Query 015062
Match_columns 414
No_of_seqs 245 out of 925
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 99.9 7.9E-26 1.7E-30 218.1 14.5 194 1-203 77-279 (281)
2 COG2730 BglC Endoglucanase [Ca 99.6 5.6E-15 1.2E-19 152.4 11.1 172 1-172 131-326 (407)
3 smart00458 RICIN Ricin-type be 98.7 6.5E-08 1.4E-12 81.0 8.2 95 260-361 3-106 (117)
4 cd00161 RICIN Ricin-type beta- 98.6 3.5E-07 7.6E-12 76.2 10.1 95 262-362 8-115 (124)
5 smart00633 Glyco_10 Glycosyl h 98.5 8E-06 1.7E-10 79.2 17.6 171 31-226 56-246 (254)
6 PF00652 Ricin_B_lectin: Ricin 98.3 1.1E-06 2.3E-11 74.1 6.2 93 263-361 11-116 (124)
7 PRK10150 beta-D-glucuronidase; 98.2 0.0001 2.2E-09 80.1 18.7 179 31-227 389-581 (604)
8 PF12876 Cellulase-like: Sugar 98.1 9.7E-06 2.1E-10 66.1 6.3 78 41-124 1-88 (88)
9 PF02836 Glyco_hydro_2_C: Glyc 97.7 0.00061 1.3E-08 67.4 14.0 57 31-95 103-159 (298)
10 PF07745 Glyco_hydro_53: Glyco 97.6 0.00041 8.8E-09 70.1 10.4 140 41-201 115-296 (332)
11 PF14200 RicinB_lectin_2: Rici 97.5 0.0004 8.6E-09 58.0 8.2 76 284-361 2-93 (105)
12 smart00458 RICIN Ricin-type be 97.5 0.00023 5E-09 59.3 6.0 71 257-328 40-116 (117)
13 cd00161 RICIN Ricin-type beta- 97.4 0.00039 8.4E-09 57.6 6.3 65 263-328 51-124 (124)
14 PF00331 Glyco_hydro_10: Glyco 97.4 0.0033 7.1E-08 63.2 13.6 173 31-226 105-308 (320)
15 PF11790 Glyco_hydro_cc: Glyco 97.3 0.0043 9.4E-08 59.8 13.3 143 23-193 45-202 (239)
16 PF00652 Ricin_B_lectin: Ricin 97.3 0.00052 1.1E-08 57.5 5.6 70 256-326 47-124 (124)
17 PF14200 RicinB_lectin_2: Rici 97.2 0.00075 1.6E-08 56.3 5.7 75 254-329 15-105 (105)
18 COG3934 Endo-beta-mannanase [C 97.0 0.0036 7.9E-08 65.2 9.7 187 23-229 112-310 (587)
19 PF01229 Glyco_hydro_39: Glyco 96.7 0.0071 1.5E-07 64.2 9.5 201 29-242 129-361 (486)
20 COG3867 Arabinogalactan endo-1 96.1 0.18 4E-06 50.1 14.5 143 39-201 159-342 (403)
21 PRK09525 lacZ beta-D-galactosi 95.6 0.13 2.9E-06 59.5 13.1 57 31-95 434-490 (1027)
22 KOG3736 Polypeptide N-acetylga 95.3 0.056 1.2E-06 58.4 7.9 103 260-377 460-571 (578)
23 PRK10340 ebgA cryptic beta-D-g 95.0 0.3 6.5E-06 56.7 13.3 55 32-94 422-476 (1021)
24 PF14587 Glyco_hydr_30_2: O-Gl 94.1 1 2.2E-05 46.5 13.3 169 31-210 153-365 (384)
25 PF03198 Glyco_hydro_72: Gluca 92.5 1.1 2.4E-05 45.0 10.4 152 1-173 94-252 (314)
26 PF13204 DUF4038: Protein of u 92.0 0.51 1.1E-05 46.8 7.5 65 27-96 124-188 (289)
27 KOG3738 Predicted polypeptide 91.6 0.13 2.7E-06 53.0 2.7 92 264-362 441-543 (559)
28 COG5309 Exo-beta-1,3-glucanase 90.7 5.2 0.00011 39.5 12.6 146 40-198 120-278 (305)
29 KOG3736 Polypeptide N-acetylga 87.3 0.87 1.9E-05 49.4 5.2 64 265-330 507-574 (578)
30 COG3693 XynA Beta-1,4-xylanase 85.3 2.8 6E-05 42.3 7.1 59 32-92 125-191 (345)
31 TIGR03356 BGL beta-galactosida 84.6 3.9 8.4E-05 42.9 8.3 82 2-90 110-212 (427)
32 PF02449 Glyco_hydro_42: Beta- 84.3 1.3 2.9E-05 45.2 4.6 32 31-62 109-140 (374)
33 KOG2233 Alpha-N-acetylglucosam 81.8 4 8.6E-05 43.3 6.9 86 11-100 203-288 (666)
34 PF03662 Glyco_hydro_79n: Glyc 80.7 1.5 3.2E-05 44.4 3.3 133 50-186 165-313 (319)
35 PF03498 CDtoxinA: Cytolethal 79.1 2.9 6.2E-05 37.7 4.3 74 298-379 59-142 (150)
36 PF05089 NAGLU: Alpha-N-acetyl 77.6 5.2 0.00011 40.6 6.1 66 27-94 153-218 (333)
37 PF12891 Glyco_hydro_44: Glyco 77.6 7.4 0.00016 37.7 6.8 64 31-98 106-182 (239)
38 cd00257 Fascin Fascin-like dom 75.4 15 0.00033 30.7 7.6 61 295-358 4-66 (119)
39 cd00257 Fascin Fascin-like dom 71.4 49 0.0011 27.6 9.8 71 285-359 34-107 (119)
40 PF02156 Glyco_hydro_26: Glyco 67.0 57 0.0012 32.9 10.6 135 38-203 42-205 (311)
41 COG5520 O-Glycosyl hydrolase [ 66.1 1.2E+02 0.0025 31.5 12.4 151 32-205 149-313 (433)
42 PF02055 Glyco_hydro_30: O-Gly 65.7 77 0.0017 34.1 11.9 152 31-201 203-379 (496)
43 cd02068 radical_SAM_B12_BD B12 64.8 16 0.00036 31.0 5.6 42 47-98 38-79 (127)
44 PF02310 B12-binding: B12 bind 63.1 14 0.0003 30.8 4.7 43 47-98 50-92 (121)
45 KOG3737 Predicted polypeptide 62.7 7.6 0.00017 40.3 3.4 97 256-361 482-586 (603)
46 COG2240 PdxK Pyridoxal/pyridox 57.9 76 0.0017 31.6 9.4 68 24-100 48-117 (281)
47 TIGR01370 cysRS possible cyste 55.6 2.4E+02 0.0051 28.6 14.8 147 32-195 143-299 (315)
48 cd02067 B12-binding B12 bindin 47.7 35 0.00076 28.6 4.7 44 47-99 49-93 (119)
49 KOG3738 Predicted polypeptide 46.2 17 0.00038 37.9 2.9 69 261-330 480-555 (559)
50 PF06268 Fascin: Fascin domain 45.6 96 0.0021 25.8 7.0 37 321-359 22-59 (111)
51 PF00332 Glyco_hydro_17: Glyco 41.1 46 0.001 33.4 5.1 44 46-90 81-124 (310)
52 PF12697 Abhydrolase_6: Alpha/ 37.9 1E+02 0.0022 26.8 6.4 61 38-99 14-77 (228)
53 PF02449 Glyco_hydro_42: Beta- 37.8 2.9E+02 0.0063 28.1 10.5 135 73-227 214-356 (374)
54 TIGR01233 lacG 6-phospho-beta- 37.8 87 0.0019 33.3 6.8 63 24-90 128-211 (467)
55 PRK10673 acyl-CoA esterase; Pr 36.5 1.3E+02 0.0028 27.7 7.1 63 37-102 31-95 (255)
56 PRK13511 6-phospho-beta-galact 36.4 1E+02 0.0022 32.9 7.0 61 24-88 129-210 (469)
57 PF00167 FGF: Fibroblast growt 36.0 76 0.0016 27.0 5.0 57 300-359 9-66 (122)
58 PF00232 Glyco_hydro_1: Glycos 35.6 42 0.00091 35.4 4.0 66 24-92 134-219 (455)
59 PRK00865 glutamate racemase; P 35.4 1.6E+02 0.0035 28.5 7.8 60 35-95 18-77 (261)
60 PF06229 FRG1: FRG1-like famil 33.9 99 0.0021 29.0 5.7 36 321-358 25-61 (191)
61 cd08165 MPP_MPPE1 human MPPE1 32.8 1.1E+02 0.0024 27.2 5.7 85 1-96 1-86 (156)
62 PF06268 Fascin: Fascin domain 32.7 1.7E+02 0.0036 24.3 6.5 69 285-358 25-98 (111)
63 PF10035 DUF2179: Uncharacteri 31.4 49 0.0011 24.0 2.6 23 73-95 28-50 (55)
64 cd07366 3MGA_Dioxygenase Subun 29.7 64 0.0014 32.8 4.0 28 68-95 69-96 (328)
65 PRK13364 protocatechuate 4,5-d 29.2 63 0.0014 32.0 3.8 30 68-97 31-60 (278)
66 cd00058 FGF Acidic and basic f 28.9 3.8E+02 0.0081 23.1 8.9 55 301-358 8-63 (123)
67 PLN02814 beta-glucosidase 28.9 1.1E+02 0.0024 33.0 5.8 67 158-227 385-462 (504)
68 TIGR03101 hydr2_PEP hydrolase, 28.5 2.1E+02 0.0045 28.0 7.3 68 33-101 40-112 (266)
69 TIGR03356 BGL beta-galactosida 28.3 1.8E+02 0.0038 30.6 7.2 67 158-227 335-415 (427)
70 PRK13363 protocatechuate 4,5-d 28.2 73 0.0016 32.5 4.1 29 68-96 71-99 (335)
71 cd07949 PCA_45_Doxase_B_like_1 27.8 70 0.0015 31.6 3.9 29 68-96 31-59 (276)
72 KOG3737 Predicted polypeptide 27.6 45 0.00098 34.8 2.5 62 265-329 531-598 (603)
73 cd02070 corrinoid_protein_B12- 27.6 1.4E+02 0.003 27.8 5.6 45 47-100 132-178 (201)
74 KOG2230 Predicted beta-mannosi 27.4 1.3E+02 0.0027 33.2 5.8 85 39-128 424-525 (867)
75 PF06838 Met_gamma_lyase: Meth 27.3 1.2E+02 0.0025 31.7 5.3 54 38-94 144-197 (403)
76 TIGR02026 BchE magnesium-proto 26.6 1.2E+02 0.0026 32.4 5.6 26 72-97 77-102 (497)
77 PRK09593 arb 6-phospho-beta-gl 26.5 2.1E+02 0.0045 30.6 7.4 63 24-89 150-234 (478)
78 TIGR00067 glut_race glutamate 26.3 2.9E+02 0.0063 26.7 7.8 61 35-96 11-72 (251)
79 PLN02998 beta-glucosidase 26.3 1.5E+02 0.0032 32.0 6.2 77 148-227 379-467 (497)
80 PRK09852 cryptic 6-phospho-bet 26.0 1.6E+02 0.0035 31.4 6.5 78 148-227 353-445 (474)
81 KOG1959 Glycosyl hydrolase, fa 25.7 6.2E+02 0.013 29.4 10.8 87 3-96 229-330 (996)
82 COG5111 RPC34 DNA-directed RNA 25.2 1E+02 0.0022 29.9 4.2 75 1-85 145-222 (301)
83 PF00975 Thioesterase: Thioest 25.0 67 0.0014 29.4 3.0 68 38-106 16-84 (229)
84 PLN02899 alpha-galactosidase 24.7 53 0.0011 36.2 2.5 63 300-367 486-559 (633)
85 cd07384 MPP_Cdc1_like Saccharo 24.5 2.4E+02 0.0053 25.4 6.5 90 1-96 1-97 (171)
86 cd08163 MPP_Cdc1 Saccharomyces 24.5 2.6E+02 0.0056 27.2 7.1 61 33-95 32-93 (257)
87 PLN02748 tRNA dimethylallyltra 24.4 1.6E+02 0.0035 31.5 6.0 31 66-97 92-122 (468)
88 cd01828 sialate_O-acetylestera 24.3 3.9E+02 0.0085 23.1 7.8 49 46-95 46-95 (169)
89 PLN02849 beta-glucosidase 24.1 2.4E+02 0.0051 30.5 7.3 67 158-227 383-462 (503)
90 cd01833 XynB_like SGNH_hydrola 23.9 3.6E+02 0.0077 23.0 7.3 68 22-95 19-87 (157)
91 PF15016 DUF4520: Domain of un 23.9 2.6E+02 0.0057 22.8 5.8 57 312-370 4-60 (85)
92 smart00442 FGF Acidic and basi 23.8 1.4E+02 0.0031 25.8 4.6 62 302-364 13-78 (126)
93 cd07950 Gallate_Doxase_N The N 23.7 92 0.002 30.8 3.8 29 68-96 31-59 (277)
94 cd07372 2A5CPDO_B The beta sub 23.6 97 0.0021 30.9 4.0 30 67-96 32-61 (294)
95 cd07359 PCA_45_Doxase_B_like S 22.3 1.1E+02 0.0025 29.6 4.2 30 67-96 26-55 (271)
96 PRK13370 mhpB 3-(2,3-dihydroxy 21.7 96 0.0021 31.3 3.6 39 58-98 17-55 (313)
97 PRK14729 miaA tRNA delta(2)-is 21.2 2.3E+02 0.005 28.4 6.1 31 66-97 73-103 (300)
98 cd02065 B12-binding_like B12 b 21.1 2.2E+02 0.0048 23.4 5.2 42 47-98 49-91 (125)
99 TIGR02427 protocat_pcaD 3-oxoa 21.1 3.5E+02 0.0077 23.8 7.0 64 37-101 28-92 (251)
100 PRK13365 protocatechuate 4,5-d 20.8 1.1E+02 0.0024 30.2 3.8 31 67-97 30-60 (279)
101 cd07368 PhnC_Bs_like PhnC is a 20.4 1.1E+02 0.0024 30.1 3.7 32 67-98 28-59 (277)
102 PRK09589 celA 6-phospho-beta-g 20.2 1.7E+02 0.0038 31.2 5.3 69 158-228 366-449 (476)
103 PRK15014 6-phospho-beta-glucos 20.2 2.3E+02 0.005 30.2 6.2 35 24-61 146-180 (477)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.93 E-value=7.9e-26 Score=218.12 Aligned_cols=194 Identities=24% Similarity=0.415 Sum_probs=142.7
Q ss_pred CEEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCC-------ChhhHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ-------NVKDWYRY 73 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dgn~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~-------n~~dW~~~ 73 (414)
+||||+|.. |+|+... +. +....-..+.+.++|+.||+|||+++.|++|||+|||+.... +..+|.++
T Consensus 77 ~vild~h~~-~~w~~~~---~~-~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 77 YVILDLHNA-PGWANGG---DG-YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp EEEEEEEES-TTCSSST---ST-TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred eEEEEeccC-ccccccc---cc-cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 599999977 6774332 11 111112346677899999999999999999999999998521 12678999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCccCCCcchh-hhcccccccCCCcEEEEEeecCCCCC-CCccCCCCCcchhhHHHHHHHH
Q 015062 74 MQLGAEAVHAANPEVLVILSGLNFDKDLSF-VRNQAVNLTFTGKLVFEAHWYGFTDG-QAWVDGNPNQVCGRVVDNVMRL 151 (414)
Q Consensus 74 ~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~-v~~~Pv~l~~~~klVYs~H~Y~p~~~-~~W~~~~~~~~~~~~~~~~~~~ 151 (414)
+++++++||+++|+++|+|+|..|+.++.. ....|. ...+++||++|.|.+... ..+... .......+...+...
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~H~Y~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 228 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPN--DADNNDVYSFHFYDPYDFSDQWNPG-NWGDASALESSFRAA 228 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTT--TTTTSEEEEEEEETTTCHHTTTSTC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcc--cccCceeEEeeEeCCCCcCCccccc-cchhhhHHHHHHHHH
Confidence 999999999999999999999999887766 444552 135789999999997652 222110 001122334455556
Q ss_pred HHHHHhcCCCEEEeccCcCCCCCCccchHHHHHHHHHHHHCCCcEEEeccCc
Q 015062 152 SGFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELDWDWALWTLVG 203 (414)
Q Consensus 152 ~gfl~~~g~Pv~lGEFG~~~~~~~~~~~~~~~~~l~~l~e~~i~Wa~Wa~~G 203 (414)
..++.+.|.||+|||||....+.. ....++..++++++++++||++|++++
T Consensus 229 ~~~~~~~g~pv~~gE~G~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~W~~~~ 279 (281)
T PF00150_consen 229 LNWAKKNGKPVVVGEFGWSNNDGN-GSTDYADAWLDYLEQNGIGWIYWSWKP 279 (281)
T ss_dssp HHHHHHTTSEEEEEEEESSTTTSC-HHHHHHHHHHHHHHHTTCEEEECEESS
T ss_pred HHHHHHcCCeEEEeCcCCcCCCCC-cCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 666677899999999999854332 346788888999999999999999974
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=5.6e-15 Score=152.43 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=107.3
Q ss_pred CEEEecCCCCCCcccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCC--CCCCh-hhHHHHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDG-NGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG--PKQNV-KDWYRYMQL 76 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dg-n~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~--~~~n~-~dW~~~~~~ 76 (414)
+|+||+|....+.-|....+ ...+....-+.+++++.|++||.||++.++|||||++|||++ ....+ .....+...
T Consensus 131 ~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~ 210 (407)
T COG2730 131 YVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDV 210 (407)
T ss_pred eEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHH
Confidence 69999999886554543333 234444444559999999999999999999999999999996 21111 112344455
Q ss_pred HHHHHHhcCCCcEEEEcCccCCC---------------cchhhhccccccc--CCCcEEEEEeecCCCCC--CCccCCCC
Q 015062 77 GAEAVHAANPEVLVILSGLNFDK---------------DLSFVRNQAVNLT--FTGKLVFEAHWYGFTDG--QAWVDGNP 137 (414)
Q Consensus 77 ~~~aIr~~dP~~LIiVeG~~~~~---------------dLs~v~~~Pv~l~--~~~klVYs~H~Y~p~~~--~~W~~~~~ 137 (414)
+.++|.+..|..+|.++|..+.. ........|+..+ ...+++|++|.|++... ..|.....
