------RT-RYLARSLALLAQALVL-AREL 75 (355)
T ss_pred chHHHHHHHHHHHhC-CCeEEEEEecCccccccc---cc--ccccc---c------ch-HHHHHHHHHHHHHHHH-HHHH
Confidence 456788899999996 999999997654211110 00 00000 0 00 0001111111111111 1111
Q ss_pred hhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 97 ~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
+..+||+||+|.+. ....++.+.++..++|++++.|+.... ..... +.++...+.+|.++|+|+.
T Consensus 76 -~~~~~Dii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~vi~~s~~ 140 (355)
T cd03799 76 -RRLGIDHIHAHFGT--TPATVAMLASRLGGIPYSFTAHGKDIF------RSPDA------IDLDEKLARADFVVAISEY 140 (355)
T ss_pred -HhcCCCEEEECCCC--chHHHHHHHHHhcCCCEEEEEeccccc------ccCch------HHHHHHHhhCCEEEECCHH
Confidence 34799999999863 334455566666789999999976421 11111 4556677899999999999
Q ss_pred HHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccc
Q 015058 177 MQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (414)
Q Consensus 177 ~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (414)
+++.+.+.++.+ +.++||+ |.+.|.+.. . .
T Consensus 141 ~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-------~-~-------------------------------------- 174 (355)
T cd03799 141 NRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-------P-P-------------------------------------- 174 (355)
T ss_pred HHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-------c-c--------------------------------------
Confidence 999998864443 8899999 555453331 0 0
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
.. +.++.|+++|++.+.||++.+++|++.+.+ ..++++|+|+|+|+..+.++
T Consensus 175 ~~-~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~ 226 (355)
T cd03799 175 PP-GEPLRILSVGRLVEKKGLDYLLEALALLKD---------------------------RGIDFRLDIVGDGPLRDELE 226 (355)
T ss_pred cc-CCCeEEEEEeeeccccCHHHHHHHHHHHhh---------------------------cCCCeEEEEEECCccHHHHH
Confidence 01 223588999999999999999999998875 25789999999999999999
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCC-C--CCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-~--g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+.++++++. +|+|.| +++.+++..+|++||++++++... . .+++|++++|||+||+|||++++++.
T Consensus 227 ~~~~~~~~~~~v~~~g-~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 296 (355)
T cd03799 227 ALIAELGLEDRVTLLG-AKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGI 296 (355)
T ss_pred HHHHHcCCCCeEEECC-cCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCc
Confidence 999999998 999997 999999999999999999864321 1 17899999999999999999998764
No 29
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=5.9e-27 Score=223.64 Aligned_cols=287 Identities=18% Similarity=0.184 Sum_probs=198.0
Q ss_pred EEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHH
Q 015058 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (414)
Q Consensus 9 v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~ 88 (414)
++....-|....+...++.|.++ ||+|++++....... .....+++++.++ ..... . .....+ ..+.++
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~-~-~~~~~~----~~~~~~ 72 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE--ELEALGVKVIPIP--LDRRG-I-NPFKDL----KALLRL 72 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc--ccccCCceEEecc--ccccc-c-ChHhHH----HHHHHH
Confidence 33333333445566778888785 999999997764422 3446788888887 22100 1 111111 111111
Q ss_pred HHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHh-hcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccC
Q 015058 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (414)
Q Consensus 89 ~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~-~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~a 167 (414)
. +. .+..+||+||++.. ....++.++++ ..+.+++.++|+..+.. ........++.+++++..+.+
T Consensus 73 ---~-~~-~~~~~~dvv~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 139 (359)
T cd03808 73 ---Y-RL-LRKERPDIVHTHTP---KPGILGRLAARLAGVPKVIYTVHGLGFVF-----TSGGLKRRLYLLLERLALRFT 139 (359)
T ss_pred ---H-HH-HHhcCCCEEEEccc---cchhHHHHHHHHcCCCCEEEEecCcchhh-----ccchhHHHHHHHHHHHHHhhc
Confidence 1 11 13479999999975 22334445555 45566777888875421 122224567788899999999
Q ss_pred CEEEEeCHHHHHHHHHhhCC---c-EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccce
Q 015058 168 NGCLCVTQAMQHELAQNWGI---K-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (414)
Q Consensus 168 d~ii~vS~~~~~~l~~~~gi---~-i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (414)
|.++++|+.+++.+.+.... + +.+++++ +.+.+.+....
T Consensus 140 d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 183 (359)
T cd03808 140 DKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP------------------------------------ 183 (359)
T ss_pred cEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc------------------------------------
Confidence 99999999999999887543 2 4555666 44444332100
Q ss_pred eeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEE
Q 015058 243 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT 322 (414)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~ 322 (414)
.+++ +..++++|++.+.||++.+++|++.+.+ .+++++|+|+
T Consensus 184 ----------~~~~-~~~i~~~G~~~~~k~~~~li~~~~~l~~---------------------------~~~~~~l~i~ 225 (359)
T cd03808 184 ----------IPED-DPVFLFVARLLKDKGIDELLEAARILKA---------------------------KGPNVRLLLV 225 (359)
T ss_pred ----------cCCC-CcEEEEEeccccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEE
Confidence 0123 3589999999999999999999999875 3678999999
Q ss_pred cCCCChHHHHHH-HHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 323 GKGPDKESYEEK-IRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 323 G~G~~~e~l~~~-i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
|.|+..+..+.. +++++.. +|.|.| ..+++..+|++||++++++. .+++|++++|||+||+|||+++.++.
T Consensus 226 G~~~~~~~~~~~~~~~~~~~~~v~~~g---~~~~~~~~~~~adi~i~ps~---~e~~~~~~~Ea~~~G~Pvi~s~~~~~ 298 (359)
T cd03808 226 GDGDEENPAAILEIEKLGLEGRVEFLG---FRDDVPELLAAADVFVLPSY---REGLPRVLLEAMAMGRPVIATDVPGC 298 (359)
T ss_pred cCCCcchhhHHHHHHhcCCcceEEEee---ccccHHHHHHhccEEEecCc---ccCcchHHHHHHHcCCCEEEecCCCc
Confidence 999987766654 7777777 999998 48899999999999997643 37899999999999999999988743
No 30
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.96 E-value=2.4e-27 Score=246.74 Aligned_cols=225 Identities=19% Similarity=0.115 Sum_probs=163.4
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcC---CeEEEEEcCcchhh-hh---hc-cCCC-cHH-HHH-----HHHHHHHHh
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR---SAFIVDWHNFGYTL-LS---LS-LGRR-SHF-VSI-----YRWIEKYYG 164 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~---~~~Iv~~H~~~~~l-~~---~~-~~~~-~~~-~~i-----~~~~Ek~~~ 164 (414)
.+|||||+|++ ++++++.+++...+ +|+|+|+|++.+.- .. +. .+.. ..+ ..- ...+++...
T Consensus 127 ~~~DiiH~hdw---~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 203 (473)
T TIGR02095 127 WQPDVVHAHDW---HTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGI 203 (473)
T ss_pred CCCCEEEECCc---HHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHH
Confidence 68999999997 66676766666554 89999999975310 00 00 0000 000 000 012345667
Q ss_pred ccCCEEEEeCHHHHHHHHHh-hC-----------CcEEEecCC-CCCCcCCCCh----------------HHHHHHHHHh
Q 015058 165 KMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSL----------------EEKHELFCRL 215 (414)
Q Consensus 165 k~ad~ii~vS~~~~~~l~~~-~g-----------i~i~vI~n~-~~~~f~p~~~----------------~~~~~l~~~l 215 (414)
+.||.++++|+.+++++.+. +| .++.+|+|| |.+.|.|... ..+..+++++
T Consensus 204 ~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~ 283 (473)
T TIGR02095 204 VYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEEL 283 (473)
T ss_pred HhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHc
Confidence 89999999999999888642 11 248899999 8888887531 1123344443
Q ss_pred hhhccCCCCccccccCCCCCCCCccceeeeccccccccCC--CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhcc
Q 015058 216 NKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP--NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 293 (414)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~ 293 (414)
++++ +++ +|+++||++++||++.|++|+..+.+
T Consensus 284 ------------------------------------gl~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~-------- 318 (473)
T TIGR02095 284 ------------------------------------GLPVDDDVP-LFGVISRLTQQKGVDLLLAALPELLE-------- 318 (473)
T ss_pred ------------------------------------CCCccCCCC-EEEEEecCccccChHHHHHHHHHHHH--------
Confidence 3433 454 89999999999999999999999874
Q ss_pred CCCchhhhhhhhhcCCccCCCCcEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccC
Q 015058 294 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS 371 (414)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~--~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s 371 (414)
.+++|+|+|+|+ .++++++++++++ .+|.|.+ ..+.++++.+|++||++++|+
T Consensus 319 ---------------------~~~~lvi~G~g~~~~~~~l~~~~~~~~-~~v~~~~-~~~~~~~~~~~~~aDv~l~pS-- 373 (473)
T TIGR02095 319 ---------------------LGGQLVVLGTGDPELEEALRELAERYP-GNVRVII-GYDEALAHLIYAGADFILMPS-- 373 (473)
T ss_pred ---------------------cCcEEEEECCCCHHHHHHHHHHHHHCC-CcEEEEE-cCCHHHHHHHHHhCCEEEeCC--
Confidence 249999999995 4567888877655 4788886 558888999999999999863
Q ss_pred CCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 372 SSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 372 ~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
..|++|.+++|||+||+|+|+++++|
T Consensus 374 -~~E~~gl~~lEAma~G~pvI~s~~gg 399 (473)
T TIGR02095 374 -RFEPCGLTQLYAMRYGTVPIVRRTGG 399 (473)
T ss_pred -CcCCcHHHHHHHHHCCCCeEEccCCC
Confidence 35789999999999999999999887
No 31
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.96 E-value=5.9e-27 Score=237.78 Aligned_cols=279 Identities=11% Similarity=0.073 Sum_probs=192.2
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCC-CC-CCCchHHHHHHHHHHHHHHHHHHH
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIP-RG-LPKVLKPVLLLLKPLIQFFMLLWF 94 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~-~~-~~~~~~~~~~l~k~l~~~~~l~~~ 94 (414)
..++++.+...++++..++|+++|....+........+|+.+|+++ .... .. ..+. ..+ ....+.. .+ +.
T Consensus 19 ~~g~ve~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~~~~~---~~-~~ 90 (380)
T PRK15484 19 GAAAVETWIYQVAKRTSIPNRIACIKNPGYPEYTKVNDNCDIHYIG--FSRIYKRLFQKW-TRL-DPLPYSQ---RI-LN 90 (380)
T ss_pred cccHHHHHHHHhhhhccCCeeEEEecCCCCCchhhccCCCceEEEE--eccccchhhhhh-hcc-CchhHHH---HH-HH
Confidence 4678999999988776779999998764412222456778888886 2111 00 0110 000 0011111 11 11
Q ss_pred Hh--hhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEE
Q 015058 95 LC--VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (414)
Q Consensus 95 l~--~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~ 172 (414)
.+ .+..++|+||+|+. +. ....+..+..+.|+++++|+... .. ..+.++.+++
T Consensus 91 ~~~~~~~~~~~vi~v~~~---~~-~~~~~~~~~~~~~~v~~~h~~~~---------~~------------~~~~~~~ii~ 145 (380)
T PRK15484 91 IAHKFTITKDSVIVIHNS---MK-LYRQIRERAPQAKLVMHMHNAFE---------PE------------LLDKNAKIIV 145 (380)
T ss_pred HHHhcCCCCCcEEEEeCc---HH-hHHHHHhhCCCCCEEEEEecccC---------hh------------HhccCCEEEE
Confidence 12 12357999999997 22 23445556678899999998621 10 1136799999
Q ss_pred eCHHHHHHHHHhhCC-cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccc
Q 015058 173 VTQAMQHELAQNWGI-KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID 250 (414)
Q Consensus 173 vS~~~~~~l~~~~gi-~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (414)
+|+.+++.+.+.+.. ++.+|||| |.+.|.+... .+.++++
T Consensus 146 ~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~---~~~~~~~----------------------------------- 187 (380)
T PRK15484 146 PSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQ---PNLRQQL----------------------------------- 187 (380)
T ss_pred cCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcch---HHHHHHh-----------------------------------
Confidence 999999988875433 38999999 7777766532 2334343
Q ss_pred cccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC---
Q 015058 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--- 327 (414)
Q Consensus 251 ~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--- 327 (414)
+++++. .+|+|+||+.+.||++.|++|++.+.+ .+|+++|+|+|+|+.
T Consensus 188 -~~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~---------------------------~~p~~~lvivG~g~~~~~ 238 (380)
T PRK15484 188 -NISPDE-TVLLYAGRISPDKGILLLMQAFEKLAT---------------------------AHSNLKLVVVGDPTASSK 238 (380)
T ss_pred -CCCCCC-eEEEEeccCccccCHHHHHHHHHHHHH---------------------------hCCCeEEEEEeCCccccc
Confidence 233344 489999999999999999999999876 378999999999874
Q ss_pred --hH----HHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 328 --KE----SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 328 --~e----~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++ ++++++++++ .+|.|+| +++.++++.+|++||++|+|+ ...+++|++++||||||+|||+++.+|.
T Consensus 239 ~~~~~~~~~l~~~~~~l~-~~v~~~G-~~~~~~l~~~~~~aDv~v~pS--~~~E~f~~~~lEAma~G~PVI~s~~gg~ 312 (380)
T PRK15484 239 GEKAAYQKKVLEAAKRIG-DRCIMLG-GQPPEKMHNYYPLADLVVVPS--QVEEAFCMVAVEAMAAGKPVLASTKGGI 312 (380)
T ss_pred cchhHHHHHHHHHHHhcC-CcEEEeC-CCCHHHHHHHHHhCCEEEeCC--CCccccccHHHHHHHcCCCEEEeCCCCc
Confidence 23 3444555554 2799997 899999999999999999763 2247899999999999999999998764
No 32
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=5.2e-27 Score=227.05 Aligned_cols=283 Identities=19% Similarity=0.211 Sum_probs=190.9
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~ 96 (414)
...++.+.++.|+++ ||+|++++.......... ...+.+...+ ... .......+. ....+.. .+
T Consensus 16 ~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~--~~~~~~~~~~---~~~--~~~~~~~~~-~~~~~~~-------~~ 79 (364)
T cd03814 16 VVRTLQRLVEHLRAR-GHEVLVIAPGPFRESEGP--ARVVPVPSVP---LPG--YPEIRLALP-PRRRVRR-------LL 79 (364)
T ss_pred eehHHHHHHHHHHHC-CCEEEEEeCCchhhccCC--CCceeecccc---cCc--ccceEeccc-chhhHHH-------HH
Confidence 345677778888886 999999998754322111 1222332222 100 000000000 0111111 11
Q ss_pred hhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 97 ~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
+..+||+||++++. ...+++..+++..++|++.++|+...... ............+.+++++++.+|.++++|+.
T Consensus 80 -~~~~pdii~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~ 154 (364)
T cd03814 80 -DAFAPDVVHIATPG--PLGLAALRAARRLGIPVVTSYHTDFPEYL--RYYGLGPLSWLAWAYLRWFHNRADRVLVPSPS 154 (364)
T ss_pred -HhcCCCEEEEeccc--hhhHHHHHHHHHcCCCEEEEEecChHHHh--hhcccchHhHhhHHHHHHHHHhCCEEEeCCHH
Confidence 34799999999763 22344556667789999999998632211 11122333444467788889999999999999
Q ss_pred HHHHHHHhhCCc-EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 177 MQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 177 ~~~~l~~~~gi~-i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
+++.+.+. +.+ +.+++|+ +.+.|.|.... ...+.++ + .
T Consensus 155 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~------------------------------------~-~ 194 (364)
T cd03814 155 LADELRAR-GFRRVRLWPRGVDTELFHPRRRD--EALRARL------------------------------------G-P 194 (364)
T ss_pred HHHHHhcc-CCCceeecCCCccccccCccccc--HHHHHHh------------------------------------C-C
Confidence 99866554 444 8889999 77777665321 1222221 1 1
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~ 334 (414)
++ +..++++|++.+.||++.+++|++.+.+ + ++++|+|+|+|++.+.++
T Consensus 195 ~~-~~~i~~~G~~~~~k~~~~~i~~~~~l~~---------------------------~-~~~~l~i~G~~~~~~~~~-- 243 (364)
T cd03814 195 PD-RPVLLYVGRLAPEKNLEALLDADLPLRR---------------------------R-PPVRLVIVGDGPARARLE-- 243 (364)
T ss_pred CC-CeEEEEEeccccccCHHHHHHHHHHhhh---------------------------c-CCceEEEEeCCchHHHHh--
Confidence 23 3589999999999999999999999875 3 689999999999877665
Q ss_pred HHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 335 IRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 335 i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+.. +|.|.| +++.+++..+|++||++++++. .+++|++++||||||+|||+++.++.
T Consensus 244 ----~~~~~v~~~g-~~~~~~~~~~~~~~d~~l~~s~---~e~~~~~~lEa~a~g~PvI~~~~~~~ 301 (364)
T cd03814 244 ----ARYPNVHFLG-FLDGEELAAAYASADVFVFPSR---TETFGLVVLEAMASGLPVVAPDAGGP 301 (364)
T ss_pred ----ccCCcEEEEe-ccCHHHHHHHHHhCCEEEECcc---cccCCcHHHHHHHcCCCEEEcCCCCc
Confidence 334 899997 8999999999999999997643 36789999999999999999998764
No 33
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.96 E-value=1e-26 Score=220.99 Aligned_cols=290 Identities=21% Similarity=0.238 Sum_probs=199.9
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~ 96 (414)
...++...+..|.+. ||+|++++............ ......... .. ........ ....... +.. +
T Consensus 16 ~~~~~~~l~~~L~~~-g~~v~i~~~~~~~~~~~~~~-~~~~~~~~~--~~-----~~~~~~~~-~~~~~~~----~~~-~ 80 (374)
T cd03801 16 AERHVLELARALAAR-GHEVTVLTPGDGGLPDEEEV-GGIVVVRPP--PL-----LRVRRLLL-LLLLALR----LRR-L 80 (374)
T ss_pred HhHHHHHHHHHHHhc-CceEEEEecCCCCCCceeee-cCcceecCC--cc-----cccchhHH-HHHHHHH----HHH-H
Confidence 345666777888875 99999999876442221111 111111000 00 00000000 0011111 111 1
Q ss_pred hhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 97 ~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
.+..+||+||++++. ......++++..++|+|+++|+..+... ..............++...+.+|.++++|+.
T Consensus 81 ~~~~~~Dii~~~~~~---~~~~~~~~~~~~~~~~i~~~h~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~ 154 (374)
T cd03801 81 LRRERFDVVHAHDWL---ALLAAALAARLLGIPLVLTVHGLEFGRP---GNELGLLLKLARALERRALRRADRIIAVSEA 154 (374)
T ss_pred hhhcCCcEEEEechh---HHHHHHHHHHhcCCcEEEEeccchhhcc---ccchhHHHHHHHHHHHHHHHhCCEEEEecHH
Confidence 234799999999973 3222225566789999999999754211 0011223455667788888999999999999
Q ss_pred HHHHHHHhhCC---cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccc
Q 015058 177 MQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVF 252 (414)
Q Consensus 177 ~~~~l~~~~gi---~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (414)
+++.+.+.++. ++.++||+ +...|.+.. .+.+... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~------------------------------------~ 194 (374)
T cd03801 155 TREELRELGGVPPEKITVIPNGVDTERFRPAP----RAARRRL------------------------------------G 194 (374)
T ss_pred HHHHHHhcCCCCCCcEEEecCcccccccCccc----hHHHhhc------------------------------------C
Confidence 99999988776 48999999 666564432 1111110 1
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
..++ .+.++++|++.+.||++.+++|+..+.++ .++++|+|+|+|+..+.++
T Consensus 195 ~~~~-~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~ 246 (374)
T cd03801 195 IPED-EPVILFVGRLVPRKGVDLLLEALAKLRKE---------------------------YPDVRLVIVGDGPLREELE 246 (374)
T ss_pred CcCC-CeEEEEecchhhhcCHHHHHHHHHHHhhh---------------------------cCCeEEEEEeCcHHHHHHH
Confidence 1223 35899999999999999999999998762 5789999999999999999
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+.+++++.. +|.|.| +++.+++..+|+.||++++++.. +++|++++|||++|+|||+++.++.
T Consensus 247 ~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~di~i~~~~~---~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 247 ALAAELGLGDRVTFLG-FVPDEDLPALYAAADVFVLPSLY---EGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred HHHHHhCCCcceEEEe-ccChhhHHHHHHhcCEEEecchh---ccccchHHHHHHcCCcEEEeCCCCh
Confidence 999999988 999997 99999999999999999987543 6789999999999999999987543
No 34
>PRK14098 glycogen synthase; Provisional
Probab=99.96 E-value=1.4e-26 Score=243.47 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=165.1
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh-------cCCeEEEEEcCcchhh----hhhc-cCCCcHHHHHH-----HHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL-------RRSAFIVDWHNFGYTL----LSLS-LGRRSHFVSIY-----RWIEKY 162 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~-------~~~~~Iv~~H~~~~~l----~~~~-~~~~~~~~~i~-----~~~Ek~ 162 (414)
.+|||||+|++ .+++++.+++.. .++|+|+|+|+..+.- .... +-.......+. ..+.|.
T Consensus 140 ~~pDiiH~hdw---~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~ 216 (489)
T PRK14098 140 WKPDIIHCHDW---YAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYT 216 (489)
T ss_pred CCCCEEEecCc---HHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHH
Confidence 58999999997 666666666543 3799999999974310 0000 00000000000 123455
Q ss_pred HhccCCEEEEeCHHHHHHHHHh----hCC---------cEEEecCC-CCCCcCCCChH----------------HHHHHH
Q 015058 163 YGKMANGCLCVTQAMQHELAQN----WGI---------KATVLYDQ-PPEFFHPTSLE----------------EKHELF 212 (414)
Q Consensus 163 ~~k~ad~ii~vS~~~~~~l~~~----~gi---------~i~vI~n~-~~~~f~p~~~~----------------~~~~l~ 212 (414)
..+.||.|+|+|+.+++++.+. +|. ++.+|+|| |.+.|.|.... .+..++
T Consensus 217 ~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~ 296 (489)
T PRK14098 217 GVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALL 296 (489)
T ss_pred HHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHH
Confidence 6689999999999999998752 232 48899999 88889875421 122333
Q ss_pred HHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC--CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhh
Q 015058 213 CRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK--PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAI 290 (414)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~ 290 (414)
+++ +++ ++.| +++++||++++||++.|++|+..+.+
T Consensus 297 ~~l------------------------------------gl~~~~~~~-~i~~vgRl~~~KG~d~li~a~~~l~~----- 334 (489)
T PRK14098 297 EEV------------------------------------GLPFDEETP-LVGVIINFDDFQGAELLAESLEKLVE----- 334 (489)
T ss_pred HHh------------------------------------CCCCccCCC-EEEEeccccccCcHHHHHHHHHHHHh-----
Confidence 332 333 3444 89999999999999999999998864
Q ss_pred hccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 291 LNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
++++|+|+|+|+. ++++++++++++ .+|.|.| .+++++++.+|++||++|+|
T Consensus 335 ------------------------~~~~lvivG~G~~~~~~~l~~l~~~~~-~~V~~~g-~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 335 ------------------------LDIQLVICGSGDKEYEKRFQDFAEEHP-EQVSVQT-EFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred ------------------------cCcEEEEEeCCCHHHHHHHHHHHHHCC-CCEEEEE-ecCHHHHHHHHHhCCEEEeC
Confidence 3699999999985 578899988874 4899997 78999999999999999987
Q ss_pred ccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 369 HTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 369 ~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+ ..|++|...+|||+||+|+|+++++|.
T Consensus 389 S---~~E~~Gl~~lEAma~G~ppVv~~~GGl 416 (489)
T PRK14098 389 G---KIESCGMLQMFAMSYGTIPVAYAGGGI 416 (489)
T ss_pred C---CCCCchHHHHHHHhCCCCeEEecCCCC
Confidence 4 357889999999999999999988764
No 35
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.96 E-value=2.5e-26 Score=219.76 Aligned_cols=219 Identities=20% Similarity=0.210 Sum_probs=172.1
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||++.+ .+...++.+..+..++|++++.|+..... . .. ....+..++...+.+|.++++|+.++
T Consensus 91 ~~~~dii~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----~--~~--~~~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 91 RFRPDLIHAHFA--YPDGFAAALLKRKLGIPLVVTLHGSDVNL----L--PR--KRLLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred cCCCCEEEEecc--chHHHHHHHHHHhcCCCEEEEeecchhcc----c--Cc--hhhHHHHHHHHHhcCCeEEeCCHHHH
Confidence 479999999965 24445566666777899999999875311 1 11 11345667788899999999999999
Q ss_pred HHHHHh--hCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 179 HELAQN--WGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 179 ~~l~~~--~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+.+. .+.++.+++|+ |...|.+..... . +++ ....
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~---~~~------------------------------------~~~~ 200 (377)
T cd03798 161 DELKALGIDPEKVTVIPNGVDTERFSPADRAE-A---RKL------------------------------------GLPE 200 (377)
T ss_pred HHHHHhcCCCCceEEcCCCcCcccCCCcchHH-H---Hhc------------------------------------cCCC
Confidence 999886 33458999999 666676654211 1 111 1122
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i 335 (414)
+ +..++++|++.+.||++.+++|++.+.+ .+++++|+|+|+|+..+.+++.+
T Consensus 201 ~-~~~i~~~g~~~~~k~~~~li~~~~~~~~---------------------------~~~~~~l~i~g~~~~~~~~~~~~ 252 (377)
T cd03798 201 D-KKVILFVGRLVPRKGIDYLIEALARLLK---------------------------KRPDVHLVIVGDGPLREALEALA 252 (377)
T ss_pred C-ceEEEEeccCccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEcCCcchHHHHHHH
Confidence 3 3589999999999999999999999875 35789999999999999999999
Q ss_pred HHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 336 RRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 336 ~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+++++. +|.+.| +++.+++..+|++||++++++.. +++|.+++|||++|+|||+++.++.
T Consensus 253 ~~~~~~~~v~~~g-~~~~~~~~~~~~~ad~~i~~~~~---~~~~~~~~Ea~~~G~pvI~~~~~~~ 313 (377)
T cd03798 253 AELGLEDRVTFLG-AVPHEEVPAYYAAADVFVLPSLR---EGFGLVLLEAMACGLPVVATDVGGI 313 (377)
T ss_pred HhcCCcceEEEeC-CCCHHHHHHHHHhcCeeecchhh---ccCChHHHHHHhcCCCEEEecCCCh
Confidence 999988 999997 99999999999999999976432 6789999999999999999987653
No 36
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.95 E-value=1.2e-26 Score=244.95 Aligned_cols=229 Identities=13% Similarity=0.119 Sum_probs=170.5
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEE-EcCcchhhhhhccCCCcHHHHHHHHHHH--HHhccCCEEEEeC
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEK--YYGKMANGCLCVT 174 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~-~H~~~~~l~~~~~~~~~~~~~i~~~~Ek--~~~k~ad~ii~vS 174 (414)
+..+||+||+|+. .+...+.+++++.|+|+|++ .|++.. ......+..-+.++.+ .+...+| ++++|
T Consensus 277 r~~rpDIVHt~~~---~a~l~g~laA~lagvpviv~~~h~~~~------~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s 346 (578)
T PRK15490 277 CERKLDYLSVWQD---GACLMIALAALIAGVPRIQLGLRGLPP------VVRKRLFKPEYEPLYQALAVVPGVD-FMSNN 346 (578)
T ss_pred HHcCCCEEEEcCc---ccHHHHHHHHHhcCCCEEEEeecccCC------cchhhHHHHHHHHhhhhceeEecch-hhhcc
Confidence 3489999999987 45556778888889999875 566321 0111111110111111 2244566 77899
Q ss_pred HHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccc
Q 015058 175 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID 250 (414)
Q Consensus 175 ~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (414)
...++.+++.++++ +.+|||| |++.|.|... .....++++.
T Consensus 347 ~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~-~~~~~r~~~~---------------------------------- 391 (578)
T PRK15490 347 HCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSE-VPHKIWQQFT---------------------------------- 391 (578)
T ss_pred HHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccch-hhHHHHHHhh----------------------------------
Confidence 99999998877776 8999999 8888887542 1122332221
Q ss_pred cccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHH
Q 015058 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 330 (414)
Q Consensus 251 ~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~ 330 (414)
.+++++. .+|+++||+.++||+..+++|+..+.++ .|+++|+|+|+|+++++
T Consensus 392 ~~l~~~~-~vIg~VgRl~~~Kg~~~LI~A~a~llk~---------------------------~pdirLvIVGdG~~~ee 443 (578)
T PRK15490 392 QKTQDAD-TTIGGVFRFVGDKNPFAWIDFAARYLQH---------------------------HPATRFVLVGDGDLRAE 443 (578)
T ss_pred hccCCCC-cEEEEEEEEehhcCHHHHHHHHHHHHhH---------------------------CCCeEEEEEeCchhHHH
Confidence 1233344 4889999999999999999999887652 57899999999999999
Q ss_pred HHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC--------ccc
Q 015058 331 YEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS--------VVG 401 (414)
Q Consensus 331 l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~--------~~~ 401 (414)
+++.++++|++ +|+|+| ..+|++.+|++||+||+++ ..|++|++++||||||+|||+++++| ++|
T Consensus 444 Lk~la~elgL~d~V~FlG---~~~Dv~~~LaaADVfVlPS---~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG 517 (578)
T PRK15490 444 AQKRAEQLGILERILFVG---ASRDVGYWLQKMNVFILFS---RYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSG 517 (578)
T ss_pred HHHHHHHcCCCCcEEECC---ChhhHHHHHHhCCEEEEcc---cccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcE
Confidence 99999999997 999998 5789999999999999763 35889999999999999999999864 567
Q ss_pred chhh
Q 015058 402 CLFV 405 (414)
Q Consensus 402 ~~~~ 405 (414)
.++-
T Consensus 518 ~LVp 521 (578)
T PRK15490 518 FILD 521 (578)
T ss_pred EEEC
Confidence 7653
No 37
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.95 E-value=4.2e-26 Score=235.02 Aligned_cols=298 Identities=14% Similarity=0.109 Sum_probs=193.6
Q ss_pred CChHHHHHH-HHHHhh-CCCcEEEEecCCCCCC----------cccccCCCeEEEEee-c-CCCCCCCCCCchHHHHHHH
Q 015058 17 RSPRMQYQA-LSLARQ-MSLEVDVVAYGGSKPH----------AAILEHPSIHIHTMT-Q-WPTIPRGLPKVLKPVLLLL 82 (414)
Q Consensus 17 ~~~r~~~~a-~~La~~-~g~eV~vv~~~~~~~~----------~~~~~~~~i~i~~v~-~-~~~~~~~~~~~~~~~~~l~ 82 (414)
++.|+...| ..|.+. .+++|+|+|......+ -++....++++.++. . ...+....++......
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--- 91 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQ--- 91 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHH---
Confidence 677777655 555553 3789999997754321 111223556655542 1 1111111222221111
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcc----hhhhhhccC-----------
Q 015058 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG----YTLLSLSLG----------- 147 (414)
Q Consensus 83 k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~----~~l~~~~~~----------- 147 (414)
.+.+.+ +.|..+.+ .+||||+.+.... .+++++ +.+.++|+|...| ++ ..+..+..+
T Consensus 92 -~~~~~~-~~~~~~~~-~~pDv~i~~~g~~-~~~~~~---~~~~~~~~i~y~h-~P~~~~d~l~~~~~~~~~~~~~~~~~ 163 (419)
T cd03806 92 -ALGSMI-LGLEALLK-LVPDIFIDTMGYP-FTYPLV---RLLGGCPVGAYVH-YPTISTDMLQKVRSREASYNNSATIA 163 (419)
T ss_pred -HHHHHH-HHHHHHHh-cCCCEEEEcCCcc-cHHHHH---HHhcCCeEEEEec-CCcchHHHHHHHhhccccccCccchh
Confidence 121111 11221112 5899988876311 122333 3334789999999 44 222222111
Q ss_pred CCc---HH----HHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCC--cEEEecCC-CCCCcCCCChHHHHHHHHHhhh
Q 015058 148 RRS---HF----VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQ-PPEFFHPTSLEEKHELFCRLNK 217 (414)
Q Consensus 148 ~~~---~~----~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi--~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~ 217 (414)
+++ .. ++++.++|++.++.||.++|+|+..++.+.+.++. ++.+|||+ +.+.|.+.+..
T Consensus 164 ~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~----------- 232 (419)
T cd03806 164 RSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLD----------- 232 (419)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccc-----------
Confidence 111 21 33445678999999999999999999999888766 58999998 55545433200
Q ss_pred hccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCc
Q 015058 218 ILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDST 297 (414)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~ 297 (414)
...+. ..|+|+||+.++||++.+|+|+..+.++.+
T Consensus 233 -----------------------------------~~~~~-~~il~vgr~~~~K~~~~li~A~~~l~~~~~--------- 267 (419)
T cd03806 233 -----------------------------------EKTRE-NQILSIAQFRPEKNHPLQLRAFAKLLKRLP--------- 267 (419)
T ss_pred -----------------------------------cccCC-cEEEEEEeecCCCCHHHHHHHHHHHHHhCc---------
Confidence 01122 489999999999999999999999876310
Q ss_pred hhhhhhhhhcCCccCCCCcEEEEEEcCCC------ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeecc
Q 015058 298 NEEVFLKEISDGKQYLYPRLLFIITGKGP------DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHT 370 (414)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~i~liI~G~G~------~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~ 370 (414)
+ ...++++|+|+|+|+ ..+++++++++++++ +|+|+| +++.++++.+|+.||++|.+
T Consensus 268 ----------~---~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g-~v~~~~l~~~l~~adv~v~~-- 331 (419)
T cd03806 268 ----------E---EIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVV-NAPFEELLEELSTASIGLHT-- 331 (419)
T ss_pred ----------c---cccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEec-CCCHHHHHHHHHhCeEEEEC--
Confidence 0 002469999999984 356788899999998 999997 89999999999999999964
Q ss_pred CCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 371 SSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 371 s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+..++||++++||||||+|+|+++++|
T Consensus 332 -s~~E~Fgi~~lEAMa~G~pvIa~~~gg 358 (419)
T cd03806 332 -MWNEHFGIGVVEYMAAGLIPLAHASGG 358 (419)
T ss_pred -CccCCcccHHHHHHHcCCcEEEEcCCC
Confidence 234789999999999999999998754
No 38
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.95 E-value=7.9e-26 Score=214.87 Aligned_cols=215 Identities=21% Similarity=0.209 Sum_probs=165.6
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||++++ ....+++.+..+. ++|++++.|+..... ...... .. .+++...+.+|.++|+|+.++
T Consensus 79 ~~~~dii~~~~~--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----~~~~~~-~~---~~~~~~~~~~d~ii~~s~~~~ 147 (353)
T cd03811 79 KEKPDVVISHLT--TTPNVLALLAARL-GTKLIVWEHNSLSLE----LKRKLR-LL---LLIRKLYRRADKIVAVSEGVK 147 (353)
T ss_pred hcCCCEEEEcCc--cchhHHHHHHhhc-CCceEEEEcCcchhh----hccchh-HH---HHHHhhccccceEEEeccchh
Confidence 369999999986 2233444454444 899999999985421 111111 11 567788899999999999999
Q ss_pred HHHHHhhCC---cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 179 HELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 179 ~~l~~~~gi---~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
+.+.+.++. ++.++||+ +.+.+.+.... .. ++ ...
T Consensus 148 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~---~~------------------------------------~~~ 186 (353)
T cd03811 148 EDLLKLLGIPPDKIEVIYNPIDIEEIRALAEE--PL---EL------------------------------------GIP 186 (353)
T ss_pred hhHHHhhcCCccccEEecCCcChhhcCcccch--hh---hc------------------------------------CCC
Confidence 999988773 38999999 65555443211 00 10 122
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~ 334 (414)
.+ +..++++|++.+.||++.+++|++.+.+ ..++++|+|+|+|+..+.+++.
T Consensus 187 ~~-~~~i~~~g~~~~~k~~~~~i~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~~~ 238 (353)
T cd03811 187 PD-GPVILAVGRLSPQKGFDTLIRAFALLRK---------------------------EGPDARLVILGDGPLREELEAL 238 (353)
T ss_pred CC-ceEEEEEecchhhcChHHHHHHHHHhhh---------------------------cCCCceEEEEcCCccHHHHHHH
Confidence 33 3589999999999999999999999875 2578999999999999999999
Q ss_pred HHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 335 IRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 335 i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++++. +|.|.| ..+++..+++.||++++++. .+++|++++|||++|+|||+++.+|.
T Consensus 239 ~~~~~~~~~v~~~g---~~~~~~~~~~~~d~~i~ps~---~e~~~~~~~Ea~~~G~PvI~~~~~~~ 298 (353)
T cd03811 239 AKELGLADRVHFLG---FQSNPYPYLKAADLFVLSSR---YEGFPNVLLEAMALGTPVVATDCPGP 298 (353)
T ss_pred HHhcCCCccEEEec---ccCCHHHHHHhCCEEEeCcc---cCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence 9999998 999998 46789999999999997643 36799999999999999999998864
No 39
>PLN02939 transferase, transferring glycosyl groups
Probab=99.95 E-value=8.4e-26 Score=248.94 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=162.9
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHh------hcCCeEEEEEcCcchhhh----hhc-cCCC-cHHHHHHHHHH-------
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLL----SLS-LGRR-SHFVSIYRWIE------- 160 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~------~~~~~~Iv~~H~~~~~l~----~~~-~~~~-~~~~~i~~~~E------- 160 (414)
.+|||||+|++ ++++++.++.. +.++|+|+|+||+.|.-. .+. .|-. ..+.+ ..+++
T Consensus 609 ~~PDIIH~HDW---~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~-~d~le~~~~~~i 684 (977)
T PLN02939 609 KKPDIIHCHDW---QTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDR-PDRMQDNAHGRI 684 (977)
T ss_pred CCCCEEEECCc---cHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccC-hhhhhhccCCch
Confidence 69999999998 55554322221 356899999999854210 000 0000 00000 01111
Q ss_pred ---HHHhccCCEEEEeCHHHHHHHHHhhCC-----------cEEEecCC-CCCCcCCCChH----------------HHH
Q 015058 161 ---KYYGKMANGCLCVTQAMQHELAQNWGI-----------KATVLYDQ-PPEFFHPTSLE----------------EKH 209 (414)
Q Consensus 161 ---k~~~k~ad~ii~vS~~~~~~l~~~~gi-----------~i~vI~n~-~~~~f~p~~~~----------------~~~ 209 (414)
|.-...||.|+|||+.+++++...+|. ++.+|+|| |.+.|.|.... .+.
T Consensus 685 N~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~ 764 (977)
T PLN02939 685 NVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKA 764 (977)
T ss_pred HHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhH
Confidence 222346999999999999998764331 27899999 88889886421 133
Q ss_pred HHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC---CCCeEEEEeccCCCCCChHHHHHHHHHhHHH
Q 015058 210 ELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP---NRPALVVSSTSWTPDEDFGILLEAALMYDRR 286 (414)
Q Consensus 210 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~ 286 (414)
++++++ |+++ +.| +|+++||++++||++.|++|+..+.+
T Consensus 765 aLRkel------------------------------------GL~~~d~d~p-LIg~VGRL~~QKGiDlLleA~~~Ll~- 806 (977)
T PLN02939 765 ALRKQL------------------------------------GLSSADASQP-LVGCITRLVPQKGVHLIRHAIYKTAE- 806 (977)
T ss_pred HHHHHh------------------------------------CCCcccccce-EEEEeecCCcccChHHHHHHHHHHhh-
Confidence 444443 3442 345 89999999999999999999987753
Q ss_pred HhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC---hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhc
Q 015058 287 VAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD---KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSA 362 (414)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~---~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~a 362 (414)
++++|+|+|+||+ +++++++++++++. +|+|+| +.+.+..+.+|++|
T Consensus 807 ----------------------------~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG-~~de~lah~IYAaA 857 (977)
T PLN02939 807 ----------------------------LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLIL-KYDEALSHSIYAAS 857 (977)
T ss_pred ----------------------------cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEe-ccCHHHHHHHHHhC
Confidence 3689999999986 36788899999987 899997 76777788999999
Q ss_pred cEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 363 DLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 363 Dl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
|+||+|+. .|++|..++|||+||+|+|+++++|.
T Consensus 858 DIFLmPSr---~EPfGLvqLEAMAyGtPPVVs~vGGL 891 (977)
T PLN02939 858 DMFIIPSM---FEPCGLTQMIAMRYGSVPIVRKTGGL 891 (977)
T ss_pred CEEEECCC---ccCCcHHHHHHHHCCCCEEEecCCCC
Confidence 99998743 57899999999999999999998884
No 40
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.95 E-value=4.8e-26 Score=237.50 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=184.9
Q ss_pred CCCCEEEEEEeCCCCCChHH----HHHHHHHHhhCC-CcEEEEecCCCCCC-------------cc-----cccCCCeEE
Q 015058 2 GRRGRACVVVLGDLGRSPRM----QYQALSLARQMS-LEVDVVAYGGSKPH-------------AA-----ILEHPSIHI 58 (414)
Q Consensus 2 ~~~~~~~v~~~~d~~~~~r~----~~~a~~La~~~g-~eV~vv~~~~~~~~-------------~~-----~~~~~~i~i 58 (414)
+..-++.|+.-+-++..+|+ ...+..|+++ | |+|+|+++...... +. +.+..+-++
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~-G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD-GDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc-CCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 33445666666666555555 5677899996 9 79999998643100 00 000113355
Q ss_pred EEeecCCCCCCCCCC-c---hHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHH--HHHHHhhcCCeEEE
Q 015058 59 HTMTQWPTIPRGLPK-V---LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVA--VKWASSLRRSAFIV 132 (414)
Q Consensus 59 ~~v~~~~~~~~~~~~-~---~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~--~~la~~~~~~~~Iv 132 (414)
.++++.+.+. ++. . ...+. ...-+.+ .+ +..+|||||+++|..+ +++ +...++..++ +|.
T Consensus 81 ~r~~s~~~p~--yp~r~~~~~r~~~-~~~~i~~-------~l-~~~~pDVIHv~tP~~L--G~~~~g~~~~~k~~~-vV~ 146 (462)
T PLN02846 81 SFLPKFSIKF--YPGKFSTDKRSIL-PVGDISE-------TI-PDEEADIAVLEEPEHL--TWYHHGKRWKTKFRL-VIG 146 (462)
T ss_pred EEeccccccc--CcccccccccccC-ChHHHHH-------HH-HhcCCCEEEEcCchhh--hhHHHHHHHHhcCCc-EEE
Confidence 5666433221 111 0 00000 0011111 11 2379999999998422 232 3333333344 676
Q ss_pred EEcCcchhhhhhccCCCcH-HHHHHHHHHHHHhcc-CCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHH
Q 015058 133 DWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKM-ANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKH 209 (414)
Q Consensus 133 ~~H~~~~~l~~~~~~~~~~-~~~i~~~~Ek~~~k~-ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~ 209 (414)
++|....... .+-.... ...+.+++.+|+.+. +|.+++.|+.+++ +.+. +.+..+| |+++|+|....
T Consensus 147 tyHT~y~~Y~--~~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~~----~i~~v~GVd~~~f~~~~~~--- 216 (462)
T PLN02846 147 IVHTNYLEYV--KREKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPRS----IICNVHGVNPKFLEIGKLK--- 216 (462)
T ss_pred EECCChHHHH--HHhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-HhhC----EEecCceechhhcCCCccc---
Confidence 8998421111 1101111 122333444555433 8999999998877 5432 3333467 88888876421
Q ss_pred HHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCC-CeEEEEeccCCCCCChHHHHHHHHHhHHHHh
Q 015058 210 ELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR-PALVVSSTSWTPDEDFGILLEAALMYDRRVA 288 (414)
Q Consensus 210 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~ 288 (414)
.++... ..+. ..+++|+||+.++||++.||+|++.+.+
T Consensus 217 -~~~~~~-------------------------------------~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~--- 255 (462)
T PLN02846 217 -LEQQKN-------------------------------------GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK--- 255 (462)
T ss_pred -HhhhcC-------------------------------------CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh---
Confidence 111100 1111 1268899999999999999999998875
Q ss_pred hhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 289 AILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
..|+++|+|+|+||+++++++++++++++...|.| .. +...+++++|+||.+
T Consensus 256 ------------------------~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G-~~---~~~~~~~~~DvFv~p 307 (462)
T PLN02846 256 ------------------------ELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPG-RD---HADPLFHDYKVFLNP 307 (462)
T ss_pred ------------------------hCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECC-CC---CHHHHHHhCCEEEEC
Confidence 25789999999999999999999999998323665 43 334799999999976
Q ss_pred ccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 369 HTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 369 ~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+ ..|++|++++||||||+|||+++.+|
T Consensus 308 S---~~Et~g~v~lEAmA~G~PVVa~~~~~ 334 (462)
T PLN02846 308 S---TTDVVCTTTAEALAMGKIVVCANHPS 334 (462)
T ss_pred C---CcccchHHHHHHHHcCCcEEEecCCC
Confidence 4 35789999999999999999999876
No 41
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=9.3e-27 Score=243.17 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=169.8
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccC--------CCcHHHHHHHHHHHHHhccCCEE
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG--------RRSHFVSIYRWIEKYYGKMANGC 170 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~--------~~~~~~~i~~~~Ek~~~k~ad~i 170 (414)
..++|++|+|+++ .+++++.++++..++|+|++.|+....-....+. .++.+.+++.++++..++.||.|
T Consensus 171 ~~~~dviH~~s~~--~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 171 LPKADVYHAVSTG--YAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCCEEeccCcc--hHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 3589999999762 3456677778888999999999963210000000 12234566778889999999999
Q ss_pred EEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeec
Q 015058 171 LCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (414)
Q Consensus 171 i~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (414)
+++|+..++.+.+ +|.+ +.+|||| +.+.|.|.... .
T Consensus 249 i~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~-------~-------------------------------- 288 (475)
T cd03813 249 TTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA-------R-------------------------------- 288 (475)
T ss_pred EecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc-------c--------------------------------
Confidence 9999999987655 4764 8899999 76777654310 0
Q ss_pred cccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCC
Q 015058 247 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 326 (414)
Q Consensus 247 ~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~ 326 (414)
..+++ ++|+++||+.+.||++.+++|++.++++ .|+++|+|+|+|+
T Consensus 289 ------~~~~~-~~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~IvG~g~ 334 (475)
T cd03813 289 ------PEKEP-PVVGLIGRVVPIKDIKTFIRAAAIVRKK---------------------------IPDAEGWVIGPTD 334 (475)
T ss_pred ------cCCCC-cEEEEEeccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEECCCC
Confidence 11233 4899999999999999999999998863 6899999999995
Q ss_pred C----hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 327 D----KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 327 ~----~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+ .+++++++++++++ +|+|+| .++++.+|++||++|+++ ..+++|++++||||||+|||+|+++|.
T Consensus 335 ~~~~~~~e~~~li~~l~l~~~V~f~G----~~~v~~~l~~aDv~vlpS---~~Eg~p~~vlEAma~G~PVVatd~g~~ 405 (475)
T cd03813 335 EDPEYAEECRELVESLGLEDNVKFTG----FQNVKEYLPKLDVLVLTS---ISEGQPLVILEAMAAGIPVVATDVGSC 405 (475)
T ss_pred cChHHHHHHHHHHHHhCCCCeEEEcC----CccHHHHHHhCCEEEeCc---hhhcCChHHHHHHHcCCCEEECCCCCh
Confidence 3 45678889999997 999997 788999999999999764 346899999999999999999998763
No 42
>PRK14099 glycogen synthase; Provisional
Probab=99.95 E-value=8.5e-26 Score=237.43 Aligned_cols=224 Identities=15% Similarity=0.098 Sum_probs=159.5
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh--cCCeEEEEEcCcchhhh-h---h-ccCCC-cHH--HHH--H--HHHHHHHhc
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLL-S---L-SLGRR-SHF--VSI--Y--RWIEKYYGK 165 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~--~~~~~Iv~~H~~~~~l~-~---~-~~~~~-~~~--~~i--~--~~~Ek~~~k 165 (414)
.+|||||+|++ ++++++.+++.. .++|+|+|+|+..+.-. . . .++.. ..+ ..+ + ..+.|+..+
T Consensus 132 ~~pDIiH~Hdw---~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~ 208 (485)
T PRK14099 132 FVPDIVHAHDW---QAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ 208 (485)
T ss_pred CCCCEEEECCc---HHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH
Confidence 69999999997 666666555432 36899999999754100 0 0 00000 000 000 0 013567778
Q ss_pred cCCEEEEeCHHHHHHHHHhh---C---------CcEEEecCC-CCCCcCCCChH----------------HHHHHHHHhh
Q 015058 166 MANGCLCVTQAMQHELAQNW---G---------IKATVLYDQ-PPEFFHPTSLE----------------EKHELFCRLN 216 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~l~~~~---g---------i~i~vI~n~-~~~~f~p~~~~----------------~~~~l~~~l~ 216 (414)
.||.|+|+|+.+++++.+.+ | .++.+|+|| |++.|.|.... .+.++++++
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~- 287 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARF- 287 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHc-
Confidence 99999999999999987532 1 238899999 88889886421 123344443
Q ss_pred hhccCCCCccccccCCCCCCCCccceeeeccccccccC--CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccC
Q 015058 217 KILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK--PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 294 (414)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~ 294 (414)
+++ ++.+ +++++||++++||++.|++|+..+.+
T Consensus 288 -----------------------------------gl~~~~~~~-li~~VgRL~~~KG~d~Li~A~~~l~~--------- 322 (485)
T PRK14099 288 -----------------------------------GLDPDPDAL-LLGVISRLSWQKGLDLLLEALPTLLG--------- 322 (485)
T ss_pred -----------------------------------CCCcccCCc-EEEEEecCCccccHHHHHHHHHHHHh---------
Confidence 343 2343 88899999999999999999998864
Q ss_pred CCchhhhhhhhhcCCccCCCCcEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHH-hhccEEEeeccC
Q 015058 295 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL-GSADLGVCLHTS 371 (414)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~--~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l-~~aDl~V~~~~s 371 (414)
.+++|+|+|+|+ .++.+++++++++...+.|+| .+++++.+| ++||+||+|+.
T Consensus 323 --------------------~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G---~~~~l~~~~~a~aDifv~PS~- 378 (485)
T PRK14099 323 --------------------EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIG---YDEALAHLIQAGADALLVPSR- 378 (485)
T ss_pred --------------------cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeC---CCHHHHHHHHhcCCEEEECCc-
Confidence 258999999997 367888888887633347888 588999987 57999998743
Q ss_pred CCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 372 SSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 372 ~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
.|++|..++|||+||+|+|+++++|
T Consensus 379 --~E~fGl~~lEAma~G~ppVvs~~GG 403 (485)
T PRK14099 379 --FEPCGLTQLCALRYGAVPVVARVGG 403 (485)
T ss_pred --cCCCcHHHHHHHHCCCCcEEeCCCC
Confidence 5789999999999998888888776
No 43
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.95 E-value=7.6e-26 Score=234.24 Aligned_cols=229 Identities=18% Similarity=0.093 Sum_probs=161.6
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhh------cCCeEEEEEcCcchhh----hhhc-cCCCc--HH------HHHHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSL------RRSAFIVDWHNFGYTL----LSLS-LGRRS--HF------VSIYRWI 159 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~------~~~~~Iv~~H~~~~~l----~~~~-~~~~~--~~------~~i~~~~ 159 (414)
..+|||||+|++ ++++++.+++.. .++|+|+|.|+..+.- .... .+... .+ ......+
T Consensus 127 ~~~pDviH~hd~---~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (476)
T cd03791 127 GWKPDIIHCHDW---HTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNF 203 (476)
T ss_pred CCCCcEEEECch---HHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccH
Confidence 379999999998 555555555443 4899999999974310 0000 00000 00 0001245
Q ss_pred HHHHhccCCEEEEeCHHHHHHHHHh------------hCCcEEEecCC-CCCCcCCCChH----------------HHHH
Q 015058 160 EKYYGKMANGCLCVTQAMQHELAQN------------WGIKATVLYDQ-PPEFFHPTSLE----------------EKHE 210 (414)
Q Consensus 160 Ek~~~k~ad~ii~vS~~~~~~l~~~------------~gi~i~vI~n~-~~~~f~p~~~~----------------~~~~ 210 (414)
++...+.||.++++|+.+++++.+. ...++.+|+|| |.+.|.|.... .+..
T Consensus 204 ~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~ 283 (476)
T cd03791 204 LKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAA 283 (476)
T ss_pred HHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHH
Confidence 7777899999999999999887631 12348999999 78888775321 1233
Q ss_pred HHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhh
Q 015058 211 LFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAI 290 (414)
Q Consensus 211 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~ 290 (414)
++++++.+ ..++.+ +|+++||++++||++.|++|++.+.++
T Consensus 284 l~~~~g~~----------------------------------~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~---- 324 (476)
T cd03791 284 LQEELGLP----------------------------------VDPDAP-LFGFVGRLTEQKGIDLLLEALPELLEL---- 324 (476)
T ss_pred HHHHcCCC----------------------------------cCCCCC-EEEEEeeccccccHHHHHHHHHHHHHc----
Confidence 44443210 124555 899999999999999999999988751
Q ss_pred hccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC--hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 291 LNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
+++|+|+|+|+. ++.++++++++ ..+|.|.+++ +.++++.+|++||++++|
T Consensus 325 -------------------------~~~lvi~G~g~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~~~~~~~~aDv~l~p 377 (476)
T cd03791 325 -------------------------GGQLVILGSGDPEYEEALRELAARY-PGRVAVLIGY-DEALAHLIYAGADFFLMP 377 (476)
T ss_pred -------------------------CcEEEEEecCCHHHHHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHhCCEEECC
Confidence 389999999964 35667776665 4488887644 678889999999999976
Q ss_pred ccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 369 HTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 369 ~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+ ..|++|..++|||+||+|+|+++++|.
T Consensus 378 S---~~E~~gl~~lEAma~G~pvI~~~~gg~ 405 (476)
T cd03791 378 S---RFEPCGLTQMYAMRYGTVPIVRATGGL 405 (476)
T ss_pred C---CCCCCcHHHHHHhhCCCCCEECcCCCc
Confidence 3 357789999999999999999998874
No 44
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.95 E-value=1.3e-25 Score=213.40 Aligned_cols=263 Identities=18% Similarity=0.174 Sum_probs=179.6
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 015058 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (414)
Q Consensus 23 ~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~ 102 (414)
..+..|+++ ||+|++++..... .......+++.+..++ ........... ..... +..++ +..+|
T Consensus 21 ~l~~~L~~~-g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~----~~~~l-~~~~~ 84 (348)
T cd03820 21 NLANALAEK-GHEVTIISLDKGE-PPFYELDPKIKVIDLG--DKRDSKLLARF-------KKLRR----LRKLL-KNNKP 84 (348)
T ss_pred HHHHHHHhC-CCeEEEEecCCCC-CCccccCCccceeecc--cccccchhccc-------cchHH----HHHhh-cccCC
Confidence 455667665 9999999987653 1112234567776665 21110000001 11111 11111 33799
Q ss_pred cEEEEeCCCCchHHHHHHHHHhhcC-CeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHH
Q 015058 103 DVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (414)
Q Consensus 103 Dvvh~~~pp~~~~~~~~~la~~~~~-~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l 181 (414)
|+||++.++ ....++....+ +|++++.|+..... .... .....++.+++.+|.++|+|+.++...
T Consensus 85 d~i~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~d~ii~~s~~~~~~~ 150 (348)
T cd03820 85 DVVISFLTS-----LLTFLASLGLKIVKLIVSEHNSPDAY-------KKRL--RRLLLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred CEEEEcCch-----HHHHHHHHhhccccEEEecCCCccch-------hhhh--HHHHHHHHHHhcCCEEEEeCHHHHHHh
Confidence 999999873 11222223334 48899989864311 1111 111257888899999999999997333
Q ss_pred HHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeE
Q 015058 182 AQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPAL 260 (414)
Q Consensus 182 ~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (414)
....+.++.++||+ +...+.+. ...++ ..
T Consensus 151 ~~~~~~~~~vi~~~~~~~~~~~~-------------------------------------------------~~~~~-~~ 180 (348)
T cd03820 151 YKKFNKNVVVIPNPLPFPPEEPS-------------------------------------------------SDLKS-KR 180 (348)
T ss_pred hccCCCCeEEecCCcChhhcccc-------------------------------------------------CCCCC-cE
Confidence 22223448999999 43322111 01123 48
Q ss_pred EEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCC
Q 015058 261 VVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL 340 (414)
Q Consensus 261 i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l 340 (414)
++++|++.+.||++.+++|++.+.+ ..|+++|+|+|+|++++.+++.++++++
T Consensus 181 i~~~g~~~~~K~~~~l~~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~~~~~~~~~ 233 (348)
T cd03820 181 ILAVGRLVPQKGFDLLIEAWAKIAK---------------------------KHPDWKLRIVGDGPEREALEALIKELGL 233 (348)
T ss_pred EEEEEeeccccCHHHHHHHHHHHHh---------------------------cCCCeEEEEEeCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999875 3678999999999999999999999999
Q ss_pred C-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 341 K-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 341 ~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
. +|.|.| ..+++..+|++||++++++. .+++|.+++|||+||+|||+++.++
T Consensus 234 ~~~v~~~g---~~~~~~~~~~~ad~~i~ps~---~e~~~~~~~Ea~a~G~Pvi~~~~~~ 286 (348)
T cd03820 234 EDRVILLG---FTKNIEEYYAKASIFVLTSR---FEGFPMVLLEAMAFGLPVISFDCPT 286 (348)
T ss_pred CCeEEEcC---CcchHHHHHHhCCEEEeCcc---ccccCHHHHHHHHcCCCEEEecCCC
Confidence 8 999998 48999999999999997643 3689999999999999999998754
No 45
>PLN02316 synthase/transferase
Probab=99.95 E-value=1.6e-25 Score=249.87 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=159.0
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHh------hcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEe
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~------~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~v 173 (414)
.+|||||+|++ ++++++.+++. +.++|+|+|+|+..+ . .+. + +.....||.|+||
T Consensus 708 ~~PDIIHaHDW---~talva~llk~~~~~~~~~~~p~V~TiHnl~~-------~-~n~-------l-k~~l~~AD~ViTV 768 (1036)
T PLN02316 708 FHPDIIHCHDW---SSAPVAWLFKDHYAHYGLSKARVVFTIHNLEF-------G-ANH-------I-GKAMAYADKATTV 768 (1036)
T ss_pred CCCCEEEECCC---hHHHHHHHHHHhhhhhccCCCCEEEEeCCccc-------c-hhH-------H-HHHHHHCCEEEeC
Confidence 58999999998 55555555544 246899999999753 1 111 1 2344789999999
Q ss_pred CHHHHHHHHHhhCC-----cEEEecCC-CCCCcCCCCh-----------------HHHHHHHHHhhhhccCCCCcccccc
Q 015058 174 TQAMQHELAQNWGI-----KATVLYDQ-PPEFFHPTSL-----------------EEKHELFCRLNKILHQPLGVQDCVS 230 (414)
Q Consensus 174 S~~~~~~l~~~~gi-----~i~vI~n~-~~~~f~p~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~ 230 (414)
|+.+++++.....+ ++.+|+|| |++.|.|... ..+..+++++
T Consensus 769 S~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~l--------------- 833 (1036)
T PLN02316 769 SPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRL--------------- 833 (1036)
T ss_pred CHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHh---------------
Confidence 99999998765332 38899999 8888877421 0122344443
Q ss_pred CCCCCCCCccceeeeccccccccCC-CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCC
Q 015058 231 NGMEGQKADETIFTSLAGIDVFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDG 309 (414)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (414)
+++. +.| +|+++|||+++||++.|++|+..+.+
T Consensus 834 ---------------------GL~~~d~p-lVg~VGRL~~qKGvdlLi~Al~~ll~------------------------ 867 (1036)
T PLN02316 834 ---------------------GLKQADLP-LVGIITRLTHQKGIHLIKHAIWRTLE------------------------ 867 (1036)
T ss_pred ---------------------CCCcccCe-EEEEEeccccccCHHHHHHHHHHHhh------------------------
Confidence 3442 455 89999999999999999999998764
Q ss_pred ccCCCCcEEEEEEcCCCC---hHHHHHHHHHcCC--C-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH
Q 015058 310 KQYLYPRLLFIITGKGPD---KESYEEKIRRLRL--K-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY 383 (414)
Q Consensus 310 ~~~~~p~i~liI~G~G~~---~e~l~~~i~~l~l--~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E 383 (414)
++++|+|+|+||+ ++.++++++++++ . +|.|.| ..+......+|++||+||+|+ ..|++|...+|
T Consensus 868 -----~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g-~~de~lah~iyaaADiflmPS---~~EP~GLvqLE 938 (1036)
T PLN02316 868 -----RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCL-TYDEPLSHLIYAGADFILVPS---IFEPCGLTQLT 938 (1036)
T ss_pred -----cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEe-cCCHHHHHHHHHhCcEEEeCC---cccCccHHHHH
Confidence 3689999999986 4678889999876 3 799987 333333358999999999874 35789999999
Q ss_pred HHHcCCeEEEeeeCCc
Q 015058 384 CWYSRYSLKLLWTCSV 399 (414)
Q Consensus 384 ama~G~Pvi~s~~~~~ 399 (414)
||+||+|+|+++++|.
