Query 015059
Match_columns 414
No_of_seqs 96 out of 98
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2llw_A Heat shock protein STI1 99.6 4E-16 1.4E-20 122.8 2.6 53 361-413 6-58 (71)
2 2lnm_A Protein TIC 40, chlorop 99.6 9.9E-16 3.4E-20 116.2 4.6 50 364-413 1-50 (62)
3 2llv_A Heat shock protein STI1 99.2 3.2E-13 1.1E-17 105.2 -2.2 48 366-413 14-62 (71)
4 2kqz_A Proteasomal ubiquitin r 96.2 0.0011 3.8E-08 58.6 0.8 54 275-328 38-97 (155)
5 2kr0_A Proteasomal ubiquitin r 96.0 0.0029 1E-07 63.6 3.2 52 274-325 293-347 (411)
6 2lnm_A Protein TIC 40, chlorop 94.9 0.03 1E-06 42.2 4.4 53 280-332 3-60 (62)
7 2llw_A Heat shock protein STI1 92.8 0.083 2.9E-06 41.4 3.5 50 279-328 10-64 (71)
8 2llv_A Heat shock protein STI1 91.9 0.076 2.6E-06 41.1 2.3 36 284-328 8-44 (71)
9 1q1f_A Neuroglobin; globin fol 85.9 3.9 0.00013 33.1 8.5 110 277-400 23-143 (151)
10 2qsf_X RAD23, UV excision repa 73.1 1.4 4.8E-05 39.8 1.9 37 282-322 25-67 (171)
11 1out_B Hemoglobin I; heme, oxy 63.0 24 0.00081 29.2 7.2 109 277-399 23-139 (146)
12 2w72_C Human hemoglobin A; iro 60.9 29 0.001 28.1 7.3 103 277-399 24-134 (141)
13 1v4x_B Hemoglobin beta chain; 60.5 32 0.0011 28.4 7.6 105 277-399 23-139 (146)
14 3d1k_B Hemoglobin subunit beta 60.0 28 0.00095 28.7 7.1 105 277-399 23-139 (146)
15 1a6m_A Myoglobin; heme protein 59.9 49 0.0017 27.3 8.6 105 277-399 24-140 (151)
16 3bom_B Hemoglobin subunit beta 59.5 20 0.00069 29.7 6.2 109 277-399 23-140 (147)
17 2aa1_B Hemoglobin beta-C chain 57.9 35 0.0012 28.2 7.4 105 277-399 23-139 (146)
18 3g46_A Globin-1; oxygen transp 53.6 39 0.0013 27.7 7.0 98 277-396 32-141 (146)
19 4hrt_A Globin-2 A chain; oxyge 52.5 38 0.0013 28.0 6.8 99 277-396 33-145 (150)
20 1lhs_A Myoglobin; oxygen stora 51.8 72 0.0025 26.4 8.4 110 277-404 24-147 (153)
21 2w72_B Human hemoglobin A; iro 51.5 48 0.0016 27.1 7.2 105 277-399 23-139 (146)
22 2bk9_A CG9734-PA; oxygen trans 50.7 59 0.002 26.6 7.6 104 277-399 23-140 (153)
23 1mba_A Myoglobin; oxygen stora 49.7 40 0.0014 27.3 6.4 105 277-401 25-142 (147)
24 2r80_A Hemoglobin subunit alph 49.1 38 0.0013 27.7 6.2 101 276-399 23-134 (141)
25 3pt8_B Hemoglobin III; oxygen 47.1 1.2E+02 0.0039 24.8 8.9 105 277-400 26-143 (152)
26 3fse_A Two-domain protein cont 46.8 47 0.0016 32.4 7.4 103 277-405 224-338 (365)
27 2fv2_A RCD1 required for cell 45.9 21 0.00072 34.4 4.7 52 279-330 216-267 (268)
28 1cg5_B Protein (hemoglobin); o 43.7 76 0.0026 26.3 7.3 101 277-399 23-134 (141)
29 2r80_B Hemoglobin subunit beta 43.7 86 0.003 25.6 7.6 109 277-399 23-139 (146)
30 1out_A Hemoglobin I; heme, oxy 40.3 78 0.0027 26.0 6.8 100 277-399 25-136 (143)
31 1spg_A Hemoglobin; carbon mono 39.3 66 0.0023 26.4 6.2 100 277-399 25-137 (144)
32 3bom_A Hemoglobin subunit alph 38.9 62 0.0021 26.5 5.9 100 277-399 25-136 (143)
33 1wmu_A Hemoglobin D alpha chai 38.3 1.4E+02 0.0047 24.1 7.9 103 277-399 24-134 (141)
34 2dc3_A Cytoglobin; myoglobin, 38.2 1.6E+02 0.0055 25.4 8.8 105 277-399 44-163 (193)
35 3d1k_A Hemoglobin subunit alph 36.7 65 0.0022 26.2 5.7 100 277-399 24-135 (142)
36 1x3k_A Hemoglobin component V; 35.2 1.1E+02 0.0037 25.3 6.9 101 277-399 27-138 (152)
37 3mkb_A Hemoglobin subunit alph 34.3 47 0.0016 27.6 4.6 104 277-399 24-133 (140)
38 1cg5_A Protein (hemoglobin); o 33.0 1.9E+02 0.0066 23.5 8.0 99 277-399 24-134 (141)
39 1xq5_A Hemoglobin alpha-1 chai 32.3 1.2E+02 0.0042 24.7 6.7 100 277-399 25-136 (143)
40 1jeb_A Hemoglobin zeta chain; 31.9 1.2E+02 0.0043 24.4 6.6 103 277-399 25-135 (142)
41 2yru_A Steroid receptor RNA ac 31.9 21 0.00073 30.1 2.1 45 307-359 20-67 (118)
42 1zoq_C CREB-binding protein, i 31.1 43 0.0015 25.0 3.3 17 338-356 5-21 (47)
43 1v54_M VIIIB, IX, cytochrome C 30.7 38 0.0013 25.0 3.0 29 98-126 10-41 (46)
44 2lhb_A Hemoglobin V (cyano Met 30.5 57 0.0019 26.7 4.4 74 277-366 33-115 (149)
45 2w72_C Human hemoglobin A; iro 30.4 42 0.0014 27.2 3.5 49 352-400 9-76 (141)
46 3al0_B Aspartyl/glutamyl-tRNA( 30.1 27 0.00092 35.9 2.8 69 339-412 379-453 (482)
47 1c7c_A Protein (deoxyhemoglobi 28.9 1.7E+02 0.0057 26.6 7.6 100 277-400 24-135 (283)
48 3cuq_A Vacuolar-sorting protei 27.6 30 0.001 32.4 2.5 20 314-333 36-55 (234)
49 1tu9_A Hypothetical protein PA 24.0 47 0.0016 26.5 2.7 47 352-399 8-67 (134)
50 3gkx_A Putative ARSC family re 23.9 35 0.0012 27.8 1.9 45 320-369 18-62 (120)
51 1c7c_A Protein (deoxyhemoglobi 23.7 1.5E+02 0.0051 26.9 6.3 103 277-399 166-276 (283)
52 1u5t_A Appears to BE functiona 23.3 34 0.0011 32.1 2.0 20 314-333 56-75 (233)
53 3rdw_A Putative arsenate reduc 21.8 37 0.0013 27.7 1.7 16 352-367 46-62 (121)
54 2y69_M Cytochrome C oxidase po 21.5 66 0.0023 25.6 3.0 28 98-125 34-64 (70)
55 3ltm_A Alpha-REP4; protein eng 21.5 2.1E+02 0.007 23.2 6.2 115 278-397 20-155 (211)
56 2nrl_A Myoglobin; transport pr 21.1 2E+02 0.0067 23.5 6.0 102 277-399 21-134 (147)
57 1b0b_A Hemoglobin; hemoprotein 20.5 83 0.0028 25.3 3.6 74 277-366 24-105 (142)
58 3fz4_A Putative arsenate reduc 20.2 58 0.002 26.5 2.5 17 352-368 44-60 (120)
No 1
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=4e-16 Score=122.79 Aligned_cols=53 Identities=32% Similarity=0.520 Sum_probs=51.0
Q ss_pred CCCcHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccC
Q 015059 361 GLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413 (414)
Q Consensus 361 GmtP~e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~ 413 (414)
|-++++.+.++|+||||+++|+||+||+|+|||++||+++.||++||||+++|
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i 58 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKI 58 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHH
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999876
No 2
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=9.9e-16 Score=116.24 Aligned_cols=50 Identities=72% Similarity=1.206 Sum_probs=48.4
Q ss_pred cHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccC
Q 015059 364 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413 (414)
Q Consensus 364 P~e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~ 413 (414)
|+++++||++|||++++|+||+|++|||||.+||+++.||++||+|+++|
T Consensus 1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~ 50 (62)
T 2lnm_A 1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVF 50 (62)
T ss_dssp CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHH
Confidence 68899999999999999999999999999999999999999999999876
No 3
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.2e-13 Score=105.18 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=45.9
Q ss_pred HHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhh-hccChhhhccC
Q 015059 366 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVFSDF 413 (414)
Q Consensus 366 e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisK-YqnnPKVmnl~ 413 (414)
+++.||++|||++++|+||||+++|+||.+||+||.+ |.+||+|+++|
T Consensus 14 ~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l 62 (71)
T 2llv_A 14 NLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIM 62 (71)
T ss_dssp SCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHH
Confidence 3678999999999999999999999999999999999 99999999886
No 4
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=96.16 E-value=0.0011 Score=58.62 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=46.6
Q ss_pred ccccHHHHHHhhcChhhhhhhccCCCcccC---ChHHHHHHhhChHHHHHHH---HHHHh
Q 015059 275 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQ---EMLDG 328 (414)
Q Consensus 275 ~~~~v~~~e~M~~dP~~Qkm~ypyLPe~MR---Np~tfk~ml~NP~yr~QLe---~ml~~ 328 (414)
..|+.|.|..+++||++++-+++|||+.-+ +++-++-.|+.||||+.|. ..|..
