Query 015060
Match_columns 414
No_of_seqs 234 out of 754
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 3E-134 6E-139 985.5 27.9 360 1-363 1-366 (406)
2 PF00262 Calreticulin: Calreti 100.0 1E-117 3E-122 893.0 12.7 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 5E-105 1E-109 815.9 24.6 333 21-355 43-439 (558)
4 KOG0674 Calreticulin [Posttran 100.0 1.2E-39 2.5E-44 320.1 9.7 272 12-322 18-352 (406)
5 PF00262 Calreticulin: Calreti 100.0 7.2E-31 1.6E-35 265.3 0.5 192 92-288 115-338 (367)
6 KOG0675 Calnexin [Posttranslat 99.9 1.8E-22 3.9E-27 208.7 12.0 190 93-287 159-384 (558)
7 PLN03161 Probable xyloglucan e 53.3 1.4E+02 0.0029 30.6 10.5 25 165-190 141-165 (291)
8 KOG0163 Myosin class VI heavy 31.4 57 0.0012 37.7 4.2 18 351-368 935-952 (1259)
9 PF11025 GP40: Glycoprotein GP 30.9 1.3E+02 0.0027 28.0 5.6 71 100-191 5-75 (165)
10 PF10669 Phage_Gp23: Protein g 21.3 1.6E+02 0.0034 25.9 4.2 21 341-361 33-54 (121)
11 PF15240 Pro-rich: Proline-ric 20.2 56 0.0012 31.2 1.4 17 1-18 1-17 (179)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-134 Score=985.55 Aligned_cols=360 Identities=53% Similarity=1.041 Sum_probs=347.4
Q ss_pred ChhH--HHHHHHHhhhcceeeeeecccC--cCcccCeeecCcccCCCCCCceEeecCcccCCCC-Ccceeeccccchhhh
Q 015060 1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75 (414)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~F~E~F~--~~w~~rWv~S~~~k~~~~~G~~~~~~Gk~~g~~~-d~GL~~~~~ak~yaI 75 (414)
||.. +++||+++++++++|||.|.|. ++|+.|||+|++++. ..|.|.+++|+|+|++. |+||||+++||||||
T Consensus 1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~ 78 (406)
T KOG0674|consen 1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI 78 (406)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence 4554 4556667788889999999994 579999999999864 67999999999999988 999999999999999
Q ss_pred hcCCCCCccCCCceEEEEEEEeecccccCCceEEEeeeccccccccCCCCceeeccCCccCCCCCeEEEEEeeCCCcccc
Q 015060 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI 155 (414)
Q Consensus 76 Sak~~~f~~~~k~LVvQYeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~Il~~~~~~~~i 155 (414)
|++|++|+|++++|||||+|||+|.|+|||||||||+.++||.+|+|+|||.||||||+||++|+|||+||+|+|+||+|
T Consensus 79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli 158 (406)
T KOG0674|consen 79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI 158 (406)
T ss_pred ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCcceeEEEEeCCCCceEEEecceeccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 015060 156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235 (414)
Q Consensus 156 k~~~~~~~d~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~d~d~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KP~dWd 235 (414)
+++++|++|++|||||||||||+||+|+|||+.+.+|||++||+++||++|.||.++||+|||++++|+||+++||++|+
T Consensus 159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe 238 (406)
T KOG0674|consen 159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE 238 (406)
T ss_pred ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCCCcCcccccCcceEeE
Q 015060 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315 (414)
Q Consensus 236 ~~p~~Ipdp~a~kP~dWde~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~ 315 (414)
.|++||||+|+||+|||++|||+|+||||+||.|+|+|+|++|+||+|||.|.+|+|+||+|.+++++|.+.+|++|||
T Consensus 239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgl 317 (406)
T KOG0674|consen 239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGL 317 (406)
T ss_pred -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeee
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecCceeeeeEecCCHHHHHHHHHHhhcc-hhHHhhhhHHHHHhH
Q 015060 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAEKVR 363 (414)
Q Consensus 316 elW~~~~g~~fDNili~~d~~~a~~~~~~t~~~-~~~e~~~~~~~~~~~ 363 (414)
+||||+||+||||||||+|+++|++++++||+. +.+|++|++++++.+