T Consensus 939 AMa~GtppVvs~vGGL 954 (1036)
T PLN02316 939 AMRYGSIPVVRKTGGL 954 (1036)
T ss_pred HHHcCCCeEEEcCCCc
Confidence 9999999999998874
No 46
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.95 E-value=2.9e-26 Score=229.68 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=148.5
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeE--EEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAF--IVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~--Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
..+||+||+|++ ....++.++++..+.|+ +...|.... .... . ...+ .+.+|.++++|+.
T Consensus 82 ~~~~Dii~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~~--------~~~~-~----~~~~--~~~~d~~i~~S~~ 143 (359)
T PRK09922 82 ETQPDIVICIDV---ISCLYANKARKKSGKQFKIFSWPHFSLD--------HKKH-A----ECKK--ITCADYHLAISSG 143 (359)
T ss_pred hcCCCEEEEcCH---HHHHHHHHHHHHhCCCCeEEEEecCccc--------ccch-h----hhhh--hhcCCEEEEcCHH
Confidence 479999999986 34455666666666554 444564311 1111 1 1111 2789999999999
Q ss_pred HHHHHHHhhCCc---EEEecCC-CCCCcC-CCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 177 MQHELAQNWGIK---ATVLYDQ-PPEFFH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 177 ~~~~l~~~~gi~---i~vI~n~-~~~~f~-p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
+++.+.+. |++ +.+|||+ +.+.|. |.+ .
T Consensus 144 ~~~~~~~~-~~~~~ki~vi~N~id~~~~~~~~~-~--------------------------------------------- 176 (359)
T PRK09922 144 IKEQMMAR-GISAQRISVIYNPVEIKTIIIPPP-E--------------------------------------------- 176 (359)
T ss_pred HHHHHHHc-CCCHHHEEEEcCCCCHHHccCCCc-c---------------------------------------------
Confidence 99999864 764 8999999 533221 211 0
Q ss_pred ccCCCCCeEEEEeccCC--CCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChH
Q 015058 252 FLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 329 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~--~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e 329 (414)
..++ ..++++||+. +.||++.+++|+..+. ++++|+|+|+|++++
T Consensus 177 --~~~~-~~i~~~Grl~~~~~k~~~~l~~a~~~~~------------------------------~~~~l~ivG~g~~~~ 223 (359)
T PRK09922 177 --RDKP-AVFLYVGRLKFEGQKNVKELFDGLSQTT------------------------------GEWQLHIIGDGSDFE 223 (359)
T ss_pred --cCCC-cEEEEEEEEecccCcCHHHHHHHHHhhC------------------------------CCeEEEEEeCCccHH
Confidence 0122 4889999997 4599999999998763 269999999999999
Q ss_pred HHHHHHHHcCCC-cEEEecCCCC--hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee-eCCc
Q 015058 330 SYEEKIRRLRLK-RVAFRTMWLS--AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW-TCSV 399 (414)
Q Consensus 330 ~l~~~i~~l~l~-~V~f~g~~v~--~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~-~~~~ 399 (414)
++++.++++++. +|+|.| +++ .++++.+|++||++|+++ ..|++|++++||||||+|||+++ ++|.
T Consensus 224 ~l~~~~~~~~l~~~v~f~G-~~~~~~~~~~~~~~~~d~~v~~s---~~Egf~~~~lEAma~G~Pvv~s~~~~g~ 293 (359)
T PRK09922 224 KCKAYSRELGIEQRIIWHG-WQSQPWEVVQQKIKNVSALLLTS---KFEGFPMTLLEAMSYGIPCISSDCMSGP 293 (359)
T ss_pred HHHHHHHHcCCCCeEEEec-ccCCcHHHHHHHHhcCcEEEECC---cccCcChHHHHHHHcCCCEEEeCCCCCh
Confidence 999999999998 999997 764 488999999999999763 35789999999999999999999 5543
No 47
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.95 E-value=2.9e-25 Score=213.73 Aligned_cols=226 Identities=16% Similarity=0.163 Sum_probs=164.5
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHH-HH-HHHHHHHHhccCCEEEEeCHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFV-SI-YRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~-~i-~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
..+||+||+|++....... +....+..++|++++.|+...... . ..+.+. .+ ..+.++...+.+|.++++|+.
T Consensus 85 ~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 85 IREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWA---L-PHKALKKRLAWFLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred CCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEccccccccc---c-ccchhhhHHHHHHHHHHHHhcCCEEEECCHH
Confidence 4789999999864333333 333344578999999998643211 0 111221 12 234567788899999999988
Q ss_pred HHHHHHHhh-CCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 177 MQHELAQNW-GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 177 ~~~~l~~~~-gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
..+.+.... ..++.++||+ +.+.|.+.... .. ++++ +.+
T Consensus 160 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~~~------------------------------------~~~ 200 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPNGVDIPPFAALPSR--GR-RRKF------------------------------------PIL 200 (375)
T ss_pred HHHHHHhhCCcccEEEcCCCcChhccCcchhh--hh-hhhc------------------------------------cCC
Confidence 777665532 2338999999 66667654321 11 2221 223
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC--hHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 332 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--~e~l~ 332 (414)
+++ ..++++||+.+.||++.+++|+..+.+ +.++++|+|+|+|+. .+.++
T Consensus 201 ~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~~~~ 252 (375)
T cd03821 201 PDK-RIILFLGRLHPKKGLDLLIEAFAKLAE---------------------------RFPDWHLVIAGPDEGGYRAELK 252 (375)
T ss_pred CCC-cEEEEEeCcchhcCHHHHHHHHHHhhh---------------------------hcCCeEEEEECCCCcchHHHHH
Confidence 344 489999999999999999999999886 367899999998754 45566
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCcc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~~ 400 (414)
..++++++. +|.|+| +++.+++..+|++||++|+++. .+++|++++|||+||+|||+++.+|..
T Consensus 253 ~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~adv~v~ps~---~e~~~~~~~Eama~G~PvI~~~~~~~~ 317 (375)
T cd03821 253 QIAAALGLEDRVTFTG-MLYGEDKAAALADADLFVLPSH---SENFGIVVAEALACGTPVVTTDKVPWQ 317 (375)
T ss_pred HHHHhcCccceEEEcC-CCChHHHHHHHhhCCEEEeccc---cCCCCcHHHHHHhcCCCEEEcCCCCHH
Confidence 666888987 999997 9999999999999999997643 378999999999999999999987754
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.95 E-value=8.3e-26 Score=226.61 Aligned_cols=214 Identities=13% Similarity=0.115 Sum_probs=150.0
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||+|++. + ..+ ..+.+..++|+|+++|..... .. ..+.+++ +.+.+.+|.+++.|+..
T Consensus 83 ~~~~Dvv~~h~~~--~-~~~-~~~~~~~~~~~i~~~H~~~~~--------~~--~~~~~~~-~~~~~~~d~~i~~~~~~- 146 (372)
T cd03792 83 DLDADVVVIHDPQ--P-LAL-PLFKKKRGRPWIWRCHIDLSS--------PN--RRVWDFL-QPYIEDYDAAVFHLPEY- 146 (372)
T ss_pred cCCCCEEEECCCC--c-hhH-HHhhhcCCCeEEEEeeeecCC--------Cc--HHHHHHH-HHHHHhCCEEeecHHHh-
Confidence 4689999999873 2 222 222333489999999975321 11 1222333 44557899999988432
Q ss_pred HHHHHhhCCcEEEecCC-CCCC-c-CCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 179 HELAQNWGIKATVLYDQ-PPEF-F-HPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 179 ~~l~~~~gi~i~vI~n~-~~~~-f-~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+....+..++||+ |+.. + .+.+.+++..+++++ ++++
T Consensus 147 --~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~ 188 (372)
T cd03792 147 --VPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKY------------------------------------GIDP 188 (372)
T ss_pred --cCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHh------------------------------------CCCC
Confidence 222222234499999 6542 2 122323344455443 3445
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh-----HH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----ES 330 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~-----e~ 330 (414)
+++ +|+++||+.++||++.|++|++.+.+ ..|+++|+|+|+|+.+ +.
T Consensus 189 ~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~---------------------------~~~~~~l~i~G~g~~~~~~~~~~ 240 (372)
T cd03792 189 ERP-YITQVSRFDPWKDPFGVIDAYRKVKE---------------------------RVPDPQLVLVGSGATDDPEGWIV 240 (372)
T ss_pred CCc-EEEEEeccccccCcHHHHHHHHHHHh---------------------------hCCCCEEEEEeCCCCCCchhHHH
Confidence 664 89999999999999999999999875 2578999999999753 23
Q ss_pred HHHHHHHcCCC-cEEEecCCC--ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 331 YEEKIRRLRLK-RVAFRTMWL--SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 331 l~~~i~~l~l~-~V~f~g~~v--~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++++.+++++. +|.|.| +. ++++++.+|++||++|.++ ..+++|++++||||||+|||+|+.+|
T Consensus 241 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~ad~~v~~s---~~Eg~g~~~lEA~a~G~Pvv~s~~~~ 307 (372)
T cd03792 241 YEEVLEYAEGDPDIHVLT-LPPVSDLEVNALQRASTVVLQKS---IREGFGLTVTEALWKGKPVIAGPVGG 307 (372)
T ss_pred HHHHHHHhCCCCCeEEEe-cCCCCHHHHHHHHHhCeEEEeCC---CccCCCHHHHHHHHcCCCEEEcCCCC
Confidence 55556567777 899997 54 8899999999999999753 35789999999999999999999876
No 49
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.95 E-value=4.8e-25 Score=213.97 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=154.3
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHH---HhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeC-
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWA---SSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT- 174 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la---~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS- 174 (414)
..+||+||++.............+ .+..++|+|++.|+.... ... ....++++.+.+.+|.++|+|
T Consensus 74 ~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------~~~---~~~~~~~~~~~~~~d~ii~~s~ 143 (366)
T cd03822 74 LSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLH-------EPR---PGDRALLRLLLRRADAVIVMSS 143 (366)
T ss_pred hcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcc-------ccc---hhhhHHHHHHHhcCCEEEEeeH
Confidence 379999999873211111111122 233789999999997210 111 123455677779999999996
Q ss_pred HHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc
Q 015058 175 QAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (414)
Q Consensus 175 ~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (414)
+..++.+...+..++.+++|+ +...+.+.. .. . +. ..
T Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~---~-~~------------------------------------~~ 181 (366)
T cd03822 144 ELLRALLLRAYPEKIAVIPHGVPDPPAEPPE--SL---K-AL------------------------------------GG 181 (366)
T ss_pred HHHHHHHhhcCCCcEEEeCCCCcCcccCCch--hh---H-hh------------------------------------cC
Confidence 455544433222458999999 544443321 11 1 11 11
Q ss_pred CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 254 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 254 ~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
.+++ ..++++|+++++||++.+++|++.+.++ .++++|+|+|+|+.......
T Consensus 182 ~~~~-~~i~~~G~~~~~K~~~~ll~a~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~ 233 (366)
T cd03822 182 LDGR-PVLLTFGLLRPYKGLELLLEALPLLVAK---------------------------HPDVRLLVAGETHPDLERYR 233 (366)
T ss_pred CCCC-eEEEEEeeccCCCCHHHHHHHHHHHHhh---------------------------CCCeEEEEeccCccchhhhh
Confidence 2233 4899999999999999999999998763 57899999999876443332
Q ss_pred -----HHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 334 -----KIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 334 -----~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+++++++. +|.|.|++++.+++..+|+.||++++|+... ..++|++++|||+||+|||++++++
T Consensus 234 ~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e-~~~~~~~~~Ea~a~G~PvI~~~~~~ 303 (366)
T cd03822 234 GEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSA-DQTQSGVLAYAIGFGKPVISTPVGH 303 (366)
T ss_pred hhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccccc-ccccchHHHHHHHcCCCEEecCCCC
Confidence 38899998 9999986799999999999999999774321 1389999999999999999999876
No 50
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.94 E-value=3.4e-25 Score=214.94 Aligned_cols=218 Identities=19% Similarity=0.163 Sum_probs=164.7
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.+||+||+++++.... +..++|+|+++|+..+.... ..........++++++.+.+.+|.++++|+.+++
T Consensus 84 ~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 84 LGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFP--EYFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred cCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCc--ccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 7999999998732211 55789999999987432110 0112223456677888889999999999999999
Q ss_pred HHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 180 ELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 180 ~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
.+.+.++.+ +.++||+ +...+.+.... . +.+.. ..+
T Consensus 154 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~--~~~~~------------------------------------~~~ 193 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPLGVDPRFRPPPAEA--E--VLRAL------------------------------------YLL 193 (365)
T ss_pred HHHHHhCcCHHHEEeeccccCccccCCCchH--H--HHHHh------------------------------------cCC
Confidence 999887743 8999999 66666554321 1 21211 122
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC-hHHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEK 334 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~-~e~l~~~ 334 (414)
++ ..++++|++.+.||++.+++|+..+.++ .++++|+|+|.|+. .+...+.
T Consensus 194 ~~-~~i~~~G~~~~~K~~~~~l~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~~~ 245 (365)
T cd03809 194 PR-PYFLYVGTIEPRKNLERLLEAFARLPAK---------------------------GPDPKLVIVGKRGWLNEELLAR 245 (365)
T ss_pred CC-CeEEEeCCCccccCHHHHHHHHHHHHHh---------------------------cCCCCEEEecCCccccHHHHHH
Confidence 33 4899999999999999999999999863 45789999998754 3444445
Q ss_pred HHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 335 IRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 335 i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++++. +|.|+| +++.+++..+|++||+++.|+. .+++|.+++|||++|+|||++++++.
T Consensus 246 ~~~~~~~~~v~~~g-~~~~~~~~~~~~~~d~~l~ps~---~e~~~~~~~Ea~a~G~pvI~~~~~~~ 307 (365)
T cd03809 246 LRELGLGDRVRFLG-YVSDEELAALYRGARAFVFPSL---YEGFGLPVLEAMACGTPVIASNISSL 307 (365)
T ss_pred HHHcCCCCeEEECC-CCChhHHHHHHhhhhhhcccch---hccCCCCHHHHhcCCCcEEecCCCCc
Confidence 5678887 999997 9999999999999999997643 46789999999999999999998653
No 51
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.94 E-value=2.8e-25 Score=215.66 Aligned_cols=194 Identities=8% Similarity=0.011 Sum_probs=149.0
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
+..+||+||+|.+. .... +++..+.|+|+++|+.... .... . .......+.++++|+..
T Consensus 84 ~~~~~Divh~~~~~---~~~~---~~~~~~~~~v~~~h~~~~~-------~~~~---~-----~~~~~~~~~~~~~s~~~ 142 (335)
T cd03802 84 AAGDFDIVHNHSLH---LPLP---FARPLPVPVVTTLHGPPDP-------ELLK---L-----YYAARPDVPFVSISDAQ 142 (335)
T ss_pred hcCCCCEEEecCcc---cchh---hhcccCCCEEEEecCCCCc-------ccch---H-----HHhhCcCCeEEEecHHH
Confidence 34789999999873 2222 4566789999999997531 1111 1 12236778999999999
Q ss_pred HHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCC
Q 015058 178 QHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (414)
Q Consensus 178 ~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (414)
++.+... .++.+|||+ |.+.|++.. .+
T Consensus 143 ~~~~~~~--~~~~vi~ngvd~~~~~~~~--------------------------------------------------~~ 170 (335)
T cd03802 143 RRPWPPL--PWVATVHNGIDLDDYPFRG--------------------------------------------------PK 170 (335)
T ss_pred Hhhcccc--cccEEecCCcChhhCCCCC--------------------------------------------------CC
Confidence 8866543 458899999 766665421 12
Q ss_pred CCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHH
Q 015058 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (414)
Q Consensus 257 ~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~ 336 (414)
+ ..++++||+.++||++.+++|++. ++++|+|+|+|+..+.++..++
T Consensus 171 ~-~~i~~~Gr~~~~Kg~~~li~~~~~--------------------------------~~~~l~i~G~~~~~~~~~~~~~ 217 (335)
T cd03802 171 G-DYLLFLGRISPEKGPHLAIRAARR--------------------------------AGIPLKLAGPVSDPDYFYREIA 217 (335)
T ss_pred C-CEEEEEEeeccccCHHHHHHHHHh--------------------------------cCCeEEEEeCCCCHHHHHHHHH
Confidence 2 278999999999999999998653 3589999999998888888777
Q ss_pred HcC-CC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCcc
Q 015058 337 RLR-LK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 337 ~l~-l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~~ 400 (414)
+.. +. +|+|.| +++.++++.+|++||++|+++. ..+++|.+++||||||+|||+++++|..
T Consensus 218 ~~~~~~~~v~~~G-~~~~~~~~~~~~~~d~~v~ps~--~~E~~~~~~lEAma~G~PvI~~~~~~~~ 280 (335)
T cd03802 218 PELLDGPDIEYLG-EVGGAEKAELLGNARALLFPIL--WEEPFGLVMIEAMACGTPVIAFRRGAVP 280 (335)
T ss_pred HhcccCCcEEEeC-CCCHHHHHHHHHhCcEEEeCCc--ccCCcchHHHHHHhcCCCEEEeCCCCch
Confidence 765 44 999997 9999999999999999997632 3478899999999999999999987643
No 52
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.94 E-value=2.1e-24 Score=236.02 Aligned_cols=317 Identities=13% Similarity=0.055 Sum_probs=195.7
Q ss_pred HHhhCCC----cEEEEecCCCCCC--------cccccCCCeEEEEeecCCCCCCC--CCCchHHHHHHHHHHHHHHHHHH
Q 015058 28 LARQMSL----EVDVVAYGGSKPH--------AAILEHPSIHIHTMTQWPTIPRG--LPKVLKPVLLLLKPLIQFFMLLW 93 (414)
Q Consensus 28 La~~~g~----eV~vv~~~~~~~~--------~~~~~~~~i~i~~v~~~~~~~~~--~~~~~~~~~~l~k~l~~~~~l~~ 93 (414)
|+++ || +|+|+|....... ..+...++++|.++| ..+... .++.. .-..++.++..|..-+.
T Consensus 300 La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp--~g~~~~~~~~~~i-~k~~l~p~l~~f~~~~~ 375 (784)
T TIGR02470 300 IKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVP--FRTENGIILRNWI-SRFEIWPYLETFAEDAE 375 (784)
T ss_pred HHhc-CCCccceEEEEecCCCCccccccccccccccCCCceEEEEec--CCCCccccccccc-CHHHHHHHHHHHHHHHH
Confidence 4565 99 7779998743211 122234789999998 333211 11111 11223334444333222
Q ss_pred H-Hhhh-cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccC--CCcH--HHHHHHHH--HHHHhc
Q 015058 94 F-LCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG--RRSH--FVSIYRWI--EKYYGK 165 (414)
Q Consensus 94 ~-l~~k-~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~--~~~~--~~~i~~~~--Ek~~~k 165 (414)
. +... ..+||+||+|.+ .++.+|.++++..|+|++.+.|.+..+-. ...+ .... ..++...+ |....+
T Consensus 376 ~~~~~~~~~~pDlIHahy~---d~glva~lla~~lgVP~v~t~HsL~~~K~-~~~g~~~~~~e~~~~~~~r~~ae~~~~~ 451 (784)
T TIGR02470 376 KEILAELQGKPDLIIGNYS---DGNLVASLLARKLGVTQCTIAHALEKTKY-PDSDIYWQEFEDKYHFSCQFTADLIAMN 451 (784)
T ss_pred HHHHHhcCCCCCEEEECCC---chHHHHHHHHHhcCCCEEEECCcchhhcc-cccccccccchhHHHhhhhhhHHHHHHh
Confidence 1 1111 257999999998 67778888899999999999998743211 0001 0100 11222112 567778
Q ss_pred cCCEEEEeCHHHHHH----HHHh-----------h----CC-----cEEEecCC-CCCCcCCCChHHHH--HHHHHhhhh
Q 015058 166 MANGCLCVTQAMQHE----LAQN-----------W----GI-----KATVLYDQ-PPEFFHPTSLEEKH--ELFCRLNKI 218 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~----l~~~-----------~----gi-----~i~vI~n~-~~~~f~p~~~~~~~--~l~~~l~~~ 218 (414)
.||.|||.|...... +.+. + |+ ++.+||+| |++.|.|.+...++ .+......-
T Consensus 452 ~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~l 531 (784)
T TIGR02470 452 AADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEEL 531 (784)
T ss_pred cCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhh
Confidence 899999999765332 2211 1 22 26899999 88888887532211 111000000
Q ss_pred ccCCCCccccccCCCCCCCCccceeeecccccccc--CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCC
Q 015058 219 LHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDS 296 (414)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~ 296 (414)
.+ ..+..+.. +++ ++++| +|+++||++++||++.|++|+..+.+
T Consensus 532 l~--------------~~~~~~~~--------~G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~----------- 577 (784)
T TIGR02470 532 LF--------------SLEDNDEH--------YGYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPK----------- 577 (784)
T ss_pred cc--------------chhhHHHH--------hCCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHh-----------
Confidence 00 00000000 122 45666 89999999999999999999987754
Q ss_pred chhhhhhhhhcCCccCCCCcEEEEEEcCCCC------------hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHh---
Q 015058 297 TNEEVFLKEISDGKQYLYPRLLFIITGKGPD------------KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG--- 360 (414)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~------------~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~--- 360 (414)
..++++|+|+|+|+. .+++.++++++|+. +|+|+|...+.++.+.+|.
T Consensus 578 ----------------l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 578 ----------------LRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred ----------------hCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 134689999998753 24667789999998 9999983236667666664
Q ss_pred -hccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC--------cccchhh
Q 015058 361 -SADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS--------VVGCLFV 405 (414)
Q Consensus 361 -~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~--------~~~~~~~ 405 (414)
++|+||+|+ ..|++|++++||||||+|||+|+++| ++|.++.
T Consensus 642 d~adVfV~PS---~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVd 692 (784)
T TIGR02470 642 DTKGIFVQPA---LYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHID 692 (784)
T ss_pred ccCcEEEECC---cccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeC
Confidence 357999873 35789999999999999999999876 4677764
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.94 E-value=3.9e-24 Score=206.13 Aligned_cols=201 Identities=14% Similarity=0.093 Sum_probs=147.9
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||++++... ......+.+..++|+|+++|++.+. ..... ...+..|.++|+|+.++
T Consensus 94 ~~~~dii~~~~~~~~--~~~~~~~~~~~~~~~i~~~hd~~~~---------~~~~~-------~~~~~~d~ii~~s~~~~ 155 (359)
T cd03823 94 DFRPDVVHFHHLQGL--GVSILRAARDRGIPIVLTLHDYWLI---------CPRQG-------LFKKGGDAVIAPSRFLL 155 (359)
T ss_pred HcCCCEEEECCccch--HHHHHHHHHhcCCCEEEEEeeeeee---------cchhh-------hhccCCCEEEEeCHHHH
Confidence 479999999987221 2222233445679999999986320 00001 11123399999999999
Q ss_pred HHHHHhhC--CcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 179 HELAQNWG--IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 179 ~~l~~~~g--i~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+.+... .++.+++|+ |...+.+... ..+
T Consensus 156 ~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~----------------------------------------------~~~- 188 (359)
T cd03823 156 DRYVANGLFAEKISVIRNGIDLDRAKRPRR----------------------------------------------APP- 188 (359)
T ss_pred HHHHHcCCCccceEEecCCcChhhcccccc----------------------------------------------CCC-
Confidence 99987643 248999999 6554433210 011
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 335 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i 335 (414)
+++..++++|++.+.||++.+++|++.+.+ ++++|+++|.|+..+..+...
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-----------------------------~~~~l~i~G~~~~~~~~~~~~ 239 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-----------------------------GDIELVIVGNGLELEEESYEL 239 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHh-----------------------------cCcEEEEEcCchhhhHHHHhh
Confidence 233589999999999999999999998763 479999999998877655443
Q ss_pred HHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 336 RRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 336 ~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+.. +|+|+| +++.+++..+|++||++++|+. ..+++|++++|||+||+|||++++++.
T Consensus 240 ---~~~~~v~~~g-~~~~~~~~~~~~~ad~~i~ps~--~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 240 ---EGDPRVEFLG-AYPQEEIDDFYAEIDVLVVPSI--WPENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred ---cCCCeEEEeC-CCCHHHHHHHHHhCCEEEEcCc--ccCCCChHHHHHHHCCCCEEECCCCCH
Confidence 444 999997 9999999999999999997632 357899999999999999999998763
No 54
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.94 E-value=1.1e-24 Score=221.06 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=151.2
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHH-hhcCCeEEEEEcCcchhh-hhhc-cC--CCcHHH----HHHHHHHHHHhccCCE
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTL-LSLS-LG--RRSHFV----SIYRWIEKYYGKMANG 169 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~-~~~~~~~Iv~~H~~~~~l-~~~~-~~--~~~~~~----~i~~~~Ek~~~k~ad~ 169 (414)
..++|+||+++++. +.++. +..++|+|++.|+..... .... .. ..+++. +.+.++|+.+++.+|.
T Consensus 102 ~~~~D~v~~~~~~~------~~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 175 (397)
T TIGR03087 102 AEPVDAIVVFSSAM------AQYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIAARFDA 175 (397)
T ss_pred hCCCCEEEEecccc------ceeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhhCCe
Confidence 37999999998621 12222 346889999999863211 1110 00 112221 3345789999999999
Q ss_pred EEEeCHHHHHHHHHhhCC---cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeee
Q 015058 170 CLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTS 245 (414)
Q Consensus 170 ii~vS~~~~~~l~~~~gi---~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (414)
++++|+..++.+.+..+. ++.+|||| |.+.|.|.... . .
T Consensus 176 vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~-~----~-------------------------------- 218 (397)
T TIGR03087 176 ATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDY-P----N-------------------------------- 218 (397)
T ss_pred EEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccc-c----C--------------------------------
Confidence 999999999999875432 38899999 77777664310 0 0
Q ss_pred ccccccccCCCCCeEEEEeccCCCCCChHHHHH----HHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE
Q 015058 246 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLE----AALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 321 (414)
Q Consensus 246 ~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~Lle----A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI 321 (414)
.+.++++ +++|+|++.+.||++.+++ ++..+++ ..|+++|+|
T Consensus 219 ------~~~~~~~-~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---------------------------~~p~~~l~i 264 (397)
T TIGR03087 219 ------PYPPGKR-VLVFTGAMDYWPNIDAVVWFAERVFPAVRA---------------------------RRPAAEFYI 264 (397)
T ss_pred ------CCCCCCc-EEEEEEecCCccCHHHHHHHHHHHHHHHHH---------------------------HCCCcEEEE
Confidence 0122343 8999999999999999885 4444543 368999999
Q ss_pred EcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 322 TGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 322 ~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+|+|+.. + +++++.. +|+|.| +++ |++.+|++||++|+|+. .++|+|+|++||||||+|||+|+.+
T Consensus 265 vG~g~~~-~----~~~l~~~~~V~~~G-~v~--~~~~~~~~adv~v~Ps~--~~eG~~~~~lEAma~G~PVV~t~~~ 331 (397)
T TIGR03087 265 VGAKPSP-A----VRALAALPGVTVTG-SVA--DVRPYLAHAAVAVAPLR--IARGIQNKVLEAMAMAKPVVASPEA 331 (397)
T ss_pred ECCCChH-H----HHHhccCCCeEEee-ecC--CHHHHHHhCCEEEeccc--ccCCcccHHHHHHHcCCCEEecCcc
Confidence 9999863 2 3444544 899998 664 79999999999998742 3578999999999999999999863
No 55
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.93 E-value=1.8e-24 Score=214.14 Aligned_cols=280 Identities=14% Similarity=0.122 Sum_probs=181.3
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcc-cccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHH
Q 015058 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (414)
Q Consensus 7 ~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~-~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l 85 (414)
++++.-+ +...+|..+++.+|++. ..++++.+......... ......+....+. .. +....... .+
T Consensus 2 i~~~~~~-~~~~GG~E~~~~~l~~~-l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~----~~ 68 (351)
T cd03804 2 VAIVHDW-LVNIGGGEKVVEALARL-FPDADIFTLVDDPDKLPRLLRLKKIRTSFIQ--KL-----PFARRRYR----KY 68 (351)
T ss_pred EEEEEec-cccCCCHHHHHHHHHHh-CCCCCEEEEeecCCccchhhcCCceeechhh--hc-----hhhHhhHh----hh
Confidence 4455544 34568889999999997 66677776543221111 1111223332222 11 00111111 11
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcc---hhhh---hhccC--CC---cHHHH
Q 015058 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG---YTLL---SLSLG--RR---SHFVS 154 (414)
Q Consensus 86 ~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~---~~l~---~~~~~--~~---~~~~~ 154 (414)
..++..++..+ +..+||+||+++++ ... .+....+.|.+..+|... +... ....+ .. ....+
T Consensus 69 ~~~~~~~~~~~-~~~~~D~v~~~~~~---~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
T cd03804 69 LPLMPLAIEQF-DLSGYDLVISSSHA---VAK---GVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLH 141 (351)
T ss_pred CchhhHHHHhc-cccCCCEEEEcCcH---Hhc---cccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHH
Confidence 12222222222 34789999988651 111 111345778888888631 1100 00011 11 11234
Q ss_pred HHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCC
Q 015058 155 IYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGM 233 (414)
Q Consensus 155 i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (414)
.++..|+...+.+|.++|+|+.+++.+.+.++.+..+++|+ |.+.|.+..
T Consensus 142 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~----------------------------- 192 (351)
T cd03804 142 YLRIWDRRSAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE----------------------------- 192 (351)
T ss_pred HHHHHHHHHhcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------------------------
Confidence 55666777789999999999999999988878778899998 544443321
Q ss_pred CCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCC
Q 015058 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (414)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
...+ .++++|++.+.||++.+++|++.+
T Consensus 193 ---------------------~~~~-~il~~G~~~~~K~~~~li~a~~~~------------------------------ 220 (351)
T cd03804 193 ---------------------EKED-YYLSVGRLVPYKRIDLAIEAFNKL------------------------------ 220 (351)
T ss_pred ---------------------CCCC-EEEEEEcCccccChHHHHHHHHHC------------------------------
Confidence 0122 688999999999999999999753
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEE
Q 015058 314 YPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 314 ~p~i~liI~G~G~~~e~l~~~i~~l~l-~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi 392 (414)
| ++|+|+|+|++++++++ +. ++|+|+| ++++++++.+|++||++++++ . +++|.+++||||||+|||
T Consensus 221 -~-~~l~ivG~g~~~~~l~~-----~~~~~V~~~g-~~~~~~~~~~~~~ad~~v~ps---~-e~~g~~~~Eama~G~Pvi 288 (351)
T cd03804 221 -G-KRLVVIGDGPELDRLRA-----KAGPNVTFLG-RVSDEELRDLYARARAFLFPA---E-EDFGIVPVEAMASGTPVI 288 (351)
T ss_pred -C-CcEEEEECChhHHHHHh-----hcCCCEEEec-CCCHHHHHHHHHhCCEEEECC---c-CCCCchHHHHHHcCCCEE
Confidence 3 78999999998887776 33 4999997 999999999999999999763 3 678899999999999999
Q ss_pred EeeeCCc
Q 015058 393 LLWTCSV 399 (414)
Q Consensus 393 ~s~~~~~ 399 (414)
+++.+|.
T Consensus 289 ~~~~~~~ 295 (351)
T cd03804 289 AYGKGGA 295 (351)
T ss_pred EeCCCCC
Confidence 9987653
No 56
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=8.4e-24 Score=226.51 Aligned_cols=296 Identities=11% Similarity=0.024 Sum_probs=192.2
Q ss_pred CEEEEEEeCCCCCChHHH----HHHHHHHhhCCCcEEEEecCCCCC-----Cc-c-cc---------------c----CC
Q 015058 5 GRACVVVLGDLGRSPRMQ----YQALSLARQMSLEVDVVAYGGSKP-----HA-A-IL---------------E----HP 54 (414)
Q Consensus 5 ~~~~v~~~~d~~~~~r~~----~~a~~La~~~g~eV~vv~~~~~~~-----~~-~-~~---------------~----~~ 54 (414)
..+.|+..+.++...|.. ..|-.|++..+++|+++-+.-... ++ . .+ + .+
T Consensus 323 r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~ 402 (794)
T PLN02501 323 RHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKA 402 (794)
T ss_pred CeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCC
Confidence 468999999887554433 467778875578999986652210 01 0 00 0 13
Q ss_pred CeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHH--HHHHHhhcCCeEEE
Q 015058 55 SIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVA--VKWASSLRRSAFIV 132 (414)
Q Consensus 55 ~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~--~~la~~~~~~~~Iv 132 (414)
+..|...|++.- ..... ..++-.+.+.+. ..+|||||+++|..+ +++ |..+++..+ |+|.
T Consensus 403 ~~~i~fYpg~~~--~~~~S-I~p~gdI~~~L~------------~f~PDVVHLatP~~L--Gw~~~Glr~ArKl~-PVVa 464 (794)
T PLN02501 403 DFKISFYPGKFS--KERRS-IIPAGDTSQFIP------------SKDADIAILEEPEHL--NWYHHGKRWTDKFN-HVVG 464 (794)
T ss_pred CceEEeecchhc--cCCcc-ccchHHHHHHhh------------ccCCCEEEECCchhh--ccHHHHHHHHHHcC-CeEE
Confidence 444544442211 11111 112222222222 369999999998432 233 444444456 8888
Q ss_pred EEcCcchhhhhhccCCCcHHHH-HHHHHHHHHhcc-CCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHH
Q 015058 133 DWHNFGYTLLSLSLGRRSHFVS-IYRWIEKYYGKM-ANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKH 209 (414)
Q Consensus 133 ~~H~~~~~l~~~~~~~~~~~~~-i~~~~Ek~~~k~-ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~ 209 (414)
++|-....... .+ ...++.. +.+++++|+.+. ||.++|+|..+++ +... + +..+ || |+++|+|....
T Consensus 465 syHTny~eYl~-~y-~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L~~~-v--I~nV-nGVDte~F~P~~r~--- 534 (794)
T PLN02501 465 VVHTNYLEYIK-RE-KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-LPKS-V--ICNV-HGVNPKFLKIGEKV--- 534 (794)
T ss_pred EEeCCcHHHHh-Hh-cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-hccc-c--eeec-ccccccccCCcchh---
Confidence 88865322111 12 1233333 233445555433 8999999988884 4221 2 2222 57 89999987532
Q ss_pred HHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhh
Q 015058 210 ELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAA 289 (414)
Q Consensus 210 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~ 289 (414)
..+++++ ++... ..++|+||+.++||++.||+|++.+.+
T Consensus 535 ~~~r~lg------------------------------------i~~~~-kgiLfVGRLa~EKGld~LLeAla~L~~---- 573 (794)
T PLN02501 535 AEERELG------------------------------------QQAFS-KGAYFLGKMVWAKGYRELIDLLAKHKN---- 573 (794)
T ss_pred HHHHhcC------------------------------------Ccccc-CceEEEEcccccCCHHHHHHHHHHHHh----
Confidence 1112222 22222 257899999999999999999998875
Q ss_pred hhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeec
Q 015058 290 ILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLH 369 (414)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~ 369 (414)
..|+++|+|+|+||++++++++++++++ +|.|+| ..++.+.+|+++|+||+|+
T Consensus 574 -----------------------~~pnvrLvIVGDGP~reeLe~la~eLgL-~V~FLG---~~dd~~~lyasaDVFVlPS 626 (794)
T PLN02501 574 -----------------------ELDGFNLDVFGNGEDAHEVQRAAKRLDL-NLNFLK---GRDHADDSLHGYKVFINPS 626 (794)
T ss_pred -----------------------hCCCeEEEEEcCCccHHHHHHHHHHcCC-EEEecC---CCCCHHHHHHhCCEEEECC
Confidence 2578999999999999999999999988 499998 5777889999999999874
Q ss_pred cCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 370 TSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 370 ~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
. .|+||++++||||||+|||+++.+|.
T Consensus 627 ~---sEgFGlVlLEAMA~GlPVVATd~pG~ 653 (794)
T PLN02501 627 I---SDVLCTATAEALAMGKFVVCADHPSN 653 (794)
T ss_pred C---cccchHHHHHHHHcCCCEEEecCCCC
Confidence 3 47899999999999999999998764
No 57
>PLN00142 sucrose synthase
Probab=99.93 E-value=5.2e-24 Score=233.25 Aligned_cols=321 Identities=12% Similarity=0.048 Sum_probs=198.3
Q ss_pred HHHHhhCCCcEE----EEecCCCCCC--------cccccCCCeEEEEeecCCCCCC-CCCCchHHHHHHHHHHHHHHHHH
Q 015058 26 LSLARQMSLEVD----VVAYGGSKPH--------AAILEHPSIHIHTMTQWPTIPR-GLPKVLKPVLLLLKPLIQFFMLL 92 (414)
Q Consensus 26 ~~La~~~g~eV~----vv~~~~~~~~--------~~~~~~~~i~i~~v~~~~~~~~-~~~~~~~~~~~l~k~l~~~~~l~ 92 (414)
..|+++ ||+|+ |+|..-.... ..+...++++|.++| ..+.. ..++.. .-..++.++..|..-+
T Consensus 322 ~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP--~g~~~~~l~~~i-~ke~l~p~L~~f~~~~ 397 (815)
T PLN00142 322 LRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVP--FRTEKGILRKWI-SRFDVWPYLETFAEDA 397 (815)
T ss_pred HHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecC--CCCCcccccccc-CHHHHHHHHHHHHHHH
Confidence 566775 99874 8887532210 122224589999998 43321 111111 1122334444433322
Q ss_pred H-HHhh-hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhh---hccCCCcHHHHHH--HHHHHHHhc
Q 015058 93 W-FLCV-KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS---LSLGRRSHFVSIY--RWIEKYYGK 165 (414)
Q Consensus 93 ~-~l~~-k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~---~~~~~~~~~~~i~--~~~Ek~~~k 165 (414)
. .+.. ...+||+||+|.+ .++.+|..+++..|+|++.+.|...-+-.. ..+......+++. ...|+....
T Consensus 398 ~~~~~~~~~~~PDlIHaHYw---dsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~ 474 (815)
T PLN00142 398 ASEILAELQGKPDLIIGNYS---DGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMN 474 (815)
T ss_pred HHHHHHhcCCCCCEEEECCc---cHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHH
Confidence 1 1211 1257999999988 677888888888999999999977422110 0000001112222 234788888
Q ss_pred cCCEEEEeCHHHHHHH----H---Hh------------hCC-----cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhcc
Q 015058 166 MANGCLCVTQAMQHEL----A---QN------------WGI-----KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILH 220 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~l----~---~~------------~gi-----~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~ 220 (414)
.||.||+.|.+.+..+ . .+ .|+ ++.+|++| |...|.|....++ .+. .+.
T Consensus 475 ~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~-rl~-~l~---- 548 (815)
T PLN00142 475 HADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQK-RLT-SLH---- 548 (815)
T ss_pred hhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHh-hHH-hhc----
Confidence 9999999998776422 1 10 133 36889999 8888888653211 110 100
Q ss_pred CCCCccccccCCCCCCCCccceeeec-ccccccc--CCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCc
Q 015058 221 QPLGVQDCVSNGMEGQKADETIFTSL-AGIDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDST 297 (414)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~ 297 (414)
|+.+. .+|.-. ....+++ ++++| +|+++||+.++||++.||+|+..+.+
T Consensus 549 ----------n~I~~-----~l~~~~~~~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~------------ 600 (815)
T PLN00142 549 ----------PSIEE-----LLYSPEQNDEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKR------------ 600 (815)
T ss_pred ----------ccchh-----hcCChHHHHHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHH------------
Confidence 11110 000000 0001122 34555 89999999999999999999998765
Q ss_pred hhhhhhhhhcCCccCCCCcEEEEEEcCCC------Ch------HHHHHHHHHcCCC-cEEEecC---CCChhhHHHHHh-
Q 015058 298 NEEVFLKEISDGKQYLYPRLLFIITGKGP------DK------ESYEEKIRRLRLK-RVAFRTM---WLSAEDYPLLLG- 360 (414)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~i~liI~G~G~------~~------e~l~~~i~~l~l~-~V~f~g~---~v~~ed~~~~l~- 360 (414)
..++++|+|+|+|+ +. ++++++++++++. +|+|+|. .++.+++..+++
T Consensus 601 ---------------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iad 665 (815)
T PLN00142 601 ---------------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIAD 665 (815)
T ss_pred ---------------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHh
Confidence 24579999999882 11 3477789999998 9999872 233456777776
Q ss_pred hccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC--------cccchhh
Q 015058 361 SADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS--------VVGCLFV 405 (414)
Q Consensus 361 ~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~--------~~~~~~~ 405 (414)
++|+||+|+ ..|+||++++||||||+|||+|+++| ++|.++.
T Consensus 666 aaDVfVlPS---~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~ 715 (815)
T PLN00142 666 TKGAFVQPA---LYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHID 715 (815)
T ss_pred hCCEEEeCC---cccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeC
Confidence 579999763 35789999999999999999999876 4677764
No 58
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.92 E-value=7.7e-25 Score=217.51 Aligned_cols=297 Identities=12% Similarity=0.056 Sum_probs=202.3
Q ss_pred EEEEeCCCCCChHHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHH
Q 015058 8 CVVVLGDLGRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (414)
Q Consensus 8 ~v~~~~d~~~~~r~~~~a~~La~~---~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~ 84 (414)
+++.-.=|+..+++..+...|++. +||.|.+++..-.....-....++.+++++|-... .+ -.-.+..+
T Consensus 4 ~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~-~n-~tT~ptv~------ 75 (426)
T KOG1111|consen 4 LMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVG-YN-QTTFPTVF------ 75 (426)
T ss_pred eeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeee-ec-ccchhhhh------
Confidence 334333334556666555555443 69999999855322111122346799999882111 11 00011111
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHh
Q 015058 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG 164 (414)
Q Consensus 85 l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~ 164 (414)
..+-++...+. .++..+||-|++.+..+- =+.+.++..|.+.++|=|.+.. +.. .-......+-++..
T Consensus 76 --~~~Pllr~i~l-rE~I~ivhghs~fS~lah-e~l~hartMGlktVfTdHSlfG------fad--~~si~~n~ll~~sL 143 (426)
T KOG1111|consen 76 --SDFPLLRPILL-RERIEIVHGHSPFSYLAH-EALMHARTMGLKTVFTDHSLFG------FAD--IGSILTNKLLPLSL 143 (426)
T ss_pred --ccCcccchhhh-hhceEEEecCChHHHHHH-HHHHHHHhcCceEEEecccccc------ccc--hhhhhhcceeeeee
Confidence 11111111111 269999999988432221 1455667789999998888521 111 10111122234555
Q ss_pred ccCCEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCcc
Q 015058 165 KMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (414)
Q Consensus 165 k~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
...|.+||+|...++...-+..++ +.+|||. +.+.|.|.+.+ +
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-~-------------------------------- 190 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-K-------------------------------- 190 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-c--------------------------------
Confidence 788999999999888644332333 8899999 88889886521 1
Q ss_pred ceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEE
Q 015058 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (414)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~li 320 (414)
+.+..+.++.++|+-.+||+|.|+++...+.+ ++|+++|+
T Consensus 191 -------------~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~---------------------------~~p~vrfi 230 (426)
T KOG1111|consen 191 -------------PSADIITIVVASRLVYRKGIDLLLEIIPSVCD---------------------------KHPEVRFI 230 (426)
T ss_pred -------------CCCCeeEEEEEeeeeeccchHHHHHHHHHHHh---------------------------cCCCeeEE
Confidence 11112578999999999999999999999886 58999999
Q ss_pred EEcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 321 ITGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 321 I~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
|+||||.+..|||..+++.++ +|.++| -++++++.+.|.+.|+|+.+ |..|.|.+.++||++||+|||++.++|.
T Consensus 231 i~GDGPk~i~lee~lEk~~l~~rV~~lG-~v~h~~Vr~vl~~G~IFlnt---SlTEafc~~ivEAaScGL~VVsTrVGGI 306 (426)
T KOG1111|consen 231 IIGDGPKRIDLEEMLEKLFLQDRVVMLG-TVPHDRVRDVLVRGDIFLNT---SLTEAFCMVIVEAASCGLPVVSTRVGGI 306 (426)
T ss_pred EecCCcccchHHHHHHHhhccCceEEec-ccchHHHHHHHhcCcEEecc---HHHHHHHHHHHHHHhCCCEEEEeecCCc
Confidence 999999999999999999999 999998 99999999999999999954 3357899999999999999999999996
Q ss_pred cc
Q 015058 400 VG 401 (414)
Q Consensus 400 ~~ 401 (414)
--
T Consensus 307 pe 308 (426)
T KOG1111|consen 307 PE 308 (426)
T ss_pred cc
Confidence 43
No 59
>PLN02949 transferase, transferring glycosyl groups
Probab=99.92 E-value=3e-23 Score=217.13 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCc--EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCcccccc
Q 015058 154 SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVS 230 (414)
Q Consensus 154 ~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~--i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 230 (414)
+.+.+++++..+.||.++|+|+..++.+.+.|+.+ +.++||+ +.+.|.+.+.
T Consensus 208 ~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~------------------------- 262 (463)
T PLN02949 208 RAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPL------------------------- 262 (463)
T ss_pred HHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCc-------------------------
Confidence 33444667777999999999999999998877653 7889988 5433321110
Q ss_pred CCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCc
Q 015058 231 NGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 310 (414)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
.-+++++ .++++||+.++||++.+|+|+..+.++. .+
T Consensus 263 ---------------------~~~~~~~-~il~vGR~~~~Kg~~llI~A~~~l~~~~-------------------~~-- 299 (463)
T PLN02949 263 ---------------------ERSEDPP-YIISVAQFRPEKAHALQLEAFALALEKL-------------------DA-- 299 (463)
T ss_pred ---------------------cccCCCC-EEEEEEeeeccCCHHHHHHHHHHHHHhc-------------------cc--
Confidence 0011233 7889999999999999999999876521 00
Q ss_pred cCCCCcEEEEEEcCCCC------hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH
Q 015058 311 QYLYPRLLFIITGKGPD------KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY 383 (414)
Q Consensus 311 ~~~~p~i~liI~G~G~~------~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E 383 (414)
..|+++|+|+|+|+. .+++++++++++++ +|+|+| +++.++++.+|+.||++|.+ +..|+||++++|
T Consensus 300 --~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g-~v~~~el~~ll~~a~~~v~~---s~~E~FGivvlE 373 (463)
T PLN02949 300 --DVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHK-NVSYRDLVRLLGGAVAGLHS---MIDEHFGISVVE 373 (463)
T ss_pred --cCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeC-CCCHHHHHHHHHhCcEEEeC---CccCCCChHHHH
Confidence 247899999999853 25788999999998 999997 99999999999999999953 346889999999
Q ss_pred HHHcCCeEEEeeeCC
Q 015058 384 CWYSRYSLKLLWTCS 398 (414)
Q Consensus 384 ama~G~Pvi~s~~~~ 398 (414)
|||||+|||+++.+|
T Consensus 374 AMA~G~PVIa~~~gG 388 (463)
T PLN02949 374 YMAAGAVPIAHNSAG 388 (463)
T ss_pred HHHcCCcEEEeCCCC
Confidence 999999999999876
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.92 E-value=3.3e-23 Score=202.66 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=152.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcchhhhhhcc-----------------CC-C--cHHHHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSL-----------------GR-R--SHFVSIYRW 158 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~~~l~~~~~-----------------~~-~--~~~~~i~~~ 158 (414)
.+||+||+|.+... .+...++.+. .++|+|++.|++......... .. . .......++
T Consensus 50 ~~~diih~~~~~~~--~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (365)
T cd03825 50 INADIVHLHWIHGG--FLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRR 127 (365)
T ss_pred ccCCEEEEEccccC--ccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHH
Confidence 79999999985322 1111222332 489999999986211000000 00 0 122333344
Q ss_pred HHHHHhccCCEEEEeCHHHHHHHHHhhCC---cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCC
Q 015058 159 IEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGME 234 (414)
Q Consensus 159 ~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi---~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (414)
..+.+.+.++.++++|+.+++.+.+.+.. ++.++||+ +.+.|.|.+. ...+.++
T Consensus 128 ~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~---~~~~~~~------------------- 185 (365)
T cd03825 128 KRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK---REARKRL------------------- 185 (365)
T ss_pred HHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH---HHHHHHh-------------------
Confidence 44445467889999999999998876433 48999999 7777766642 2333332
Q ss_pred CCCCccceeeeccccccccCCCCCeEEEEeccCCC--CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccC
Q 015058 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 312 (414)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~--~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (414)
+++++++ +++++|+... .||++.+++|++.+.++
T Consensus 186 -----------------~~~~~~~-~i~~~~~~~~~~~K~~~~ll~a~~~l~~~-------------------------- 221 (365)
T cd03825 186 -----------------GLPADKK-IILFGAVGGTDPRKGFDELIEALKRLAER-------------------------- 221 (365)
T ss_pred -----------------CCCCCCe-EEEEEecCCCccccCHHHHHHHHHHhhhc--------------------------
Confidence 2344443 6666666655 89999999999988751
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHcCCC-cEEEecCCCC-hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCe
Q 015058 313 LYPRLLFIITGKGPDKESYEEKIRRLRLK-RVAFRTMWLS-AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYS 390 (414)
Q Consensus 313 ~~p~i~liI~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~-~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~P 390 (414)
..++++++++|+|+..+.. +++ +|.|+| +++ .++++.+|++||++++++ ..+++|.+++|||+||+|
T Consensus 222 ~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g-~~~~~~~~~~~~~~ad~~l~ps---~~e~~g~~~~Eam~~g~P 290 (365)
T cd03825 222 WKDDIELVVFGASDPEIPP-------DLPFPVHYLG-SLNDDESLALIYSAADVFVVPS---LQENFPNTAIEALACGTP 290 (365)
T ss_pred cCCCeEEEEeCCCchhhhc-------cCCCceEecC-CcCCHHHHHHHHHhCCEEEecc---ccccccHHHHHHHhcCCC
Confidence 1478999999999865431 455 899997 888 889999999999999763 357899999999999999
Q ss_pred EEEeeeCCcc
Q 015058 391 LKLLWTCSVV 400 (414)
Q Consensus 391 vi~s~~~~~~ 400 (414)
||+++++|..
T Consensus 291 vI~~~~~~~~ 300 (365)
T cd03825 291 VVAFDVGGIP 300 (365)
T ss_pred EEEecCCCCh
Confidence 9999987754
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.92 E-value=4.9e-23 Score=211.09 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=154.5
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCC-eEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRS-AFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~-~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
.++|++|.+-. .+...++.++++..+. ++|++.|++.... ... ...+..+.+++.+.+|.++|+|+.++
T Consensus 126 ~~~~v~~sy~~--~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~-----~~~---~~~~~~~~~~~~~~~d~ii~~S~~~~ 195 (407)
T cd04946 126 GQGTVFYSYWL--HETAYALALLKKEYLRKRVISRAHGYDLYE-----DRY---PSGYIPLRRYLLSSLDAVFPCSEQGR 195 (407)
T ss_pred cCceEEEEecC--chHHHHHHHHHHhcCCceEEEEeccchhhh-----hhc---cccchHHHHHHHhcCCEEEECCHHHH
Confidence 45567666533 2333333334444444 5899999864210 000 11122344566789999999999999
Q ss_pred HHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 179 HELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
+++.+.++.. +.++||| +.+.+.+.. .
T Consensus 196 ~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~-------------------------------------------------~ 226 (407)
T cd04946 196 NYLQKRYPAYKEKIKVSYLGVSDPGIISKP-------------------------------------------------S 226 (407)
T ss_pred HHHHHHCCCccccEEEEECCcccccccCCC-------------------------------------------------C
Confidence 9999887754 7889999 433332110 0
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCC--cEEEEEEcCCCChHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP--RLLFIITGKGPDKESYE 332 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~i~liI~G~G~~~e~l~ 332 (414)
.++++.++++|++.+.||++.+++|+..+.++ .| ++.++++|+|++.+.++
T Consensus 227 ~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~~~iiG~g~~~~~l~ 279 (407)
T cd04946 227 KDDTLRIVSCSYLVPVKRVDLIIKALAALAKA---------------------------RPSIKIKWTHIGGGPLEDTLK 279 (407)
T ss_pred CCCCEEEEEeeccccccCHHHHHHHHHHHHHh---------------------------CCCceEEEEEEeCchHHHHHH
Confidence 12235899999999999999999999999863 33 57889999999999999
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhh--ccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~--aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+++++++.. +|+|+| +++.+|+..+|+. ||++|.++ ..+|+|.+++||||||+|||+|+++|.
T Consensus 280 ~~~~~~~~~~~V~f~G-~v~~~e~~~~~~~~~~~v~v~~S---~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 280 ELAESKPENISVNFTG-ELSNSEVYKLYKENPVDVFVNLS---ESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred HHHHhcCCCceEEEec-CCChHHHHHHHhhcCCCEEEeCC---ccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 999988888 999997 9999999999976 67777543 357899999999999999999998765
No 62
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.91 E-value=4.3e-22 Score=204.84 Aligned_cols=297 Identities=10% Similarity=0.024 Sum_probs=176.2
Q ss_pred CCEEEEEEeCCCCCChHHHH-HHHHHHhhCCCcEEEEecCCCCCCcccccCCCe-EEEEeecCCCCCCCCCCchHHHHHH
Q 015058 4 RGRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSI-HIHTMTQWPTIPRGLPKVLKPVLLL 81 (414)
Q Consensus 4 ~~~~~v~~~~d~~~~~r~~~-~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i-~i~~v~~~~~~~~~~~~~~~~~~~l 81 (414)
||.+.|.+...+|+.+|+-. .+..+.++ ||+|+++...+..+.... ...++ .++... ++ ....+..+
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~--~~-------~~~~~~~~ 69 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYGKGGKESV-SHQNYPQVIKHT--PR-------MTAMANIA 69 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecCCCccccc-ccCCcceEEEec--cc-------HHHHHHHH
Confidence 47788887777777777654 45666665 999999887654432211 12222 222222 11 11111110
Q ss_pred ------HHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCch-HH-HHHHH---H-HhhcCCeEEEEEcCcc-hh--------
Q 015058 82 ------LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVP-TL-VAVKW---A-SSLRRSAFIVDWHNFG-YT-------- 140 (414)
Q Consensus 82 ------~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~-~~-~~~~l---a-~~~~~~~~Iv~~H~~~-~~-------- 140 (414)
...+.. ..-..++..+..+|||||.|+.-... .. .+..+ + .+..++|+|.|.|+.- .+
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~ 148 (405)
T PRK10125 70 LFRLFNRDLFGN-FNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDG 148 (405)
T ss_pred HHHhcchhhcch-HHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcc
Confidence 000011 11111122235799999999752211 11 11211 1 1234789999999862 11
Q ss_pred ---hh-h------hc-cCC--CcHHHHHHHHHHHHH---hccCCEEEEeCHHHHHHHHHhhCCc-EEEecCC-CCCCcCC
Q 015058 141 ---LL-S------LS-LGR--RSHFVSIYRWIEKYY---GKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHP 202 (414)
Q Consensus 141 ---l~-~------~~-~~~--~~~~~~i~~~~Ek~~---~k~ad~ii~vS~~~~~~l~~~~gi~-i~vI~n~-~~~~f~p 202 (414)
.. . +. +.. .....+.+..-.+.+ .+.++.++++|+.+++.+.+.++.. +.+|||| |++.+.+
T Consensus 149 C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~ 228 (405)
T PRK10125 149 CEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAI 228 (405)
T ss_pred cccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccc
Confidence 00 0 00 000 001111111112222 3457899999999999988766644 8999999 6543332
Q ss_pred CChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccC--CCCCChHHHHHHH
Q 015058 203 TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILLEAA 280 (414)
Q Consensus 203 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl--~~~Kg~~~LleA~ 280 (414)
.+. .... ..+++++ +++++|+. .+.||++.|++|+
T Consensus 229 ~~~--~~~~----------------------------------------~~~~~~~-~il~v~~~~~~~~Kg~~~li~A~ 265 (405)
T PRK10125 229 LAE--LPPV----------------------------------------RETQGKP-KIAVVAHDLRYDGKTDQQLVREM 265 (405)
T ss_pred ccc--cccc----------------------------------------ccCCCCC-EEEEEEeccccCCccHHHHHHHH
Confidence 210 0000 0122343 78888983 4789999999999
Q ss_pred HHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCC-ChhhHHHHH
Q 015058 281 LMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL-SAEDYPLLL 359 (414)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v-~~ed~~~~l 359 (414)
..+. ++++|+|+|+|+... ..+|.++| +. +.+++..+|
T Consensus 266 ~~l~------------------------------~~~~L~ivG~g~~~~----------~~~v~~~g-~~~~~~~l~~~y 304 (405)
T PRK10125 266 MALG------------------------------DKIELHTFGKFSPFT----------AGNVVNHG-FETDKRKLMSAL 304 (405)
T ss_pred HhCC------------------------------CCeEEEEEcCCCccc----------ccceEEec-CcCCHHHHHHHH
Confidence 8753 368999999986532 13688887 54 668999999
Q ss_pred hhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 360 GSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 360 ~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++||+||+|+ ..|++|++++||||||+|||+|+++|.
T Consensus 305 ~~aDvfV~pS---~~Egfp~vilEAmA~G~PVVat~~gG~ 341 (405)
T PRK10125 305 NQMDALVFSS---RVDNYPLILCEALSIGVPVIATHSDAA 341 (405)
T ss_pred HhCCEEEECC---ccccCcCHHHHHHHcCCCEEEeCCCCh
Confidence 9999999763 368999999999999999999999883
No 63
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.91 E-value=9.8e-23 Score=215.13 Aligned_cols=215 Identities=11% Similarity=0.133 Sum_probs=157.5
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcH-HHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~-~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
.++||+|+..++. ...+ ++.....+|+++.+|+..+.-. ....... +...+.+.-+ ..+.+|.+|++|+..+
T Consensus 210 ~~~di~i~dr~~~---~~~~-~~~~~~~~~~v~~lH~~h~~~~--~~~~~~~~~~~~y~~~~~-~~~~~D~iI~~S~~~~ 282 (500)
T TIGR02918 210 TKKDIIILDRSTG---IGQA-VLENKGPAKLGVVVHAEHFSES--ATNETYILWNNYYEYQFS-NADYIDFFITATDIQN 282 (500)
T ss_pred CCCCEEEEcCCcc---cchH-HHhcCCCceEEEEEChhhhcCc--cCcchhHHHHHHHHHHHh-chhhCCEEEECCHHHH
Confidence 6899999998742 1112 3344557899999998543110 0111111 2222222111 2367899999999999
Q ss_pred HHHHHhhC------CcEEEecCCC-CCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 179 HELAQNWG------IKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 179 ~~l~~~~g------i~i~vI~n~~-~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
+.+.+.++ .++.+||||. ...+.|..