T Consensus 38 dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~AL~s 97 (155)
T 2kqz_A 38 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALAS 97 (155)
T ss_dssp HHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 457778889999999999999999999875 8999999999999999885 44555
No 5
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=96.04 E-value=0.0029 Score=63.55 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=44.7
Q ss_pred CccccHHHHHHhhcChhhhhhhccCCCcccC---ChHHHHHHhhChHHHHHHHHH
Q 015059 274 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEM 325 (414)
Q Consensus 274 ~~~~~v~~~e~M~~dP~~Qkm~ypyLPe~MR---Np~tfk~ml~NP~yr~QLe~m 325 (414)
...|+.|.|..++.||++++-++|||||.-. .++-++-.|+.|||+|+|+-.
T Consensus 293 ~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~f 347 (411)
T 2kr0_A 293 ASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF 347 (411)
T ss_dssp GGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHH
T ss_pred HHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHH
Confidence 3457899999999999999999999998543 778888889999999999643
No 6
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=94.87 E-value=0.03 Score=42.18 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHhhcChhhhhhhc-----cCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCC
Q 015059 280 DTLEKLMEDPQVQKMVY-----PSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCES 332 (414)
Q Consensus 280 ~~~e~M~~dP~~Qkm~y-----pyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~ 332 (414)
|.+++++.||+++.++= -.|=+-++||..+-..++||.+++-++.++.-+||-
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~ 60 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM 60 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence 44555555555554432 234456789999988999999999999999888763
No 7
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.083 Score=41.45 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=31.0
Q ss_pred HHHHHHhhcChhhhhhh-----ccCCCcccCChHHHHHHhhChHHHHHHHHHHHh
Q 015059 279 VDTLEKLMEDPQVQKMV-----YPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG 328 (414)
Q Consensus 279 v~~~e~M~~dP~~Qkm~-----ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~ 328 (414)
-|.+++.|.||++|.+| +-.|=.-|+||.-.--+++||.+++-++.+.+.
T Consensus 10 ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~a 64 (71)
T 2llw_A 10 EETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAA 64 (71)
T ss_dssp HHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence 34555555555555442 111223567888887777888888888877665
No 8
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.076 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=23.5
Q ss_pred HhhcChhh-hhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHh
Q 015059 284 KLMEDPQV-QKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG 328 (414)
Q Consensus 284 ~M~~dP~~-Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~ 328 (414)
+|+.||++ +|+ +.||+|-++| +||+|++-|+++.++
T Consensus 8 ~~f~~p~~~~kl--------~~dP~t~~~~-~DP~~~~~lq~i~~N 44 (71)
T 2llv_A 8 QLFADPNLIENL--------KKNPKTSEMM-KDPQLVAKLIGYKQN 44 (71)
T ss_dssp HHHHSSSCHHHH--------HHSSTTHHHH-HSCTHHHHHHHHHHS
T ss_pred hhccChHHHHHH--------HcChHHHHHh-cCHHHHHHHHHHHHC
Confidence 45666665 332 4566665544 888888888888776
No 9
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=85.93 E-value=3.9 Score=33.12 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=67.3
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|+ |.|..++|-..-.-++.||++|.|-..++...+. ..++|.|.+.-.+.+++
T Consensus 23 ~g~~~y~~lf~~~P~~~~----~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~-------~v~~ld~~~~l~~~l~~ 91 (151)
T 1q1f_A 23 HGTVLFARLFALEPSLLP----LFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDA-------AVTNVEDLSSLEEYLTS 91 (151)
T ss_dssp HHHHHHHHHHHHCGGGGG----GCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHH-------HHHTSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHChHHHH----hCCccccccccHHHHhhChHHHHHHHHHHHHHHH-------HHHhcCCHHHHHHHHHH
Confidence 5678888888 8899997 4554456655557789999999997776664322 23333333222233222
Q ss_pred HH---HHcCCCcHHHHHHhhCC------HHHHh-hcCCHHHHHHHHHHhcChhhh
Q 015059 356 QF---EQIGLTPEEVITKMMAN------PEIAL-GFQSPRVQAAIMECSQNPMNI 400 (414)
Q Consensus 356 qF---~q~GmtP~e~~skIm~D------PELla-AfQDPEVmaA~qDi~sNPaNi 400 (414)
.= ..+|++|+.. +++.+ .+.+. .+ +||+.+|...+...=+++
T Consensus 92 l~~~H~~~gV~p~~f--~~~~~~ll~~l~~~lg~~~-t~e~~~AW~~~~~~v~~~ 143 (151)
T 1q1f_A 92 LGRKHRAVGVRLSSF--STVGESLLYMLEKSLGPDF-TPATRTAWSRLYGAVVQA 143 (151)
T ss_dssp HHHHHHHHTCCTTHH--HHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHH--HHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHH
Confidence 21 4489999854 22221 12222 34 899999988887766554
No 10
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=73.11 E-value=1.4 Score=39.77 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHhh-cChhhhhhhccCCCcccCChHHHHHHhh-----ChHHHHHH
Q 015059 282 LEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQL 322 (414)
Q Consensus 282 ~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~-----NP~yr~QL 322 (414)
|+-|+ .+|.+|+|.== -..||+.+.-||+ ||++.++|
T Consensus 25 l~~L~~~~Pqf~qlRq~----vqqNPqlL~~lLqqig~~NPqL~qlI 67 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQV----VSGNPEALAPLLENISARYPQLREHI 67 (171)
T ss_dssp ---CCCCHHHHHHHHHH----HHTCGGGHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHhcCHHHHHHHHH----HHHCHHHHHHHHHHHHhhCHHHHHHH
Confidence 88888 89998877321 1368888888886 88888887
No 11
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=62.98 E-value=24 Score=29.23 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=65.8
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|+.|. |.|. .+|-+..+-|.+||++|.|-...++..+.- .++|.|++-.-.++-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~----~F~~-f~d~~~~~~l~~n~~~~~h~~~v~~al~~~-------v~~ld~l~~~l~~L~~ 90 (146)
T 1out_B 23 IGPLALARVLIVYPWTQR----YFGS-FGNVSTPAAIMGNPKVAAHGKVVCGALDKA-------VKNMGNILATYKSLSE 90 (146)
T ss_dssp HHHHHHHHHHHHSGGGGG----GCGG-GCCCSSHHHHHHCHHHHHHHHHHHHTHHHH-------HHTTTCHHHHTHHHHH
T ss_pred HHHHHHHHHhhcCHhHHH----HHHH-hCCCCcHHHhccCHHHHHHHHHHHHHHHHH-------HHhHhhHHHHHHHHHH
Confidence 45777888885 799997 3443 244444577899999999999888776442 2333331000001111
Q ss_pred HHHH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++++ .+.+..-=+||+.+|...+...=++
T Consensus 91 ~H~~k~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 1out_B 91 THANKLFVDPDNF--RVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVA 139 (146)
T ss_dssp HHHHTTCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHhHhcCCCHHHH--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 1134 89999854 33332 2333323479999999888776655
No 12
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=60.90 E-value=29 Score=28.11 Aligned_cols=103 Identities=10% Similarity=0.248 Sum_probs=60.3
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ +|-. -+.+ +||++|.|-...+...+.. .++|.|.+-.-.++-+
T Consensus 24 ~g~~~y~rlF~~~P~~~~~-F~~~--d~~~--------~~~~~~~h~~~v~~al~~~-------v~~ld~l~~~l~~L~~ 85 (141)
T 2w72_C 24 YGAEAYERMFLSFPTTKTY-FPHF--DLSH--------GSAQVKGQGKKVADALTNA-------VAHVDDMPNALSALSD 85 (141)
T ss_dssp HHHHHHHHHHHHCGGGGGG-CTTS--CCST--------TCHHHHHHHHHHHHHHHHH-------HHTTTSHHHHTHHHHH
T ss_pred HHHHHHHHHHHHChhHHHH-HHhC--CCCC--------CCHHHHHHHHHHHHHHHHH-------HHhHhhhHHHHHHHHH
Confidence 5678889999 88999973 3333 3332 8999999998888776442 2233221100012222
Q ss_pred HHHH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 86 ~H~~~~gV~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~ 134 (141)
T 2w72_C 86 LHAHKLRVDPVNF--KLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVST 134 (141)
T ss_dssp HHHHTTCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HhHHhcCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 2245 99999853 222221 112211378888888887766555
No 13
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=60.55 E-value=32 Score=28.36 Aligned_cols=105 Identities=10% Similarity=0.173 Sum_probs=64.8
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|+.|.+ .|. .+|-+..+-|.+||++|.|-...++..+.- .++|.| + .+.-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~~~~~l~~s~~~~~h~~~v~~al~~~-------v~~ld~--l--~~~l~ 86 (146)
T 1v4x_B 23 IGPKALARCLIVYPWTQRY----FGA-YGDLSTPDAIKGNAKIAAHGVKVLHGLDRA-------VKNMDN--I--NEAYS 86 (146)
T ss_dssp HHHHHHHHHHHHSGGGGGG----GTT-SCCCSSHHHHHTCHHHHHHHHHHHHTTHHH-------HHCTTC--H--HHHTH
T ss_pred HHHHHHHHHHHHCHhHHHH----HHh-hcCCCcHHHHhcCHHHHHHHHHHHHHHHHH-------HHhhhh--H--HHHHH
Confidence 45677888875 7999974 343 244444567889999999999988876442 233333 1 11112
Q ss_pred HH----HH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++++ .+.+..-=+|||.+|...+...=++
