BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015062
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 34 WIKGLTKMATIFNGVRNVVGMSLRNELRGPK-----QNVKDWYRYMQLGAEAVHAANPEV 88
WI L +A + G VVG L NE P DW + AV + NP +
Sbjct: 137 WISDLQALAQRYKGNPTVVGFDLHNEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNL 196
Query: 89 LVILSGLN--------FDKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDG-QAWVDGN--P 137
L+ + G+ + +L V L +LV+ AH Y + G Q W P
Sbjct: 197 LIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDYATSVGPQTWFSDPTFP 256
Query: 138 NQVCGRVVDNVMRLSGFLLEQG-WPLFVSEFGADLR 172
N + G N G+L Q P+++ EFG L+
Sbjct: 257 NNMPGIWNKNW----GYLFNQNIAPVWLGEFGTTLQ 288
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 34 WIKGLTKMATIFNGVRNVVGMSLRNELRGPK-----QNVKDWYRYMQLGAEAVHAANPEV 88
WI L +A + G VVG L NE P DW + AV + NP +
Sbjct: 137 WISDLQALAQRYKGNPTVVGFDLHNEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNL 196
Query: 89 LVILSGLN--------FDKDLSFVRNQAVNLTFTGKLVFEAHWYGFT-DGQAWVDGN--P 137
L+ + G+ + +L V L +LV+ AH Y + Q W P
Sbjct: 197 LIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDYATSVYPQTWFSDPTFP 256
Query: 138 NQVCGRVVDNVMRLSGFLLEQG-WPLFVSEFGADLR 172
N + G N G+L Q P+++ EFG L+
Sbjct: 257 NNMPGIWNKNW----GYLFNQNIAPVWLGEFGTTLQ 288
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 40 KMATIFNGVRNVVGMSLRNE--LRGPKQNVKDWYRYMQLGAEAV---HAANPEVLVILSG 94
+++ +NG+ +V + NE + + + W + + EA+ A NP+ + +++G
Sbjct: 170 RVSERYNGINSVAFYEIFNEPTVFNGRLGIATWAEWKAINEEAITIIQAHNPKAIALVAG 229
Query: 95 LNFDKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGF 154
N+ DL + A N + + +H Y P +V N R GF
Sbjct: 230 FNWAYDL---KEAAANPIDRQNIAYVSHPY------------PQKVGAPYQANWERDFGF 274
Query: 155 LLEQGWPLFVSEFG 168
++ +P+F +E G
Sbjct: 275 XADK-YPVFATEIG 287
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 287 WSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTV 346
W + P SL+ F +Q K V I + ST ++ +D L NGT
Sbjct: 295 WGFRPR---SLRVKIFNIQVKEVTVQDSTTTIANNLTSTVQVFTDDDYQLPYVVGNGTEG 351
Query: 347 CLDVDSSN--TIVTNTCKCLSRDKTCDPASQ 375
CL T+ L+RD T +P +
Sbjct: 352 CLPAFPPQVFTLPQYGYATLNRDNTENPTER 382
>pdb|2R7A|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|B Chain B, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|C Chain C, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|D Chain D, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2RG7|A Chain A, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|B Chain B, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|C Chain C, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|D Chain D, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
Length = 256
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 65 QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQA 108
+NV +Y AE++ AANPEV+V+ S + D D++ +R+ A
Sbjct: 172 ENVATHQQYKSYSAESLIAANPEVIVVTSQM-VDGDINRLRSIA 214
>pdb|3PZT|A Chain A, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZT|B Chain B, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZU|A Chain A, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZU|B Chain B, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|A Chain A, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|B Chain B, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|C Chain C, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|D Chain D, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
Length = 327
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 34/174 (19%)
Query: 2 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 61
VI+D HI G N + N ++F +M++++ NV+ + NE
Sbjct: 121 VIIDWHILNDG----NPNQNKEKAKEFFK---------EMSSLYGNTPNVI-YEIANEPN 166
Query: 62 GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLTFTGKLVFEA 121
G +D Y + + +P+ ++I+ + +D V + A + +++
Sbjct: 167 GDVNWKRDIKPYAEEVISVIRKNDPDNIIIVGTGTWSQD---VNDAADDQLKDANVMYAL 223
Query: 122 HWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFG-ADLRGN 174
H+Y T GQ D + + L +G P+FV+E+G +D GN
Sbjct: 224 HFYAGTHGQFLRD----------------KANYALSKGAPIFVTEWGTSDASGN 261
>pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fusca
pdb|2MAN|A Chain A, Mannotriose Complex Of Thermomonospora Fusca
Beta-Mannanase
pdb|3MAN|A Chain A, Mannohexaose Complex Of Thermomonospora Fusca
Beta-mannanase
Length = 302
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 30/159 (18%)
Query: 32 DLWIKGLTKMATIFNGVRNVVGMSLRNELRG-PKQNVKDWYRYMQLGAEAVHAANPEVLV 90
D WI+ + ++ G + V +++ NE G V W + + AA E +
Sbjct: 105 DYWIE----LKSVLQGEEDYVLINIGNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTL 160
Query: 91 ILSGLNFDKD-LSFVRNQAVNLTF---TGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVD 146
++ N+ +D + +RN A + TG VF H YG V
Sbjct: 161 VVDAPNWGQDWTNTMRNNADQVYASDPTGNTVFSIHMYG------------------VYS 202
Query: 147 NVMRLSGFL---LEQGWPLFVSEFGADLRGNNVNDNRYL 182
++ +L + G PL + EFG D N +++ +
Sbjct: 203 QASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIM 241
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 26 DQYFNPDLWIKGLTKMATIFNGVRNVVG 53
D++ PD ++GL K+ T F+GV + G
Sbjct: 210 DEHMRPDTTMEGLAKLKTAFDGVGEMGG 237
>pdb|1PQV|S Chain S, Rna Polymerase Ii-Tfiis Complex
Length = 309
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 262 ATGLCVQRKSFLDPLTLGPCTESEAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTD 321
A G ++R S D T G C E K +Y+ LQ + +P C
Sbjct: 256 AQGATIER-SVTDRFTCGKCKEK-------------KVSYYQLQTRSADEPLTTFCTCEA 301
Query: 322 CGSTWE 327
CG+ W+
Sbjct: 302 CGNRWK 307
>pdb|1Y1V|S Chain S, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|S Chain S, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
Length = 179
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 262 ATGLCVQRKSFLDPLTLGPCTESEAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTD 321
A G ++R S D T G C E K +Y+ LQ + +P C
Sbjct: 126 AQGATIER-SVTDRFTCGKCKEK-------------KVSYYQLQTRSADEPLTTFCTCEA 171
Query: 322 CGSTWE 327
CG+ W+
Sbjct: 172 CGNRWK 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,553,230
Number of Sequences: 62578
Number of extensions: 583730
Number of successful extensions: 1251
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 19
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)