T Consensus 283 ~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~----------------------------------------------- 315 (500)
T TIGR02918 283 QILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ----------------------------------------------- 315 (500)
T ss_pred HHHHHHhhhhcCCCCcEEEEcCCCcccccCccc-----------------------------------------------
Confidence 88887653 1278999993 22222210
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHH
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 331 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l 331 (414)
..++..|+++||+.++||++.||+|+..+.+ ..|+++|.|+|+|++++++
T Consensus 316 ---~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~---------------------------~~p~~~l~i~G~G~~~~~l 365 (500)
T TIGR02918 316 ---ERKPFSIITASRLAKEKHIDWLVKAVVKAKK---------------------------SVPELTFDIYGEGGEKQKL 365 (500)
T ss_pred ---ccCCeEEEEEeccccccCHHHHHHHHHHHHh---------------------------hCCCeEEEEEECchhHHHH
Confidence 0123489999999999999999999999886 3789999999999999999
Q ss_pred HHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC---------Cccc
Q 015058 332 EEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC---------SVVG 401 (414)
Q Consensus 332 ~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~---------~~~~ 401 (414)
++++++++++ +|.|.| + .+++.+|+.||++|+|+ ..|++|++++||||||+|||+++++ |.+|
T Consensus 366 ~~~i~~~~l~~~V~f~G-~---~~~~~~~~~adv~v~pS---~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG 438 (500)
T TIGR02918 366 QKIINENQAQDYIHLKG-H---RNLSEVYKDYELYLSAS---TSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNG 438 (500)
T ss_pred HHHHHHcCCCCeEEEcC-C---CCHHHHHHhCCEEEEcC---ccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCE
Confidence 9999999998 899998 3 37899999999999764 3578999999999999999999975 4578
Q ss_pred chhh
Q 015058 402 CLFV 405 (414)
Q Consensus 402 ~~~~ 405 (414)
.++-
T Consensus 439 ~lv~ 442 (500)
T TIGR02918 439 YLIP 442 (500)
T ss_pred EEEe
Confidence 8764
No 64
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=1.1e-21 Score=193.76 Aligned_cols=265 Identities=19% Similarity=0.099 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Q 015058 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (414)
Q Consensus 20 r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~ 99 (414)
++...++.|.++ ||+|+++|..... .....+..++++++++ .....+.. ....+...+..+..+.. +.+++ +.
T Consensus 15 ~~~~la~~l~~~-G~ev~v~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~i-~~ 87 (350)
T cd03785 15 PALALAEELRER-GAEVLFLGTKRGL-EARLVPKAGIPLHTIP--VGGLRRKG-SLKKLKAPFKLLKGVLQ-ARKIL-KK 87 (350)
T ss_pred HHHHHHHHHHhC-CCEEEEEECCCcc-hhhcccccCCceEEEE--ecCcCCCC-hHHHHHHHHHHHHHHHH-HHHHH-Hh
Confidence 344677888886 9999999976432 1222233578898887 22111111 11111111111111111 11222 34
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.+||+||+++++ ..+.+.++++..++|+++..|+.. .. ..++++++.+|.++++|+.+++
T Consensus 88 ~~pDvI~~~~~~---~~~~~~~~a~~~~~p~v~~~~~~~----------~~-------~~~~~~~~~~~~vi~~s~~~~~ 147 (350)
T cd03785 88 FKPDVVVGFGGY---VSGPVGLAAKLLGIPLVIHEQNAV----------PG-------LANRLLARFADRVALSFPETAK 147 (350)
T ss_pred cCCCEEEECCCC---cchHHHHHHHHhCCCEEEEcCCCC----------cc-------HHHHHHHHhhCEEEEcchhhhh
Confidence 799999999863 234455667778999987544421 11 2356677889999999999887
Q ss_pred HHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCC
Q 015058 180 ELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (414)
Q Consensus 180 ~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (414)
+ ..+.++.+++|+ +.+.|.+.+ . ++++ +++++++
T Consensus 148 ~---~~~~~~~~i~n~v~~~~~~~~~--~----~~~~------------------------------------~~~~~~~ 182 (350)
T cd03785 148 Y---FPKDKAVVTGNPVREEILALDR--E----RARL------------------------------------GLRPGKP 182 (350)
T ss_pred c---CCCCcEEEECCCCchHHhhhhh--h----HHhc------------------------------------CCCCCCe
Confidence 6 223458899999 555554431 1 2222 2444554
Q ss_pred eEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEE-EEEEcCCCChHHHHHHHH
Q 015058 259 ALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPDKESYEEKIR 336 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-liI~G~G~~~e~l~~~i~ 336 (414)
+|+++|+....|+... +++|++.+.+ +++. ++++|+| +++++++.++
T Consensus 183 -~i~~~~g~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~i~G~g-~~~~l~~~~~ 231 (350)
T cd03785 183 -TLLVFGGSQGARAINEAVPEALAELLR-----------------------------KRLQVIHQTGKG-DLEEVKKAYE 231 (350)
T ss_pred -EEEEECCcHhHHHHHHHHHHHHHHhhc-----------------------------cCeEEEEEcCCc-cHHHHHHHHh
Confidence 6666666556667654 4588877752 2455 5688999 6688999988
Q ss_pred HcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 337 ~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++ ..+|.|.| ++ ++++.+|+.||++|+. ++ +++++|||++|+|||++...+
T Consensus 232 ~~-~~~v~~~g-~~--~~~~~~l~~ad~~v~~----sg---~~t~~Eam~~G~Pvv~~~~~~ 282 (350)
T cd03785 232 EL-GVNYEVFP-FI--DDMAAAYAAADLVISR----AG---ASTVAELAALGLPAILIPLPY 282 (350)
T ss_pred cc-CCCeEEee-hh--hhHHHHHHhcCEEEEC----CC---HhHHHHHHHhCCCEEEeecCC
Confidence 87 34899998 54 8999999999999952 22 578999999999999987543
No 65
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.90 E-value=1.8e-21 Score=194.24 Aligned_cols=278 Identities=16% Similarity=0.077 Sum_probs=175.4
Q ss_pred CEEEEEEeCCCCCChH-HHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHH
Q 015058 5 GRACVVVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (414)
Q Consensus 5 ~~~~v~~~~d~~~~~r-~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k 83 (414)
.++.+++.+ .|++.+ +...+..|.++ ||+|++++...+. .....+..++++++++ .....+.+ ....+....+
T Consensus 2 ~~i~i~~~g-~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~~-~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGGG-TGGHVFPALALAEELKKR-GWEVLYLGTARGM-EARLVPKAGIEFHFIP--SGGLRRKG-SLANLKAPFK 75 (357)
T ss_pred cEEEEEcCc-chHhhhHHHHHHHHHHhC-CCEEEEEECCCch-hhhccccCCCcEEEEe--ccCcCCCC-hHHHHHHHHH
Confidence 344555444 343333 34677788775 9999999986532 1222234688999987 32111111 1111222222
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHH
Q 015058 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (414)
Q Consensus 84 ~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~ 163 (414)
.+..+. .+++++ +..+||+||+|++ ...+.+.++++..++|+|++.|+.. .. +.+++.
T Consensus 76 ~~~~~~-~~~~~i-k~~~pDvv~~~~~---~~~~~~~~~~~~~~~p~v~~~~~~~----------~~-------~~~r~~ 133 (357)
T PRK00726 76 LLKGVL-QARKIL-KRFKPDVVVGFGG---YVSGPGGLAARLLGIPLVIHEQNAV----------PG-------LANKLL 133 (357)
T ss_pred HHHHHH-HHHHHH-HhcCCCEEEECCC---cchhHHHHHHHHcCCCEEEEcCCCC----------cc-------HHHHHH
Confidence 222211 222333 3478999999986 2234556777788999997655431 11 245677
Q ss_pred hccCCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccce
Q 015058 164 GKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (414)
Q Consensus 164 ~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (414)
++.+|.+++.++.+.. +.-+.++.+++|+ +.+.+.+.. . +.++
T Consensus 134 ~~~~d~ii~~~~~~~~---~~~~~~i~vi~n~v~~~~~~~~~--~----~~~~--------------------------- 177 (357)
T PRK00726 134 ARFAKKVATAFPGAFP---EFFKPKAVVTGNPVREEILALAA--P----PARL--------------------------- 177 (357)
T ss_pred HHHhchheECchhhhh---ccCCCCEEEECCCCChHhhcccc--h----hhhc---------------------------
Confidence 7899999999986532 2223459999999 554443321 1 1111
Q ss_pred eeeccccccccCCCCCeEEEEeccCCCCCChHHHH-HHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE
Q 015058 243 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILL-EAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 321 (414)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~Ll-eA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI 321 (414)
+++++.+ +|+++|+..+.|++..++ +|++.+.+ .+ ..+++
T Consensus 178 ---------~~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~~~~----------------------------~~-~~~~~ 218 (357)
T PRK00726 178 ---------AGREGKP-TLLVVGGSQGARVLNEAVPEALALLPE----------------------------AL-QVIHQ 218 (357)
T ss_pred ---------cCCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhh----------------------------Cc-EEEEE
Confidence 2333443 777888888888876665 88887753 24 56789
Q ss_pred EcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 322 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 322 ~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
+|+|+. +++++..+ ++++ |.|.| + .++++.+|++||++|+. +| |++++|||++|+|+|++..++
T Consensus 219 ~G~g~~-~~~~~~~~-~~~~-v~~~g-~--~~~~~~~~~~~d~~i~~----~g---~~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 219 TGKGDL-EEVRAAYA-AGIN-AEVVP-F--IDDMAAAYAAADLVICR----AG---ASTVAELAAAGLPAILVPLPH 282 (357)
T ss_pred cCCCcH-HHHHHHhh-cCCc-EEEee-h--HhhHHHHHHhCCEEEEC----CC---HHHHHHHHHhCCCEEEecCCC
Confidence 999986 45555556 7776 99998 5 48999999999999952 22 689999999999999987643
No 66
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.90 E-value=5.1e-22 Score=197.86 Aligned_cols=218 Identities=15% Similarity=0.191 Sum_probs=160.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.++|+++++.+.... . .+.......+.++.+|+....... ......+...++++.+. .+.+|.++|+|+..++
T Consensus 98 ~~~diii~~~~~~~~--~--~~~~~~~~~~~i~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~d~ii~~s~~~~~ 170 (372)
T cd04949 98 TKPDVFILDRPTLDG--Q--ALLNMKKAAKVVVVLHSNHVSDNN--DPVHSLINNFYEYVFEN-LDKVDGVIVATEQQKQ 170 (372)
T ss_pred CCCCEEEECCccccc--h--hHHhccCCceEEEEEChHHhCCcc--cccccccchhhHHHHhC-hhhCCEEEEccHHHHH
Confidence 789999999873221 1 223333456788889975321100 00112223333333222 4789999999999999
Q ss_pred HHHHhhCCc--EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCC
Q 015058 180 ELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (414)
Q Consensus 180 ~l~~~~gi~--i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (414)
.+.+.++.. +.+|||+ +.+.+.+.+. .. .
T Consensus 171 ~l~~~~~~~~~v~~ip~g~~~~~~~~~~~-----------------------------------------------~~-~ 202 (372)
T cd04949 171 DLQKQFGNYNPIYTIPVGSIDPLKLPAQF-----------------------------------------------KQ-R 202 (372)
T ss_pred HHHHHhCCCCceEEEcccccChhhcccch-----------------------------------------------hh-c
Confidence 998887654 7899999 5443433210 01 1
Q ss_pred CCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHH
Q 015058 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (414)
Q Consensus 257 ~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~ 336 (414)
.+..++++||+.++||++.+++|+..+.+ ..|+++|+|+|.|+..+.+++.++
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~---------------------------~~~~~~l~i~G~g~~~~~~~~~~~ 255 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVK---------------------------QVPDATLDIYGYGDEEEKLKELIE 255 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHH---------------------------hCCCcEEEEEEeCchHHHHHHHHH
Confidence 22478999999999999999999999986 368999999999999999999999
Q ss_pred HcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC---------Ccccchhh
Q 015058 337 RLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC---------SVVGCLFV 405 (414)
Q Consensus 337 ~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~---------~~~~~~~~ 405 (414)
+++++ +|.|.| +.+++..+|+.||++|.++. .+++|++++|||++|+|||+++++ |.+|.++.
T Consensus 256 ~~~~~~~v~~~g---~~~~~~~~~~~ad~~v~~S~---~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~ 328 (372)
T cd04949 256 ELGLEDYVFLKG---YTRDLDEVYQKAQLSLLTSQ---SEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVP 328 (372)
T ss_pred HcCCcceEEEcC---CCCCHHHHHhhhhEEEeccc---ccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeC
Confidence 99998 999998 67899999999999997643 478999999999999999999876 45666654
No 67
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.89 E-value=3.1e-21 Score=195.14 Aligned_cols=302 Identities=17% Similarity=0.070 Sum_probs=182.2
Q ss_pred CCCCCEEEEEEeCCCC-CChHHHHHHHHHHhhCCCcEEEEecCCC--CCCcccccCCCeEEEEeecCCCCCCCCC-----
Q 015058 1 MGRRGRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS--KPHAAILEHPSIHIHTMTQWPTIPRGLP----- 72 (414)
Q Consensus 1 ~~~~~~~~v~~~~d~~-~~~r~~~~a~~La~~~g~eV~vv~~~~~--~~~~~~~~~~~i~i~~v~~~~~~~~~~~----- 72 (414)
|...+.+.++...+.+ ...|-|..+..|+++ |+.|..+...+- .+.. ...+..++..-. ....+...
T Consensus 1 ~~~~~~~~~~~~~~w~~~~~~~qhl~~~~a~~-~~~vl~v~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~ 75 (373)
T cd04950 1 MADRPDILVFSADDWDFLWQRPQHLAARLAER-GNRVLYVEPPGLSRTPQP--RGRDWVRVVLRL--RAALRRPRRLDPL 75 (373)
T ss_pred CCCCCeEEEecccCcCCCCCCHHHHHHHHHhC-CCeEEEEeCCCccCCCCC--CCcccEEeeecc--cccccCccccCcc
Confidence 3444455555444555 567888999999975 999999876542 2111 112222232111 00000000
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHH
Q 015058 73 KVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF 152 (414)
Q Consensus 73 ~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~ 152 (414)
-.+.........+.. .+.|.......+..++.+++| .+. .++..+.+.++|++.++..... .+..+.
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~P---~~~---~~~~~~~~~~~Vyd~~D~~~~~----~~~~~~- 142 (373)
T cd04950 76 IPARRRRLLRLLLNA--LLFWAQLELGFGRPILWYYTP---YTL---PVAALLQASLVVYDCVDDLSAF----PGGPPE- 142 (373)
T ss_pred ccchhhhHHHHHHHH--HHHHHHHhcCCCCcEEEEeCc---cHH---HHHhhcCCCeEEEEcccchhcc----CCCCHH-
Confidence 001111111111111 111211111244556666655 222 2223356789999988753211 111111
Q ss_pred HHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccC
Q 015058 153 VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSN 231 (414)
Q Consensus 153 ~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 231 (414)
..+.|+.+++.||.|+|+|+.+++.+.+. +.++.+|+|| |.+.|.+...... ..+ .+
T Consensus 143 ---~~~~e~~~~~~ad~vi~~S~~l~~~~~~~-~~~i~~i~ngvd~~~f~~~~~~~~-~~~-~~---------------- 200 (373)
T cd04950 143 ---LLEAERRLLKRADLVFTTSPSLYEAKRRL-NPNVVLVPNGVDYEHFAAARDPPP-PPA-DL---------------- 200 (373)
T ss_pred ---HHHHHHHHHHhCCEEEECCHHHHHHHhhC-CCCEEEcccccCHHHhhcccccCC-Chh-HH----------------
Confidence 12678899999999999999999988764 6669999999 7777765431100 000 00
Q ss_pred CCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCcc
Q 015058 232 GMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQ 311 (414)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
...+++ .++|+|++.+.++++.+.++++.
T Consensus 201 ---------------------~~~~~~-~i~y~G~l~~~~d~~ll~~la~~----------------------------- 229 (373)
T cd04950 201 ---------------------AALPRP-VIGYYGAIAEWLDLELLEALAKA----------------------------- 229 (373)
T ss_pred ---------------------hcCCCC-EEEEEeccccccCHHHHHHHHHH-----------------------------
Confidence 112344 89999999998888766554431
Q ss_pred CCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCC--CCCCCchhHHHHHHcCC
Q 015058 312 YLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVCYCWYSRY 389 (414)
Q Consensus 312 ~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~--~g~~lP~kl~Eama~G~ 389 (414)
.|+++|+|+|+|+...... +.....||+|+| +++.++++.+|+.||++++|.... ...++|+|++||||||+
T Consensus 230 --~p~~~~vliG~~~~~~~~~---~~~~~~nV~~~G-~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~ 303 (373)
T cd04950 230 --RPDWSFVLIGPVDVSIDPS---ALLRLPNVHYLG-PKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK 303 (373)
T ss_pred --CCCCEEEEECCCcCccChh---HhccCCCEEEeC-CCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC
Confidence 4789999999984333222 222356999997 999999999999999999875432 23468999999999999
Q ss_pred eEEEeeeCCc
Q 015058 390 SLKLLWTCSV 399 (414)
Q Consensus 390 Pvi~s~~~~~ 399 (414)
|||+++.+.+
T Consensus 304 PVVat~~~~~ 313 (373)
T cd04950 304 PVVATPLPEV 313 (373)
T ss_pred CEEecCcHHH
Confidence 9999886644
No 68
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.89 E-value=2.1e-21 Score=191.71 Aligned_cols=275 Identities=15% Similarity=0.067 Sum_probs=168.9
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHH
Q 015058 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l 85 (414)
++++++.+.-|.-.+....++.|.++ ||+|+++|..... .....+..++++++++ .....+.. ....+......+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~--~~~~~~~~-~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGL-EKRLVPKAGIEFYFIP--VGGLRRKG-SFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcc-hhcccccCCCceEEEe--ccCcCCCC-hHHHHHHHHHHH
Confidence 45555555422222233678888885 9999999864321 2222334688999887 32211111 111111111111
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhc
Q 015058 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (414)
Q Consensus 86 ~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k 165 (414)
..+.. +.++ .+..+||+||++++ ...+.+.++++..++|+|+..|+.. . .+.++++++
T Consensus 77 ~~~~~-l~~~-i~~~~pDvVi~~~~---~~~~~~~~~~~~~~~p~v~~~~~~~----------~-------~~~~~~~~~ 134 (348)
T TIGR01133 77 KAVFQ-ARRI-LKKFKPDAVIGFGG---YVSGPAGLAAKLLGIPLFHHEQNAV----------P-------GLTNKLLSR 134 (348)
T ss_pred HHHHH-HHHH-HHhcCCCEEEEcCC---cccHHHHHHHHHcCCCEEEECCCCC----------c-------cHHHHHHHH
Confidence 11111 1121 24479999999976 2334455667778899975433221 1 123567788
Q ss_pred cCCEEEEeCHHHHHHHHHhhCCcEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceee
Q 015058 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFT 244 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (414)
.+|.++++|+.+++++ +..+++|+ +...+.+.. . ++++
T Consensus 135 ~~d~ii~~~~~~~~~~------~~~~i~n~v~~~~~~~~~--~----~~~~----------------------------- 173 (348)
T TIGR01133 135 FAKKVLISFPGAKDHF------EAVLVGNPVRQEIRSLPV--P----RERF----------------------------- 173 (348)
T ss_pred HhCeeEECchhHhhcC------CceEEcCCcCHHHhcccc--h----hhhc-----------------------------
Confidence 9999999999988765 34688998 444333221 1 1111
Q ss_pred eccccccccCCCCCeEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEE-EEE
Q 015058 245 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IIT 322 (414)
Q Consensus 245 ~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~l-iI~ 322 (414)
+++++.+ +|+++|+....|++.. +++|++.+.+ +++++ +++
T Consensus 174 -------~~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~~~ 216 (348)
T TIGR01133 174 -------GLREGKP-TILVLGGSQGAKILNELVPKALAKLAE-----------------------------KGIQIVHQT 216 (348)
T ss_pred -------CCCCCCe-EEEEECCchhHHHHHHHHHHHHHHHhh-----------------------------cCcEEEEEC
Confidence 2444544 7888888777888765 4588877753 13444 456
Q ss_pred cCCCChHHHHHHHHHcCCCc-EEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 323 GKGPDKESYEEKIRRLRLKR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 323 G~G~~~e~l~~~i~~l~l~~-V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
|+|+ ++++++.++++++.+ |.|. .. |++.+|++||++|+. +| |++++|||++|+|+|+++..|
T Consensus 217 g~~~-~~~l~~~~~~~~l~~~v~~~----~~-~~~~~l~~ad~~v~~----~g---~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 217 GKND-LEKVKNVYQELGIEAIVTFI----DE-NMAAAYAAADLVISR----AG---ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred Ccch-HHHHHHHHhhCCceEEecCc----cc-CHHHHHHhCCEEEEC----CC---hhHHHHHHHcCCCEEEeeCCC
Confidence 6664 488999999999874 4443 23 999999999999952 22 789999999999999987754
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.88 E-value=1.5e-20 Score=192.72 Aligned_cols=216 Identities=15% Similarity=0.121 Sum_probs=150.5
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||++|++.....+. ...+++..++|+++..|..... ++ ..++.+.++++++++.+|.|+++|+.++
T Consensus 122 ~~~Pd~v~~~~~~~~~~---~l~~~~~~~ip~vl~~~~~~~~----s~----~~~~~~~~~~r~~~~~~d~ii~~S~~~~ 190 (425)
T PRK05749 122 FWRPKLVIIMETELWPN---LIAELKRRGIPLVLANARLSER----SF----KRYQKFKRFYRLLFKNIDLVLAQSEEDA 190 (425)
T ss_pred hhCCCEEEEEecchhHH---HHHHHHHCCCCEEEEeccCChh----hH----HHHHHHHHHHHHHHHhCCEEEECCHHHH
Confidence 37999999885532232 2223456789998865544210 01 1123345677888899999999999999
Q ss_pred HHHHHhhCCc--EEEecCCCCCCcCCCC-hHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 179 HELAQNWGIK--ATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 179 ~~l~~~~gi~--i~vI~n~~~~~f~p~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+.+. |.+ +.+++|.+.+.+.+.. .....++++++ + +
T Consensus 191 ~~l~~~-g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~------------------------------------~--~ 231 (425)
T PRK05749 191 ERFLAL-GAKNEVTVTGNLKFDIEVPPELAARAATLRRQL------------------------------------A--P 231 (425)
T ss_pred HHHHHc-CCCCCcEecccccccCCCChhhHHHHHHHHHHh------------------------------------c--C
Confidence 999874 754 6788887544443321 11223344332 1 2
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh-HHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEK 334 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~-e~l~~~ 334 (414)
+++ +++++|+. .|+.+.|++|++.+.+ .+|+++|+|+|+|+++ ++++++
T Consensus 232 ~~~-vil~~~~~--~~~~~~ll~A~~~l~~---------------------------~~~~~~liivG~g~~r~~~l~~~ 281 (425)
T PRK05749 232 NRP-VWIAASTH--EGEEELVLDAHRALLK---------------------------QFPNLLLILVPRHPERFKEVEEL 281 (425)
T ss_pred CCc-EEEEeCCC--chHHHHHHHHHHHHHH---------------------------hCCCcEEEEcCCChhhHHHHHHH
Confidence 444 66777764 6789999999998875 3689999999999987 799999
Q ss_pred HHHcCCCcEEEecCCC-----------ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 335 IRRLRLKRVAFRTMWL-----------SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 335 i~~l~l~~V~f~g~~v-----------~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
++++|++.+.|.++.. +.+|++.+|+.||+++++ ++..+++|..++||||||+|||++..
T Consensus 282 ~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~--~S~~e~~g~~~lEAma~G~PVI~g~~ 352 (425)
T PRK05749 282 LKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG--GSLVKRGGHNPLEPAAFGVPVISGPH 352 (425)
T ss_pred HHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC--CCcCCCCCCCHHHHHHhCCCEEECCC
Confidence 9999997666665322 246899999999996653 22234578889999999999999754
No 70
>PHA01630 putative group 1 glycosyl transferase
Probab=99.86 E-value=1.6e-20 Score=188.73 Aligned_cols=170 Identities=11% Similarity=0.093 Sum_probs=131.9
Q ss_pred cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHH-hccCCEEEEeCHHHHHHHHHhhCC----cEEEecCC-CCCC
Q 015058 126 RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY-GKMANGCLCVTQAMQHELAQNWGI----KATVLYDQ-PPEF 199 (414)
Q Consensus 126 ~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~-~k~ad~ii~vS~~~~~~l~~~~gi----~i~vI~n~-~~~~ 199 (414)
.|.|+++++|+.. ++.+.++.++ .+.||.++|+|+.+++.+.+. |+ ++.+|||| |++.
T Consensus 68 ~~~~~v~e~~~~~---------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~-g~~~~~~i~vIpNGVd~~~ 131 (331)
T PHA01630 68 VGKNIVFEVADTD---------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTS-GLKIPQPIYVIPHNLNPRM 131 (331)
T ss_pred cCCceEEEEEeec---------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHc-CCCCCCCEEEECCCCCHHH
Confidence 4779999998832 1333455667 789999999999999998765 43 48899999 7777
Q ss_pred cCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHH
Q 015058 200 FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEA 279 (414)
Q Consensus 200 f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA 279 (414)
|.|...+ .+.+.+++++|++.++||++.||+|
T Consensus 132 f~~~~~~------------------------------------------------~~~~~vl~~~g~~~~~Kg~d~Li~A 163 (331)
T PHA01630 132 FEYKPKE------------------------------------------------KPHPCVLAILPHSWDRKGGDIVVKI 163 (331)
T ss_pred cCCCccc------------------------------------------------cCCCEEEEEeccccccCCHHHHHHH
Confidence 7654210 0123577889999999999999999
Q ss_pred HHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHH
Q 015058 280 ALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL 359 (414)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l 359 (414)
++.+.++ .++++|+|+|+|+...++ .++.. +.| .++.++++.+|
T Consensus 164 ~~~l~~~---------------------------~~~~~llivG~~~~~~~l------~~~~~--~~~-~v~~~~l~~~y 207 (331)
T PHA01630 164 FHELQNE---------------------------GYDFYFLIKSSNMLDPRL------FGLNG--VKT-PLPDDDIYSLF 207 (331)
T ss_pred HHHHHhh---------------------------CCCEEEEEEeCcccchhh------ccccc--eec-cCCHHHHHHHH
Confidence 9998762 578999999988764432 13332 233 57999999999
Q ss_pred hhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 360 GSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 360 ~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++||++|+|+. .+++|++++||||||+|||+|+++|
T Consensus 208 ~~aDv~v~pS~---~E~fgl~~lEAMA~G~PVIas~~gg 243 (331)
T PHA01630 208 AGCDILFYPVR---GGAFEIPVIEALALGLDVVVTEKGA 243 (331)
T ss_pred HhCCEEEECCc---cccCChHHHHHHHcCCCEEEeCCCC
Confidence 99999998743 4789999999999999999999887
No 71
>PHA01633 putative glycosyl transferase group 1
Probab=99.84 E-value=2.4e-19 Score=180.66 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=143.6
Q ss_pred EEeCCCCchHHHHHHHHHhhc-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHHHh
Q 015058 106 LVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQN 184 (414)
Q Consensus 106 h~~~pp~~~~~~~~~la~~~~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~ 184 (414)
.-.+||++..++.+. .+++ +.+++.++|+..- . .++.+++.+ .+.+||+|+.+++.+++.
T Consensus 50 ~~~~~~~~~~~~~~~--~~~~~~~~~~tt~~g~~~-~---------------~~y~~~m~~-~~~vIavS~~t~~~L~~~ 110 (335)
T PHA01633 50 IPFHPPSLNPYLYAY--YQFKGKKYFYTTCDGIPN-I---------------EIVNKYLLQ-DVKFIPNSKFSAENLQEV 110 (335)
T ss_pred eecCCcccchHHhhh--hhhcCCCceEEeeCCcCc-h---------------HHHHHHHhc-CCEEEeCCHHHHHHHHHh
Confidence 344677666555442 3344 5678889998631 0 234456655 558899999999999875
Q ss_pred hCCc-EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEE
Q 015058 185 WGIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVV 262 (414)
Q Consensus 185 ~gi~-i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 262 (414)
|++ ..+|++| |.+.|.|... ...+++++++.. . ++. .+++
T Consensus 111 -G~~~~i~I~~GVD~~~f~p~~~-~~~~~r~~~~~~----------------------------------~-~~~-~~i~ 152 (335)
T PHA01633 111 -GLQVDLPVFHGINFKIVENAEK-LVPQLKQKLDKD----------------------------------F-PDT-IKFG 152 (335)
T ss_pred -CCCCceeeeCCCChhhcCccch-hhHHHHHHhCcC----------------------------------C-CCC-eEEE
Confidence 765 2346778 8888877531 223455554311 1 233 4889
Q ss_pred EeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCC----cEEEEEEcCCCChHHHHHHHHHc
Q 015058 263 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKGPDKESYEEKIRRL 338 (414)
Q Consensus 263 ~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~i~liI~G~G~~~e~l~~~i~~l 338 (414)
++||++++||++.|++|++.+.++ +| +++++++|++ ..+++
T Consensus 153 ~vGRl~~~KG~~~LI~A~~~L~~~---------------------------~p~~~~~i~l~ivG~~--------~~~~l 197 (335)
T PHA01633 153 IVSGLTKRKNMDLMLQVFNELNTK---------------------------YPDIAKKIHFFVISHK--------QFTQL 197 (335)
T ss_pred EEeCCccccCHHHHHHHHHHHHHh---------------------------CCCccccEEEEEEcHH--------HHHHc
Confidence 999999999999999999998763 33 4688888742 34567
Q ss_pred CCC-cEEEec--CCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 339 RLK-RVAFRT--MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 339 ~l~-~V~f~g--~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++. +|+|.| ++++++|++.+|++||++|+|+. .|++|+.++||||||+|||+++.+|
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~---~EgfGlvlLEAMA~G~PVVas~~~~ 257 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG---TEGFGMPVLESMAMGTPVIHQLMPP 257 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc---cccCCHHHHHHHHcCCCEEEccCCC
Confidence 887 999995 37789999999999999998743 5889999999999999999997764
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=9.3e-19 Score=176.58 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=134.3
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
+..+||+||++.|. ..+......+..++|++...+++.. . .+|+++.+|.++++|+.+
T Consensus 101 ~~~~pD~Vi~~~~~---~~~~~~~~~~~~~ip~~~~~td~~~---------~----------~~~~~~~ad~i~~~s~~~ 158 (380)
T PRK13609 101 QAEKPDIVINTFPI---IAVPELKKQTGISIPTYNVLTDFCL---------H----------KIWVHREVDRYFVATDHV 158 (380)
T ss_pred HHhCcCEEEEcChH---HHHHHHHHhcCCCCCeEEEeCCCCC---------C----------cccccCCCCEEEECCHHH
Confidence 34799999998762 2222222233457887754444321 1 125568999999999999
Q ss_pred HHHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 178 QHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 178 ~~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
++.+.+. |++ +.++.+...+.|.+.. .+..+++++ +++
T Consensus 159 ~~~l~~~-gi~~~ki~v~G~p~~~~f~~~~--~~~~~~~~~------------------------------------~l~ 199 (380)
T PRK13609 159 KKVLVDI-GVPPEQVVETGIPIRSSFELKI--NPDIIYNKY------------------------------------QLC 199 (380)
T ss_pred HHHHHHc-CCChhHEEEECcccChHHcCcC--CHHHHHHHc------------------------------------CCC
Confidence 9999874 774 6666444223343322 123345443 355
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEE-cCC-CChHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKG-PDKESYE 332 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~-G~G-~~~e~l~ 332 (414)
++++.++++.|++...|+++.+++++.. .++++++++ |++ +.+++++
T Consensus 200 ~~~~~il~~~G~~~~~k~~~~li~~l~~-------------------------------~~~~~~viv~G~~~~~~~~l~ 248 (380)
T PRK13609 200 PNKKILLIMAGAHGVLGNVKELCQSLMS-------------------------------VPDLQVVVVCGKNEALKQSLE 248 (380)
T ss_pred CCCcEEEEEcCCCCCCcCHHHHHHHHhh-------------------------------CCCcEEEEEeCCCHHHHHHHH
Confidence 5666677888999999999998888642 357888765 544 4678888
Q ss_pred HHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 333 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 333 ~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+++++++ .+|+|+| + .++++.+|++||++|+ . + -|+.++|||+||+|||+++.
T Consensus 249 ~~~~~~~-~~v~~~g-~--~~~~~~l~~~aD~~v~--~-~----gg~t~~EA~a~g~PvI~~~~ 301 (380)
T PRK13609 249 DLQETNP-DALKVFG-Y--VENIDELFRVTSCMIT--K-P----GGITLSEAAALGVPVILYKP 301 (380)
T ss_pred HHHhcCC-CcEEEEe-c--hhhHHHHHHhccEEEe--C-C----CchHHHHHHHhCCCEEECCC
Confidence 8887766 5899998 5 4689999999999984 1 1 26688999999999999863
No 73
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.81 E-value=2.7e-18 Score=182.11 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=161.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHH-hhcCCeEEEEEcCcchhhhhhcc-CCCcHHH-----------------HHHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSL-GRRSHFV-----------------SIYRWIE 160 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~-~~~~~~~Iv~~H~~~~~l~~~~~-~~~~~~~-----------------~i~~~~E 160 (414)
.++||+|+|.+ .++.++..++ +..++|+|.|.|.... ...+ +....+. .-..++|
T Consensus 147 ~~~dViH~HeW---m~g~a~~~lK~~~~~VptVfTtHAT~~---GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE 220 (590)
T cd03793 147 EPAVVAHFHEW---QAGVGLPLLRKRKVDVSTIFTTHATLL---GRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIE 220 (590)
T ss_pred CCCeEEEEcch---hHhHHHHHHHHhCCCCCEEEEeccccc---ccccccCCcccchhhhhcchhhhhhcccchHHHHHH
Confidence 68999999998 6666666666 4468899999997532 1100 0000011 1223589
Q ss_pred HHHhccCCEEEEeCHHHHHHHHHhhCCc-EEEecCC-CCCCcCCCChH-HHH-HHHHHhhhhccCCCCccccccCCCCCC
Q 015058 161 KYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLE-EKH-ELFCRLNKILHQPLGVQDCVSNGMEGQ 236 (414)
Q Consensus 161 k~~~k~ad~ii~vS~~~~~~l~~~~gi~-i~vI~n~-~~~~f~p~~~~-~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (414)
++....||.+++||+.+++++...++.+ -.||||| +++.|.+.... .++ ..++++..- +
T Consensus 221 ~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f----------~------- 283 (590)
T cd03793 221 RAAAHCAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKKFSALHEFQNLHAQSKEKINEF----------V------- 283 (590)
T ss_pred HHHHhhCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhhcccchhhhhhhHHhhhhhhHH----------H-------
Confidence 9999999999999999999999988987 3499999 88888665321 111 222222100 0
Q ss_pred CCccceeeeccccccccCCCCCeEEEEeccCCC-CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCC
Q 015058 237 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 315 (414)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~-~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (414)
...| .+..+++++++++++++||+.. +||++.||+|+.++.... ..+.| | ..
T Consensus 284 ---~~~~----~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l----~~~~~-----------~-----~t 336 (590)
T cd03793 284 ---RGHF----YGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLL----KVEGS-----------D-----TT 336 (590)
T ss_pred ---HHHH----hhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHH----HhcCC-----------C-----Ce
Confidence 0001 2334566677633344899999 999999999999987642 11111 0 01
Q ss_pred cEEEEEEcCC----------------------------------------------------------------------
Q 015058 316 RLLFIITGKG---------------------------------------------------------------------- 325 (414)
Q Consensus 316 ~i~liI~G~G---------------------------------------------------------------------- 325 (414)
-+-|+|+-.+
T Consensus 337 Vvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~ 416 (590)
T cd03793 337 VVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLP 416 (590)
T ss_pred EEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCC
Confidence 1222222111
Q ss_pred ---------CChHHHHHHHHHcCCC-------cEEEecCCCC------hhhHHHHHhhccEEEeeccCCCCCCCchhHHH
Q 015058 326 ---------PDKESYEEKIRRLRLK-------RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY 383 (414)
Q Consensus 326 ---------~~~e~l~~~i~~l~l~-------~V~f~g~~v~------~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E 383 (414)
...+.+-..+++++|- .|+|...+++ ..++.++++.||+||+|+. .|+++..++|
T Consensus 417 p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~---yE~fG~~~lE 493 (590)
T cd03793 417 PVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSY---YEPWGYTPAE 493 (590)
T ss_pred CeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccc---cCCCCcHHHH
Confidence 1223455566666662 4677755544 4469999999999998743 4788999999
Q ss_pred HHHcCCeEEEeeeCCc
Q 015058 384 CWYSRYSLKLLWTCSV 399 (414)
Q Consensus 384 ama~G~Pvi~s~~~~~ 399 (414)
|||||+|||+|+.+|.
T Consensus 494 Ama~G~PvI~t~~~gf 509 (590)
T cd03793 494 CTVMGIPSITTNLSGF 509 (590)
T ss_pred HHHcCCCEEEccCcch
Confidence 9999999999999876
No 74
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.78 E-value=9.3e-18 Score=167.80 Aligned_cols=195 Identities=12% Similarity=0.119 Sum_probs=129.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh--cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~--~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
.+-|+||+|+|+.....+...++.++ .++|+|+++|+..+ .. ...... .++.|+++++.||.++|+|+.|
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~-~~---~~~~~~----~~~~~~~~~~~aD~iI~~S~~~ 134 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEP-LR---FDSNYY----LMKEEIDMLNLADVLIVHSKKM 134 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHH-Hh---ccccch----hhHHHHHHHHhCCEEEECCHHH
Confidence 34499999998644322222222222 37999999999743 11 111111 2466888999999999999999
Q ss_pred HHHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccC
Q 015058 178 QHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK 254 (414)
Q Consensus 178 ~~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 254 (414)
+++++++ |.+ +.++++++.... .. .+ . .+
T Consensus 135 ~~~l~~~-g~~~~~i~~~~~~~~~~~--~~------~~-~--------------------------------------~~ 166 (333)
T PRK09814 135 KDRLVEE-GLTTDKIIVQGIFDYLND--IE------LV-K--------------------------------------TP 166 (333)
T ss_pred HHHHHHc-CCCcCceEeccccccccc--cc------cc-c--------------------------------------cc
Confidence 9999875 763 666666642110 00 00 0 01
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 334 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~ 334 (414)
.++ ..|+|+|++.+.++ +.+ ..++++|+|+|+|++++
T Consensus 167 ~~~-~~i~yaG~l~k~~~----------l~~---------------------------~~~~~~l~i~G~g~~~~----- 203 (333)
T PRK09814 167 SFQ-KKINFAGNLEKSPF----------LKN---------------------------WSQGIKLTVFGPNPEDL----- 203 (333)
T ss_pred cCC-ceEEEecChhhchH----------HHh---------------------------cCCCCeEEEECCCcccc-----
Confidence 122 38999999984321 111 13578999999999765
Q ss_pred HHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccC----C----CCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 335 IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS----S----SGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 335 i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s----~----~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
....+|+|.| +++.++++.+|+. |+++++... . ....+|+|+.+|||||+|||+++.++
T Consensus 204 ---~~~~~V~f~G-~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~ 270 (333)
T PRK09814 204 ---ENSANISYKG-WFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAA 270 (333)
T ss_pred ---ccCCCeEEec-CCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCcc
Confidence 1234999997 9999999999998 777644221 0 12458999999999999999987654
No 75
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.77 E-value=1.2e-17 Score=174.58 Aligned_cols=222 Identities=13% Similarity=0.011 Sum_probs=145.1
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
...|+|++|++ ..++++.++++. .+.|+++.+|-..++.. + +..-..-..+. +.+ -.+|.|...+....
T Consensus 130 ~~~d~iwihDy---hl~llp~~lr~~~~~~~i~~f~HipfP~~e-~-~~~lp~~~~ll----~~~-l~~D~igF~t~~~~ 199 (460)
T cd03788 130 RPGDLVWVHDY---HLLLLPQMLRERGPDARIGFFLHIPFPSSE-I-FRCLPWREELL----RGL-LGADLIGFQTERYA 199 (460)
T ss_pred CCCCEEEEeCh---hhhHHHHHHHhhCCCCeEEEEEeCCCCChH-H-HhhCCChHHHH----HHH-hcCCEEEECCHHHH
Confidence 46799999998 445555555543 35788878885321110 0 10000001122 222 24899988887655
Q ss_pred HHHHHh-----------------hCC--cEEEecCC-CCCCcCCCC--hHHHHHHHHHhhhhccCCCCccccccCCCCCC
Q 015058 179 HELAQN-----------------WGI--KATVLYDQ-PPEFFHPTS--LEEKHELFCRLNKILHQPLGVQDCVSNGMEGQ 236 (414)
Q Consensus 179 ~~l~~~-----------------~gi--~i~vI~n~-~~~~f~p~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (414)
..+.+. .|. ++.++||| |++.|.+.. .+.+..+++..
T Consensus 200 ~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~--------------------- 258 (460)
T cd03788 200 RNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELR--------------------- 258 (460)
T ss_pred HHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHH---------------------
Confidence 443331 122 27889999 888886542 11222222111
Q ss_pred CCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCc
Q 015058 237 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 316 (414)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (414)
+..+++ .+|+++||+.+.||++.+++|++.+.++ +|+
T Consensus 259 ---------------~~~~~~-~~il~vgRl~~~Kgi~~ll~A~~~ll~~---------------------------~p~ 295 (460)
T cd03788 259 ---------------ERLGGR-KLIVGVDRLDYSKGIPERLLAFERLLER---------------------------YPE 295 (460)
T ss_pred ---------------HhcCCC-EEEEEecCccccCCHHHHHHHHHHHHHh---------------------------Chh
Confidence 122345 4899999999999999999999988763 454
Q ss_pred ----EEEEEEcC-----CCChHHHHHHHHHc----C-------CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCC
Q 015058 317 ----LLFIITGK-----GPDKESYEEKIRRL----R-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD 376 (414)
Q Consensus 317 ----i~liI~G~-----G~~~e~l~~~i~~l----~-------l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~ 376 (414)
+.|+++|. |++.+++++.++++ + ...|.|+++.++.++++.+|++||++|+++ ..++
T Consensus 296 ~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS---~~Eg 372 (460)
T cd03788 296 WRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTP---LRDG 372 (460)
T ss_pred hcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCc---cccc
Confidence 67888853 45555565555543 2 235777766899999999999999999764 3578
Q ss_pred CchhHHHHHHcCCe----EEEeeeCC
Q 015058 377 LPMKVCYCWYSRYS----LKLLWTCS 398 (414)
Q Consensus 377 lP~kl~Eama~G~P----vi~s~~~~ 398 (414)
+|.+++||||||+| ||+|+.+|
T Consensus 373 ~~lv~lEAma~g~p~~g~vV~S~~~G 398 (460)
T cd03788 373 MNLVAKEYVACQDDDPGVLILSEFAG 398 (460)
T ss_pred cCcccceeEEEecCCCceEEEecccc
Confidence 99999999999999 99998776
No 76
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.76 E-value=5.2e-17 Score=161.58 Aligned_cols=281 Identities=14% Similarity=0.005 Sum_probs=175.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEecCCCC-C-C-ccccc---CCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHH
Q 015058 15 LGRSPRMQYQALSLARQMSLEVDVVAYGGSK-P-H-AAILE---HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (414)
Q Consensus 15 ~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~-~-~-~~~~~---~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~ 88 (414)
-.....+.-....|.++.++++.++..+... + . ....+ ..+.++ .+. ... . .+.........+.++
T Consensus 9 r~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~-~l~--~~~---~--~~~~~~~~~~~~~~l 80 (363)
T cd03786 9 RPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDY-DLL--LGS---D--SQSLGAQTAGLLIGL 80 (363)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCE-EEe--cCC---C--CCCHHHHHHHHHHHH
Confidence 3444566677788887558999987766432 1 1 11111 112222 333 110 0 011111112222222
Q ss_pred HHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCC
Q 015058 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN 168 (414)
Q Consensus 89 ~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad 168 (414)
... ++ ..+||+||+|... ...+++.++++..++|++...|+.. + +....... +..+++.+.+|
T Consensus 81 ~~~----l~-~~~pDvV~~~g~~--~~~~~~~~aa~~~~iPvv~~~~g~~-s-----~~~~~~~~----~~r~~~~~~ad 143 (363)
T cd03786 81 EAV----LL-EEKPDLVLVLGDT--NETLAAALAAFKLGIPVAHVEAGLR-S-----FDRGMPDE----ENRHAIDKLSD 143 (363)
T ss_pred HHH----HH-HhCCCEEEEeCCc--hHHHHHHHHHHHcCCCEEEEecccc-c-----CCCCCCch----HHHHHHHHHhh
Confidence 211 22 3699999999642 3445566777778999887666531 1 10111111 11234567899
Q ss_pred EEEEeCHHHHHHHHHhhCCc---EEEecCC--CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCcccee
Q 015058 169 GCLCVTQAMQHELAQNWGIK---ATVLYDQ--PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIF 243 (414)
Q Consensus 169 ~ii~vS~~~~~~l~~~~gi~---i~vI~n~--~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (414)
.++|.|+..++.+.+. |++ +.+++|+ |...+.+.. ......+++
T Consensus 144 ~~~~~s~~~~~~l~~~-G~~~~kI~vign~v~d~~~~~~~~-~~~~~~~~~----------------------------- 192 (363)
T cd03786 144 LHFAPTEEARRNLLQE-GEPPERIFVVGNTMIDALLRLLEL-AKKELILEL----------------------------- 192 (363)
T ss_pred hccCCCHHHHHHHHHc-CCCcccEEEECchHHHHHHHHHHh-hccchhhhh-----------------------------
Confidence 9999999999999865 776 7788887 322221110 000001111
Q ss_pred eeccccccccCCCCCeEEEEeccCCC---CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEE
Q 015058 244 TSLAGIDVFLKPNRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 320 (414)
Q Consensus 244 ~~~~~~~~~l~~~~~~~i~~vgrl~~---~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~li 320 (414)
.+++ +.+.++++.||.+. .|+++.+++|++.+.+ . ++.++
T Consensus 193 -------~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~----------------------------~-~~~vi 235 (363)
T cd03786 193 -------LGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAE----------------------------E-DVPVV 235 (363)
T ss_pred -------cccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHh----------------------------c-CCEEE
Confidence 1333 34467889999885 7999999999988753 1 57888
Q ss_pred EEcCCCChHHHHHHHHHcCC--CcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 321 ITGKGPDKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 321 I~G~G~~~e~l~~~i~~l~l--~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+.|.|+.++.+++.++++++ .+|+|.| ..+.++++.+|++||++|+++ + + .+.|||++|+|+|++...
T Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~ad~~v~~S----g-g---i~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 236 FPNHPRTRPRIREAGLEFLGHHPNVLLIS-PLGYLYFLLLLKNADLVLTDS----G-G---IQEEASFLGVPVLNLRDR 305 (363)
T ss_pred EECCCChHHHHHHHHHhhccCCCCEEEEC-CcCHHHHHHHHHcCcEEEEcC----c-c---HHhhhhhcCCCEEeeCCC
Confidence 88999989999999999887 4999997 678899999999999999642 2 2 368999999999998643
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=1.2e-16 Score=144.55 Aligned_cols=106 Identities=26% Similarity=0.270 Sum_probs=91.7
Q ss_pred EeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCC-
Q 015058 263 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLK- 341 (414)
Q Consensus 263 ~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~- 341 (414)
++|++.+.||++.+++|+..+.++ .|+++|+|+|.++..+..++.+.+++..
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~---------------------------~~~~~~~i~G~~~~~~~~~~~~~~~~~~~ 161 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKER---------------------------GPDLKLVIAGDGPEREYLEELLAALLLLD 161 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCCChHHHHHHHHhcCCcc
Confidence 889999999999999999999763 5789999999999988877767788877
Q ss_pred cEEEecCCC-ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 342 RVAFRTMWL-SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 342 ~V~f~g~~v-~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
+|.+.| ++ +.+++..++++||++++++. .+++|++++|||++|+|+|+|+.++.
T Consensus 162 ~v~~~~-~~~~~~~~~~~~~~~di~l~~~~---~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 162 RVIFLG-GLDPEELLALLLAAADVFVLPSL---REGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cEEEeC-CCCcHHHHHHHhhcCCEEEeccc---ccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 999998 55 67788888888999997643 34789999999999999999998765
No 78
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.76 E-value=2.8e-17 Score=172.01 Aligned_cols=220 Identities=12% Similarity=0.040 Sum_probs=149.9
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhc-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..-|+|.+|+. ..++++.+++... ..++.+-+|-..++. .+ +..-..-..+. +.+ -.||.|...++..+
T Consensus 126 ~~~d~vwvhDY---hl~l~p~~lr~~~~~~~igfFlHipfP~~-e~-f~~lp~r~~il----~gl-l~~dligF~t~~~~ 195 (456)
T TIGR02400 126 QPGDIVWVHDY---HLMLLPAMLRELGVQNKIGFFLHIPFPSS-EI-YRTLPWRRELL----EGL-LAYDLVGFQTYDDA 195 (456)
T ss_pred CCCCEEEEecc---hhhHHHHHHHhhCCCCeEEEEEeCCCCCh-HH-HhhCCcHHHHH----HHH-hcCCEEEECCHHHH
Confidence 34579999987 5556666666654 446666677531111 00 10000001121 222 37999999999888
Q ss_pred HHHHHh----hC------------C--cEEEecCC-CCCCcCCCCh--HH---HHHHHHHhhhhccCCCCccccccCCCC
Q 015058 179 HELAQN----WG------------I--KATVLYDQ-PPEFFHPTSL--EE---KHELFCRLNKILHQPLGVQDCVSNGME 234 (414)
Q Consensus 179 ~~l~~~----~g------------i--~i~vI~n~-~~~~f~p~~~--~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (414)
+.+.+. .| . ++.++||| |++.|.|... +. ..++++++
T Consensus 196 ~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~------------------- 256 (456)
T TIGR02400 196 RNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL------------------- 256 (456)
T ss_pred HHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc-------------------
Confidence 765531 12 1 27789999 8888876421 11 11233221
Q ss_pred CCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCC
Q 015058 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (414)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
+++ .+|+++||+++.||++.+++|++.+.++ +
T Consensus 257 --------------------~~~-~vIl~VgRLd~~KGi~~ll~A~~~ll~~---------------------------~ 288 (456)
T TIGR02400 257 --------------------KGR-KLIIGVDRLDYSKGLPERLLAFERFLEE---------------------------H 288 (456)
T ss_pred --------------------CCC-eEEEEccccccccCHHHHHHHHHHHHHh---------------------------C
Confidence 134 3899999999999999999999998753 4
Q ss_pred Cc----EEEEEE-----cCCCChHHHHHHHHHc--------C-C--CcEEEecCCCChhhHHHHHhhccEEEeeccCCCC
Q 015058 315 PR----LLFIIT-----GKGPDKESYEEKIRRL--------R-L--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (414)
Q Consensus 315 p~----i~liI~-----G~G~~~e~l~~~i~~l--------~-l--~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g 374 (414)
|+ +.|+++ |+|++.+++++.++++ + + ..|.++++.++.++++.+|++||++|+++ ..
T Consensus 289 p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S---~~ 365 (456)
T TIGR02400 289 PEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTP---LR 365 (456)
T ss_pred ccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECc---cc
Confidence 54 567766 5677878888888776 1 1 13667777899999999999999999753 35
Q ss_pred CCCchhHHHHHHcCCe----EEEeeeCCc
Q 015058 375 LDLPMKVCYCWYSRYS----LKLLWTCSV 399 (414)
Q Consensus 375 ~~lP~kl~Eama~G~P----vi~s~~~~~ 399 (414)
+|+|.+++||||||+| +|+|+.+|.
T Consensus 366 EG~~Lv~lEamA~g~P~~g~vVlS~~~G~ 394 (456)
T TIGR02400 366 DGMNLVAKEYVAAQDPKDGVLILSEFAGA 394 (456)
T ss_pred cccCccHHHHHHhcCCCCceEEEeCCCCC
Confidence 7899999999999999 999998885
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.76 E-value=6.9e-17 Score=164.14 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=135.2
Q ss_pred cCCCcEEEEeCCCCc--hHHHHHHHHH-hhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCH
Q 015058 99 IASPDVFLVQNPPSV--PTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~--~~~~~~~la~-~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~ 175 (414)
..+||+||++.|... +..++..+.. ...++|+++...++.. .. ..|+++.+|.++++|+
T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~--------~~----------~~w~~~~~d~~~~~s~ 159 (382)
T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGT--------CH----------PTWFHKGVTRCFCPSE 159 (382)
T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCC--------cC----------cccccCCCCEEEECCH
Confidence 479999999765211 1212221111 1247888877666521 00 1355689999999999
Q ss_pred HHHHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 176 AMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 176 ~~~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
.+++.+.+. |++ +.+++++ +++++.+.. .+.++++++
T Consensus 160 ~~~~~l~~~-g~~~~ki~v~g~~v~~~f~~~~~--~~~~~r~~~------------------------------------ 200 (382)
T PLN02605 160 EVAKRALKR-GLEPSQIRVYGLPIRPSFARAVR--PKDELRREL------------------------------------ 200 (382)
T ss_pred HHHHHHHHc-CCCHHHEEEECcccCHhhccCCC--CHHHHHHHc------------------------------------
Confidence 999998875 775 7777766 444333332 345566554
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEE-EEEEcCCCC-hH
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPD-KE 329 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-liI~G~G~~-~e 329 (414)
+++++++ +|+++|+....|++..+++++....... + ...++.+ ++|+|+|+. ++
T Consensus 201 gl~~~~~-~il~~Gg~~g~~~~~~li~~l~~~~~~~----------------------~-~~~~~~~~~vi~G~~~~~~~ 256 (382)
T PLN02605 201 GMDEDLP-AVLLMGGGEGMGPLEETARALGDSLYDK----------------------N-LGKPIGQVVVICGRNKKLQS 256 (382)
T ss_pred CCCCCCc-EEEEECCCcccccHHHHHHHHHHhhccc----------------------c-ccCCCceEEEEECCCHHHHH
Confidence 4556665 8889999999999999999987542100 0 0124554 678898853 44
Q ss_pred HHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 330 SYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 330 ~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
++++. ... +|+|+| + .+|++.+|++||++|+. +| |+++.||||||+|+|+++.
T Consensus 257 ~L~~~----~~~~~v~~~G-~--~~~~~~l~~aaDv~V~~----~g---~~ti~EAma~g~PvI~~~~ 310 (382)
T PLN02605 257 KLESR----DWKIPVKVRG-F--VTNMEEWMGACDCIITK----AG---PGTIAEALIRGLPIILNGY 310 (382)
T ss_pred HHHhh----cccCCeEEEe-c--cccHHHHHHhCCEEEEC----CC---cchHHHHHHcCCCEEEecC
Confidence 44433 334 799998 5 46899999999999952 12 6789999999999999983
No 80
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.72 E-value=7.6e-16 Score=154.83 Aligned_cols=201 Identities=16% Similarity=0.114 Sum_probs=129.8
Q ss_pred hcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
+..+||+||++..++.+..+ +.. .+..|+|+++..|+..+. + ... +. +.+.+.+|.+++.|+..
T Consensus 82 ~~~kPdivi~~~~~~~~~~~-a~~-a~~~~ip~i~~~~~~~~~-----~-~~~---~~-----~~~~~~~d~i~~~~~~~ 145 (380)
T PRK00025 82 LAEPPDVFIGIDAPDFNLRL-EKK-LRKAGIPTIHYVSPSVWA-----W-RQG---RA-----FKIAKATDHVLALFPFE 145 (380)
T ss_pred HHcCCCEEEEeCCCCCCHHH-HHH-HHHCCCCEEEEeCCchhh-----c-Cch---HH-----HHHHHHHhhheeCCccC
Confidence 34799999998754333322 222 344689998766553220 0 011 11 12357889999999999
Q ss_pred HHHHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCC
Q 015058 178 QHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (414)
Q Consensus 178 ~~~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (414)
++.+.+ .|.++.++.|.-.+.+.+.. ++.+.++++ ++++++
T Consensus 146 ~~~~~~-~g~~~~~~G~p~~~~~~~~~--~~~~~~~~l------------------------------------~~~~~~ 186 (380)
T PRK00025 146 AAFYDK-LGVPVTFVGHPLADAIPLLP--DRAAARARL------------------------------------GLDPDA 186 (380)
T ss_pred HHHHHh-cCCCeEEECcCHHHhccccc--ChHHHHHHc------------------------------------CCCCCC
Confidence 988876 47775555444112121111 233444443 344556
Q ss_pred CeEEEEecc-CCCC-CChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC-CCChHHHHHH
Q 015058 258 PALVVSSTS-WTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GPDKESYEEK 334 (414)
Q Consensus 258 ~~~i~~vgr-l~~~-Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-G~~~e~l~~~ 334 (414)
+.++++.|+ ..+. +.++.+++|++.+.+ .+|+++++++|. |+.++++++.
T Consensus 187 ~~il~~~gsr~~~~~~~~~~l~~a~~~l~~---------------------------~~~~~~~ii~~~~~~~~~~~~~~ 239 (380)
T PRK00025 187 RVLALLPGSRGQEIKRLLPPFLKAAQLLQQ---------------------------RYPDLRFVLPLVNPKRREQIEEA 239 (380)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHH---------------------------hCCCeEEEEecCChhhHHHHHHH
Confidence 544555553 3333 447899999998875 267899999876 6677888888
Q ss_pred HHHc-CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 335 IRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 335 i~~l-~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
++++ ++. +.+. .++++.+|++||++|+++ |...+|||++|+|+|++
T Consensus 240 ~~~~~~~~-v~~~-----~~~~~~~~~~aDl~v~~s--------G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 240 LAEYAGLE-VTLL-----DGQKREAMAAADAALAAS--------GTVTLELALLKVPMVVG 286 (380)
T ss_pred HhhcCCCC-eEEE-----cccHHHHHHhCCEEEECc--------cHHHHHHHHhCCCEEEE
Confidence 8887 665 5554 358999999999999742 34678999999999987
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=1.1e-15 Score=156.13 Aligned_cols=194 Identities=12% Similarity=0.185 Sum_probs=129.2
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||++.|. + .+.....++..++|++....++.. .+ +|+++.+|.+++.|+.++
T Consensus 102 ~~kPDvVi~~~p~--~-~~~~l~~~~~~~iP~~~v~td~~~---------~~----------~w~~~~~d~~~v~s~~~~ 159 (391)
T PRK13608 102 KEKPDLILLTFPT--P-VMSVLTEQFNINIPVATVMTDYRL---------HK----------NWITPYSTRYYVATKETK 159 (391)
T ss_pred HhCcCEEEECCcH--H-HHHHHHHhcCCCCCEEEEeCCCCc---------cc----------ccccCCCCEEEECCHHHH
Confidence 4799999998762 2 222122233457898654444310 11 245689999999999999
Q ss_pred HHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
+.+.+. |++ +.++.|...+.|.+.. .+.+.++++ ++++
T Consensus 160 ~~l~~~-gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~~~------------------------------------~l~~ 200 (391)
T PRK13608 160 QDFIDV-GIDPSTVKVTGIPIDNKFETPI--DQKQWLIDN------------------------------------NLDP 200 (391)
T ss_pred HHHHHc-CCCHHHEEEECeecChHhcccc--cHHHHHHHc------------------------------------CCCC
Confidence 999875 875 6666555334454322 223444343 3556
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEE-cCCC-ChHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP-DKESYEE 333 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~-G~G~-~~e~l~~ 333 (414)
+++.+++++|++...||++.+++++. . ..++++++++ |+++ .+++++
T Consensus 201 ~~~~ilv~~G~lg~~k~~~~li~~~~--~----------------------------~~~~~~~vvv~G~~~~l~~~l~- 249 (391)
T PRK13608 201 DKQTILMSAGAFGVSKGFDTMITDIL--A----------------------------KSANAQVVMICGKSKELKRSLT- 249 (391)
T ss_pred CCCEEEEECCCcccchhHHHHHHHHH--h----------------------------cCCCceEEEEcCCCHHHHHHHH-
Confidence 66667889999999999999999853 1 1356888654 5553 223343
Q ss_pred HHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 334 KIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 334 ~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+..+.. +|.|+| + .++++.+|++||++|+. + .|..+.|||++|+|+|+++.
T Consensus 250 --~~~~~~~~v~~~G-~--~~~~~~~~~~aDl~I~k---~----gg~tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 250 --AKFKSNENVLILG-Y--TKHMNEWMASSQLMITK---P----GGITISEGLARCIPMIFLNP 301 (391)
T ss_pred --HHhccCCCeEEEe-c--cchHHHHHHhhhEEEeC---C----chHHHHHHHHhCCCEEECCC
Confidence 334444 899998 4 57999999999999951 1 25689999999999999864
No 82
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.69 E-value=1.7e-15 Score=152.18 Aligned_cols=209 Identities=14% Similarity=0.052 Sum_probs=134.5
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHH-HHHHHHHHHHHhccCCEEEEeCHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAM 177 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~-~~i~~~~Ek~~~k~ad~ii~vS~~~ 177 (414)
..+||+||+|... ...+++.++++..++|++...++.. + .+....+ .... .+++.+.||.++++|+..