T Consensus 87 ~L~~~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 1v4x_B 87 ELSVLHSDKLHVDPDNF--RILGDCLTVVIAANLGDAFTVETQCAFQKFLAVVVF 139 (146)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhcCCCHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 22 34 89999853 23332 2233323479999999888776555
No 14
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=60.03 E-value=28 Score=28.73 Aligned_cols=105 Identities=12% Similarity=0.226 Sum_probs=65.2
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ .|. .+|-+..+-|.+||++|.|-...+...+.- .++|.| + .+.-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~~~~~l~~~~~~~~h~~~v~~al~~~-------v~~ld~--l--~~~l~ 86 (146)
T 3d1k_B 23 IGPKALSRCLVVYPWTQRY----FSG-FGNLYNAEGIMSNANVAAHGIKVLHGLDRG-------MKNMDN--I--ADAYT 86 (146)
T ss_dssp HHHHHHHHHHHHSGGGGGG----GTT-SSCCSSHHHHHHCHHHHHHHHHHHHHTHHH-------HHTGGG--H--HHHTH
T ss_pred HHHHHHHHHHHHCHhHHHH----hcc-cccCCcHHHHhcCHHHHHHHHHHHHHHHHH-------HHhhhh--H--HHHHH
Confidence 45677888885 6999974 333 244444567789999999998888876542 333433 1 11111
Q ss_pred HH----HH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+ .+.+..-=+|||.+|...+...=++
T Consensus 87 ~L~~~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 3d1k_B 87 DLSTLHSEKLHVDPDNF--KLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVS 139 (146)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 22 34 89999863 23322 2333323479999999888776555
No 15
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=59.91 E-value=49 Score=27.33 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=67.0
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|. |.|. .+|-.+.+-|.+||++|.|-...++..+. ..++|.|.+ + .-+
T Consensus 24 ~g~~~~~rlF~~~P~~k~----~F~~-~~~~~~~~~l~~~~~~~~h~~~v~~al~~-------~v~~ld~~~---~-~l~ 87 (151)
T 1a6m_A 24 HGQDILIRLFKSHPETLE----KFDR-FKHLKTEAEMKASEDLKKHGVTVLTALGA-------ILKKKGHHE---A-ELK 87 (151)
T ss_dssp HHHHHHHHHHHHCHHHHT----TCTT-TTTCCSHHHHHTCHHHHHHHHHHHHHHHH-------HHTTTTCCH---H-HHH
T ss_pred HHHHHHHHHHHHChhHHH----HhHh-hcCCCcHHHhcCCHHHHHHHHHHHHHHHH-------HHHccCCHH---H-HHH
Confidence 56788888885 799996 4554 24554577889999999998888877544 234444422 3 223
Q ss_pred HH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+. +.+..-=+|||.+|...+...=++
T Consensus 88 ~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~v~~ 140 (151)
T 1a6m_A 88 PLAQSHATKHKIPIKYL--EFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRK 140 (151)
T ss_dssp HHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 33 34 89999853 223221 222212379999999888776665
No 16
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=59.53 E-value=20 Score=29.69 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=64.9
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|+.|. |.|. .+|-+..+-|.+||++|.|-...++..+.- .++|.|++-.-.++-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~----~F~~-f~~~~~~~~l~~~~~~~~h~~~v~~al~~~-------v~~lddl~~~l~~L~~ 90 (147)
T 3bom_B 23 IGPQALARLLIVSPWTQR----HFST-FGNLSTPAAIMGNPAVAKHGKTVMHGLDRA-------VQNLDDIKNTYVTLSV 90 (147)
T ss_dssp HHHHHHHHHHHHSGGGGG----GCGG-GSCCSSHHHHHTCHHHHHHHHHHHHHHHHH-------HHCTTCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHCccHHH----Hccc-cccCCcHHHHhcCHHHHHHHHHHHHHHHHH-------HHhHhhHHHHHHHHHH
Confidence 45778888885 699997 4443 345444677899999999998888776542 2333321000001111
Q ss_pred HHHH-cCCCcHHHHHHhhCC------HHHHhhc-CCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMAN------PEIALGF-QSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~D------PELlaAf-QDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+ .+.+..- =+||+.+|...+...=++
T Consensus 91 ~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~k~~~~va~ 140 (147)
T 3bom_B 91 MHSEKLFVDPDNF--RLLADCITVCVAAKLGPAVFSADTQEAFQKFLAVVVS 140 (147)
T ss_dssp HHHHTSCCCTHHH--HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHH--HHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHH
Confidence 1144 89999853 22222 2233222 578999998887766555
No 17
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=57.89 E-value=35 Score=28.23 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=65.7
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|+.|.+ .|. .+|-+..+-|.+||++|.|-...++..+.- .++|.| + ...-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~~~~~l~~~~~~~~h~~~v~~al~~~-------v~~ld~--l--~~~l~ 86 (146)
T 2aa1_B 23 VGPATLARCLVVYPWTQRY----FGK-FGNLYNAAAIAQNAMVSKHGTTILNGLDRA-------VKNMDD--I--TNTYA 86 (146)
T ss_dssp HHHHHHHHHHHHSGGGGGG----CGG-GCCCSSHHHHHHCHHHHHHHHHHHHTTHHH-------HHCTTC--H--HHHHH
T ss_pred HHHHHHHHHHHHCccHHHH----HHH-hcCCCcHHHHhcCHHHHHHHHHHHHHHHHH-------HHhHHh--H--HHHHH
Confidence 45778888885 7999973 343 244444567889999999999988876542 333333 1 11222
Q ss_pred HH----HH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++++ .+.+..-=+|||.+|...+...=++
T Consensus 87 ~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 2aa1_B 87 ELSVLHSEKLHVDPDNF--KLLADCLTIVVAARFGSAFTGEVQAAFQKFMAVVVS 139 (146)
T ss_dssp HHHHHHHHTSCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhcCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 22 34 89999854 23322 2333323479999999887776555
No 18
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=53.64 E-value=39 Score=27.75 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=59.1
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|. ++|.+ +|-+.-+ +||++|.|-...+...+. ..++|.| ...++.
T Consensus 32 ~g~~~~~rlF~~~P~~k~-~F~~~----~~~~~~~---~n~~~~~h~~~v~~al~~-------~v~~ldd----~~~l~~ 92 (146)
T 3g46_A 32 NGVALMTTLFADNQETIG-YFKRL----GDVSQGM---ANDKLRGHSITLMYALQN-------FIDQLDN----PDDLVC 92 (146)
T ss_dssp HHHHHHHHHHHHCGGGGG-GGGGG----CCGGGGG---GCHHHHHHHHHHHHHHHH-------HHHTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHCHHHHH-HHHHH----cCCCCcc---cCHHHHHHHHHHHHHHHH-------HHHHcCC----HHHHHH
Confidence 55778888887 699987 33322 3433323 899999998888876543 2333322 223554
Q ss_pred HHH-------HcCCCcHHHHHHhhCCHHHHhhc----CCHHHHHHHHHHhcC
Q 015059 356 QFE-------QIGLTPEEVITKMMANPEIALGF----QSPRVQAAIMECSQN 396 (414)
Q Consensus 356 qF~-------q~GmtP~e~~skIm~DPELlaAf----QDPEVmaA~qDi~sN 396 (414)
.++ .+|++|+.. +++.+- |+.++ =+|||.+|...+...
T Consensus 93 ~l~~l~~~H~~~~V~p~~f--~~~~~~-ll~~l~~~~~t~e~~~AW~k~~~~ 141 (146)
T 3g46_A 93 VVEKFAVNHITRKISAAEF--GKINGP-IKKVLASKNFGDKYANAWAKLVAV 141 (146)
T ss_dssp HHHHHHHHHHHTTCCHHHH--GGGHHH-HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHH--HHHHHH-HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 443 568999853 333322 22222 378999998876643
No 19
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=52.47 E-value=38 Score=28.03 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=58.1
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ +|.+ .-+.+.+ +||++|.|-...+...+. ..++|.| ...+..
T Consensus 33 ~g~~~~~rlF~~~P~~k~~-F~~~-~~~~~~~------~~~~~~~H~~~v~~al~~-------~v~~ldd----~~~L~~ 93 (150)
T 4hrt_A 33 TGLMLMSNLFTLRPDTKTY-FTRL-GDVQKGK------ANSKLRGHAITLTYALNN-------FVDSLDD----PSRLKC 93 (150)
T ss_dssp HHHHHHHHHHHHCGGGGGG-GGGG-CCGGGGG------GSHHHHHHHHHHHHHHHH-------HHHTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHH-HHHc-CCCCccc------cCHHHHHHHHHHHHHHHH-------HHHHCCC----HHHHHH
Confidence 55778888886 6999873 3332 1333332 899999998888776543 2333322 124444
Q ss_pred HHH-------HcCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcC
Q 015059 356 QFE-------QIGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQN 396 (414)
Q Consensus 356 qF~-------q~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sN 396 (414)
.++ .+|++|+.. +++.+- +.+..-=+|||.+|...+...
T Consensus 94 ~l~~l~~~H~~~gV~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~ 145 (150)
T 4hrt_A 94 VVEKFAVNHINRKISGDAF--GAIVEPMKETLKARMGNYYSDDVAGAWAALVGV 145 (150)
T ss_dssp HHHHHHHHHHHTTCCHHHH--GGGHHHHHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 443 349999843 333322 222212378898888876643
No 20
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=51.77 E-value=72 Score=26.35 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=68.7
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|. |.|. .+|-+..+-|.+||++|.|-..+++..+. ..++|.|.+ ..-.
T Consensus 24 ~g~~~~~rlF~~~P~~k~----~F~~-f~~~~~~~~l~~n~~~~~h~~~v~~al~~-------~v~~ldd~~----~~l~ 87 (153)
T 1lhs_A 24 HGQEVIIRLFQLHPETQE----RFAK-FKNLTTIDALKSSEEVKKHGTTVLTALGR-------ILKQKNNHE----QELK 87 (153)
T ss_dssp HHHHHHHHHHHHCHHHHT----TCGG-GTTCCSHHHHHTCHHHHHHHHHHHHHHHH-------HHTTTTCCH----HHHH
T ss_pred HHHHHHHHHHHHChhHHH----HhHh-hcCCCcHHHHcCCHHHHHHHHHHHHHHHH-------HHHhccCHH----HHHH
Confidence 56788888885 799996 4443 35555567788999999999888887654 234444422 3333
Q ss_pred HH----H-HcCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh--hhhhc
Q 015059 356 QF----E-QIGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN--IIKYQ 404 (414)
Q Consensus 356 qF----~-q~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN--isKYq 404 (414)
++ . .+|++|+.. +++.+. +.+..-=+|||.+|...+...=++ +.+|.