T Consensus 211 v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~ 290 (407)
T COG2730 211 VRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGSWTVGGE 290 (407)
T ss_pred HHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCCCCccCC
Confidence 55666677777799999986544 1111111222222 35689999999987642 24442111
Q ss_pred CcchhhHHHHHHHHHHHH-HhcCCCEEEeccCcCCC
Q 015062 138 NQVCGRVVDNVMRLSGFL-LEQGWPLFVSEFGADLR 172 (414)
Q Consensus 138 ~~~~~~~~~~~~~~~gfl-~~~g~Pv~lGEFG~~~~ 172 (414)
..........+.+.+++- ...+.|+++||||+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~ 326 (407)
T COG2730 291 FDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYN 326 (407)
T ss_pred cccccccceeeecceeecccccceeeeeccccCccc
Confidence 111122222223333322 24799999999999884
No 3
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.69 E-value=6.5e-08 Score=80.98 Aligned_cols=95 Identities=24% Similarity=0.520 Sum_probs=72.7
Q ss_pred cCCCCceeeccCCCCceeeccCCC---CCCccccCCceeeeeccceeEeeccCC-cccEEeeecC--CCCCceEEEecCc
Q 015062 260 HPATGLCVQRKSFLDPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHVG-KPAKLGIICT--DCGSTWEIISDSK 333 (414)
Q Consensus 260 ~~~tg~c~~~~~~~~~l~~~~c~~---~~~W~~~~~~~l~~~~~~~cl~a~~~g-~~~~~~~~c~--~~~~~W~~~s~s~ 333 (414)
...+|+|+++.+...++.+.+|.+ .+.|.|++++.|+++ +++||++.+.. .++.+ ..|. +++|+|.+..++.
T Consensus 3 ~~~~~~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~~~~v~l-~~c~~~~~~Q~W~~~~~~~ 80 (117)
T smart00458 3 SGNTGKCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNTGSTVTL-YSCDGDADNQYWTVNKDGT 80 (117)
T ss_pred eccCCccEecCCCCceEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCCCCEEEE-EECCCCCcCCEEEECCCee
Confidence 347899999855424689999988 379999999999887 89999998864 34444 8897 4789999988554
Q ss_pred cEEeeecCCCceeEEEecCCC---ceeeeee
Q 015062 334 MHLSSKADNGTTVCLDVDSSN---TIVTNTC 361 (414)
Q Consensus 334 ~~~~~~~~~~~~lcld~~~~~---~ivt~~c 361 (414)
+ ... .+.+|||+.... .|+.+.|
T Consensus 81 i--~~~---~~~~cl~~~~~~~~~~~~~~~c 106 (117)
T smart00458 81 I--RNP---DSGLCLDVKDGNTGTKVILWTC 106 (117)
T ss_pred E--EeC---CCCEEEecCCCCCCceEEEEeC
Confidence 3 222 689999998543 6777887
No 4
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.60 E-value=3.5e-07 Score=76.20 Aligned_cols=95 Identities=27% Similarity=0.595 Sum_probs=71.9
Q ss_pred CCCceeeccCC--CCceeeccCCCC---CCccccCCceeeeeccceeEeeccC--CcccEEeeecC--CCCCceEEEecC
Q 015062 262 ATGLCVQRKSF--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHV--GKPAKLGIICT--DCGSTWEIISDS 332 (414)
Q Consensus 262 ~tg~c~~~~~~--~~~l~~~~c~~~---~~W~~~~~~~l~~~~~~~cl~a~~~--g~~~~~~~~c~--~~~~~W~~~s~s 332 (414)
.+|+|+++.+. ..++.+.+|.+. +.|.++.++.|+++.+++||++.+. |.++.+ ..|. +++|+|++..+.
T Consensus 8 ~~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~-~~c~~~~~~Q~W~~~~~~ 86 (124)
T cd00161 8 NTGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRL-YTCSGGSDNQRWTFNKDG 86 (124)
T ss_pred CCCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEE-EECCCCCcCCEEEECCCc
Confidence 39999998542 356899999975 7999999888988778899999886 566666 7898 467999998774
Q ss_pred ccEEeeecCCCceeEEEecCC---C-ceeeeeee
Q 015062 333 KMHLSSKADNGTTVCLDVDSS---N-TIVTNTCK 362 (414)
Q Consensus 333 ~~~~~~~~~~~~~lcld~~~~---~-~ivt~~c~ 362 (414)
+|... .+.+|||+... + .|+...|.
T Consensus 87 --~i~~~---~~~~cl~~~~~~~~~~~v~~~~c~ 115 (124)
T cd00161 87 --TIRNL---KSGKCLDVKGGNTNGTNLILWTCD 115 (124)
T ss_pred --EEEEC---CCCeEEeCCCCCCCCCEEEEEeCC
Confidence 34333 37899999853 3 55557663
No 5
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.49 E-value=8e-06 Score=79.22 Aligned_cols=171 Identities=13% Similarity=0.194 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCC---hhhHH-----HHHHHHHHHHHhcCCCcEEEEcCccCCCc--
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN---VKDWY-----RYMQLGAEAVHAANPEVLVILSGLNFDKD-- 100 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n---~~dW~-----~~~~~~~~aIr~~dP~~LIiVeG~~~~~d-- 100 (414)
.+.+.+.-+.+++||++. |...|+.|||....+. ...|. .++.++.+++|+++|+..+++-..+-...
T Consensus 56 ~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~ 133 (254)
T smart00633 56 LARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNA 133 (254)
T ss_pred HHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccH
Confidence 567888889999999987 6679999999764211 12453 46788999999999999999964321111
Q ss_pred -----chhh---hcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcCCC
Q 015062 101 -----LSFV---RNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLR 172 (414)
Q Consensus 101 -----Ls~v---~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~~~ 172 (414)
+..+ ...-+ ++ +-+=+..|++... ...+.+.+.+.+ +.+.|.||+|+||++...
T Consensus 134 k~~~~~~~v~~l~~~g~--~i-DgiGlQ~H~~~~~-----------~~~~~~~~~l~~----~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 134 KRQAIYELVKKLKAKGV--PI-DGIGLQSHLSLGS-----------PNIAEIRAALDR----FASLGLEIQITELDISGY 195 (254)
T ss_pred HHHHHHHHHHHHHHCCC--cc-ceeeeeeeecCCC-----------CCHHHHHHHHHH----HHHcCCceEEEEeecCCC
Confidence 1111 11111 12 2355677876311 112334444443 344699999999999875
Q ss_pred CCCccchHHHHHHHHHHHHCC--CcEEEeccCccccccccccCCCceeecccCCCC
Q 015062 173 GNNVNDNRYLNCFFGVAAELD--WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 226 (414)
Q Consensus 173 ~~~~~~~~~~~~~l~~l~e~~--i~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~~dW~ 226 (414)
.....+.++++.+++.+.++. .|.++|.+.-.+--+. ++.-||++.|++
T Consensus 196 ~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~W~~-----~~~~~L~d~~~~ 246 (254)
T smart00633 196 PNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYSWLD-----GGAPLLFDANYQ 246 (254)
T ss_pred CcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCcccC-----CCCceeECCCCC
Confidence 322345678899998888865 5788997642111111 123467776664
No 6
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.33 E-value=1.1e-06 Score=74.12 Aligned_cols=93 Identities=27% Similarity=0.626 Sum_probs=67.7
Q ss_pred CCceeecc---CCCCceeeccCCCC--CCccccCCceeeeeccc-eeEeeccCC--cccEEeeecC-C-CCCceEEEecC
Q 015062 263 TGLCVQRK---SFLDPLTLGPCTES--EAWSYTPHKTISLKGAY-FCLQAKHVG--KPAKLGIICT-D-CGSTWEIISDS 332 (414)
Q Consensus 263 tg~c~~~~---~~~~~l~~~~c~~~--~~W~~~~~~~l~~~~~~-~cl~a~~~g--~~~~~~~~c~-~-~~~~W~~~s~s 332 (414)
+|+|+++. ....++.+.+|.++ +.|.+++++.|...... +||++.+.+ .++.+ ..|. . .+|+|.+..+.
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l-~~C~~~~~~Q~W~~~~~~ 89 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVL-WPCDSNSSNQRWKFDPDG 89 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEE-EETTTTGGGGBEEEETTS
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccCCCceEEE-eeccCCccCCeEEEcCCe
Confidence 99999997 22356999999996 68999999977765544 599999876 55666 8899 3 34899999844
Q ss_pred ccEEeeecCCCceeEEEecC---CCceeeeee
Q 015062 333 KMHLSSKADNGTTVCLDVDS---SNTIVTNTC 361 (414)
Q Consensus 333 ~~~~~~~~~~~~~lcld~~~---~~~ivt~~c 361 (414)
. |... .+.+|||+.. +..++.+.|
T Consensus 90 ~--i~n~---~s~~cL~~~~~~~~~~l~~~~c 116 (124)
T PF00652_consen 90 R--IRNK---NSGLCLDVKGGSDGNPLVLWPC 116 (124)
T ss_dssp B--EEET---TTTEEEEEGGGSTTEBEEEEE-
T ss_pred e--EEeC---CCCEEEEecCCCCCCEEEEEEC
Confidence 4 4333 3789999994 457777877
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.16 E-value=0.0001 Score=80.13 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcchhhhccccc
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVN 110 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~v~~~Pv~ 110 (414)
.+.+.+.++.|.+|++++|.|+...|.||+.... ..-..+++++.+.||+.||.++|..+....... ....+
T Consensus 389 ~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~---~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~----~~~~~- 460 (604)
T PRK10150 389 QQAHLQAIRELIARDKNHPSVVMWSIANEPASRE---QGAREYFAPLAELTRKLDPTRPVTCVNVMFATP----DTDTV- 460 (604)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEeeccCCCccc---hhHHHHHHHHHHHHHhhCCCCceEEEecccCCc----ccccc-
Confidence 4567778899999999999999999999987532 234456678889999999999999886422110 00011
Q ss_pred ccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHH-HHHHhcCCCEEEeccCcCCC------CCCc----cch
Q 015062 111 LTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLS-GFLLEQGWPLFVSEFGADLR------GNNV----NDN 179 (414)
Q Consensus 111 l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~-gfl~~~g~Pv~lGEFG~~~~------~~~~----~~~ 179 (414)
.... =|+++|.|-. |.... .........+.... .+....+.|++++|||+... ++.. .+.
T Consensus 461 ~~~~--Dv~~~N~Y~~-----wy~~~--~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~ 531 (604)
T PRK10150 461 SDLV--DVLCLNRYYG-----WYVDS--GDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQC 531 (604)
T ss_pred cCcc--cEEEEcccce-----ecCCC--CCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHHH
Confidence 0111 2888877632 11100 00111111111111 11112389999999996432 1111 123
Q ss_pred HHHHHHHHHHHHCC--CcEEEeccCccccccccc-cCCCceeecccCCCCC
Q 015062 180 RYLNCFFGVAAELD--WDWALWTLVGSYYLREGV-IGLNEYYGLFDWNWCD 227 (414)
Q Consensus 180 ~~~~~~l~~l~e~~--i~Wa~Wa~~Gsyy~r~g~-~~~~et~Gll~~dW~t 227 (414)
.+++...+.++++. +|-+.|++.- |..-.|. ...++..||++.|...
T Consensus 532 ~~~~~~~~~~~~~p~~~G~~iW~~~D-~~~~~g~~~~~g~~~Gl~~~dr~~ 581 (604)
T PRK10150 532 AFLDMYHRVFDRVPAVVGEQVWNFAD-FATSQGILRVGGNKKGIFTRDRQP 581 (604)
T ss_pred HHHHHHHHHHhcCCceEEEEEEeeec-cCCCCCCcccCCCcceeEcCCCCC
Confidence 45666666777655 5667787531 1010111 1234678999998743
No 8
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.06 E-value=9.7e-06 Score=66.14 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=46.1
Q ss_pred HHHHhCCCceEEEEeccCC-CCCCC-------C--ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcchhhhccccc
Q 015062 41 MATIFNGVRNVVGMSLRNE-LRGPK-------Q--NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVN 110 (414)
Q Consensus 41 iA~ryk~~pnViG~dL~NE-P~~~~-------~--n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~v~~~Pv~ 110 (414)
|-++|+..+.|++-||.|| |.... . ....-.+.+++++++||++||++.|.++. |+.+...+...+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~--~~~~~~~~~~~~-- 76 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF--WGGDWEDLEQLQ-- 76 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec--ccCCHHHHHHhc--
Confidence 4579999999999999999 66211 1 12456678899999999999999998753 333333333222
Q ss_pred ccCCCcEEEEEeec
Q 015062 111 LTFTGKLVFEAHWY 124 (414)
Q Consensus 111 l~~~~klVYs~H~Y 124 (414)
++ .-=|+++|.|
T Consensus 77 ~~--~~DvisfH~Y 88 (88)
T PF12876_consen 77 AE--NLDVISFHPY 88 (88)
T ss_dssp -T--T-SSEEB-EE
T ss_pred hh--cCCEEeeecC
Confidence 11 1238999998
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.74 E-value=0.00061 Score=67.39 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
.+.+.+-++.|.+|++++|.||...+.||+ .....++++.+.+|+.||.++|.....
T Consensus 103 ~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 103 RENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp HHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred HHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 567788899999999999999999999999 355667888899999999999987665
No 10
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.59 E-value=0.00041 Score=70.10 Aligned_cols=140 Identities=19% Similarity=0.291 Sum_probs=81.3
Q ss_pred HHHHhCC---CceEEEEeccCCCCC-------CCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCc------chhh
Q 015062 41 MATIFNG---VRNVVGMSLRNELRG-------PKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKD------LSFV 104 (414)
Q Consensus 41 iA~ryk~---~pnViG~dL~NEP~~-------~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~d------Ls~v 104 (414)
+-+.+|. .|..| -+=||-.. ...++....++...+++|||+++|+..|+|--.+-+.. +..+
T Consensus 115 vl~~l~~~G~~pd~V--QVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l 192 (332)
T PF07745_consen 115 VLQALKAAGVTPDMV--QVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNL 192 (332)
T ss_dssp HHHHHHHTT--ESEE--EESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCccEE--EeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHH
Confidence 3344443 34443 77888433 22356677788899999999999999999964432221 1222
Q ss_pred hcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHH-hcCCCEEEeccCcCCCC----------
Q 015062 105 RNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLL-EQGWPLFVSEFGADLRG---------- 173 (414)
Q Consensus 105 ~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~-~~g~Pv~lGEFG~~~~~---------- 173 (414)
...-+ +++ |..+++|.+.+. ..+.+...+. .+. +++.||+|.|.|.+.+.
T Consensus 193 ~~~g~--d~D---viGlSyYP~w~~----------~l~~l~~~l~----~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~ 253 (332)
T PF07745_consen 193 KAAGV--DFD---VIGLSYYPFWHG----------TLEDLKNNLN----DLASRYGKPVMVVETGYPWTLDDGDGTGNII 253 (332)
T ss_dssp HHTTG--G-S---EEEEEE-STTST-----------HHHHHHHHH----HHHHHHT-EEEEEEE---SBS--SSSS--SS
T ss_pred HhcCC--Ccc---eEEEecCCCCcc----------hHHHHHHHHH----HHHHHhCCeeEEEeccccccccccccccccC
Confidence 22222 332 889999986542 1223333333 222 36899999999976540
Q ss_pred -----------CCccchHHHHHHHHHHHH----CCCcEEEecc
Q 015062 174 -----------NNVNDNRYLNCFFGVAAE----LDWDWALWTL 201 (414)
Q Consensus 174 -----------~~~~~~~~~~~~l~~l~e----~~i~Wa~Wa~ 201 (414)
....+.+|++++++.+.+ +++|-+||.-
T Consensus 254 ~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP 296 (332)
T PF07745_consen 254 GATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEP 296 (332)
T ss_dssp SSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-T
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeecc
Confidence 001257889999998887 6789999953
No 11
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=97.55 E-value=0.0004 Score=57.95 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=52.9
Q ss_pred CCCccccC----Cc--eeeeeccceeEeeccC----CcccEEeeecC-CCCCceEEEecCccEEeeecCCCceeEEEecC
Q 015062 284 SEAWSYTP----HK--TISLKGAYFCLQAKHV----GKPAKLGIICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDS 352 (414)
Q Consensus 284 ~~~W~~~~----~~--~l~~~~~~~cl~a~~~----g~~~~~~~~c~-~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~ 352 (414)
+++|++++ .+ .|+-+.+++||++.+. |.++.+ ..|+ .++|+|++...+..+...+.. .+.+|||+..