T Consensus 318 dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~q 366 (406)
T KOG0674|consen 318 DLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQ 366 (406)
T ss_pred eEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhc
Confidence 999999999999999999999999999999998 999999998887544
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=1.4e-117 Score=892.99 Aligned_cols=312 Identities=52% Similarity=1.014 Sum_probs=236.3
Q ss_pred eeeecccCcC--cccCeeecCcccCC---CCCCceEeecCcccC-CCCCcceeeccccchhhhhcCC-CCCccCCCceEE
Q 015060 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWHG-DPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (414)
Q Consensus 19 ~~F~E~F~~~--w~~rWv~S~~~k~~---~~~G~~~~~~Gk~~g-~~~d~GL~~~~~ak~yaISak~-~~f~~~~k~LVv 91 (414)
|||+|+|+++ |.+|||+|++++++ .+.|+|.+++|++++ ..+|+||||+++|||||||++| +||++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6999999975 99999999999864 568999999997764 5669999999999999999999 589999999999
Q ss_pred EEEEEeecccccCCceEEEeeeccccc-cccCCCCceeeccCCccCCCCCeEEEEEeeCC-------CccccccCCcccC
Q 015060 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-------QNYPIKKELECET 163 (414)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~~~d~~-~f~~~TpY~IMFGPD~CG~~~~kvH~Il~~~~-------~~~~ik~~~~~~~ 163 (414)
|||||||++|+|||||||||+...++. +|+++|||+||||||+|| .+++|||||||++ .+|+.++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988887 999999999999999999 6677999997742 3566677778899
Q ss_pred CCcceeEEEEeCCCCceEEEecceeccCCCCCCCCC--CCCCcccCCCCCCCCCCCCCCcccCCCCCCCCCCCC------
Q 015060 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (414)
Q Consensus 164 d~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~d~d--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KP~dWd------ 235 (414)
|++||||||||+|||||+|+|||+++.+|||++||+ ++||++|+||+++||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCcCCCCC
Q 015060 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (414)
Q Consensus 236 --------------~~p~~Ipdp~a~kP~dWde~~dG~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (414)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 689999999999999999999999999999999 999999999999999
Q ss_pred CCCCCcccccCCCCCCCCcCcccccCcceEeEeEeeeecCceeeeeEe
Q 015060 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (414)
Q Consensus 284 YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~g~~fDNili 331 (414)
|+|+|+|++|+||+|++|.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-105 Score=815.90 Aligned_cols=333 Identities=41% Similarity=0.773 Sum_probs=295.9
Q ss_pred eecccCcC--cccCeeecCcccCCC------CCCceEeecCcccCCCCCcceeeccccchhhhhcCC-CCCccCCCceEE
Q 015060 21 FEERFDDG--WRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (414)
Q Consensus 21 F~E~F~~~--w~~rWv~S~~~k~~~------~~G~~~~~~Gk~~g~~~d~GL~~~~~ak~yaISak~-~~f~~~~k~LVv 91 (414)
|.++|+.+ |. |||.|.++|++. +.|.|.+..++=.+.++|+||++++.|||||||+.| .||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 56668753 45 899999987632 246666665554567889999999999999999999 789999999999
Q ss_pred EEEEEeecccccCCceEEEeee---ccccccccCCCCceeeccCCccCCCCCeEEEEEeeC-CCcccc-----ccCCc--
Q 015060 92 QYSIRFEQDIECGGGYIKLLSA---YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-GQNYPI-----KKELE-- 160 (414)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~---~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~Il~~~-~~~~~i-----k~~~~-- 160 (414)
||||+||.+++|||||||||+. ..++++|+++|||+||||||+|| .+++|||||||. +.++.+ +.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 9999999999999999999998 36788999999999999999999 999999999995 344433 45443
Q ss_pred --ccCCCcceeEEEEeCCCCceEEEecceeccCCCCCCCCC--CCCCcccCCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 015060 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (414)
Q Consensus 161 --~~~d~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~d~d--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KP~dWd~ 236 (414)