T Consensus 88 ~L~~~H~~k~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 147 (153)
T 1lhs_A 88 PLAESHATKHKIPVKYL--EFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRNDMASKYK 147 (153)
T ss_dssp HHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3 489999853 233222 122112378888888887766555 34554
No 21
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=51.46 E-value=48 Score=27.13 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ .|. .+|-+..+-+.+||++|.|-...++..+. ..++|.+ -.+.-.
T Consensus 23 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~~~~~l~~n~~~~~h~~~v~~~l~~-------~v~~ld~----l~~~l~ 86 (146)
T 2w72_B 23 VGGEAYGRLLVVYPWTQRF----FES-FGDLSTPDAVMGNPKVKAQGKKVLGAFSD-------GLAHLDN----LKGTFA 86 (146)
T ss_dssp HHHHHHHHHHHHSGGGGGG----CTT-SCCCSSHHHHHHCHHHHHHHHHHHHHHHH-------HTTCTTC----HHHHHH
T ss_pred HHHHHHHHHHHcChhHHHH----hHh-hcCCCcHHHHccCHHHHHHHHHHHHHHHH-------HHhCHHH----HHHHHH
Confidence 45677888875 7999974 332 24544567789999999999888886542 1223322 111212
Q ss_pred HH----H-HcCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----E-QIGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~-q~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ . .+|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 87 ~L~~~H~~k~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2w72_B 87 TLSELHCDKLHVDPENF--RLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVAN 139 (146)
T ss_dssp HHHHHHHHTSCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCChHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 22 4 489999854 333322 233322378999999888776555
No 22
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=50.69 E-value=59 Score=26.63 Aligned_cols=104 Identities=10% Similarity=0.160 Sum_probs=62.8
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+-.+.+..|+ .+|++|. |.| ++|-+ .+-|.+||++|.|-..+++..+. ..++|.+-| +...++.
T Consensus 23 ~g~~~~~rlF~~~P~~k~----~F~--~~~~~-~~~l~~~~~~~~h~~~v~~~l~~-------~v~~l~~~d-d~~~l~~ 87 (153)
T 2bk9_A 23 SGAAILTQFFNRFPSNLE----KFP--FRDVP-LEELSGNARFRAHAGRIIRVFDE-------SIQVLGQDG-DLEKLDE 87 (153)
T ss_dssp HHHHHHHHHHHHCGGGGG----GST--TTTSC-GGGGGGCHHHHHHHHHHHHHHHH-------HHHHTTSTT-HHHHHHH
T ss_pred hHHHHHHHHHHhChhHHh----cCc--CCCCC-HHHHhcCHHHHHHHHHHHHHHHH-------HHHHccccC-CHHHHHH
Confidence 4466777777 5799997 444 45543 34478999999998887776433 133331101 1234555
Q ss_pred HHH-------HcCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFE-------QIGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~-------q~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.+. ..|++|+.. +++.+ .+.+. | +|||.+|...+...=++
T Consensus 88 ~l~~L~~~H~~~gV~p~~f--~~~~~~Ll~~l~~~lg-~-t~e~~~AW~~~~~~v~~ 140 (153)
T 2bk9_A 88 IWTKIAVSHIPRTVSKESY--NQLKGVILDVLTAASS-L-DESQAATWAKLVDHVYA 140 (153)
T ss_dssp HHHHHHHHHGGGTCCHHHH--HHHHHHHHHHHHHHTT-C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHH
Confidence 553 348998753 12221 12233 3 89999999988877666
No 23
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=49.71 E-value=40 Score=27.30 Aligned_cols=105 Identities=10% Similarity=0.172 Sum_probs=63.2
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ .|. .+|-+ .+-|.+||++|.|-..+++..+. ..++|.| .++++.
T Consensus 25 ~g~~~~~rlF~~~P~~k~~----F~~-~~~~~-~~~l~~~~~~~~h~~~v~~~l~~-------~v~~ld~----~~~l~~ 87 (147)
T 1mba_A 25 NGLDFLVALFEKFPDSANF----FAD-FKGKS-VADIKASPKLRDVSSRIFTRLNE-------FVNNAAN----AGKMSA 87 (147)
T ss_dssp HHHHHHHHHHHHCGGGGGG----CTT-TTTCC-HHHHHTCTTHHHHHHHHHHHHHH-------HHHHTTC----HHHHHH
T ss_pred hHHHHHHHHHHhCchHHHh----hHh-hcCCC-HHHHhcCHHHHHHHHHHHHHHHH-------HHHHCCC----HHHHHH
Confidence 4567777777 57999974 332 34443 45588999999998887776433 1233322 345555
Q ss_pred HHH-------HcCCCcHHHHHHhhCCHHH--H---hhcCCHHHHHHHHHHhcChhhhh
Q 015059 356 QFE-------QIGLTPEEVITKMMANPEI--A---LGFQSPRVQAAIMECSQNPMNII 401 (414)
Q Consensus 356 qF~-------q~GmtP~e~~skIm~DPEL--l---aAfQDPEVmaA~qDi~sNPaNis 401 (414)
.+. .+|++|+.. +++.+-=| + .. =+|||.+|...+...=++..
T Consensus 88 ~l~~L~~~H~~~gV~p~~f--~~~~~~ll~~l~~~~~-~t~e~~~AW~~~~~~va~~l 142 (147)
T 1mba_A 88 MLSQFAKEHVGFGVGSAQF--ENVRSMFPGFVASVAA-PPAGADAAWTKLFGLIIDAL 142 (147)
T ss_dssp HHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHTTSC-CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHH--HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH
Confidence 554 458999853 22222111 1 22 26889999888776655543
No 24
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=49.10 E-value=38 Score=27.73 Aligned_cols=101 Identities=14% Similarity=0.246 Sum_probs=61.1
Q ss_pred cccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHH
Q 015059 276 FLTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVK 354 (414)
Q Consensus 276 ~~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~ 354 (414)
.+..+.+..|+ .+|++|.+ .|.. |-.. .||++|.|-...++..+.- .++|.|. .+.++
T Consensus 23 ~~g~~~~~rlF~~~P~~k~~----F~~~--~~~~-----~s~~~~~h~~~v~~al~~~-------v~~ld~l---~~~l~ 81 (141)
T 2r80_A 23 DLGGEALERLFITYPQTKTY----FPHF--DLSH-----GSAQIKGHGKKVAEALVEA-------ANHIDDI---AGALS 81 (141)
T ss_dssp HHHHHHHHHHHHHSGGGGGG----CTTS--CCST-----TCHHHHHHHHHHHHHHHHH-------HHTTTCH---HHHTH
T ss_pred HHHHHHHHHHHHHCchHHHH----hhhc--CCCC-----CCHHHHHHHHHHHHHHHHH-------HHhhhhH---HHHHH
Confidence 35678888888 68999973 3433 3222 9999999988888776541 3333331 12222
Q ss_pred HHH---HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 355 QQF---EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 355 ~qF---~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
+.= .. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 82 ~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 134 (141)
T 2r80_A 82 KLSDLHAQKLRVDPVNF--KLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGT 134 (141)
T ss_dssp HHHHHHHTTSCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 211 34 89999853 233322 222212378999998888776655
No 25
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=47.09 E-value=1.2e+02 Score=24.78 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=64.9
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+. | ...+|-+ .+-+.+||.++.|-..+++..+. ..++|.| ...+..