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~-~~~~~~~~Q~W~i~~~~~g~y~I~n~-~s~~~Ldv~~ 79 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQ-WTCNGNDNQQWKIEPVGDGYYRIRNK-NSGKVLDVAG 79 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEE-EESSSSGGGEEEEEESTTSEEEEEET-STTEEEEEGG
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEE-ecCCCCcCcEEEEEEecCCeEEEEEC-CCCcEEEECC
Confidence 36787765 33 4555679999999985 444444 7887 788999998887664433322 6789999983
Q ss_pred ----CC-ceeeeee
Q 015062 353 ----SN-TIVTNTC 361 (414)
Q Consensus 353 ----~~-~ivt~~c 361 (414)
+| .|+.+.|
T Consensus 80 ~~~~~g~~v~~~~~ 93 (105)
T PF14200_consen 80 GSTANGTNVQQWEY 93 (105)
T ss_dssp GSSSTTEBEEEEE-
T ss_pred CCCCCCCEEEEEeC
Confidence 45 6777887
No 12
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=97.48 E-value=0.00023 Score=59.27 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=54.2
Q ss_pred eeecCCCCceeeccCCC-CceeeccCCC-C--CCccccCCceeeeeccceeEeeccCCcc-cEEeeecC-CCCCceEE
Q 015062 257 VIYHPATGLCVQRKSFL-DPLTLGPCTE-S--EAWSYTPHKTISLKGAYFCLQAKHVGKP-AKLGIICT-DCGSTWEI 328 (414)
Q Consensus 257 ~~~~~~tg~c~~~~~~~-~~l~~~~c~~-~--~~W~~~~~~~l~~~~~~~cl~a~~~g~~-~~~~~~c~-~~~~~W~~ 328 (414)
.++.. +++|+++.+.. .++.+..|.. + ++|.+.+++.|....+++||++.+.... ......|+ .++|+|.+
T Consensus 40 ~~~~~-~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~~~Q~W~~ 116 (117)
T smart00458 40 AIRIA-TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKDGNTGTKVILWTCNGNPNQKWIF 116 (117)
T ss_pred eEEec-CCccCccCCCCCCEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCCCCCCceEEEEeCCCCccccEEe
Confidence 34444 89999985543 4689999986 3 6999998888888889999999876542 33447888 67899986
No 13
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=97.40 E-value=0.00039 Score=57.64 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=52.4
Q ss_pred CCceeeccCC--CCceeeccCCC---CCCccccCCceeeeeccceeEeeccC---CcccEEeeecC-CCCCceEE
Q 015062 263 TGLCVQRKSF--LDPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHV---GKPAKLGIICT-DCGSTWEI 328 (414)
Q Consensus 263 tg~c~~~~~~--~~~l~~~~c~~---~~~W~~~~~~~l~~~~~~~cl~a~~~---g~~~~~~~~c~-~~~~~W~~ 328 (414)
+++|+++.+. ..++.+.+|.. .++|.+.+++.|..+.+++||++.+. |.++.+ ..|. ..+|+|++
T Consensus 51 ~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~v~~-~~c~~~~~Q~W~~ 124 (124)
T cd00161 51 SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGNTNGTNLIL-WTCDGGPNQKWKF 124 (124)
T ss_pred CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCCCCCCCCEEEE-EeCCCCccceEeC
Confidence 8999998543 25689999987 37999998888888788999999886 565555 8898 77899974
No 14
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.37 E-value=0.0033 Score=63.25 Aligned_cols=173 Identities=14% Similarity=0.236 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCC-----ChhhHHH-----HHHHHHHHHHhcCCCcEEEEcCccCCCc
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ-----NVKDWYR-----YMQLGAEAVHAANPEVLVILSGLNFDKD 100 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~-----n~~dW~~-----~~~~~~~aIr~~dP~~LIiVeG~~~~~d 100 (414)
.+.+.+..+.|++||++...|...|+.|||..... ....|+. ++.++-+..|+++|+...|+ +.|+..
T Consensus 105 ~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~--NDy~~~ 182 (320)
T PF00331_consen 105 RARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAKLFY--NDYNIE 182 (320)
T ss_dssp HHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEE--EESSTT
T ss_pred HHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcEEEe--cccccc
Confidence 35566778899999998777999999999987532 1135764 67889999999999999999 334321
Q ss_pred c-----------hhhhcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCc
Q 015062 101 L-----------SFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGA 169 (414)
Q Consensus 101 L-----------s~v~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~ 169 (414)
- ..+..+-+ +. +-+=+-.|+-... . .+.+.+.+++ +.+.|.||.|+||-+
T Consensus 183 ~~~k~~~~~~lv~~l~~~gv--pI-dgIG~Q~H~~~~~-----------~-~~~i~~~l~~----~~~~Gl~i~ITElDv 243 (320)
T PF00331_consen 183 SPAKRDAYLNLVKDLKARGV--PI-DGIGLQSHFDAGY-----------P-PEQIWNALDR----FASLGLPIHITELDV 243 (320)
T ss_dssp STHHHHHHHHHHHHHHHTTH--CS--EEEEEEEEETTS-----------S-HHHHHHHHHH----HHTTTSEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhCCC--cc-ceechhhccCCCC-----------C-HHHHHHHHHH----HHHcCCceEEEeeee
Confidence 1 11111111 22 2477888875421 1 2333333333 355799999999988
Q ss_pred CCCCCC------ccchHHHHHHHHHHHHCC---C-cEEEeccCccccccccccCCCceeecccCCCC
Q 015062 170 DLRGNN------VNDNRYLNCFFGVAAELD---W-DWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 226 (414)
Q Consensus 170 ~~~~~~------~~~~~~~~~~l~~l~e~~---i-~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~~dW~ 226 (414)
...... .....+++.+++.+.++. + +.++|.+.-.+--+.... .+.-+|++.||.
T Consensus 244 ~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~--~~~~~lfd~~~~ 308 (320)
T PF00331_consen 244 RDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTP--PDRPLLFDEDYQ 308 (320)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHS--EG--SSB-TTSB
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCC--CCCCeeECCCcC
Confidence 765432 134678888888888877 4 678887753221111111 123456666664
No 15
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.32 E-value=0.0043 Score=59.80 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCC---ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCC
Q 015062 23 FFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ---NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK 99 (414)
Q Consensus 23 ~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~---n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~ 99 (414)
+|+....+ ...++.+++. +..... +-.+|||....+ +..+-.....+..+.+| .+...|+-..+.+.+
T Consensus 45 lwg~~~~~----~~~~~~v~~~-~~~~~~--ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~--~~~~~l~sPa~~~~~ 115 (239)
T PF11790_consen 45 LWGPGSDD----DDWLANVQNA-HPGSKH--LLGFNEPDLPGQSNMSPEEAAALWKQYMNPLR--SPGVKLGSPAVAFTN 115 (239)
T ss_pred ccCCCCCc----hHHHHHHHhh-ccCccc--eeeecCCCCCCCCCCCHHHHHHHHHHHHhHhh--cCCcEEECCeecccC
Confidence 56655443 2335566666 333222 356899988644 23333333334444455 366666655554332
Q ss_pred -----cchhhhc----ccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcC
Q 015062 100 -----DLSFVRN----QAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGAD 170 (414)
Q Consensus 100 -----dLs~v~~----~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~ 170 (414)
.++.+.. -+.... ==+.++|+|... ...+...+.+.. ...+.||+|+|||..
T Consensus 116 ~~~~~g~~Wl~~F~~~~~~~~~---~D~iavH~Y~~~-------------~~~~~~~i~~~~---~~~~kPIWITEf~~~ 176 (239)
T PF11790_consen 116 GGTPGGLDWLSQFLSACARGCR---VDFIAVHWYGGD-------------ADDFKDYIDDLH---NRYGKPIWITEFGCW 176 (239)
T ss_pred CCCCCccHHHHHHHHhcccCCC---ccEEEEecCCcC-------------HHHHHHHHHHHH---HHhCCCEEEEeeccc
Confidence 2333322 110111 128899999311 122333333221 225799999999975
Q ss_pred CC---CCCccchHHHHHHHHHHHHCC
Q 015062 171 LR---GNNVNDNRYLNCFFGVAAELD 193 (414)
Q Consensus 171 ~~---~~~~~~~~~~~~~l~~l~e~~ 193 (414)
.. ........+++.++.+|++..
T Consensus 177 ~~~~~~~~~~~~~fl~~~~~~ld~~~ 202 (239)
T PF11790_consen 177 NGGSQGSDEQQASFLRQALPWLDSQP 202 (239)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 32 222234789999999998775
No 16
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.26 E-value=0.00052 Score=57.52 Aligned_cols=70 Identities=24% Similarity=0.560 Sum_probs=55.6
Q ss_pred eeeecCCCCceeeccCCC--CceeeccCCCC---CCccccCCceeeeeccceeEeecc--CCcccEEeeecC-CCCCce
Q 015062 256 KVIYHPATGLCVQRKSFL--DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKH--VGKPAKLGIICT-DCGSTW 326 (414)
Q Consensus 256 ~~~~~~~tg~c~~~~~~~--~~l~~~~c~~~---~~W~~~~~~~l~~~~~~~cl~a~~--~g~~~~~~~~c~-~~~~~W 326 (414)
.++......+|+.+.+.. .++.+.+|... ++|.+.+++.|.-..+++||++.+ .+.++.+ ..|. +++|+|
T Consensus 47 ~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~~~~~~~l~~-~~c~~~~~Q~W 124 (124)
T PF00652_consen 47 QIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKGGSDGNPLVL-WPCNGSPNQQW 124 (124)
T ss_dssp BEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGGGSTTEBEEE-EE-TSSGGGBE
T ss_pred ceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecCCCCCCEEEE-EECCCCccccC
Confidence 355555556699986543 46999999977 699999988888878899999999 7888888 6898 778988
No 17
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=97.18 E-value=0.00075 Score=56.29 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=57.5
Q ss_pred cceeeecCCCCceeeccCC----CCceeeccCCCC--CCccccCCc----eeeeeccceeEeeccC----CcccEEeeec
Q 015062 254 LHKVIYHPATGLCVQRKSF----LDPLTLGPCTES--EAWSYTPHK----TISLKGAYFCLQAKHV----GKPAKLGIIC 319 (414)
Q Consensus 254 ~~~~~~~~~tg~c~~~~~~----~~~l~~~~c~~~--~~W~~~~~~----~l~~~~~~~cl~a~~~----g~~~~~~~~c 319 (414)
.++.|....||+|+.+.+. .+++.+++|.+. ++|...+.+ .|.-+.+++||++.+. |+++.+ +.|
T Consensus 15 g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~-~~~ 93 (105)
T PF14200_consen 15 GYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQ-WEY 93 (105)
T ss_dssp TEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEE-EE-
T ss_pred CEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEE-EeC
Confidence 4688888899999999542 356999999765 699997554 5777789999999875 455555 888
Q ss_pred -C-CCCCceEEE
Q 015062 320 -T-DCGSTWEII 329 (414)
Q Consensus 320 -~-~~~~~W~~~ 329 (414)
. +++|+|++.
T Consensus 94 ~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 94 DNGSDNQQWKLE 105 (105)
T ss_dssp STSSGGGEEEEE
T ss_pred CCCCccCEEEeC
Confidence 5 889999973
No 18
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0036 Score=65.19 Aligned_cols=187 Identities=17% Similarity=0.071 Sum_probs=101.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCC-CC---ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC
Q 015062 23 FFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP-KQ---NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 98 (414)
Q Consensus 23 ~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~-~~---n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~ 98 (414)
+..|+.+ ...+.++-..+.+-||-+|.+.|..|.|||.-. .. +.-+|.+.|. .-|...||+|+|-|+-..+-
T Consensus 112 ~iyD~k~-~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy---~yiK~ldd~hlvsvGD~~sp 187 (587)
T COG3934 112 VIYDPKF-RGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMY---AYIKWLDDGHLVSVGDPASP 187 (587)
T ss_pred cccchhh-cccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHH---HHhhccCCCCeeecCCcCCc
Confidence 3444434 455677778888899999999999999998763 12 2346666554 67899999999998655432
Q ss_pred CcchhhhcccccccCCCcE-EEEEeecCCCCCCCccCCCCCcchhhHHHHH-HHHHHHHHhcC-CCEEEeccCcCCCCCC
Q 015062 99 KDLSFVRNQAVNLTFTGKL-VFEAHWYGFTDGQAWVDGNPNQVCGRVVDNV-MRLSGFLLEQG-WPLFVSEFGADLRGNN 175 (414)
Q Consensus 99 ~dLs~v~~~Pv~l~~~~kl-VYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~-~~~~gfl~~~g-~Pv~lGEFG~~~~~~~ 175 (414)
-. ...|-+.. .-+ -=++|.|...+. .+ ..++...+ ...-......| .||++=|||....-+.
T Consensus 188 ~~----~~~pyN~r--~~vDya~~hLY~hyd~-----sl----~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~ 252 (587)
T COG3934 188 WP----QYAPYNAR--FYVDYAANHLYRHYDT-----SL----VSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQ 252 (587)
T ss_pred cc----ccCCcccc--eeeccccchhhhhccC-----Ch----hheeeeeecchhhccchhcccceeeccccCCcccccc
Confidence 11 11121110 000 114566642221 00 00000000 00001112256 8999999999876332
Q ss_pred ccchHHHHHHHHHHHHCCCcEEEeccCccccccc-cccC----CCceeecccCCCCCCC
Q 015062 176 VNDNRYLNCFFGVAAELDWDWALWTLVGSYYLRE-GVIG----LNEYYGLFDWNWCDIR 229 (414)
Q Consensus 176 ~~~~~~~~~~l~~l~e~~i~Wa~Wa~~Gsyy~r~-g~~~----~~et~Gll~~dW~t~~ 229 (414)
.....|+--....++-.+.|-.+|++.+- .+++ +.+. .+..|||.+.|-...-
T Consensus 253 e~s~ayfiw~~lal~~ggdGaLiwclsdf-~~gsdd~ey~w~p~el~fgiIradgpek~ 310 (587)
T COG3934 253 ENSPAYFIWIRLALDTGGDGALIWCLSDF-HLGSDDSEYTWGPMELEFGIIRADGPEKI 310 (587)
T ss_pred cccchhhhhhhhHHhhcCCceEEEEecCC-ccCCCCCCCccccccceeeeecCCCchhh
Confidence 22223322222255556778899999752 1111 1111 2567888888865433
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=96.72 E-value=0.0071 Score=64.22 Aligned_cols=201 Identities=16% Similarity=0.272 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHHhCCC------ceEEEEeccCCCCCC--C--CChhhHHHHHHHHHHHHHhcCCCcEEEEcCc--c
Q 015062 29 FNPDLWIKGLTKMATIFNGV------RNVVGMSLRNELRGP--K--QNVKDWYRYMQLGAEAVHAANPEVLVILSGL--N 96 (414)
Q Consensus 29 ~~~d~~~~~W~~iA~ryk~~------pnViG~dL~NEP~~~--~--~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~--~ 96 (414)
-+.++|.++.+.+++||.+. ..- -||+.|||... + ....++.++.+.++++||+++|...| +|. .
T Consensus 129 ~~~~~W~~lv~~~~~h~~~RYG~~ev~~W-~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~v--GGp~~~ 205 (486)
T PF01229_consen 129 KDYEKWRDLVRAFARHYIDRYGIEEVSTW-YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKV--GGPAFA 205 (486)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHTTS-EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEE--EEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCccccce-eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcc--cCcccc
Confidence 45689999888888887531 111 38999999875 1 23467889999999999999999874 555 3
Q ss_pred CCCc------chhhhcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhh---HHHHHHHHHHHHHh---cCCCEEE
Q 015062 97 FDKD------LSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGR---VVDNVMRLSGFLLE---QGWPLFV 164 (414)
Q Consensus 97 ~~~d------Ls~v~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~---~~~~~~~~~gfl~~---~g~Pv~l 164 (414)
++.. +.....+.+.++ .+|+|.|+...... ........... +...+......+.+ -++|+++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~D-----fiS~H~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~ 279 (486)
T PF01229_consen 206 WAYDEWCEDFLEFCKGNNCPLD-----FISFHSYGTDSAED-INENMYERIEDSRRLFPELKETRPIINDEADPNLPLYI 279 (486)
T ss_dssp TT-THHHHHHHHHHHHCT---S-----EEEEEEE-BESESE--SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEE
T ss_pred ccHHHHHHHHHHHHhcCCCCCC-----EEEEEecccccccc-cchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceee
Confidence 3321 122222222221 58999997432100 00000001111 11222222233333 3578999
Q ss_pred eccCcCCCCC-CccchHHHHH-HHH-HHHHCC--Cc-EEEeccCcccccccccc--CCCceeecccCCCCCCCchhHHHH
Q 015062 165 SEFGADLRGN-NVNDNRYLNC-FFG-VAAELD--WD-WALWTLVGSYYLREGVI--GLNEYYGLFDWNWCDIRNSSFLER 236 (414)
Q Consensus 165 GEFG~~~~~~-~~~~~~~~~~-~l~-~l~e~~--i~-Wa~Wa~~Gsyy~r~g~~--~~~et~Gll~~dW~t~~~~~~l~~ 236 (414)
+||....... ...+..|..+ ++. .++..+ ++ ..||++.-.|.- .+.+ -.-..+||++.+ ..+.| .-.+
T Consensus 280 tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee-~~~~~~pf~ggfGLlt~~--gI~KP-a~~A 355 (486)
T PF01229_consen 280 TEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEE-NGTPRKPFHGGFGLLTKL--GIPKP-AYYA 355 (486)
T ss_dssp EEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---T-TSS-SSSSSS-S-SEECC--CEE-H-HHHH
T ss_pred cccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhc-cCCCCCceecchhhhhcc--CCCch-HHHH
Confidence 9999865432 2334444333 334 344433 44 789998543321 0111 123458999998 44443 2234
Q ss_pred hhcccC
Q 015062 237 ISSLQS 242 (414)
Q Consensus 237 l~~l~~ 242 (414)
+..|..
T Consensus 356 ~~~L~~ 361 (486)
T PF01229_consen 356 FQLLNK 361 (486)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 444444
No 20
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.18 Score=50.07 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=85.1
Q ss_pred HHHHHHhCCC---ceEEEEeccCCCCCC----C---CChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCC--cchhh--
Q 015062 39 TKMATIFNGV---RNVVGMSLRNELRGP----K---QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK--DLSFV-- 104 (414)
Q Consensus 39 ~~iA~ryk~~---pnViG~dL~NEP~~~----~---~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~--dLs~v-- 104 (414)
+.+-++++++ |..+ -+=||-.+. + .+.+.|.+...+++.|||+++|+.+|++-=.+-.+ -.+.+
T Consensus 159 k~~l~~m~~eGi~pdmV--QVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd 236 (403)
T COG3867 159 KYVLTTMKKEGILPDMV--QVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFD 236 (403)
T ss_pred HHHHHHHHHcCCCccce--EeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHH
Confidence 3444555543 3332 566887664 1 25677888899999999999999999884332221 12222
Q ss_pred --hcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcCCC---CC-----
Q 015062 105 --RNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLR---GN----- 174 (414)
Q Consensus 105 --~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~~~---~~----- 174 (414)
..+-++ --|+..-+|.+-++ .-.++...+.+.. .+++.-|+|-|-+..++ +.