T Consensus 84 ~~~pDiv~~~gd~--~~~la~a~aa~~~~ipv~h~~~g~~-s-----~~~~~~~~~~~~---r~~~~~~ad~~~~~s~~~ 152 (365)
T TIGR00236 84 EEKPDIVLVQGDT--TTTLAGALAAFYLQIPVGHVEAGLR-T-----GDRYSPMPEEIN---RQLTGHIADLHFAPTEQA 152 (365)
T ss_pred HcCCCEEEEeCCc--hHHHHHHHHHHHhCCCEEEEeCCCC-c-----CCCCCCCccHHH---HHHHHHHHHhccCCCHHH
Confidence 4789999999752 4456677888889999875444321 1 1111101 1111 123456799999999999
Q ss_pred HHHHHHhhCCc---EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc
Q 015058 178 QHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL 253 (414)
Q Consensus 178 ~~~l~~~~gi~---i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (414)
++.+.+. |++ +.+++|+ ....+.+.....+.++++++ +
T Consensus 153 ~~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~------------------------------------~- 194 (365)
T TIGR00236 153 KDNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEF------------------------------------G- 194 (365)
T ss_pred HHHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHhc------------------------------------C-
Confidence 9999875 875 7889998 22222111111122333221 1
Q ss_pred CCCCCeEEEEeccC-CCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 254 KPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 254 ~~~~~~~i~~vgrl-~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
.+.+.++++.+|. ...|+++.+++|+..+.++ +|++++++.|.+.. +..+
T Consensus 195 -~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~~vi~~~~~~-~~~~ 245 (365)
T TIGR00236 195 -EDKRYILLTLHRRENVGEPLENIFKAIREIVEE---------------------------FEDVQIVYPVHLNP-VVRE 245 (365)
T ss_pred -CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHH---------------------------CCCCEEEEECCCCh-HHHH
Confidence 1233455554454 3458999999999988652 67888888764422 2222
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
++.+.++.. +|.|++ .+...++..+++.||+++.+ + +..+.|||+||+|||++
T Consensus 246 ~~~~~~~~~~~v~~~~-~~~~~~~~~~l~~ad~vv~~---S-----g~~~~EA~a~g~PvI~~ 299 (365)
T TIGR00236 246 PLHKHLGDSKRVHLIE-PLEYLDFLNLAANSHLILTD---S-----GGVQEEAPSLGKPVLVL 299 (365)
T ss_pred HHHHHhCCCCCEEEEC-CCChHHHHHHHHhCCEEEEC---C-----hhHHHHHHHcCCCEEEC
Confidence 344555665 899997 88899999999999999853 2 22479999999999996
No 83
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.68 E-value=2.5e-16 Score=140.57 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=98.3
Q ss_pred CCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHH
Q 015058 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (414)
Q Consensus 257 ~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~ 336 (414)
.+.+|+++||+.++||++.+++|+..+.++ ..+++.|+|+|+|+....++..++
T Consensus 14 ~~~~il~~g~~~~~K~~~~li~a~~~l~~~--------------------------~~~~~~l~i~G~~~~~~~~~~~~~ 67 (172)
T PF00534_consen 14 KKKIILFIGRLDPEKGIDLLIEAFKKLKEK--------------------------KNPNYKLVIVGDGEYKKELKNLIE 67 (172)
T ss_dssp TSEEEEEESESSGGGTHHHHHHHHHHHHHH--------------------------HHTTEEEEEESHCCHHHHHHHHHH
T ss_pred CCeEEEEEecCccccCHHHHHHHHHHHHhh--------------------------cCCCeEEEEEcccccccccccccc
Confidence 346999999999999999999999999753 146899999999999999999999
Q ss_pred HcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 337 RLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 337 ~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
.++++ +|.|.| +++.+++..+|+.||++|+++. .+++|.+++|||+||+|||++++++.
T Consensus 68 ~~~~~~~i~~~~-~~~~~~l~~~~~~~di~v~~s~---~e~~~~~~~Ea~~~g~pvI~~~~~~~ 127 (172)
T PF00534_consen 68 KLNLKENIIFLG-YVPDDELDELYKSSDIFVSPSR---NEGFGLSLLEAMACGCPVIASDIGGN 127 (172)
T ss_dssp HTTCGTTEEEEE-SHSHHHHHHHHHHTSEEEE-BS---SBSS-HHHHHHHHTT-EEEEESSTHH
T ss_pred cccccccccccc-cccccccccccccceecccccc---ccccccccccccccccceeeccccCC
Confidence 99997 999997 8888999999999999998754 37899999999999999999996654
No 84
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=8.6e-15 Score=149.84 Aligned_cols=270 Identities=13% Similarity=0.053 Sum_probs=162.7
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 015058 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (414)
Q Consensus 23 ~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~ 102 (414)
..+++|.++ +.++.+++.++.. ..+..-...++++.++ .. ++....+.+..+++.+.+ ..+++ +..+|
T Consensus 23 al~~~l~~~-~~~~~~~g~gg~~-m~~~g~~~~~~~~~l~--v~---G~~~~l~~~~~~~~~~~~----~~~~l-~~~kP 90 (385)
T TIGR00215 23 GLRQQLKEH-YPNARFIGVAGPR-MAAEGCEVLYSMEELS--VM---GLREVLGRLGRLLKIRKE----VVQLA-KQAKP 90 (385)
T ss_pred HHHHHHHhc-CCCcEEEEEccHH-HHhCcCccccChHHhh--hc---cHHHHHHHHHHHHHHHHH----HHHHH-HhcCC
Confidence 566777765 8999999866432 1111001123444443 11 111111122222222222 22222 34799
Q ss_pred cEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHH
Q 015058 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELA 182 (414)
Q Consensus 103 Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~ 182 (414)
|+|+....|+.+..+ + .+++..|+|+++++.--.+. +..++ -|.+.+.+|.++|.++..++.+.
T Consensus 91 d~vi~~g~~~~~~~~-a-~aa~~~gip~v~~i~P~~wa-----w~~~~---------~r~l~~~~d~v~~~~~~e~~~~~ 154 (385)
T TIGR00215 91 DLLVGIDAPDFNLTK-E-LKKKDPGIKIIYYISPQVWA-----WRKWR---------AKKIEKATDFLLAILPFEKAFYQ 154 (385)
T ss_pred CEEEEeCCCCccHHH-H-HHHhhCCCCEEEEeCCcHhh-----cCcch---------HHHHHHHHhHhhccCCCcHHHHH
Confidence 999999876555432 2 34566799998543111111 11110 24566889999999999988877
Q ss_pred HhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEE
Q 015058 183 QNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVV 262 (414)
Q Consensus 183 ~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 262 (414)
+ +|.++.++.|.-.+.+.+... ++.+.++++ +++++++.+++
T Consensus 155 ~-~g~~~~~vGnPv~~~~~~~~~-~~~~~r~~l------------------------------------gl~~~~~~Ilv 196 (385)
T TIGR00215 155 K-KNVPCRFVGHPLLDAIPLYKP-DRKSAREKL------------------------------------GIDHNGETLAL 196 (385)
T ss_pred h-cCCCEEEECCchhhhccccCC-CHHHHHHHc------------------------------------CCCCCCCEEEE
Confidence 5 478877776663222322101 233444443 34556664444
Q ss_pred Eec-cCCC-CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE-EcCCCChHHHHHHHHHcC
Q 015058 263 SST-SWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDKESYEEKIRRLR 339 (414)
Q Consensus 263 ~vg-rl~~-~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI-~G~G~~~e~l~~~i~~l~ 339 (414)
..| |..+ .|++..+++|++.+.+ ..|++++++ ++.|..++.+++..++++
T Consensus 197 l~GSR~aei~k~~~~ll~a~~~l~~---------------------------~~p~~~~vi~~~~~~~~~~~~~~~~~~~ 249 (385)
T TIGR00215 197 LPGSRGSEVEKLFPLFLKAAQLLEQ---------------------------QEPDLRRVLPVVNFKRRLQFEQIKAEYG 249 (385)
T ss_pred ECCCCHHHHHHhHHHHHHHHHHHHH---------------------------hCCCeEEEEEeCCchhHHHHHHHHHHhC
Confidence 444 6666 6899999999998875 368888866 567777888888888877
Q ss_pred CC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
.. +|.+.+ . +.+.+|++||++|+.+ +..++|+|++|+|+|.+.-.+
T Consensus 250 ~~~~v~~~~---~--~~~~~l~aADl~V~~S--------Gt~tlEa~a~G~P~Vv~yk~~ 296 (385)
T TIGR00215 250 PDLQLHLID---G--DARKAMFAADAALLAS--------GTAALEAALIKTPMVVGYRMK 296 (385)
T ss_pred CCCcEEEEC---c--hHHHHHHhCCEEeecC--------CHHHHHHHHcCCCEEEEEcCC
Confidence 76 777765 2 5678999999999753 335679999999999985543
No 85
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.61 E-value=9.3e-15 Score=162.25 Aligned_cols=220 Identities=11% Similarity=0.011 Sum_probs=145.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..-|+|.+|.. ..+++..++++. .+.++-+-+|-..++..- +..-..-..+.+ .+ -.||.|-..+....
T Consensus 146 ~~~d~vWvhDY---hL~llp~~lR~~~~~~~igfFlHiPFPs~e~--fr~lp~r~~il~----gl-l~aDligF~t~~y~ 215 (797)
T PLN03063 146 EEGDVVWCHDY---HLMFLPQYLKEYNNKMKVGWFLHTPFPSSEI--YKTLPSRSELLR----AV-LTADLIGFHTYDFA 215 (797)
T ss_pred CCCCEEEEecc---hhhhHHHHHHHhCCCCcEEEEecCCCCCHHH--HhhCCCHHHHHH----HH-hcCCEEEeCCHHHH
Confidence 34579999987 555566666654 356666666763221110 100000011222 11 26788888888777
Q ss_pred HHHHHh----------------hCC--cEEEecCC-CCCCcCCCC--hHHHH---HHHHHhhhhccCCCCccccccCCCC
Q 015058 179 HELAQN----------------WGI--KATVLYDQ-PPEFFHPTS--LEEKH---ELFCRLNKILHQPLGVQDCVSNGME 234 (414)
Q Consensus 179 ~~l~~~----------------~gi--~i~vI~n~-~~~~f~p~~--~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (414)
+.+.+. .|. ++.++||| |++.|.+.. ++.+. +++++
T Consensus 216 r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~-------------------- 275 (797)
T PLN03063 216 RHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRF-------------------- 275 (797)
T ss_pred HHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHh--------------------
Confidence 665431 111 27789999 777786542 11111 22222
Q ss_pred CCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCC
Q 015058 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (414)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
+ .+++ +|+++||+.+.||++.+|+|++.+.++ +
T Consensus 276 ------------------~-~~~~-lIl~VgRLd~~KGi~~lL~Afe~lL~~---------------------------~ 308 (797)
T PLN03063 276 ------------------F-AGRK-VILGVDRLDMIKGIPQKYLAFEKFLEE---------------------------N 308 (797)
T ss_pred ------------------c-CCCe-EEEEecccccccCHHHHHHHHHHHHHh---------------------------C
Confidence 1 1343 889999999999999999999998753 5
Q ss_pred CcE----EEEEE-----cCCCChHHHHHHHHHcC--CC---------cEEEecCCCChhhHHHHHhhccEEEeeccCCCC
Q 015058 315 PRL----LFIIT-----GKGPDKESYEEKIRRLR--LK---------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (414)
Q Consensus 315 p~i----~liI~-----G~G~~~e~l~~~i~~l~--l~---------~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g 374 (414)
|++ .|+++ |+|++.+++++.++++. ++ -|.+++..++.+++..+|++||+||+++ ..
T Consensus 309 P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtS---lr 385 (797)
T PLN03063 309 PEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTS---LR 385 (797)
T ss_pred ccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCc---cc
Confidence 654 34433 46777788888888874 32 2556666889999999999999999753 35
Q ss_pred CCCchhHHHHHHcCCe----EEEeeeCCc
Q 015058 375 LDLPMKVCYCWYSRYS----LKLLWTCSV 399 (414)
Q Consensus 375 ~~lP~kl~Eama~G~P----vi~s~~~~~ 399 (414)
+|++..++||||||.| +|+|..+|.
T Consensus 386 EGmnLv~lEamA~g~p~~gvlVlSe~~G~ 414 (797)
T PLN03063 386 DGMNLVSYEFVACQKAKKGVLVLSEFAGA 414 (797)
T ss_pred cccCcchhhHheeecCCCCCEEeeCCcCc
Confidence 7889999999999999 999999985
No 86
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.60 E-value=4.7e-15 Score=128.03 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Q 015058 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (414)
Q Consensus 19 ~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k 98 (414)
..+...+.+|+++ ||+|+|+++....... .....++.+++++. .... .....+ ..+..+..++ ..+
T Consensus 5 ~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~---~~~~~~----~~~~~~~~~l---~~~ 70 (160)
T PF13579_consen 5 RYVRELARALAAR-GHEVTVVTPQPDPEDD-EEEEDGVRVHRLPL--PRRP---WPLRLL----RFLRRLRRLL---AAR 70 (160)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE---GGG--SEEETTEEEEEE----S-SS---SGGGHC----CHHHHHHHHC---HHC
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCCCCccc-ccccCCceEEeccC--Cccc---hhhhhH----HHHHHHHHHH---hhh
Confidence 3566788899996 9999999987654322 23467899999983 2211 111111 1111111111 114
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+||+|++ ...+++.++++..++|+|+++|+.... ....+..++++++|+++++.||.++++|+.++
T Consensus 71 ~~~~Dvv~~~~~---~~~~~~~~~~~~~~~p~v~~~h~~~~~------~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 141 (160)
T PF13579_consen 71 RERPDVVHAHSP---TAGLVAALARRRRGIPLVVTVHGTLFR------RGSRWKRRLYRWLERRLLRRADRVIVVSEAMR 141 (160)
T ss_dssp T---SEEEEEHH---HHHHHHHHHHHHHT--EEEE-SS-T------------HHHHHHHHHHHHHHHH-SEEEESSHHHH
T ss_pred ccCCeEEEeccc---chhHHHHHHHHccCCcEEEEECCCchh------hccchhhHHHHHHHHHHHhcCCEEEECCHHHH
Confidence 589999999996 456667777767799999999986421 11345567788999999999999999999999
Q ss_pred HHHHHhhCCc---EEEecCC
Q 015058 179 HELAQNWGIK---ATVLYDQ 195 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~n~ 195 (414)
+.+.+ +|.+ +.|||||
T Consensus 142 ~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 142 RYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHH-H---GGGEEE----
T ss_pred HHHHH-hCCCCCcEEEeCcC
Confidence 99998 6875 8999997
No 87
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.1e-12 Score=122.32 Aligned_cols=221 Identities=21% Similarity=0.246 Sum_probs=147.0
Q ss_pred CcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCC-CcHHHH-HHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 102 PDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVS-IYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 102 ~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~-~~~~~~-i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
+|+++.+.....+............+.+.+..+|............. ...... ...+........++.+++.++...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE 163 (381)
T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHHHHH
Confidence 59998876522222122333344457788888888743211000000 111111 1111111111247899999998866
Q ss_pred HHHHhhCC-cEEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCC
Q 015058 180 ELAQNWGI-KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (414)
Q Consensus 180 ~l~~~~gi-~i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (414)
.....+.. ++.+++|+ +.+.+.+. + ..+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------------------~~~~~~~ 197 (381)
T COG0438 164 LLEALGVPNKIVVIPNGIDTEKFAPA----------R------------------------------------IGLLPEG 197 (381)
T ss_pred HHHHhCCCCCceEecCCcCHHHcCcc----------c------------------------------------cCCCccc
Confidence 66555333 26677777 44433321 0 0111222
Q ss_pred -CeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC-hHHHHHHH
Q 015058 258 -PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKI 335 (414)
Q Consensus 258 -~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~-~e~l~~~i 335 (414)
...++++||+.+.||++.+++|+..+.+. .+++.+.++|.|+. .+.+.+.+
T Consensus 198 ~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~~~~~g~~~~~~~~~~~~~ 250 (381)
T COG0438 198 GKFVVLYVGRLDPEKGLDLLIEAAAKLKKR---------------------------GPDIKLVIVGDGPERREELEKLA 250 (381)
T ss_pred CceEEEEeeccChhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEEcCCCccHHHHHHHH
Confidence 24899999999999999999999999863 44589999999998 47788888
Q ss_pred HHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 336 RRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 336 ~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++.. +|.|.| +++.+++..+++.||+++.|+.+ +++|..++|||++|+|||++++++.
T Consensus 251 ~~~~~~~~v~~~g-~~~~~~~~~~~~~~~~~v~ps~~---e~~~~~~~Ea~a~g~pvi~~~~~~~ 311 (381)
T COG0438 251 KKLGLEDNVKFLG-YVPDEELAELLASADVFVLPSLS---EGFGLVLLEAMAAGTPVIASDVGGI 311 (381)
T ss_pred HHhCCCCcEEEec-ccCHHHHHHHHHhCCEEEecccc---ccchHHHHHHHhcCCcEEECCCCCh
Confidence 888886 899986 88988999999999999977432 6788889999999999999998744
No 88
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.54 E-value=1.3e-13 Score=151.88 Aligned_cols=210 Identities=13% Similarity=0.034 Sum_probs=133.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhc-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..-|+|.+|+. ..+++..+++... ..++-+-+|-..++... +..-..-..+.+ .+ -.+|.|-..+....
T Consensus 132 ~~~d~vwvhDY---hl~l~p~~lr~~~~~~~igfFlH~pfP~~~~--f~~lp~~~~ll~----~l-l~~Dligf~t~~~~ 201 (726)
T PRK14501 132 RPGDVVWVHDY---QLMLLPAMLRERLPDARIGFFLHIPFPSFEV--FRLLPWREEILE----GL-LGADLIGFHTYDYV 201 (726)
T ss_pred CCCCEEEEeCc---hhhhHHHHHHhhCCCCcEEEEeeCCCCChHH--HhhCCChHHHHH----HH-hcCCeEEeCCHHHH
Confidence 34589999987 5556666666543 44555556653211110 000001011111 12 36888888888865
Q ss_pred HHHHHh----hC------------C--cEEEecCC-CCCCcCCCCh--HHH---HHHHHHhhhhccCCCCccccccCCCC
Q 015058 179 HELAQN----WG------------I--KATVLYDQ-PPEFFHPTSL--EEK---HELFCRLNKILHQPLGVQDCVSNGME 234 (414)
Q Consensus 179 ~~l~~~----~g------------i--~i~vI~n~-~~~~f~p~~~--~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~ 234 (414)
+.+.+. .+ . ++.++||| |++.|.+... +.+ .+++++
T Consensus 202 r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~-------------------- 261 (726)
T PRK14501 202 RHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQD-------------------- 261 (726)
T ss_pred HHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHH--------------------
Confidence 543321 12 1 26789999 8888876421 111 112211
Q ss_pred CCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCC
Q 015058 235 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 314 (414)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (414)
.+++ .+|+++||+.+.||+..+++|++.+.++ +
T Consensus 262 -------------------~~~~-~~il~VgRl~~~Kgi~~~l~A~~~ll~~---------------------------~ 294 (726)
T PRK14501 262 -------------------LRGR-KIILSIDRLDYTKGIPRRLLAFERFLEK---------------------------N 294 (726)
T ss_pred -------------------cCCC-EEEEEecCcccccCHHHHHHHHHHHHHh---------------------------C
Confidence 1244 3899999999999999999999988753 4
Q ss_pred Cc----EEEEEEc----CC-CChHHHHHHHHHc----C-------CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCC
Q 015058 315 PR----LLFIITG----KG-PDKESYEEKIRRL----R-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 374 (414)
Q Consensus 315 p~----i~liI~G----~G-~~~e~l~~~i~~l----~-------l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g 374 (414)
|+ ++|+++| +| ++.+++++.++++ + ...|.+..+.++++|++.+|++||+|++++ ..
T Consensus 295 p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S---~~ 371 (726)
T PRK14501 295 PEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTP---LR 371 (726)
T ss_pred ccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecc---cc
Confidence 54 7888887 44 5555666666554 1 223554445899999999999999999753 45
Q ss_pred CCCchhHHHHHHcCC
Q 015058 375 LDLPMKVCYCWYSRY 389 (414)
Q Consensus 375 ~~lP~kl~Eama~G~ 389 (414)
+|||.+++||||||.
T Consensus 372 EG~~lv~~Eama~~~ 386 (726)
T PRK14501 372 DGMNLVAKEYVASRT 386 (726)
T ss_pred cccCcccceEEEEcC
Confidence 789999999999965
No 89
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.9e-12 Score=136.30 Aligned_cols=234 Identities=17% Similarity=0.071 Sum_probs=156.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHh----hcCCeEEEEEcCcchhhh-------hhccCCCcHHHHH-------HHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASS----LRRSAFIVDWHNFGYTLL-------SLSLGRRSHFVSI-------YRWIEK 161 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~----~~~~~~Iv~~H~~~~~l~-------~~~~~~~~~~~~i-------~~~~Ek 161 (414)
..|||||+|++ ++.++..+.+. ...+|.|+|+||+.|.-. .+++ ....... ...++|
T Consensus 129 ~~pDIvH~hDW---qt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgL--p~~~~~~~~l~~~~~~~~lK 203 (487)
T COG0297 129 WLPDIVHAHDW---QTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGL--PFEAYASFGLEFYGQISFLK 203 (487)
T ss_pred CCCCEEEeecH---HHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcC--CHHHhhhceeeecCcchhhh
Confidence 47999999998 77776666665 457899999998744210 0111 1111110 002345
Q ss_pred HHhccCCEEEEeCHHHHHHHHH-hhCC-----------cEEEecCC-CCCCcCCCChH------------HHHHHHHHhh
Q 015058 162 YYGKMANGCLCVTQAMQHELAQ-NWGI-----------KATVLYDQ-PPEFFHPTSLE------------EKHELFCRLN 216 (414)
Q Consensus 162 ~~~k~ad~ii~vS~~~~~~l~~-~~gi-----------~i~vI~n~-~~~~f~p~~~~------------~~~~l~~~l~ 216 (414)
.-.-.||.|.+||+..++++.. .+|. +..-|.|+ |.+.+.|.... .|.+-+..|.
T Consensus 204 ~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~ 283 (487)
T COG0297 204 GGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQ 283 (487)
T ss_pred hhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHH
Confidence 5556899999999999988762 2221 14556777 66656554321 0111111111
Q ss_pred hhccCCCCccccccCCCCCCCCccceeeeccccccccC--CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccC
Q 015058 217 KILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLK--PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 294 (414)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~ 294 (414)
..++++ .+.| ++..+||++.+||++.+++|+..+.+.
T Consensus 284 --------------------------------~~~gL~~~~~~p-l~~~vsRl~~QKG~dl~~~~i~~~l~~-------- 322 (487)
T COG0297 284 --------------------------------ERLGLDVDLPGP-LFGFVSRLTAQKGLDLLLEAIDELLEQ-------- 322 (487)
T ss_pred --------------------------------HHhCCCCCCCCc-EEEEeeccccccchhHHHHHHHHHHHh--------
Confidence 112333 2345 999999999999999999999988752
Q ss_pred CCchhhhhhhhhcCCccCCCCcEEEEEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCC
Q 015058 295 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS 372 (414)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~--~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~ 372 (414)
.++|+|.|.|. .++.+.++++++.- ++... .+.+..-...+++.||+++.| |
T Consensus 323 ---------------------~~~~vilG~gd~~le~~~~~la~~~~~-~~~~~-i~~~~~la~~i~agaD~~lmP---S 376 (487)
T COG0297 323 ---------------------GWQLVLLGTGDPELEEALRALASRHPG-RVLVV-IGYDEPLAHLIYAGADVILMP---S 376 (487)
T ss_pred ---------------------CceEEEEecCcHHHHHHHHHHHHhcCc-eEEEE-eeecHHHHHHHHhcCCEEEeC---C
Confidence 38999999992 23455556665544 45554 366888999999999999987 3
Q ss_pred CCCCCchhHHHHHHcCCeEEEeeeCCcccchhh
Q 015058 373 SGLDLPMKVCYCWYSRYSLKLLWTCSVVGCLFV 405 (414)
Q Consensus 373 ~g~~lP~kl~Eama~G~Pvi~s~~~~~~~~~~~ 405 (414)
..|..+..-++||..|++.|+..|+|..+-++.
T Consensus 377 rfEPcGL~ql~amryGtvpIv~~tGGLadTV~~ 409 (487)
T COG0297 377 RFEPCGLTQLYAMRYGTLPIVRETGGLADTVVD 409 (487)
T ss_pred cCcCCcHHHHHHHHcCCcceEcccCCccceecC
Confidence 466777788999999999999999987665543
No 90
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.48 E-value=8.8e-14 Score=119.52 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=74.8
Q ss_pred eEEEEeccCCCCCChHHHHH-HHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHH
Q 015058 259 ALVVSSTSWTPDEDFGILLE-AALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 337 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~Lle-A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~ 337 (414)
..+++.|++.+.||++.+++ |++.++++ .|+++|.|+|.+++ +++++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~---------------------------~p~~~l~i~G~~~~--~l~~~--- 50 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEK---------------------------HPDIELIIIGNGPD--ELKRL--- 50 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHH---------------------------STTEEEEEECESS---HHCCH---
T ss_pred ccccccccccccccccchhhhHHHHHHHH---------------------------CcCEEEEEEeCCHH--HHHHh---
Confidence 47899999999999999999 99999874 68999999999988 24443
Q ss_pred cCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 338 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 338 l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
.-++|+|+| ++ ++++.++++||++++|.. .++++|+|++|||++|+|||+++.
T Consensus 51 -~~~~v~~~g-~~--~e~~~~l~~~dv~l~p~~--~~~~~~~k~~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 51 -RRPNVRFHG-FV--EELPEILAAADVGLIPSR--FNEGFPNKLLEAMAAGKPVIASDN 103 (135)
T ss_dssp -HHCTEEEE--S---HHHHHHHHC-SEEEE-BS--S-SCC-HHHHHHHCTT--EEEEHH
T ss_pred -cCCCEEEcC-CH--HHHHHHHHhCCEEEEEee--CCCcCcHHHHHHHHhCCCEEECCc
Confidence 122899998 76 689999999999998743 234789999999999999999988
No 91
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.48 E-value=3.4e-13 Score=118.25 Aligned_cols=168 Identities=22% Similarity=0.257 Sum_probs=85.9
Q ss_pred EEeCCCCCChHHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHH
Q 015058 10 VVLGDLGRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLI 86 (414)
Q Consensus 10 ~~~~d~~~~~r~~~~a~~La~~---~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~ 86 (414)
++...+...+|++.++.+|++. .||+|+++|.....+... ......... .... .......+. ..
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~----~~~~~~~~~--~~~~--~~~~~~~~~----~~- 69 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE----ELVKIFVKI--PYPI--RKRFLRSFF----FM- 69 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS----TEEEE---T--T-SS--TSS--HHHH----HH-
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh----hccceeeee--eccc--ccccchhHH----HH-
Confidence 3334445667777666555444 599999999876442221 111111111 1111 111111111 11
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhcc
Q 015058 87 QFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKM 166 (414)
Q Consensus 87 ~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ 166 (414)
..++.++ +..+||+||+|.++.. ..+.++.+ ++|++.++|+........ ....+.......++++.+++.
T Consensus 70 ---~~~~~~i-~~~~~DiVh~~~~~~~---~~~~~~~~--~~~~v~~~H~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (177)
T PF13439_consen 70 ---RRLRRLI-KKEKPDIVHIHGPPAF---WIALLACR--KVPIVYTIHGPYFERRFL-KSKLSPYSYLNFRIERKLYKK 139 (177)
T ss_dssp ---HHHHHHH-HHHT-SEEECCTTHCC---CHHHHHHH--CSCEEEEE-HHH--HHTT-TTSCCCHHHHHHCTTHHHHCC
T ss_pred ---HHHHHHH-HHcCCCeEEecccchh---HHHHHhcc--CCCEEEEeCCCccccccc-ccccchhhhhhhhhhhhHHhc
Confidence 1122222 2369999999987322 23333333 899999999975210000 112334445555667777899
Q ss_pred CCEEEEeCHHHHHHHHHhhCCc---EEEecCC-CCCCcC
Q 015058 167 ANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFH 201 (414)
Q Consensus 167 ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~-~~~~f~ 201 (414)
+|.++|+|+.+++++.+ +|++ +.+|||| |.+.|+
T Consensus 140 ~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 140 ADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp SSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred CCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 99999999999999999 7865 8999999 888773
No 92
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.39 E-value=1.2e-11 Score=130.43 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=88.4
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCc----EEEEEEcCCC-----C--
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKGP-----D-- 327 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----i~liI~G~G~-----~-- 327 (414)
.+|++++|+...||+...++|++.+.++ +|+ +.|+++|.+. +
T Consensus 286 kiIl~VDRLDy~KGI~~kl~Afe~~L~~---------------------------~Pe~~gkv~Lvqi~~psr~~v~~y~ 338 (487)
T TIGR02398 286 KLILSAERVDYTKGILEKLNAYERLLER---------------------------RPELLGKVTLVTACVPAASGMTIYD 338 (487)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHHh---------------------------CccccCceEEEEEeCCCcccchHHH
Confidence 3999999999999999999999998663 564 7899998763 2
Q ss_pred --hHHHHHHHHHc-------CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCC----eEEEe
Q 015058 328 --KESYEEKIRRL-------RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRY----SLKLL 394 (414)
Q Consensus 328 --~e~l~~~i~~l-------~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~----Pvi~s 394 (414)
++++++.+.+. +...|.+..+.++.+++..+|+.||+++++ +.-.|+-.+..||+||+. |+|.|
T Consensus 339 ~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT---~lrDGmNLVa~Eyva~~~~~~GvLILS 415 (487)
T TIGR02398 339 ELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWIT---PLRDGLNLVAKEYVAAQGLLDGVLVLS 415 (487)
T ss_pred HHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEEC---ccccccCcchhhHHhhhcCCCCCEEEe
Confidence 34555555554 566455555599999999999999999864 334577889999999999 99999
Q ss_pred eeCCc
Q 015058 395 WTCSV 399 (414)
Q Consensus 395 ~~~~~ 399 (414)
...|.
T Consensus 416 efaGa 420 (487)
T TIGR02398 416 EFAGA 420 (487)
T ss_pred ccccc
Confidence 98875
No 93
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.28 E-value=1.2e-10 Score=100.86 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=91.4
Q ss_pred EEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHH
Q 015058 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (414)
Q Consensus 9 v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~ 88 (414)
|+.+++. .++.+..++.+|.++ ||+|+++|..... ......+++++++++ .. .+ . .+.++ +.
T Consensus 2 Il~i~~~-~~~~~~~~~~~L~~~-g~~V~ii~~~~~~--~~~~~~~~i~~~~~~--~~-~k----~--~~~~~-~~---- 63 (139)
T PF13477_consen 2 ILLIGNT-PSTFIYNLAKELKKR-GYDVHIITPRNDY--EKYEIIEGIKVIRLP--SP-RK----S--PLNYI-KY---- 63 (139)
T ss_pred EEEEecC-cHHHHHHHHHHHHHC-CCEEEEEEcCCCc--hhhhHhCCeEEEEec--CC-CC----c--cHHHH-HH----
Confidence 4444542 356788999999996 9999999986543 333346789999987 22 11 1 11111 11
Q ss_pred HHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcC-CeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccC
Q 015058 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (414)
Q Consensus 89 ~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~-~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~a 167 (414)
. .+++++ +..+||+||+|.+. +.++++.+++++.+ +|+|++.|+.+. +. .+...++.++++++..++|
T Consensus 64 ~-~l~k~i-k~~~~DvIh~h~~~--~~~~~~~l~~~~~~~~~~i~~~hg~~~------~~-~~~~~~~~~~~~~~~~k~~ 132 (139)
T PF13477_consen 64 F-RLRKII-KKEKPDVIHCHTPS--PYGLFAMLAKKLLKNKKVIYTVHGSDF------YN-SSKKKKLKKFIIKFAFKRA 132 (139)
T ss_pred H-HHHHHh-ccCCCCEEEEecCC--hHHHHHHHHHHHcCCCCEEEEecCCee------ec-CCchHHHHHHHHHHHHHhC
Confidence 1 122333 34789999999872 33566777788888 999999998753 11 1222337788999999999
Q ss_pred CEEEEeC
Q 015058 168 NGCLCVT 174 (414)
Q Consensus 168 d~ii~vS 174 (414)
|.++|.|
T Consensus 133 ~~ii~~~ 139 (139)
T PF13477_consen 133 DKIIVQS 139 (139)
T ss_pred CEEEEcC
Confidence 9999976
No 94
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.25 E-value=3.2e-09 Score=107.77 Aligned_cols=267 Identities=12% Similarity=0.088 Sum_probs=140.0
Q ss_pred CCChHHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 015058 16 GRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (414)
Q Consensus 16 ~~~~r~~~~a~~La~~---~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~ 92 (414)
|+.+|+-+=|.++++. .||+|.+++..... ..++....++.++.++ ....++. .....+..+++.+...+..+
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~-e~~l~~~~g~~~~~~~--~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 84 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI-EKTIIEKENIPYYSIS--SGKLRRY-FDLKNIKDPFLVMKGVMDAY 84 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc-ccccCcccCCcEEEEe--ccCcCCC-chHHHHHHHHHHHHHHHHHH
Confidence 3446666655444433 49999999966432 2333334467777776 2221111 01222333334333322222
Q ss_pred HHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEE
Q 015058 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (414)
Q Consensus 93 ~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~ 172 (414)
+++ +..+||+||.+.. ...+.+.+++++.|+|++++-.+... .. .-+.+.+.||.+.+
T Consensus 85 -~i~-~~~kPdvvi~~Gg---y~s~p~~~aa~~~~~p~~i~e~n~~~----------g~-------~nr~~~~~a~~v~~ 142 (352)
T PRK12446 85 -VRI-RKLKPDVIFSKGG---FVSVPVVIGGWLNRVPVLLHESDMTP----------GL-------ANKIALRFASKIFV 142 (352)
T ss_pred -HHH-HhcCCCEEEecCc---hhhHHHHHHHHHcCCCEEEECCCCCc----------cH-------HHHHHHHhhCEEEE
Confidence 222 4589999999864 23334567788899999875444321 11 12345578888876
Q ss_pred eCHHHHHHHHHhhC-CcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccc
Q 015058 173 VTQAMQHELAQNWG-IKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDV 251 (414)
Q Consensus 173 vS~~~~~~l~~~~g-i~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (414)
--+...+ .+. .++.++-|.-.+.|... .+.+.++++
T Consensus 143 ~f~~~~~----~~~~~k~~~tG~Pvr~~~~~~---~~~~~~~~~------------------------------------ 179 (352)
T PRK12446 143 TFEEAAK----HLPKEKVIYTGSPVREEVLKG---NREKGLAFL------------------------------------ 179 (352)
T ss_pred Eccchhh----hCCCCCeEEECCcCCcccccc---cchHHHHhc------------------------------------
Confidence 5544332 222 12433322211223211 122223222
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEE-EEcCCCChHH
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI-ITGKGPDKES 330 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~li-I~G~G~~~e~ 330 (414)
++++++|.++++-|+... ..+-+++..+.... ..+++++ ++|+..
T Consensus 180 ~l~~~~~~iLv~GGS~Ga----~~in~~~~~~l~~l--------------------------~~~~~vv~~~G~~~---- 225 (352)
T PRK12446 180 GFSRKKPVITIMGGSLGA----KKINETVREALPEL--------------------------LLKYQIVHLCGKGN---- 225 (352)
T ss_pred CCCCCCcEEEEECCccch----HHHHHHHHHHHHhh--------------------------ccCcEEEEEeCCch----
Confidence 345667777788888864 33334333322110 1135554 467543
Q ss_pred HHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 331 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 331 l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+++...+. .++...+ ++ .++++.+|++||++|+- .| .+.+.|++++|+|.|....
T Consensus 226 ~~~~~~~~--~~~~~~~-f~-~~~m~~~~~~adlvIsr----~G---~~t~~E~~~~g~P~I~iP~ 280 (352)
T PRK12446 226 LDDSLQNK--EGYRQFE-YV-HGELPDILAITDFVISR----AG---SNAIFEFLTLQKPMLLIPL 280 (352)
T ss_pred HHHHHhhc--CCcEEec-ch-hhhHHHHHHhCCEEEEC----CC---hhHHHHHHHcCCCEEEEcC
Confidence 22222221 2334444 42 37899999999999953 11 3468999999999998743
No 95
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.17 E-value=2.2e-08 Score=100.48 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=142.0
Q ss_pred CCCcEEEEeCCCCch-HHHHHHHHHhhcCCeEEEEEcCcchh--hhh-hccC-CCcH-------HHHHHHHHHHHHhccC
Q 015058 100 ASPDVFLVQNPPSVP-TLVAVKWASSLRRSAFIVDWHNFGYT--LLS-LSLG-RRSH-------FVSIYRWIEKYYGKMA 167 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~-~~~~~~la~~~~~~~~Iv~~H~~~~~--l~~-~~~~-~~~~-------~~~i~~~~Ek~~~k~a 167 (414)
.-|||.+=..- ++ +++ ..+++.++|++.-+|-..-+ .+. +... ..+. .++++..+-++.+..|
T Consensus 149 ~~Pdi~IDtMG--Y~fs~p---~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~a 223 (465)
T KOG1387|consen 149 FPPDIFIDTMG--YPFSYP---IFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKA 223 (465)
T ss_pred CCchheEecCC--CcchhH---HHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccc
Confidence 68998655431 11 222 33557899999888864111 111 1000 0111 1344444446778899
Q ss_pred CEEEEeCHHHHHHHHHhhCCc-EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeec
Q 015058 168 NGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSL 246 (414)
Q Consensus 168 d~ii~vS~~~~~~l~~~~gi~-i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (414)
|.+++.|-=.+..+.+.|+.. ..++|-. -+.+ .+.+..+ +
T Consensus 224 d~vm~NssWT~nHI~qiW~~~~~~iVyPP-------C~~e---~lks~~~-------------------t---------- 264 (465)
T KOG1387|consen 224 DIVMTNSSWTNNHIKQIWQSNTCSIVYPP-------CSTE---DLKSKFG-------------------T---------- 264 (465)
T ss_pred eEEEecchhhHHHHHHHhhccceeEEcCC-------CCHH---HHHHHhc-------------------c----------
Confidence 999999999999999999765 5555422 2211 2222211 0
Q ss_pred cccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC--
Q 015058 247 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-- 324 (414)
Q Consensus 247 ~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-- 324 (414)
..++...++++|.++|+|++. +|+.+.....+ |--| ..-+.++|+|+|.
T Consensus 265 -------e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~------------------~pl~---a~~~~iKL~ivGScR 315 (465)
T KOG1387|consen 265 -------EGERENQLLSLAQFRPEKNHK-ILQLFALYLKN------------------EPLE---ASVSPIKLIIVGSCR 315 (465)
T ss_pred -------cCCcceEEEEEeecCcccccH-HHHHHHHHHhc------------------Cchh---hccCCceEEEEeccC
Confidence 123335899999999999999 66666655432 0000 1235699999995
Q ss_pred CC-Ch---HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 325 GP-DK---ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 325 G~-~~---e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+. +. +.++.++++|.++ +|+|-- -+|.+|+..+|+.|.++| |+- -.|-|+..+.||||+|+=.|+-+-+
T Consensus 316 neeD~ervk~Lkd~a~~L~i~~~v~F~~-N~Py~~lv~lL~~a~iGv--h~M-wNEHFGIsVVEyMAAGlIpi~h~Sg 389 (465)
T KOG1387|consen 316 NEEDEERVKSLKDLAEELKIPKHVQFEK-NVPYEKLVELLGKATIGV--HTM-WNEHFGISVVEYMAAGLIPIVHNSG 389 (465)
T ss_pred ChhhHHHHHHHHHHHHhcCCccceEEEe-cCCHHHHHHHhccceeeh--hhh-hhhhcchhHHHHHhcCceEEEeCCC
Confidence 32 22 3677788999998 999985 899999999999999999 321 2345778899999999877664433
No 96
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.16 E-value=4.9e-09 Score=97.77 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHhh---CCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 015058 17 RSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (414)
Q Consensus 17 ~~~r~~~~a~~La~~---~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~ 93 (414)
.-+|.+..+++|+.+ .|++|+|.|.....+ ....+..|+++.++| ....+ ....+.+ -+..+...++
T Consensus 15 ~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~-~~~~~y~gv~l~~i~--~~~~g----~~~si~y---d~~sl~~al~ 84 (185)
T PF09314_consen 15 RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYP-YKEFEYNGVRLVYIP--APKNG----SAESIIY---DFLSLLHALR 84 (185)
T ss_pred ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCC-CCCcccCCeEEEEeC--CCCCC----chHHHHH---HHHHHHHHHH
Confidence 456777777777655 599999999876442 334456899999998 32111 1111111 1111111111
Q ss_pred HHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhc--CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEE
Q 015058 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (414)
Q Consensus 94 ~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~--~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii 171 (414)
.......+.||+|++... +..++..++++++ |.|++++.|+..|.- -+.+.+.++++++-|+..-+.||.+|
T Consensus 85 ~~~~~~~~~~ii~ilg~~--~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR----~KW~~~~k~~lk~~E~~avk~ad~lI 158 (185)
T PF09314_consen 85 FIKQDKIKYDIILILGYG--IGPFFLPFLRKLRKKGGKVVVNMDGLEWKR----AKWGRPAKKYLKFSEKLAVKYADRLI 158 (185)
T ss_pred HHhhccccCCEEEEEcCC--ccHHHHHHHHhhhhcCCcEEECCCcchhhh----hhcCHHHHHHHHHHHHHHHHhCCEEE
Confidence 111122468899999762 1234445555543 679999999987621 12344557888888999999999999
Q ss_pred EeCHHHHHHHHHhhC-CcEEEecCC
Q 015058 172 CVTQAMQHELAQNWG-IKATVLYDQ 195 (414)
Q Consensus 172 ~vS~~~~~~l~~~~g-i~i~vI~n~ 195 (414)
|-|+.++++++++|+ .+.++|++|
T Consensus 159 aDs~~I~~y~~~~y~~~~s~~IaYG 183 (185)
T PF09314_consen 159 ADSKGIQDYIKERYGRKKSTFIAYG 183 (185)
T ss_pred EcCHHHHHHHHHHcCCCCcEEecCC
Confidence 999999999999999 678888877
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=6.7e-08 Score=98.71 Aligned_cols=255 Identities=19% Similarity=0.125 Sum_probs=138.9
Q ss_pred HHHHHHhhCCCc-EEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 015058 24 QALSLARQMSLE-VDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (414)
Q Consensus 24 ~a~~La~~~g~e-V~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~ 102 (414)
.++.|.++ |++ |.++...... ...+....+++++.++ ....++... ...+...++.+...+.. .+++ +..+|
T Consensus 20 l~~~l~~~-g~~~v~~~~~~~~~-e~~l~~~~~~~~~~I~--~~~~~~~~~-~~~~~~~~~~~~~~~~a-~~il-~~~kP 92 (357)
T COG0707 20 LAEELAKR-GWEQVIVLGTGDGL-EAFLVKQYGIEFELIP--SGGLRRKGS-LKLLKAPFKLLKGVLQA-RKIL-KKLKP 92 (357)
T ss_pred HHHHHHhh-CccEEEEecccccc-eeeeccccCceEEEEe--cccccccCc-HHHHHHHHHHHHHHHHH-HHHH-HHcCC
Confidence 44566665 996 5555443322 2233344588999998 333322221 11222222322221111 1222 34899
Q ss_pred cEEEEeCC-CCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHH
Q 015058 103 DVFLVQNP-PSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (414)
Q Consensus 103 Dvvh~~~p-p~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l 181 (414)
|+|+.... ++.|. .++++..|+|++++..|... |.. .++..+.|+.|.+.-+...
T Consensus 93 d~vig~Ggyvs~P~----~~Aa~~~~iPv~ihEqn~~~-------G~a----------nk~~~~~a~~V~~~f~~~~--- 148 (357)
T COG0707 93 DVVIGTGGYVSGPV----GIAAKLLGIPVIIHEQNAVP-------GLA----------NKILSKFAKKVASAFPKLE--- 148 (357)
T ss_pred CEEEecCCccccHH----HHHHHhCCCCEEEEecCCCc-------chh----------HHHhHHhhceeeecccccc---
Confidence 99988643 34433 34566788999987766532 111 1344566777766555411
Q ss_pred HHhhC-CcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeE
Q 015058 182 AQNWG-IKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPAL 260 (414)
Q Consensus 182 ~~~~g-i~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (414)
.... -++.+.-|.....|.... . .+.+.. ...+++.+
T Consensus 149 -~~~~~~~~~~tG~Pvr~~~~~~~-~--~~~~~~--------------------------------------~~~~~~~i 186 (357)
T COG0707 149 -AGVKPENVVVTGIPVRPEFEELP-A--AEVRKD--------------------------------------GRLDKKTI 186 (357)
T ss_pred -ccCCCCceEEecCcccHHhhccc-h--hhhhhh--------------------------------------ccCCCcEE
Confidence 1111 124444444222232211 1 111100 01145567
Q ss_pred EEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEE-EEEcCCCChHHHHHHHHHcC
Q 015058 261 VVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEEKIRRLR 339 (414)
Q Consensus 261 i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~l-iI~G~G~~~e~l~~~i~~l~ 339 (414)
+++-|+...+ .+-+++..+.... ..++++ .++|++. .+++++.-++++
T Consensus 187 lV~GGS~Ga~----~ln~~v~~~~~~l--------------------------~~~~~v~~~~G~~~-~~~~~~~~~~~~ 235 (357)
T COG0707 187 LVTGGSQGAK----ALNDLVPEALAKL--------------------------ANRIQVIHQTGKND-LEELKSAYNELG 235 (357)
T ss_pred EEECCcchhH----HHHHHHHHHHHHh--------------------------hhCeEEEEEcCcch-HHHHHHHHhhcC
Confidence 7888887544 4444444433210 114665 4577776 677777777777
Q ss_pred CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 340 LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 340 l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
. +...+ ..+|++.+|++||+.||-. | .+.+.|+.++|+|+|.-
T Consensus 236 ~--~~v~~---f~~dm~~~~~~ADLvIsRa----G---a~Ti~E~~a~g~P~Ili 278 (357)
T COG0707 236 V--VRVLP---FIDDMAALLAAADLVISRA----G---ALTIAELLALGVPAILV 278 (357)
T ss_pred c--EEEee---HHhhHHHHHHhccEEEeCC----c---ccHHHHHHHhCCCEEEe
Confidence 6 77777 7889999999999999632 2 34689999999999963
No 98
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.03 E-value=1e-08 Score=115.31 Aligned_cols=218 Identities=10% Similarity=-0.009 Sum_probs=135.7
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHhhc-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHh--ccCCEEEEeCHHH
Q 015058 101 SPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG--KMANGCLCVTQAM 177 (414)
Q Consensus 101 ~~Dvvh~~~pp~~~~~~~~~la~~~~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~--k~ad~ii~vS~~~ 177 (414)
.-|+|.+|+. ..+++..+++... ..++-+-+|-..++. -+.+.+.|=+..+. =.||.|-..+...
T Consensus 231 ~gD~VWVHDY---HL~LlP~~LR~~~p~~~IGfFlHiPFPs~---------Eifr~LP~r~elL~glL~aDlIGFqT~~y 298 (934)
T PLN03064 231 EGDVVWCHDY---HLMFLPKCLKEYNSNMKVGWFLHTPFPSS---------EIHRTLPSRSELLRSVLAADLVGFHTYDY 298 (934)
T ss_pred CCCEEEEecc---hhhHHHHHHHHhCCCCcEEEEecCCCCCh---------HHHhhCCcHHHHHHHHhcCCeEEeCCHHH
Confidence 4479999987 5555666666543 455555566532111 11111111111111 2689999999988
Q ss_pred HHHHHHh----hCCc--------------EEEecCC-CCCCcCCC--ChH---HHHHHHHHhhhhccCCCCccccccCCC
Q 015058 178 QHELAQN----WGIK--------------ATVLYDQ-PPEFFHPT--SLE---EKHELFCRLNKILHQPLGVQDCVSNGM 233 (414)
Q Consensus 178 ~~~l~~~----~gi~--------------i~vI~n~-~~~~f~p~--~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (414)
++.+.+- .|.. +.+.|-| |++.|... +++ ...++++++
T Consensus 299 ~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~------------------ 360 (934)
T PLN03064 299 ARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF------------------ 360 (934)
T ss_pred HHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh------------------
Confidence 7765431 1211 3455666 66666432 111 112333332
Q ss_pred CCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCC
Q 015058 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 313 (414)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
. ++ .+|++++|+.+.||+...++|++.+.++
T Consensus 361 --------------------~-g~-kiIlgVDRLD~~KGI~~kL~AfE~fL~~--------------------------- 391 (934)
T PLN03064 361 --------------------A-GR-KVMLGVDRLDMIKGIPQKILAFEKFLEE--------------------------- 391 (934)
T ss_pred --------------------C-Cc-eEEEEeeccccccCHHHHHHHHHHHHHh---------------------------
Confidence 1 34 3999999999999999999999987653
Q ss_pred CCcEE--EEEE-------cCCCChHHHHHHHHH----cC-------CCcEEEecCCCChhhHHHHHhhccEEEeeccCCC
Q 015058 314 YPRLL--FIIT-------GKGPDKESYEEKIRR----LR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS 373 (414)
Q Consensus 314 ~p~i~--liI~-------G~G~~~e~l~~~i~~----l~-------l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~ 373 (414)
+|+.+ ++++ |++++.+++++.+.+ .+ ..-|.++...++.+++..+|+.||+++++ +.
T Consensus 392 ~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvT---sl 468 (934)
T PLN03064 392 NPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVT---SL 468 (934)
T ss_pred CccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeC---cc
Confidence 56643 4444 677776666555544 22 12366665568999999999999999964 33
Q ss_pred CCCCchhHHHHHHcCC----eEEEeeeCCcc
Q 015058 374 GLDLPMKVCYCWYSRY----SLKLLWTCSVV 400 (414)
Q Consensus 374 g~~lP~kl~Eama~G~----Pvi~s~~~~~~ 400 (414)
-+|+.....|||+|+. ++|.|...|.-
T Consensus 469 rDGmNLva~Eyva~~~~~~GvLILSEfaGaa 499 (934)
T PLN03064 469 RDGMNLVSYEFVACQDSKKGVLILSEFAGAA 499 (934)
T ss_pred ccccCchHHHHHHhhcCCCCCeEEeCCCchH
Confidence 4677888999999954 45558888765
No 99
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.03 E-value=1.9e-08 Score=105.74 Aligned_cols=195 Identities=14% Similarity=0.055 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhh---CCc-EEEecCC-CCCCcCCCChHHHHHHHHHhhhhccCCCCccc
Q 015058 153 VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNW---GIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQD 227 (414)
Q Consensus 153 ~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~---gi~-i~vI~n~-~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~ 227 (414)
...+.++|-.....+|.+++.|.-.+......+ +.. +++.|-. +.+.+.+.--+.+.+.+
T Consensus 196 ~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~--------------- 260 (495)
T KOG0853|consen 196 RHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELR--------------- 260 (495)
T ss_pred hhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcc---------------
Confidence 344566666666789999999887776554432 111 4555444 33333331111111111
Q ss_pred cccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhc
Q 015058 228 CVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEIS 307 (414)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (414)
...+...+....+ .+.....++.|.||++.+++|+..+....+
T Consensus 261 -----------------~~~r~~~~v~~~d-~~~~siN~~~pgkd~~l~l~a~~~~~~~i~------------------- 303 (495)
T KOG0853|consen 261 -----------------LPVRLYRGVSGID-RFFPSINRFEPGKDQDLALPAFTLLHDSIP------------------- 303 (495)
T ss_pred -----------------cccceeeeecccc-eEeeeeeecCCCCCceeehhhHHhhhcccC-------------------
Confidence 1111112222212 467788899999999999999998876421
Q ss_pred CCccCCCCcEEEEEEcC-CC---------ChHHHHHHHHHcCC-C-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCC
Q 015058 308 DGKQYLYPRLLFIITGK-GP---------DKESYEEKIRRLRL-K-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL 375 (414)
Q Consensus 308 ~~~~~~~p~i~liI~G~-G~---------~~e~l~~~i~~l~l-~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~ 375 (414)
++..++.+++++|+ |- ..+++.++++++++ + .|.|+. +..+...|..+||.-+..++ +.+|
T Consensus 304 ---~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~---s~~~~~~yrl~adt~~v~~q-Pa~E 376 (495)
T KOG0853|consen 304 ---EPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLP---STTRVAKYRLAADTKGVLYQ-PANE 376 (495)
T ss_pred ---CCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEec---CCchHHHHHHHHhcceEEec-CCCC
Confidence 12456789999983 21 23578889999998 3 788876 66677778888887654444 3458
Q ss_pred CCchhHHHHHHcCCeEEEeeeCC--------cccchhhh
Q 015058 376 DLPMKVCYCWYSRYSLKLLWTCS--------VVGCLFVL 406 (414)
Q Consensus 376 ~lP~kl~Eama~G~Pvi~s~~~~--------~~~~~~~~ 406 (414)
.|+...+||||||+||+|++.+| ++|.|...
T Consensus 377 ~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp 415 (495)
T KOG0853|consen 377 HFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP 415 (495)
T ss_pred CccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC
Confidence 89999999999999999988776 56776543
No 100
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.00 E-value=6.4e-09 Score=110.96 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=93.4
Q ss_pred EEEEec--cCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh---HHHHHH
Q 015058 260 LVVSST--SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESYEEK 334 (414)
Q Consensus 260 ~i~~vg--rl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~---e~l~~~ 334 (414)
.+++++ |+ ++|.++.+|+|+..+.+ +.|+++|.+.|.|... +.+++.
T Consensus 321 ~~I~v~idrL-~ek~~~~~I~av~~~~~---------------------------~~p~~~L~~~gy~~~~~~~~~l~~~ 372 (519)
T TIGR03713 321 TEIGFWIDGL-SDEELQQILQQLLQYIL---------------------------KNPDYELKILTYNNDNDITQLLEDI 372 (519)
T ss_pred eEEEEEcCCC-ChHHHHHHHHHHHHHHh---------------------------hCCCeEEEEEEecCchhHHHHHHHH
Confidence 677888 99 99999999999999976 4899999999988654 667777
Q ss_pred HHHcCCC------------------------------cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHH
Q 015058 335 IRRLRLK------------------------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYC 384 (414)
Q Consensus 335 i~~l~l~------------------------------~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Ea 384 (414)
+++++++ +|+|.| +.+.+|+...|+.|.++|.++ ..+|++ .++||
T Consensus 373 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~g-y~~e~dl~~~~~~arl~id~s---~~eg~~-~~ieA 447 (519)
T TIGR03713 373 LEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTT-LTNEEDLISALDKLRLIIDLS---KEPDLY-TQISG 447 (519)
T ss_pred HHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEe-cCCHHHHHHHHhhheEEEECC---CCCChH-HHHHH
Confidence 7777555 899997 767779999999999999653 346889 99999
Q ss_pred HHcCCeEEE-----eeeCCcccchh
Q 015058 385 WYSRYSLKL-----LWTCSVVGCLF 404 (414)
Q Consensus 385 ma~G~Pvi~-----s~~~~~~~~~~ 404 (414)
+++|+|+|- ....|.+|.|+
T Consensus 448 iS~GiPqInyg~~~~V~d~~NG~li 472 (519)
T TIGR03713 448 ISAGIPQINKVETDYVEHNKNGYII 472 (519)
T ss_pred HHcCCCeeecCCceeeEcCCCcEEe
Confidence 999999994 34678899983
No 101
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.94 E-value=1.5e-07 Score=97.17 Aligned_cols=279 Identities=13% Similarity=0.101 Sum_probs=155.9
Q ss_pred ChHHHHHHHHHHhh-CCCcEE---EEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCC--chHHHHHHHH-HHHHHHH
Q 015058 18 SPRMQYQALSLARQ-MSLEVD---VVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPK--VLKPVLLLLK-PLIQFFM 90 (414)
Q Consensus 18 ~~r~~~~a~~La~~-~g~eV~---vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~--~~~~~~~l~k-~l~~~~~ 90 (414)
+--....++.|.++ .|++|. +|+.+... ........+ +++.+| . .++.+ ....+..+++ .+...+
T Consensus 10 d~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~-e~~~ip~~g-~~~~~~--s---gg~~~~~~~~~~~~~~~gl~~~~~- 81 (396)
T TIGR03492 10 DLIAARIAKALLQLSPDLNLEALPLVGEGRAY-QNLGIPIIG-PTKELP--S---GGFSYQSLRGLLRDLRAGLVGLTL- 81 (396)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH-hhCCCceeC-CCCCCC--C---CCccCCCHHHHHHHHHhhHHHHHH-
Confidence 33344566777662 499999 77655432 111112222 444554 2 22321 1122222222 111111
Q ss_pred HHHHHhhh-cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEE-EEcCcchhhhhh-ccCCCcHHH-----HHHHHHH--
Q 015058 91 LLWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSL-SLGRRSHFV-----SIYRWIE-- 160 (414)
Q Consensus 91 l~~~l~~k-~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv-~~H~~~~~l~~~-~~~~~~~~~-----~i~~~~E-- 160 (414)
.-|++.++ .++||+|++-.- . +..+++++.|+|+++ -.|...+.+.+- .......+. ....| |
T Consensus 82 ~~~~~~~~~~~~p~~v~~~Gg-----~-v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n 154 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVGD-----I-VPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERW 154 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECc-----H-HHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHH
Confidence 11222222 139999988853 1 255566778999866 345443321000 000000000 01122 3
Q ss_pred HHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCcc
Q 015058 161 KYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADE 240 (414)
Q Consensus 161 k~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
+...+.||.+.+-.+...+.+.+ +|+++.++=|.-.+.+.+.. +.
T Consensus 155 ~l~~~~a~~v~~~~~~t~~~l~~-~g~k~~~vGnPv~d~l~~~~---~~------------------------------- 199 (396)
T TIGR03492 155 LMRSRRCLAVFVRDRLTARDLRR-QGVRASYLGNPMMDGLEPPE---RK------------------------------- 199 (396)
T ss_pred HhhchhhCEEeCCCHHHHHHHHH-CCCeEEEeCcCHHhcCcccc---cc-------------------------------
Confidence 56668999999999999999876 48887766554212121111 00
Q ss_pred ceeeeccccccccCCCCCeEEEEeccCCC--CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEE
Q 015058 241 TIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 318 (414)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~i~~vgrl~~--~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ 318 (414)
+++++.+.+++..|+-.+ .+++..+++|++.+.+ . +++.
T Consensus 200 -----------~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~---------------------------~-~~~~ 240 (396)
T TIGR03492 200 -----------PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD---------------------------S-QPFV 240 (396)
T ss_pred -----------ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh---------------------------C-CCeE
Confidence 122344456666666633 3466789999988854 2 5677
Q ss_pred EEE-EcCCCChHHHHHHHHHcCCC---------------cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHH
Q 015058 319 FII-TGKGPDKESYEEKIRRLRLK---------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVC 382 (414)
Q Consensus 319 liI-~G~G~~~e~l~~~i~~l~l~---------------~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~ 382 (414)
|++ +..+.+.+.+++..++.++. ++.+.. ..+|++.+|++||+.|+. +| ....
T Consensus 241 ~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~l~~ADlvI~r----SG----t~T~ 309 (396)
T TIGR03492 241 FLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLL---GRGAFAEILHWADLGIAM----AG----TATE 309 (396)
T ss_pred EEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEe---chHhHHHHHHhCCEEEEC----cC----HHHH
Confidence 765 43566778888888776664 256654 567899999999999964 23 3569
Q ss_pred HHHHcCCeEEEeee
Q 015058 383 YCWYSRYSLKLLWT 396 (414)
Q Consensus 383 Eama~G~Pvi~s~~ 396 (414)
|++++|+|+|....
T Consensus 310 E~a~lg~P~Ilip~ 323 (396)
T TIGR03492 310 QAVGLGKPVIQLPG 323 (396)
T ss_pred HHHHhCCCEEEEeC
Confidence 99999999999763
No 102
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.88 E-value=9.7e-07 Score=90.16 Aligned_cols=293 Identities=16% Similarity=0.085 Sum_probs=151.5
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCC-----cccccCCCeEEEEeecCCCCCCCCCCchHHHHH
Q 015058 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPH-----AAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~-----~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~ 80 (414)
++++++.+ -..-..|.-....|.+..++++.++..+..... ....+..++.+..-. ....... ..-.....