T Consensus 26 ~g~~~y~~lF~~~P~~k~~F-~---~~f~~~~-~~~l~~n~~~~~h~~~v~~~l~~-------~v~~ldd----~~~l~~ 89 (152)
T 3pt8_B 26 NGTNFYMDLFKAYPDTLTPF-K---SLFQNVS-FNQMTNHPTMKAQSLVFCNGMSS-------FVDNLDD----HEVLVV 89 (152)
T ss_dssp HHHHHHHHHHHHCGGGGGGG-T---TTTTTCC-HHHHTTCHHHHHHHHHHHHHHHH-------HHTTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHChhHHHHh-h---HHHcCCC-HHHHhcCHHHHHHHHHHHHHHHH-------HHHhCCC----HHHHHH
Confidence 55677888876 79998744 2 2145544 67788999999998888776543 1233322 224444
Q ss_pred HH-------HHcCCCcHHHHHHhhCCHHHHhhc-----CCHHHHHHHHHHhcChhhh
Q 015059 356 QF-------EQIGLTPEEVITKMMANPEIALGF-----QSPRVQAAIMECSQNPMNI 400 (414)
Q Consensus 356 qF-------~q~GmtP~e~~skIm~DPELlaAf-----QDPEVmaA~qDi~sNPaNi 400 (414)
.+ ..+|++|+.. +++.+-= +.++ =+||+.+|...+...=+++
T Consensus 90 ~l~~L~~~H~~~gV~p~~f--~~~~~~l-l~~l~~~lg~t~e~~~AW~~~~~~va~~ 143 (152)
T 3pt8_B 90 LLQKMAKLHFNRGIRIKEL--RDGYGTL-LRYLEDHCHVEGSTKNAWEDFIAYICRV 143 (152)
T ss_dssp HHHHHHHHHHTTTCCHHHH--HHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHH--HHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44 4578999843 2333221 1111 3799999988887766663
No 26
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=46.81 E-value=47 Score=32.42 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=62.1
Q ss_pred ccHHHHHHh---hcChhhhhhhccCCCcccCChHHHHHHhhChHHH-HHHHHHHHhccCCCCCchhhhhhcccCCCCcHH
Q 015059 277 LTVDTLEKL---MEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYR-KQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE 352 (414)
Q Consensus 277 ~~v~~~e~M---~~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr-~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spe 352 (414)
+..+++|.. ++||.+++ .|.-|++|-++- ++|++-|.+.|+-..|+..+.+.+.+.- +-
T Consensus 224 ~~~~a~e~~a~~~~d~~~~~--------------~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~~a~~~--~~- 286 (365)
T 3fse_A 224 YSLEALEKYTEKESDVEAKA--------------LFQEMITNKQRHIEYLETYLTRLGEKPSLSANIANQYAKVK--TA- 286 (365)
T ss_dssp HHHHHHHHHHHHCCCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC--------------
T ss_pred hHHHHHHHHHHhcCCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhHHHHHHH--HH-
Confidence 344444443 45677665 577788777664 5578889999999999998877666531 11
Q ss_pred HHHHHHHcCCCcHHHHHHhhCC--------HHHHhhcCCHHHHHHHHHHhcChhhhhhhcc
Q 015059 353 VKQQFEQIGLTPEEVITKMMAN--------PEIALGFQSPRVQAAIMECSQNPMNIIKYQN 405 (414)
Q Consensus 353 v~~qF~q~GmtP~e~~skIm~D--------PELlaAfQDPEVmaA~qDi~sNPaNisKYqn 405 (414)
| -+-+..+++...++| -+|..-+.||+=.+-|.+|.. +++||.+
T Consensus 287 ----~--~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~---~l~~~e~ 338 (365)
T 3fse_A 287 ----L--TGSDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYK---DLVKYEQ 338 (365)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH---HHHHHHH
T ss_pred ----h--cCCChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHHHH
Confidence 1 113333444444443 367788999999999999998 7777754
No 27
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=45.86 E-value=21 Score=34.43 Aligned_cols=52 Identities=12% Similarity=0.384 Sum_probs=43.7
Q ss_pred HHHHHHhhcChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhcc
Q 015059 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 330 (414)
Q Consensus 279 v~~~e~M~~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg 330 (414)
+.--..+-+||.-..++=-+||+.+||.+--.-+-.||..|+-|.++|.|.+
T Consensus 216 ircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 216 VRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp HHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4455678899999999999999999997655556669999999999998864
No 28
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=43.75 E-value=76 Score=26.27 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=60.9
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccC-ChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHH-
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMR-NPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEV- 353 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MR-Np~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev- 353 (414)
+..+.+..|++ +|+.|. |.|.. + |-+. +||++|.|-...++..+.- .++|.|.+ +.+
T Consensus 23 ~g~~~~~rlF~~~P~~k~----~F~~~-~~d~~~-----~~~~~~~h~~~v~~al~~~-------v~~ld~l~---~~l~ 82 (141)
T 1cg5_B 23 ITAKALERVFVVYPWTTR----LFSKL-QGLFSA-----NDIGVQQHADKVQRALGEA-------IDDLKKVE---INFQ 82 (141)
T ss_dssp HHHHHHHHHHHHSGGGGT----TCGGG-TTCCST-----TSHHHHHHHHHHHHHHHHH-------HHTTTSHH---HHTH
T ss_pred HHHHHHHHHHHHCccHHH----HHHhc-CCCCCC-----CCHHHHHHHHHHHHHHHHH-------HHhHHHHH---HHHH
Confidence 45677888885 799996 44442 2 3222 8999999999988876542 23333211 211
Q ss_pred --HHHHHHcCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 354 --KQQFEQIGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 354 --~~qF~q~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
-+.=..+|++|+.. +++++ .+.+..-=+|||.+|...+...=++
T Consensus 83 ~L~~~H~~~~V~p~~f--~~~g~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_B 83 NLSGKHQEIGVDTQNF--KLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAE 134 (141)
T ss_dssp HHHHHHHHHTCCTHHH--HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 11224489999854 22322 2333322479999999888776655
No 29
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=43.73 E-value=86 Score=25.59 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=64.2
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ .|. .+|-+..+-+.+||++|.|-...++..+. ..++|.|.+-.-.++-+
T Consensus 23 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~~~~~l~~n~~~~~h~~~v~~~l~~-------~v~~ld~l~~~l~~L~~ 90 (146)
T 2r80_B 23 CGAEALARLLIVYPWTQRF----FSS-FGNLSSATAISGNPNVKAHGKKVLTSFGD-------AVKNLDNIKGTFAQLSE 90 (146)
T ss_dssp HHHHHHHHHHHHSGGGGGG----GGG-GCCCSSHHHHHHCHHHHHHHHHHHHHHHH-------HHHTTTCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHChhHHHH----HHH-hcCCCcHHHHhcCHHHHHHHHHHHHHHHH-------HHHhHhhHHHHHHHHHH
Confidence 55777888885 7999974 333 24555556788999999998888877544 13333331100001212
Q ss_pred HHHH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+ .+.+..-=+|||.+|...+...=++
T Consensus 91 ~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2r80_B 91 LHCDKLHVDPENF--RLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAH 139 (146)
T ss_dssp HHHHTSCCCTHHH--HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 2244 89999853 22222 2223222378999998887765554
No 30
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=40.26 E-value=78 Score=25.99 Aligned_cols=100 Identities=10% Similarity=0.162 Sum_probs=60.2
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|+.|.+. |. .+|-+. +||++|.|-..+++..+.- .++|.| + .+.-+
T Consensus 25 ~g~~~~~rlF~~~P~~k~~F----~~-f~~~~~-----~~~~~~~h~~~v~~al~~~-------v~~ld~--l--~~~l~ 83 (143)
T 1out_A 25 VGAEALGRMLTAYPQTKTYF----SH-WADLSP-----GSGPVKKHGGIIMGAIGKA-------VGLMDD--L--VGGMS 83 (143)
T ss_dssp HHHHHHHHHHHHSGGGGGGG----TT-SSCCST-----TCHHHHHHHHHHHHHHHHH-------HHTTTC--H--HHHTH
T ss_pred HHHHHHHHHHHHCccHHHHH----HH-cCCCCC-----CCHHHHHHHHHHHHHHHHH-------HHhHHh--H--HHHHH
Confidence 55778888884 79999743 32 233332 9999999999988876442 233333 1 11111
Q ss_pred HH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++++- +.+..-=+|||.+|...+...=++
T Consensus 84 ~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 136 (143)
T 1out_A 84 ALSDLHAFKLRVDPGNF--KILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSA 136 (143)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 22 44 89999854 223221 222222479999999888776655
No 31
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=39.29 E-value=66 Score=26.44 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=59.7
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccC-ChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMR-NPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVK 354 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MR-Np~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~ 354 (414)
+..+.+..|++ +|+.|.+ .|. .+ |-+. +||++|.|-...++..+.- .++|.| + .+.-
T Consensus 25 ~g~~~~~rlF~~~P~~k~~----F~~-~~~~~~~-----~~~~~~~h~~~v~~al~~~-------v~~ld~--l--~~~l 83 (144)
T 1spg_A 25 LGAEALGRMLVSFPQTKIY----FSE-WGQDLGP-----QTPQVRNHGAVIMAAVGKA-------VKSIDN--L--VGGL 83 (144)
T ss_dssp HHHHHHHHHHHHCGGGGGG----GTT-SCSCSST-----TSHHHHHHHHHHHHHHHHH-------HHTTTC--H--HHHH
T ss_pred HHHHHHHHHHHHChHHHHH----HHH-cCCCCCC-----CCHHHHHHHHHHHHHHHHH-------HHhHHh--H--HHHH
Confidence 56788888884 7999973 332 12 3222 9999999988888775441 233333 1 1222
Q ss_pred HHH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 355 QQF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 355 ~qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
+++ .. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 84 ~~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 137 (144)
T 1spg_A 84 SQLSELHAFKLRVDPANF--KILAHNIILVISMYFPGDFTPEVHLSVDKFLACLAL 137 (144)
T ss_dssp HHHHHHHHTTSCCCTHHH--HHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHH
Confidence 222 33 89999853 222221 222222479999999887776555
No 32
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=38.90 E-value=62 Score=26.46 Aligned_cols=100 Identities=11% Similarity=0.209 Sum_probs=59.6
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ .|. .+|-+. +||++|.|-...++..+. ..++|.| + .+.-+
T Consensus 25 ~g~~~~~rlF~~~P~~~~~----F~~-~~~~~~-----~s~~~~~h~~~v~~al~~-------~v~~ld~--l--~~~l~ 83 (143)
T 3bom_A 25 IGEQALSRMLVVYPQTKAY----FSH-WASVAP-----GSAPVKKHGITIMNQIDD-------CVGHMDD--L--FGFLT 83 (143)
T ss_dssp HHHHHHHHHHHHSGGGGGG----CTT-SSCCST-----TCHHHHHHHHHHHHHHHH-------HHTTTTC--H--HHHHH
T ss_pred HHHHHHHHHHHHChHHHHH----HHH-cCCCCC-----CCHHHHHHHHHHHHHHHH-------HHHhHHh--H--HHHHH
Confidence 5577888888 67999973 343 234333 999999998888777543 1333333 1 11112
Q ss_pred HH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 84 ~L~~~H~~~~~V~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 136 (143)
T 3bom_A 84 KLSELHATKLRVDPTNF--KILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLAL 136 (143)
T ss_dssp HHHHHHHHTTCCCTTHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 22 44 89999854 233322 122212378999998887766555
No 33
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=38.27 E-value=1.4e+02 Score=24.15 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=58.8
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+. |.. |-+. +||++|.|-...++..+. ..++|.|.+-.-.++-+
T Consensus 24 ~g~~~~~rlF~~~P~~k~~F----~~~--~~~~-----~s~~~~~h~~~v~~al~~-------~v~~ld~l~~~l~~L~~ 85 (141)
T 1wmu_A 24 FGAEALERMFIVYPSTKTYF----PHF--DLHH-----DSEQIRHHGKKVVGALGD-------AVKHIDNLSATLSELSN 85 (141)
T ss_dssp HHHHHHHHHHHHSGGGGGGC----TTS--CCST-----TCHHHHHHHHHHHHHHHH-------HHHTTTSHHHHTHHHHH
T ss_pred HHHHHHHHHHHHCccHHHHH----HhC--CCCC-----CCHHHHHHHHHHHHHHHH-------HHHhHhhHHHHHHHHHH
Confidence 55677888875 79999743 332 2221 999999998888776544 13333331100011222
Q ss_pred HHHH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+ .+.+..-=+|||.+|...+...=++
T Consensus 86 ~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 134 (141)
T 1wmu_A 86 LHAYNLRVDPVNF--KLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSA 134 (141)
T ss_dssp HHHHTSCCCHHHH--HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 2244 89999843 22222 1223222378999998887776555
No 34
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=38.24 E-value=1.6e+02 Score=25.43 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=64.3
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ .|. .+|-+..+-|..||++|.|-..+++..+. ..++|.| ...++.