T Consensus 237 ~ltk~nvd-----fDVig~SyYpyWhg----------tl~nL~~nl~dia---~rY~K~VmV~Etay~yTlEdgDg~~Nt 298 (403)
T COG3867 237 ELTKRNVD-----FDVIGSSYYPYWHG----------TLNNLTTNLNDIA---SRYHKDVMVVETAYTYTLEDGDGHENT 298 (403)
T ss_pred HHHHcCCC-----ceEEeeeccccccC----------cHHHHHhHHHHHH---HHhcCeEEEEEecceeeeccCCCCCCc
Confidence 222222 34888888876542 2334444444431 23678889988876322 10
Q ss_pred ---------C----ccchHHHHHHHHHHH----HCCCcEEEecc
Q 015062 175 ---------N----VNDNRYLNCFFGVAA----ELDWDWALWTL 201 (414)
Q Consensus 175 ---------~----~~~~~~~~~~l~~l~----e~~i~Wa~Wa~ 201 (414)
. +.+..+++++++... .+|+|-+||.-
T Consensus 299 ~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWEp 342 (403)
T COG3867 299 FPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWEP 342 (403)
T ss_pred CCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEecc
Confidence 0 124566777777775 47899999953
No 21
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.63 E-value=0.13 Score=59.51 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
.+.+.+-++.|.+|.+++|.|+...|-||+... ....++.+.+|+.||.++|..+|.
T Consensus 434 ~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------~~~~~l~~~~k~~DptRpV~y~~~ 490 (1027)
T PRK09525 434 LPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------ANHDALYRWIKSNDPSRPVQYEGG 490 (1027)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC--------hhHHHHHHHHHhhCCCCcEEECCC
Confidence 456777788999999999999999999998542 123566778999999999999974
No 22
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.056 Score=58.35 Aligned_cols=103 Identities=23% Similarity=0.507 Sum_probs=74.1
Q ss_pred cCCCCceeeccC--C--CCceeeccCCCC---CCccccCCceeeeeccceeEeeccCCcccEEeeecC-CCCCceEEEec
Q 015062 260 HPATGLCVQRKS--F--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DCGSTWEIISD 331 (414)
Q Consensus 260 ~~~tg~c~~~~~--~--~~~l~~~~c~~~---~~W~~~~~~~l~~~~~~~cl~a~~~g~~~~~~~~c~-~~~~~W~~~s~ 331 (414)
...|++|++... . ..++.+.+|.+. |-|+||.+++|+. ...|++....|. +.+ ..|. ..+|.|..-.+
T Consensus 460 ~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~--~~~cl~~~~~~~-v~l-~~C~~~~~q~w~~~~~ 535 (578)
T KOG3736|consen 460 NGNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRI--GDLCLDVDDAGK-VTL-YDCHKMGNQLWHYDKD 535 (578)
T ss_pred cCCcchhhhhhchhccCCCcceEecCCCccccccccccCCcceEE--CCEEeccccCCc-eEE-EecccccccceEEcCC
Confidence 377899998844 1 246889999875 6999999999986 449998765555 666 8997 33899999888
Q ss_pred CccEEeeecCCCceeEEEecCCC-ceeeeeeeEeCCCCCCCccCceE
Q 015062 332 SKMHLSSKADNGTTVCLDVDSSN-TIVTNTCKCLSRDKTCDPASQWF 377 (414)
Q Consensus 332 s~~~~~~~~~~~~~lcld~~~~~-~ivt~~c~c~~~~~~c~p~~qwf 377 (414)
+. | -+.+++.||++..+. .++-..|.|- +|..||.
T Consensus 536 ~~--i---~~~~sg~CL~~~~~~~~~~l~~c~~~------~~~Q~W~ 571 (578)
T KOG3736|consen 536 GT--L---YHRNSGKCLEAAVDKNGLILVACDPS------DPTQQWL 571 (578)
T ss_pred Cc--e---EcCCCCccccccCCCCCceEeecCCC------CCcceEE
Confidence 44 2 233688999999643 2444777664 4567884
No 23
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.97 E-value=0.3 Score=56.66 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcC
Q 015062 32 DLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 94 (414)
Q Consensus 32 d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG 94 (414)
+.+.+-.+.|.+|++++|.|+...|-||.... ..++++++.||+.||.++|..+|
T Consensus 422 ~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g--------~~~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 422 KVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG--------CNIRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECccCcccc--------HHHHHHHHHHHHhCCCceEEeCC
Confidence 45566678899999999999999999998432 12357788999999999999887
No 24
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=94.08 E-value=1 Score=46.48 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhCCCc-eEEEEeccCCCCCCC----C-----ChhhHHHHHHHHHHHHHhcCCCcEEEE-cCccCCC
Q 015062 31 PDLWIKGLTKMATIFNGVR-NVVGMSLRNELRGPK----Q-----NVKDWYRYMQLGAEAVHAANPEVLVIL-SGLNFDK 99 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~p-nViG~dL~NEP~~~~----~-----n~~dW~~~~~~~~~aIr~~dP~~LIiV-eG~~~~~ 99 (414)
.++|+.++..++++|+..- +|--++.+|||.-.+ + +..+-.+.+..+..++++...+..|.+ |...|..
T Consensus 153 y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~ 232 (384)
T PF14587_consen 153 YDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEY 232 (384)
T ss_dssp HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHH
Confidence 5899999999999995532 466689999997653 1 234556777888888999999877666 3333311
Q ss_pred -------------cchhh-hcc-ccccc-CCC-cEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhc--CC
Q 015062 100 -------------DLSFV-RNQ-AVNLT-FTG-KLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQ--GW 160 (414)
Q Consensus 100 -------------dLs~v-~~~-Pv~l~-~~~-klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~--g~ 160 (414)
.+..+ ..+ +..+. ..+ .-+.+.|-|-... ..+.+...-......+.+. ++
T Consensus 233 l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~-----------~~~~l~~~R~~~~~~~~~~~~~~ 301 (384)
T PF14587_consen 233 LYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDS-----------PWDDLRDIRKQLADKLDKYSPGL 301 (384)
T ss_dssp GS---S-TTS---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SS-----------SHHHHHHHHHHHHHHHHTTSS--
T ss_pred HhhccCCchhhhhhHHhhcCCCchhhhhccccchhheeecccccCC-----------CHHHHHHHHHHHHHHHHhhCcCC
Confidence 11111 000 11110 111 2367889884221 1122333222233344446 89
Q ss_pred CEEEeccCcCCCCC------CccchHHHHHHHHHH--------HHCCCcEEEeccCcccccccc
Q 015062 161 PLFVSEFGADLRGN------NVNDNRYLNCFFGVA--------AELDWDWALWTLVGSYYLREG 210 (414)
Q Consensus 161 Pv~lGEFG~~~~~~------~~~~~~~~~~~l~~l--------~e~~i~Wa~Wa~~Gsyy~r~g 210 (414)
.++.+||...-+.. .......|++-|-++ ..+--+|.||..-+.|-+++|
T Consensus 302 ~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~~~ykdg 365 (384)
T PF14587_consen 302 KYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVARVIHNDLTYANASSWQWWTAISPYDYKDG 365 (384)
T ss_dssp EEEE----S----TTT-SSS-HHHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEESS--SSS
T ss_pred ceeeeeeeeccCCcccccCCCcccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhccccccCc
Confidence 99999998754421 111123344333322 234457999987655544554
No 25
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=92.49 E-value=1.1 Score=44.96 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=63.7
Q ss_pred CEEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCC--ChhhHHHHHHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ--NVKDWYRYMQLGA 78 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dgn~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~--n~~dW~~~~~~~~ 78 (414)
|||||+-... ++-+..+.+ ..++. .+.+-...+...|++++|++||-.=||-..... ......+++.|-.
T Consensus 94 Yvi~Dl~~p~----~sI~r~~P~---~sw~~-~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~ 165 (314)
T PF03198_consen 94 YVILDLNTPN----GSINRSDPA---PSWNT-DLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDM 165 (314)
T ss_dssp EEEEES-BTT----BS--TTS---------H-HHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHH
T ss_pred EEEEecCCCC----ccccCCCCc---CCCCH-HHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHH
Confidence 7999998552 222222210 13433 556667788999999999999999999765321 2344555555555
Q ss_pred HH-HHhcCCCcEEEEc--CccCCCcchhhhcccccccC--CCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHH
Q 015062 79 EA-VHAANPEVLVILS--GLNFDKDLSFVRNQAVNLTF--TGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSG 153 (414)
Q Consensus 79 ~a-Ir~~dP~~LIiVe--G~~~~~dLs~v~~~Pv~l~~--~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~g 153 (414)
++ |++...+. |-|+ ...- .+++.....=+.-.. ..--.|.+-.|.+=+.. +.- ...+.+...
T Consensus 166 K~Yi~~~~~R~-IPVGYsaaD~-~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~S--------tf~---~SGy~~l~~ 232 (314)
T PF03198_consen 166 KAYIKSKGYRS-IPVGYSAADD-AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDS--------TFE---TSGYDRLTK 232 (314)
T ss_dssp HHHHHHSSS-----EEEEE----TTTHHHHHHHTTBTT-----S-EEEEE----SS----------HH---HHSHHHHHH
T ss_pred HHHHHhcCCCC-CceeEEccCC-hhHHHHHHHHhcCCCcccccceeeeccceecCCC--------ccc---cccHHHHHH
Confidence 55 55555433 4443 2111 111111000000000 11125666666543211 100 112333322
Q ss_pred HHHhcCCCEEEeccCcCCCC
Q 015062 154 FLLEQGWPLFVSEFGADLRG 173 (414)
Q Consensus 154 fl~~~g~Pv~lGEFG~~~~~ 173 (414)
.+....+|+|++|||.....
T Consensus 233 ~f~~y~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 233 EFSNYSVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHTT-SS-EEEEEE---SSS
T ss_pred HhhCCCCCeEEcccCCCCCC
Confidence 33346899999999998653
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=91.99 E-value=0.51 Score=46.82 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 27 QYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 27 ~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
..+++|...+..+.|++||+..|||| ..|-||=........+|. ++++.|++.+|..|+.+=...
T Consensus 124 ~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~~~~~~~~~w~----~~~~~i~~~dp~~L~T~H~~~ 188 (289)
T PF13204_consen 124 NIMPPENAERYGRYVVARYGAYPNVI-WILGGDYFDTEKTRADWD----AMARGIKENDPYQLITIHPCG 188 (289)
T ss_dssp TSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS--TTSSHHHHH----HHHHHHHHH--SS-EEEEE-B
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccCCCCcCHHHHH----HHHHHHHhhCCCCcEEEeCCC
Confidence 56889999999999999999999998 889999811112445565 456699999998888774443
No 27
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.13 Score=53.00 Aligned_cols=92 Identities=24% Similarity=0.523 Sum_probs=60.8
Q ss_pred CceeeccC-CC-CceeeccCCCC---CCccc--cCCceeeeeccceeEeecc--CCcccEEeeecCCCCCceEEEecCcc
Q 015062 264 GLCVQRKS-FL-DPLTLGPCTES---EAWSY--TPHKTISLKGAYFCLQAKH--VGKPAKLGIICTDCGSTWEIISDSKM 334 (414)
Q Consensus 264 g~c~~~~~-~~-~~l~~~~c~~~---~~W~~--~~~~~l~~~~~~~cl~a~~--~g~~~~~~~~c~~~~~~W~~~s~s~~ 334 (414)
-+|++..+ +. +.+.++.|-++ ++|.+ +....+ ....+||.+.. .|+|++| .-|.....+|+.+-.+.
T Consensus 441 ~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~~~--~~~elCL~v~~~~pg~~v~l-~~C~~~e~~q~~v~~~~- 516 (559)
T KOG3738|consen 441 DNCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQLI--THRELCLAVGSNTPGSPVAL-VPCGNNETKQRWVELGG- 516 (559)
T ss_pred chhhhhhhcccccCcceeecccCCCCcchhhhhhhhhHH--HHHhhhheeecCCCCCeEEE-EecCCCCCceEEEecCC-
Confidence 35888733 22 33789999877 79999 443322 36789999887 4899999 78984444555554443
Q ss_pred EEeeecCCCceeEEEecCCC--ceeeeeee
Q 015062 335 HLSSKADNGTTVCLDVDSSN--TIVTNTCK 362 (414)
Q Consensus 335 ~~~~~~~~~~~lcld~~~~~--~ivt~~c~ 362 (414)
|+ ...++.||||...-| -|.-+.|.
T Consensus 517 ~l---~h~~s~KOGd~~~~g~~~l~~~~C~ 543 (559)
T KOG3738|consen 517 HL---LHAGSHLCLDNPLKGRWLLEVSTCE 543 (559)
T ss_pred ch---hcccccceeccccCCCcceeecccc
Confidence 32 344899999998544 35555554
No 28
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=90.70 E-value=5.2 Score=39.45 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=80.0
Q ss_pred HHHHHh---CCCceEEEEeccCCCCCC-CCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcchhhhcccccccCCC
Q 015062 40 KMATIF---NGVRNVVGMSLRNELRGP-KQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLTFTG 115 (414)
Q Consensus 40 ~iA~ry---k~~pnViG~dL~NEP~~~-~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~v~~~Pv~l~~~~ 115 (414)
+++..| .+.+.|..+-+=||.--. .....+.-.++.+.-.++.+++-+.-|.- --.|. .+..+|.-....+
T Consensus 120 til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T-~dsw~----~~~~np~l~~~SD 194 (305)
T COG5309 120 TILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT-VDSWN----VVINNPELCQASD 194 (305)
T ss_pred HHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee-cccce----eeeCChHHhhhhh
Confidence 555555 557889999999996433 33567788888877777776654443211 00110 1111232112234
Q ss_pred cEEEEEeecCCCCCCCccCCCCCcchhhHH-HHHHHHHHHHHhcCCCEEEeccCcCCCCCCc--------cchHHHHHHH
Q 015062 116 KLVFEAHWYGFTDGQAWVDGNPNQVCGRVV-DNVMRLSGFLLEQGWPLFVSEFGADLRGNNV--------NDNRYLNCFF 186 (414)
Q Consensus 116 klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~-~~~~~~~gfl~~~g~Pv~lGEFG~~~~~~~~--------~~~~~~~~~l 186 (414)
-++--+|.| |..++....-..+. ..+++-.. +...+.+++|||-|.+.+|+.. +...+++.++
T Consensus 195 fia~N~~aY-------wd~~~~a~~~~~f~~~q~e~vqs-a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~ 266 (305)
T COG5309 195 FIAANAHAY-------WDGQTVANAAGTFLLEQLERVQS-ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEIL 266 (305)
T ss_pred hhhcccchh-------ccccchhhhhhHHHHHHHHHHHH-hcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHH
Confidence 455556666 22221111111111 11222110 0113489999999999876432 2467889999
Q ss_pred HHHHHCCCcEEE
Q 015062 187 GVAAELDWDWAL 198 (414)
Q Consensus 187 ~~l~e~~i~Wa~ 198 (414)
.-|++.|++-++
T Consensus 267 ~~~~~~G~d~fv 278 (305)
T COG5309 267 NALRSCGYDVFV 278 (305)
T ss_pred hhhhccCccEEE
Confidence 999999998654
No 29
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=0.87 Score=49.38 Aligned_cols=64 Identities=23% Similarity=0.429 Sum_probs=48.7
Q ss_pred ceeeccCCCCceeeccC--CCCCCccccCCceeeeeccceeEeeccCCcccEEeeecC--CCCCceEEEe
Q 015062 265 LCVQRKSFLDPLTLGPC--TESEAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEIIS 330 (414)
Q Consensus 265 ~c~~~~~~~~~l~~~~c--~~~~~W~~~~~~~l~~~~~~~cl~a~~~g~~~~~~~~c~--~~~~~W~~~s 330 (414)
.|..+..... +.+.+| .+++.|.|..++.|.-+.+++||++...+..+.+ ..|. ++.|+|.+..
T Consensus 507 ~cl~~~~~~~-v~l~~C~~~~~q~w~~~~~~~i~~~~sg~CL~~~~~~~~~~l-~~c~~~~~~Q~W~~~~ 574 (578)
T KOG3736|consen 507 LCLDVDDAGK-VTLYDCHKMGNQLWHYDKDGTLYHRNSGKCLEAAVDKNGLIL-VACDPSDPTQQWLFEH 574 (578)
T ss_pred EEeccccCCc-eEEEecccccccceEEcCCCceEcCCCCccccccCCCCCceE-eecCCCCCcceEEEEe
Confidence 6777632213 889999 5567999998898888899999999998766555 5555 5589999864
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=85.26 E-value=2.8 Score=42.32 Aligned_cols=59 Identities=17% Similarity=0.411 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCC--ChhhHHH------HHHHHHHHHHhcCCCcEEEE
Q 015062 32 DLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ--NVKDWYR------YMQLGAEAVHAANPEVLVIL 92 (414)
Q Consensus 32 d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~--n~~dW~~------~~~~~~~aIr~~dP~~LIiV 92 (414)
+...+....+..|||+. |+.-|+.|||..... -.+.|+. +++.+-..-|+++|+...++
T Consensus 125 ~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 125 KMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHhccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 45555677899999998 788999999977321 1245664 66777777899999988887
No 31
>TIGR03356 BGL beta-galactosidase.
Probab=84.58 E-value=3.9 Score=42.91 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred EEEecCC-CCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCC-------------CCh
Q 015062 2 VILDNHI-SKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-------------QNV 67 (414)
Q Consensus 2 VILD~H~-~~p~wcc~~~dgn~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~-------------~n~ 67 (414)
+|+++|- .-|.|-- +.+||.. +.+ .+.|++.++.+++||++.... ..++|||.... .+.
T Consensus 110 pivtL~Hfd~P~~l~---~~gGw~~-~~~-~~~f~~ya~~~~~~~~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 110 PFVTLYHWDLPQALE---DRGGWLN-RDT-AEWFAEYAAVVAERLGDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred eEEeeccCCccHHHH---hcCCCCC-hHH-HHHHHHHHHHHHHHhCCcCCE--EEEecCcceecccchhhccCCCCCccH
Confidence 5777753 3354421 1244444 434 699999999999999996443 48999996320 011
Q ss_pred -------hhHHHHHHHHHHHHHhcCCCcEE
Q 015062 68 -------KDWYRYMQLGAEAVHAANPEVLV 90 (414)
Q Consensus 68 -------~dW~~~~~~~~~aIr~~dP~~LI 90 (414)
..-..+.-++++++|+..|+..|
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~I 212 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQV 212 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 12234557788999999997443
No 32
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=84.26 E-value=1.3 Score=45.25 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEEeccCCCCC
Q 015062 31 PDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 62 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~ 62 (414)
.+.+.++.+.||+||+++|+|+++.+-|||..