T Consensus 2 ki~~v~Gt-Rpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~ 77 (365)
T TIGR03568 2 KICVVTGT-RADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKI--EILLDSD-SNAGMAKS 77 (365)
T ss_pred eEEEEEec-ChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCcc--ccccCCC-CCCCHHHH
Confidence 34444433 444456666778887744789888876653211 111222333331111 0000000 00011122
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHH
Q 015058 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (414)
Q Consensus 81 l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~E 160 (414)
....+..+-.++ +..+||+|+++... .+.+++.+++..+++|++. +|.-..+ ++. .--.. .
T Consensus 78 ~~~~~~~~~~~~-----~~~~Pd~vlv~GD~--~~~la~alaA~~~~IPv~H-veaG~rs-----~~~---~eE~~---r 138 (365)
T TIGR03568 78 MGLTIIGFSDAF-----ERLKPDLVVVLGDR--FEMLAAAIAAALLNIPIAH-IHGGEVT-----EGA---IDESI---R 138 (365)
T ss_pred HHHHHHHHHHHH-----HHhCCCEEEEeCCc--hHHHHHHHHHHHhCCcEEE-EECCccC-----CCC---chHHH---H
Confidence 222233322222 23799999999752 4456677888889999973 3332111 111 11111 1
Q ss_pred HHHhccCCEEEEeCHHHHHHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCC
Q 015058 161 KYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQK 237 (414)
Q Consensus 161 k~~~k~ad~ii~vS~~~~~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (414)
+...+.||..++.++..++.|.+. |.+ +.++-|...+.+.......+.++.+++
T Consensus 139 ~~i~~la~l~f~~t~~~~~~L~~e-g~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~l---------------------- 195 (365)
T TIGR03568 139 HAITKLSHLHFVATEEYRQRVIQM-GEDPDRVFNVGSPGLDNILSLDLLSKEELEEKL---------------------- 195 (365)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHc-CCCCCcEEEECCcHHHHHHhhhccCHHHHHHHh----------------------
Confidence 344577888899999999988764 764 555544422222111000123344333
Q ss_pred CccceeeeccccccccCCCCCeEEEEeccCC--CCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCC
Q 015058 238 ADETIFTSLAGIDVFLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 315 (414)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~--~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (414)
+++++++++++..-+-+ ...+.+.+.+.++.+.+. ..
T Consensus 196 --------------gl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~---------------------------~~ 234 (365)
T TIGR03568 196 --------------GIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL---------------------------NK 234 (365)
T ss_pred --------------CCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh---------------------------cc
Confidence 23333344444443322 333334444444444331 11
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcC--CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 316 RLLFIITGKGPDKESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 316 ~i~liI~G~G~~~e~l~~~i~~l~--l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
++.++.-..+|..+.+.+.++++. ..+|.+.+ .++..++..+++.||++|. .+++ + +-||.+.|+|+|.
T Consensus 235 ~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~-~l~~~~~l~Ll~~a~~vit---dSSg---g--i~EA~~lg~Pvv~ 305 (365)
T TIGR03568 235 NYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFK-SLGQERYLSLLKNADAVIG---NSSS---G--IIEAPSFGVPTIN 305 (365)
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEEC-CCChHHHHHHHHhCCEEEE---cChh---H--HHhhhhcCCCEEe
Confidence 343333223354444555555543 34899997 8899999999999999994 2222 1 4799999999997
Q ss_pred e
Q 015058 394 L 394 (414)
Q Consensus 394 s 394 (414)
.
T Consensus 306 l 306 (365)
T TIGR03568 306 I 306 (365)
T ss_pred e
Confidence 3
No 103
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.79 E-value=5.7e-07 Score=88.39 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHH
Q 015058 257 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (414)
Q Consensus 257 ~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~ 336 (414)
.+.++++.|..... .++++++. .|+..++++|.+....
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~-------------------------------~~~~~~~v~g~~~~~~------- 229 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKA-------------------------------LPDYQFIVFGPNAADP------- 229 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHh-------------------------------CCCCeEEEEcCCcccc-------
Confidence 34588898888655 55666554 3567888887663111
Q ss_pred HcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 337 ~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
...||++.+ + ..++++.+|++||+.|+. .|. +.+.|++++|+|++..-..+
T Consensus 230 --~~~ni~~~~-~-~~~~~~~~m~~ad~vIs~----~G~---~t~~Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 230 --RPGNIHVRP-F-STPDFAELMAAADLVISK----GGY---TTISEALALGKPALVIPRPG 280 (318)
T ss_pred --cCCCEEEee-c-ChHHHHHHHHhCCEEEEC----CCH---HHHHHHHHcCCCEEEEeCCC
Confidence 134899886 2 348999999999999953 232 35899999999999877643
No 104
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.75 E-value=2.1e-06 Score=84.59 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=72.9
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCC-CChHHHHHHHHH
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKESYEEKIRR 337 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G-~~~e~l~~~i~~ 337 (414)
.++++.|...+.+....+++++..... ..++. +|+|.| +..+++++.++.
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~----------------------------~~~i~-vv~G~~~~~~~~l~~~~~~ 222 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQI----------------------------NISIT-LVTGSSNPNLDELKKFAKE 222 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhcccc----------------------------CceEE-EEECCCCcCHHHHHHHHHh
Confidence 478888888887766777887765421 11233 478877 677888888776
Q ss_pred cCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 338 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 338 l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
. .+|.+.+ +.++++.+|+.||++|+. .| +.++|++++|+|+|+..+
T Consensus 223 ~--~~i~~~~---~~~~m~~lm~~aDl~Is~----~G----~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 223 Y--PNIILFI---DVENMAELMNEADLAIGA----AG----STSWERCCLGLPSLAICL 268 (279)
T ss_pred C--CCEEEEe---CHHHHHHHHHHCCEEEEC----Cc----hHHHHHHHcCCCEEEEEe
Confidence 3 3788888 889999999999999963 12 468999999999998755
No 105
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.73 E-value=9.6e-07 Score=95.89 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=84.9
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh----
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---- 328 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~---- 328 (414)
++++.+ ++++++|++++||++.+++++..+.+-. + + +. .+++|++.|+|...
T Consensus 385 ~dpd~~-~ig~v~Rl~~yKr~dLil~~i~~l~~i~----~---------------~---~~-~pvq~V~~Gka~p~d~~g 440 (601)
T TIGR02094 385 LDPDVL-TIGFARRFATYKRADLIFRDLERLARIL----N---------------N---PE-RPVQIVFAGKAHPADGEG 440 (601)
T ss_pred cCCCCc-EEEEEEcchhhhhHHHHHHHHHHHHHHh----h---------------C---CC-CCeEEEEEEecCcccchH
Confidence 456775 8999999999999999999988886410 0 0 01 24999999999643
Q ss_pred ----HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEe-eccCCCCCCCchhHHHHHHcCCeEEEeee------
Q 015058 329 ----ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVC-LHTSSSGLDLPMKVCYCWYSRYSLKLLWT------ 396 (414)
Q Consensus 329 ----e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~-~~~s~~g~~lP~kl~Eama~G~Pvi~s~~------ 396 (414)
+.+.+++++-... +|.|+-+ -..+--..+++.||+++. |+...+ .=+..=+-||.-|-+.+++..
T Consensus 441 k~~i~~i~~la~~~~~~~kv~f~~~-Yd~~lA~~i~aG~Dv~L~~Psr~~E--acGtsqMka~~nGgL~~sv~DG~~~E~ 517 (601)
T TIGR02094 441 KEIIQRIVEFSKRPEFRGRIVFLEN-YDINLARYLVSGVDVWLNNPRRPLE--ASGTSGMKAAMNGVLNLSILDGWWGEG 517 (601)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcC-CCHHHHHHHhhhheeEEeCCCCCcC--CchHHHHHHHHcCCceeecccCccccc
Confidence 3344444432344 8999853 366677789999999997 543121 112245678888988887643
Q ss_pred -CCcccchhh
Q 015058 397 -CSVVGCLFV 405 (414)
Q Consensus 397 -~~~~~~~~~ 405 (414)
.+.+|-.|-
T Consensus 518 ~~~~nGf~f~ 527 (601)
T TIGR02094 518 YDGDNGWAIG 527 (601)
T ss_pred CCCCcEEEEC
Confidence 345776664
No 106
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.50 E-value=3.3e-05 Score=76.99 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=38.9
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++.+.+ |.+ +|+..+|+.||++|+- .|. +.+.|++++|+|++..-..+
T Consensus 230 ~v~~~~-~~~-~~~~~~l~~ad~vI~~----~G~---~t~~Ea~~~g~P~l~ip~~~ 277 (321)
T TIGR00661 230 NVEIRR-ITT-DNFKELIKNAELVITH----GGF---SLISEALSLGKPLIVIPDLG 277 (321)
T ss_pred CEEEEE-CCh-HHHHHHHHhCCEEEEC----CCh---HHHHHHHHcCCCEEEEcCCC
Confidence 889886 766 7999999999999963 222 25899999999999977654
No 107
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.45 E-value=8.6e-06 Score=87.52 Aligned_cols=266 Identities=17% Similarity=0.102 Sum_probs=133.5
Q ss_pred CCcE-EEEeCCCCchHHHHHHHHHhh-cCCeEEEEEcCcc--hhhhh--------hc-cCCC----cHHHHHHHHHHHHH
Q 015058 101 SPDV-FLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFG--YTLLS--------LS-LGRR----SHFVSIYRWIEKYY 163 (414)
Q Consensus 101 ~~Dv-vh~~~pp~~~~~~~~~la~~~-~~~~~Iv~~H~~~--~~l~~--------~~-~~~~----~~~~~i~~~~Ek~~ 163 (414)
++.| .|+|-+ .+++...++++. ..+..|+|-|-.. -++-+ +. ++.+ .+-...-..+||..
T Consensus 142 ~~~ViaHfHEW---maG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraa 218 (633)
T PF05693_consen 142 KPKVIAHFHEW---MAGVGLLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAA 218 (633)
T ss_dssp SEEEEEEEESG---GGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHH
T ss_pred CCcEEEEechH---hHhHHHHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHH
Confidence 4554 488887 444433333332 3677899999752 11100 00 0000 00011224679999
Q ss_pred hccCCEEEEeCHHHHHHHHHhhCCcE-EEecCC-CCCCcCCCChH-HH-HHHHHHhhhhccCCCCccccccCCCCCCCCc
Q 015058 164 GKMANGCLCVTQAMQHELAQNWGIKA-TVLYDQ-PPEFFHPTSLE-EK-HELFCRLNKILHQPLGVQDCVSNGMEGQKAD 239 (414)
Q Consensus 164 ~k~ad~ii~vS~~~~~~l~~~~gi~i-~vI~n~-~~~~f~p~~~~-~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (414)
.+.||...+||+-.+.+-+...+.+. .|+||| +.++|.....- .+ ...|+++.. ++
T Consensus 219 A~~AdvFTTVSeITa~Ea~~LL~r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~----------fv---------- 278 (633)
T PF05693_consen 219 AHYADVFTTVSEITAKEAEHLLKRKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHE----------FV---------- 278 (633)
T ss_dssp HHHSSEEEESSHHHHHHHHHHHSS--SEE----B-GGGTSSTTHHHHHHHHHHHHHHH----------HH----------
T ss_pred HHhcCeeeehhhhHHHHHHHHhCCCCCEEcCCCccccccccchHHHHHHHHHHHHHHH----------HH----------
Confidence 99999999999999988877666654 788999 66666444321 11 223334321 11
Q ss_pred cceeeeccccccccCCCCCeEEEEeccCC-CCCChHHHHHHHHHhHHHHhhhhccCC--------------Cchhhh---
Q 015058 240 ETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDD--------------STNEEV--- 301 (414)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~i~~vgrl~-~~Kg~~~LleA~~~l~~~~~~~~~~~~--------------~~~~~~--- 301 (414)
+..| .|.+.+++++.++++++||.. ..||+|.+|||+.++...... ..++ +-|-|+
T Consensus 279 ~~~f----~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~--~~~~~tVVaFii~pa~~~~~~ve~l~~ 352 (633)
T PF05693_consen 279 RGHF----YGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQ--AGSDKTVVAFIIVPAKTNSFNVESLKG 352 (633)
T ss_dssp HHHS----TT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHH--TT-S-EEEEEEE---SEEEE-HHHHHH
T ss_pred HHHh----cccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhh--cCCCCeEEEEEEecCccCCcCHHHHhh
Confidence 0111 233345556667888999997 679999999999998753210 0111 111111
Q ss_pred ----------------------h----------------------hhh-hcCCccCCCCcEEEEEEcCCCChHHHHHHHH
Q 015058 302 ----------------------F----------------------LKE-ISDGKQYLYPRLLFIITGKGPDKESYEEKIR 336 (414)
Q Consensus 302 ----------------------~----------------------~~~-~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~ 336 (414)
| ||. |-.-+....|-+.-.-.- -...+.+-..++
T Consensus 353 ~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~-d~~~DpILn~ir 431 (633)
T PF05693_consen 353 QAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLH-DDSNDPILNMIR 431 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEET-TTTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCC-CCccCHHHHHHH
Confidence 1 010 000011122222111111 234567888899
Q ss_pred HcCCC-------cEEEecCCCC------hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc
Q 015058 337 RLRLK-------RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV 399 (414)
Q Consensus 337 ~l~l~-------~V~f~g~~v~------~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~ 399 (414)
++++. .|+|...+++ .-+|.+++..||++|+|+.- |..+-.-+||.+.|+|.|+|+.+|.
T Consensus 432 r~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYY---EPWGYTPlE~~a~gVPsITTnLsGF 504 (633)
T PF05693_consen 432 RLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYY---EPWGYTPLECTAFGVPSITTNLSGF 504 (633)
T ss_dssp HTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SS---BSS-HHHHHHHHTT--EEEETTBHH
T ss_pred hCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeecccc---ccccCChHHHhhcCCceeeccchhH
Confidence 98882 4777755544 45899999999999998542 3334456999999999999998874
No 108
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.39 E-value=7.7e-05 Score=75.79 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCC-CCC-C---------CC-
Q 015058 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTI-PRG-L---------PK- 73 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~-~---------~~- 73 (414)
|+.++..+..|.-..+...+..|.++ ||+|+++|.... ....+..|++++.++..... ... . ..
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~---~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEF---ADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGL 77 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhH---HHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHH
Confidence 56667777777778888899999996 999999997642 22334566776665520000 000 0 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCc
Q 015058 74 VLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (414)
Q Consensus 74 ~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~ 137 (414)
...............+.-.+..+ +..+||+|+++.. ...+..++...++|++...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~pDlvi~d~~-----~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 78 LLGALRLLRREAEAMLDDLVAAA-RDWGPDLVVADPL-----AFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccCCCEEEeCcH-----HHHHHHHHHHhCCCeEEeeccc
Confidence 00001111111111111122222 2479999887742 2334555667899998866653
No 109
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=0.00018 Score=74.61 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=128.0
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.+||++++.-.-.+|..+ .-.+.+++|+++-.--... .++. . ++-.+.+.+.+.+..|.|+++|+..++
T Consensus 122 ~~P~l~Ii~EtElWPnli---~e~~~~~~p~~LvNaRLS~----rS~~---~-y~k~~~~~~~~~~~i~li~aQse~D~~ 190 (419)
T COG1519 122 WRPKLLIIMETELWPNLI---NELKRRGIPLVLVNARLSD----RSFA---R-YAKLKFLARLLFKNIDLILAQSEEDAQ 190 (419)
T ss_pred cCCCEEEEEeccccHHHH---HHHHHcCCCEEEEeeeech----hhhH---H-HHHHHHHHHHHHHhcceeeecCHHHHH
Confidence 799987776543344433 2245678998763211110 0111 1 122233345556889999999999999
Q ss_pred HHHHhhCCc-EEEecCCCCCCcC-C--CChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCC
Q 015058 180 ELAQNWGIK-ATVLYDQPPEFFH-P--TSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKP 255 (414)
Q Consensus 180 ~l~~~~gi~-i~vI~n~~~~~f~-p--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 255 (414)
.+.+. |.+ +.+.-|- .++. | ....+...++.+ ++.
T Consensus 191 Rf~~L-Ga~~v~v~GNl--Kfd~~~~~~~~~~~~~~r~~--------------------------------------l~~ 229 (419)
T COG1519 191 RFRSL-GAKPVVVTGNL--KFDIEPPPQLAAELAALRRQ--------------------------------------LGG 229 (419)
T ss_pred HHHhc-CCcceEEecce--eecCCCChhhHHHHHHHHHh--------------------------------------cCC
Confidence 99875 877 4544443 2221 1 222223334433 222
Q ss_pred CCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh-HHHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEK 334 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~-e~l~~~ 334 (414)
.||..|.-+ . .+..-+.+++|.+.+++ .+||.+++++-.=|++ +..+++
T Consensus 230 ~r~v~iaaS-T--H~GEeei~l~~~~~l~~---------------------------~~~~~llIlVPRHpERf~~v~~l 279 (419)
T COG1519 230 HRPVWVAAS-T--HEGEEEIILDAHQALKK---------------------------QFPNLLLILVPRHPERFKAVENL 279 (419)
T ss_pred CCceEEEec-C--CCchHHHHHHHHHHHHh---------------------------hCCCceEEEecCChhhHHHHHHH
Confidence 265333333 3 23344678999999987 4789999999888876 689999
Q ss_pred HHHcCCCcEEEecC-CC----------ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 335 IRRLRLKRVAFRTM-WL----------SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 335 i~~l~l~~V~f~g~-~v----------~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
+++.|++...+..+ .. +--++-.+|+.||+..+- .|-...| +--++|+.++|+|||..
T Consensus 280 ~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG-GSlv~~G-GHN~LEpa~~~~pvi~G 348 (419)
T COG1519 280 LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVG-GSLVPIG-GHNPLEPAAFGTPVIFG 348 (419)
T ss_pred HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEEC-CcccCCC-CCChhhHHHcCCCEEeC
Confidence 99999875554432 11 123688999999996532 1111122 23479999999999973
No 110
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.21 E-value=1.9e-05 Score=82.92 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=72.3
Q ss_pred HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCCh
Q 015058 274 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSA 352 (414)
Q Consensus 274 ~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~-~e~l~~~i~~l~l~~V~f~g~~v~~ 352 (414)
+.+|++++.+.+ ..|+++|-| |.|.+ .++|.++ .+. ++|+...++ ..
T Consensus 291 s~~I~~i~~Lv~---------------------------~lPd~~f~I-ga~te~s~kL~~L-~~y--~nvvly~~~-~~ 338 (438)
T TIGR02919 291 SDQIEHLEEIVQ---------------------------ALPDYHFHI-AALTEMSSKLMSL-DKY--DNVKLYPNI-TT 338 (438)
T ss_pred HHHHHHHHHHHH---------------------------hCCCcEEEE-EecCcccHHHHHH-Hhc--CCcEEECCc-Ch
Confidence 788999999987 379999999 88877 6788887 665 655555423 45
Q ss_pred hhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 353 EDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 353 ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
.++.++|..||+++.. +.++++++.+.||++.|+||++.++.
T Consensus 339 ~~l~~ly~~~dlyLdi---n~~e~~~~al~eA~~~G~pI~afd~t 380 (438)
T TIGR02919 339 QKIQELYQTCDIYLDI---NHGNEILNAVRRAFEYNLLILGFEET 380 (438)
T ss_pred HHHHHHHHhccEEEEc---cccccHHHHHHHHHHcCCcEEEEecc
Confidence 6899999999999953 34678999999999999999997765
No 111
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.21 E-value=8.2e-05 Score=75.42 Aligned_cols=216 Identities=19% Similarity=0.278 Sum_probs=124.9
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+-+-++.|.-. -+.++++.+..+++..++ .||-++..+.+ ...++..++...+.+...++...|.+ ++...
T Consensus 76 ~~r~~kff~HGqF-n~~lwlaLl~g~~~~~k~--~WhIWGaDLYe---~~~~~k~rlfy~lRr~aq~rvg~V~a-t~GDl 148 (360)
T PF07429_consen 76 ADRADKFFLHGQF-NPWLWLALLFGKIKLKKC--YWHIWGADLYE---DSRSLKFRLFYFLRRLAQKRVGHVFA-TRGDL 148 (360)
T ss_pred hCccceEEEeccC-cHHHHHHHHcCCccccce--EEEEeCchhhc---cccccchhHHHHHHHHHHhhcCeEEE-EcchH
Confidence 3577766666432 145566666665554444 47777655443 12333455666777888888888876 56666
Q ss_pred HHHHHhhCCc-EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCC
Q 015058 179 HELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNR 257 (414)
Q Consensus 179 ~~l~~~~gi~-i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (414)
...++.++.. ...+ |-|+.-+ ..+. . . +.....+. ..
T Consensus 149 ~~~~q~~~~~~~~~l-------yfPt~m~--~~~~-~-~-----------------~~~~~~~~--------------~l 186 (360)
T PF07429_consen 149 AYFQQRYPRVPASLL-------YFPTRMD--PALT-L-S-----------------EKNKKNKG--------------KL 186 (360)
T ss_pred HHHHHHcCCCCceEE-------EcCCCCc--hhhh-c-c-----------------ccccCCCC--------------ce
Confidence 6788877533 3333 2333211 0110 0 0 00000000 11
Q ss_pred CeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE-EcCCCC----hHHHH
Q 015058 258 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPD----KESYE 332 (414)
Q Consensus 258 ~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI-~G~G~~----~e~l~ 332 (414)
.++|+++| ++..++ +||++.+++. ...++++++ .|-|.. .++++
T Consensus 187 tILvGNSg--d~sNnH---ieaL~~L~~~--------------------------~~~~~kIivPLsYg~~n~~Yi~~V~ 235 (360)
T PF07429_consen 187 TILVGNSG--DPSNNH---IEALEALKQQ--------------------------FGDDVKIIVPLSYGANNQAYIQQVI 235 (360)
T ss_pred EEEEcCCC--CCCccH---HHHHHHHHHh--------------------------cCCCeEEEEECCCCCchHHHHHHHH
Confidence 13444444 345566 4555555432 234688776 666653 34444
Q ss_pred HHHHHc-CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 333 EKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 333 ~~i~~l-~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+..+++ +-+++..+..++|-+||-.+|+.||++++.|.-.-|. + -++=.+++|+||+.+...
T Consensus 236 ~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgi--G-nI~lLl~~G~~v~L~~~n 298 (360)
T PF07429_consen 236 QAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGI--G-NICLLLQLGKKVFLSRDN 298 (360)
T ss_pred HHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhH--h-HHHHHHHcCCeEEEecCC
Confidence 555554 3347888877999999999999999999876544444 3 488899999999987654
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.19 E-value=0.00023 Score=73.33 Aligned_cols=282 Identities=17% Similarity=0.179 Sum_probs=153.3
Q ss_pred EEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEE-EEeecCCCCCCCCCCchHHHHHHHHHHHH
Q 015058 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHI-HTMTQWPTIPRGLPKVLKPVLLLLKPLIQ 87 (414)
Q Consensus 9 v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i-~~v~~~~~~~~~~~~~~~~~~~l~k~l~~ 87 (414)
.++.|+-+++---...+.+|.++ .-++.+.+-++.. .+..|++. ..+. ....-++-...+.+..+++...+
T Consensus 2 ~i~AGE~SGD~~ga~Li~~Lk~~-~p~~~~~GvGG~~-----M~~~G~~~l~d~~--~lsvmG~~Evl~~l~~~~~~~~~ 73 (373)
T PF02684_consen 2 FISAGEASGDLHGARLIRALKAR-DPDIEFYGVGGPR-----MQAAGVESLFDME--ELSVMGFVEVLKKLPKLKRLFRK 73 (373)
T ss_pred EEEeeCccHHHHHHHHHHHHHhh-CCCcEEEEEechH-----HHhCCCceecchH--HhhhccHHHHHHHHHHHHHHHHH
Confidence 35566666666666778888776 5678888776542 11234332 1222 00000110111111222222222
Q ss_pred HHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCe--EEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhc
Q 015058 88 FFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA--FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (414)
Q Consensus 88 ~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~--~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k 165 (414)
.. .. .+..+||+++.-+.|.. ++-+++.+++ ++++ +|+-+---.|. ++ .+. + +.+.+
T Consensus 74 ~~----~~-~~~~~pd~vIlID~pgF-Nlrlak~lk~-~~~~~~viyYI~PqvWA-----Wr-~~R---~-----~~i~~ 132 (373)
T PF02684_consen 74 LV----ER-IKEEKPDVVILIDYPGF-NLRLAKKLKK-RGIPIKVIYYISPQVWA-----WR-PGR---A-----KKIKK 132 (373)
T ss_pred HH----HH-HHHcCCCEEEEeCCCCc-cHHHHHHHHH-hCCCceEEEEECCceee-----eC-ccH---H-----HHHHH
Confidence 11 11 13589998877776544 3445555554 3444 65433221110 21 111 1 12335
Q ss_pred cCCEEEEeCHHHHHHHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeee
Q 015058 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTS 245 (414)
Q Consensus 166 ~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (414)
.+|.++|+=+--.++..+. |++++.+=|.-.+...+... +.+.++++
T Consensus 133 ~~D~ll~ifPFE~~~y~~~-g~~~~~VGHPl~d~~~~~~~--~~~~~~~~------------------------------ 179 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFYKKH-GVPVTYVGHPLLDEVKPEPD--RAEAREKL------------------------------ 179 (373)
T ss_pred HHhheeECCcccHHHHhcc-CCCeEEECCcchhhhccCCC--HHHHHHhc------------------------------
Confidence 6799999999888888764 88877775552233333321 12223221
Q ss_pred ccccccccCCCCCeEEEEecc-CCCC-CChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEc
Q 015058 246 LAGIDVFLKPNRPALVVSSTS-WTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG 323 (414)
Q Consensus 246 ~~~~~~~l~~~~~~~i~~vgr-l~~~-Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G 323 (414)
++++++.+.+.-|+ -++- +.+..+++|++.+++ .+|+++|++..
T Consensus 180 -------l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~---------------------------~~p~l~fvvp~ 225 (373)
T PF02684_consen 180 -------LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK---------------------------QRPDLQFVVPV 225 (373)
T ss_pred -------CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH---------------------------hCCCeEEEEec
Confidence 34455555555443 2232 344788999999887 47899999876
Q ss_pred CCCChHH-HHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 324 KGPDKES-YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 324 ~G~~~e~-l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
--...++ +++..++.+.. +...- ..++-...|++||+.+.. || ++.+|++..|+|.|...--+
T Consensus 226 a~~~~~~~i~~~~~~~~~~-~~~~~---~~~~~~~~m~~ad~al~~----SG----TaTLE~Al~g~P~Vv~Yk~~ 289 (373)
T PF02684_consen 226 APEVHEELIEEILAEYPPD-VSIVI---IEGESYDAMAAADAALAA----SG----TATLEAALLGVPMVVAYKVS 289 (373)
T ss_pred CCHHHHHHHHHHHHhhCCC-CeEEE---cCCchHHHHHhCcchhhc----CC----HHHHHHHHhCCCEEEEEcCc
Confidence 5444444 55555555444 22221 244566689999998853 33 37899999999999765433
No 113
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.14 E-value=0.00016 Score=72.46 Aligned_cols=215 Identities=18% Similarity=0.188 Sum_probs=124.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
.+.+=+++|.-. -+.++++.+..+.+..+ +.||-++..+.. ...++..+++..+.|...++...+++ ++....
T Consensus 38 ~r~~rff~HGqF-n~~lwlall~g~~~~~q--~yWhiWGaDLYe---~~~~lk~rlfy~lRR~aq~rvg~v~a-trGD~~ 110 (322)
T PRK02797 38 NRAQRFFLHGQF-NPTLWLALLSGKIKPKQ--FYWHIWGADLYE---ESKGLKFRLFYPLRRLAQKRVGHVFA-TRGDLS 110 (322)
T ss_pred CccceEEEecCC-CHHHHHHHHhCCcCccc--eEEEEEChhhhh---cccchhHHHHHHHHHHHHhhcCeEEE-ecchHH
Confidence 566656666432 14555565555444333 348877665542 13455567777888888899999999 554444
Q ss_pred H-HHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCC
Q 015058 180 E-LAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRP 258 (414)
Q Consensus 180 ~-l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (414)
+ -+++++.+...+| -|+.... .+. . ++........+|
T Consensus 111 ~~a~~~~~v~~~lly-------fpt~m~~--~l~-~------------------~~~~~~~~~~~t-------------- 148 (322)
T PRK02797 111 YFAQRHPKVPGSLLY-------FPTRMDP--SLN-T------------------MANDRQRAGKMT-------------- 148 (322)
T ss_pred HHHHhcCCCCccEEe-------cCCcchh--hhc-c------------------ccccccCCCceE--------------
Confidence 5 4455577644332 2322110 000 0 000000001111
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE-EcC--CC--ChHHHHH
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGK--GP--DKESYEE 333 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI-~G~--G~--~~e~l~~ 333 (414)
++|+++| +|-.++-..|++++... ..++++++ .|- |. +.+++++
T Consensus 149 IlvGNSg--d~SN~Hie~L~~l~~~~-----------------------------~~~v~ii~PlsYp~gn~~Yi~~V~~ 197 (322)
T PRK02797 149 ILVGNSG--DRSNRHIEALRALHQQF-----------------------------GDNVKIIVPMGYPANNQAYIEEVRQ 197 (322)
T ss_pred EEEeCCC--CCcccHHHHHHHHHHHh-----------------------------CCCeEEEEECCcCCCCHHHHHHHHH
Confidence 2333433 34556645555544432 35788877 555 32 3345555
Q ss_pred HHHHcCC-CcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 334 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 334 ~i~~l~l-~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
..+++-- ++++.+..+++-+||..+|+.||++++.|.-.-|.| -+|=.++.|+||+.+...
T Consensus 198 ~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiG---nl~lLi~~G~~v~l~r~n 259 (322)
T PRK02797 198 AGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIG---TLCLLIQLGKPVVLSRDN 259 (322)
T ss_pred HHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHh---HHHHHHHCCCcEEEecCC
Confidence 5566654 489998889999999999999999998765444443 478889999999986543
No 114
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.10 E-value=0.00083 Score=68.41 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=44.2
Q ss_pred EEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 319 FIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 319 liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++.+|.|...+.+++ + -.+|.+.+ |++.. .+|..||++|+. .|. ..+.||+++|+|+|+.-..+
T Consensus 258 i~~~g~~~~~~~~~~----~-~~~v~~~~-~~p~~---~ll~~~~~~I~h----gG~---~t~~Eal~~G~P~v~~p~~~ 321 (392)
T TIGR01426 258 VLSVGRGVDPADLGE----L-PPNVEVRQ-WVPQL---EILKKADAFITH----GGM---NSTMEALFNGVPMVAVPQGA 321 (392)
T ss_pred EEEECCCCChhHhcc----C-CCCeEEeC-CCCHH---HHHhhCCEEEEC----CCc---hHHHHHHHhCCCEEecCCcc
Confidence 445777765443322 1 13888886 88864 578999999952 222 26899999999999965544
Q ss_pred c
Q 015058 399 V 399 (414)
Q Consensus 399 ~ 399 (414)
+
T Consensus 322 d 322 (392)
T TIGR01426 322 D 322 (392)
T ss_pred c
Confidence 3
No 115
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.09 E-value=3.2e-05 Score=78.68 Aligned_cols=209 Identities=19% Similarity=0.121 Sum_probs=109.0
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+|+++.-. ...+++.+++...++| |+++|.=..+. ..+.+ ..--..| +...+.||.-+|.++..+
T Consensus 65 ~~~Pd~Vlv~GD~--~~~la~alaA~~~~ip-v~HieaGlRs~-d~~~g---~~de~~R---~~i~~la~lhf~~t~~~~ 134 (346)
T PF02350_consen 65 REKPDAVLVLGDR--NEALAAALAAFYLNIP-VAHIEAGLRSG-DRTEG---MPDEINR---HAIDKLAHLHFAPTEEAR 134 (346)
T ss_dssp HHT-SEEEEETTS--HHHHHHHHHHHHTT-E-EEEES-----S--TTSS---TTHHHHH---HHHHHH-SEEEESSHHHH
T ss_pred hcCCCEEEEEcCC--chHHHHHHHHHHhCCC-EEEecCCCCcc-ccCCC---Cchhhhh---hhhhhhhhhhccCCHHHH
Confidence 3799999999762 4556777888889999 44555421100 00011 1122222 355689999999999999
Q ss_pred HHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeecccccccc--
Q 015058 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFL-- 253 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 253 (414)
+.|.+. |++ +.++=|.-.+.+ ...+.+.. ..+. ..++
T Consensus 135 ~~L~~~-G~~~~rI~~vG~~~~D~l--------~~~~~~~~------------------------~~~~-----~~~i~~ 176 (346)
T PF02350_consen 135 ERLLQE-GEPPERIFVVGNPGIDAL--------LQNKEEIE------------------------EKYK-----NSGILQ 176 (346)
T ss_dssp HHHHHT-T--GGGEEE---HHHHHH--------HHHHHTTC------------------------C-HH-----HHHHHH
T ss_pred HHHHhc-CCCCCeEEEEChHHHHHH--------HHhHHHHh------------------------hhhh-----hHHHHh
Confidence 999886 885 555522211111 00000000 0000 0011
Q ss_pred CCCCCeEEEEeccCCC---CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC--CCCh
Q 015058 254 KPNRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK--GPDK 328 (414)
Q Consensus 254 ~~~~~~~i~~vgrl~~---~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~--G~~~ 328 (414)
...+++++++.=+.+. .+....+.++++.+.+ .+++.+++..- =+..
T Consensus 177 ~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~----------------------------~~~~~vi~~~hn~p~~~ 228 (346)
T PF02350_consen 177 DAPKPYILVTLHPVTNEDNPERLEQILEALKALAE----------------------------RQNVPVIFPLHNNPRGS 228 (346)
T ss_dssp CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHH----------------------------HTTEEEEEE--S-HHHH
T ss_pred ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHh----------------------------cCCCcEEEEecCCchHH
Confidence 1233455555533322 2334566666666664 24688887653 1234
Q ss_pred HHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHH-HHHHcCCeEEEee
Q 015058 329 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVC-YCWYSRYSLKLLW 395 (414)
Q Consensus 329 e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~-Eama~G~Pvi~s~ 395 (414)
..+.+.++++ ++|++.. .++..++..+++.|++.|. .|+| +. ||.+.|+|+|...
T Consensus 229 ~~i~~~l~~~--~~v~~~~-~l~~~~~l~ll~~a~~vvg---dSsG------I~eEa~~lg~P~v~iR 284 (346)
T PF02350_consen 229 DIIIEKLKKY--DNVRLIE-PLGYEEYLSLLKNADLVVG---DSSG------IQEEAPSLGKPVVNIR 284 (346)
T ss_dssp HHHHHHHTT---TTEEEE-----HHHHHHHHHHESEEEE---SSHH------HHHHGGGGT--EEECS
T ss_pred HHHHHHhccc--CCEEEEC-CCCHHHHHHHHhcceEEEE---cCcc------HHHHHHHhCCeEEEec
Confidence 4555555555 4899996 7899999999999999983 2323 56 9999999999873
No 116
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.00049 Score=70.65 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=148.7
Q ss_pred EEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEE-EeecCCCCCCCCCCchHHHHHHHHHHHHH
Q 015058 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH-TMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (414)
Q Consensus 10 ~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~-~v~~~~~~~~~~~~~~~~~~~l~k~l~~~ 88 (414)
++.|+-+++---....++|-.+-+ +|.+++-++.. . +..|++.. .+. ....-++-.....+..+++...+.
T Consensus 6 i~AGE~SGDllGa~LikaLk~~~~-~~efvGvgG~~-m----~aeG~~sl~~~~--elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 6 LSAGEASGDLLGAGLIKALKARYP-DVEFVGVGGEK-M----EAEGLESLFDME--ELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred EEecccchhhHHHHHHHHHHhhCC-CeEEEEeccHH-H----HhccCccccCHH--HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555666556667778877634 89999877543 1 11222111 011 000000111112222222222222
Q ss_pred HHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhc-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccC
Q 015058 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (414)
Q Consensus 89 ~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~a 167 (414)
... + ...+||+++.-+.|... .-++..+++.. .+|+|.-+--..|. +... |. . .+.+.+
T Consensus 78 ~~~----i-~~~kpD~~i~IDsPdFn-l~vak~lrk~~p~i~iihYV~PsVWA-----Wr~~----Ra-~----~i~~~~ 137 (381)
T COG0763 78 VRY----I-LANKPDVLILIDSPDFN-LRVAKKLRKAGPKIKIIHYVSPSVWA-----WRPK----RA-V----KIAKYV 137 (381)
T ss_pred HHH----H-HhcCCCEEEEeCCCCCc-hHHHHHHHHhCCCCCeEEEECcceee-----echh----hH-H----HHHHHh
Confidence 111 1 24899998888776553 33444444432 47877543332221 1111 11 1 222567
Q ss_pred CEEEEeCHHHHHHHHHhhCCcEEEecCC--CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeee
Q 015058 168 NGCLCVTQAMQHELAQNWGIKATVLYDQ--PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTS 245 (414)
Q Consensus 168 d~ii~vS~~~~~~l~~~~gi~i~vI~n~--~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (414)
|.++|+=+-..++..+ +|.+.+.|-+. |...+.+ .+.+.+++++
T Consensus 138 D~lLailPFE~~~y~k-~g~~~~yVGHpl~d~i~~~~----~r~~ar~~l~----------------------------- 183 (381)
T COG0763 138 DHLLAILPFEPAFYDK-FGLPCTYVGHPLADEIPLLP----DREAAREKLG----------------------------- 183 (381)
T ss_pred hHeeeecCCCHHHHHh-cCCCeEEeCChhhhhccccc----cHHHHHHHhC-----------------------------
Confidence 9999999988888765 58885555333 2111222 3455776654
Q ss_pred ccccccccCCCCCeEEEEeccCC-C-CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEc
Q 015058 246 LAGIDVFLKPNRPALVVSSTSWT-P-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG 323 (414)
Q Consensus 246 ~~~~~~~l~~~~~~~i~~vgrl~-~-~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G 323 (414)
++.+++.+.+.-|+=. + +.-...+.+|++.+++ .+|+++|++-=
T Consensus 184 -------~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~---------------------------~~~~~~~vlp~ 229 (381)
T COG0763 184 -------IDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA---------------------------RYPDLKFVLPL 229 (381)
T ss_pred -------CCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh---------------------------hCCCceEEEec
Confidence 3344445555555421 1 2234566777777775 47899999865
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 324 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 324 ~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
--+..+.+++...+...-..... +...+-.+.+.+||+.+.. || ++.+|++.+|+|.|++.-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~aD~al~a----SG----T~tLE~aL~g~P~Vv~Yk 291 (381)
T COG0763 230 VNAKYRRIIEEALKWEVAGLSLI---LIDGEKRKAFAAADAALAA----SG----TATLEAALAGTPMVVAYK 291 (381)
T ss_pred CcHHHHHHHHHHhhccccCceEE---ecCchHHHHHHHhhHHHHh----cc----HHHHHHHHhCCCEEEEEe
Confidence 44443444433332221012222 2567778899999998743 23 378999999999998643
No 117
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.91 E-value=0.0013 Score=71.43 Aligned_cols=203 Identities=11% Similarity=0.026 Sum_probs=116.9
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCC--eEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRS--AFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~--~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~ 176 (414)
..+||+++.-+.|.. ++-+++.+++ .|+ |+|+-+---.|. ++ .+. + +.+.+.+|.++|+=+-
T Consensus 308 ~~kPD~vIlID~PgF-NlrLAK~lkk-~Gi~ipviyYVsPqVWA-----WR-~~R---i-----kki~k~vD~ll~IfPF 371 (608)
T PRK01021 308 KTNPRTVICIDFPDF-HFLLIKKLRK-RGYKGKIVHYVCPSIWA-----WR-PKR---K-----TILEKYLDLLLLILPF 371 (608)
T ss_pred hcCCCEEEEeCCCCC-CHHHHHHHHh-cCCCCCEEEEECcccee-----eC-cch---H-----HHHHHHhhhheecCcc
Confidence 479999887776544 3345666555 464 876533222221 21 211 1 1223567999999999
Q ss_pred HHHHHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCC
Q 015058 177 MQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPN 256 (414)
Q Consensus 177 ~~~~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (414)
..+..++ +|++++.+=+.-.+...+.. .+.+.+++++ ++++
T Consensus 372 E~~~y~~-~gv~v~yVGHPL~d~i~~~~--~~~~~r~~lg------------------------------------l~~~ 412 (608)
T PRK01021 372 EQNLFKD-SPLRTVYLGHPLVETISSFS--PNLSWKEQLH------------------------------------LPSD 412 (608)
T ss_pred CHHHHHh-cCCCeEEECCcHHhhcccCC--CHHHHHHHcC------------------------------------CCCC
Confidence 8988876 59997777555222222111 2234454533 3445
Q ss_pred CCeEEEEecc-CCC-CCChHHHHHHHH--HhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC-CCChHHH
Q 015058 257 RPALVVSSTS-WTP-DEDFGILLEAAL--MYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GPDKESY 331 (414)
Q Consensus 257 ~~~~i~~vgr-l~~-~Kg~~~LleA~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-G~~~e~l 331 (414)
++.+.+.-|+ -++ ....+.+++|++ .+. ++.+|++... +..++.+
T Consensus 413 ~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~------------------------------~~l~fvvp~a~~~~~~~i 462 (608)
T PRK01021 413 KPIVAAFPGSRRGDILRNLTIQVQAFLASSLA------------------------------STHQLLVSSANPKYDHLI 462 (608)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc------------------------------cCeEEEEecCchhhHHHH
Confidence 5544444443 222 234567777776 332 2578877532 2335677
Q ss_pred HHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 332 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 332 ~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
++.++..++-.+.+.. .+ +-.+++++||+.+.. || ++.+|++..|+|.|...--+
T Consensus 463 ~~~~~~~~~~~~~ii~---~~-~~~~~m~aaD~aLaa----SG----TaTLEaAL~g~PmVV~YK~s 517 (608)
T PRK01021 463 LEVLQQEGCLHSHIVP---SQ-FRYELMRECDCALAK----CG----TIVLETALNQTPTIVTCQLR 517 (608)
T ss_pred HHHHhhcCCCCeEEec---Cc-chHHHHHhcCeeeec----CC----HHHHHHHHhCCCEEEEEecC
Confidence 7777554422344442 22 236899999999853 23 47899999999999865443
No 118
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.89 E-value=0.001 Score=74.43 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=77.2
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh----
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---- 328 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~---- 328 (414)
++|+.+ +|++++|++++|+.+.+++.+..+.+ |+++ +..| ++|++.|+|...
T Consensus 474 ldpd~l-tigfarRfa~YKR~~Lil~dl~rl~~----il~~------------------~~~p-vQ~IfaGKAhP~d~~g 529 (778)
T cd04299 474 LDPNVL-TIGFARRFATYKRATLLLRDPERLKR----LLND------------------PERP-VQFIFAGKAHPADEPG 529 (778)
T ss_pred cCCCcc-EEeeeecchhhhhHHHHHHHHHHHHH----HhhC------------------CCCC-eEEEEEEecCccchHH
Confidence 556664 89999999999999999999888764 1111 1234 999999998521
Q ss_pred HHHHHHHHHc----CCC-cEEEecCCCChhhHHHHHhhccEEEeeccC---CCCCCCchhHHHHHHcCCeEEEeee
Q 015058 329 ESYEEKIRRL----RLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTS---SSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 329 e~l~~~i~~l----~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s---~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+++.+.+.++ ... +|.|+-++ ..+--..+++.||+.+.++.. .+|++ =+-||.-|.+-+++-.
T Consensus 530 K~iIk~i~~~a~~p~~~~kVvfle~Y-d~~lA~~LvaG~DvwLn~prrp~EAsGTS----gMKA~~NG~LnlSvlD 600 (778)
T cd04299 530 KELIQEIVEFSRRPEFRGRIVFLEDY-DMALARHLVQGVDVWLNTPRRPLEASGTS----GMKAALNGGLNLSVLD 600 (778)
T ss_pred HHHHHHHHHHHhCcCCCCcEEEEcCC-CHHHHHHHHhhhhhcccCCCCCCCCCccc----hHHHHHcCCeeeeccc
Confidence 2333333333 344 89998633 666677889999999965431 23432 3557778887776433
No 119
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.77 E-value=0.0012 Score=70.07 Aligned_cols=115 Identities=7% Similarity=-0.011 Sum_probs=79.2
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC-----CCC----hH
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-----GPD----KE 329 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-----G~~----~e 329 (414)
.+|+.+.|+..-||+..=++|++.+.++.+. ...++.|+-+.- .+. +.
T Consensus 256 ~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe-----------------------~~gkvvlvQia~psR~~v~~Y~~l~~ 312 (474)
T PRK10117 256 QNIFSVERLDYSKGLPERFLAYEALLEKYPQ-----------------------HHGKIRYTQIAPTSRGDVQAYQDIRH 312 (474)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHHhChh-----------------------hcCCEEEEEEcCCCCCccHHHHHHHH
Confidence 3899999999999999999999998764210 112466765542 222 23
Q ss_pred HHHHHHHHcC-------CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCe-----EEEeeeC
Q 015058 330 SYEEKIRRLR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYS-----LKLLWTC 397 (414)
Q Consensus 330 ~l~~~i~~l~-------l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~P-----vi~s~~~ 397 (414)
++++.+.+-+ ..-|.++...++++++..+|+.||++++. +.-.|+-.+.-||.||.-| +|.|...
T Consensus 313 ~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVT---plRDGMNLVAkEyva~q~~~~~GvLILSefA 389 (474)
T PRK10117 313 QLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT---PLRDGMNLVAKEYVAAQDPANPGVLVLSQFA 389 (474)
T ss_pred HHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEec---ccccccccccchheeeecCCCCccEEEeccc
Confidence 3444444422 22477776678999999999999999853 2234566688999999763 7777776
Q ss_pred Cc
Q 015058 398 SV 399 (414)
Q Consensus 398 ~~ 399 (414)
|.
T Consensus 390 Ga 391 (474)
T PRK10117 390 GA 391 (474)
T ss_pred ch
Confidence 64
No 120
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.72 E-value=0.0023 Score=72.54 Aligned_cols=101 Identities=11% Similarity=0.073 Sum_probs=73.1
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCc----EEEEEEc-----CCCChH
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITG-----KGPDKE 329 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----i~liI~G-----~G~~~e 329 (414)
.+|+.+.|+..-||+..=++|++.+.++ +|+ +.|+-+. ++++.+
T Consensus 340 ~~ilgVDrlD~~KGi~~kl~A~e~~L~~---------------------------~P~~~gkvvlvQia~psr~~~~~y~ 392 (854)
T PLN02205 340 IMLLGVDDMDIFKGISLKLLAMEQLLMQ---------------------------HPEWQGKVVLVQIANPARGKGKDVK 392 (854)
T ss_pred EEEEEccCcccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEecCCCcccHHHH
Confidence 4999999999999999999999998763 443 4566554 344444
Q ss_pred HHH----HHHHHc-------CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCC
Q 015058 330 SYE----EKIRRL-------RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRY 389 (414)
Q Consensus 330 ~l~----~~i~~l-------~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~ 389 (414)
+++ +.+.+- +..-|.++...++.+++..+|+.||++++. +.-.|+-.+..||.+|..
T Consensus 393 ~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT---~lRDGMNLva~Eyia~~~ 460 (854)
T PLN02205 393 EVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVT---AVRDGMNLIPYEYIISRQ 460 (854)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEec---cccccccccchheeEEcc
Confidence 444 444432 223578886578999999999999999853 223456667899999875
No 121
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.65 E-value=0.0054 Score=61.23 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecc-CCCCCCh--HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHH
Q 015058 254 KPNRPALVVSSTS-WTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 330 (414)
Q Consensus 254 ~~~~~~~i~~vgr-l~~~Kg~--~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~ 330 (414)
.++++++++..|. +.+.|.- +...+.++.+.+ .+.+++++|...+++.
T Consensus 171 ~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-----------------------------~~~~ivl~G~~~e~~~ 221 (334)
T TIGR02195 171 DTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-----------------------------QGYQVVLFGSAKDHPA 221 (334)
T ss_pred CCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-----------------------------CCCEEEEEEChhhHHH
Confidence 3445667777665 4455544 477777766653 1467888987666665
Q ss_pred HHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 331 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 331 l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
.++..+..+-..+.+.| ..+-.++..+++.||++|+..+ | |+=+ |-|.|+|+|+.
T Consensus 222 ~~~i~~~~~~~~~~l~g-~~sL~el~ali~~a~l~I~~DS---G---p~Hl--AaA~~~P~i~l 276 (334)
T TIGR02195 222 GNEIEALLPGELRNLAG-ETSLDEAVDLIALAKAVVTNDS---G---LMHV--AAALNRPLVAL 276 (334)
T ss_pred HHHHHHhCCcccccCCC-CCCHHHHHHHHHhCCEEEeeCC---H---HHHH--HHHcCCCEEEE
Confidence 55554443222344665 7789999999999999996432 1 2222 67899999984
No 122
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.64 E-value=0.0032 Score=67.01 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=69.9
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC-----CCC----hH
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-----GPD----KE 329 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-----G~~----~e 329 (414)
.+|+.+.|+..-||+..=++|++.+.++.+. ...++.|+-++- .++ ++
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~-----------------------~~~kv~liQi~~psr~~~~~y~~~~~ 333 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLERYPE-----------------------YRGKVVLIQIAVPSREDVPEYQELRR 333 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH-GG-----------------------GTTTEEEEEE--B-STTSHHHHHHHH
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHhCcC-----------------------ccCcEEEEEEeeccCccchhHHHHHH
Confidence 4999999999999999999999988765321 123477776653 121 23
Q ss_pred HHHHHHHHc----C---CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCe----EEEeeeCC
Q 015058 330 SYEEKIRRL----R---LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYS----LKLLWTCS 398 (414)
Q Consensus 330 ~l~~~i~~l----~---l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~P----vi~s~~~~ 398 (414)
++++++.+. | ..-|.++...++.+++..+|+.||++++. +.-.|+-....||.+|..+ +|.|...|
T Consensus 334 ~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvT---slrDGmNLva~Eyva~q~~~~GvLiLSefaG 410 (474)
T PF00982_consen 334 EVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVT---SLRDGMNLVAKEYVACQDDNPGVLILSEFAG 410 (474)
T ss_dssp HHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE-----SSBS--HHHHHHHHHS-TS--EEEEETTBG
T ss_pred HHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEec---chhhccCCcceEEEEEecCCCCceEeeccCC
Confidence 444444432 2 12477777678999999999999999863 2345677899999999876 67777766
Q ss_pred cc
Q 015058 399 VV 400 (414)
Q Consensus 399 ~~ 400 (414)
.-
T Consensus 411 aa 412 (474)
T PF00982_consen 411 AA 412 (474)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 123
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.64 E-value=9.4e-05 Score=71.63 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhc-------CCeEEEEEcCcchhhh----h---hccCCCcH-------HHHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-------RSAFIVDWHNFGYTLL----S---LSLGRRSH-------FVSIYRW 158 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~-------~~~~Iv~~H~~~~~l~----~---~~~~~~~~-------~~~i~~~ 158 (414)
.+|||||+|++ ++++++.+++... ++|+++|+||..+.-. . +++....+ ......
T Consensus 132 ~~pDIIH~hDW---~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in- 207 (245)
T PF08323_consen 132 WKPDIIHCHDW---HTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQIN- 207 (245)
T ss_dssp -S-SEEEEECG---GGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEE-
T ss_pred CCCCEEEecCc---hHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccC-
Confidence 58999999998 6666666666543 5999999999743200 0 00000000 000001
Q ss_pred HHHHHhccCCEEEEeCHHHHHHHHHh
Q 015058 159 IEKYYGKMANGCLCVTQAMQHELAQN 184 (414)
Q Consensus 159 ~Ek~~~k~ad~ii~vS~~~~~~l~~~ 184 (414)
+.|.-...||.|++||+.+++++.+.
T Consensus 208 ~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 208 FLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred HHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 22345578999999999999887654
No 124
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.033 Score=55.03 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=114.1
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
..||.++...- -+.+++..+++..+-+.+|.+.+.. + . +++.|.+|..-.+-.+
T Consensus 69 ~~Pdl~I~aGr---rta~l~~~lkk~~~~~~vVqI~~Pr--l------p---------------~~~fDlvivp~HD~~~ 122 (329)
T COG3660 69 QRPDLIITAGR---RTAPLAFYLKKKFGGIKVVQIQDPR--L------P---------------YNHFDLVIVPYHDWRE 122 (329)
T ss_pred CCCceEEeccc---chhHHHHHHHHhcCCceEEEeeCCC--C------C---------------cccceEEeccchhhhh
Confidence 56999998876 5667777777766556666554421 0 0 1355777776666665
Q ss_pred HHHHhhCCcEEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCe
Q 015058 180 ELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPA 259 (414)
Q Consensus 180 ~l~~~~gi~i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (414)
...+. |.++.-| ||.+...-+.-...-.++++++. +..++.
T Consensus 123 ~~s~~-~~Nilpi-~Gs~h~Vt~~~lAa~~e~~~~~~-------------------------------------p~~rq~ 163 (329)
T COG3660 123 ELSDQ-GPNILPI-NGSPHNVTSQRLAALREAFKHLL-------------------------------------PLPRQR 163 (329)
T ss_pred hhhcc-CCceeec-cCCCCcccHHHhhhhHHHHHhhC-------------------------------------CCCCce
Confidence 54333 4444333 33211110100011123444431 334556
Q ss_pred EEEEeccCCCCCCh--HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHH
Q 015058 260 LVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 337 (414)
Q Consensus 260 ~i~~vgrl~~~Kg~--~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~ 337 (414)
+-+.+|.=+++-.+ +...+-+..+.+-. ......|+|.=+-..-+..++.++.
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l-------------------------~~~g~~~lisfSRRTp~~~~s~l~~ 218 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKIL-------------------------ENQGGSFLISFSRRTPDTVKSILKN 218 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHH-------------------------HhCCceEEEEeecCCcHHHHHHHHh
Confidence 77777766665555 33333333333211 1224677776554445567776665
Q ss_pred -cCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCcc
Q 015058 338 -LRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 338 -l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~~ 400 (414)
+.-. -+-+-+.--..+-|..+|++||.+|+.-.|. . -..||.++|+||-+..-.+++
T Consensus 219 ~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi---n---M~sEAasTgkPv~~~~~~~~~ 277 (329)
T COG3660 219 NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI---N---MCSEAASTGKPVFILEPPNFN 277 (329)
T ss_pred ccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh---h---hhHHHhccCCCeEEEecCCcc
Confidence 3333 3333221113458999999999999754332 2 258999999999998777765
No 125
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.57 E-value=0.017 Score=58.97 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=74.4
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 015058 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (414)
Q Consensus 24 ~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~D 103 (414)
.+.+|-++ ||+|.|.|..... ..++.+.-|++...+. ... .. ....+...+.....++.. . +..+||
T Consensus 19 ~I~eL~~~-GheV~it~R~~~~-~~~LL~~yg~~y~~iG--~~g---~~----~~~Kl~~~~~R~~~l~~~-~-~~~~pD 85 (335)
T PF04007_consen 19 IIRELEKR-GHEVLITARDKDE-TEELLDLYGIDYIVIG--KHG---DS----LYGKLLESIERQYKLLKL-I-KKFKPD 85 (335)
T ss_pred HHHHHHhC-CCEEEEEEeccch-HHHHHHHcCCCeEEEc--CCC---CC----HHHHHHHHHHHHHHHHHH-H-HhhCCC
Confidence 45777775 9999999977532 3455666788887776 221 11 111122222222222221 1 337999
Q ss_pred EEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHHH
Q 015058 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQ 183 (414)
Q Consensus 104 vvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~ 183 (414)
++++..+ + .+..+++.+|+|.|.-.++ +... . ..+.....||.+++.+---.+.+ .
T Consensus 86 v~is~~s---~---~a~~va~~lgiP~I~f~D~-e~a~----~------------~~~Lt~Pla~~i~~P~~~~~~~~-~ 141 (335)
T PF04007_consen 86 VAISFGS---P---EAARVAFGLGIPSIVFNDT-EHAI----A------------QNRLTLPLADVIITPEAIPKEFL-K 141 (335)
T ss_pred EEEecCc---H---HHHHHHHHhCCCeEEEecC-chhh----c------------cceeehhcCCeeECCcccCHHHH-H
Confidence 9988765 2 2334466789999874443 2210 0 11234468999887665444433 3
Q ss_pred hhCCcEEEe-cCC
Q 015058 184 NWGIKATVL-YDQ 195 (414)
Q Consensus 184 ~~gi~i~vI-~n~ 195 (414)
++|.+-.+. |||
T Consensus 142 ~~G~~~~i~~y~G 154 (335)
T PF04007_consen 142 RFGAKNQIRTYNG 154 (335)
T ss_pred hcCCcCCEEEECC
Confidence 467763344 677
No 126
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.56 E-value=0.027 Score=56.95 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=60.7
Q ss_pred CeEEEEeccCCCCCC--hHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC--hHHHHH
Q 015058 258 PALVVSSTSWTPDED--FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEE 333 (414)
Q Consensus 258 ~~~i~~vgrl~~~Kg--~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--~e~l~~ 333 (414)
++++++.|.=.+.|. .+...+.++.+.+ .+.+++++|...+ ++..++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-----------------------------~~~~vvl~ggp~e~e~~~~~~ 234 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQA-----------------------------RGYEVVLTSGPDKDDLACVNE 234 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEcCCChHHHHHHHH
Confidence 456666665444554 4466666666643 1467788874322 222344
Q ss_pred HHHHcCCCc-EEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 334 KIRRLRLKR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 334 ~i~~l~l~~-V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
..+...-.+ +.+.| ..+-.++..+++.||++|+..+ | |+=+ |-|.|+|+|+..
T Consensus 235 i~~~~~~~~~~~l~g-~~sL~el~ali~~a~l~v~nDS---G---p~Hl--AaA~g~P~v~lf 288 (352)
T PRK10422 235 IAQGCQTPPVTALAG-KTTFPELGALIDHAQLFIGVDS---A---PAHI--AAAVNTPLICLF 288 (352)
T ss_pred HHHhcCCCccccccC-CCCHHHHHHHHHhCCEEEecCC---H---HHHH--HHHcCCCEEEEE
Confidence 433323233 44555 7899999999999999996422 2 3322 678899999854
No 127
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.43 E-value=0.072 Score=54.59 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=45.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCC-CcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 318 LFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 318 ~liI~G~G~~~e~l~~~i~~l~l-~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
-++|.|-=--++.-+++.+.-.- .+|+.+. .++|...+++.||+.|+. .|- +.+||.++.|+|.+.
T Consensus 253 ~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~---f~~~~~~ll~gA~~vVSm----~GY---NTvCeILs~~k~aLi 319 (400)
T COG4671 253 WLIVTGPFMPEAQRQKLLASAPKRPHISIFE---FRNDFESLLAGARLVVSM----GGY---NTVCEILSFGKPALI 319 (400)
T ss_pred eEEEeCCCCCHHHHHHHHHhcccCCCeEEEE---hhhhHHHHHHhhheeeec----ccc---hhhhHHHhCCCceEE
Confidence 46777643223333333333332 3899987 899999999999999953 222 368999999999875
No 128
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.40 E-value=0.03 Score=56.22 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCC--hHHHHHHHHHcCCCcE-EEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEE
Q 015058 316 RLLFIITGKGPD--KESYEEKIRRLRLKRV-AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 316 ~i~liI~G~G~~--~e~l~~~i~~l~l~~V-~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi 392 (414)
+..++++|.+.+ ++..++..+..+-.++ .+.| ..+-.++..+++.||++|+..+ | |+=+ |-|.|+|+|
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g-~~sL~el~ali~~a~l~Vs~DS---G---p~Hl--AaA~g~p~v 283 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAG-KLTLPQLAALIDHARLFIGVDS---V---PMHM--AAALGTPLV 283 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCC-CCCHHHHHHHHHhCCEEEecCC---H---HHHH--HHHcCCCEE
Confidence 467888884332 2233443333332344 4555 8889999999999999996422 2 3322 788999999
Q ss_pred Eee
Q 015058 393 LLW 395 (414)
Q Consensus 393 ~s~ 395 (414)
+.-
T Consensus 284 ~Lf 286 (344)
T TIGR02201 284 ALF 286 (344)
T ss_pred EEE
Confidence 853
No 129
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.35 E-value=0.028 Score=60.22 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHH--hhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 317 LLFIITGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLL--GSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l--~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
.++++..++...+ .++. ||.+.+ |+|..+ +| ..+++||. |. |. ..+.||+++|+|+|+
T Consensus 329 ~~viw~~~~~~~~--------~~~p~Nv~i~~-w~Pq~~---lL~hp~v~~fIt-HG---G~---~s~~Eal~~GvP~v~ 389 (507)
T PHA03392 329 YNVLWKYDGEVEA--------INLPANVLTQK-WFPQRA---VLKHKNVKAFVT-QG---GV---QSTDEAIDALVPMVG 389 (507)
T ss_pred CeEEEEECCCcCc--------ccCCCceEEec-CCCHHH---HhcCCCCCEEEe-cC---Cc---ccHHHHHHcCCCEEE
Confidence 4677765543322 2344 999986 999866 45 56899994 32 22 258999999999998
Q ss_pred eee
Q 015058 394 LWT 396 (414)
Q Consensus 394 s~~ 396 (414)
.-.