T Consensus 44 ~g~~~y~rlF~~~P~~k~~----F~~-f~d~~~~~~l~~n~~~~~h~~~v~~al~~-------~v~~Ldd----~~~l~~ 107 (193)
T 2dc3_A 44 VGVAILVRFFVNFPSAKQY----FSQ-FKHMEDPLEMERSPQLRKHACRVMGALNT-------VVENLHD----PDKVSS 107 (193)
T ss_dssp HHHHHHHHHHHHCGGGGGG----CTT-TTTCCCHHHHTTCHHHHHHHHHHHHHHHH-------HHHTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHH----HHh-ccCCCcHHHHhcCHHHHHHHHHHHHHHHH-------HHHhcCC----HHHHHH
Confidence 56778888884 7999974 333 24444456789999999998888877543 1233322 224444
Q ss_pred HH-------H-HcCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF-------E-QIGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF-------~-q~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.+ . .+|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 108 ~l~~L~~~H~~~~gV~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 163 (193)
T 2dc3_A 108 VLALVGKAHALKHKVEPVYF--KILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYS 163 (193)
T ss_dssp HHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 44 3 679999843 223221 222212368888888877665555
No 35
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=36.73 E-value=65 Score=26.20 Aligned_cols=100 Identities=10% Similarity=0.216 Sum_probs=59.7
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+. |. .+|-+. +||++|.|-...++..+. ..++|.| + .+.-+
T Consensus 24 ~g~~~~~rlF~~~P~~~~~F----~~-~~~~~~-----~s~~~~~h~~~v~~al~~-------~v~~ld~--l--~~~l~ 82 (142)
T 3d1k_A 24 IGNDALSRMIVVYPQTKIYF----SH-WPDVTP-----GSPNIKAHGKKVMGGIAL-------AVSKIDD--L--KTGLM 82 (142)
T ss_dssp HHHHHHHHHHHHSGGGGGGG----TT-SSCCST-----TCHHHHHHHHHHHHHHHH-------HHHTTTC--H--HHHHH
T ss_pred HHHHHHHHHHHHCccHHHHH----HH-hCCCCC-----CCHHHHHHHHHHHHHHHH-------HHHhHHH--H--HHHHH
Confidence 5577888888 689999743 32 233332 999999998888777543 1333333 1 12222
Q ss_pred HH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 83 ~L~~~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 3d1k_A 83 ELSEQHAYKLRVDPSNF--KILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVAL 135 (142)
T ss_dssp HHHHHHHHTSCCCGGGH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 22 34 89999853 233221 222212378999998888776555
No 36
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=35.18 E-value=1.1e+02 Score=25.32 Aligned_cols=101 Identities=8% Similarity=0.087 Sum_probs=63.0
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ .|. .+|-+ .+-|.+||++|.|-...++..+. ..++|.| .+++..
T Consensus 27 ~g~~~~~rlF~~~P~~k~~----F~~-f~~~~-~~~l~~~~~~~ah~~~v~~~l~~-------~v~~ldd----~~~l~~ 89 (152)
T 1x3k_A 27 TANTVFYNYLKKYPSNQDK----FET-LKGHP-LDEVKDTANFKLIAGRIFTIFDN-------CVKNVGN----DKGFQK 89 (152)
T ss_dssp HHHHHHHHHHHHSGGGGGG----STT-TTTSC-HHHHTTSHHHHHHHHHHHHHHHH-------HHHTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHChhHHHH----hHh-hcCCC-HHHHhcCHHHHHHHHHHHHHHHH-------HHHHCCC----HHHHHH
Confidence 5567788888 47999973 332 33432 34588999999999888876443 1233322 345555
Q ss_pred HHH-------HcCCCcHHH--HHH-hhCCHHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFE-------QIGLTPEEV--ITK-MMANPEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~-------q~GmtP~e~--~sk-Im~DPELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.++ ..|++|+.. +.+ |+. .+. +.. ||.+|...+...=++
T Consensus 90 ~l~~L~~~H~~~gV~p~~f~~~~~~Ll~-~~~---l~~-e~~~AW~k~~~~va~ 138 (152)
T 1x3k_A 90 VIADMSGPHVARPITHGSYNDLRGVIYD-SMH---LDS-THGAAWNKMMDNFFY 138 (152)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHH-HHC---CCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHh---cCc-hHHHHHHHHHHHHHH
Confidence 553 348999864 333 333 332 333 999998887776665
No 37
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=34.31 E-value=47 Score=27.64 Aligned_cols=104 Identities=7% Similarity=0.130 Sum_probs=59.2
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ .|+.|. ++|-. -+.+ .||++|.|-...+...+. ..++|.|.+-.-.++-+
T Consensus 24 ~g~~~~~rlF~~~P~~k~-~F~~~--~~~~--------~s~~~~aHg~~v~~al~~-------~v~~ld~l~~~l~~L~~ 85 (140)
T 3mkb_A 24 YGAEALARLFATHPGAKS-YFDYA--DYSA--------AGAKVQLHGGKVIRAVVS-------AAEHDDDLHAHLMVLAV 85 (140)
T ss_dssp HHHHHHHHHHHHCGGGGG-GCCCS--CCST--------TCHHHHHHHHHHHHHHHH-------HHTTTTTHHHHTHHHHH
T ss_pred HHHHHHHHHHHHChHHHh-hCccc--cCCC--------CCHHHHHHHHHHHHHHHH-------HHHChhhHHHHHHHHHH
Confidence 55677888876 499987 34433 2222 899999998888877553 12333321100002222
Q ss_pred HHH-HcCCCcHHH--HHHhhCC--HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFE-QIGLTPEEV--ITKMMAN--PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~-q~GmtP~e~--~skIm~D--PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=. .+|++|+.. +.+.|=. .+.+.. =+|||.+|...+...=++
T Consensus 86 ~H~~~l~V~p~~f~~l~~~Ll~~l~~~lg~-ft~ev~~AW~k~~~~va~ 133 (140)
T 3mkb_A 86 THGKKLLVDPSNFPMLSECILVTLATHLAE-FSPATHCAVDKLLSAISS 133 (140)
T ss_dssp HHHHTTCCCTTHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHHHHHHHHcCc-CCHHHHHHHHHHHHHHHH
Confidence 224 799999843 3332211 122322 379999999888766555
No 38
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=32.99 E-value=1.9e+02 Score=23.46 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=59.7
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+. |. .+|-+. +||++|.|-...++..+.-. ++|.| + .+.-+
T Consensus 24 ~g~~~~~rlF~~~P~~k~~F----~~-f~~~~~-----~n~~~~~h~~~v~~al~~~v-------~~ld~--l--~~~l~ 82 (141)
T 1cg5_A 24 WGADALARLFELHPQTKTYF----SK-FSGFEA-----CNEQVKKHGKRVMNALADAT-------HHLDN--L--HLHLE 82 (141)
T ss_dssp HHHHHHHHHHHHCGGGGGGG----TT-CSCCST-----TSHHHHHHHHHHHHHHHHHT-------TCTTS--H--HHHHH
T ss_pred HHHHHHHHHHHHCchHHHHh----HH-hCCCCC-----CCHhHHHHHHHHHHHHHHHH-------HhHHh--H--HHHHH
Confidence 55778888885 79999743 32 233332 89999999888888765422 22222 1 11112
Q ss_pred HH----HH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+ .+.+. -=+|||.+|...+...=++
T Consensus 83 ~L~~~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg-~~t~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_A 83 DLARKHGENLLVDPHNF--HLFADCIVVTLAVNLQ-AFTPVTHCAVDKFLELVAY 134 (141)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHH
Confidence 22 34 89999854 23332 22233 2478999998887766555
No 39
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=32.34 E-value=1.2e+02 Score=24.66 Aligned_cols=100 Identities=12% Similarity=0.211 Sum_probs=60.4
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+. |. .+|-+. +||+++.|-...++..+. ..++|.| + .+.-+
T Consensus 25 ~g~~~~~rlF~~~P~~k~~F----~~-~~d~~~-----~n~~~~~h~~~v~~al~~-------~v~~ld~--l--~~~l~ 83 (143)
T 1xq5_A 25 IGSDALSRMLAVYPQTKTYF----SH-WKDLSP-----GSAPVNKHGKTIMGGIVD-------AVASIDD--L--NAGLL 83 (143)
T ss_dssp HHHHHHHHHHHHCGGGGGGG----TT-CSCCST-----TSHHHHHHHHHHHHHHHH-------HHHTTTC--H--HHHTH
T ss_pred HHHHHHHHHHHHChHHHHHH----HH-cCCCCC-----CCHHHHHHHHHHHHHHHH-------HHHhHhh--H--HHHHH
Confidence 55778888884 79999743 32 133332 899999999888877544 1333333 1 12222
Q ss_pred HH----HH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ .. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 84 ~L~~~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 136 (143)
T 1xq5_A 84 ALSELHAFTLRVDPANF--KILSHCILVLLAVKFPKDFTPEVHISYDKFFSALAR 136 (143)
T ss_dssp HHHHHHHHTSCCCTHHH--HHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 23 34 99999853 233322 222222379999999888776655
No 40
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=31.89 E-value=1.2e+02 Score=24.36 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=58.7
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ .|.. |-+. +||++|.|-...++..+. ..++|.|.+-.-..+-+
T Consensus 25 ~g~~~y~rlF~~~P~~k~~----F~~~--~~~~-----~s~~~~~h~~~v~~~l~~-------~v~~ld~l~~~l~~L~~ 86 (142)
T 1jeb_A 25 IGTETLERLFLSHPQTKTY----FPHF--DLHP-----GSAQLRAHGSKVVAAVGD-------AVKSIDDIGGALSKLSE 86 (142)
T ss_dssp HHHHHHHHHHHHCGGGGGG----CTTS--CCST-----TCHHHHHHHHHHHHHHHH-------HHHTTTCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHCccHHHH----HHHC--CCCC-----CCHHHHHHHHHHHHHHHH-------HHHhHhhHHHHHHHHHH
Confidence 55777888875 7999974 3332 3222 899999998888777544 13333331100012222
Q ss_pred HHHH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 87 ~H~~k~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 1jeb_A 87 LHAYILRVDPVNF--KLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSS 135 (142)
T ss_dssp HHHHTSCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhccCCCHHHH--HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 2244 99999853 222221 112211378999998887776555
No 41
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.88 E-value=21 Score=30.09 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHhh---ChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHHHHHH
Q 015059 307 ASFKLMLQ---NPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQ 359 (414)
Q Consensus 307 ~tfk~ml~---NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~qF~q 359 (414)
.+|+++|+ .|.-|++++++=+..+. +-|+|.+-|+ ++.|.+.+.+
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~-------LfdkLn~~~L-s~~v~~~L~~ 67 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLAL-------LREQWAGGKL-SIPVKKRMAL 67 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH-------HHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHhcCCC-CHHHHHHHHH
Confidence 46777776 34445558888776555 6888888888 5545555443
No 42
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=31.07 E-value=43 Score=25.03 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=11.2
Q ss_pred hhhhhcccCCCCcHHHHHH
Q 015059 338 RVLDSLKNFDLNSAEVKQQ 356 (414)
Q Consensus 338 ~m~D~lk~~d~~spev~~q 356 (414)
+.+..||+ -++||-++|
T Consensus 5 qLl~tlks--p~sp~qqqq 21 (47)
T 1zoq_C 5 DLLRTLKS--PSSPQQQQQ 21 (47)
T ss_dssp HHHHTCCS--CCCHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHH
Confidence 34667777 458877766
No 43
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=30.73 E-value=38 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCchhhHHHHHHHHHHH---HHHHHHHHHHH
Q 015059 98 VGSPLFWVGVGVGLSALF---SFVASRLKQYA 126 (414)
Q Consensus 98 iGsPl~WiGvGVgLsalf---s~V~~~VK~ya 126 (414)
+|.-=--||++|.+.++| +||+..+++|=
T Consensus 10 ~s~~E~aigl~v~f~~~L~PagWVLshL~~YK 41 (46)
T 1v54_M 10 TSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYK 41 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 444445578888888887 79999999983
No 44
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=30.51 E-value=57 Score=26.71 Aligned_cols=74 Identities=15% Similarity=0.377 Sum_probs=49.1
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ .|. .+|-+..+-|.+||++|.|-...++..+.- .++|.| ..+++.