T Consensus 109 r~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 109 REYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred HHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 46677889999999999999999999999966
No 33
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.84 E-value=4 Score=43.29 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEE
Q 015062 11 PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLV 90 (414)
Q Consensus 11 p~wcc~~~dgn~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LI 90 (414)
..|||.--- + =.|+-| ++-=-.+++.+.+.|++..|+.+.|.+||--.+...++--...+.++.++++++|++.+-
T Consensus 203 s~~~C~l~v-~--P~dplF-~eIgs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVW 278 (666)
T KOG2233|consen 203 SRYSCMLLV-S--PFDPLF-QEIGSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVW 278 (666)
T ss_pred cceeeeEEc-c--CCcchH-HHHHHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEE
Confidence 578886321 1 012334 455566789999999999999999999997766444444455667777889999999999
Q ss_pred EEcCccCCCc
Q 015062 91 ILSGLNFDKD 100 (414)
Q Consensus 91 iVeG~~~~~d 100 (414)
++.|=.+..|
T Consensus 279 llQgWlF~~d 288 (666)
T KOG2233|consen 279 LLQGWLFTYD 288 (666)
T ss_pred eeecceeecC
Confidence 9988665443
No 34
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=80.74 E-value=1.5 Score=44.35 Aligned_cols=133 Identities=21% Similarity=0.297 Sum_probs=45.2
Q ss_pred eEEEEeccCCCCCCC----CChhhHHHHH---HHHHHHHHh-cCCCcEEEEcCccCCCc-ch-hhhcccccccCCCcEEE
Q 015062 50 NVVGMSLRNELRGPK----QNVKDWYRYM---QLGAEAVHA-ANPEVLVILSGLNFDKD-LS-FVRNQAVNLTFTGKLVF 119 (414)
Q Consensus 50 nViG~dL~NEP~~~~----~n~~dW~~~~---~~~~~aIr~-~dP~~LIiVeG~~~~~d-Ls-~v~~~Pv~l~~~~klVY 119 (414)
+|.+.||-|||.+.. .+..+..+-. +++++.|.+ +-+.-+|+-.|..++.+ ++ ++....-. . ==+.
T Consensus 165 ~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~--~--vD~v 240 (319)
T PF03662_consen 165 NIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPG--V--VDAV 240 (319)
T ss_dssp GG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT------SEE
T ss_pred CccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCC--c--cCEE
Confidence 466899999997742 1333333322 233344433 23444555555444433 22 22221000 0 1278
Q ss_pred EEeecCCCCCCCccC---CCCCcchhhHHHHHHHHHHHHHh--cCCCEEEeccCcCCCC-CCccchHHHHHHH
Q 015062 120 EAHWYGFTDGQAWVD---GNPNQVCGRVVDNVMRLSGFLLE--QGWPLFVSEFGADLRG-NNVNDNRYLNCFF 186 (414)
Q Consensus 120 s~H~Y~p~~~~~W~~---~~~~~~~~~~~~~~~~~~gfl~~--~g~Pv~lGEFG~~~~~-~~~~~~~~~~~~l 186 (414)
+.|.|.......-.. .-....-+.+...+......+.+ .+.|++|||-|..+.+ .+....+|+..++
T Consensus 241 T~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~Fw 313 (319)
T PF03662_consen 241 TWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFW 313 (319)
T ss_dssp EEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHH
T ss_pred EEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHH
Confidence 999995321100000 00001111222222222222222 5789999999998754 3333456666653
No 35
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=79.07 E-value=2.9 Score=37.72 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=40.7
Q ss_pred eccceeEeeccCCcccEEeeecCCCC--CceEEEecC--ccEEeeecCCCceeEEEecCCC------ceeeeeeeEeCCC
Q 015062 298 KGAYFCLQAKHVGKPAKLGIICTDCG--STWEIISDS--KMHLSSKADNGTTVCLDVDSSN------TIVTNTCKCLSRD 367 (414)
Q Consensus 298 ~~~~~cl~a~~~g~~~~~~~~c~~~~--~~W~~~s~s--~~~~~~~~~~~~~lcld~~~~~------~ivt~~c~c~~~~ 367 (414)
..++.||.+.+.|.-..- .|...+ |.|+++--+ .+.|.+ .++..||-...++ .|-...| ...
T Consensus 59 ~~~~~CL~~~~~G~~~~~--~C~~~~~~q~F~iiPtttgAVQIks---~~~~~Cl~~~~~~~~~~~~~i~l~~C---d~~ 130 (150)
T PF03498_consen 59 PKTGTCLAAYGNGVFHYK--SCDQDNLEQVFSIIPTTTGAVQIKS---LSTGECLQTFNNSRTPIYYSIGLTPC---DKS 130 (150)
T ss_dssp TTTSEEEEEETTCEEEE----TTTCHGHH-EEEEEBTTS-EEEEE---TTT--EEEE-STTSS-SSEEEEEE------S-
T ss_pred CCCCcceeecCCCeEeec--ccCCCChhceEEEEEcCCCcEEEEe---cCCCceEEecCCCceeEEeeEEeeeC---CCc
Confidence 346669999888864332 299444 999996555 446655 3677999998654 4555777 222
Q ss_pred CCCCccCceEEE
Q 015062 368 KTCDPASQWFKL 379 (414)
Q Consensus 368 ~~c~p~~qwf~~ 379 (414)
..=+...|||=.
T Consensus 131 ~~~~l~~lw~it 142 (150)
T PF03498_consen 131 KEINLDQLWFIT 142 (150)
T ss_dssp EEETGGGEEEEE
T ss_pred CCCCHHHcEEEc
Confidence 233667788743
No 36
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=77.64 E-value=5.2 Score=40.60 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcC
Q 015062 27 QYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 94 (414)
Q Consensus 27 ~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG 94 (414)
+.| .+.-..+.++.-+.|. ..++.+.|++||-..+...........+++.+++.++||+.+=++.|
T Consensus 153 plF-~~i~~~F~~~q~~~yG-~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 153 PLF-AEIAKLFYEEQIKLYG-TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp -HH-HHHHHHHHHHHHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred chH-HHHHHHHHHHHHHhcC-CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 344 2444556777788887 88899999999966553333457788888999999999999999988
No 37
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=77.59 E-value=7.4 Score=37.75 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhCCC---ceEEEEeccCCCCC---------C-CCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 31 PDLWIKGLTKMATIFNGV---RNVVGMSLRNELRG---------P-KQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~---pnViG~dL~NEP~~---------~-~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
.++|+ ..|-++|... ..|-+|.|=|||.- + ..+.++......+.++|||+++|...|+= ...|
T Consensus 106 ~~ewV---~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~G-P~~w 181 (239)
T PF12891_consen 106 MDEWV---NYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFG-PVEW 181 (239)
T ss_dssp HHHHH---HHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEE-EEE-
T ss_pred HHHHH---HHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEee-chhh
Confidence 45665 3455667543 45888999999932 1 11345677777888999999999988764 3344
Q ss_pred C
Q 015062 98 D 98 (414)
Q Consensus 98 ~ 98 (414)
+
T Consensus 182 g 182 (239)
T PF12891_consen 182 G 182 (239)
T ss_dssp S
T ss_pred c
Confidence 3
No 38
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=75.44 E-value=15 Score=30.74 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=38.4
Q ss_pred eeeec-cceeEeeccCCcccEEeeecC-CCCCceEEEecCccEEeeecCCCceeEEEecCCCceee
Q 015062 295 ISLKG-AYFCLQAKHVGKPAKLGIICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTIVT 358 (414)
Q Consensus 295 l~~~~-~~~cl~a~~~g~~~~~~~~c~-~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~~~~ivt 358 (414)
++|+. ++++|.++..|..+. .+... ++.+.|++.-.+...++.++.+|.+|+++ .+|.|..
T Consensus 4 v~Lrs~~gkyl~~~~~g~~v~-a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~--~~g~l~~ 66 (119)
T cd00257 4 VVLRSVNGRYLSAEAGGDKVD-ANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSAD--SDGGVQL 66 (119)
T ss_pred EEEEEcCCCEEEEeccCCEEE-EcCccCCCceEEEEEECCCCeEEEEECCCcEEEEE--CCCCEEe
Confidence 44444 688999998884222 23333 45688998665444455566789999886 3555433
No 39
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=71.38 E-value=49 Score=27.64 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCccccC--Cceeeee-ccceeEeeccCCcccEEeeecCCCCCceEEEecCccEEeeecCCCceeEEEecCCCceeee
Q 015062 285 EAWSYTP--HKTISLK-GAYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTIVTN 359 (414)
Q Consensus 285 ~~W~~~~--~~~l~~~-~~~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~~~~ivt~ 359 (414)
+.|.... ++.+.|+ .+++.|.+..+|. +..... -++..+|++.-.+..+++.+..+|.+|+.+. +|.+..+
T Consensus 34 e~F~l~~~~~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~--~g~l~~~ 107 (119)
T cd00257 34 ETFTLEFDNTGKYALRSHDGKYLSADSDGG-VQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDG--SGTLKAS 107 (119)
T ss_pred eEEEEEECCCCeEEEEECCCcEEEEECCCC-EEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecC--CCeEEEe
Confidence 5566643 4444333 4778999888885 344333 4667788875444334566777999999875 5654433
No 40
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=66.95 E-value=57 Score=32.89 Aligned_cols=135 Identities=13% Similarity=0.207 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCceEEEEeccCCCCCCCC-ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcchhhhcccccccCCCc
Q 015062 38 LTKMATIFNGVRNVVGMSLRNELRGPKQ-NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLTFTGK 116 (414)
Q Consensus 38 W~~iA~ryk~~pnViG~dL~NEP~~~~~-n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~v~~~Pv~l~~~~k 116 (414)
...|-+.-+.+|.|+|+|++++-..... ...+. ..++++++..+ -. .=
T Consensus 42 ~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~~~-~~~~~a~~~~~---~G---------------------------gI 90 (311)
T PF02156_consen 42 RSDVKDVTGKYPAVRGFDFGFWYSPSNNADGVDF-DIIEEAIEWWK---RG---------------------------GI 90 (311)
T ss_dssp HHHHHHHHSS-BSEEEEEEEETSCCSSGGGGBCH-TTHHHHHHHHH---TT----------------------------E
T ss_pred HHHHHHHhCCCCeEEEeecccccCCccccccCch-HHHHHHHHHHH---CC---------------------------CE
Confidence 4567777889999999999993211110 00011 11233332222 11 12
Q ss_pred EEEEEeecCCCCCC--CccCCCC------------CcchhhHHHHHHHHHHHHHh---cCCCEEE---eccCcCC--CCC
Q 015062 117 LVFEAHWYGFTDGQ--AWVDGNP------------NQVCGRVVDNVMRLSGFLLE---QGWPLFV---SEFGADL--RGN 174 (414)
Q Consensus 117 lVYs~H~Y~p~~~~--~W~~~~~------------~~~~~~~~~~~~~~~gfl~~---~g~Pv~l---GEFG~~~--~~~ 174 (414)
+-++.|++.|.... .|..... ...+..+.+.+++.+.++.+ .++||++ =|+.+.- -+.
T Consensus 91 vT~sWH~~~P~~~~~~~f~~~~t~~~~~~~l~~~~t~~~~~~~~~ld~iA~~l~~l~~~~vPVl~Rp~HE~nG~WfwWg~ 170 (311)
T PF02156_consen 91 VTFSWHWNNPSTGGGSAFYTEATTFDISKILTGGPTAEYEAFKADLDRIADFLKQLKDAGVPVLFRPFHEMNGGWFWWGA 170 (311)
T ss_dssp EEEEEE--BTTTSSS-STTSTSTCHHHHHHCCTTTSHCHHHHHHHHHHHHHHHHHHHCTTS-EEEEESTSTTSSSSTTST
T ss_pred EEEEecCCCCCCCCccccccCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeehhhcCCCccccCC
Confidence 45677777665321 2221110 12344566666666666643 7899985 4555422 122
Q ss_pred C----c-cchHHHHHHHHHHHH-CCCcEEEeccCc
Q 015062 175 N----V-NDNRYLNCFFGVAAE-LDWDWALWTLVG 203 (414)
Q Consensus 175 ~----~-~~~~~~~~~l~~l~e-~~i~Wa~Wa~~G 203 (414)
. + .-.+..+.+.+++++ +++.-..|.+++
T Consensus 171 ~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~ 205 (311)
T PF02156_consen 171 KGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSP 205 (311)
T ss_dssp TSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-E
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCceEEEEecC
Confidence 1 1 124557778899875 788888887765
No 41
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=66.12 E-value=1.2e+02 Score=31.54 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhCCC-ceEEEEeccCCCCCCC-C-----ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC-Ccch-
Q 015062 32 DLWIKGLTKMATIFNGV-RNVVGMSLRNELRGPK-Q-----NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD-KDLS- 102 (414)
Q Consensus 32 d~~~~~W~~iA~ryk~~-pnViG~dL~NEP~~~~-~-----n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~-~dLs- 102 (414)
.+|.+++......+|++ -|+.++++-|||.-.. . ..++-.+.|.+ -.+.++...-||+---.++ -+++
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~q---yl~si~~~~rV~~pes~~~~~~~~d 225 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQ---YLASINAEMRVIIPESFKDLPNMSD 225 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHH---hhhhhccccEEecchhccccccccc
Confidence 46777777777777775 4688999999996641 1 22334444443 3344444555555332222 1222
Q ss_pred hhhcccccccCCCcEEEEEeecCCCCC-CCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcCCCCCCccchHH
Q 015062 103 FVRNQAVNLTFTGKLVFEAHWYGFTDG-QAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRY 181 (414)
Q Consensus 103 ~v~~~Pv~l~~~~klVYs~H~Y~p~~~-~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~~~~~~~~~~~~ 181 (414)
.+-++|-.+ .+=-+...|+|+-.+. ++. ..+.+ .-.|.-||++|-=....+++-.++..
T Consensus 226 p~lnDp~a~--a~~~ilg~H~Ygg~v~~~p~-----------------~lak~-~~~gKdlwmte~y~~esd~~s~dr~~ 285 (433)
T COG5520 226 PILNDPKAL--ANMDILGTHLYGGQVSDQPY-----------------PLAKQ-KPAGKDLWMTECYPPESDPNSADREA 285 (433)
T ss_pred ccccCHhHh--cccceeEeeecccccccchh-----------------hHhhC-CCcCCceEEeecccCCCCCCcchHHH
Confidence 112233332 3445889999986553 110 00000 01367899999877766654433322
Q ss_pred HH---HHHHHHHHCCC-cEEEeccCccc
Q 015062 182 LN---CFFGVAAELDW-DWALWTLVGSY 205 (414)
Q Consensus 182 ~~---~~l~~l~e~~i-~Wa~Wa~~Gsy 205 (414)
+. .++.-+-+-+. +..+|-+..+|
T Consensus 286 ~~~~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 286 LHVALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred HHHHHHHHhhccccCccEEEEEEEeecc
Confidence 22 22222223343 57888776443
No 42
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=65.66 E-value=77 Score=34.09 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhCCC-ceEEEEeccCCCCCCC---C--ChhhHH-----HHHH-HHHHHHHhcCC--CcEEEE-cCc
Q 015062 31 PDLWIKGLTKMATIFNGV-RNVVGMSLRNELRGPK---Q--NVKDWY-----RYMQ-LGAEAVHAANP--EVLVIL-SGL 95 (414)
Q Consensus 31 ~d~~~~~W~~iA~ryk~~-pnViG~dL~NEP~~~~---~--n~~dW~-----~~~~-~~~~aIr~~dP--~~LIiV-eG~ 95 (414)
-+.|++.+.+..+.|+.+ =+|.++.+-|||.... . ..-.|- ..+. .++.++++.++ +.-|++ +-.
T Consensus 203 ~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n 282 (496)
T PF02055_consen 203 YQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHN 282 (496)
T ss_dssp HHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 368999999999999765 3588999999997420 1 111232 2232 36778999988 665555 322
Q ss_pred cCCCc-c-hhhhcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcCCCC
Q 015062 96 NFDKD-L-SFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRG 173 (414)
Q Consensus 96 ~~~~d-L-s~v~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~~~~ 173 (414)
.+... . ..+-.+|-...+ =-.-.+|+|+-... ...+. ...+. | -+..++.+|-......
T Consensus 283 ~~~~~~~~~~il~d~~A~~y--v~GiA~HwY~g~~~-----------~~~l~-~~h~~--~---P~k~l~~TE~~~g~~~ 343 (496)
T PF02055_consen 283 RDNLPDYADTILNDPEAAKY--VDGIAFHWYGGDPS-----------PQALD-QVHNK--F---PDKFLLFTEACCGSWN 343 (496)
T ss_dssp GGGTTHHHHHHHTSHHHHTT--EEEEEEEETTCS-H-----------CHHHH-HHHHH--S---TTSEEEEEEEESS-ST
T ss_pred CcccchhhhhhhcChhhHhh--eeEEEEECCCCCch-----------hhHHH-HHHHH--C---CCcEEEeeccccCCCC
Confidence 22111 0 011112211111 13678999974321 11111 11111 0 2467999997443221
Q ss_pred CC----cc----chHHHHHHHHHHHHCCCcEEEecc
Q 015062 174 NN----VN----DNRYLNCFFGVAAELDWDWALWTL 201 (414)
Q Consensus 174 ~~----~~----~~~~~~~~l~~l~e~~i~Wa~Wa~ 201 (414)
.+ .. ..+|...++..+...--+|..|.+
T Consensus 344 ~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl 379 (496)
T PF02055_consen 344 WDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNL 379 (496)
T ss_dssp TS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEES
T ss_pred cccccccccHHHHHHHHHHHHHHHHhhceeeeeeee
Confidence 11 10 134667777777655458999987
No 43
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=64.82 E-value=16 Score=31.05 Aligned_cols=42 Identities=24% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC
Q 015062 47 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 98 (414)
Q Consensus 47 ~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~ 98 (414)
..|.++||..+..- . ..+.++++.||+..|+..|+++|..-.
T Consensus 38 ~~pdiv~~S~~~~~---------~-~~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 38 LKPDVVGISLMTSA---------I-YEALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred cCCCEEEEeecccc---------H-HHHHHHHHHHHHHCCCCEEEECCcchh
Confidence 68899999975331 2 257788899999999999999997643
No 44
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.07 E-value=14 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC
Q 015062 47 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 98 (414)
Q Consensus 47 ~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~ 98 (414)
.+|.++++.....+ -...+.+.++.+|+.+|+..|+++|..-.