T Consensus 390 iP~ 392 (507)
T PHA03392 390 LPM 392 (507)
T ss_pred CCC
Confidence 433
No 130
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.30 E-value=0.0026 Score=64.42 Aligned_cols=190 Identities=13% Similarity=0.221 Sum_probs=86.9
Q ss_pred hhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCcE-EEecCC-CC-CC-
Q 015058 124 SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKA-TVLYDQ-PP-EF- 199 (414)
Q Consensus 124 ~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~i-~vI~n~-~~-~~- 199 (414)
...+.++|-.||+.+..-.+..........+ .-+...+..|.++|.|+.+++.+.+.++.+. .++.-| |- +.
T Consensus 96 ~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~----~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l 171 (369)
T PF04464_consen 96 KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRK----NYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYL 171 (369)
T ss_dssp --TTSEEEE--SS--SB--GGG-S---TS-H----HHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHH
T ss_pred cCCCcEEEEecCCCcccccchhccccccchh----hhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHH
Confidence 3467889999999854221111100000001 1123457889999999999999999888872 444445 31 12
Q ss_pred cCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCCh------
Q 015058 200 FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDF------ 273 (414)
Q Consensus 200 f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~------ 273 (414)
+.... ..+..++++++ ++.++. +|+|+=.|+....-
T Consensus 172 ~~~~~-~~~~~i~~~~~------------------------------------~~~~~k-~ILyaPT~R~~~~~~~~~~~ 213 (369)
T PF04464_consen 172 FNKSK-ENRNRIKKKLG------------------------------------IDKDKK-VILYAPTWRDNSSNEYFKFF 213 (369)
T ss_dssp HHSTT--HHHHHHHHTT--------------------------------------SS-E-EEEEE----GGG--GGSS--
T ss_pred hccCH-HHHHHHHHHhc------------------------------------cCCCCc-EEEEeecccccccccccccc
Confidence 22222 22445555543 344553 88888777665443
Q ss_pred HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHH-cCCC-cEEEecCCCC
Q 015058 274 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR-LRLK-RVAFRTMWLS 351 (414)
Q Consensus 274 ~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~-l~l~-~V~f~g~~v~ 351 (414)
...++.-..... ..+++.+++-.= | ..+...+. .... +|.+.. +
T Consensus 214 ~~~~~~~~l~~~---------------------------~~~~~~li~k~H-p---~~~~~~~~~~~~~~~i~~~~---~ 259 (369)
T PF04464_consen 214 FSDLDFEKLNFL---------------------------LKNNYVLIIKPH-P---NMKKKFKDFKEDNSNIIFVS---D 259 (369)
T ss_dssp --TT-HHHHHHH---------------------------HTTTEEEEE--S-H---HHHTT----TT-TTTEEE-T---T
T ss_pred ccccCHHHHHHH---------------------------hCCCcEEEEEeC-c---hhhhchhhhhccCCcEEECC---C
Confidence 111111111110 134677777531 1 22222222 2333 899887 6
Q ss_pred hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 352 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 352 ~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
.+++..+|..||+.|+ +..+.++|++.+++|||.-..+
T Consensus 260 ~~~~~~ll~~aDiLIT--------DySSi~fD~~~l~KPiify~~D 297 (369)
T PF04464_consen 260 NEDIYDLLAAADILIT--------DYSSIIFDFLLLNKPIIFYQPD 297 (369)
T ss_dssp -S-HHHHHHT-SEEEE--------SS-THHHHHGGGT--EEEE-TT
T ss_pred CCCHHHHHHhcCEEEE--------echhHHHHHHHhCCCEEEEecc
Confidence 7799999999999994 2234689999999999975433
No 131
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.029 Score=57.93 Aligned_cols=212 Identities=16% Similarity=0.111 Sum_probs=124.7
Q ss_pred cCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 99 ~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
..+||+|.+|.-. .+.+++.+++...++|+-.---+.- ++... +--.+- .+...+.||.-+|.++..+
T Consensus 90 ~~kPD~VlVhGDT--~t~lA~alaa~~~~IpV~HvEAGlR------t~~~~-~PEE~N---R~l~~~~S~~hfapte~ar 157 (383)
T COG0381 90 EEKPDLVLVHGDT--NTTLAGALAAFYLKIPVGHVEAGLR------TGDLY-FPEEIN---RRLTSHLSDLHFAPTEIAR 157 (383)
T ss_pred hhCCCEEEEeCCc--chHHHHHHHHHHhCCceEEEecccc------cCCCC-CcHHHH---HHHHHHhhhhhcCChHHHH
Confidence 4899999999762 3445667778888999854222210 01111 111111 1355678899999999999
Q ss_pred HHHHHhhCCc---EEEecCCCCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccc-cccC
Q 015058 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGID-VFLK 254 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~n~~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 254 (414)
+.|.+. |.+ +.++-|...+...-+. .....+.... .. +..+
T Consensus 158 ~nLl~E-G~~~~~IfvtGnt~iDal~~~~----~~~~~~~~~~------------------------------~~~~~~~ 202 (383)
T COG0381 158 KNLLRE-GVPEKRIFVTGNTVIDALLNTR----DRVLEDSKIL------------------------------AKGLDDK 202 (383)
T ss_pred HHHHHc-CCCccceEEeCChHHHHHHHHH----hhhccchhhH------------------------------Hhhhccc
Confidence 999886 876 6666555332221110 0000000000 00 1122
Q ss_pred CCCCeEEEEeccCCC-CCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 255 PNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~-~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
++..++++.=|-.. .+++..+.+|+..+.++ +|++.++.-= ..++.+++
T Consensus 203 -~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~---------------------------~~~~~viyp~--H~~~~v~e 252 (383)
T COG0381 203 -DKKYILVTAHRRENVGEPLEEICEALREIAEE---------------------------YPDVIVIYPV--HPRPRVRE 252 (383)
T ss_pred -cCcEEEEEcchhhcccccHHHHHHHHHHHHHh---------------------------CCCceEEEeC--CCChhhhH
Confidence 22345555443333 27888888888888763 5666655521 22356666
Q ss_pred HH-HHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 334 KI-RRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 334 ~i-~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
.. +.|+-. +|.++. .+...++..++..|-+.+ . .|.|. .=||-..|+||++...
T Consensus 253 ~~~~~L~~~~~v~li~-pl~~~~f~~L~~~a~~il--t-DSGgi-----qEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 253 LVLKRLKNVERVKLID-PLGYLDFHNLMKNAFLIL--T-DSGGI-----QEEAPSLGKPVLVLRD 308 (383)
T ss_pred HHHHHhCCCCcEEEeC-CcchHHHHHHHHhceEEE--e-cCCch-----hhhHHhcCCcEEeecc
Confidence 66 556555 899995 788889999999996655 2 23332 4689999999998544
No 132
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.12 E-value=0.0057 Score=64.86 Aligned_cols=118 Identities=8% Similarity=-0.086 Sum_probs=74.9
Q ss_pred eccccccccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC
Q 015058 245 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 324 (414)
Q Consensus 245 ~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~ 324 (414)
..-+..+||+.+. ++..+..++ .|=-+..+++...+.++ -|+.+|++...
T Consensus 273 ~~~R~~~gLp~d~-vvF~~fn~~--~KI~p~~l~~W~~IL~~---------------------------vP~S~L~L~~~ 322 (468)
T PF13844_consen 273 VTTRAQYGLPEDA-VVFGSFNNL--FKISPETLDLWARILKA---------------------------VPNSRLWLLRF 322 (468)
T ss_dssp EEETGGGT--SSS-EEEEE-S-G--GG--HHHHHHHHHHHHH---------------------------STTEEEEEEET
T ss_pred ccCHHHcCCCCCc-eEEEecCcc--ccCCHHHHHHHHHHHHh---------------------------CCCcEEEEeeC
Confidence 3458889998775 344444554 45667788888888775 58888877654
Q ss_pred CC-ChHHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 325 GP-DKESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 325 G~-~~e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+. .++.+++.++++|+. |+.|.+ ..+.++.-..++.+|+++=+ ... +=....+||+++|+|||+..-.
T Consensus 323 ~~~~~~~l~~~~~~~Gv~~~Ri~f~~-~~~~~ehl~~~~~~DI~LDT--~p~--nG~TTt~dALwmGVPvVTl~G~ 393 (468)
T PF13844_consen 323 PASGEARLRRRFAAHGVDPDRIIFSP-VAPREEHLRRYQLADICLDT--FPY--NGGTTTLDALWMGVPVVTLPGE 393 (468)
T ss_dssp STTHHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE----SSS----SHHHHHHHHHT--EEB---S
T ss_pred CHHHHHHHHHHHHHcCCChhhEEEcC-CCCHHHHHHHhhhCCEEeeC--CCC--CCcHHHHHHHHcCCCEEeccCC
Confidence 43 357889999999997 999997 88999999999999999821 111 1245789999999999986533
No 133
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.14 Score=54.78 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=81.3
Q ss_pred eEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCC--ChH-------
Q 015058 259 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKE------- 329 (414)
Q Consensus 259 ~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~--~~e------- 329 (414)
.+|+.+.|+..-||+..=+.|++.+.++.+. ...++.|+-++... +.+
T Consensus 283 kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe-----------------------~~~kvvliQi~~pSr~~v~~y~~~~~ 339 (486)
T COG0380 283 KLIVGVDRLDYSKGIPQRLLAFERLLEEYPE-----------------------WRGKVVLLQIAPPSREDVEEYQALRL 339 (486)
T ss_pred eEEEEehhcccccCcHHHHHHHHHHHHhChh-----------------------hhCceEEEEecCCCccccHHHHHHHH
Confidence 5999999999999999999999998864210 11246677666432 222
Q ss_pred HHHHHHHHc-------CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCC----eEEEeeeCC
Q 015058 330 SYEEKIRRL-------RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRY----SLKLLWTCS 398 (414)
Q Consensus 330 ~l~~~i~~l-------~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~----Pvi~s~~~~ 398 (414)
++++.+.+- +..-|.|+...++.+++..+|+.||++++. +.-.|+-.+.-||.||.- |.|.|...|
T Consensus 340 ~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVt---plrDGMNLvakEyVa~q~~~~G~LiLSeFaG 416 (486)
T COG0380 340 QIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVT---PLRDGMNLVAKEYVAAQRDKPGVLILSEFAG 416 (486)
T ss_pred HHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeec---cccccccHHHHHHHHhhcCCCCcEEEecccc
Confidence 223333332 233688887668999999999999999853 334577788999988754 777777766
Q ss_pred cc
Q 015058 399 VV 400 (414)
Q Consensus 399 ~~ 400 (414)
--
T Consensus 417 aa 418 (486)
T COG0380 417 AA 418 (486)
T ss_pred ch
Confidence 43
No 134
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=97.02 E-value=0.067 Score=52.86 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=58.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCC----------CcHHHHHHHHHHHHHhccCCE
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR----------RSHFVSIYRWIEKYYGKMANG 169 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~----------~~~~~~i~~~~Ek~~~k~ad~ 169 (414)
-+.||+|+.+. ..++++|.+++...|+|+++|-|+...--..+.... +..+.+++..+-+..|+.||.
T Consensus 171 P~advyHsvst--GyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~ 248 (268)
T PF11997_consen 171 PKADVYHSVST--GYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADR 248 (268)
T ss_pred CCCCEEecCCc--cHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 47799999975 356677888888899999999999832111111111 223356666667888999999
Q ss_pred EEEeCHHHHHHHHHhhCC
Q 015058 170 CLCVTQAMQHELAQNWGI 187 (414)
Q Consensus 170 ii~vS~~~~~~l~~~~gi 187 (414)
|++..+..++. +...|-
T Consensus 249 I~~l~~~n~~~-q~~~Ga 265 (268)
T PF11997_consen 249 ITPLYEYNREW-QIELGA 265 (268)
T ss_pred ecccchhhHHH-HHHhCC
Confidence 99999987764 333453
No 135
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.02 Score=61.57 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=78.9
Q ss_pred cccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC---
Q 015058 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--- 327 (414)
Q Consensus 251 ~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~--- 327 (414)
+||+++. .+..+.++. .|=.+.+.+-..++.+. -|+-.|.+-|.|++
T Consensus 424 lglp~~a-vVf~c~~n~--~K~~pev~~~wmqIL~~---------------------------vP~Svl~L~~~~~~~~~ 473 (620)
T COG3914 424 LGLPEDA-VVFCCFNNY--FKITPEVFALWMQILSA---------------------------VPNSVLLLKAGGDDAEI 473 (620)
T ss_pred cCCCCCe-EEEEecCCc--ccCCHHHHHHHHHHHHh---------------------------CCCcEEEEecCCCcHHH
Confidence 4677653 233344444 45566666666666553 57878888887765
Q ss_pred hHHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 328 KESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 328 ~e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
...+++.+++.|+. |..|.+ ..+.++....|+.||+++ .+-+. +=.+...|++.+|+||++
T Consensus 474 ~~~l~~la~~~Gv~~eRL~f~p-~~~~~~h~a~~~iADlvL--DTyPY--~g~TTa~daLwm~vPVlT 536 (620)
T COG3914 474 NARLRDLAEREGVDSERLRFLP-PAPNEDHRARYGIADLVL--DTYPY--GGHTTASDALWMGVPVLT 536 (620)
T ss_pred HHHHHHHHHHcCCChhheeecC-CCCCHHHHHhhchhheee--ecccC--CCccchHHHHHhcCceee
Confidence 45889999999997 999996 889999999999999998 22222 123467999999999997
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.84 E-value=0.12 Score=51.98 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=65.0
Q ss_pred CCCeEEEEecc-CCCCC--ChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 256 NRPALVVSSTS-WTPDE--DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 256 ~~~~~i~~vgr-l~~~K--g~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
+++.+++..|. +.+.| ..+...+.++.+.+ .+++++++|...+++..+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-----------------------------~~~~vvl~Gg~~e~~~~~ 229 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID-----------------------------EGYQVVLFGSAKDHEAGN 229 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEeCHHhHHHHH
Confidence 45566666655 43444 34456666665542 246888888666666666
Q ss_pred HHHHHcCCC---c-EEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 333 EKIRRLRLK---R-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 333 ~~i~~l~l~---~-V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
+..+.++-. + +.+.| ..+-.++..+++.||++|+..+ | |+=+ |-|.|+|+|+..
T Consensus 230 ~i~~~~~~~~~~~~~~l~g-~~sL~el~ali~~a~l~I~nDT---G---p~Hl--AaA~g~P~valf 287 (348)
T PRK10916 230 EILAALNTEQQAWCRNLAG-ETQLEQAVILIAACKAIVTNDS---G---LMHV--AAALNRPLVALY 287 (348)
T ss_pred HHHHhcccccccceeeccC-CCCHHHHHHHHHhCCEEEecCC---h---HHHH--HHHhCCCEEEEE
Confidence 655544321 3 44554 7788999999999999996432 2 2222 778899999854
No 137
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.75 E-value=0.093 Score=51.97 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCeEEEEeccCCCCCCh--HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCCh-HHHHH
Q 015058 257 RPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEE 333 (414)
Q Consensus 257 ~~~~i~~vgrl~~~Kg~--~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~-e~l~~ 333 (414)
++.++++.|.=.+.|.. +...+.++.+.+ .+..++++|.|+.. +..++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~-----------------------------~~~~~vl~~g~~~e~~~~~~ 229 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLA-----------------------------RGLQIVLPWGNDAEKQRAER 229 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHH-----------------------------CCCeEEEeCCCHHHHHHHHH
Confidence 44566666543355554 466666666643 14677887656543 44444
Q ss_pred HHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 334 ~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
..+. +.+..+.| ..+-.++..+++.||++|+..+ | |+=+ |-|.|+|+|+..-
T Consensus 230 i~~~--~~~~~l~g-~~sL~el~ali~~a~l~I~~DS---g---p~Hl--Aaa~g~P~i~lfg 281 (319)
T TIGR02193 230 IAEA--LPGAVVLP-KMSLAEVAALLAGADAVVGVDT---G---LTHL--AAALDKPTVTLYG 281 (319)
T ss_pred HHhh--CCCCeecC-CCCHHHHHHHHHcCCEEEeCCC---h---HHHH--HHHcCCCEEEEEC
Confidence 4433 33345666 7789999999999999996432 1 3322 6788999998653
No 138
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.49 E-value=0.3 Score=49.27 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCeEEEEec-cCCCCCChH--HHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHH
Q 015058 257 RPALVVSST-SWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 333 (414)
Q Consensus 257 ~~~~i~~vg-rl~~~Kg~~--~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~ 333 (414)
+|.++++.| +-...|... ...+.++.+.++ . .+++++|.+.+++..++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~---------------------------~--~~Vvl~g~~~e~e~~~~ 225 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK---------------------------G--YQVVLFGGPDEEERAEE 225 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC---------------------------C--CEEEEecChHHHHHHHH
Confidence 456777777 665666543 666666666542 2 78889998766666666
Q ss_pred HHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 334 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 334 ~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
..+.++- .+.+.| ..+-+++..+++.||++|+..+ | |+=+ |-|.|+|+|+.-
T Consensus 226 i~~~~~~-~~~l~~-k~sL~e~~~li~~a~l~I~~DS---g---~~Hl--AaA~~~P~I~iy 277 (334)
T COG0859 226 IAKGLPN-AVILAG-KTSLEELAALIAGADLVIGNDS---G---PMHL--AAALGTPTIALY 277 (334)
T ss_pred HHHhcCC-ccccCC-CCCHHHHHHHHhcCCEEEccCC---h---HHHH--HHHcCCCEEEEE
Confidence 6555432 223775 8899999999999999996532 2 2212 778899999854
No 139
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.46 E-value=0.07 Score=55.65 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=71.1
Q ss_pred cCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHH
Q 015058 253 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 332 (414)
Q Consensus 253 l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~ 332 (414)
+..++|.+.++.|+.... ..+++.+..... .-+.++++...+ .+..
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~----------------------------~l~~~vi~~~~~-~~~~-- 278 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALA----------------------------DLDVRVIVSLGG-ARDT-- 278 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHh----------------------------cCCcEEEEeccc-cccc--
Confidence 355778788888888755 444554444332 124788887644 3222
Q ss_pred HHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCc----------cc
Q 015058 333 EKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSV----------VG 401 (414)
Q Consensus 333 ~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~----------~~ 401 (414)
..++. |+...+ |+|..+ ++..||++|+. . |. +.+.||++.|+|+|+-..+.+ .|
T Consensus 279 ----~~~~p~n~~v~~-~~p~~~---~l~~ad~vI~h-G---G~---gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G 343 (406)
T COG1819 279 ----LVNVPDNVIVAD-YVPQLE---LLPRADAVIHH-G---GA---GTTSEALYAGVPLVVIPDGADQPLNAERVEELG 343 (406)
T ss_pred ----cccCCCceEEec-CCCHHH---HhhhcCEEEec-C---Cc---chHHHHHHcCCCEEEecCCcchhHHHHHHHHcC
Confidence 22455 888886 888766 88999999963 2 22 258999999999999888875 47
Q ss_pred chhhhh
Q 015058 402 CLFVLF 407 (414)
Q Consensus 402 ~~~~~~ 407 (414)
|..++.
T Consensus 344 ~G~~l~ 349 (406)
T COG1819 344 AGIALP 349 (406)
T ss_pred CceecC
Confidence 775554
No 140
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.16 E-value=0.13 Score=52.77 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 317 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
..|++.|.-. .+.+++...+. ..+.+.+ +...+|++||+.++. || +..+|++.+|+|.|...
T Consensus 200 ~~~~i~~a~~-~~~i~~~~~~~--~~~~~~~------~~~~~m~~aDlal~~----SG----T~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 200 KILVVPSFFK-GKDLKEIYGDI--SEFEISY------DTHKALLEAEFAFIC----SG----TATLEAALIGTPFVLAY 261 (347)
T ss_pred cEEEEeCCCc-HHHHHHHHhcC--CCcEEec------cHHHHHHhhhHHHhc----Cc----HHHHHHHHhCCCEEEEE
Confidence 6788887643 36666655432 2344432 446799999999853 23 25679999999999844
No 141
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.09 E-value=1.6 Score=42.86 Aligned_cols=181 Identities=19% Similarity=0.120 Sum_probs=97.8
Q ss_pred HHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCCCCCCcC
Q 015058 122 ASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFH 201 (414)
Q Consensus 122 a~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~ 201 (414)
.+++.|.|+++--.++++ + ++. ..+++-+...+.+|.+.+=.+..++.+++ +|+++.+.++. .+..
T Consensus 94 ~a~~~~k~~~~~g~giGP------~--~~~---~~r~~~~~~l~~~~~i~vRD~~S~~~l~~-~g~~i~~~~D~--a~~l 159 (298)
T TIGR03609 94 LARLFGKPVILWGQGIGP------L--RRR---LSRWLVRRVLRGCRAISVRDAASYRLLKR-LGIPAELAADP--VWLL 159 (298)
T ss_pred HHHHcCCCEEEEecccCC------c--CCH---HHHHHHHHHHccCCEEEEeCHHHHHHHHH-hCCCceEeCCh--hhhC
Confidence 345578888765445432 1 111 23344456668999998888888887765 58876655533 2222
Q ss_pred CCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCC--CCChHHHHHH
Q 015058 202 PTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEA 279 (414)
Q Consensus 202 p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~--~Kg~~~LleA 279 (414)
+.... . . ....+++.+.+++..|.. ++..+.+.++
T Consensus 160 ~~~~~--~----~-------------------------------------~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~ 196 (298)
T TIGR03609 160 PPEPW--P----G-------------------------------------GEPLPEPVIVVSLRPWPLLDVSRLLRLLRA 196 (298)
T ss_pred CCCcc--c----c-------------------------------------cccCCCCeEEEEECCCCcCCHHHHHHHHHH
Confidence 21100 0 0 001123345556555422 2234456666
Q ss_pred HHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCC-cEEEecCCCChhhHHHH
Q 015058 280 ALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLL 358 (414)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~ 358 (414)
+..+.++. .-++.++=...+.+.+..++..+.+.-. +|. . ..+.+++-.+
T Consensus 197 l~~l~~~~--------------------------g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~--~-~~~~~e~~~~ 247 (298)
T TIGR03609 197 LDRLQRDT--------------------------GAFVLFLPFQQPQDLPLARALRDQLLGPAEVL--S-PLDPEELLGL 247 (298)
T ss_pred HHHHHHhh--------------------------CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEE--e-cCCHHHHHHH
Confidence 66554320 1123332222234555555554444322 343 3 4488899999
Q ss_pred HhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 359 LGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 359 l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+++||+.|..- -. .++=|+.+|+|+++...
T Consensus 248 i~~~~~vI~~R--lH------~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 248 FASARLVIGMR--LH------ALILAAAAGVPFVALSY 277 (298)
T ss_pred HhhCCEEEEec--hH------HHHHHHHcCCCEEEeec
Confidence 99999998421 11 25779999999998643
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.84 E-value=0.83 Score=46.14 Aligned_cols=75 Identities=17% Similarity=0.028 Sum_probs=53.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHcC--CCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 317 LLFIITGKGPDKESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~~l~--l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
..+.|+.+----++.++..+++- ...+.+.. .-+.+-|..+|+.||.+++...|. . =+.||.++|.||-..
T Consensus 183 ~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~-~~~~nPy~~~La~ad~i~VT~DSv-----S-MvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 183 GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWD-GTGENPYLGFLAAADAIVVTEDSV-----S-MVSEAAATGKPVYVL 255 (311)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEec-CCCCCcHHHHHHhCCEEEEcCccH-----H-HHHHHHHcCCCEEEe
Confidence 78888887544445555554432 23674443 447778999999999998754332 2 389999999999998
Q ss_pred eeCC
Q 015058 395 WTCS 398 (414)
Q Consensus 395 ~~~~ 398 (414)
...+
T Consensus 256 ~l~~ 259 (311)
T PF06258_consen 256 PLPG 259 (311)
T ss_pred cCCC
Confidence 8887
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.81 E-value=0.21 Score=46.06 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=38.0
Q ss_pred CCCcEEEEeCC-CCchHHHHHHHHHhh--cCCeEEE--EEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeC
Q 015058 100 ASPDVFLVQNP-PSVPTLVAVKWASSL--RRSAFIV--DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (414)
Q Consensus 100 ~~~Dvvh~~~p-p~~~~~~~~~la~~~--~~~~~Iv--~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS 174 (414)
.+||+|+++.| +++|..+++++.+.+ .|.++|+ +|-... ..+.-- |.+++.||..+++-
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~aRv~---------~lSlTG-------klly~~aD~f~VQW 154 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFARVK---------TLSLTG-------KLLYPFADRFIVQW 154 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeeeecC---------CCchHH-------HHHHHhCCEEEEcC
Confidence 78999999988 333333333333211 2788876 232221 112111 24456799999999
Q ss_pred HHHHHH
Q 015058 175 QAMQHE 180 (414)
Q Consensus 175 ~~~~~~ 180 (414)
+++++.
T Consensus 155 ~~l~~~ 160 (170)
T PF08660_consen 155 EELAEK 160 (170)
T ss_pred HHHHhH
Confidence 998763
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.05 E-value=0.086 Score=51.27 Aligned_cols=98 Identities=20% Similarity=0.123 Sum_probs=65.3
Q ss_pred EEEEeccCCCCC--ChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHH
Q 015058 260 LVVSSTSWTPDE--DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 337 (414)
Q Consensus 260 ~i~~vgrl~~~K--g~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~ 337 (414)
+++..|.=.+.| ..+...+.++.+.+ . +.++++.|...+++..++..+.
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~----------------------------~-~~~ivl~g~~~e~~~~~~i~~~ 174 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLA----------------------------R-GARVVLTGGPAERELAEEIAAA 174 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHH----------------------------C-CCEEEEEechhhHHHHHHHHHh
Confidence 444444433333 44677888877764 2 5788999877777766666655
Q ss_pred cCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 338 LRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 338 l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
.+-. .+.+.| ..+-.++..+++.||++|...+ | | +-=|.+.|+|+++..
T Consensus 175 ~~~~~~~~~~~-~~~l~e~~~li~~~~l~I~~Ds---g---~--~HlA~a~~~p~i~l~ 224 (279)
T cd03789 175 LGGPRVVNLAG-KTSLRELAALLARADLVVTNDS---G---P--MHLAAALGTPTVALF 224 (279)
T ss_pred cCCCccccCcC-CCCHHHHHHHHHhCCEEEeeCC---H---H--HHHHHHcCCCEEEEE
Confidence 4322 445565 6688999999999999996532 1 1 233578999999854
No 145
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.89 E-value=0.42 Score=44.31 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 015058 32 MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPP 111 (414)
Q Consensus 32 ~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp 111 (414)
.||+|..+|..... .. .+||++.+............-....+-....--......+..|..+-..||||+.|.-
T Consensus 2 ~gh~v~fl~~~~~~---~~--~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~G- 75 (171)
T PF12000_consen 2 RGHEVVFLTERKRP---PI--PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPG- 75 (171)
T ss_pred CCCEEEEEecCCCC---CC--CCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCC-
Confidence 39999999944322 11 1688888876211111111101111111111112222233334444568999999953
Q ss_pred CchHHHHHHHHHhh-cCCeEEE--EE-cCcchhhhhhccC---CCcHH----HHHHHHHHHHHhccCCEEEEeCHHHHHH
Q 015058 112 SVPTLVAVKWASSL-RRSAFIV--DW-HNFGYTLLSLSLG---RRSHF----VSIYRWIEKYYGKMANGCLCVTQAMQHE 180 (414)
Q Consensus 112 ~~~~~~~~~la~~~-~~~~~Iv--~~-H~~~~~l~~~~~~---~~~~~----~~i~~~~Ek~~~k~ad~ii~vS~~~~~~ 180 (414)
+--+++++-. ..+|+|. .| +..... ...+. ..+.- .++-....-.-...||..++.|+--++.
T Consensus 76 ----WGe~Lflkdv~P~a~li~Y~E~~y~~~g~--d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~ 149 (171)
T PF12000_consen 76 ----WGETLFLKDVFPDAPLIGYFEFYYRASGA--DVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQ 149 (171)
T ss_pred ----cchhhhHHHhCCCCcEEEEEEEEecCCCC--cCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHh
Confidence 2234455543 4788875 23 111000 01111 11111 1111111122235799999999876554
Q ss_pred HHHhhCCcEEEecCC-CCCCc
Q 015058 181 LAQNWGIKATVLYDQ-PPEFF 200 (414)
Q Consensus 181 l~~~~gi~i~vI~n~-~~~~f 200 (414)
.=..+.-++.||++| |++.+
T Consensus 150 fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 150 FPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred CCHHHHcCcEEeecccchhhc
Confidence 434344459999999 76654
No 146
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.59 E-value=6.1 Score=40.27 Aligned_cols=262 Identities=15% Similarity=0.104 Sum_probs=135.6
Q ss_pred CCCCCChHHHH---HHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHH
Q 015058 13 GDLGRSPRMQY---QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (414)
Q Consensus 13 ~d~~~~~r~~~---~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~ 89 (414)
-|.+.++.+.. ...+|.++ ||+|.+.|..... ..+..+.-|++...+. ... ..... -.+......-.
T Consensus 5 iDI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~-v~~LLd~ygf~~~~Ig--k~g---~~tl~---~Kl~~~~eR~~ 74 (346)
T COG1817 5 IDIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV-VTELLDLYGFPYKSIG--KHG---GVTLK---EKLLESAERVY 74 (346)
T ss_pred EEcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc-HHHHHHHhCCCeEeec--ccC---CccHH---HHHHHHHHHHH
Confidence 35565665554 34688886 9999998877533 3445556677776665 111 00111 01111111111
Q ss_pred HHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCE
Q 015058 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANG 169 (414)
Q Consensus 90 ~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ 169 (414)
.+.++. ...+||+...-++|- +.+. .+..|+|.|+-..+ +.+. ..+|.....||.
T Consensus 75 -~L~ki~-~~~kpdv~i~~~s~~-----l~rv-afgLg~psIi~~D~-ehA~----------------~qnkl~~Pla~~ 129 (346)
T COG1817 75 -KLSKII-AEFKPDVAIGKHSPE-----LPRV-AFGLGIPSIIFVDN-EHAE----------------AQNKLTLPLADV 129 (346)
T ss_pred -HHHHHH-hhcCCceEeecCCcc-----hhhH-HhhcCCceEEecCC-hhHH----------------HHhhcchhhhhh
Confidence 111222 237999876533321 2232 34467887763222 1110 124566789999
Q ss_pred EEEeCHHHHHHHHHhhCCc-E-EEecCC-----CCCCcCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccce
Q 015058 170 CLCVTQAMQHELAQNWGIK-A-TVLYDQ-----PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETI 242 (414)
Q Consensus 170 ii~vS~~~~~~l~~~~gi~-i-~vI~n~-----~~~~f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (414)
+++.+-...+++.. +|.+ . .+-+|+ +...|.|.+ ++.++|+
T Consensus 130 ii~P~~~~~~~~~~-~G~~p~~i~~~~giae~~~v~~f~pd~-----evlkeLg-------------------------- 177 (346)
T COG1817 130 IITPEAIDEEELLD-FGADPNKISGYNGIAELANVYGFVPDP-----EVLKELG-------------------------- 177 (346)
T ss_pred eecccccchHHHHH-hCCCccceecccceeEEeecccCCCCH-----HHHHHcC--------------------------
Confidence 99888877777765 4765 2 333454 223366653 3444554
Q ss_pred eeeccccccccCCCCCeEEE-----EeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcE
Q 015058 243 FTSLAGIDVFLKPNRPALVV-----SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 317 (414)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~i~-----~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 317 (414)
+.++.+.+|. .+.-..-+.+.+.+.++.+.+.+ ++
T Consensus 178 ----------l~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k----------------------------~g-- 217 (346)
T COG1817 178 ----------LEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK----------------------------YG-- 217 (346)
T ss_pred ----------CCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh----------------------------Cc--
Confidence 2232232332 12223345677778888888765 34
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 318 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 318 ~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
.++|-=.+++++.+|. ..+++..- +.-|--.++=-||+.+-. + ++---||...|+|.|... .
T Consensus 218 iV~ipr~~~~~eife~------~~n~i~pk---~~vD~l~Llyya~lvig~----g----gTMarEaAlLGtpaIs~~-p 279 (346)
T COG1817 218 IVLIPREKEQAEIFEG------YRNIIIPK---KAVDTLSLLYYATLVIGA----G----GTMAREAALLGTPAISCY-P 279 (346)
T ss_pred EEEecCchhHHHHHhh------hccccCCc---ccccHHHHHhhhheeecC----C----chHHHHHHHhCCceEEec-C
Confidence 3333323333333332 22233222 333433466667777721 1 123579999999999887 5
Q ss_pred Cc
Q 015058 398 SV 399 (414)
Q Consensus 398 ~~ 399 (414)
|.
T Consensus 280 Gk 281 (346)
T COG1817 280 GK 281 (346)
T ss_pred Cc
Confidence 53
No 147
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.49 E-value=7.6 Score=40.98 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCCcEEEEeCCCC------chHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEe
Q 015058 100 ASPDVFLVQNPPS------VPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (414)
Q Consensus 100 ~~~Dvvh~~~pp~------~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~v 173 (414)
++.|+++...-.. ...... .+++++.|.|+++--+++++ + .++. .+++-++..+++|.|.+=
T Consensus 116 ~~aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsiGP------f-~~~~----~r~l~r~vl~~~~~ItvR 183 (426)
T PRK10017 116 SGYDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSVGP------F-QDEQ----FNQLANYVFGHCDALILR 183 (426)
T ss_pred HhCCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcCCC------c-CCHH----HHHHHHHHHhcCCEEEEc
Confidence 6789876653111 111222 24566789999886677653 2 2222 334445667999999888
Q ss_pred CHHHHHHHHHhhCCc
Q 015058 174 TQAMQHELAQNWGIK 188 (414)
Q Consensus 174 S~~~~~~l~~~~gi~ 188 (414)
.+...+.|.+ +|++
T Consensus 184 D~~S~~~Lk~-lGv~ 197 (426)
T PRK10017 184 ESVSLDLMKR-SNIT 197 (426)
T ss_pred cHHHHHHHHH-hCCC
Confidence 8888888865 5886
No 148
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.33 E-value=0.13 Score=42.63 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=55.6
Q ss_pred EEEEcC-CCChHHHHHHHHHcCCCcEEE--ecCCCChh--hHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 319 FIITGK-GPDKESYEEKIRRLRLKRVAF--RTMWLSAE--DYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 319 liI~G~-G~~~e~l~~~i~~l~l~~V~f--~g~~v~~e--d~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
++|+|. ....+.|++.+++.|.+.+.+ -+ ..... .++..+..||+.|++....+-...-..-=+|-..|+|++.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~-~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDG-GDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCC-CCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 456664 577889999999999986666 23 22333 4999999999998763322211122233455678999999
Q ss_pred eeeCCcc
Q 015058 394 LWTCSVV 400 (414)
Q Consensus 394 s~~~~~~ 400 (414)
+...|..
T Consensus 81 ~~~~~~~ 87 (97)
T PF10087_consen 81 SRSRGVS 87 (97)
T ss_pred ECCCCHH
Confidence 9988765
No 149
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.31 E-value=0.085 Score=50.04 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCCeEEEEeccCCCCCChH--HHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCC-hHHHH
Q 015058 256 NRPALVVSSTSWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYE 332 (414)
Q Consensus 256 ~~~~~i~~vgrl~~~Kg~~--~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~-~e~l~ 332 (414)
+++.++++.|.=.+.|... ...+.+..+.+ . ...++++|.+.+ .+++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~----------------------------~-~~~vvl~g~~~~~~~~~~ 154 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKE----------------------------R-GYRVVLLGGPEEQEKEIA 154 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCC----------------------------C-T-EEEE--SSHHHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHh----------------------------h-CceEEEEccchHHHHHHH
Confidence 4456777666655666644 35555555542 2 267888887666 23333
Q ss_pred HHHHH-cCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 333 EKIRR-LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 333 ~~i~~-l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
+.+.+ ..-..+.+.| ..+-.++..+++.||++|+..+. |+ ==|.|.|+|+|+..
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~l~e~~ali~~a~~~I~~Dtg------~~--HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 155 DQIAAGLQNPVINLAG-KTSLRELAALISRADLVIGNDTG------PM--HLAAALGTPTVALF 209 (247)
T ss_dssp HHHHTTHTTTTEEETT-TS-HHHHHHHHHTSSEEEEESSH------HH--HHHHHTT--EEEEE
T ss_pred HHHHHhcccceEeecC-CCCHHHHHHHHhcCCEEEecCCh------HH--HHHHHHhCCEEEEe
Confidence 33332 2222577776 77899999999999999975331 22 12788999999874
No 150
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=94.27 E-value=0.019 Score=51.56 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=43.8
Q ss_pred EEE-EEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 317 LLF-IITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 317 i~l-iI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
.++ +++|+....+. ...++..+ .+|...+ +.++++.+|+.||+.|+- .| .+.+.|++++|+|.|.--
T Consensus 32 ~~viv~~G~~~~~~~-~~~~~~~~-~~v~~~~---~~~~m~~~m~~aDlvIs~----aG---~~Ti~E~l~~g~P~I~ip 99 (167)
T PF04101_consen 32 IQVIVQTGKNNYEEL-KIKVENFN-PNVKVFG---FVDNMAELMAAADLVISH----AG---AGTIAEALALGKPAIVIP 99 (167)
T ss_dssp CCCCCCCTTCECHHH-CCCHCCTT-CCCEEEC---SSSSHHHHHHHHSEEEEC----S----CHHHHHHHHCT--EEEE-
T ss_pred cEEEEEECCCcHHHH-HHHHhccC-CcEEEEe---chhhHHHHHHHcCEEEeC----CC---ccHHHHHHHcCCCeeccC
Confidence 444 45777644332 22233222 4788888 677899999999999952 22 347899999999998755
Q ss_pred eCC
Q 015058 396 TCS 398 (414)
Q Consensus 396 ~~~ 398 (414)
..+
T Consensus 100 ~~~ 102 (167)
T PF04101_consen 100 LPG 102 (167)
T ss_dssp -TT
T ss_pred CCC
Confidence 444
No 151
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=93.41 E-value=1 Score=48.31 Aligned_cols=76 Identities=11% Similarity=-0.089 Sum_probs=46.2
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhh-ccCCCcH--HHHHHHHH--HHHHhccCCEEEEeC
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSL-SLGRRSH--FVSIYRWI--EKYYGKMANGCLCVT 174 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~-~~~~~~~--~~~i~~~~--Ek~~~k~ad~ii~vS 174 (414)
.+||+||.|.. -++.+|.+++...|+|...+-|...-+-+.- +..+... .+++...+ |....+.||.|||-|
T Consensus 400 ~~PdlI~GnYs---DgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST 476 (550)
T PF00862_consen 400 GKPDLIIGNYS---DGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITST 476 (550)
T ss_dssp S--SEEEEEHH---HHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESS
T ss_pred CCCcEEEeccC---cchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcc
Confidence 78999999986 5667777888889999999999986543321 1111111 13444444 456668899999988
Q ss_pred HHHH
Q 015058 175 QAMQ 178 (414)
Q Consensus 175 ~~~~ 178 (414)
..-.
T Consensus 477 ~QEI 480 (550)
T PF00862_consen 477 YQEI 480 (550)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 6544
No 152
>PLN02448 UDP-glycosyltransferase family protein
Probab=93.11 E-value=14 Score=39.23 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=39.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 316 ~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
+..|+++.+++. +.+++... .++...+ |+|.++ +|+-+++ ||. |. | -+.++|++++|+|+|+
T Consensus 303 ~~~~lw~~~~~~-~~~~~~~~----~~~~v~~-w~pQ~~---iL~h~~v~~fvt-Hg---G---~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 303 GVRFLWVARGEA-SRLKEICG----DMGLVVP-WCDQLK---VLCHSSVGGFWT-HC---G---WNSTLEAVFAGVPMLT 366 (459)
T ss_pred CCCEEEEEcCch-hhHhHhcc----CCEEEec-cCCHHH---HhccCccceEEe-cC---c---hhHHHHHHHcCCCEEe
Confidence 357776655442 22333321 2677775 999777 4555666 552 21 2 2478999999999998
Q ss_pred ee
Q 015058 394 LW 395 (414)
Q Consensus 394 s~ 395 (414)
--
T Consensus 367 ~P 368 (459)
T PLN02448 367 FP 368 (459)
T ss_pred cc
Confidence 43
No 153
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.62 E-value=0.49 Score=47.09 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=46.2
Q ss_pred cEEEEEEcCCC-ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 316 RLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 316 ~i~liI~G~G~-~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
+..+++.|.|+ +++..++. .+. ...+.+.| ..+-.++..+++.||++|+..+ | |+=+ |-|+|+|+|+.
T Consensus 210 ~~~ivl~~G~~~e~~~~~~i-~~~-~~~~~l~g-~~sL~elaali~~a~l~I~nDS---G---p~Hl--A~A~g~p~val 278 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKRL-AEG-FPYVEVLP-KLSLEQVARVLAGAKAVVSVDT---G---LSHL--TAALDRPNITL 278 (322)
T ss_pred CCeEEEeCCCHHHHHHHHHH-Hcc-CCcceecC-CCCHHHHHHHHHhCCEEEecCC---c---HHHH--HHHhCCCEEEE
Confidence 45667763354 44444444 332 23566776 7799999999999999996432 2 2222 78899999985
Q ss_pred ee
Q 015058 395 WT 396 (414)
Q Consensus 395 ~~ 396 (414)
.-
T Consensus 279 fG 280 (322)
T PRK10964 279 YG 280 (322)
T ss_pred EC
Confidence 53
No 154
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=92.57 E-value=15 Score=38.38 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=104.8
Q ss_pred HHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHHHhhCCcEEEecCCCCCC
Q 015058 120 KWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEF 199 (414)
Q Consensus 120 ~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~i~vI~n~~~~~ 199 (414)
..++++.+.|+++--|+.++. . ....+|+-++..+++..+++=.+...+.|.+ +|++..... |+.+
T Consensus 117 ~~la~l~~kp~~~~g~svGP~--------~---~~~s~~~~~~~~~~~s~i~vRD~~S~~llk~-~gi~a~l~~--D~Af 182 (385)
T COG2327 117 ILLARLAGKPTFFFGQSVGPL--------K---HPLSRQLLNYVLGGCSAISVRDPVSYELLKQ-LGINARLVT--DPAF 182 (385)
T ss_pred HHHHHHcCCCEEEEeccCCCc--------c---CHHHHHHHHHHhcCCcEEEEecHHhHHHHHH-cCCCeEeec--Ccce
Confidence 555677899998876776541 1 1233455567778899999888899988874 699865554 5544
Q ss_pred cCCCChHHHHHHHHHhhhhccCCCCccccccCCCCCCCCccceeeeccccccccCCCCCeEEEEeccCCCCCChHH----
Q 015058 200 FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGI---- 275 (414)
Q Consensus 200 f~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~~~Kg~~~---- 275 (414)
-.|.+.++.... . ...+. +.+.++..-|.+....+.
T Consensus 183 ~L~~~~~~~~~~---~------------------------------------~~~~~-~~~~i~lr~~~~~~t~~~~~~~ 222 (385)
T COG2327 183 LLPASSQNATAS---D------------------------------------VEARE-KTVAITLRGLHPDNTAQRSILK 222 (385)
T ss_pred eccccccccccc---c------------------------------------ccccc-ceEEEEecccCCchhhhHHHHH
Confidence 443321111000 0 01112 235555555555333222
Q ss_pred -HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcC-CCcEEEecCCCChh
Q 015058 276 -LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR-LKRVAFRTMWLSAE 353 (414)
Q Consensus 276 -LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~-l~~V~f~g~~v~~e 353 (414)
+-++........ . ..-.++++-.+.=.+..-.++..+... ..++.+.-.. ..+
T Consensus 223 ~v~~~l~~~~~~~-------------------~-----~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~-~~~ 277 (385)
T COG2327 223 YVNEALDLVERQV-------------------K-----ALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDE-YAE 277 (385)
T ss_pred HHHHHHHHHHHhh-------------------h-----cceEEEeeeccccchhHHHHHHHhhcCCccceEeecch-HHH
Confidence 233333321110 0 011244444555344444444444433 2477776422 257
Q ss_pred hHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 354 DYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 354 d~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
++-..++++|+.|..-. = .++=|++.|.|+|+-...
T Consensus 278 ~~~~~l~~~dl~Vg~R~-------H-saI~al~~g~p~i~i~Y~ 313 (385)
T COG2327 278 ELGGILAACDLIVGMRL-------H-SAIMALAFGVPAIAIAYD 313 (385)
T ss_pred HHHHHhccCceEEeehh-------H-HHHHHHhcCCCeEEEeec
Confidence 78889999999994311 1 246699999999997654
No 155
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=91.68 E-value=0.11 Score=41.76 Aligned_cols=27 Identities=4% Similarity=-0.236 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHcCCeEEEeeeCCccc
Q 015058 375 LDLPMKVCYCWYSRYSLKLLWTCSVVG 401 (414)
Q Consensus 375 ~~lP~kl~Eama~G~Pvi~s~~~~~~~ 401 (414)
.+++++++|+||||.|+|+.+..+...
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~~~~~~ 35 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDSPGLRE 35 (92)
T ss_pred CCCchHHHHHHHCCCeEEECChHHHHH
Confidence 457889999999999999988755443
No 156
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=90.66 E-value=2.2 Score=38.57 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=44.7
Q ss_pred hcCCCcEEEEeCCCCchHHH-HHHHHHhh-c-CCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeC
Q 015058 98 KIASPDVFLVQNPPSVPTLV-AVKWASSL-R-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (414)
Q Consensus 98 k~~~~Dvvh~~~pp~~~~~~-~~~la~~~-~-~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS 174 (414)
+..+||+|++..|. ++.+ ++.+-.+. . ++|++.-+=|+.. . .+ -|+...+|..++.|
T Consensus 86 ~~~~PD~IIsThp~--~~~~~l~~lk~~~~~~~~p~~tvvTD~~~------~--H~----------~W~~~~~D~y~Vas 145 (169)
T PF06925_consen 86 REFQPDLIISTHPF--PAQVPLSRLKRRGRLPNIPVVTVVTDFDT------V--HP----------FWIHPGVDRYFVAS 145 (169)
T ss_pred hhcCCCEEEECCcc--hhhhHHHHHHHhhcccCCcEEEEEcCCCC------C--Cc----------CeecCCCCEEEECC
Confidence 35899999988872 3444 44332222 3 5676543334310 0 11 14558899999999
Q ss_pred HHHHHHHHHhhCCc
Q 015058 175 QAMQHELAQNWGIK 188 (414)
Q Consensus 175 ~~~~~~l~~~~gi~ 188 (414)
+.+++.+.+. |++
T Consensus 146 e~~~~~l~~~-Gi~ 158 (169)
T PF06925_consen 146 EEVKEELIER-GIP 158 (169)
T ss_pred HHHHHHHHHc-CCC
Confidence 9999999985 987
No 157
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=89.77 E-value=1.1 Score=37.24 Aligned_cols=73 Identities=10% Similarity=-0.038 Sum_probs=42.3
Q ss_pred CCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEE
Q 015058 53 HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (414)
Q Consensus 53 ~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv 132 (414)
.+|++++++|.++.-. ....|. +..++.++..++. .+++||||.|...+..+ -=+.+.++..|.+.|+
T Consensus 13 tngLKVYYlP~~~~~~--~~t~Pt--------~~~~~pl~R~Ili-rE~I~IVHgH~a~S~l~-hE~i~hA~~mGlktVf 80 (90)
T PF08288_consen 13 TNGLKVYYLPLKVFYN--QCTLPT--------LFGSFPLLRNILI-RERIDIVHGHQAFSTLC-HEAILHARTMGLKTVF 80 (90)
T ss_pred CCCeEEEeecchhhhc--CcchHH--------HHHhhHHHHHHHH-HcCeeEEEeehhhhHHH-HHHHHHHHhCCCcEEe
Confidence 5789999999433211 111121 1122222222222 38999999998632211 1255667888999999
Q ss_pred EEcCc
Q 015058 133 DWHNF 137 (414)
Q Consensus 133 ~~H~~ 137 (414)
|=|+.
T Consensus 81 TDHSL 85 (90)
T PF08288_consen 81 TDHSL 85 (90)
T ss_pred ecccc
Confidence 88875
No 158
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.84 E-value=3.7 Score=42.52 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=45.1
Q ss_pred cEEEecCCCCh-hhHHHHHhhccEEEeeccCCCCC---CCchhHHHHHHcCCeEEEeeeCCcccc
Q 015058 342 RVAFRTMWLSA-EDYPLLLGSADLGVCLHTSSSGL---DLPMKVCYCWYSRYSLKLLWTCSVVGC 402 (414)
Q Consensus 342 ~V~f~g~~v~~-ed~~~~l~~aDl~V~~~~s~~g~---~lP~kl~Eama~G~Pvi~s~~~~~~~~ 402 (414)
++...| +++. ..++..+.--|+.+..+..+-.. ++++.++|+++||.|.+++...+.-|.
T Consensus 238 ~~~yIg-~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~ 301 (373)
T COG4641 238 NVQYIG-YYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKF 301 (373)
T ss_pred hhhhhh-ccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHh
Confidence 677776 6544 89999999999988543333222 248999999999999999888766554
No 159
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=88.32 E-value=3 Score=40.53 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=36.2
Q ss_pred CCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 339 RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 339 ~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+..++.+.. +.-++..++..||..|+.+ |+ +-+||+..|+||++.-..
T Consensus 180 ~~~~~~~~~---~~~~~~~Ll~~s~~Vvtin-St-------vGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 180 NLPNVVIID---DDVNLYELLEQSDAVVTIN-ST-------VGLEALLHGKPVIVFGRA 227 (269)
T ss_pred cCCCeEEEC---CCCCHHHHHHhCCEEEEEC-CH-------HHHHHHHcCCceEEecCc
Confidence 345677766 6778999999999998542 22 349999999999985443
No 160
>PLN03007 UDP-glucosyltransferase family protein
Probab=84.35 E-value=62 Score=34.55 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=30.8
Q ss_pred CcEEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 341 KRVAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 341 ~~V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
+++...+ |+|..+ +|+.+++ ||+ | .| -+.++|++++|+|+|+
T Consensus 345 ~g~~v~~-w~PQ~~---iL~h~~v~~fvt-H---~G---~nS~~Eal~~GVP~v~ 388 (482)
T PLN03007 345 KGLIIRG-WAPQVL---ILDHQATGGFVT-H---CG---WNSLLEGVAAGLPMVT 388 (482)
T ss_pred CCEEEec-CCCHHH---HhccCccceeee-c---Cc---chHHHHHHHcCCCeee
Confidence 3788886 999865 6777776 552 2 22 2368999999999998
No 161
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=83.32 E-value=9.7 Score=35.03 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=59.6
Q ss_pred EEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEE-EcCC-CCh-HHHHHHHH
Q 015058 260 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKG-PDK-ESYEEKIR 336 (414)
Q Consensus 260 ~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI-~G~G-~~~-e~l~~~i~ 336 (414)
+.+++|.-. +|.||.++.. |-|++|+.. ..+ .+++| +|+| +-- +...+..+
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~-----------------~~~~~~L~k---~G~--~kLiiQ~Grg~~~~~d~~~~~~k 59 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLS-----------------EEFLQELQK---RGF--TKLIIQIGRGQPFFGDPIDLIRK 59 (170)
T ss_pred EEEEecccc----HHHHHHHHcC-----------------HHHHHHHHH---cCc--cEEEEEecCCccCCCCHHHhhcc
Confidence 556676654 8889888642 224444433 012 35555 8998 321 22222223
Q ss_pred HcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 337 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 337 ~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
.-|+. |.... ....+.++++.||+.++ |. |-| .++|-+..|+|.|+-..
T Consensus 60 ~~gl~-id~y~---f~psl~e~I~~AdlVIs-HA---GaG---S~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 60 NGGLT-IDGYD---FSPSLTEDIRSADLVIS-HA---GAG---SCLETLRLGKPLIVVVN 108 (170)
T ss_pred cCCeE-EEEEe---cCccHHHHHhhccEEEe-cC---Ccc---hHHHHHHcCCCEEEEeC
Confidence 33333 33333 67788889999999995 22 222 68999999999997543
No 162
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.19 E-value=10 Score=38.15 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=44.0
Q ss_pred EEEcCC-CChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 320 IITGKG-PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 320 iI~G~G-~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
+++|.+ |..+.+...++++ .++.+.- ..+|++.++..||+.++. . ++.+.|+...|+|.++
T Consensus 190 iV~gs~~p~l~~l~k~~~~~--~~i~~~~---~~~dma~LMke~d~aI~A----a----GstlyEa~~lgvP~l~ 251 (318)
T COG3980 190 IVVGSSNPTLKNLRKRAEKY--PNINLYI---DTNDMAELMKEADLAISA----A----GSTLYEALLLGVPSLV 251 (318)
T ss_pred EEecCCCcchhHHHHHHhhC--CCeeeEe---cchhHHHHHHhcchheec----c----chHHHHHHHhcCCceE
Confidence 345554 5566666666553 2777765 899999999999999942 1 3468999999999544
No 163
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.32 E-value=14 Score=34.41 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEE-EEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv-~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~ 178 (414)
.+||+++.--.-..|.++ ..++..|+|+++ +-.-... ++... +-++++.+.+.+..|.|.+.|++.+
T Consensus 94 ~~P~~~i~~EtElWPnll---~~a~~~~ip~~LvNarls~~-----s~~~~----~~~~~~~r~~l~~f~~i~aqs~~da 161 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNLL---REAKRRGIPVVLVNARLSER-----SFRRY----RRFPFLFRPLLSRFDRILAQSEADA 161 (186)
T ss_dssp H--SEEEEES----HHHH---HH-----S-EEEEEE-----------------------HHHHHHGGG-SEEEESSHHHH
T ss_pred hCCCEEEEEccccCHHHH---HHHhhcCCCEEEEeeeeccc-----cchhh----hhhHHHHHHHHHhCCEEEECCHHHH
Confidence 589988777553334433 234557899876 3333221 11111 1224455677789999999999999
Q ss_pred HHHHHhhCCc---EEEec
Q 015058 179 HELAQNWGIK---ATVLY 193 (414)
Q Consensus 179 ~~l~~~~gi~---i~vI~ 193 (414)
+.+++. |.+ +.+.-
T Consensus 162 ~r~~~l-G~~~~~v~v~G 178 (186)
T PF04413_consen 162 ERFRKL-GAPPERVHVTG 178 (186)
T ss_dssp HHHHTT-T-S--SEEE--
T ss_pred HHHHHc-CCCcceEEEeC
Confidence 999875 776 55543
No 164
>PLN02208 glycosyltransferase family protein
Probab=74.23 E-value=1.2e+02 Score=32.05 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 330 SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 330 ~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
.+++.++.. ++...+ |+|..+ +|+-..+ ||+ | .| -+.++|++++|+|+|+-
T Consensus 303 ~f~~r~~~~---g~~v~~-W~PQ~~---iL~H~~v~~Fvt-H---cG---~nS~~Eai~~GVP~l~~ 355 (442)
T PLN02208 303 GFEERVKGR---GVVWGG-WVQQPL---ILDHPSIGCFVN-H---CG---PGTIWESLVSDCQMVLI 355 (442)
T ss_pred HHHHHHhcC---CcEeec-cCCHHH---HhcCCccCeEEc-c---CC---chHHHHHHHcCCCEEec
Confidence 444444432 566665 999888 4555665 552 2 22 24689999999999983
No 165
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=72.63 E-value=5.1 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEee
Q 015058 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (414)
Q Consensus 23 ~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~ 62 (414)
-.+..|.++ ||||.+.+... ..+..+..|++++.++
T Consensus 17 ala~~L~~r-Gh~V~~~~~~~---~~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 17 ALARALRRR-GHEVRLATPPD---FRERVEAAGLEFVPIP 52 (139)
T ss_dssp HHHHHHHHT-T-EEEEEETGG---GHHHHHHTT-EEEESS
T ss_pred HHHHHHhcc-CCeEEEeeccc---ceecccccCceEEEec
Confidence 466888886 99999888543 3344467899998887
No 166
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=72.40 E-value=12 Score=39.93 Aligned_cols=216 Identities=16% Similarity=0.176 Sum_probs=115.1
Q ss_pred HHHHHHHhccCCEEEEeCHHHHHHHHHhhCCc-EEEecCC-CCCCcCCCCh-HHHHHHHHHhhhhccCCCCccccccCCC
Q 015058 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSL-EEKHELFCRLNKILHQPLGVQDCVSNGM 233 (414)
Q Consensus 157 ~~~Ek~~~k~ad~ii~vS~~~~~~l~~~~gi~-i~vI~n~-~~~~f~p~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 233 (414)
+.+|+.....|+...+|||-..-+......-+ =.+.||| ....|...-. ...|+..+. . .|++|.
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAeHlLkRKPD~itPNGLNV~KFsA~HEFQNLHA~~Ke-k--------IndFVR--- 310 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAEHLLKRKPDVITPNGLNVKKFSAVHEFQNLHAQKKE-K--------INDFVR--- 310 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCCeeCCCCcceeehhHHHHHHHHHHHHHH-H--------HHHHhh---
Confidence 45688888899999999996654332222222 4567999 6655643210 011222111 0 122221
Q ss_pred CCCCCccceeeeccccccccCCCCCeEEEEeccCC-CCCChHHHHHHHHHhHHHHhhhhccCCCc--------------h
Q 015058 234 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDST--------------N 298 (414)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vgrl~-~~Kg~~~LleA~~~l~~~~~~~~~~~~~~--------------~ 298 (414)
.-| .|-+.++-++.+..+.+||.. ..||-|.+|||++++.-... ...++.| |
T Consensus 311 -------GHF----~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk--~~~s~~TVVaFlImPaktN~Fn 377 (692)
T KOG3742|consen 311 -------GHF----HGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLK--VSGSPKTVVAFLIMPAKTNSFN 377 (692)
T ss_pred -------hhc----cccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHe--ecCCCceEEEEEEeecCCCccc
Confidence 112 244444445556677888886 57999999999988753210 1111111 1
Q ss_pred hh--------------------hhhhhhcC----C------------------------ccCCCCcEEE-EEEcCCCChH
Q 015058 299 EE--------------------VFLKEISD----G------------------------KQYLYPRLLF-IITGKGPDKE 329 (414)
Q Consensus 299 ~~--------------------~~~~~~~~----~------------------------~~~~~p~i~l-iI~G~G~~~e 329 (414)
-| -|=|.|-| | ..+..|.+.- -++-+. .+
T Consensus 378 VesLkgqAv~kqL~dtv~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa--~D 455 (692)
T KOG3742|consen 378 VESLKGQAVRKQLWDTVNEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDA--ND 455 (692)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccc--cc
Confidence 11 11111110 0 0112222211 223221 12
Q ss_pred HHHHHHHHcCC----C---cEEEecCCCC------hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 330 SYEEKIRRLRL----K---RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 330 ~l~~~i~~l~l----~---~V~f~g~~v~------~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
-+-+.|++-+| . .|+|...+++ .-||.++...|+++|+|++-..+ | -.--||--+|+|-|.++.