T Consensus 33 ~g~~~~~rlF~~~P~~k~~----F~~-~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~-------v~~ldd----~~~l~~ 96 (149)
T 2lhb_A 33 SGVDILVKFFTSTPAAQEF----FPK-FKGLTTADELKKSADVRWHAERIINAVDDA-------VASMDD----TEKMSM 96 (149)
T ss_dssp HHHHHHHHHHHHCGGGGGG----CGG-GTTCCSHHHHHTCHHHHHHHHHHHHHHHHH-------HHTTTC----HHHHHH
T ss_pred HHHHHHHHHHHHCHhHHHH----hhh-hcCCCCHHHHhCCHHHHHHHHHHHHHHHHH-------HHhcCC----HHHHHH
Confidence 5577788887 47999974 332 356666788899999999998888775441 233322 234555
Q ss_pred HH-------HH-cCCCcHH
Q 015059 356 QF-------EQ-IGLTPEE 366 (414)
Q Consensus 356 qF-------~q-~GmtP~e 366 (414)
.+ .. +|++|+.
T Consensus 97 ~l~~L~~~H~~~~~V~p~~ 115 (149)
T 2lhb_A 97 KLRNLSGKHAKSFQVDPEY 115 (149)
T ss_dssp HHHHHHHHHHHTSCCCGGG
T ss_pred HHHHHHHHHhhccCCCHHH
Confidence 44 34 7888884
No 45
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=30.36 E-value=42 Score=27.18 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCcH----HHHHHhh-CCHHHHhhcCC--------------HHHHHHHHHHhcChhhh
Q 015059 352 EVKQQFEQIGLTPE----EVITKMM-ANPEIALGFQS--------------PRVQAAIMECSQNPMNI 400 (414)
Q Consensus 352 ev~~qF~q~GmtP~----e~~skIm-~DPELlaAfQD--------------PEVmaA~qDi~sNPaNi 400 (414)
.|++.++.++=..+ +++..++ .+||+...|.. -.|+.+|..+..|..++
T Consensus 9 ~v~~sw~~v~~~~~~~g~~~y~rlF~~~P~~~~~F~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~l 76 (141)
T 2w72_C 9 NVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNAVAHVDDM 76 (141)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGCTTSCCSTTCHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHChhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 45666666543333 5677788 78999999985 58899999998877665
No 46
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=30.14 E-value=27 Score=35.88 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=49.5
Q ss_pred hhhhcccCCCCcHHHHHHHHHc---CCCcHHHHHHhhCCHHHHhhcCCH-HHHHHHHH-HhcChhhhhhhcc-Chhhhcc
Q 015059 339 VLDSLKNFDLNSAEVKQQFEQI---GLTPEEVITKMMANPEIALGFQSP-RVQAAIME-CSQNPMNIIKYQN-DKEVFSD 412 (414)
Q Consensus 339 m~D~lk~~d~~spev~~qF~q~---GmtP~e~~skIm~DPELlaAfQDP-EVmaA~qD-i~sNPaNisKYqn-nPKVmnl 412 (414)
+.+.+.+=.++..-.|+-|+.+ |-+|++++.+.+ +..+.|. |+.+++.+ |..||+.+.+|.+ .+|.|..
T Consensus 379 li~li~~g~Is~~~ak~vl~~~~~~~~~p~~IIe~~g-----l~qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~ 453 (482)
T 3al0_B 379 LFKLMDEGKISIKIAKEIFPEVFETGKMPSQIVEEKG-----LTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGF 453 (482)
T ss_dssp HHHHHTTTSSCTTHHHHSHHHHHHHCCCHHHHHHHHT-----CCCCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHH
T ss_pred HHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHHHhC-----CccCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHH
Confidence 5555566667777777777433 778888886642 4567787 89899988 6779999999994 6666554
No 47
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=28.91 E-value=1.7e+02 Score=26.59 Aligned_cols=100 Identities=10% Similarity=0.285 Sum_probs=59.3
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ +|.. -+.+ +||++|.|-+..+...+.- .++|.|.+ + .-+
T Consensus 24 ~g~~~y~rlf~~~P~~~~~-F~~~--~~~~--------~n~~~~~h~~~v~~~l~~~-------v~~ld~l~---~-~l~ 81 (283)
T 1c7c_A 24 YGAEALERMFLSFPTTKTY-FPHF--DLSH--------GSAQVKGHGKKVADALTNA-------VAHVDDMP---N-ALS 81 (283)
T ss_dssp HHHHHHHHHHHHCGGGGGG-CTTS--CCST--------TCHHHHHHHHHHHHHHHHH-------HHTGGGHH---H-HTH
T ss_pred HHHHHHHHHHHHChHHHHH-HHhC--CCCC--------CChHHHHHHHHHHHHHHHH-------HHcccCch---H-HHH
Confidence 55677888874 7999984 4443 3322 9999999998888775442 23333311 2 222
Q ss_pred HH----HH-cCCCcHHHHHHhhCC------HHHHhhcCCHHHHHHHHHHhcChhhh
Q 015059 356 QF----EQ-IGLTPEEVITKMMAN------PEIALGFQSPRVQAAIMECSQNPMNI 400 (414)
Q Consensus 356 qF----~q-~GmtP~e~~skIm~D------PELlaAfQDPEVmaA~qDi~sNPaNi 400 (414)
++ .. +|++|+.. +++.+ .|.+..-=+|||.+|...+...=+++
T Consensus 82 ~L~~~H~~~~gV~p~~f--~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~ia~~ 135 (283)
T 1c7c_A 82 ALSDLHAHKLRVDPVNF--KLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTV 135 (283)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 22 34 89999853 12221 22232223788888888877665553
No 48
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=27.61 E-value=30 Score=32.44 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.9
Q ss_pred hChHHHHHHHHHHHhccCCC
Q 015059 314 QNPEYRKQLQEMLDGMCESG 333 (414)
Q Consensus 314 ~NP~yr~QLe~ml~~mg~~~ 333 (414)
+||++|.|.++|+..+|.++
T Consensus 36 ~dp~fR~~F~~mc~siGVDP 55 (234)
T 3cuq_A 36 KNPEFRVQFQDMCATIGVDP 55 (234)
T ss_dssp HCHHHHHHHHHHHHHHTCCT
T ss_pred cCHHHHHHHHHHHHHcCCCc
Confidence 59999999999999999986
No 49
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=24.00 E-value=47 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCcHHH----HHHhh-CCHHHHhhcCC-------HHHHHHHHHHhc-Chhh
Q 015059 352 EVKQQFEQIGLTPEEV----ITKMM-ANPEIALGFQS-------PRVQAAIMECSQ-NPMN 399 (414)
Q Consensus 352 ev~~qF~q~GmtP~e~----~skIm-~DPELlaAfQD-------PEVmaA~qDi~s-NPaN 399 (414)
.|++.++.++ ..+++ +..++ .+|++...|.+ ..|+.+|..+.. |+..