T Consensus 50 ~~pd~V~iS~~~~~---------~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 50 ERPDVVGISVSMTP---------NLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp TTCSEEEEEESSST---------HHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred CCCcEEEEEccCcC---------cHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 37778888876333 23456778888999999999999998754
No 45
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.65 E-value=7.6 Score=40.30 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=67.1
Q ss_pred eeeecCCCCceeeccCCC--CceeeccCCCC---CCccccCCceeeeeccceeEeeccCCcccEEeeecC-CC-CCceEE
Q 015062 256 KVIYHPATGLCVQRKSFL--DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DC-GSTWEI 328 (414)
Q Consensus 256 ~~~~~~~tg~c~~~~~~~--~~l~~~~c~~~---~~W~~~~~~~l~~~~~~~cl~a~~~g~~~~~~~~c~-~~-~~~W~~ 328 (414)
..+..++|+-|++..+.+ ..+.+++|-+. +--..+.+|+| ..+..||+|.|.+ +. .+.|. +. +..|+-
T Consensus 482 GE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl--~qge~CltAdg~~--i~-~~hC~lgtv~g~WqY 556 (603)
T KOG3737|consen 482 GEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQL--MQGEQCLTADGSK--IM-ITHCNLGTVKGEWQY 556 (603)
T ss_pred hhccCcccchhHHhcCCCCCCccccccccCCCCceEEEeccccch--hccceeeecCCce--EE-EEEeecccccCceeh
Confidence 578889999999995542 45789999665 44555555655 3577899988764 33 37898 44 569998
Q ss_pred EecCccEEeeecCCCceeEEEecCCCceee-eee
Q 015062 329 ISDSKMHLSSKADNGTTVCLDVDSSNTIVT-NTC 361 (414)
Q Consensus 329 ~s~s~~~~~~~~~~~~~lcld~~~~~~ivt-~~c 361 (414)
.-+.+-. ...-+..|||+...+.-|+ ..|
T Consensus 557 ~~~tk~~----~H~~~~kC~~~se~~~qv~l~~C 586 (603)
T KOG3737|consen 557 FKNTKRF----THIPSGKCLDRSEVLHQVFLSNC 586 (603)
T ss_pred hhcchhe----eeccccccccccchhheeeeccc
Confidence 7777632 2224789999987665444 554
No 46
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=57.85 E-value=76 Score=31.60 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH--HhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCc
Q 015062 24 FGDQYFNPDLWIKGLTKMAT--IFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKD 100 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~--ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~d 100 (414)
|.-....+|++.++.+-+.+ .......|+ .|.-++.. =.+.+.+++.+||+.+|+.++++..+-.+.+
T Consensus 48 ~~g~v~~~e~l~~~l~~l~~~~~~~~~davl--------tGYlgs~~-qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~g 117 (281)
T COG2240 48 WTGIVMPPEQLADLLNGLEAIDKLGECDAVL--------TGYLGSAE-QVRAIAGIVKAVKEANPNALYLCDPVMGDPG 117 (281)
T ss_pred CCCcCCCHHHHHHHHHHHHhcccccccCEEE--------EccCCCHH-HHHHHHHHHHHHhccCCCeEEEeCCcccCCC
Confidence 44445778888888888887 555666665 23333332 3456677888999999999999999887765
No 47
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=55.64 E-value=2.4e+02 Score=28.60 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHh--CCCceEEEEeccC------CCCCCC-CChhhHHHHHHHHHHHHHhcCCCcEEEE-cCccCCCcc
Q 015062 32 DLWIKGLTKMATIF--NGVRNVVGMSLRN------ELRGPK-QNVKDWYRYMQLGAEAVHAANPEVLVIL-SGLNFDKDL 101 (414)
Q Consensus 32 d~~~~~W~~iA~ry--k~~pnViG~dL~N------EP~~~~-~n~~dW~~~~~~~~~aIr~~dP~~LIiV-eG~~~~~dL 101 (414)
.+|.+++..-..+. +|...|. .|.+. |..... ....+-..+..++++.+|+..|+.+||. .|...-...
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvf-LD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~ 221 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVY-LDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDD 221 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-eccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhcc
Confidence 45655554444454 6666554 45443 332211 1234566677778888899999988875 343321110
Q ss_pred hhhhcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHHHHHHHhcCCCEEEeccCcCCCCCCccchHH
Q 015062 102 SFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRY 181 (414)
Q Consensus 102 s~v~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~g~Pv~lGEFG~~~~~~~~~~~~~ 181 (414)
. ..+ .+.-+-++.|-=+|..... ..+.-.+.+......+.+.|.||++=|+..+.... ..+..-
T Consensus 222 ~----g~~-~~~idgV~~Eslf~~~~~~----------~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~-~~n~~~ 285 (315)
T TIGR01370 222 H----GGL-AATVSGWAVEELFYYAANR----------PTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTKT-NENPAR 285 (315)
T ss_pred c----cch-hhhceEEEecceEEcCCCC----------CCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcccc-hhhHHH
Confidence 0 000 0111123333222332211 11111121222222334579999999998764321 123455
Q ss_pred HHHHHHHHHHCCCc
Q 015062 182 LNCFFGVAAELDWD 195 (414)
Q Consensus 182 ~~~~l~~l~e~~i~ 195 (414)
.+.+.+.++++|+.
T Consensus 286 ~~~~~~~~~~~Gf~ 299 (315)
T TIGR01370 286 MKDAAEKARAAGLI 299 (315)
T ss_pred HHHHHHHHHHcCCe
Confidence 68888888888863
No 48
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.68 E-value=35 Score=28.57 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC-CcEEEEcCccCCC
Q 015062 47 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANP-EVLVILSGLNFDK 99 (414)
Q Consensus 47 ~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP-~~LIiVeG~~~~~ 99 (414)
.+|.++++...++.+. ..+.+.++++|+..| +..|+++|.....
T Consensus 49 ~~pdvV~iS~~~~~~~---------~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 49 EDADAIGLSGLLTTHM---------TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred cCCCEEEEeccccccH---------HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 4777888887766643 556788889999999 8999999987554
No 49
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.17 E-value=17 Score=37.85 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=51.1
Q ss_pred CCCCceeeccCC--CCceeeccCCCCC---CccccCCceeeeeccceeEeeccCCcccEEeeecCCC--CCceEEEe
Q 015062 261 PATGLCVQRKSF--LDPLTLGPCTESE---AWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTDC--GSTWEIIS 330 (414)
Q Consensus 261 ~~tg~c~~~~~~--~~~l~~~~c~~~~---~W~~~~~~~l~~~~~~~cl~a~~~g~~~~~~~~c~~~--~~~W~~~s 330 (414)
...++|+.+.++ +.++.+-.|+.++ +|.-.+. .|.-.++.+||+..-.|.-......|.+. .|+|++..
T Consensus 480 ~~~elCL~v~~~~pg~~v~l~~C~~~e~~q~~v~~~~-~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 480 THRELCLAVGSNTPGSPVALVPCGNNETKQRWVELGG-HLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred HHHhhhheeecCCCCCeEEEEecCCCCCceEEEecCC-chhcccccceeccccCCCcceeecccccccccceeeeeh
Confidence 456889998663 3678899999884 5655553 44445789999998888876667889954 49999864
No 50
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=45.59 E-value=96 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCCCceEEE-ecCccEEeeecCCCceeEEEecCCCceeee
Q 015062 321 DCGSTWEII-SDSKMHLSSKADNGTTVCLDVDSSNTIVTN 359 (414)
Q Consensus 321 ~~~~~W~~~-s~s~~~~~~~~~~~~~lcld~~~~~~ivt~ 359 (414)
++.+.|+|. .+.+..++.+..+|.+|++|. +|.|+..
T Consensus 22 ~~~e~f~le~~~~~~~v~lrs~~GkYls~~~--~G~v~~~ 59 (111)
T PF06268_consen 22 SDWETFQLEFDDGSYKVALRSHNGKYLSVDS--DGSVVAD 59 (111)
T ss_dssp SCGGSEEEEEETTEEEEEEECTTSEEEEEET--TSEEEEE
T ss_pred cccEEEEEEEECCCCEEEEEcCCCCEEEEcC--CCeEEec
Confidence 556899998 555567777888899988865 6766653
No 51
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=41.06 E-value=46 Score=33.44 Aligned_cols=44 Identities=20% Similarity=0.040 Sum_probs=26.5
Q ss_pred CCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEE
Q 015062 46 NGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLV 90 (414)
Q Consensus 46 k~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LI 90 (414)
....++-.+=.-||.-..... ......|+-+-+++.+..=..-|
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~-~~lvpAm~ni~~aL~~~~L~~~I 124 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN-AYLVPAMQNIHNALTAAGLSDQI 124 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG-GGHHHHHHHHHHHHHHTT-TTTS
T ss_pred CcccceeeeecccccccCccc-eeeccHHHHHHHHHHhcCcCCcc
Confidence 334556666677887654221 25777888888888887766433
No 52
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=37.92 E-value=1e+02 Score=26.83 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCceEEEEeccCCCCCCC---CChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCC
Q 015062 38 LTKMATIFNGVRNVVGMSLRNELRGPK---QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK 99 (414)
Q Consensus 38 W~~iA~ryk~~pnViG~dL~NEP~~~~---~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~ 99 (414)
|..++++++..-.|+.+|+..--.... .....+...++.+.+.|++.+.+.+++| |-++|+
T Consensus 14 ~~~~~~~l~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lv-G~S~Gg 77 (228)
T PF12697_consen 14 WDPLAEALARGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILV-GHSMGG 77 (228)
T ss_dssp GHHHHHHHHTTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEE-EETHHH
T ss_pred HHHHHHHHhCCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccc-cccccc
Confidence 444555554566788999986322211 1234577778888888888888776666 555554
No 53
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=37.80 E-value=2.9e+02 Score=28.07 Aligned_cols=135 Identities=15% Similarity=0.025 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCccC-CCcchhhhcccccccCCCcEEEEEeecCCCCCCCccCCCCCcchhhHHHHHHHH
Q 015062 73 YMQLGAEAVHAANPEVLVILSGLNF-DKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRL 151 (414)
Q Consensus 73 ~~~~~~~aIr~~dP~~LIiVeG~~~-~~dLs~v~~~Pv~l~~~~klVYs~H~Y~p~~~~~W~~~~~~~~~~~~~~~~~~~ 151 (414)
++...+++||+++|+++|..-.... ..++...... ..- =|.+.+.|......... .....+.-..+
T Consensus 214 ~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a----~~~--D~~~~d~Y~~~~~~~~~-----~~~~~~a~~~d-- 280 (374)
T PF02449_consen 214 FFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWA----KYL--DVVSWDSYPDGSFDFYD-----DDPYSLAFNHD-- 280 (374)
T ss_dssp HHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHG----GGS--SSEEEEE-HHHHHTTTT-------TTHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCceEEeCccccccCcCCHHHHH----hhC--CcceeccccCcccCCCC-----CCHHHHHHHHH--
Confidence 4566789999999999998643332 2222222210 001 26778888651000000 00111111111
Q ss_pred HHHHHhcCCCEEEeccCcC--CCCC-C-ccchHHHHHHHHHHHHCCC-cEEEeccCccccccccccCCCc--eeecccCC
Q 015062 152 SGFLLEQGWPLFVSEFGAD--LRGN-N-VNDNRYLNCFFGVAAELDW-DWALWTLVGSYYLREGVIGLNE--YYGLFDWN 224 (414)
Q Consensus 152 ~gfl~~~g~Pv~lGEFG~~--~~~~-~-~~~~~~~~~~l~~l~e~~i-~Wa~Wa~~Gsyy~r~g~~~~~e--t~Gll~~d 224 (414)
....++.+.|.+|.|.-.. .-.. + ......++..+=..-.+|. +-.+|.+..+ ..+.| -+||+++|
T Consensus 281 l~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~wr~~-------~~g~E~~~~g~~~~d 353 (374)
T PF02449_consen 281 LMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQWRQS-------RFGAEQFHGGLVDHD 353 (374)
T ss_dssp HHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-SB---------SSSTTTTS--SB-TT
T ss_pred HHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeeccCC-------CCCchhhhcccCCcc
Confidence 1111247899999999332 1110 0 0011122222212223665 3568877532 22222 58999999
Q ss_pred CCC
Q 015062 225 WCD 227 (414)
Q Consensus 225 W~t 227 (414)
..+
T Consensus 354 g~~ 356 (374)
T PF02449_consen 354 GRE 356 (374)
T ss_dssp S--
T ss_pred CCC
Confidence 843
No 54
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.77 E-value=87 Score=33.35 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCC-----------C--C-h-------hhHHHHHHHHHHHHH
Q 015062 24 FGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-----------Q--N-V-------KDWYRYMQLGAEAVH 82 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~-----------~--n-~-------~dW~~~~~~~~~aIr 82 (414)
|-++.. .+.|.+.=+.++++|++... .=.+|||.... . . . ..-..+.-+|++++|
T Consensus 128 W~n~~~-v~~F~~YA~~~f~~fgdVk~---WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~ 203 (467)
T TIGR01233 128 FLNREN-IEHFIDYAAFCFEEFPEVNY---WTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYK 203 (467)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhCCCCE---EEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434 78999999999999986433 45799996420 0 0 0 112234467888999
Q ss_pred hcCCCcEE
Q 015062 83 AANPEVLV 90 (414)
Q Consensus 83 ~~dP~~LI 90 (414)
+.+|+..|
T Consensus 204 ~~~~~~~I 211 (467)
T TIGR01233 204 DKGYKGEI 211 (467)
T ss_pred HhCCCCeE
Confidence 98887543
No 55
>PRK10673 acyl-CoA esterase; Provisional
Probab=36.55 E-value=1.3e+02 Score=27.74 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCceEEEEeccCCCCCCCC--ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcch
Q 015062 37 GLTKMATIFNGVRNVVGMSLRNELRGPKQ--NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLS 102 (414)
Q Consensus 37 ~W~~iA~ryk~~pnViG~dL~NEP~~~~~--n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs 102 (414)
.|..++.++...-.|+.+|++. +|... ...++...++.+.+.|.+.+.+.+++| |-++|+.+.
T Consensus 31 ~~~~~~~~l~~~~~vi~~D~~G--~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lv-GhS~Gg~va 95 (255)
T PRK10673 31 NLGVLARDLVNDHDIIQVDMRN--HGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFI-GHSMGGKAV 95 (255)
T ss_pred HHHHHHHHHhhCCeEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE-EECHHHHHH
Confidence 4677777776667899999986 22111 112456667777777877777765555 777776443
No 56
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=36.38 E-value=1e+02 Score=32.86 Aligned_cols=61 Identities=8% Similarity=-0.035 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCC-----------C-C--h-------hhHHHHHHHHHHHHH
Q 015062 24 FGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-----------Q-N--V-------KDWYRYMQLGAEAVH 82 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~-----------~-n--~-------~dW~~~~~~~~~aIr 82 (414)
|-++.. .+.|.+.=+.+++||++... .=.+|||.... + . . ..-..+..+|++++|
T Consensus 129 W~n~~~-v~~F~~YA~~~~~~fgdVk~---W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~ 204 (469)
T PRK13511 129 WLNREN-IDHFVRYAEFCFEEFPEVKY---WTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFK 204 (469)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhCCCCE---EEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433 68899999999999999333 35799996321 0 1 1 112234467788899
Q ss_pred hcCCCc
Q 015062 83 AANPEV 88 (414)
Q Consensus 83 ~~dP~~ 88 (414)
+..|+.
T Consensus 205 ~~~~~g 210 (469)
T PRK13511 205 DKGYKG 210 (469)
T ss_pred HhCCCC
Confidence 987764
No 57
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=36.00 E-value=76 Score=26.97 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=38.8
Q ss_pred cceeEeeccCCcccEEeeecCCCCCceEEEecCccEEeee-cCCCceeEEEecCCCceeee
Q 015062 300 AYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVDSSNTIVTN 359 (414)
Q Consensus 300 ~~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~s~~~~~~~-~~~~~~lcld~~~~~~ivt~ 359 (414)
+++.|+...+|.-.-. .+-.++.+.|++.+.+.-.|..+ ...+.+||+|. .|.+.+.
T Consensus 9 ~~~~L~i~~~g~V~gt-~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~--~G~ly~~ 66 (122)
T PF00167_consen 9 TGYFLQINPNGTVDGT-GDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK--CGRLYGS 66 (122)
T ss_dssp TSEEEEEETTSBEEEE-SSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBT--TSBEEEE
T ss_pred CCeEEEECCCCeEeCC-CCcCcceeEEEEEeccceEEEEEEecceEEEEECC--CCeEccc
Confidence 3778888888753222 33357789999988776566666 45578999985 4666553
No 58
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=35.56 E-value=42 Score=35.39 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCC-----------CC--Ch-------hhHHHHHHHHHHHHHh
Q 015062 24 FGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP-----------KQ--NV-------KDWYRYMQLGAEAVHA 83 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~-----------~~--n~-------~dW~~~~~~~~~aIr~ 83 (414)
|-++.+ .+.|.+.=+.++++|++.-.. .=.+|||... .+ +. ..-..+.-++.+++|+
T Consensus 134 w~~~~~-~~~F~~Ya~~~~~~~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~ 210 (455)
T PF00232_consen 134 WLNRET-VDWFARYAEFVFERFGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKE 210 (455)
T ss_dssp GGSTHH-HHHHHHHHHHHHHHHTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHH-HHHHHHHHHHHHHHhCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhh
Confidence 555544 799999999999999996433 3478999542 00 11 2233456778999999
Q ss_pred cCCCcEEEE
Q 015062 84 ANPEVLVIL 92 (414)
Q Consensus 84 ~dP~~LIiV 92 (414)
..|+..|-+
T Consensus 211 ~~~~~~IGi 219 (455)
T PF00232_consen 211 KYPDGKIGI 219 (455)
T ss_dssp HTCTSEEEE
T ss_pred cccceEEec
Confidence 999877643
No 59
>PRK00865 glutamate racemase; Provisional
Probab=35.42 E-value=1.6e+02 Score=28.52 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 35 IKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 35 ~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
+..++.|.+++.+..-++..|..|=|+|.. ..++-..++.++++.+.+.+.+.+||..=.