..+|++||||||||+|||||+|||||++|..|||++||. ++||++|+||++.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 568999999999999999999999999999999999994 8999999999999999999999999999999999984
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCCC
Q 015060 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWKP-------------------PKIPNPAYKGPWRPK 277 (414)
Q Consensus 237 --------------------~p~~Ipdp~a~kP~dWde~~dG~W~~-------------------p~I~NP~ykG~W~p~ 277 (414)
+|.+|+||+|+||+|||+++||+|+| |||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 68999999999999999999887655 566777888888888
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCcCcccccCcceEeEeEeeeecCceeeeeEecCCHHHHHHHHHHhhcc-hhHHhhh
Q 015060 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEG 355 (414)
Q Consensus 278 ~I~NP~YkG~W~~~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~g~~fDNili~~d~~~a~~~~~~t~~~-~~~e~~~ 355 (414)
||.||+|+|+|+||+|+||+|+++.+++.+.+|.+||+|||+|+++++|||||||+|++.|+.+++.||.. ..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 4444443
No 4
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=320.14 Aligned_cols=272 Identities=30% Similarity=0.482 Sum_probs=229.3
Q ss_pred hhhcceeeee--ecccCcCcccCeeec-CcccCCCCCCceEeecCcccC-----CCCCcceeeccccchhhhhcCCC---
Q 015060 12 FQISVSEIFF--EERFDDGWRSRWVIS-DWKRSEGKAGYFKHTAGKWHG-----DPDDKGIQTHTDARHYAISAKIP--- 80 (414)
Q Consensus 12 ~~~~~~~~~F--~E~F~~~w~~rWv~S-~~~k~~~~~G~~~~~~Gk~~g-----~~~d~GL~~~~~ak~yaISak~~--- 80 (414)
.+.++++.-| .+.|..+|.++-..| ..+++...+|+|...+.+..| ++..++| +|+|-.+|++.+
T Consensus 18 sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~----sa~F~~FsnK~kTLv 93 (406)
T KOG0674|consen 18 SAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI----SAKFKPFSNKGKTLV 93 (406)
T ss_pred hhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeee----ecccccccccCceEE
Confidence 3466788888 799999988554455 777777788999876655444 4567788 899999999986
Q ss_pred -CCccCC-------CceEE---------------EEEEEeecccccCCceEEEeeeccccccccCCCCceeeccCCccCC
Q 015060 81 -EFSNKN-------RTLVV---------------QYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGT 137 (414)
Q Consensus 81 -~f~~~~-------k~LVv---------------QYeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~CG~ 137 (414)
+|++++ +.+|. +|+|||+++| ||.+.-|++.+ + +|+| .++++-.-..|.
T Consensus 94 ~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDI-CG~~tkKVhvi-l---~ykg--~nhlikK~i~Ck- 165 (406)
T KOG0674|consen 94 IQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDI-CGFGTKKVHVI-L---NYKG--KNHLIKKDIRCK- 165 (406)
T ss_pred EEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcc-cCCCCceEEEE-E---eccc--ccchhccccccc-
Confidence 466663 55655 9999999999 99999999998 5 7777 689999999998
Q ss_pred CCCeEEE---EEeeCCCccccccCCc-ccCCCcceeEEEEeCCCCceEEEecceeccCCCCCCCCCCCCCcccCCCCCCC
Q 015060 138 QKKHLHV---ILSYQGQNYPIKKELE-CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKK 213 (414)
Q Consensus 138 ~~~kvH~---Il~~~~~~~~ik~~~~-~~~d~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~d~d~~pp~~I~Dp~~~K 213 (414)
.+..+|| ||| ++.+|.++.+.. ++++.+...|.|+....- ...+.+.++||+. ...|+||+|+|
T Consensus 166 ~D~~tHlYTlIlR-Pd~TYeVkIDn~~~esGsle~DWdll~~KKi---------kdP~a~KPedWDe--r~~I~DpeD~K 233 (406)
T KOG0674|consen 166 DDELTHLYTLILR-PDATYEVKIDNQQVESGSLEDDWDLLPPKKI---------KDPDAKKPEDWDE--REYIPDPEDKK 233 (406)
T ss_pred cCCcceeEEEEec-CCCeeEEEEcccccccCcccccccccccccc---------CCccccCcccchh--hccCCCccccC
Confidence 7777777 888 889999999874 689999999998765421 2456779999997 58899999999
Q ss_pred CCCCCCCcccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 015060 214 PADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGK 287 (414)
Q Consensus 214 P~DWdd~~~I~Dp~~~KP~dWd~------~p~~Ipdp~a~kP~dWde~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~ 287 (414)
|+||+-+++||||+|+||+|||+ +++|||+|+++ |+|+|..|.||+|||.|.+|+|.||.|...