T Consensus 8 ~v~~sw~~v~-~~~~~~~~fy~rlf~~~P~~k~~F~~~d~~~q~~~l~~~l~~~v~~~~~~ 67 (134)
T 1tu9_A 8 RVMQSYGRCC-ASTGFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGM 67 (134)
T ss_dssp HHHHHHHHHH-TSTTHHHHHHHHHHHTCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-ccchHHHHHHHHHHHcCHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHh
Confidence 6778888886 55444 55677 45999999975 567888888777 4444
No 50
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=23.85 E-value=35 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=21.0
Q ss_pred HHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHHHHHHcCCCcHHHHH
Q 015059 320 KQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVIT 369 (414)
Q Consensus 320 ~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~qF~q~GmtP~e~~s 369 (414)
++....|++.|..-+ ..|.+++ ...-.|+++.++++|++.+++|+
T Consensus 18 ~ka~~~L~~~gi~~~----~~di~~~-~~~~~eL~~~l~~~g~~~~~l~n 62 (120)
T 3gkx_A 18 QKAKKWLIENNIEYT----NRLIVDD-NPTVEELKAWIPLSGLPVKKFFN 62 (120)
T ss_dssp HHHHHHHHHTTCCCE----EEETTTT-CCCHHHHHHHHHHHTSCGGGGBC
T ss_pred HHHHHHHHHcCCceE----EEecccC-cCCHHHHHHHHHHcCCCHHHeEe
Confidence 344445555554331 1333333 12233666666666666554443
No 51
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=23.67 E-value=1.5e+02 Score=26.92 Aligned_cols=103 Identities=10% Similarity=0.242 Sum_probs=59.3
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|.+ +|-+ -+ +. +||+++.|-...++..+. ..++|.|.+-.-.++-+
T Consensus 166 ~g~~~~~rlF~~~P~~~~~-F~~f--d~---~~-----~n~~~~~h~~~v~~al~~-------~v~~lddl~~~l~~L~~ 227 (283)
T 1c7c_A 166 YGAEALERMFLSFPTTKTY-FPHF--DL---SH-----GSAQVKGHGKKVADALTN-------AVAHVDDMPNALSALSD 227 (283)
T ss_dssp HHHHHHHHHHHHCGGGGGG-CTTS--CC---ST-----TCHHHHHHHHHHHHHHHH-------HHHTTTSHHHHTHHHHH
T ss_pred HHHHHHHHHHHHChhHHHH-HHhC--CC---CC-----CChhHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHH
Confidence 56788888885 7999973 3332 23 22 999999998888777544 13333331100001111
Q ss_pred HHHH-cCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QFEQ-IGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF~q-~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
.=.. +|++|+.. +++.+- +.+..-=+|||.+|...+...=++
T Consensus 228 ~H~~~~~V~p~~f--~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 276 (283)
T 1c7c_A 228 LHAHKLRVDPVNF--KLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVST 276 (283)
T ss_dssp HHHHTTCCCTHHH--HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCHHHH--HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHH
Confidence 1134 89999853 222221 222222479999999888776555
No 52
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.33 E-value=34 Score=32.06 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.6
Q ss_pred hChHHHHHHHHHHHhccCCC
Q 015059 314 QNPEYRKQLQEMLDGMCESG 333 (414)
Q Consensus 314 ~NP~yr~QLe~ml~~mg~~~ 333 (414)
+||++|.|+++|+..+|.++
T Consensus 56 ~dp~fR~~F~~mc~siGVDP 75 (233)
T 1u5t_A 56 ASPEFRSKFMHMCSSIGIDP 75 (233)
T ss_dssp TCHHHHHHHHHHHHHHTCCH
T ss_pred cCHHHHHHHHHHHHHcCCCC
Confidence 59999999999999999975
No 53
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=21.83 E-value=37 Score=27.68 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=8.5
Q ss_pred HHHHHHHHcCC-CcHHH
Q 015059 352 EVKQQFEQIGL-TPEEV 367 (414)
Q Consensus 352 ev~~qF~q~Gm-tP~e~ 367 (414)
++++.++++|+ +..++
T Consensus 46 eL~~~l~~~g~~~~~~l 62 (121)
T 3rdw_A 46 KLKELLQQLGFSDARQL 62 (121)
T ss_dssp HHHHHHHHTTCSSGGGG
T ss_pred HHHHHHHhcCCcCHHHH
Confidence 55555555555 44433
No 54
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.51 E-value=66 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.6
Q ss_pred CCCchhhHHHHHHHHHHH---HHHHHHHHHH
Q 015059 98 VGSPLFWVGVGVGLSALF---SFVASRLKQY 125 (414)
Q Consensus 98 iGsPl~WiGvGVgLsalf---s~V~~~VK~y 125 (414)
+|.-=.-||++|...++| +||++.+++|
T Consensus 34 ~s~~E~aigltv~f~~~L~PagWVLshLe~Y 64 (70)
T 2y69_M 34 TSPKEQAIGLSVTFLSFLLPAGWVLYHLDNY 64 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 443344578888888887 7999999998
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.49 E-value=2.1e+02 Score=23.25 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=54.9
Q ss_pred cHHHHHHhhcCh--hhhhhhccCCCcccCChHHHHHHh---h--ChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCc
Q 015059 278 TVDTLEKLMEDP--QVQKMVYPSLPEEMRNPASFKLML---Q--NPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNS 350 (414)
Q Consensus 278 ~v~~~e~M~~dP--~~Qkm~ypyLPe~MRNp~tfk~ml---~--NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~s 350 (414)
.++.|.+.++|+ .++....-.|- .+.+++.+..|+ + |+.+|...-..|.+.+... .-+...+.|++- .
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~-~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~~---~ 94 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALG-KIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALKDE---D 94 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH-HHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCS---S
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH-HhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcCC---C
Confidence 366666666554 34433322222 133444444333 2 5677777777777766422 223344445442 3
Q ss_pred HHHHHH----HHHcCCC-cHHHHHHhhCCHH---------HHhhcCCHHHHHHHHHHhcCh
Q 015059 351 AEVKQQ----FEQIGLT-PEEVITKMMANPE---------IALGFQSPRVQAAIMECSQNP 397 (414)
Q Consensus 351 pev~~q----F~q~Gmt-P~e~~skIm~DPE---------LlaAfQDPEVmaA~qDi~sNP 397 (414)
++|+.. +.++|-. --+.+-+++.|++ .+..+.+++...++..+++++
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~ 155 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE 155 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC
Confidence 555544 3555543 2334555665543 223344444444555544444
No 56
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=21.11 E-value=2e+02 Score=23.52 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=61.8
Q ss_pred ccHHHHHHhhc-ChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLME-DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~~-dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|++ +|++|. |.|. .+|-+. .-|.+||++|.|-...++..+. ..++|.|.+ +.-+
T Consensus 21 ~g~~~~~rlF~~~P~~k~----~F~~-f~~~~~-~~l~~n~~~~~h~~~v~~al~~-------~v~~ldd~~----~~l~ 83 (147)
T 2nrl_A 21 IGGLVLTRLFKEHPETQK----LFPK-FAGIAQ-ADIAGNAAVSAHGATVLKKLGE-------LLKAKGSHA----AILK 83 (147)
T ss_dssp HHHHHHHHHHHHCHHHHT----TCTT-TTTCCG-GGTTTCHHHHHHHHHHHHHHHH-------HHHCSSCHH----HHHH
T ss_pred HHHHHHHHHHHHCHhHHH----Hhhh-hcCCCH-HHHcCCHHHHHHHHHHHHHHHH-------HHHhcCCHH----HHHH
Confidence 56788888874 799996 4443 233322 2378999999998888877544 133333321 2223
Q ss_pred HH----H-HcCCCcHHHHHHhhCCH------HHHhhcCCHHHHHHHHHHhcChhh
Q 015059 356 QF----E-QIGLTPEEVITKMMANP------EIALGFQSPRVQAAIMECSQNPMN 399 (414)
Q Consensus 356 qF----~-q~GmtP~e~~skIm~DP------ELlaAfQDPEVmaA~qDi~sNPaN 399 (414)
++ . .+|++|+.. +++.+- +. .. =+|||.+|...+...=++
T Consensus 84 ~L~~~H~~k~~V~p~~f--~~~~~~Ll~~l~~~-~~-~t~e~~~AW~~~~~~v~~ 134 (147)
T 2nrl_A 84 PLANSHATKHKIPINNF--KLISEVLVKVMQEK-AG-LDAGGQTALRNVMGIIIA 134 (147)
T ss_dssp HHHHHHHHTTCCCTHHH--HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHh-cc-CCHHHHHHHHHHHHHHHH
Confidence 33 3 489999853 222221 11 23 368999998887766655
No 57
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=20.50 E-value=83 Score=25.34 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059 277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ 355 (414)
Q Consensus 277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~ 355 (414)
+..+.+..|+ .+|++|.+ .|...+|-+ .+-+.+||++|.|-..+++..+.- .++| | +.++++.
T Consensus 24 ~g~~~~~rlF~~~P~~~~~----F~~~f~~~~-~~~l~~~~~~~~h~~~v~~~l~~~-------v~~l---d-~~~~l~~ 87 (142)
T 1b0b_A 24 AGPEFFMALFDAHDDVFAK----FSGLFSGAA-KGTVKNTPEMAAQAQSFKGLVSNW-------VDNL---D-NAGALEG 87 (142)
T ss_dssp HHHHHHHHHHHHCHHHHHT----TTTTTTTCC-GGGCTTSHHHHHHHHHHHHHHHHH-------HTTT---T-CHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHH----hHHhhCCCC-HHHHhcCHHHHHHHHHHHHHHHHH-------HHcc---C-CHHHHHH
Confidence 4567777777 57999974 443234433 233789999999998888775431 2222 2 2335555
Q ss_pred HH-------HHcCCCcHH
Q 015059 356 QF-------EQIGLTPEE 366 (414)
Q Consensus 356 qF-------~q~GmtP~e 366 (414)
.+ ..+|++|+.
T Consensus 88 ~l~~L~~~H~~~~V~p~~ 105 (142)
T 1b0b_A 88 QCKTFAANHKARGISAGQ 105 (142)
T ss_dssp HHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhhhcCCCCHHH
Confidence 55 346899874
No 58
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.22 E-value=58 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCCcHHHH
Q 015059 352 EVKQQFEQIGLTPEEVI 368 (414)
Q Consensus 352 ev~~qF~q~GmtP~e~~ 368 (414)
|+++.++++|++.+++|
T Consensus 44 eL~~~l~~~g~~~~~l~ 60 (120)
T 3fz4_A 44 LIRNWLENSGLELKKFF 60 (120)
T ss_dssp HHHHHHHHSCCCGGGGB
T ss_pred HHHHHHHHcCCCHHHHh
Confidence 55555566665555444
Done!