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~k-s~~~i~~~~~~~~~~L~~~g~d~iVIaCNT 77 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGEK-SEEEIRERTLEIVEFLLEYGVKMLVIACNT 77 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCC-CHHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 456889999999998899999999999974 467788999999999999999987776543
No 60
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=33.90 E-value=99 Score=29.00 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCCCceEEEec-CccEEeeecCCCceeEEEecCCCceee
Q 015062 321 DCGSTWEIISD-SKMHLSSKADNGTTVCLDVDSSNTIVT 358 (414)
Q Consensus 321 ~~~~~W~~~s~-s~~~~~~~~~~~~~lcld~~~~~~ivt 358 (414)
++.|.|..+-- |.-+++++..+|.||+.|. +|.+++
T Consensus 25 ~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk--~G~v~a 61 (191)
T PF06229_consen 25 DPRQVWVATRVPGDEKIAFKSGHGKYLSCDK--DGIVSA 61 (191)
T ss_dssp -TTT-EEEEE--SSS-EEEEETTS-BEEE-S--SSBEEE
T ss_pred ChhHeEEEEEecCCCceEeeccCccEEEEcC--CCcEEE
Confidence 56789977433 4556899999999999885 455444
No 61
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=32.82 E-value=1.1e+02 Score=27.23 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=44.9
Q ss_pred CEEEecCCCCCCcccCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDL-WIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAE 79 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dgn~~w~d~~~~~d~-~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~ 79 (414)
|+|=|.|.... +.+.+-+. ++.+. ..+..+++.++++-.-=|+.=||+++.... ....|..++++..+
T Consensus 1 ~~isD~HL~~~--------~~~~~l~~-~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~--~~~~~~~~~~~~~~ 69 (156)
T cd08165 1 MFLADTHLLGS--------ILGHWLDK-LRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWS--TDEEWEDYVERFKK 69 (156)
T ss_pred CccccchhcCC--------cccHHHHH-HhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccC--CHHHHHHHHHHHHH
Confidence 78899997432 12222111 12222 222455666666544445666999986542 23456666555544
Q ss_pred HHHhcCCCcEEEEcCcc
Q 015062 80 AVHAANPEVLVILSGLN 96 (414)
Q Consensus 80 aIr~~dP~~LIiVeG~~ 96 (414)
..++...-.+++|.|+-
T Consensus 70 ~~~~~~~~~i~~v~GNH 86 (156)
T cd08165 70 MFGHPPDLPLHVVVGNH 86 (156)
T ss_pred HhccCCCCeEEEEcCCC
Confidence 33332234577888765
No 62
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=32.71 E-value=1.7e+02 Score=24.31 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCcccc--CCc-eeeee-ccceeEeeccCCcccEEeeecC-CCCCceEEEecCccEEeeecCCCceeEEEecCCCceee
Q 015062 285 EAWSYT--PHK-TISLK-GAYFCLQAKHVGKPAKLGIICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTIVT 358 (414)
Q Consensus 285 ~~W~~~--~~~-~l~~~-~~~~cl~a~~~g~~~~~~~~c~-~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~~~~ivt 358 (414)
+-|+.. ..+ .+.|+ ..+++|.+.++|. +.. ..-+ ++...|++.-.++. +..+..+|.+|+ ++.+|.+.+
T Consensus 25 e~f~le~~~~~~~v~lrs~~GkYls~~~~G~-v~~-~~~~~~~~~~F~i~~~~~~-~~~~~~nGkYl~--~~~~g~l~a 98 (111)
T PF06268_consen 25 ETFQLEFDDGSYKVALRSHNGKYLSVDSDGS-VVA-DSETPGPDEFFEIEWHGGK-VALRASNGKYLS--AGPNGQLKA 98 (111)
T ss_dssp GSEEEEEETTEEEEEEECTTSEEEEEETTSE-EEE-EESSSSGGGCBEEEEETTE-EEEECTTSCEEE--EETTTEEEE
T ss_pred EEEEEEEECCCCEEEEEcCCCCEEEEcCCCe-EEe-cCCCCCCCcEEEEEECCCE-EEEECCCCCEEe--eCCCCeEEE
Confidence 566665 222 32344 5789999999986 222 2223 56788888776553 445578899999 556777655
No 63
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=31.40 E-value=49 Score=24.04 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCc
Q 015062 73 YMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 73 ~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
.+.++.+.|+++||+..|.+.-+
T Consensus 28 e~~~l~~~I~~~Dp~AFi~v~~v 50 (55)
T PF10035_consen 28 ELPKLKKIIKEIDPKAFISVSDV 50 (55)
T ss_dssp HHHHHHHHHHCC-TT-EEEE---
T ss_pred HHHHHHHHHHHhCCCEEEEEEcc
Confidence 35667789999999999998643
No 64
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=29.70 E-value=64 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 68 KDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 68 ~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
......++++++.|++.+||.+|||+.-
T Consensus 69 ~~~~~a~~~~~~~i~~~~PDvlVIispD 96 (328)
T cd07366 69 ARCQAALDRLADFIRAARIDVAVIVGDD 96 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3567899999999999999999999874
No 65
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=29.17 E-value=63 Score=32.01 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 68 KDWYRYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 68 ~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
......++++.+.|++.+||.+|+++....
T Consensus 31 ~~v~~a~~~~~~~v~~~~PDvvVvis~dH~ 60 (278)
T PRK13364 31 KPFFDGFPPVREWLEKVKPDVAVVFYNDHG 60 (278)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCchH
Confidence 467789999999999999999999985543
No 66
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=28.89 E-value=3.8e+02 Score=23.05 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=35.2
Q ss_pred ceeEeeccCCcccEEeeecCCCCCceEEEecCccEEeee-cCCCceeEEEecCCCceee
Q 015062 301 YFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVDSSNTIVT 358 (414)
Q Consensus 301 ~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~s~~~~~~~-~~~~~~lcld~~~~~~ivt 358 (414)
+.-|+.-.+|+ |.-..+-+++.+.|++.|.+...|+.+ ...+.+||.|. .|.+-+
T Consensus 8 ~~~L~I~~dG~-V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~--~G~ly~ 63 (123)
T cd00058 8 GFHLQILPDGT-VDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNK--CGKLYG 63 (123)
T ss_pred CeEEEEcCCCc-EecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECC--CCCEEE
Confidence 34455555555 222233335789999999887777777 55678999985 444444
No 67
>PLN02814 beta-glucosidase
Probab=28.86 E-value=1.1e+02 Score=33.00 Aligned_cols=67 Identities=16% Similarity=0.484 Sum_probs=38.6
Q ss_pred cCC-CEEEeccCcCCCCC----CccchHHHHHHHHHHHH---CC---CcEEEeccCccccccccccCCCceeecccCCCC
Q 015062 158 QGW-PLFVSEFGADLRGN----NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 226 (414)
Q Consensus 158 ~g~-Pv~lGEFG~~~~~~----~~~~~~~~~~~l~~l~e---~~---i~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~~dW~ 226 (414)
++. |++|+|.|....+. +.....|++.-++.+.+ .| .|.++|++---|--. .+..--|||+--|..
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~---~Gy~~RfGLvyVD~~ 461 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELL---GGYTTSFGMYYVNFS 461 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEECCC
Confidence 444 89999999853321 22234566655544433 45 478999984211111 113445888877776
Q ss_pred C
Q 015062 227 D 227 (414)
Q Consensus 227 t 227 (414)
+
T Consensus 462 ~ 462 (504)
T PLN02814 462 D 462 (504)
T ss_pred C
Confidence 5
No 68
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=28.46 E-value=2.1e+02 Score=28.00 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCC-CceEEEEeccCCC--CCC--CCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcc
Q 015062 33 LWIKGLTKMATIFNG-VRNVVGMSLRNEL--RGP--KQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDL 101 (414)
Q Consensus 33 ~~~~~W~~iA~ryk~-~pnViG~dL~NEP--~~~--~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dL 101 (414)
.+.++|..+|+++.. .-+|+.+|++--= .+. .....+|...+..+++.+++.+.+. |++=|.+.|.-+
T Consensus 40 ~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~-v~LvG~SmGG~v 112 (266)
T TIGR03101 40 KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPP-VTLWGLRLGALL 112 (266)
T ss_pred chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCC-EEEEEECHHHHH
Confidence 456789999999964 4578889997521 111 1134566666667777777765444 555567776644
No 69
>TIGR03356 BGL beta-galactosidase.
Probab=28.34 E-value=1.8e+02 Score=30.57 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=40.0
Q ss_pred cCC-CEEEeccCcCCCCC-------CccchHHHHHHHHHHHH---CC---CcEEEeccCccccccccccCCCceeecccC
Q 015062 158 QGW-PLFVSEFGADLRGN-------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDW 223 (414)
Q Consensus 158 ~g~-Pv~lGEFG~~~~~~-------~~~~~~~~~~~l~~l~e---~~---i~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~~ 223 (414)
++. |++|+|.|....+. +.....|++..++.+.+ .| +|.++|++---|--.+ +..--|||+--
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~---gy~~rfGl~~V 411 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAE---GYSKRFGLVHV 411 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhc---ccccccceEEE
Confidence 565 89999999864221 22235576665555543 45 4789999854322111 23456888877
Q ss_pred CCCC
Q 015062 224 NWCD 227 (414)
Q Consensus 224 dW~t 227 (414)
|..+
T Consensus 412 D~~~ 415 (427)
T TIGR03356 412 DYET 415 (427)
T ss_pred CCCC
Confidence 7664
No 70
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=28.22 E-value=73 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 68 KDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 68 ~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
......++++++.|++.+||.+|||+.-.
T Consensus 71 ~~~~~a~~~~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 71 AACEAAIERMRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 46788999999999999999999997654
No 71
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=27.80 E-value=70 Score=31.59 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 68 KDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 68 ~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
......++++++.|++.+|+.+|+|+...
T Consensus 31 ~~~~~a~~~~~~~v~~~~PD~iVvis~dH 59 (276)
T cd07949 31 KPFFDGFPPVHDWLEKAKPDVAVVFYNDH 59 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCcH
Confidence 45678999999999999999999998644
No 72
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=45 Score=34.85 Aligned_cols=62 Identities=19% Similarity=0.430 Sum_probs=46.2
Q ss_pred ceeeccCCCCceeeccCCCCC---Ccccc-CCceeeeeccceeEeeccCCcccEEeeecC--CCCCceEEE
Q 015062 265 LCVQRKSFLDPLTLGPCTESE---AWSYT-PHKTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEII 329 (414)
Q Consensus 265 ~c~~~~~~~~~l~~~~c~~~~---~W~~~-~~~~l~~~~~~~cl~a~~~g~~~~~~~~c~--~~~~~W~~~ 329 (414)
+|+...+ ..+.+.-|+.++ .|+|. ..+.+.-.-.++||+.-..+..+.|++ |. +..|+|.+.
T Consensus 531 ~CltAdg--~~i~~~hC~lgtv~g~WqY~~~tk~~~H~~~~kC~~~se~~~qv~l~~-Cd~~~~~Qkw~~k 598 (603)
T KOG3737|consen 531 QCLTADG--SKIMITHCNLGTVKGEWQYFKNTKRFTHIPSGKCLDRSEVLHQVFLSN-CDSSKTTQKWEMK 598 (603)
T ss_pred eeeecCC--ceEEEEEeecccccCceehhhcchheeeccccccccccchhheeeecc-cCCCchhheeehh
Confidence 3777633 337889999996 89997 444666556889999999999999954 55 456999763
No 73
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.58 E-value=1.4e+02 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC--CcEEEEcCccCCCc
Q 015062 47 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANP--EVLVILSGLNFDKD 100 (414)
Q Consensus 47 ~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP--~~LIiVeG~~~~~d 100 (414)
.+|.+|+++..+.++- ..+.+.++++|+..| +..|+|+|.-...+
T Consensus 132 ~~~d~v~lS~~~~~~~---------~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~ 178 (201)
T cd02070 132 HKPDILGLSALMTTTM---------GGMKEVIEALKEAGLRDKVKVMVGGAPVNQE 178 (201)
T ss_pred cCCCEEEEeccccccH---------HHHHHHHHHHHHCCCCcCCeEEEECCcCCHH
Confidence 4677888887766653 457788899999988 89999999876543
No 74
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=27.40 E-value=1.3e+02 Score=33.16 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=51.1
Q ss_pred HHHHHHhCCCceEEEEeccCCCCCC-CC------------ChhhHHHHHHH-HHHHHHhcCCCcEEEEcCccCCCcc---
Q 015062 39 TKMATIFNGVRNVVGMSLRNELRGP-KQ------------NVKDWYRYMQL-GAEAVHAANPEVLVILSGLNFDKDL--- 101 (414)
Q Consensus 39 ~~iA~ryk~~pnViG~dL~NEP~~~-~~------------n~~dW~~~~~~-~~~aIr~~dP~~LIiVeG~~~~~dL--- 101 (414)
++=|.|.+.+|.|+.|.--||=..+ .+ ...|...+..+ +.+.....+|....|++...-|..-
T Consensus 424 ~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPsNG~ete~e 503 (867)
T KOG2230|consen 424 RYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPSNGKETEPE 503 (867)
T ss_pred HHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCCCCcccCcc
Confidence 4567899999999999999997553 11 12344444444 4555566677777888776644321
Q ss_pred hhhhcccccccCCCcEEEEEeecCCCC
Q 015062 102 SFVRNQAVNLTFTGKLVFEAHWYGFTD 128 (414)
Q Consensus 102 s~v~~~Pv~l~~~~klVYs~H~Y~p~~ 128 (414)
..+..+|-+ +--=.+|+|....
T Consensus 504 ~~VS~NP~d-----n~~GDVHfYdy~~ 525 (867)
T KOG2230|consen 504 NYVSSNPQD-----NQNGDVHFYDYTK 525 (867)
T ss_pred ccccCCCcc-----ccCCceEeeehhh
Confidence 233344432 2223579997543
No 75
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=27.29 E-value=1.2e+02 Score=31.66 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcC
Q 015062 38 LTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 94 (414)
Q Consensus 38 W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG 94 (414)
|+.|++..+.+.-++.+ =--++...-..-=..-++++++.||+++|+.+|||.-
T Consensus 144 ~~~i~~~~~~~tk~v~I---QRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDN 197 (403)
T PF06838_consen 144 WEAIKKALKPNTKMVLI---QRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDN 197 (403)
T ss_dssp HHHHHHHHHTTEEEEEE---E-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-
T ss_pred HHHHHHhhccCceEEEE---ecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 67788888876666632 2333431111112356788999999999999999964
No 76
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.61 E-value=1.2e+02 Score=32.38 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 72 RYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 72 ~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
..+.++++.||+.+|+..|+++|..-
T Consensus 77 ~~a~~~~~~~k~~~P~~~iV~GG~h~ 102 (497)
T TIGR02026 77 YIACETLKFARERLPNAIIVLGGIHP 102 (497)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCc
Confidence 45678889999999999999999864
No 77
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=26.51 E-value=2.1e+02 Score=30.58 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCC-----C--------C-Ch--------hhHHHHHHHHHHHH
Q 015062 24 FGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP-----K--------Q-NV--------KDWYRYMQLGAEAV 81 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~-----~--------~-n~--------~dW~~~~~~~~~aI 81 (414)
|-++.. .+.|.+.=+.+++||++.=.. .=.+|||... . + +. ..-..+.-+|++++
T Consensus 150 W~n~~~-v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~ 226 (478)
T PRK09593 150 WRNRKM-VGFYERLCRTLFTRYKGLVKY--WLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIA 226 (478)
T ss_pred CCChHH-HHHHHHHHHHHHHHhcCcCCE--EEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 444434 688999999999999985222 2367888521 0 0 10 11223446788899
Q ss_pred HhcCCCcE
Q 015062 82 HAANPEVL 89 (414)
Q Consensus 82 r~~dP~~L 89 (414)
|+..|+.-
T Consensus 227 ~~~~~~g~ 234 (478)
T PRK09593 227 HEVDPENK 234 (478)
T ss_pred HHhCCCCe
Confidence 99888743
No 78
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.28 E-value=2.9e+02 Score=26.72 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHH-hcCCCcEEEEcCcc
Q 015062 35 IKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVH-AANPEVLVILSGLN 96 (414)
Q Consensus 35 ~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr-~~dP~~LIiVeG~~ 96 (414)
+..++.|.+++.+..-|+-.|-.|=|+|.+ ..+.-..++.++++... +.+.+.+||..-+-
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~k-s~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA 72 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEK-SPEFILEYVLELLTFLKERHNIKLLVVACNTA 72 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 346788999998887788899999999985 45678889999999999 99999888876544
No 79
>PLN02998 beta-glucosidase
Probab=26.25 E-value=1.5e+02 Score=31.96 Aligned_cols=77 Identities=18% Similarity=0.369 Sum_probs=42.8
Q ss_pred HHHHHHHHHh-cCC-CEEEeccCcCCCC-C---CccchHHHHHHHHHHHH---CC---CcEEEeccCccccccccccCCC
Q 015062 148 VMRLSGFLLE-QGW-PLFVSEFGADLRG-N---NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLN 215 (414)
Q Consensus 148 ~~~~~gfl~~-~g~-Pv~lGEFG~~~~~-~---~~~~~~~~~~~l~~l~e---~~---i~Wa~Wa~~Gsyy~r~g~~~~~ 215 (414)
++....++.+ ++. |++|+|-|....+ . +..+..|++.-++.+.+ .| +|.++|++---|--. .+..