T Consensus 234 p~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi~np~yKg~w~hp~i~npey~~d 303 (406)
T KOG0674|consen 234 PQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQIKNPAYKGKWIHPEIDNPEYPDD 303 (406)
T ss_pred ccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccccCccccceeeccccCCCcCCCC
Confidence 99999999999999999999997 59999999999 999999999999999999999999999876
Q ss_pred ----------------Cc---ccccCCCCCCCCcCcccccCcceEeEeEeeeec
Q 015060 288 ----------------WK---IPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKA 322 (414)
Q Consensus 288 ----------------W~---~~~I~NP~y~~d~~~~~~~~i~~iG~elW~~~~ 322 (414)
|+ ..+++|-..++|+++ ...+|-|+|...+
T Consensus 304 ~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~ey-----A~k~~~eTwg~~k 352 (406)
T KOG0674|consen 304 PELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEY-----AEKFANETWGKTK 352 (406)
T ss_pred cceeeecccceeeeeEEEeecceeecceEecCCHHH-----HHHHHHhhhcccc
Confidence 76 689999999999987 5677889998553
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.96 E-value=7.2e-31 Score=265.29 Aligned_cols=192 Identities=34% Similarity=0.615 Sum_probs=94.2
Q ss_pred EEEEEeecccccCCceEEEeeecccccc-ccC-CCCceeeccCCccCCCCCeEEE---EEeeCCCccccccCCc-ccCCC
Q 015060 92 QYSIRFEQDIECGGGYIKLLSAYVNQKK-FGG-DAPYSLMFGPDICGTQKKHLHV---ILSYQGQNYPIKKELE-CETDK 165 (414)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~~~d~~~-f~~-~TpY~IMFGPD~CG~~~~kvH~---Il~~~~~~~~ik~~~~-~~~d~ 165 (414)
.|+|||++++ ||..+- +|-+ +.-++ .++ ...+++..-|-.|. .+..+|| ||+ .+.+|+|+.+.. ..++.