T Consensus 456 piL~~iRr~~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPW-G--YTPAECTVMGiPSvtTNl 532 (692)
T KOG3742|consen 456 PILSSIRRIGLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPW-G--YTPAECTVMGIPSVTTNL 532 (692)
T ss_pred hHHHHhHhhhcccCcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccccCCC-C--CCchheEEeccccccccc
Confidence 34445666665 1 4566644433 34899999999999988543221 1 123688899999999999
Q ss_pred CCcccch
Q 015058 397 CSVVGCL 403 (414)
Q Consensus 397 ~~~~~~~ 403 (414)
.|. ||-
T Consensus 533 SGF-Gcf 538 (692)
T KOG3742|consen 533 SGF-GCF 538 (692)
T ss_pred cch-hhh
Confidence 884 553
No 167
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=70.61 E-value=37 Score=32.46 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 015058 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (414)
Q Consensus 24 ~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~D 103 (414)
.|+.|.++ ||+|.++=..+........+....+++.-. .. .. +.+.++ -..+.|
T Consensus 15 va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd--~t-------~~-------~~L~~a---------gi~~aD 68 (225)
T COG0569 15 VARELSEE-GHNVVLIDRDEERVEEFLADELDTHVVIGD--AT-------DE-------DVLEEA---------GIDDAD 68 (225)
T ss_pred HHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEEEec--CC-------CH-------HHHHhc---------CCCcCC
Confidence 57899996 999999986654311111112344444333 21 11 122221 236899
Q ss_pred EEEEeCCCCchHHHHHHHHHhhcCCeEEE-EEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHHHHH
Q 015058 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELA 182 (414)
Q Consensus 104 vvh~~~pp~~~~~~~~~la~~~~~~~~Iv-~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~~l~ 182 (414)
++.+-+.-.....+++.++.+..|+|-++ ..++..+ .+.++. -.+|.++...+.+...+.
T Consensus 69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~-------------~~~~~~------~g~~~ii~Pe~~~~~~l~ 129 (225)
T COG0569 69 AVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEH-------------EKVLEK------LGADVIISPEKLAAKRLA 129 (225)
T ss_pred EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHH-------------HHHHHH------cCCcEEECHHHHHHHHHH
Confidence 98888764445667788888878888765 5555322 111111 137999999999988887
Q ss_pred Hhh
Q 015058 183 QNW 185 (414)
Q Consensus 183 ~~~ 185 (414)
+.-
T Consensus 130 ~~i 132 (225)
T COG0569 130 RLI 132 (225)
T ss_pred HHh
Confidence 653
No 168
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=68.09 E-value=14 Score=37.75 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=59.1
Q ss_pred CCcEE-E-EEEcCCC-----ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHH----hhccEEEeeccCCCCCCCchhHH
Q 015058 314 YPRLL-F-IITGKGP-----DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL----GSADLGVCLHTSSSGLDLPMKVC 382 (414)
Q Consensus 314 ~p~i~-l-iI~G~G~-----~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l----~~aDl~V~~~~s~~g~~lP~kl~ 382 (414)
.|+++ + +++..|+ ..++++..++..|++-|... --+.+|++... +..|++..|......-++...+-
T Consensus 156 ~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~--v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~ 233 (322)
T COG2984 156 LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAA--VTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ 233 (322)
T ss_pred CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEe--cCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Confidence 47774 4 5677776 34778888888999844442 22566766655 45587765532222224677889
Q ss_pred HHHHcCCeEEEeeeCCc-ccch
Q 015058 383 YCWYSRYSLKLLWTCSV-VGCL 403 (414)
Q Consensus 383 Eama~G~Pvi~s~~~~~-~~~~ 403 (414)
++...++|+++++++.| .||+
T Consensus 234 ~a~~~kiPli~sd~~~V~~Ga~ 255 (322)
T COG2984 234 VANKAKIPLIASDTSSVKEGAL 255 (322)
T ss_pred HHHHhCCCeecCCHHHHhcCcc
Confidence 99999999999998876 3443
No 169
>PRK08328 hypothetical protein; Provisional
Probab=67.23 E-value=17 Score=34.90 Aligned_cols=73 Identities=15% Similarity=-0.025 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH--HHHcCCeEEEeeeCCcccchhh
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY--CWYSRYSLKLLWTCSVVGCLFV 405 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E--ama~G~Pvi~s~~~~~~~~~~~ 405 (414)
+...+.+++++-. +|.-....+..+++..++..+|+.+....+.. ....+. |...|+|+|...+.|..|-+.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~----~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~ 160 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFE----TRYLLDDYAHKKGIPLVHGAVEGTYGQVTT 160 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH----HHHHHHHHHHHcCCCEEEEeeccCEEEEEE
Confidence 3445566776655 55544446777888889999999985433211 234555 7889999999999998886653
No 170
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=65.41 E-value=35 Score=35.86 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 314 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 314 ~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
.|. +|+..=+|...+.+. +|+.... |+|..|+-. -...++||+ |. | -+.+.||+++|+|+|+
T Consensus 305 ~~~-~~iW~~~~~~~~~l~--------~n~~~~~-W~PQ~~lL~-hp~v~~fit-Hg---G---~~s~~Ea~~~gvP~l~ 366 (500)
T PF00201_consen 305 LPQ-RFIWKYEGEPPENLP--------KNVLIVK-WLPQNDLLA-HPRVKLFIT-HG---G---LNSTQEALYHGVPMLG 366 (500)
T ss_dssp STT-EEEEEETCSHGCHHH--------TTEEEES-S--HHHHHT-STTEEEEEE-S--------HHHHHHHHHCT--EEE
T ss_pred CCC-ccccccccccccccc--------ceEEEec-cccchhhhh-cccceeeee-cc---c---cchhhhhhhccCCccC
Confidence 454 777765663222221 2787775 999876621 134566773 32 2 3468999999999998
Q ss_pred ee
Q 015058 394 LW 395 (414)
Q Consensus 394 s~ 395 (414)
.-
T Consensus 367 ~P 368 (500)
T PF00201_consen 367 IP 368 (500)
T ss_dssp -G
T ss_pred CC
Confidence 43
No 171
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=64.79 E-value=14 Score=36.49 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccE
Q 015058 313 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADL 364 (414)
Q Consensus 313 ~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl 364 (414)
..|+..|+.+|+|++++ +.++.+++.-+..- ++.|+..++.+-++
T Consensus 227 g~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~----~h~Dl~~l~~aL~l 271 (274)
T TIGR01658 227 GHPKVRFCAIGDGWEEC---TAAQAMNWPFVKID----LHPDSSHRFPGLTL 271 (274)
T ss_pred CCCCceEEEeCCChhHH---HHHHhcCCCeEEee----cCCCHHHhCccCCc
Confidence 46789999999999866 56778888744442 46666666655443
No 172
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=63.13 E-value=1.2e+02 Score=27.72 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=36.3
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
++.......+.+++-.+++.||+.|+.- -. ..+=|++.|+|+|+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~Is~R--lH------~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 238 NVIIIDYSLSPDELLELISQADLVISMR--LH------GAILALSLGVPVIAISYD 285 (286)
T ss_pred ceeEecCCCCHHHHHHHHhcCCEEEecC--CH------HHHHHHHcCCCEEEEecC
Confidence 4555545779999999999999999531 11 246699999999997654
No 173
>PLN03004 UDP-glycosyltransferase
Probab=60.97 E-value=60 Score=34.59 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=31.8
Q ss_pred cEEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
++...+ |+|..+ +|+-+++ ||+ | .|. +.++|++++|+|+|+-
T Consensus 335 g~~v~~-W~PQ~~---iL~H~~v~~FvT-H---~G~---nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 335 GMVVKS-WAPQVP---VLNHKAVGGFVT-H---CGW---NSILEAVCAGVPMVAW 378 (451)
T ss_pred cEEEEe-eCCHHH---HhCCCccceEec-c---Ccc---hHHHHHHHcCCCEEec
Confidence 677776 999888 6778888 552 2 222 3689999999999983
No 174
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=60.39 E-value=25 Score=36.60 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=48.7
Q ss_pred EEEEEEcCCCChHHHHHHHH----H----cCC-C-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHH
Q 015058 317 LLFIITGKGPDKESYEEKIR----R----LRL-K-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWY 386 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~----~----l~l-~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama 386 (414)
+++++.+ |.-.+.+.+... . ... + .+..+. +++.+++..+|-+||+.++ .||+ ..+=|.-
T Consensus 211 v~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lP-F~~Q~~yD~LLw~cD~NfV-----RGED---SfVRAqw 280 (374)
T PF10093_consen 211 VHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLP-FVPQDDYDRLLWACDFNFV-----RGED---SFVRAQW 280 (374)
T ss_pred eEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECC-CCCHHHHHHHHHhCccceE-----ecch---HHHHHHH
Confidence 6776664 566666644432 0 111 2 688884 9999999999999999764 3565 5688999
Q ss_pred cCCeEEEeee
Q 015058 387 SRYSLKLLWT 396 (414)
Q Consensus 387 ~G~Pvi~s~~ 396 (414)
+|+|-|=--.
T Consensus 281 AgkPFvWhIY 290 (374)
T PF10093_consen 281 AGKPFVWHIY 290 (374)
T ss_pred hCCCceEecC
Confidence 9999875433
No 175
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=59.84 E-value=54 Score=32.16 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHh----hccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 328 KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 328 ~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~----~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
.+.+++.++++|++ ...-.. +.+|+...+. ..|+++.+..+...-.....+..+..+++||++++.
T Consensus 149 ~~~~~~~a~~~g~~l~~~~v~---~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 149 IEQLRKAAKKLGIELVEIPVP---SSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp HHHHHHHHHHTT-EEEEEEES---SGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSH
T ss_pred HHHHHHHHHHcCCEEEEEecC---cHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCH
Confidence 45777778888887 333333 5667766665 457666442211111223344566789999999774
No 176
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=59.62 E-value=13 Score=32.05 Aligned_cols=76 Identities=17% Similarity=0.065 Sum_probs=44.5
Q ss_pred EEEEEEcC-CCChHHHHHHHHH-cCCCcEEEecCCC--C---------------------hhhHHHHHhhccEEEeeccC
Q 015058 317 LLFIITGK-GPDKESYEEKIRR-LRLKRVAFRTMWL--S---------------------AEDYPLLLGSADLGVCLHTS 371 (414)
Q Consensus 317 i~liI~G~-G~~~e~l~~~i~~-l~l~~V~f~g~~v--~---------------------~ed~~~~l~~aDl~V~~~~s 371 (414)
+++.|+|- |.--..+.+.+.+ -+.+ +.+... + .+++..++..+|+.|=.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~---lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-- 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFE---LVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-- 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEE---EEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcE---EEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--
Confidence 46788998 8887777777777 3333 222111 1 257899999999988221
Q ss_pred CCCCCCchhHHHHHHcCCeEEEeeeCC
Q 015058 372 SSGLDLPMKVCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 372 ~~g~~lP~kl~Eama~G~Pvi~s~~~~ 398 (414)
. ...+..-+-.|...|+|+|...|+-
T Consensus 76 ~-p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 76 N-PDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp --HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred C-hHHhHHHHHHHHhCCCCEEEECCCC
Confidence 1 1112334555688999999876654
No 177
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=58.96 E-value=1.3e+02 Score=28.04 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcchhhhhhccCCCcHHHHHHHHHHHHHhccCCEEEEeCHHHHH
Q 015058 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (414)
Q Consensus 100 ~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~~~l~~~~~~~~~~~~~i~~~~Ek~~~k~ad~ii~vS~~~~~ 179 (414)
..+|++++.+.-.+ .-+..+...+.++|.++-+|.--.+-. .+-+..+-+ -+.++.=+..--||.|+..|+--.+
T Consensus 58 ~~~dll~aTsmldL--a~l~gL~p~l~~~p~ilYFHENQl~YP-~~~~~~rd~--~~~~~ni~saLaAD~v~FNS~~nr~ 132 (168)
T PF12038_consen 58 HSYDLLFATSMLDL--ATLRGLRPDLANVPKILYFHENQLAYP-VSPGQERDF--QYGMNNIYSALAADRVVFNSAFNRD 132 (168)
T ss_pred cCCCEEEeeccccH--HHHHhhccCCCCCCEEEEEecCcccCC-CCCCccccc--cHHHHHHHHHHhceeeeecchhhHH
Confidence 67899999976222 222334456678999999997522110 011111111 1111111222368999999997766
Q ss_pred HHH
Q 015058 180 ELA 182 (414)
Q Consensus 180 ~l~ 182 (414)
..-
T Consensus 133 sFL 135 (168)
T PF12038_consen 133 SFL 135 (168)
T ss_pred HHH
Confidence 543
No 178
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=58.28 E-value=85 Score=29.94 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=20.9
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCC
Q 015058 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~ 43 (414)
..+|+. |.=|..+.|.+..++|.+.-.-.-.|++..+
T Consensus 40 ~~lVvl-GSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD 76 (211)
T KOG3339|consen 40 STLVVL-GSGGHTGEMLRLLEALQDLYSPRSYIAADTD 76 (211)
T ss_pred eEEEEE-cCCCcHHHHHHHHHHHHhhcCceEEEEecCc
Confidence 345544 4446778888888888554111234455444
No 179
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=57.45 E-value=84 Score=32.10 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=61.5
Q ss_pred CEEEEEEeCCCC---CChHHHHHHHHHHhhCCCcEEEEecCCCCCCc------------ccccCCCeEEEEeecCCCCCC
Q 015058 5 GRACVVVLGDLG---RSPRMQYQALSLARQMSLEVDVVAYGGSKPHA------------AILEHPSIHIHTMTQWPTIPR 69 (414)
Q Consensus 5 ~~~~v~~~~d~~---~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~------------~~~~~~~i~i~~v~~~~~~~~ 69 (414)
++.+++=.+..+ .|.-+......|.++ ||.|-|++-+++.|+. .+..++|+.+..++ ....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~--srG~- 124 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP--SRGT- 124 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC--CCcc-
Confidence 344455444444 344566677788785 9999999988766532 12236888888887 4322
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcc
Q 015058 70 GLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (414)
Q Consensus 70 ~~~~~~~~~~~l~k~l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~ 138 (414)
+...-...+-..+. | ....||+|++-+--...+-+.. .....+-+++..++.+
T Consensus 125 -lGGlS~at~~~i~~-----------l-dAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~G 177 (323)
T COG1703 125 -LGGLSRATREAIKL-----------L-DAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAG 177 (323)
T ss_pred -chhhhHHHHHHHHH-----------H-HhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCC
Confidence 11111111111121 2 3489999999975222221211 2233445555555554
No 180
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=56.52 E-value=25 Score=34.17 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=43.6
Q ss_pred HHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccch
Q 015058 331 YEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCL 403 (414)
Q Consensus 331 l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~ 403 (414)
..+.+++++-. +|......+..++.+.+++.+|+.|....+.. .-..+-+ |...++|+|...+.|..|-+
T Consensus 91 a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---~r~~ln~~~~~~~ip~v~~~~~g~~G~v 162 (245)
T PRK05690 91 ARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---TRNQLNRACFAAKKPLVSGAAIRMEGQV 162 (245)
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---HHHHHHHHHHHhCCEEEEeeeccCCceE
Confidence 34455555544 55555556677788899999999885432221 1112333 46789999998777666654
No 181
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=53.51 E-value=72 Score=31.40 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCCCCC-CCchhHHHHHHcCCeEEEeeeC
Q 015058 326 PDKESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 326 ~~~e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~-~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
|..+.++ .+.++|+. ++...-|..+.+.=..++...++-++....|.+. ++..|+-=|+..|+|||.-.=.
T Consensus 159 P~~~~l~-~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 159 PYPQALA-QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred CCchhhH-HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 4444554 45566664 4333322334554455555544433222233222 4677887778888888874433
No 182
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=53.33 E-value=32 Score=35.14 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecC----------CCChhhHHHHHhhccEEEeeccCCCCCCCchhHH
Q 015058 313 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTM----------WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVC 382 (414)
Q Consensus 313 ~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~----------~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~ 382 (414)
..||.-++|.|.=.-.+.||+..+.+|++-++.-|. ...++|+|..+...-+.|+ .|.++|.++.
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv-----~GwDy~~~~~ 148 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVV-----YGWDYADALM 148 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEE-----eccccHHHHH
Confidence 367744444433334678999999999975555431 1234556666666556664 2556777999
Q ss_pred HHHHcCC-eEEEeeeCCc
Q 015058 383 YCWYSRY-SLKLLWTCSV 399 (414)
Q Consensus 383 Eama~G~-Pvi~s~~~~~ 399 (414)
|+|--|+ |++.+++...
T Consensus 149 e~~k~~~~p~~~~n~~~~ 166 (337)
T COG2247 149 ELMKEGIVPVILKNTSIL 166 (337)
T ss_pred HHHhcCcceeEecccccc
Confidence 9998874 6666665443
No 183
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=53.24 E-value=75 Score=27.25 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=49.8
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeCCcccc
Q 015058 328 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTCSVVGC 402 (414)
Q Consensus 328 ~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~~~~~~ 402 (414)
.+.-.+.+++ +. .|.+.. ..+.+++...+..+|+.++...+ .+...+++.+ -++-+|++...|+.-.
T Consensus 8 ~~~~~~~l~~-~~-~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~----~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 8 PDEEIERLEE-GF-EVEFCD-SPSEEELAERLKDADAIIVGSGT----PLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp SHHHHHHHHH-TS-EEEEES-SSSHHHHHHHHTTESEEEESTTS----TBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred CHHHHHHHHC-Cc-eEEEeC-CCCHHHHHHHhCCCeEEEEcCCC----CcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 4455556666 66 899986 77899999999999999853221 3677888888 8999999888777643
No 184
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=53.06 E-value=63 Score=34.60 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=29.1
Q ss_pred cEEEecCCCChhhHHHHHhh--ccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 342 RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~--aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
++...+ |+|..+ +|+- .+.||. |. | -+.++|++++|+|+|+
T Consensus 344 g~~v~~-w~PQ~~---vL~h~~v~~fvt-H~---G---~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 344 GLVIRG-WAPQVA---ILSHRAVGAFLT-HC---G---WNSVLEGLVAGVPMLA 386 (477)
T ss_pred CEEecC-CCCHHH---HhcCCCcCeEEe-cC---C---chHHHHHHHcCCCEEe
Confidence 677776 999866 4554 566663 21 2 2368999999999998
No 185
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=52.75 E-value=59 Score=30.45 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCC--hhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchh
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLS--AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLF 404 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~--~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~ 404 (414)
+...+.+++++.. +|......+. .++.+.++..+|+.+....+. ..-..+-+ |...++|++.+.+.|..|..+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~---~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 154 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENY---ERTAKVNDVCRKHHIPFISCATYGLIGYAF 154 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEeecCEEEEE
Confidence 4667778887766 6666543343 567888999999988542211 11111222 477899999999999999887
Q ss_pred hhh
Q 015058 405 VLF 407 (414)
Q Consensus 405 ~~~ 407 (414)
.-+
T Consensus 155 ~~~ 157 (198)
T cd01485 155 FDF 157 (198)
T ss_pred Ech
Confidence 543
No 186
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=52.59 E-value=64 Score=36.95 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=72.0
Q ss_pred ccCCCCCeEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCC-CCh-
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK- 328 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G-~~~- 328 (414)
.++|+. +.++.+-|+++.|.+.. ++....++.+ |.++.+.......|++.|+. |.-
T Consensus 525 ~ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~ 583 (797)
T cd04300 525 EVDPDS-LFDVQVKRIHEYKRQLLNVLHIIHLYNR--------------------IKENPNADIVPRTFIFGGKAAPGYY 583 (797)
T ss_pred ccCCCc-cEEEEeeechhhhhhhhHHHhhHHHHHH--------------------HHhCCCcCCCCeEEEEeccCCCCcH
Confidence 356666 58999999999999988 7777666654 11211111223789999985 322
Q ss_pred --HHHHHHHHHcC--------C--C-cEEEecCCCChhhHHHHHhhccEEEeecc---CCCCCCCchhHHHHHHcCCeEE
Q 015058 329 --ESYEEKIRRLR--------L--K-RVAFRTMWLSAEDYPLLLGSADLGVCLHT---SSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 329 --e~l~~~i~~l~--------l--~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~---s~~g~~lP~kl~Eama~G~Pvi 392 (414)
+.+.++|.+.. + . +|.|+. --.-+--..++.+||+-...++ .-||.+ .|| +|.=|.+.+
T Consensus 584 ~aK~iIklI~~va~~in~Dp~v~~~lkVVFle-nY~VslAe~iipaaDvseqis~ag~EASGTs-nMK---~~lNGaltl 658 (797)
T cd04300 584 MAKLIIKLINAVADVVNNDPDVGDKLKVVFLP-NYNVSLAEKIIPAADLSEQISTAGKEASGTG-NMK---FMLNGALTI 658 (797)
T ss_pred HHHHHHHHHHHHHHHhccChhcCCceEEEEeC-CCChHHHHHhhhhhhhhhhCCCCCccccCCc-hhh---HHhcCceee
Confidence 22333333321 2 2 699986 4366677788999999863222 124443 333 677788888
Q ss_pred Ee
Q 015058 393 LL 394 (414)
Q Consensus 393 ~s 394 (414)
++
T Consensus 659 gt 660 (797)
T cd04300 659 GT 660 (797)
T ss_pred ec
Confidence 87
No 187
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=51.53 E-value=39 Score=29.17 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccch
Q 015058 327 DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCL 403 (414)
Q Consensus 327 ~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~ 403 (414)
.-+.+++.+++.... +|.-....+..+....+++.+|+.|+...+. ..-..+-+ |...++|+|.+.+.|..|-+
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~---~~~~~l~~~~~~~~~p~i~~~~~g~~G~~ 132 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSL---AARLLLNEICREYGIPFIDAGVNGFYGQV 132 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSH---HHHHHHHHHHHHTT-EEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCH---HHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 346778888888766 7777665667889999999999988643221 11112333 46689999999999988754
No 188
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=51.11 E-value=39 Score=31.70 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchhhh
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLFVL 406 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~~~ 406 (414)
+.+.+.+++++-. +|......++.+++..+++.+|+.|....+.. ....+-+ |...++|.|.+.+.|..|...+.
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~ 154 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---TRYLINDACVALGTPLISAAVVGFGGQLMVF 154 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---HHHHHHHHHHHcCCCEEEEEeccCeEEEEEE
Confidence 4556666666655 66655556677888999999999885422211 1112333 47799999999988888876543
No 189
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=49.96 E-value=41 Score=32.06 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=51.1
Q ss_pred hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchh
Q 015058 328 KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLF 404 (414)
Q Consensus 328 ~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~ 404 (414)
-+.+.+.+++++-. +|......+..+++..++..+|+.|....+... -..+-+ |...++|.|...+.|..|-+.
T Consensus 77 a~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~---r~~l~~~~~~~~ip~i~~g~~g~~g~v~ 152 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFAT---RYLINDACVKLGKPLVSGAVLGFEGQVT 152 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHH---HHHHHHHHHHcCCCEEEEEeccCEEEEE
Confidence 35677778887766 677665567778899999999998854222111 112222 467899999999988887654
No 190
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=49.06 E-value=76 Score=33.31 Aligned_cols=71 Identities=24% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCC------------------ChhhHHHHHhh--ccEEEeeccCCCCC-CCchhHHH
Q 015058 325 GPDKESYEEKIRRLRLKRVAFRTMWL------------------SAEDYPLLLGS--ADLGVCLHTSSSGL-DLPMKVCY 383 (414)
Q Consensus 325 G~~~e~l~~~i~~l~l~~V~f~g~~v------------------~~ed~~~~l~~--aDl~V~~~~s~~g~-~lP~kl~E 383 (414)
|...+.+.+++++.+.+.|.... .- -.+.+.++.+. +|+.|.. ..|. ++ ..+++
T Consensus 36 ~~n~~~l~~q~~~f~p~~v~i~~-~~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~A---i~G~aGl-~ptl~ 110 (385)
T PRK05447 36 GKNVELLAEQAREFRPKYVVVAD-EEAAKELKEALAAAGIEVLAGEEGLCELAALPEADVVVAA---IVGAAGL-LPTLA 110 (385)
T ss_pred CCCHHHHHHHHHHhCCCEEEEcC-HHHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEe---CcCcccH-HHHHH
Confidence 55666666666666655443322 00 14445555554 4666643 2222 34 34889
Q ss_pred HHHcCCeEEEeeeCCcc
Q 015058 384 CWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 384 ama~G~Pvi~s~~~~~~ 400 (414)
|+.+|++|...+-...+
T Consensus 111 Ai~aGK~VaLANKEslV 127 (385)
T PRK05447 111 AIRAGKRIALANKESLV 127 (385)
T ss_pred HHHCCCcEEEeCHHHHH
Confidence 99999999998877765
No 191
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=48.98 E-value=48 Score=30.46 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCcEEEEEEcCCCC-hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 314 YPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 314 ~p~i~liI~G~G~~-~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
..+-+.+|+|.|.. ...+-....+.|. +|.... + ..+++...++.||+.|+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~-r-~~~~l~~~l~~aDiVIsa 94 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCH-S-KTKNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEE-C-CchhHHHHHhhCCEEEEc
Confidence 34578999999975 4445556666676 476665 3 457899999999999965
No 192
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=48.54 E-value=4.5e+02 Score=29.96 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred ccCCCCCeEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCC-CCh-
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK- 328 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G-~~~- 328 (414)
.++|+. +.++++.|+++.|.... ++..+..+.+ +|+..+ ....| +.|++.|+. |.-
T Consensus 439 ~ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~r-----------------ik~~p~--~~~~P-v~~IFaGKAhP~d~ 497 (713)
T PF00343_consen 439 ELDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNR-----------------IKNNPN--KKIRP-VQFIFAGKAHPGDY 497 (713)
T ss_dssp ---TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHH-----------------HHHSTT--SCCS--EEEEEE----TT-H
T ss_pred CCCcch-hhhhhhhhcccccccCcccccHHHHHHH-----------------HHhccc--CCCCC-eEEEEeccCCCCcH
Confidence 356665 68899999999999877 4555555443 111111 01234 899999986 322
Q ss_pred --HHHHHHHHHc--------CCC---cEEEecCCCChhhHHHHHhhccEEEeeccC---CCCCCCchhHHHHHHcCCeEE
Q 015058 329 --ESYEEKIRRL--------RLK---RVAFRTMWLSAEDYPLLLGSADLGVCLHTS---SSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 329 --e~l~~~i~~l--------~l~---~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s---~~g~~lP~kl~Eama~G~Pvi 392 (414)
+++.++|.+. .++ +|.|+- --.-+--..++.+||+-...++. .||. .=+=+|.=|.+.+
T Consensus 498 ~gK~iIk~I~~va~~in~Dp~v~~~lkVvFle-nYdvslA~~lipg~DVwln~p~~p~EASGT----SgMK~~~NGaL~l 572 (713)
T PF00343_consen 498 MGKEIIKLINNVAEVINNDPEVGDRLKVVFLE-NYDVSLAEKLIPGVDVWLNIPTRPKEASGT----SGMKAAMNGALNL 572 (713)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTTCCGEEEEEET-T-SHHHHHHHGGG-SEEEE---TTSSSS-S----HHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHHHhcChhhccceeEEeec-CCcHHHHHHHhhhhhhhhhCCCCCccccCC----CcchhhcCCCeEE
Confidence 2333333322 233 689996 33666777889999998743221 2333 3344778888888
Q ss_pred EeeeC
Q 015058 393 LLWTC 397 (414)
Q Consensus 393 ~s~~~ 397 (414)
++-.+
T Consensus 573 stlDG 577 (713)
T PF00343_consen 573 STLDG 577 (713)
T ss_dssp EESST
T ss_pred ecccc
Confidence 76443
No 193
>PLN02167 UDP-glycosyltransferase family protein
Probab=48.22 E-value=60 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.9
Q ss_pred cEEEecCCCChhhHHHHHhh--ccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 342 RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~--aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
++...+ |+|..+ +|+- .+.||. |. |- +.++|++++|+|+|+-
T Consensus 341 rg~v~~-w~PQ~~---iL~h~~vg~fvt-H~---G~---nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 341 RGLVCG-WAPQVE---ILAHKAIGGFVS-HC---GW---NSVLESLWFGVPIATW 384 (475)
T ss_pred Ceeeec-cCCHHH---HhcCcccCeEEe-eC---Cc---ccHHHHHHcCCCEEec
Confidence 455565 998777 4555 445663 32 21 2589999999999983
No 194
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=46.48 E-value=3.1e+02 Score=28.59 Aligned_cols=39 Identities=10% Similarity=-0.048 Sum_probs=31.3
Q ss_pred ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 351 SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 351 ~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
+..|+..+|..+|+.|. . ..+..+|+|....||+.-.-+
T Consensus 276 ~~~di~dll~~sDiLIT-D-------ySSv~fdf~~l~KPiify~~D 314 (388)
T COG1887 276 DNADINDLLLVSDILIT-D-------YSSVIFDFMLLDKPIIFYTYD 314 (388)
T ss_pred cchhHHHHHhhhCEEEe-e-------chHHHHHHHHhcCcEEEEecC
Confidence 45899999999999994 2 234689999999999975443
No 195
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=46.33 E-value=65 Score=36.86 Aligned_cols=128 Identities=19% Similarity=0.146 Sum_probs=78.6
Q ss_pred ccCCCCCeEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCC-CCh-
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK- 328 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G-~~~- 328 (414)
.++|+. +..+.+-|+++.|.+.. ++....++.+ |.++.+.......|++.|+. |.-
T Consensus 522 ~ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~ 580 (794)
T TIGR02093 522 EVDPNS-IFDVQVKRLHEYKRQLLNVLHVIYLYNR--------------------IKEDPPKDIVPRTVIFGGKAAPGYH 580 (794)
T ss_pred ccCccc-cchhhheechhhhHHHHHHhhhHHHHHH--------------------HHhCCCcCCCCeEEEEEecCCCCcH
Confidence 356666 57889999999999987 7777666654 11111111223789999985 322
Q ss_pred --HHHHHHHHHcC--------CC---cEEEecCCCChhhHHHHHhhccEEEeecc---CCCCCCCchhHHHHHHcCCeEE
Q 015058 329 --ESYEEKIRRLR--------LK---RVAFRTMWLSAEDYPLLLGSADLGVCLHT---SSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 329 --e~l~~~i~~l~--------l~---~V~f~g~~v~~ed~~~~l~~aDl~V~~~~---s~~g~~lP~kl~Eama~G~Pvi 392 (414)
+.+.++|.+.. ++ +|.|+. --.-+--..++.+||+-...++ .-||.+ .|| +|.=|.+.+
T Consensus 581 ~aK~iIklI~~va~~iN~Dp~v~~~lkVVFle-nY~VslAe~iipaaDvseqistag~EASGTs-nMK---~alNGaltl 655 (794)
T TIGR02093 581 MAKLIIKLINSVAEVVNNDPAVGDKLKVVFVP-NYNVSLAELIIPAADLSEQISTAGKEASGTG-NMK---FMLNGALTI 655 (794)
T ss_pred HHHHHHHHHHHHHHHhccChhhCCceeEEEeC-CCChHHHHHhhhhhhhhhhCCCCCccccCcc-hhH---HHhcCccee
Confidence 23444444433 22 699986 4466677788999999863222 123443 333 677788888
Q ss_pred Ee----------eeCCcccchhh
Q 015058 393 LL----------WTCSVVGCLFV 405 (414)
Q Consensus 393 ~s----------~~~~~~~~~~~ 405 (414)
++ .++++++-+|-
T Consensus 656 gtlDGanvEi~e~vG~eN~fiFG 678 (794)
T TIGR02093 656 GTLDGANVEIREEVGAENIFIFG 678 (794)
T ss_pred ecccchhHHHHHHhCcccEEEcC
Confidence 77 44555665553
No 196
>PLN02562 UDP-glycosyltransferase
Probab=46.19 E-value=1.2e+02 Score=32.15 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCCCCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCC--cccccCCCeEEEEee
Q 015058 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPH--AAILEHPSIHIHTMT 62 (414)
Q Consensus 1 ~~~~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~--~~~~~~~~i~i~~v~ 62 (414)
|+.++++.++-.--.|.-.-|...|+.|+.+ |+.|++++....... ......++|+++.+|
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp 65 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISATLDPKLGITFMSIS 65 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhccCCCCCEEEEECC
Confidence 5566666666666666777788899999986 999999997653210 111112368888877
No 197
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=45.52 E-value=1.4e+02 Score=31.84 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=33.3
Q ss_pred EEEEEEeC--CCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEee
Q 015058 6 RACVVVLG--DLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (414)
Q Consensus 6 ~~~v~~~~--d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~ 62 (414)
+.+|++.- -.|.-.=|...|+.|+.+ |+.|++++...+..... ...+++++..+|
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~~~-~~~~~i~~~~ip 63 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFSPS-DDFTDFQFVTIP 63 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccccc-cCCCCeEEEeCC
Confidence 34444443 334445566788899886 99999998775421111 112467777776
No 198
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=44.96 E-value=1.1e+02 Score=29.39 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=45.9
Q ss_pred EEEEEcCCCC-hHHHHHHHHHcCCCcE--EEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 318 LFIITGKGPD-KESYEEKIRRLRLKRV--AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 318 ~liI~G~G~~-~e~l~~~i~~l~l~~V--~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
.++++|.-+. ++-+++.+++.|-..| .++||-+..-....+ ..-|+.++... ..+ ..++.||...|+|+|+.
T Consensus 69 ~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~-~~Pdliiv~dp--~~~--~~AI~EA~kl~IP~Iai 143 (204)
T PRK04020 69 KILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGY-IEPDVVVVTDP--RGD--AQAVKEAIEVGIPVVAL 143 (204)
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhcc-CCCCEEEEECC--ccc--HHHHHHHHHhCCCEEEE
Confidence 5667776553 4566667777776533 567766544444333 35677665432 112 56899999999999983
No 199
>PLN02554 UDP-glycosyltransferase family protein
Probab=44.93 E-value=97 Score=33.09 Aligned_cols=43 Identities=9% Similarity=-0.067 Sum_probs=29.8
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
|+.+.+ |+|..++-.. .+...||. |. | -+.++|++++|+|+|+
T Consensus 343 ~g~v~~-W~PQ~~iL~H-~~v~~Fvt-H~---G---~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 343 IGKVIG-WAPQVAVLAK-PAIGGFVT-HC---G---WNSILESLWFGVPMAA 385 (481)
T ss_pred CceEEe-eCCHHHHhCC-cccCcccc-cC---c---cchHHHHHHcCCCEEe
Confidence 666665 9997764322 55666773 21 2 2368999999999998
No 200
>PLN02555 limonoid glucosyltransferase
Probab=44.88 E-value=1.4e+02 Score=32.20 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=31.0
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
|+.+.+ |+|..++-.. .+...||. |. | -+.++||.++|+|+|+-
T Consensus 338 ~g~v~~-W~PQ~~iL~H-~~v~~Fvt-H~---G---~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 338 KGKIVQ-WCPQEKVLAH-PSVACFVT-HC---G---WNSTMEALSSGVPVVCF 381 (480)
T ss_pred ceEEEe-cCCHHHHhCC-CccCeEEe-cC---C---cchHHHHHHcCCCEEeC
Confidence 777776 9998774432 56677773 21 2 23689999999999983
No 201
>PLN02562 UDP-glycosyltransferase
Probab=44.83 E-value=4e+02 Score=28.19 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=29.8
Q ss_pred cEEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
|+...+ |+|..++ |+-+++ ||. |. |. +.++|++++|+|+|+--
T Consensus 329 ~~~v~~-w~PQ~~i---L~h~~v~~fvt-H~---G~---nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 329 QGKVVS-WAPQLEV---LKHQAVGCYLT-HC---GW---NSTMEAIQCQKRLLCYP 373 (448)
T ss_pred CEEEEe-cCCHHHH---hCCCccceEEe-cC---cc---hhHHHHHHcCCCEEeCC
Confidence 777776 9998774 555565 442 32 22 36899999999999843
No 202
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=44.52 E-value=1.3e+02 Score=31.46 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=45.9
Q ss_pred EEEEEEcCCCChHHHHHHHH----------HcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHH
Q 015058 317 LLFIITGKGPDKESYEEKIR----------RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWY 386 (414)
Q Consensus 317 i~liI~G~G~~~e~l~~~i~----------~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama 386 (414)
+++++. .|.-...+.+... +.|-=.|+.+. +++.+++..+|-+||+.++ .||+ ..+=|.-
T Consensus 209 v~lLvp-~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LP-f~~Q~~yD~LLW~cD~NfV-----RGED---SFVRAqW 278 (371)
T TIGR03837 209 VHLLVP-EGRALAAVAAWLGDALLAAGDVHRRGALTVAVLP-FVPQDDYDRLLWACDLNFV-----RGED---SFVRAQW 278 (371)
T ss_pred eEEEec-CCccHHHHHHHhCccccCCccccccCceEEEEcC-CCChhhHHHHHHhChhcEe-----echh---HHHHHHH
Confidence 565554 4565555554331 11111578884 9999999999999999764 3565 5688999
Q ss_pred cCCeEEE
Q 015058 387 SRYSLKL 393 (414)
Q Consensus 387 ~G~Pvi~ 393 (414)
+|+|.|=
T Consensus 279 AgkPfvW 285 (371)
T TIGR03837 279 AGKPFVW 285 (371)
T ss_pred cCCCcee
Confidence 9999874
No 203
>PRK14986 glycogen phosphorylase; Provisional
Probab=44.24 E-value=1.5e+02 Score=34.18 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=71.7
Q ss_pred ccCCCCCeEEEEeccCCCCCChHH-HHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCC-CCh-
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK- 328 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~-LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G-~~~- 328 (414)
.++|+. +.++++-|+++.|.... ++....++.+ |.++.+.......|++.|+. |.-
T Consensus 538 ~ldp~s-Lfd~qakR~heYKRq~LNil~~i~ry~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~ 596 (815)
T PRK14986 538 VVNPKA-LFDVQIKRIHEYKRQLMNVLHVITRYNR--------------------IKADPDAKWVPRVNIFAGKAASAYY 596 (815)
T ss_pred ccCccc-ceeeeehhhhhhhhhhHHHhhhHHHHHH--------------------HHhCCCcCCCCeEEEEeecCCCCcH
Confidence 356766 58999999999999988 7777766654 11111111123899999985 322
Q ss_pred --HHHHHHHHHc----------CCC-cEEEecCCCChhhHHHHHhhccEEEeecc---CCCCCCCchhHHHHHHcCCeEE
Q 015058 329 --ESYEEKIRRL----------RLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHT---SSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 329 --e~l~~~i~~l----------~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~---s~~g~~lP~kl~Eama~G~Pvi 392 (414)
+.+.++|.+. +-. +|.|+. --.-+--..++.+||+-...++ .-||.+ +|| +|.=|.+.+
T Consensus 597 ~aK~iIk~I~~va~~in~Dp~v~~~lkVVFle-nY~vslAe~lipg~Dv~eqis~ag~EASGTs-nMK---~alNGaLtl 671 (815)
T PRK14986 597 MAKHIIHLINDVAKVINNDPQIGDKLKVVFIP-NYSVSLAQLIIPAADLSEQISLAGTEASGTS-NMK---FALNGALTI 671 (815)
T ss_pred HHHHHHHHHHHHHHHhccChhhcCceeEEEeC-CCCHHHHHHhhhhhhhhhhCCCCCccccCcc-hhh---HHhcCceee
Confidence 2222233221 112 699986 4366677788999999873222 123443 333 677787877
Q ss_pred Eeee
Q 015058 393 LLWT 396 (414)
Q Consensus 393 ~s~~ 396 (414)
++-.
T Consensus 672 gtlD 675 (815)
T PRK14986 672 GTLD 675 (815)
T ss_pred eccC
Confidence 6533
No 204
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=43.78 E-value=3e+02 Score=27.16 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee-c-cCCCCC--CCchhHHHHH-----HcCCeEEE
Q 015058 327 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL-H-TSSSGL--DLPMKVCYCW-----YSRYSLKL 393 (414)
Q Consensus 327 ~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~-~-~s~~g~--~lP~kl~Eam-----a~G~Pvi~ 393 (414)
+.+++.+.+++.|+..|-+..+--+.+.+..+.+.|+=||.. + ....|. .++..+-+.. .+.+|+.+
T Consensus 132 e~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 132 ESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 445778899999999888887555788999999999966632 2 111232 4677777777 67889886
No 205
>PLN02207 UDP-glycosyltransferase
Probab=43.24 E-value=1.2e+02 Score=32.50 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=29.7
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
|+...+ |+|..++-.. .+...||+ | .|. +.++|++++|+|+|+-
T Consensus 333 ~g~i~~-W~PQ~~IL~H-~~vg~FvT-H---~Gw---nS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 333 RGMICG-WSPQVEILAH-KAVGGFVS-H---CGW---NSIVESLWFGVPIVTW 376 (468)
T ss_pred CeEEEE-eCCHHHHhcc-cccceeee-c---Ccc---ccHHHHHHcCCCEEec
Confidence 666665 9999886544 33444663 2 122 3589999999999983
No 206
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=43.07 E-value=33 Score=37.56 Aligned_cols=49 Identities=14% Similarity=-0.051 Sum_probs=34.8
Q ss_pred EEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 343 V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
|+=.| .++.+|+..+|+.|-++|-+.-.. + +.+-+||+|.|.|-|-...
T Consensus 324 V~NHG-~l~~~ef~~lL~~akvfiGlGfP~--E--gPaPlEAia~G~vFlNp~~ 372 (559)
T PF15024_consen 324 VKNHG-ILSGDEFQQLLRKAKVFIGLGFPY--E--GPAPLEAIANGCVFLNPRF 372 (559)
T ss_pred hhhcC-cCCHHHHHHHHHhhhEeeecCCCC--C--CCChHHHHHcCCccccccC
Confidence 33345 778999999999999999431111 1 2356999999999876543
No 207
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=41.64 E-value=1e+02 Score=21.90 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=40.2
Q ss_pred EEEEEEcC--CCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 317 LLFIITGK--GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 317 i~liI~G~--G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
..|.+.|. ++.++.++++++++|-+ +.-. ++ ..++..|+.... -+.+...+...|.|+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~-v~~~---~~--------~~~thvI~~~~~-----~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK-VTSS---VS--------KKTTHVIVGSDA-----GPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE-Eecc---cc--------CCceEEEECCCC-----CchHHHHHHHcCCeEecH
Confidence 56788886 78999999999998864 2211 12 356666653211 122367888899999863
No 208
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=41.60 E-value=1.1e+02 Score=31.95 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=39.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 315 p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
+++.|+..=+++....+.+...+.+-.+|.+.+ |+|..++-.--.+-..||+ |. | +. .++|+.++|+|+|+
T Consensus 309 ~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~-W~PQ~~lll~H~~v~~FvT-Hg---G--~n-St~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 309 QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSK-WAPQNDLLLDHPAVGGFVT-HG---G--WN-STLESIYSGVPMVC 379 (496)
T ss_pred CCceEEEEecCCcchhhhhcCCCCCcCceEEec-CCCcHHHhcCCCcCcEEEE-CC---c--cc-HHHHHHhcCCceec
Confidence 466777654443322211111111223799986 9999997611111224442 32 2 22 46999999999995
No 209
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=41.50 E-value=92 Score=28.70 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCC
Q 015058 271 EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL 350 (414)
Q Consensus 271 Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v 350 (414)
=++...|+|++.+.. ..-|.-.++.|||.-. .+.+.+++.|. +|.-.|.
T Consensus 89 ~Dv~laIDame~~~~---------------------------~~iD~~vLvSgD~DF~-~Lv~~lre~G~-~V~v~g~-- 137 (160)
T TIGR00288 89 VDVRMAVEAMELIYN---------------------------PNIDAVALVTRDADFL-PVINKAKENGK-ETIVIGA-- 137 (160)
T ss_pred ccHHHHHHHHHHhcc---------------------------CCCCEEEEEeccHhHH-HHHHHHHHCCC-EEEEEeC--
Confidence 388999999998742 1235667778888764 46667888776 5776761
Q ss_pred ChhhHHHHHhhccEEEeec
Q 015058 351 SAEDYPLLLGSADLGVCLH 369 (414)
Q Consensus 351 ~~ed~~~~l~~aDl~V~~~ 369 (414)
+..--..+-++||-|+-++
T Consensus 138 ~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 138 EPGFSTALQNSADIAIILG 156 (160)
T ss_pred CCCChHHHHHhcCeEEeCC
Confidence 2223446889999999553
No 210
>PLN02534 UDP-glycosyltransferase
Probab=41.39 E-value=4.9e+02 Score=28.10 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=36.4
Q ss_pred CCCCCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCC-Ccccc---cC--CCeEEEEee
Q 015058 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKP-HAAIL---EH--PSIHIHTMT 62 (414)
Q Consensus 1 ~~~~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~-~~~~~---~~--~~i~i~~v~ 62 (414)
|+...++.++-.--.|.-.-|...|+.|+.+ |+.|++++...+.. ..... .. .+|+++.+|
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp 71 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIP 71 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcC
Confidence 4444454444444445555667788899986 99999999765421 11100 01 138888887
No 211
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=40.84 E-value=38 Score=31.97 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=28.8
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHhhCCCcEEEEecCCC
Q 015058 7 ACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS 44 (414)
Q Consensus 7 ~~v~~~~d~~-~~~r~~~~a~~La~~~g~eV~vv~~~~~ 44 (414)
|.|++..|=| .++++...++.|.+. ||+|.|+++...
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~-g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSAL-GHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTT-SSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhc-CCeEEEEeCCCC
Confidence 5677888767 788999999999664 899999998753
No 212
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=40.71 E-value=78 Score=30.86 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=39.6
Q ss_pred CC-cEEEecC-CCChhhHHHHHhhccEEEeeccCCCCCCCchh--HHHHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK--VCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~-~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~k--l~Eama~G~Pvi~s~~~~ 398 (414)
++ +|.|.|. .++.+++...+..||++++.-+|..- .|.. +.+|-..|.|++.-+-..
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V--~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNV--YPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCcc--ccHHHHHHHHHHcCCeEEEECCCC
Confidence 44 7888886 46777888889999999876544321 2332 245677899999876654
No 213
>PLN02764 glycosyltransferase family protein
Probab=40.12 E-value=1.9e+02 Score=30.96 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=30.0
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
.+...+ |+|..++-.. .+++.||. |. | -+.++|++++|+|+|+-
T Consensus 318 G~v~~~-W~PQ~~vL~h-~~v~~Fvt-H~---G---~nS~~Eal~~GVP~l~~ 361 (453)
T PLN02764 318 GVVWGG-WVQQPLILSH-PSVGCFVS-HC---G---FGSMWESLLSDCQIVLV 361 (453)
T ss_pred CcEEeC-CCCHHHHhcC-cccCeEEe-cC---C---chHHHHHHHcCCCEEeC
Confidence 355555 9999886543 44555773 21 2 23689999999999984
No 214
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=40.08 E-value=1.6e+02 Score=31.17 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcCCCcEEEe---------------cCCCChhhHHHHHhhccEEEeeccCCCCCCCchh
Q 015058 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFR---------------TMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 380 (414)
Q Consensus 316 ~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~---------------g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~k 380 (414)
+-+++++|-|.--+-.-....+.|+++|++. +..++-++++.+|+.+|+.++. |++...-++..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss-Tsa~~~ii~~~ 256 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS-TSAPHPIITRE 256 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe-cCCCccccCHH
Confidence 4579999999766555555555666666665 2245678999999999999864 22222223333
Q ss_pred -HHHHHHcCCe
Q 015058 381 -VCYCWYSRYS 390 (414)
Q Consensus 381 -l~Eama~G~P 390 (414)
+-+++.....
T Consensus 257 ~ve~a~~~r~~ 267 (414)
T COG0373 257 MVERALKIRKR 267 (414)
T ss_pred HHHHHHhcccC
Confidence 3344555544
No 215
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.82 E-value=64 Score=33.13 Aligned_cols=71 Identities=14% Similarity=-0.045 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchh-HHH--HHHcCCeEEEeeeCCcccchhh
Q 015058 330 SYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK-VCY--CWYSRYSLKLLWTCSVVGCLFV 405 (414)
Q Consensus 330 ~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~k-l~E--ama~G~Pvi~s~~~~~~~~~~~ 405 (414)
...+.+++++-. +|.-....+..++...++..+|+.|....+ +..+ ++. |...++|.|...+.|..|-+.+
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~-----~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 86 SAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDN-----FDTRHLASWAAARLGIPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCC-----HHHHHHHHHHHHHcCCCEEEEEEecCeEEEEE
Confidence 344455555554 555444466777888899999998853221 2222 222 5778999999988888886554
No 216
>PLN02210 UDP-glucosyl transferase
Probab=38.41 E-value=2.4e+02 Score=29.96 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCEEEEEEeCCCCCChHHHHHHHH--HHhhCCCcEEEEecCCC
Q 015058 3 RRGRACVVVLGDLGRSPRMQYQALS--LARQMSLEVDVVAYGGS 44 (414)
Q Consensus 3 ~~~~~~v~~~~d~~~~~r~~~~a~~--La~~~g~eV~vv~~~~~ 44 (414)
++.++.++-.--.|.-.-+...|+. |+.+ |+.|++++....
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~ 49 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQA 49 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccch
Confidence 3335444444444555566788888 5576 999999997753
No 217
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.34 E-value=99 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCC
Q 015058 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGS 44 (414)
Q Consensus 7 ~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~ 44 (414)
|.|+++|..+ --...+..|.++ ||+|.+.+.+..
T Consensus 1 m~ILvlGGT~---egr~la~~L~~~-g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTV---DSRAIAKGLIAQ-GIEILVTVTTSE 34 (256)
T ss_pred CeEEEEechH---HHHHHHHHHHhC-CCeEEEEEccCC
Confidence 3566766432 234457788886 999998776654
No 218
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=37.79 E-value=86 Score=30.37 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccch
Q 015058 327 DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCL 403 (414)
Q Consensus 327 ~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~ 403 (414)
.-+...+.+++++-. +|......+..+++..++..+|+.|....+.. .-..+-+ |...++|+|...+.|..|.+
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~---~r~~ln~~~~~~~ip~v~~~~~g~~G~v 154 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVE---VRNQLNRQCFAAKVPLVSGAAIRMEGQV 154 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHH---HHHHHHHHHHHcCCCEEEEEecccEeEE
Confidence 335567778887766 77776657778889999999999985432211 1112222 57899999987777666653
No 219
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=36.97 E-value=80 Score=29.85 Aligned_cols=57 Identities=23% Similarity=0.064 Sum_probs=38.1
Q ss_pred CC-cEEEecCCCChh---hHHHHHhhccEEEeeccCCCCCCCchh--HHHHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK--VCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~e---d~~~~l~~aDl~V~~~~s~~g~~lP~k--l~Eama~G~Pvi~s~~~~ 398 (414)
++ +|.|.|..+|.+ +..+.++.||++++.-+|..- .|.+ +-++...|.|++.-+..-
T Consensus 130 lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V--~pa~~l~~~~~~~g~~vi~iN~~~ 192 (206)
T cd01410 130 LKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQV--TPAANLPLKAARAGGRLVIVNLQP 192 (206)
T ss_pred cCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCcee--hhHHHHHHHHHhcCCeEEEECCCC
Confidence 45 899999777754 666777889999876444321 2333 234667899999866543
No 220
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.68 E-value=1.7e+02 Score=32.95 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCC-CCCCCchhHHHHHHcCCeEEE
Q 015058 329 ESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 329 e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-~g~~lP~kl~Eama~G~Pvi~ 393 (414)
++++..+.++|++ +|.|.. ....+|=-.-.+-||+.+ .+.. -|.+ .-+|.+++|+|+|+
T Consensus 802 ~rf~ty~~~~Gl~p~riifs~-va~k~eHvrr~~LaDv~L--DTplcnGhT---Tg~dvLw~GvPmVT 863 (966)
T KOG4626|consen 802 QRFRTYAEQLGLEPDRIIFSP-VAAKEEHVRRGQLADVCL--DTPLCNGHT---TGMDVLWAGVPMVT 863 (966)
T ss_pred HHHHHHHHHhCCCccceeecc-ccchHHHHHhhhhhhhcc--cCcCcCCcc---cchhhhccCCceee
Confidence 7888999999997 899985 777788888889999987 1111 1211 23788999999996
No 221
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=36.53 E-value=73 Score=32.56 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=51.5
Q ss_pred cCCC-ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCc
Q 015058 323 GKGP-DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSV 399 (414)
Q Consensus 323 G~G~-~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~ 399 (414)
|+|. .-+...+.+++++-. +|......+..+++..+++.+|+.|....+. ..-..+-+ |...|+|.|...+.|.
T Consensus 76 g~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 76 KNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---ETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred cCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---HHHHHHHHHHHHhCCCEEEEeeeee
Confidence 4453 334556677777655 5666554667788889999999998542211 11112333 4678999999887777
Q ss_pred ccchhh
Q 015058 400 VGCLFV 405 (414)
Q Consensus 400 ~~~~~~ 405 (414)
.|..++
T Consensus 153 ~G~~~~ 158 (339)
T PRK07688 153 YGLSYT 158 (339)
T ss_pred eeEEEE
Confidence 776543
No 222
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=35.96 E-value=1.6e+02 Score=29.20 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.6
Q ss_pred EEEEEeCCCC-CChHHHHHHHHHHhhCCCcEEEEecCC
Q 015058 7 ACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGG 43 (414)
Q Consensus 7 ~~v~~~~d~~-~~~r~~~~a~~La~~~g~eV~vv~~~~ 43 (414)
|.|++..|=| .+++++-.+..|. . +.+|+|+++..
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~-~~dV~VVAP~~ 36 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-E-GADVTVVAPDR 36 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-h-CCCEEEEccCC
Confidence 5678888878 7999998888887 4 89999999875
No 223
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.54 E-value=1.7e+02 Score=28.96 Aligned_cols=88 Identities=24% Similarity=0.286 Sum_probs=52.8
Q ss_pred EEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEeecCCCCCCCCCCchHHHHH-HHHH
Q 015058 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL-LLKP 84 (414)
Q Consensus 6 ~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~-l~k~ 84 (414)
++-++-+|++|.+.-+.....+.|.+.+.+|.+++.+.--. ++ ..-. ..+.
T Consensus 4 KiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~-pe---------------------------~~~~~~~~~ 55 (277)
T PRK00994 4 KIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMG-PE---------------------------EVEEVVKKM 55 (277)
T ss_pred EEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCC-HH---------------------------HHHHHHHHH
Confidence 35567788888887777777777776677777777553110 00 0000 0111
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCC-CCchHHHHHHHHHhhcCCeEEEE
Q 015058 85 LIQFFMLLWFLCVKIASPDVFLVQNP-PSVPTLVAVKWASSLRRSAFIVD 133 (414)
Q Consensus 85 l~~~~~l~~~l~~k~~~~Dvvh~~~p-p~~~~~~~~~la~~~~~~~~Iv~ 133 (414)
+ +..+||++++-+| |..|....++-..+-.++|+|+.
T Consensus 56 ~------------~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI 93 (277)
T PRK00994 56 L------------EEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVI 93 (277)
T ss_pred H------------HhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEE
Confidence 1 2368998877776 55555555665555568898874
No 224
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=35.35 E-value=99 Score=28.93 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchh
Q 015058 327 DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLF 404 (414)
Q Consensus 327 ~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~ 404 (414)
.-+.+.+.+++++-. +|......+. ++.+.+++.+|+.|+...+. ..-.++-+ |...|+|.+.+.+.|..|..+
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~---~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSR---AELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 345667778888776 7776653444 55678899999988532111 11112223 356899999999999999877
Q ss_pred hh
Q 015058 405 VL 406 (414)
Q Consensus 405 ~~ 406 (414)
.-
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 225
>PLN02173 UDP-glucosyl transferase family protein
Probab=34.68 E-value=2e+02 Score=30.65 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=30.9
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEee-ccCCCCCCCchhHHHHHHcCCeEEEee
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCL-HTSSSGLDLPMKVCYCWYSRYSLKLLW 395 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~-~~s~~g~~lP~kl~Eama~G~Pvi~s~ 395 (414)
++.+.+ |+|..+ +|+-.+++.+. | .| -+.++|++++|+|+|+--
T Consensus 318 ~~~i~~-W~PQ~~---iL~H~~v~~FvtH---cG---wnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 318 KSLVLK-WSPQLQ---VLSNKAIGCFMTH---CG---WNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred ceEEeC-CCCHHH---HhCCCccceEEec---Cc---cchHHHHHHcCCCEEecC
Confidence 678776 999766 66667654422 2 12 246899999999999843
No 226
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=34.61 E-value=66 Score=26.89 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=36.2
Q ss_pred EEEEcCCC-----ChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEee
Q 015058 319 FIITGKGP-----DKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 319 liI~G~G~-----~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
+..+|.|- -+..+|+..+++|+. .+.-. ..+++..+...||++|+.
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~----~v~~~~~~~~~aDiiv~s 56 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC----AVDEIKALTDGADIIVTS 56 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE----EecccccCCCcccEEEEe
Confidence 45688874 367899999999997 55554 477888999999999953
No 227
>PLN00414 glycosyltransferase family protein
Probab=34.45 E-value=3e+02 Score=29.19 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred cccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEc-------
Q 015058 251 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG------- 323 (414)
Q Consensus 251 ~~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G------- 323 (414)
++-.+.+..+.++-|++..- .-+.+.|.+.-+.. ..-.+.-++.-
T Consensus 246 LD~q~~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~---------------------------s~~~Flwvvr~~~~~~~~ 297 (446)
T PLN00414 246 LNGFEPGSVVFCAFGTQFFF-EKDQFQEFCLGMEL---------------------------TGLPFLIAVMPPKGSSTV 297 (446)
T ss_pred HhcCCCCceEEEeecccccC-CHHHHHHHHHHHHH---------------------------cCCCeEEEEecCCCcccc
Q ss_pred CCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 324 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 324 ~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
.+..-+.+++.++..| ....+ |+|..++-.. .+.+.|| +-.|-+ .++|++++|+|+|+
T Consensus 298 ~~~lp~~f~~r~~~~g---~vv~~-w~PQ~~vL~h-~~v~~fv----tH~G~n---S~~Ea~~~GvP~l~ 355 (446)
T PLN00414 298 QEALPEGFEERVKGRG---IVWEG-WVEQPLILSH-PSVGCFV----NHCGFG---SMWESLVSDCQIVF 355 (446)
T ss_pred hhhCChhHHHHhcCCC---eEEec-cCCHHHHhcC-CccceEE----ecCchh---HHHHHHHcCCCEEe
No 228
>PRK08223 hypothetical protein; Validated
Probab=33.65 E-value=87 Score=31.50 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCch--hHH-HHHHcCCeEEEeeeCCccc
Q 015058 326 PDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPM--KVC-YCWYSRYSLKLLWTCSVVG 401 (414)
Q Consensus 326 ~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~--kl~-Eama~G~Pvi~s~~~~~~~ 401 (414)
+.-+...+.+++++-. +|.-....+..++..+++..+|+.|-.... ..+.. .+- -|...|+|+|...+.|..|
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~---~~~~~r~~ln~~c~~~~iP~V~~~~~g~~g 157 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDF---FEFDARRLVFAACQQRGIPALTAAPLGMGT 157 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCC---CcHHHHHHHHHHHHHcCCCEEEEeccCCeE
Confidence 3345667788888877 777665588889999999999998832111 01111 122 2577899999998888877
Q ss_pred chhhh
Q 015058 402 CLFVL 406 (414)
Q Consensus 402 ~~~~~ 406 (414)
-+.+.
T Consensus 158 qv~v~ 162 (287)
T PRK08223 158 ALLVF 162 (287)
T ss_pred EEEEE
Confidence 65443
No 229
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=33.19 E-value=1e+02 Score=30.26 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=36.6
Q ss_pred cEEEecCCCChhh---HHHHHhhccEEEeeccCCCCCCCch-h-HHHHHHcCCeEEEeeeCC
Q 015058 342 RVAFRTMWLSAED---YPLLLGSADLGVCLHTSSSGLDLPM-K-VCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 342 ~V~f~g~~v~~ed---~~~~l~~aDl~V~~~~s~~g~~lP~-k-l~Eama~G~Pvi~s~~~~ 398 (414)
+|.|.|..+|.++ ..+.+..||++++.-+|.. . -|. - +-++...|.|++.-|...
T Consensus 182 ~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~-V-~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 182 DVVFFGENVPRDRVVTAAARLAEADALLVLGSSLM-V-YSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCce-e-cchhhHHHHHHHCCCcEEEEcCCC
Confidence 7888887777544 5566778999987644332 1 232 2 235777999999877654
No 230
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=2.5e+02 Score=25.72 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=38.9
Q ss_pred EEEE-EcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 318 LFII-TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 318 ~liI-~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
++++ +|+|..+. ....+..| +-..+.+..+...|.+.|+ | .|+| .++.++..++|.|.