T Consensus 115 pY~IMFGPD~-CG~~~k-vHfI-~~~~nP~~~~~~e~~l~~~p~~~~-~D~~tHlYTLii~-~dntyeI~IDg~~~~~G~ 189 (367)
T PF00262_consen 115 PYSIMFGPDK-CGSSNK-VHFI-FRHKNPITGEIEEKHLKKPPISCF-TDKLTHLYTLIIR-PDNTYEIRIDGEVVKSGS 189 (367)
T ss_dssp -ESEEEEEEE-ESTTEE-EEEE-EEEE-TTTEETTEEEE-SSSSB-H-HSSSEEEEEEEEE-TTTEEEEEETTEEEEEEE
T ss_pred CceEEeCCcc-CCCCce-EEEE-EEecCCCCCcccceecccCCcccc-cCCCcceEEEEEc-CCCeEEEEECCEEeeccc
Confidence 7999999999 999777 7766 32111 111 12467777888896 7788998 788 666999988873 55666
Q ss_pred cceeEE--EEe-----CCCCc-eEEEeccee--ccCCCCCCCCCCCCCcccCCCCCCCCCCCCC--CcccCCCCCCCCCC
Q 015060 166 LTHFYT--FIL-----RPDAS-YSILIDNRE--RDSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEG 233 (414)
Q Consensus 166 ltHlYT--LIl-----~pd~t-yeI~ID~~~--~~~Gsl~~d~d~~pp~~I~Dp~~~KP~DWdd--~~~I~Dp~~~KP~d 233 (414)
|...+. |+. .|+.. =+=.+|-+. ......++||+...|.+|+||++.||++|++ +++|+||+|+||+|
T Consensus 190 L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~d 269 (367)
T PF00262_consen 190 LLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPED 269 (367)
T ss_dssp HHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT
T ss_pred cccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCC
Confidence 666566 322 12110 000011110 1233344444444444555555555555544 68999999999999
Q ss_pred CCC------CCCCCCCCCCCCCC--CC------CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 015060 234 YDS------IPKEIPDPKAKKPD--NW------DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKW 288 (414)
Q Consensus 234 Wd~------~p~~Ipdp~a~kP~--dW------de~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W 288 (414)
||+ ++++|+||.|..|- -| |.+..|+|+||||+||+|+|+|+|++|+||+|...=
T Consensus 270 Wdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~ 338 (367)
T PF00262_consen 270 WDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDP 338 (367)
T ss_dssp --CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--SST
T ss_pred CCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCccccccccccccCCCcccCCC
Confidence 997 58999999777621 12 457779999999999999999999999999999873
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=208.68 Aligned_cols=190 Identities=28% Similarity=0.489 Sum_probs=121.6
Q ss_pred EEEEeecccccCCceEEEeeeccccccccCC-CCceeeccCCc--cCCCCCeEEE---EEeeCCCccccccCCc-ccCCC
Q 015060 93 YSIRFEQDIECGGGYIKLLSAYVNQKKFGGD-APYSLMFGPDI--CGTQKKHLHV---ILSYQGQNYPIKKELE-CETDK 165 (414)
Q Consensus 93 YeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~-TpY~IMFGPD~--CG~~~~kvH~---Il~~~~~~~~ik~~~~-~~~d~ 165 (414)
|++||+.+- || +..|++-+-..-.-.+|. +-++.-+=|-. -.+.++++|+ |++ ++++++|..+.. +..+
T Consensus 159 y~ImFGPDK-CG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~-pd~sfeI~vDg~vv~~G- 234 (558)
T KOG0675|consen 159 YTIMFGPDK-CG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLK-PDNTFEIRVDGKVVYKG- 234 (558)
T ss_pred eEEEeCccc-cC-CcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEec-CCCeEEEEecCcEEEec-
Confidence 999999998 99 566665551111112222 12233322221 2335667777 666 567777765532 1211
Q ss_pred cceeEEEEe---C------CCC-ceEEEecc--eeccCCCCCCCCCCCCCcccCCCCCCCCCCCCC--CcccCCCCCCCC
Q 015060 166 LTHFYTFIL---R------PDA-SYSILIDN--RERDSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKP 231 (414)
Q Consensus 166 ltHlYTLIl---~------pd~-tyeI~ID~--~~~~~Gsl~~d~d~~pp~~I~Dp~~~KP~DWdd--~~~I~Dp~~~KP 231 (414)
++|+.++- . |++ .++=+-+- -...+...++|||...|.+|+|+.+.||++|.+ +++|+||+|+||
T Consensus 235 -~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KP 313 (558)
T KOG0675|consen 235 -SLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKP 313 (558)
T ss_pred -ccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCC
Confidence 22222221 1 111 11100000 013356678888888889999999999999988 569999999999
Q ss_pred CCCCC------CCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 015060 232 EGYDS------IPKEIPDPKAKKPDNW---------DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGK 287 (414)
Q Consensus 232 ~dWd~------~p~~Ipdp~a~kP~dW---------de~~dG~W~~p~I~NP~ykG~W~p~~I~NP~YkG~ 287 (414)
+|||+ ++++|-||.|++-..+ |-...|.|.+|||.||+|+|.|+|+.|+||+|...