T Consensus 32 ~lIvQyGn~d~kp----------vagl~v~~-F~~~~kiQsli~darIVIS-H---aG~G---SIL~~~rl~kplIv 90 (161)
T COG5017 32 ELIVQYGNGDIKP----------VAGLRVYG-FDKEEKIQSLIHDARIVIS-H---AGEG---SILLLLRLDKPLIV 90 (161)
T ss_pred heeeeecCCCccc----------ccccEEEe-echHHHHHHHhhcceEEEe-c---cCcc---hHHHHhhcCCcEEE
Confidence 4444 89987755 11234444 5578899999999997774 2 3444 57778888888776
No 231
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.78 E-value=1.7e+02 Score=27.51 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=40.2
Q ss_pred CcEEEEEEcCCCChH--HHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 315 PRLLFIITGKGPDKE--SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 315 p~i~liI~G~G~~~e--~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
.|+.++|-+.|..++ +.-+.+++.|.+-|.+.| . +...+..+++.+|+.+..
T Consensus 110 gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~-~-~~s~l~~l~~~~D~~i~i 163 (196)
T PRK10886 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTG-Y-DGGELAGLLGPQDVEIRI 163 (196)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC-C-CCChhhhccccCCEEEEc
Confidence 479999999998765 445678888887666665 3 677899888899998853
No 232
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=32.42 E-value=5.3e+02 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=26.2
Q ss_pred HHhccCCEEE--EeCHHHHHHHHHhhCCcEEEecCCCCCCcCCCC
Q 015058 162 YYGKMANGCL--CVTQAMQHELAQNWGIKATVLYDQPPEFFHPTS 204 (414)
Q Consensus 162 ~~~k~ad~ii--~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~ 204 (414)
.+.+++|.|+ +-.+...+.+++.-+++ || |......||+.
T Consensus 89 vls~y~D~iviR~~~~~~~~~~a~~~~vP--VI-Na~~~~~HPtQ 130 (302)
T PRK14805 89 NLSCWADAIVARVFSHSTIEQLAEHGSVP--VI-NALCDLYHPCQ 130 (302)
T ss_pred HHHHhCCEEEEeCCChhHHHHHHHhCCCC--EE-ECCCCCCChHH
Confidence 3446689888 56677788887764443 34 55334699974
No 233
>PLN02342 ornithine carbamoyltransferase
Probab=31.87 E-value=5.9e+02 Score=26.29 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHhccCCEEE--EeCHHHHHHHHHhhCCcEEEecCCCCCCcCCCC
Q 015058 162 YYGKMANGCL--CVTQAMQHELAQNWGIKATVLYDQPPEFFHPTS 204 (414)
Q Consensus 162 ~~~k~ad~ii--~vS~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~ 204 (414)
.+.+++|.|+ ..++...+.+++.-+++ || |+....+||+.
T Consensus 136 vLs~y~D~IviR~~~~~~~~~la~~~~vP--VI-NA~~~~~HPtQ 177 (348)
T PLN02342 136 VLSRYNDIIMARVFAHQDVLDLAEYSSVP--VI-NGLTDYNHPCQ 177 (348)
T ss_pred HHHHhCCEEEEeCCChHHHHHHHHhCCCC--EE-ECCCCCCChHH
Confidence 3445689888 45677777787764444 33 55345689974
No 234
>PRK10494 hypothetical protein; Provisional
Probab=31.69 E-value=2.1e+02 Score=28.08 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=58.0
Q ss_pred HHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcC-CC-----ChHHHHHHHHHcCCC--cEEE
Q 015058 274 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GP-----DKESYEEKIRRLRLK--RVAF 345 (414)
Q Consensus 274 ~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~-G~-----~~e~l~~~i~~l~l~--~V~f 345 (414)
+.+.+|++.+++ ++..++++.|. |. +-+..++.+.++|+. ++..
T Consensus 107 ~Rl~~a~~L~r~----------------------------~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~ 158 (259)
T PRK10494 107 PRLTEGIRLWRA----------------------------NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIIT 158 (259)
T ss_pred HHHHHHHHHHHh----------------------------CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeee
Confidence 578888888774 56778899884 21 224556777889998 4655
Q ss_pred ecCCCChhhHHHHHhhccEE----EeeccCCCCCCCchhHHHHHHcCCeEEEeeeC
Q 015058 346 RTMWLSAEDYPLLLGSADLG----VCLHTSSSGLDLPMKVCYCWYSRYSLKLLWTC 397 (414)
Q Consensus 346 ~g~~v~~ed~~~~l~~aDl~----V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~~ 397 (414)
-+ -+++-..+....+++. +.+.||. .-+|.+...+-..|+.++..-++
T Consensus 159 e~--~s~nT~eNa~~~~~~~~~~~iiLVTsa--~Hm~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 159 LD--LPKDTEEEAAAVKQAIGDAPFLLVTSA--SHLPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CC--CCCCHHHHHHHHHHHhCCCCEEEECCH--HHHHHHHHHHHHcCCceeecCCc
Confidence 32 2555444444444332 2222332 23788888888999999975544
No 235
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=31.54 E-value=5.8e+02 Score=26.07 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=25.3
Q ss_pred HHHhccCCEEEEe--CHHHHHHHHHhhCCcEEEecCCCCCCcCCCC
Q 015058 161 KYYGKMANGCLCV--TQAMQHELAQNWGIKATVLYDQPPEFFHPTS 204 (414)
Q Consensus 161 k~~~k~ad~ii~v--S~~~~~~l~~~~gi~i~vI~n~~~~~f~p~~ 204 (414)
+.+.+++|.|++= ++...+.+++.-+++ || |+.....||+.
T Consensus 95 rvls~y~D~iviR~~~~~~~~~~a~~s~vP--VI-Na~~~~~HPtQ 137 (332)
T PRK04284 95 RVLGGMYDGIEYRGFSQRTVETLAEYSGVP--VW-NGLTDEDHPTQ 137 (332)
T ss_pred HHHHHhCCEEEEecCchHHHHHHHHhCCCC--EE-ECCCCCCChHH
Confidence 3445678988764 445666676654444 34 66446799984
No 236
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=31.22 E-value=5.1e+02 Score=25.31 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=46.4
Q ss_pred EEEcCCC--ChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEE--eeccCCCCC--CCchhHHHHHH-----cC
Q 015058 320 IITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGV--CLHTSSSGL--DLPMKVCYCWY-----SR 388 (414)
Q Consensus 320 iI~G~G~--~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V--~~~~s~~g~--~lP~kl~Eama-----~G 388 (414)
+|+=+-| +.+++.+.++++|+..+.+..+--+.+++..+.+.+|=|| +......|. .++.-+.|.+. .+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC
Confidence 3443444 3357778889999997877775556789999999999444 222112232 25555555544 57
Q ss_pred CeEEE
Q 015058 389 YSLKL 393 (414)
Q Consensus 389 ~Pvi~ 393 (414)
.||++
T Consensus 199 ~pi~v 203 (256)
T TIGR00262 199 KPVLV 203 (256)
T ss_pred CCEEE
Confidence 78765
No 237
>PLN02670 transferase, transferring glycosyl groups
Probab=30.99 E-value=3.4e+02 Score=29.12 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=28.8
Q ss_pred EEEecCCCChhhHHHHHhhccE--EEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 343 VAFRTMWLSAEDYPLLLGSADL--GVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 343 V~f~g~~v~~ed~~~~l~~aDl--~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
+.+.+ |+|..+ +|+-..+ ||+ |- | -+.++|++++|+|+|+-
T Consensus 341 ~vv~~-W~PQ~~---IL~H~~v~~Fvt-Hc---G---wnS~~Eai~~GVP~l~~ 383 (472)
T PLN02670 341 MIHVG-WVPQVK---ILSHESVGGFLT-HC---G---WNSVVEGLGFGRVLILF 383 (472)
T ss_pred eEEeC-cCCHHH---HhcCcccceeee-cC---C---cchHHHHHHcCCCEEeC
Confidence 56666 999887 4555555 553 21 2 23689999999999983
No 238
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.91 E-value=1.3e+02 Score=25.30 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=34.6
Q ss_pred EEEEcCCCC----hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEe
Q 015058 319 FIITGKGPD----KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVC 367 (414)
Q Consensus 319 liI~G~G~~----~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~ 367 (414)
++++|.|-. -+.+++.+++.|+. .|.-. +..+++.....+|+.+.
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill 53 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVIL 53 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEE
Confidence 466788854 46788888999997 55443 68899999999998774
No 239
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=30.54 E-value=1.7e+02 Score=28.93 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=39.2
Q ss_pred CEEEEEEeCCCC-CChHHHHHHHHHHhhCCCcEEEEecCCCC--CCcccccCCCeEEEEee
Q 015058 5 GRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGSK--PHAAILEHPSIHIHTMT 62 (414)
Q Consensus 5 ~~~~v~~~~d~~-~~~r~~~~a~~La~~~g~eV~vv~~~~~~--~~~~~~~~~~i~i~~v~ 62 (414)
++|.|++..|=| .++++...++.|.+. | +|.|+++.... ....+..+..+++..+.
T Consensus 4 ~~M~ILltNDDGi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~ 62 (257)
T PRK13932 4 KKPHILVCNDDGIEGEGIHVLAASMKKI-G-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQ 62 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHhC-C-CEEEEcCCCCCCCCcccccCCCCeEEEEEc
Confidence 468899999888 789999999999874 7 89999987432 22223334455665554
No 240
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.29 E-value=2.2e+02 Score=27.02 Aligned_cols=71 Identities=3% Similarity=-0.136 Sum_probs=44.3
Q ss_pred EEEEEcCCCC-hHHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 318 LFIITGKGPD-KESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 318 ~liI~G~G~~-~e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
.++++|.-+. ++-+++.+++.|-. +=+|+||-+..-.. .-+..-|+.++... ..+ ..++-||...|+|+|+
T Consensus 63 ~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp--~~~--~~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 63 DILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDP--RAD--HQALKEASEVGIPIVA 136 (196)
T ss_pred eEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECC--ccc--cHHHHHHHHcCCCEEE
Confidence 5777876553 44566666666654 33577765433322 23566777665422 112 5689999999999998
No 241
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.28 E-value=61 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=29.4
Q ss_pred HHHHhh-ccEEEee---ccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 356 PLLLGS-ADLGVCL---HTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 356 ~~~l~~-aDl~V~~---~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
..-+.. +|+.|+- .....|-||-..+.+|++.|+||+++.-
T Consensus 87 ~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 87 RRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEEC
Confidence 334444 8998852 2233477788999999999999998643
No 242
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=29.58 E-value=2.3e+02 Score=27.60 Aligned_cols=80 Identities=18% Similarity=0.057 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCh---HHHHHHHHHcCCCcEEEecCC----CChhhHHHHHhhccEEEeeccC-------CCCCCCchh
Q 015058 315 PRLLFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTS-------SSGLDLPMK 380 (414)
Q Consensus 315 p~i~liI~G~G~~~---e~l~~~i~~l~l~~V~f~g~~----v~~ed~~~~l~~aDl~V~~~~s-------~~g~~lP~k 380 (414)
|++.|+=...++.. +.+.+..+++|.+.|..+.-. -+.++....+..||...+.-.. ..+.++-..
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~ 108 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDR 108 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHH
Confidence 44544444445433 466777788899766655311 1234567889999986642111 112334456
Q ss_pred HHHHHHcCCeEEEe
Q 015058 381 VCYCWYSRYSLKLL 394 (414)
Q Consensus 381 l~Eama~G~Pvi~s 394 (414)
+-+++..|.|++.+
T Consensus 109 l~~~~~~G~vi~G~ 122 (250)
T TIGR02069 109 LRKRVHEGIILGGT 122 (250)
T ss_pred HHHHHHcCCeEEEc
Confidence 77888899888763
No 243
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=29.52 E-value=3.2e+02 Score=29.12 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=34.6
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCC---cccccCCCeEEEEee
Q 015058 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPH---AAILEHPSIHIHTMT 62 (414)
Q Consensus 4 ~~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~---~~~~~~~~i~i~~v~ 62 (414)
++++.++-.--.|.-.=|...|+.|+...|+.|++++...+... ......++++++.++
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~ 64 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS 64 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC
Confidence 34555544444455556677888888523999999987642111 101112368888876
No 244
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.24 E-value=1.2e+02 Score=23.81 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=33.2
Q ss_pred EEEEcCCCC-----hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEee
Q 015058 319 FIITGKGPD-----KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 319 liI~G~G~~-----~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~ 368 (414)
++++|.|-. ++.+++.++++|++-....+ +..+...+.+.+|++++.
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~---~~~~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAG---SILEVEEIADDADLILLT 54 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEE---ETTTHHHHHTT-SEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEe---cccccccccCCCcEEEEc
Confidence 567888852 47889999999998333334 356777788889999853
No 245
>PRK14852 hypothetical protein; Provisional
Probab=29.18 E-value=1.1e+02 Score=36.04 Aligned_cols=77 Identities=14% Similarity=0.007 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHH-HHHHcCCeEEEeeeCCcccchhhh
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVC-YCWYSRYSLKLLWTCSVVGCLFVL 406 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~-Eama~G~Pvi~s~~~~~~~~~~~~ 406 (414)
+...+.+++++-. +|......+..+.+..++..+|+.|......+ ...-..+. .|...|+|+|.+.+.|..|.+.+.
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~-~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~ 467 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFA-LDIRRRLFNRALELGIPVITAGPLGYSCALLVF 467 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCcc-HHHHHHHHHHHHHcCCCEEEeeccccCeeEEEE
Confidence 5667788888877 77777557889999999999999983211100 00001222 457899999999999988877653
No 246
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=28.98 E-value=3.4e+02 Score=26.65 Aligned_cols=84 Identities=4% Similarity=-0.041 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCC-----CChHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEE----EeeccCCCCCCCchhHHH
Q 015058 314 YPRLLFIITGKG-----PDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLG----VCLHTSSSGLDLPMKVCY 383 (414)
Q Consensus 314 ~p~i~liI~G~G-----~~~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~----V~~~~s~~g~~lP~kl~E 383 (414)
.+.-++++.|+. ++-+.+++...++|+. .-++.- .-+.+-+.....+.+++ +...++ ..-+|.++.-
T Consensus 80 gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e-~~s~nT~en~~~a~~i~~~~~~iIVTq--~fHm~RA~~i 156 (239)
T PRK10834 80 GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLD-YAGFRTLDSIVRTRKVFDTNDFIIITQ--RFHCERALFI 156 (239)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEec-CCCCCHHHHHHHHHHHhCCCCEEEECC--HHHHHHHHHH
Confidence 344578888863 2334667778888998 445543 56777888888777764 111222 2347999999
Q ss_pred HHHcCCeEEEeeeCCcc
Q 015058 384 CWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 384 ama~G~Pvi~s~~~~~~ 400 (414)
+-..|+.+++....+..
T Consensus 157 a~~~Gi~~~~~~a~~~~ 173 (239)
T PRK10834 157 ALHMGIQAQCYAVPSPK 173 (239)
T ss_pred HHHcCCceEEEeCCCCc
Confidence 99999998876554433
No 247
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=28.57 E-value=1.5e+02 Score=29.41 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=37.5
Q ss_pred CC-cEEEecCCCChhhH---HHHHhhccEEEeeccCCCCCCCchhHH--HHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAEDY---PLLLGSADLGVCLHTSSSGLDLPMKVC--YCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~ed~---~~~l~~aDl~V~~~~s~~g~~lP~kl~--Eama~G~Pvi~s~~~~ 398 (414)
++ +|.|.|..+|.+.+ .+.+..||++++.-+|.. -.|..-+ .|...|.|++.-+..-
T Consensus 174 lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~--V~pa~~l~~~a~~~g~~vi~IN~~~ 236 (271)
T PTZ00409 174 FKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSS--VSTATNLCYRAHRKKKKIVEVNISK 236 (271)
T ss_pred ccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCc--ccCHHHHHHHHHHcCCCEEEECCCC
Confidence 44 78888988886544 457789999987644322 2233322 3667899999766554
No 248
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.27 E-value=3.9e+02 Score=25.09 Aligned_cols=75 Identities=11% Similarity=-0.037 Sum_probs=42.5
Q ss_pred EEEEEEcCCC--ChH---HHHHHHHHc-CCCcEEEecCCCChhhHHHHHhhccEEEeeccCC-------CCCCCchhHHH
Q 015058 317 LLFIITGKGP--DKE---SYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVCY 383 (414)
Q Consensus 317 i~liI~G~G~--~~e---~l~~~i~~l-~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-------~g~~lP~kl~E 383 (414)
.++.++...+ ..+ ++.+..+++ |.+.+.+. -.+.++.+..+..||+.+++-.+. ...++-..+-+
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~--~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLH--LFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEe--ccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 4556655433 223 344455566 66522222 224678789999999988652111 01234445666
Q ss_pred HHHcCCeEEE
Q 015058 384 CWYSRYSLKL 393 (414)
Q Consensus 384 ama~G~Pvi~ 393 (414)
+...|.|++.
T Consensus 110 ~~~~g~~i~G 119 (212)
T cd03146 110 ALERGVVYIG 119 (212)
T ss_pred HHHCCCEEEE
Confidence 6778999876
No 249
>PLN00164 glucosyltransferase; Provisional
Probab=28.11 E-value=3.3e+02 Score=29.10 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=28.5
Q ss_pred cEEEecCCCChhhHHHHHhhccEEEee-ccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 342 RVAFRTMWLSAEDYPLLLGSADLGVCL-HTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aDl~V~~-~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
.+...+ |+|..+ +|+.++++.+. |. | -+.++|++++|+|+|+
T Consensus 340 g~~v~~-w~PQ~~---iL~h~~vg~fvtH~---G---wnS~~Eai~~GVP~l~ 382 (480)
T PLN00164 340 GLVWPT-WAPQKE---ILAHAAVGGFVTHC---G---WNSVLESLWHGVPMAP 382 (480)
T ss_pred CeEEee-cCCHHH---HhcCcccCeEEeec---c---cchHHHHHHcCCCEEe
Confidence 355655 988776 56667753322 32 2 2368999999999998
No 250
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=27.57 E-value=2e+02 Score=27.72 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.5
Q ss_pred ChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcC-CeEEEee
Q 015058 351 SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSR-YSLKLLW 395 (414)
Q Consensus 351 ~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G-~Pvi~s~ 395 (414)
...++.+.|+.|..++++...+. ...-++|||++| +|||.++
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~---~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGP---WSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCc---ccchHHHHhhhceeeEEecC
Confidence 45579999999999988643221 345689999988 5999865
No 251
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=27.46 E-value=3.3e+02 Score=27.37 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCChH----HHHHHHHHcCC------CcEEEecCC--C---------------------ChhhHHHHHh
Q 015058 314 YPRLLFIITGKGPDKE----SYEEKIRRLRL------KRVAFRTMW--L---------------------SAEDYPLLLG 360 (414)
Q Consensus 314 ~p~i~liI~G~G~~~e----~l~~~i~~l~l------~~V~f~g~~--v---------------------~~ed~~~~l~ 360 (414)
..+.+++|.|-|.--- .+.+...+.|+ +++.+..-. + ...++.+.+.
T Consensus 23 l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~ 102 (279)
T cd05312 23 LSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVK 102 (279)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHH
Confidence 4568999999887543 33333333477 467665310 0 0123445555
Q ss_pred --hccEEEeeccCCCCCCCchhHHHHHH--cCCeEEE
Q 015058 361 --SADLGVCLHTSSSGLDLPMKVCYCWY--SRYSLKL 393 (414)
Q Consensus 361 --~aDl~V~~~~s~~g~~lP~kl~Eama--~G~Pvi~ 393 (414)
.+|+++-.++. .| -|...+++.|+ +..|||-
T Consensus 103 ~v~ptvlIG~S~~-~g-~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 103 AVKPTVLIGLSGV-GG-AFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred hcCCCEEEEeCCC-CC-CCCHHHHHHHHhcCCCCEEE
Confidence 67888854321 23 37888999999 6889885
No 252
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.06 E-value=1.7e+02 Score=25.28 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=49.2
Q ss_pred hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchhh
Q 015058 328 KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLFV 405 (414)
Q Consensus 328 ~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~~ 405 (414)
-+.+.+.+++++-. +|......+..+....++..+|+.|....+.. .-..+-+ |...|+|.+...+.|..|-.++
T Consensus 55 a~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~---~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~ 131 (143)
T cd01483 55 AEVAARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIA---VRRALNRACKELGIPVIDAGGLGLGGDIQV 131 (143)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHH---HHHHHHHHHHHcCCCEEEEcCCCcEEEEEE
Confidence 35667777777754 55555445566666888999999985432211 1112333 3667999999999998886654
No 253
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=26.75 E-value=1.4e+02 Score=31.12 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchh-HHH--HHHcCCeEEEeeeCCcccchh
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK-VCY--CWYSRYSLKLLWTCSVVGCLF 404 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~k-l~E--ama~G~Pvi~s~~~~~~~~~~ 404 (414)
+...+.+++++-. +|.-....+..++...++..+|+.|....+ +..+ ++. |...|+|.|...+.|..|-++
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~-----~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~ 173 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDN-----FATRYLVNDAAVLAGKPYVWGSIYRFEGQAS 173 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCC-----HHHHHHHHHHHHHcCCCEEEEEeccCEEEEE
Confidence 4556677777765 665555577888889999999999843221 1222 232 467899999999999888766
Q ss_pred hh
Q 015058 405 VL 406 (414)
Q Consensus 405 ~~ 406 (414)
+.
T Consensus 174 ~~ 175 (392)
T PRK07878 174 VF 175 (392)
T ss_pred EE
Confidence 43
No 254
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=26.65 E-value=4.8e+02 Score=27.43 Aligned_cols=78 Identities=19% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCC----------------hhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcC
Q 015058 325 GPDKESYEEKIRRLRLKRVAFRTMWLS----------------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSR 388 (414)
Q Consensus 325 G~~~e~l~~~i~~l~l~~V~f~g~~v~----------------~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G 388 (414)
|..-+.+.+++++.+.+.|.... --. .+-+.++...+|.-++........||+. .++|+-.|
T Consensus 36 g~n~~~l~~q~~~f~P~~v~~~d-~~~~~~l~~~~~~~~v~~G~~~l~e~a~~~~~d~Vm~AivG~aGL~p-TlaAi~aG 113 (385)
T COG0743 36 GKNVELLAEQIREFKPKYVVIAD-ESAAKELEDLLPGTEVLVGEEGLCELAAEDDADVVMNAIVGAAGLLP-TLAAIKAG 113 (385)
T ss_pred CCcHHHHHHHHHHhCCceEEecC-hHHHHHHHhhccCceEEecHHHHHHHHhcCCCCEEeehhhhhcccHH-HHHHHHcC
Confidence 44778888888888877654321 112 4444455555533222222222234543 68999999
Q ss_pred CeEEEeeeCCcccchh
Q 015058 389 YSLKLLWTCSVVGCLF 404 (414)
Q Consensus 389 ~Pvi~s~~~~~~~~~~ 404 (414)
+-+...|-.+.+-|..
T Consensus 114 K~iaLANKEsLV~aG~ 129 (385)
T COG0743 114 KTIALANKESLVTAGE 129 (385)
T ss_pred CceeecchhhhhcccH
Confidence 9999998888776653
No 255
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=26.65 E-value=4.5e+02 Score=23.21 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCCCccc----ccCCCe-EEEEeecCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 015058 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAI----LEHPSI-HIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (414)
Q Consensus 20 r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~----~~~~~i-~i~~v~~~~~~~~~~~~~~~~~~~l~k~l~~~~~l~~~ 94 (414)
.+...|.+|+++.|.+|++++.++.....+. ....|+ +++.+..... . ...+.. ..+.+.+.
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~--~--~~~~~~---~a~~l~~~------ 85 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPAL--A--EYDPEA---YADALAEL------ 85 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGG--T--TC-HHH---HHHHHHHH------
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccc--c--ccCHHH---HHHHHHHH------
Confidence 3445566777767889999988742222222 223454 6777762111 1 011111 12222221
Q ss_pred HhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCc
Q 015058 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (414)
Q Consensus 95 l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~ 137 (414)
.+..+||+|++...+. ..-++++++. .++.|++.++-..
T Consensus 86 --~~~~~~~lVl~~~t~~-g~~la~~lA~-~L~~~~v~~v~~l 124 (164)
T PF01012_consen 86 --IKEEGPDLVLFGSTSF-GRDLAPRLAA-RLGAPLVTDVTDL 124 (164)
T ss_dssp --HHHHT-SEEEEESSHH-HHHHHHHHHH-HHT-EEEEEEEEE
T ss_pred --HHhcCCCEEEEcCcCC-CCcHHHHHHH-HhCCCccceEEEE
Confidence 1237999999887621 1224445544 4688998766554
No 256
>PLN02670 transferase, transferring glycosyl groups
Probab=26.32 E-value=8.3e+02 Score=26.20 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCC---hHHHHHHHHHHhhCCCcEEEEecCCCCC-Cccc-c-cCCCeEEEEee
Q 015058 7 ACVVVLGDLGRS---PRMQYQALSLARQMSLEVDVVAYGGSKP-HAAI-L-EHPSIHIHTMT 62 (414)
Q Consensus 7 ~~v~~~~d~~~~---~r~~~~a~~La~~~g~eV~vv~~~~~~~-~~~~-~-~~~~i~i~~v~ 62 (414)
.+|++.- |... .=|...|+.|+.+ |+.|++++...+.. .... . ..++|+++.++
T Consensus 7 ~HVvl~P-~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp 66 (472)
T PLN02670 7 LHVAMFP-WLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKIPSQLSSSITLVSFP 66 (472)
T ss_pred cEEEEeC-ChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhccccCCCCeeEEECC
Confidence 3444444 4333 3455788889886 99999998765321 1100 0 12458888877
No 257
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.22 E-value=2.8e+02 Score=27.50 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC
Q 015058 272 DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS 351 (414)
Q Consensus 272 g~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~ 351 (414)
+.+...+|++.+.++ .++..|+|.+|.+ +..++.++.. -..+.+.+..-+
T Consensus 189 ~~~Yy~~Ai~~i~~~---------------------------~~~~~f~ifSDD~--~w~k~~l~~~-~~~~~~~~~~~~ 238 (298)
T PF01531_consen 189 DKDYYKKAIEYIREK---------------------------VKNPKFFIFSDDI--EWCKENLKFS-NGDVYFSGNNSP 238 (298)
T ss_pred CHHHHHHHHHHHHHh---------------------------CCCCEEEEEcCCH--HHHHHHHhhc-CCcEEEECCCCH
Confidence 567888999988763 5678999998754 4444444432 225667653346
Q ss_pred hhhHHHHHhhccEEEeec
Q 015058 352 AEDYPLLLGSADLGVCLH 369 (414)
Q Consensus 352 ~ed~~~~l~~aDl~V~~~ 369 (414)
.+|+. +|+.||.+|..+
T Consensus 239 ~~Dl~-lms~C~~~Iisn 255 (298)
T PF01531_consen 239 YEDLY-LMSQCKHFIISN 255 (298)
T ss_pred HHHHH-HHHhCCcEEECC
Confidence 77888 589999998754
No 258
>PLN03015 UDP-glucosyl transferase
Probab=26.20 E-value=4.5e+02 Score=28.23 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.5
Q ss_pred EEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEe
Q 015058 343 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 343 V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
+...+ |+|..++-.. .+...||. |. |- +.++|++++|+|+|+-
T Consensus 337 l~v~~-W~PQ~~vL~h-~~vg~fvt-H~---Gw---nS~~Eai~~GvP~v~~ 379 (470)
T PLN03015 337 LVVTQ-WAPQVEILSH-RSIGGFLS-HC---GW---SSVLESLTKGVPIVAW 379 (470)
T ss_pred eEEEe-cCCHHHHhcc-CccCeEEe-cC---Cc---hhHHHHHHcCCCEEec
Confidence 45555 9998885542 22333552 21 21 3689999999999983
No 259
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.95 E-value=4.3e+02 Score=24.01 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=48.7
Q ss_pred EEEEcCCCChH---HHHHHHHHcCCC-cEEEecCCCChhhHHHHHhh-----ccEEEeeccCCCCCCCchhHHHHHHcCC
Q 015058 319 FIITGKGPDKE---SYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGS-----ADLGVCLHTSSSGLDLPMKVCYCWYSRY 389 (414)
Q Consensus 319 liI~G~G~~~e---~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~-----aDl~V~~~~s~~g~~lP~kl~Eama~G~ 389 (414)
.+|.|.-.+.+ +..+..+++|+. .+...+..-..+++.+++.. +|++|..-.-+ -.||..+ +-..-+
T Consensus 4 ~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~--a~Lpgvv--a~~t~~ 79 (150)
T PF00731_consen 4 AIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMS--AALPGVV--ASLTTL 79 (150)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----HHHHH--HHHSSS
T ss_pred EEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCc--ccchhhh--eeccCC
Confidence 35677666654 444556677887 77777655566677777654 57887532211 1366543 333478
Q ss_pred eEEEeeeCCcccchhhhhhh
Q 015058 390 SLKLLWTCSVVGCLFVLFLT 409 (414)
Q Consensus 390 Pvi~s~~~~~~~~~~~~~~~ 409 (414)
|||+--+.+-.+..++-.++
T Consensus 80 PVIgvP~~~~~~~g~d~l~S 99 (150)
T PF00731_consen 80 PVIGVPVSSGYLGGLDSLLS 99 (150)
T ss_dssp -EEEEEE-STTTTTHHHHHH
T ss_pred CEEEeecCcccccCcccHHH
Confidence 88887777666666654443
No 260
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.87 E-value=93 Score=26.75 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=34.8
Q ss_pred EEEEEcCC----CChHHHHHHHHHcCCCcEE-Eec---------------CCCChhhHHHHHhhccEEEee
Q 015058 318 LFIITGKG----PDKESYEEKIRRLRLKRVA-FRT---------------MWLSAEDYPLLLGSADLGVCL 368 (414)
Q Consensus 318 ~liI~G~G----~~~e~l~~~i~~l~l~~V~-f~g---------------~~v~~ed~~~~l~~aDl~V~~ 368 (414)
-++++|.| ...++++++++++|+.-++ +.+ +........+++..||+.++.
T Consensus 14 P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 14 PVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred EEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 36778876 4578999999999885222 221 122467778999999998865
No 261
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=25.70 E-value=1.8e+02 Score=27.78 Aligned_cols=57 Identities=16% Similarity=0.020 Sum_probs=36.5
Q ss_pred CC-cEEEecCCCChh---hHHHHHhhccEEEeeccCCCCCCCchh-HH-HHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK-VC-YCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~e---d~~~~l~~aDl~V~~~~s~~g~~lP~k-l~-Eama~G~Pvi~s~~~~ 398 (414)
++ +|.+.|..++.+ ...+.+..||++++.-+|..- .|.. +. .|...|.|++.-+-..
T Consensus 146 lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V--~p~~~l~~~a~~~g~~~i~iN~~~ 208 (222)
T cd01413 146 IRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVV--YPANLLPLIAKENGAKLVIVNADE 208 (222)
T ss_pred cCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEe--ccHhHHHHHHHHcCCeEEEEcCCC
Confidence 45 788888788864 445566789999876444321 2332 22 3456899999877654
No 262
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.62 E-value=3.1e+02 Score=27.09 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEEEeee
Q 015058 329 ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLKLLWT 396 (414)
Q Consensus 329 e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi~s~~ 396 (414)
+.+.+..+++|+. -..+ ...+++..+...+|++-..+..... .| -+-++-..|+||+.++-
T Consensus 81 ~~l~~~~~~~Gl~~~te~----~d~~~~~~l~~~vd~~kIga~~~~n--~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 81 KILKEVGDKYNLPVVTEV----MDTRDVEEVADYADMLQIGSRNMQN--FE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHcCCCEEEee----CChhhHHHHHHhCCEEEECcccccC--HH-HHHHHhcCCCcEEEeCC
Confidence 4566677778876 2233 2566666666668877554332222 22 23344457999998754
No 263
>PRK14851 hypothetical protein; Provisional
Probab=25.28 E-value=1.4e+02 Score=33.55 Aligned_cols=75 Identities=7% Similarity=-0.016 Sum_probs=52.0
Q ss_pred hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCc--hhHH-HHHHcCCeEEEeeeCCcccch
Q 015058 328 KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLP--MKVC-YCWYSRYSLKLLWTCSVVGCL 403 (414)
Q Consensus 328 ~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP--~kl~-Eama~G~Pvi~s~~~~~~~~~ 403 (414)
-+...+.+++.+-. +|.-....+..+++..++..+|+.|..... ..+. ..+. .|...|+|+|.+-+.|..|.+
T Consensus 99 v~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~---~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 99 LAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDF---FQFEIRRTLFNMAREKGIPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCC---CcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence 35567778888776 777666688889999999999998832111 1121 1233 357789999998887777766
Q ss_pred hh
Q 015058 404 FV 405 (414)
Q Consensus 404 ~~ 405 (414)
++
T Consensus 176 ~~ 177 (679)
T PRK14851 176 LV 177 (679)
T ss_pred EE
Confidence 54
No 264
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=25.16 E-value=6.4e+02 Score=24.46 Aligned_cols=78 Identities=10% Similarity=-0.070 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCC-CC----hHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCC-------CCCCCchhH
Q 015058 314 YPRLLFIITGKG-PD----KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKV 381 (414)
Q Consensus 314 ~p~i~liI~G~G-~~----~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~-------~g~~lP~kl 381 (414)
.|++.|+=+-.+ .+ -+++++..+++|.+ |..+- ..+|..+.+..||+..+.-..+ ...++=..+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~-v~~l~---~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l 106 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE-VTGIH---RVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPI 106 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE-EEEec---cchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHH
Confidence 455666543332 12 23466667777876 44443 2356678899999765432111 122344456
Q ss_pred HHHHHcCCeEEEee
Q 015058 382 CYCWYSRYSLKLLW 395 (414)
Q Consensus 382 ~Eama~G~Pvi~s~ 395 (414)
-|+...|+|++.+-
T Consensus 107 ~~~~~~G~~~~G~S 120 (233)
T PRK05282 107 REAVKNGTPYIGWS 120 (233)
T ss_pred HHHHHCCCEEEEEC
Confidence 78889999988643
No 265
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=24.64 E-value=1.3e+02 Score=33.30 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCcEEEEEEcCC-CChHHHHHHHHHc---CCCcEEEecCCCChhhHHHHHhhccEE
Q 015058 314 YPRLLFIITGKG-PDKESYEEKIRRL---RLKRVAFRTMWLSAEDYPLLLGSADLG 365 (414)
Q Consensus 314 ~p~i~liI~G~G-~~~e~l~~~i~~l---~l~~V~f~g~~v~~ed~~~~l~~aDl~ 365 (414)
+| +..+.++.| |+.|+-.++|++| |+++|.|..+ +-+.+...++.|+..
T Consensus 122 ~~-I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPG--tIeqI~svi~IAka~ 174 (717)
T COG4981 122 AP-IDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPG--TIEQIRSVIRIAKAN 174 (717)
T ss_pred CC-cceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCC--cHHHHHHHHHHHhcC
Confidence 55 888888888 8999999999999 8899999754 889999999999864
No 266
>PTZ00124 adenosine deaminase; Provisional
Probab=24.30 E-value=6e+02 Score=26.28 Aligned_cols=86 Identities=10% Similarity=0.114 Sum_probs=51.1
Q ss_pred EEEEE-EcC--CC-ChHHHHHHHHHcCCCcEEEecCCC-ChhhHHHHHhhccEEE--eeccCCCCCC-Cc----hhHHHH
Q 015058 317 LLFII-TGK--GP-DKESYEEKIRRLRLKRVAFRTMWL-SAEDYPLLLGSADLGV--CLHTSSSGLD-LP----MKVCYC 384 (414)
Q Consensus 317 i~liI-~G~--G~-~~e~l~~~i~~l~l~~V~f~g~~v-~~ed~~~~l~~aDl~V--~~~~s~~g~~-lP----~kl~Ea 384 (414)
+++.+ +|+ |+ ..++..+.+..+|.+||-. |-.+ ..+++-.++..-++.+ ||. |....+ ++ --+-..
T Consensus 220 l~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGH-G~~~~~d~~l~~~l~~~~I~lEvCPt-SN~~~~~v~~~~~HPi~~l 297 (362)
T PTZ00124 220 VNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGH-GIRVAESQELIDMVKEKDILLEVCPI-SNVLLNNAKSMDTHPIRKL 297 (362)
T ss_pred CCEEEEeCCCCCCCcchhHHHHHHHhCCCcccc-ccccCCCHHHHHHHHHcCCeEEECCc-chhhhhcCCchhhHHHHHH
Confidence 44544 665 33 3344555677777776655 2233 3567788888888875 652 222111 11 125678
Q ss_pred HHcCCeEE-EeeeCCcccchh
Q 015058 385 WYSRYSLK-LLWTCSVVGCLF 404 (414)
Q Consensus 385 ma~G~Pvi-~s~~~~~~~~~~ 404 (414)
+..|+||. .||..++.|..+
T Consensus 298 ~~~Gv~v~InTDDp~~~~t~l 318 (362)
T PTZ00124 298 YDAGVKVSVNSDDPGMFLTNI 318 (362)
T ss_pred HHCCCcEEEeCCCccccCCCh
Confidence 89999986 477777777644
No 267
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=24.15 E-value=2.9e+02 Score=27.41 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=26.3
Q ss_pred hHHHHHh--hccEEEeeccCCCCCCCchhHHHHHH--cCCeEEE
Q 015058 354 DYPLLLG--SADLGVCLHTSSSGLDLPMKVCYCWY--SRYSLKL 393 (414)
Q Consensus 354 d~~~~l~--~aDl~V~~~~s~~g~~lP~kl~Eama--~G~Pvi~ 393 (414)
++.+.+. .+|+++-.+.. .| -|...++++|+ +..|||-
T Consensus 97 ~L~eav~~~kptvlIG~S~~-~g-~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRV-GG-AFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCC-CC-CCCHHHHHHHhhcCCCCEEE
Confidence 4566666 78888854321 22 37888999999 6789885
No 268
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.85 E-value=2.1e+02 Score=23.84 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=38.8
Q ss_pred EEEEEcCCCChHHHHHH---HHHcCCCcEEEecCCCChhhHH---HHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeE
Q 015058 318 LFIITGKGPDKESYEEK---IRRLRLKRVAFRTMWLSAEDYP---LLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSL 391 (414)
Q Consensus 318 ~liI~G~G~~~e~l~~~---i~~l~l~~V~f~g~~v~~ed~~---~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pv 391 (414)
++.++|.|...-.-+.. ..++|. ++.+.. +.+.+. ..+..-|+.++.+.+.....+-..+=.|-..|.||
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~-~~~~~~---~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~v 77 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGT-PAFFLH---PTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPI 77 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCC-ceEEcc---cchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 46788988765433333 333333 455554 222222 34566788876543322122233334455679999
Q ss_pred EEeee
Q 015058 392 KLLWT 396 (414)
Q Consensus 392 i~s~~ 396 (414)
|+-..
T Consensus 78 i~iT~ 82 (128)
T cd05014 78 IAITG 82 (128)
T ss_pred EEEeC
Confidence 97443
No 269
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=23.77 E-value=1.7e+02 Score=30.25 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=43.9
Q ss_pred CC-cEEEecCCCChh--hHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCcccchh
Q 015058 340 LK-RVAFRTMWLSAE--DYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSVVGCLF 404 (414)
Q Consensus 340 l~-~V~f~g~~v~~e--d~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~~~~~~ 404 (414)
++ +|.|.|..+|.+ +....++.||++++.-+|. ...|...+- +...|.|+|.-|.+-+.|.+|
T Consensus 181 lRPdVVlFGE~lp~~~~~a~~~~~~aDllLVIGTSL--~V~Paa~l~~~a~~~~pvviIN~e~~~~~~~ 247 (349)
T PTZ00410 181 VKPDVVFFGENLPDAFFNVHHDIPEAELLLIIGTSL--QVHPFALLACVVPKDVPRVLFNLERVGGLMF 247 (349)
T ss_pred cCCcEEecCCcCCHHHHHHHHHHHhCCEEEEECcCC--cccCHHHHHHHHhcCCCEEEECccccCCcee
Confidence 45 899999777764 2455678899998764432 223555554 444899999999888877655
No 270
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.76 E-value=1.7e+02 Score=24.07 Aligned_cols=68 Identities=4% Similarity=0.081 Sum_probs=44.2
Q ss_pred EEEEcCCCC----hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH--HHHcCCeE
Q 015058 319 FIITGKGPD----KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY--CWYSRYSL 391 (414)
Q Consensus 319 liI~G~G~~----~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E--ama~G~Pv 391 (414)
++++|.|-. -+.+++.++++|+. .|... +..++..+...+|+.++. +. ...=.+-++ +--.++||
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~----~~~~~~~~~~~~Diil~~--Pq--v~~~~~~i~~~~~~~~~pv 74 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAV----PESELEEYIDDADVVLLG--PQ--VRYMLDEVKKKAAEYGIPV 74 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEe----cHHHHHHhcCCCCEEEEC--hh--HHHHHHHHHHHhccCCCcE
Confidence 567888753 45788888999998 77775 477788888999988742 11 111112233 23467888
Q ss_pred EEe
Q 015058 392 KLL 394 (414)
Q Consensus 392 i~s 394 (414)
..-
T Consensus 75 ~~I 77 (96)
T cd05564 75 AVI 77 (96)
T ss_pred EEc
Confidence 764
No 271
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=23.56 E-value=2.6e+02 Score=20.20 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=39.8
Q ss_pred CcEEEEEEc--CCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHHHHHcCCeEE
Q 015058 315 PRLLFIITG--KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCYCWYSRYSLK 392 (414)
Q Consensus 315 p~i~liI~G--~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~Eama~G~Pvi 392 (414)
.++.|.+.| .++.++.+++++++.|-..+.-.. .. .++.+|+.... . ...+...+...+.|+|
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~----~~-------~~thvi~~~~~--~--~~~~~~~~~~~~~~iV 68 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGKVTSSLS----SK-------TTTHVIVGSPE--G--GKLELLLAIALGIPIV 68 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccC----cc-------ceeEEEEcCCC--C--ccHHHHHHHHcCCCCc
Confidence 468888888 457889999999998876322222 11 45555543211 1 1112577788888887
Q ss_pred E
Q 015058 393 L 393 (414)
Q Consensus 393 ~ 393 (414)
.
T Consensus 69 ~ 69 (80)
T smart00292 69 T 69 (80)
T ss_pred c
Confidence 5
No 272
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=23.17 E-value=4.2e+02 Score=30.33 Aligned_cols=115 Identities=21% Similarity=0.126 Sum_probs=69.4
Q ss_pred ccCCCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEEEEEEcCCC-Ch--
Q 015058 252 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP-DK-- 328 (414)
Q Consensus 252 ~l~~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~liI~G~G~-~~-- 328 (414)
.++|+. ++++++-|+++.|.....+.=...+.+.. |+ | ..|.+.+++.|+.. .-
T Consensus 482 ~~~p~~-lfd~~~kRiheYKRq~Lnl~~i~~ly~~i----------------~~--d----~~prv~~iFaGKAhP~y~~ 538 (750)
T COG0058 482 EVDPNA-LFDGQARRIHEYKRQLLNLLDIERLYRIL----------------KE--D----WVPRVQIIFAGKAHPADYA 538 (750)
T ss_pred ccCCCc-ceeeeehhhhhhhhhHHhHhhHHHHHHHH----------------hc--C----CCCceEEEEeccCCCcchH
Confidence 345666 58999999999999876655544444321 11 1 35778889999853 21
Q ss_pred -HHHHH----HHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccC---CCCCCCchhHHHHHHcCCeEEEe
Q 015058 329 -ESYEE----KIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTS---SSGLDLPMKVCYCWYSRYSLKLL 394 (414)
Q Consensus 329 -e~l~~----~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s---~~g~~lP~kl~Eama~G~Pvi~s 394 (414)
+.+.+ .++.-+.. +|.|+. --..+--..++.+|||-...++. -||.+ .|| +|-=|.+-+++
T Consensus 539 aK~iIk~I~~~a~~in~~lkVvFl~-nYdvslA~~iipa~Dvweqis~a~~EASGTs-nMK---~alNGaltigt 608 (750)
T COG0058 539 AKEIIKLINDVADVINNKLKVVFLP-NYDVSLAELLIPAADVWEQIPTAGKEASGTS-NMK---AALNGALTLGT 608 (750)
T ss_pred HHHHHHHHHHHHHhhcccceEEEeC-CCChhHHHhhcccccccccCCCCCccccCcC-cch---HHhcCCceeec
Confidence 12222 23333334 799996 43666677789999998642222 23443 233 55667776664
No 273
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.15 E-value=1.3e+02 Score=26.71 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCC--cEEEecCCCChhhHHHHHhhccEEE
Q 015058 329 ESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGV 366 (414)
Q Consensus 329 e~l~~~i~~l~l~--~V~f~g~~v~~ed~~~~l~~aDl~V 366 (414)
+-+++..+++|++ ||.+. |+|..|-..+-...+-|+
T Consensus 81 ~~lke~l~elgie~eRv~~~--wiSa~E~ekf~e~~~efv 118 (132)
T COG1908 81 ELLKELLKELGIEPERVRVL--WISAAEGEKFAETINEFV 118 (132)
T ss_pred HHHHHHHHHhCCCcceEEEE--EEehhhHHHHHHHHHHHH
Confidence 5678889999997 88885 899988888877777665
No 274
>PLN02210 UDP-glucosyl transferase
Probab=22.93 E-value=9.2e+02 Score=25.56 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=28.6
Q ss_pred cEEEecCCCChhhHHHHHhhcc--EEEeeccCCCCCCCchhHHHHHHcCCeEEE
Q 015058 342 RVAFRTMWLSAEDYPLLLGSAD--LGVCLHTSSSGLDLPMKVCYCWYSRYSLKL 393 (414)
Q Consensus 342 ~V~f~g~~v~~ed~~~~l~~aD--l~V~~~~s~~g~~lP~kl~Eama~G~Pvi~ 393 (414)
+....+ |+|..+ +|+-++ .||. |. |- +.++|++++|+|+|+
T Consensus 325 ~g~v~~-w~PQ~~---iL~h~~vg~Fit-H~---G~---nS~~Eai~~GVP~v~ 367 (456)
T PLN02210 325 QGVVLE-WSPQEK---ILSHMAISCFVT-HC---GW---NSTIETVVAGVPVVA 367 (456)
T ss_pred CeEEEe-cCCHHH---HhcCcCcCeEEe-eC---Cc---ccHHHHHHcCCCEEe
Confidence 444555 999876 677777 4552 32 22 258999999999998
No 275
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=22.91 E-value=3.2e+02 Score=27.84 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=50.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCCh-----------hhHHHHHhhccEEEe--eccCCCCCC-CchhH
Q 015058 316 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSA-----------EDYPLLLGSADLGVC--LHTSSSGLD-LPMKV 381 (414)
Q Consensus 316 ~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~-----------ed~~~~l~~aDl~V~--~~~s~~g~~-lP~kl 381 (414)
+-++-|+|-|.--..+-+.++.+|.+ |....++.+. +++..+|+.||+.++ |-+.. ..+ +....
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~e-T~g~i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPE-TRGLINAEE 219 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcc-hhcccCHHH
Confidence 45899999999888888888888875 6655544544 459999999999875 22221 122 56667
Q ss_pred HHHHHcCC
Q 015058 382 CYCWYSRY 389 (414)
Q Consensus 382 ~Eama~G~ 389 (414)
+..|--|-
T Consensus 220 ~a~MK~ga 227 (324)
T COG0111 220 LAKMKPGA 227 (324)
T ss_pred HhhCCCCe
Confidence 77776555
No 276
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.41 E-value=2.4e+02 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=26.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCChhhHHHHHh
Q 015058 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG 360 (414)
Q Consensus 315 p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~~ed~~~~l~ 360 (414)
+++.+++.|.++. ++ .+..+++|+..+... .-+.+++..++.
T Consensus 80 ~~i~i~~GG~~~~-~~-~~~~~~~G~d~~~~~--~~~~~~~~~~~~ 121 (122)
T cd02071 80 GDILVVGGGIIPP-ED-YELLKEMGVAEIFGP--GTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEECCCCH-HH-HHHHHHCCCCEEECC--CCCHHHHHHHHh
Confidence 3677777776664 33 355678898855443 347777776654
No 277
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=22.28 E-value=97 Score=25.92 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHhhccEEEeeccC-CCCCCCchhHHHHHHcCCeEEEeeeCCcc
Q 015058 357 LLLGSADLGVCLHTS-SSGLDLPMKVCYCWYSRYSLKLLWTCSVV 400 (414)
Q Consensus 357 ~~l~~aDl~V~~~~s-~~g~~lP~kl~Eama~G~Pvi~s~~~~~~ 400 (414)
..+..||++|..-.. ....|-..-+-.|.+.|+||++.......
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 478899998853222 11223344566678999999997766554
No 278
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=22.10 E-value=2.6e+02 Score=27.90 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEecCCCCCCc------------ccccCCCeEEEEeecCCCCCCCCCCchHHHHHHHHH
Q 015058 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHA------------AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (414)
Q Consensus 17 ~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~------------~~~~~~~i~i~~v~~~~~~~~~~~~~~~~~~~l~k~ 84 (414)
.|.-+...+..+.++ |+.|-|++-+++.|+. ....++++.|..++ ... . ..-+ ...
T Consensus 42 KSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--tRG---~---lGGl---s~~ 109 (266)
T PF03308_consen 42 KSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--TRG---S---LGGL---SRA 109 (266)
T ss_dssp HHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----S---S---HHHH---HHH
T ss_pred HHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--cCC---C---CCCc---cHh
Confidence 344566677788886 9999999987765431 12346899999998 332 1 1112 122
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCchHHHHHHHHHhhcCCeEEEEEcCcc
Q 015058 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (414)
Q Consensus 85 l~~~~~l~~~l~~k~~~~Dvvh~~~pp~~~~~~~~~la~~~~~~~~Iv~~H~~~ 138 (414)
......+ | +...||+|++-+--....-+-. .....+-+++..-+.+
T Consensus 110 t~~~v~l----l-~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 110 TRDAVRL----L-DAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLG 155 (266)
T ss_dssp HHHHHHH----H-HHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTC
T ss_pred HHHHHHH----H-HHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCc
Confidence 2222111 1 3379999999975322332211 3445555555555544
No 279
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.04 E-value=2e+02 Score=26.12 Aligned_cols=77 Identities=14% Similarity=-0.030 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcCCCcEEEecCCCC-----------hhhHHHHHhhccEEEe--eccCCCCCCCchhH
Q 015058 315 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVC--LHTSSSGLDLPMKV 381 (414)
Q Consensus 315 p~i~liI~G~G~~~e~l~~~i~~l~l~~V~f~g~~v~-----------~ed~~~~l~~aDl~V~--~~~s~~g~~lP~kl 381 (414)
.+-++.|+|-|.--..+-+..+.+|. +|........ .+++.++++.||+.++ |.+....--+....
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 35689999999998889999998887 5666543322 3567889999999874 32222111256677
Q ss_pred HHHHHcCCeEE
Q 015058 382 CYCWYSRYSLK 392 (414)
Q Consensus 382 ~Eama~G~Pvi 392 (414)
++.|--|.=+|
T Consensus 114 l~~mk~ga~lv 124 (178)
T PF02826_consen 114 LAKMKPGAVLV 124 (178)
T ss_dssp HHTSTTTEEEE
T ss_pred eeccccceEEE
Confidence 77777665443
No 280
>PRK04531 acetylglutamate kinase; Provisional
Probab=21.92 E-value=1.7e+02 Score=30.73 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=42.2
Q ss_pred CCCCeEEEEeccCCCCCChHHHHHHHHHhHHHHhhhhccCCCchhhhhhhhhcCCccCCCCcEE-EEEEcCCCChHHHHH
Q 015058 255 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPDKESYEE 333 (414)
Q Consensus 255 ~~~~~~i~~vgrl~~~Kg~~~LleA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-liI~G~G~~~e~l~~ 333 (414)
|.+.++|-.-|+.-. .+.+.+.+.+..+.+. .++ +++.|.||. +.+
T Consensus 35 ~~~~~VIKiGG~~l~-~~~~~l~~dla~L~~~-----------------------------G~~~VlVHGggpq---I~~ 81 (398)
T PRK04531 35 AERFAVIKVGGAVLR-DDLEALASSLSFLQEV-----------------------------GLTPIVVHGAGPQ---LDA 81 (398)
T ss_pred CCcEEEEEEChHHhh-cCHHHHHHHHHHHHHC-----------------------------CCcEEEEECCCHH---HHH
Confidence 445555556666654 3567777777776641 344 456788887 456
Q ss_pred HHHHcCCCcEEEecCCCChhhHHHH
Q 015058 334 KIRRLRLKRVAFRTMWLSAEDYPLL 358 (414)
Q Consensus 334 ~i~~l~l~~V~f~g~~v~~ed~~~~ 358 (414)
..+++|++.-..-|.++..++...+
T Consensus 82 ~l~~~gie~~~v~G~RVTd~~tl~v 106 (398)
T PRK04531 82 ELDAAGIEKETVNGLRVTSPEALAI 106 (398)
T ss_pred HHHHcCCCcEEECCEecCCHHHHHH
Confidence 7788898722223445555544333
No 281
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=21.69 E-value=2.1e+02 Score=27.70 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=37.4
Q ss_pred CC-cEEEecCCCChh---hHHHHHhhccEEEeeccCCCCCCCchhHH--HHHHcCCeEEEeeeC
Q 015058 340 LK-RVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVC--YCWYSRYSLKLLWTC 397 (414)
Q Consensus 340 l~-~V~f~g~~v~~e---d~~~~l~~aDl~V~~~~s~~g~~lP~kl~--Eama~G~Pvi~s~~~ 397 (414)
++ +|.|.|..+|.+ +....+..||++++.-+|.. -.|..-+ .+...|.|++.-+..
T Consensus 153 lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~--V~pa~~l~~~~~~~g~~~i~iN~~ 214 (244)
T PRK14138 153 IRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLV--VYPAAELPLITVRSGGKLVIVNLG 214 (244)
T ss_pred ECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCe--eecHhHHHHHHHHcCCeEEEEcCC
Confidence 45 899999778764 45577789999987644322 1244333 466789999886653
No 282
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.63 E-value=2.1e+02 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=34.7
Q ss_pred EEEEcCCCC----hHHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEe
Q 015058 319 FIITGKGPD----KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVC 367 (414)
Q Consensus 319 liI~G~G~~----~e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~ 367 (414)
++++|.|-. -+.+++.+++.|++ .|.-. +..+++.....+|+.++
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~----~~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG----SYGAAGEKLDDADVVLL 56 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe----cHHHHHhhcCCCCEEEE
Confidence 577888853 36788888889998 66665 47778888899998874
No 283
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=6.4e+02 Score=23.10 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCCCCCCcccccCCCeEEEEee
Q 015058 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (414)
Q Consensus 7 ~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~~~~~~~~~~~~~i~i~~v~ 62 (414)
++|.+-+| .+. +.......|++.|.+|++|+...-.+ ...+.++...+.
T Consensus 2 ~~I~VDAD-ACP--Vk~~i~r~A~r~~~~v~~Van~~~~~----~~~~~i~~v~V~ 50 (150)
T COG1671 2 MTIWVDAD-ACP--VKDEIYRVAERMGLKVTFVANFPHRV----PPSPEIRTVVVD 50 (150)
T ss_pred ceEEEeCC-CCc--hHHHHHHHHHHhCCeEEEEeCCCccC----CCCCceeEEEec
Confidence 46777777 344 77788888888899999999765331 135666666665
No 284
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=21.13 E-value=2.6e+02 Score=26.88 Aligned_cols=57 Identities=19% Similarity=0.045 Sum_probs=37.7
Q ss_pred CC-cEEEecCCCChh---hHHHHHhhccEEEeeccCCCCCCCchh-HHHHHHcCCeEEEeeeCC
Q 015058 340 LK-RVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK-VCYCWYSRYSLKLLWTCS 398 (414)
Q Consensus 340 l~-~V~f~g~~v~~e---d~~~~l~~aDl~V~~~~s~~g~~lP~k-l~Eama~G~Pvi~s~~~~ 398 (414)
+. +|.+.|..+|.+ .....++.||++++.-+|.. -.|.+ +.++...|.|+|.-+...
T Consensus 150 lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~--V~pa~~l~~~~~~~~~~v~iN~~~ 211 (235)
T cd01408 150 VKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLK--VAPFASLPSRVPSEVPRVLINREP 211 (235)
T ss_pred ccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCe--eccHHHHHHHHhCCCcEEEEeCCC
Confidence 44 888988777764 34455788999987644332 23443 455667889999876554
No 285
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=20.77 E-value=2.1e+02 Score=22.86 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHhccCCEEEEeCHHH---HHHHHHhhCC
Q 015058 150 SHFVSIYRWIEKYYGKMANGCLCVTQAM---QHELAQNWGI 187 (414)
Q Consensus 150 ~~~~~i~~~~Ek~~~k~ad~ii~vS~~~---~~~l~~~~gi 187 (414)
..+.+-..++||...+++|.++.+|+.. +..+++..|+
T Consensus 29 ~~f~rk~~lYek~~grk~~r~ivVtp~id~~a~~~A~~LGI 69 (70)
T PF07788_consen 29 YIFKRKAELYEKVHGRKVDRLIVVTPYIDDRAKEMAEELGI 69 (70)
T ss_pred HHHHHHHHHHHHHHCCCcceEEEEEeecCHHHHHHHHHhCC
Confidence 3456777899999999999999887733 2234555565
No 286
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=20.76 E-value=2.4e+02 Score=28.74 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=48.0
Q ss_pred cCCCCh-HHHHHHHHHcCCC-cEEEecCCCChhhHHHHHhhccEEEeeccCCCCCCCchhHHH-HHHcCCeEEEeeeCCc
Q 015058 323 GKGPDK-ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVCY-CWYSRYSLKLLWTCSV 399 (414)
Q Consensus 323 G~G~~~-e~l~~~i~~l~l~-~V~f~g~~v~~ed~~~~l~~aDl~V~~~~s~~g~~lP~kl~E-ama~G~Pvi~s~~~~~ 399 (414)
|.|..| +...+.+++++-. .|.-....+..+++..+++.+|+.|....+.. --..+-+ |...|+|.|...+.|.
T Consensus 76 ~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~---~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 76 KQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFD---TRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred cCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHH---HHHHHHHHHHHcCCCEEEEEeccc
Confidence 445333 4566677777655 55554435567788899999999885422111 0111222 3567999998877777
Q ss_pred ccchh
Q 015058 400 VGCLF 404 (414)
Q Consensus 400 ~~~~~ 404 (414)
.|.++
T Consensus 153 ~G~~~ 157 (338)
T PRK12475 153 YGVTY 157 (338)
T ss_pred EEEEE
Confidence 66543
No 287
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=20.53 E-value=1.3e+02 Score=25.80 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=26.6
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhhCCCcEEEEecCC
Q 015058 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (414)
Q Consensus 5 ~~~~v~~~~d~~~~~r~~~~a~~La~~~g~eV~vv~~~~ 43 (414)
||+.+.+.|..+.. .....+..|.++ |++|+++....
T Consensus 1 k~i~l~vtGs~~~~-~~~~~l~~L~~~-g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAY-KAPDLLRRLKRA-GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGG-GHHHHHHHHHTT-TSEEEEEESHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHhhC-CCEEEEEECCc
Confidence 57788888875444 377888899886 99999987553
No 288
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=20.48 E-value=7.5e+02 Score=23.82 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.6
Q ss_pred cEEEEEEcC---CCChHHHHHHHHHcCCCcEEEecCC-CChhhHHHHHh
Q 015058 316 RLLFIITGK---GPDKESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLG 360 (414)
Q Consensus 316 ~i~liI~G~---G~~~e~l~~~i~~l~l~~V~f~g~~-v~~ed~~~~l~ 360 (414)
.+.-++.|+ -..++..+..++++|++-+..+ | .+++++.+.+.
T Consensus 85 gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~PL--W~~d~~~l~e~i~ 131 (222)
T TIGR00289 85 DVEALCIGAIESNYQKSRIDKVCRELGLKSIAPL--WHADPEKLMYEVA 131 (222)
T ss_pred CCCEEEECccccHHHHHHHHHHHHHcCCEEeccc--cCCCHHHHHHHHH
Confidence 367788986 3357889999999999855554 4 46667766553
Done!