T Consensus 314 edWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd 384 (558)
T KOG0675|consen 314 EDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFED 384 (558)
T ss_pred CCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccc
Confidence 99997 4666666666643222 45566999999999999999999999999999877
No 7
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=53.25 E-value=1.4e+02 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.9
Q ss_pred CcceeEEEEeCCCCceEEEecceecc
Q 015060 165 KLTHFYTFILRPDASYSILIDNRERD 190 (414)
Q Consensus 165 ~ltHlYTLIl~pd~tyeI~ID~~~~~ 190 (414)
.--|.|++.=.|+. -..+|||+.+.
T Consensus 141 ~dFHtYsI~Wtp~~-I~wyVDG~~iR 165 (291)
T PLN03161 141 ADFHNYTIHWNPSE-VVWYVDGTPIR 165 (291)
T ss_pred cCcEEEEEEEchhh-EEEEECCEEEE
Confidence 44699999888764 57789999886
No 8
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=31.38 E-value=57 Score=37.71 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=8.0
Q ss_pred HHhhhhHHHHHhHhHHHH
Q 015060 351 IEKEGFEEAEKVRKAREE 368 (414)
Q Consensus 351 ~e~~~~~~~~~~~~~~~~ 368 (414)
+|++..|++|++|+++++
T Consensus 935 ~ER~rrEaeek~rre~ee 952 (1259)
T KOG0163|consen 935 AERKRREAEEKRRREEEE 952 (1259)
T ss_pred HHHHhhhhhHHHHHHHHH
Confidence 444444444444444433
No 9
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=30.87 E-value=1.3e+02 Score=28.02 Aligned_cols=71 Identities=15% Similarity=0.341 Sum_probs=41.0
Q ss_pred ccccCCceEEEeeeccccccccCCCCceeeccCCccCCCCCeEEEEEeeCCCccccccCCcccCCCcceeEEEEeCCCCc
Q 015060 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179 (414)
Q Consensus 100 ~i~CGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~Il~~~~~~~~ik~~~~~~~d~ltHlYTLIl~pd~t 179 (414)
.-+||..|+--|....-...+.-. -|+|...|.+-. -...+++.++..+.+ ||- +.++|
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~~------------------t~PaPrYISGev~~V-tFe-ksd~T 63 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKDQ------------------TDPAPRYISGEVKSV-TFE-KSDST 63 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecC-CEEEEEccccCC------------------CCCCCceeecceEEE-EEe-ccCCe
Confidence 457999998877764222221111 266666666532 122334555555442 333 37899
Q ss_pred eEEEecceeccC
Q 015060 180 YSILIDNRERDS 191 (414)
Q Consensus 180 yeI~ID~~~~~~ 191 (414)
..|+|||+....
T Consensus 64 vkIkvd~kefst 75 (165)
T PF11025_consen 64 VKIKVDGKEFST 75 (165)
T ss_pred EEEEECCeEccc
Confidence 999999987654
No 10
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.29 E-value=1.6e+02 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHhhcc-hhHHhhhhHHHHH
Q 015060 341 VVEEVLSN-REIEKEGFEEAEK 361 (414)
Q Consensus 341 ~~~~t~~~-~~~e~~~~~~~~~ 361 (414)
++..-|-. +..-.+|.|+.+|
T Consensus 33 i~~~IW~~~r~~r~~MKEER~K 54 (121)
T PF10669_consen 33 ITKSIWHDSRQVRIRMKEERSK 54 (121)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 45566766 4444455554333
No 11
>PF15240 Pro-rich: Proline-rich
Probab=20.21 E-value=56 Score=31.20 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=9.1
Q ss_pred ChhHHHHHHHHhhhccee
Q 015060 1 MMLKLLVLFLFFQISVSE 18 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (414)
||+.||. ++||++++|.
T Consensus 1 MLlVLLS-vALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLS-VALLALSSAQ 17 (179)
T ss_pred ChhHHHH-HHHHHhhhcc
Confidence 6665554 4445565553
Done!