T Consensus 379 l~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~---~Gy~ 455 (497)
T PLN02998 379 LQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELF---GGYE 455 (497)
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---cccc
Confidence 3333334433 555 7999999986432 1 22234566555544443 44 478999984211111 1234
Q ss_pred ceeecccCCCCC
Q 015062 216 EYYGLFDWNWCD 227 (414)
Q Consensus 216 et~Gll~~dW~t 227 (414)
.-|||+--|..+
T Consensus 456 ~RfGLv~VD~~~ 467 (497)
T PLN02998 456 RSFGLLYVDFKD 467 (497)
T ss_pred CccceEEECCCC
Confidence 458998888765
No 80
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=26.01 E-value=1.6e+02 Score=31.41 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=43.4
Q ss_pred HHHHHHHHHh-cCCCEEEeccCcCCCCC--------CccchHHHHHHHHHHHH---CC---CcEEEeccCcccccccccc
Q 015062 148 VMRLSGFLLE-QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVI 212 (414)
Q Consensus 148 ~~~~~gfl~~-~g~Pv~lGEFG~~~~~~--------~~~~~~~~~~~l~~l~e---~~---i~Wa~Wa~~Gsyy~r~g~~ 212 (414)
++....++.+ ++.|++|+|-|....+. +.....|++.-+..+.+ .| .|.++|++---|--..|
T Consensus 353 l~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G-- 430 (474)
T PRK09852 353 LRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTG-- 430 (474)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCC--
Confidence 3333334433 77899999999864321 11234565555444433 45 47899998532211111
Q ss_pred CCCceeecccCCCCC
Q 015062 213 GLNEYYGLFDWNWCD 227 (414)
Q Consensus 213 ~~~et~Gll~~dW~t 227 (414)
....-|||+--|..+
T Consensus 431 ~y~~RfGLv~VD~~~ 445 (474)
T PRK09852 431 EMSKRYGFVYVDRDD 445 (474)
T ss_pred CccceeeeEEECCCC
Confidence 023468998888765
No 81
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=25.66 E-value=6.2e+02 Score=29.36 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=54.4
Q ss_pred EEecCCCCC-Ccc----cCCC---CCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCC---CChhhH
Q 015062 3 ILDNHISKP-GWC----CSNS---DGNGFFGD-QYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK---QNVKDW 70 (414)
Q Consensus 3 ILD~H~~~p-~wc----c~~~---dgn~~w~d-~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~---~n~~dW 70 (414)
||++|-..| |+| |... |+...++. -..-.++|++.=+..|+.|+.+--++ |.|.. .++..|
T Consensus 229 ~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~-------~MG~DFqY~~A~v~ 301 (996)
T KOG1959|consen 229 ALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMW-------PMGDDFQYENANVW 301 (996)
T ss_pred ccccCCCCCCCceeccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEE-------eccCCceehhhhHH
Confidence 577787665 777 3221 22212221 11124788888888899998764433 55542 367889
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEcCcc
Q 015062 71 YRYMQLGAEAVHAA---NPEVLVILSGLN 96 (414)
Q Consensus 71 ~~~~~~~~~aIr~~---dP~~LIiVeG~~ 96 (414)
++-|.++++-|.+- ..+.-|+.+.+.
T Consensus 302 fknmDkLI~yVN~~qa~gs~vnv~YSTps 330 (996)
T KOG1959|consen 302 FKNMDKLIKYVNERQADGSKVNVFYSTPS 330 (996)
T ss_pred HhhHHHHHHHhhhhhcCCceEEEEEcChH
Confidence 99999999998733 346677776654
No 82
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=25.20 E-value=1e+02 Score=29.93 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=42.0
Q ss_pred CEEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CceEEEEeccCCCCCCCCChhhHHHHHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNG---VRNVVGMSLRNELRGPKQNVKDWYRYMQLG 77 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dgn~~w~d~~~~~d~~~~~W~~iA~ryk~---~pnViG~dL~NEP~~~~~n~~dW~~~~~~~ 77 (414)
|++.|+.-+. ...|..||.|...|. +|++-+.+|..||-. -|+- .--|+|.--++..-.=|.-.+++
T Consensus 145 YmLYdlvPS~------eiTGGpWFtD~elDv-Efi~~ll~ii~rf~~~n~fp~k---n~~~gpnv~~~P~y~~ypT~~~I 214 (301)
T COG5111 145 YMLYDLVPSE------EITGGPWFTDNELDV-EFIARLLEIIERFLEKNLFPRK---NFEEGPNVFYAPKYEDYPTLEDI 214 (301)
T ss_pred EEEecccccc------cccCCCccccCcccH-HHHHHHHHHHHHHHHhccCCcc---chhcCCccccCCccCCCccHHHH
Confidence 5666766443 346889999999986 566767788888832 3331 11244422111000112345566
Q ss_pred HHHHHhcC
Q 015062 78 AEAVHAAN 85 (414)
Q Consensus 78 ~~aIr~~d 85 (414)
.+-||+++
T Consensus 215 ~n~vr~~n 222 (301)
T COG5111 215 MNYVRNVN 222 (301)
T ss_pred HHHHHhce
Confidence 67777765
No 83
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.03 E-value=67 Score=29.43 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHHHHHHhCCC-ceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcchhhhc
Q 015062 38 LTKMATIFNGV-RNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRN 106 (414)
Q Consensus 38 W~~iA~ryk~~-pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dLs~v~~ 106 (414)
...+|+..++. -.|+|++.-...... ....++...+.+.+++|++..|+.-+++-|-++|+-|..-..
T Consensus 16 y~~la~~l~~~~~~v~~i~~~~~~~~~-~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A 84 (229)
T PF00975_consen 16 YRPLARALPDDVIGVYGIEYPGRGDDE-PPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMA 84 (229)
T ss_dssp GHHHHHHHTTTEEEEEEECSTTSCTTS-HEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEEEecCCCCCCC-CCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHH
Confidence 47889999997 889999876664111 112468889999999999999998888889998886655433
No 84
>PLN02899 alpha-galactosidase
Probab=24.69 E-value=53 Score=36.21 Aligned_cols=63 Identities=22% Similarity=0.433 Sum_probs=41.6
Q ss_pred cceeEeeccCCcc----cEEe--eecC-CCCCceEEEecCccEEeeecCCCceeEEEecC-CCceee---eeeeEeCCC
Q 015062 300 AYFCLQAKHVGKP----AKLG--IICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDS-SNTIVT---NTCKCLSRD 367 (414)
Q Consensus 300 ~~~cl~a~~~g~~----~~~~--~~c~-~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~-~~~ivt---~~c~c~~~~ 367 (414)
..+||+|-...+. .+.+ -.|. .++|-||+..+++|+ +.-++||.-|.. ...+++ +..+-...+
T Consensus 486 ~~~c~~~~~~~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~-----~~~sglca~v~~~~~~~~~~~~r~w~a~g~~ 559 (633)
T PLN02899 486 GELCLDASPKQKRTSKDFRSGSFSPCRWDANQMWELNNNGTLI-----SSYSGLCATVNSVVAEVATGGVRSWIATGRK 559 (633)
T ss_pred cChhhccCCCCCcCHhHhhccccCCCCCChhhceeeCCCCCEe-----cCccccceEeeccccccccCceeEEEEcCCC
Confidence 4467777765332 2222 3588 889999999999975 235899999984 334433 666655443
No 85
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=24.49 E-value=2.4e+02 Score=25.40 Aligned_cols=90 Identities=8% Similarity=0.061 Sum_probs=52.7
Q ss_pred CEEEecCCCCCCcccCCCCCCCC-C--CCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHH
Q 015062 1 MVILDNHISKPGWCCSNSDGNGF-F--GDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLG 77 (414)
Q Consensus 1 ~VILD~H~~~p~wcc~~~dgn~~-w--~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~ 77 (414)
++|-|.|.-++. .....++ + -.+.++.....+.|..+.++++=.--|+.=||+.+.... ....|..+.++.
T Consensus 1 llvaDpql~~~~----~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~--~~~~~~~~~~~~ 74 (171)
T cd07384 1 LLVADPQILDET----SYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIA--DSEEWEEYVKRF 74 (171)
T ss_pred CcccCccccCCC----CCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeC--CHHHHHHHHHHH
Confidence 357788887752 1122232 1 123444455666777777777655556666999886653 234576666655
Q ss_pred HHHHHhcC----CCcEEEEcCcc
Q 015062 78 AEAVHAAN----PEVLVILSGLN 96 (414)
Q Consensus 78 ~~aIr~~d----P~~LIiVeG~~ 96 (414)
.+..+... .--+++|.|+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~GNH 97 (171)
T cd07384 75 KKIFFLPSNGLEDIPVYYVPGNH 97 (171)
T ss_pred HHHhcccccccCCceEEEECCcc
Confidence 55444333 34578888876
No 86
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=24.48 E-value=2.6e+02 Score=27.15 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC-CcEEEEcCc
Q 015062 33 LWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANP-EVLVILSGL 95 (414)
Q Consensus 33 ~~~~~W~~iA~ryk~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP-~~LIiVeG~ 95 (414)
...+.|+.+.++.+=.--|+.=||+++-+. .+...|...+++..+..++... .-++.|-|+
T Consensus 32 ylr~~~~~~~~~l~PD~vv~lGDL~d~G~~--~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGN 93 (257)
T cd08163 32 YLRRNWRYMQKQLKPDSTIFLGDLFDGGRD--WADEYWKKEYNRFMRIFDPSPGRKMVESLPGN 93 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCee--CcHHHHHHHHHHHHHHhcCCCccceEEEeCCC
Confidence 345678888877764444555699998432 2446788777776666554321 234455554
No 87
>PLN02748 tRNA dimethylallyltransferase
Probab=24.44 E-value=1.6e+02 Score=31.46 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 66 NVKDWYRYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 66 n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
+..+|...+.++++.|++-+ ...|+|+|+++
T Consensus 92 sv~~F~~~A~~~I~~I~~rg-k~PIlVGGTgl 122 (468)
T PLN02748 92 TAKDFRDHAVPLIEEILSRN-GLPVIVGGTNY 122 (468)
T ss_pred cHHHHHHHHHHHHHHHHhcC-CCeEEEcChHH
Confidence 56899999999999998876 68999999985
No 88
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.28 E-value=3.9e+02 Score=23.12 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCCceEEEEec-cCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 46 NGVRNVVGMSL-RNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 46 k~~pnViG~dL-~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
...|.++.+.+ .|..... .+...+.+.++++++++|+.+|+..|++-++
T Consensus 46 ~~~pd~vvl~~G~ND~~~~-~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQG-TSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred ccCCCEEEEEeeccCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 44566444433 5665432 2457788888888888888887777777543
No 89
>PLN02849 beta-glucosidase
Probab=24.05 E-value=2.4e+02 Score=30.45 Aligned_cols=67 Identities=22% Similarity=0.561 Sum_probs=39.5
Q ss_pred cCC-CEEEeccCcCCCCC------CccchHHHHHHHHHHHH---CC---CcEEEeccCccccccccccCCCceeecccCC
Q 015062 158 QGW-PLFVSEFGADLRGN------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWN 224 (414)
Q Consensus 158 ~g~-Pv~lGEFG~~~~~~------~~~~~~~~~~~l~~l~e---~~---i~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~~d 224 (414)
++. ||+|+|-|....+. +.....|++.-+..+.+ .| .|.++|++---|--.+ +..--|||+--|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~---Gy~~RfGLi~VD 459 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLK---GYEFSFGLYSVN 459 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhc---cccCccceEEEC
Confidence 555 79999999864321 12234566555554443 45 4789999843221111 234568998887
Q ss_pred CCC
Q 015062 225 WCD 227 (414)
Q Consensus 225 W~t 227 (414)
..+
T Consensus 460 ~~~ 462 (503)
T PLN02849 460 FSD 462 (503)
T ss_pred CCC
Confidence 765
No 90
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.94 E-value=3.6e+02 Score=23.00 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCceEEEEe-ccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCc
Q 015062 22 GFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMS-LRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 95 (414)
Q Consensus 22 ~~w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~d-L~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~ 95 (414)
++-|.. ...+.+.+...... ..|.++.+- =.|+.... .....+...+++.++.||+..|+..|++-+.
T Consensus 19 g~~G~~---~~~~~~~~~~~~~~--~~pd~vvi~~G~ND~~~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 19 GHSGYL---IDQIAAAAADWVLA--AKPDVVLLHLGTNDLVLN-RDPDTAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCcc---HHHHHHHhhhcccc--CCCCEEEEeccCcccccC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 444433 44555555433332 356644443 35665432 2457888999999999999999988887543
No 91
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=23.88 E-value=2.6e+02 Score=22.79 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=39.8
Q ss_pred ccEEeeecCCCCCceEEEecCccEEeeecCCCceeEEEecCCCceeeeeeeEeCCCCCC
Q 015062 312 PAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTIVTNTCKCLSRDKTC 370 (414)
Q Consensus 312 ~~~~~~~c~~~~~~W~~~s~s~~~~~~~~~~~~~lcld~~~~~~ivt~~c~c~~~~~~c 370 (414)
|+.+....-..-.+..-.||++.|+-+.+ ++.|-|.-+-+..+-..-|+|+.-|..+
T Consensus 4 ~vv~~e~~i~~~GrF~AysDgrVr~~F~D--rt~L~l~~~~~~~~~~~~c~l~~pDG~~ 60 (85)
T PF15016_consen 4 PVVLEESSIPGVGRFTAYSDGRVRVHFDD--RTILTLIWNFSSREELGWCKLTFPDGQQ 60 (85)
T ss_pred ceeEEEEecCCceEEEEEcCCeEEEEEcC--CCEEEEEeCCCCcccCCEEEEEccCCCE
Confidence 34443333344577888999999988875 6777777765666656789998777655
No 92
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=23.76 E-value=1.4e+02 Score=25.80 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=38.2
Q ss_pred eeEeeccCCcccEEeeecCCCCCceEEEecCccEEeee-cCCCceeEEEecC---CCceeeeeeeEe
Q 015062 302 FCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVDS---SNTIVTNTCKCL 364 (414)
Q Consensus 302 ~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~s~~~~~~~-~~~~~~lcld~~~---~~~ivt~~c~c~ 364 (414)
.-|+.-.+|.. .-..+-+++.+.|++.|.+...|..+ ...+.+||+|... .....+..|...
T Consensus 13 ~~L~I~~~G~V-~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s~~~~~dC~F~ 78 (126)
T smart00442 13 QHLQILPDGTV-DGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGSKNFTEDCVFR 78 (126)
T ss_pred eEEEEcCCceE-ecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEcccCCCCcEEE
Confidence 44666656542 22233346789999999876666666 5667899998863 123344556654
No 93
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=23.67 E-value=92 Score=30.75 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 68 KDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 68 ~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
......++++++.|++.+||.+|+++...
T Consensus 31 ~~~~~a~~~~~~~i~~~~PD~iVvi~~dH 59 (277)
T cd07950 31 APIFDGYEPVKQWLAEQKPDVLFMVYNDH 59 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 46778999999999999999999998543
No 94
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=23.59 E-value=97 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 67 VKDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 67 ~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
+......++++++.|++..|+.+|+++.-.
T Consensus 32 ~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw 61 (294)
T cd07372 32 WEQLRWAYERARESIEALKPDVLLVHSPHW 61 (294)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 345678999999999999999999998764
No 95
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=22.27 E-value=1.1e+02 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEcCcc
Q 015062 67 VKDWYRYMQLGAEAVHAANPEVLVILSGLN 96 (414)
Q Consensus 67 ~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~ 96 (414)
.....+.++++++.|++..|+.+|+++.-.
T Consensus 26 ~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h 55 (271)
T cd07359 26 RAAVFAAFARIRDRLEAARPDVVVVVGNDH 55 (271)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 355678899999999999999999998844
No 96
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=21.69 E-value=96 Score=31.28 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC
Q 015062 58 NELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 98 (414)
Q Consensus 58 NEP~~~~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~ 98 (414)
+||... .+......++++++.|++.+|+.+||++.....
T Consensus 17 ~~~~~~--~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~ 55 (313)
T PRK13370 17 VDPAQE--VLAEVNAVIAAAREFVAAFDPELVVLFAPDHYN 55 (313)
T ss_pred CCCChH--HHHHHHHHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 666543 245677889999999999999999999775443
No 97
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.22 E-value=2.3e+02 Score=28.42 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=25.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 66 NVKDWYRYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 66 n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
+..+|.+.+.++++.|++-+ +..|+|+|+++
T Consensus 73 sv~~f~~~a~~~i~~i~~~g-k~PilvGGTgl 103 (300)
T PRK14729 73 NLGIFYKEALKIIKELRQQK-KIPIFVGGSAF 103 (300)
T ss_pred eHHHHHHHHHHHHHHHHHCC-CCEEEEeCchH
Confidence 56789999998888888775 56899999874
No 98
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=21.14 E-value=2.2e+02 Score=23.38 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=28.9
Q ss_pred CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC-CcEEEEcCccCC
Q 015062 47 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANP-EVLVILSGLNFD 98 (414)
Q Consensus 47 ~~pnViG~dL~NEP~~~~~n~~dW~~~~~~~~~aIr~~dP-~~LIiVeG~~~~ 98 (414)
..|.++++..+...+. ..-+.+..+++..| +..|+++|....
T Consensus 49 ~~pdiV~iS~~~~~~~----------~~~~~~~~~~~~~p~~~~ivvGG~~~t 91 (125)
T cd02065 49 EDADVVGLSALSTTHM----------EAMKLVIEALKELGIDIPVVVGGAHPT 91 (125)
T ss_pred cCCCEEEEecchHhHH----------HHHHHHHHHHHhcCCCCeEEEeCCcCC
Confidence 6788999988775542 22233445666667 999999997654
No 99
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=21.14 E-value=3.5e+02 Score=23.82 Aligned_cols=64 Identities=9% Similarity=-0.063 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCceEEEEeccCCCCCC-CCChhhHHHHHHHHHHHHHhcCCCcEEEEcCccCCCcc
Q 015062 37 GLTKMATIFNGVRNVVGMSLRNELRGP-KQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDL 101 (414)
Q Consensus 37 ~W~~iA~ryk~~pnViG~dL~NEP~~~-~~n~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~~dL 101 (414)
.|..+++.++..-+|+.+|+..-=... .....++...++.+.+.|.+.+.+.++++ |.++|+-+
T Consensus 28 ~~~~~~~~l~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~~~~~v~li-G~S~Gg~~ 92 (251)
T TIGR02427 28 MWDPVLPALTPDFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHLGIERAVFC-GLSLGGLI 92 (251)
T ss_pred hHHHHHHHhhcccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceEEE-EeCchHHH
Confidence 467777777777789999996421100 00112455555666666777777665544 77777643
No 100
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.80 E-value=1.1e+02 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEcCccC
Q 015062 67 VKDWYRYMQLGAEAVHAANPEVLVILSGLNF 97 (414)
Q Consensus 67 ~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~ 97 (414)
+......++++++.|++.+||.+|++.....
T Consensus 30 ~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~ 60 (279)
T PRK13365 30 WKPLFDGYEPVAAWLAEQKADVLVFFYNDHC 60 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcCchH
Confidence 3567789999999999999999999966543
No 101
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.39 E-value=1.1e+02 Score=30.06 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEcCccCC
Q 015062 67 VKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 98 (414)
Q Consensus 67 ~~dW~~~~~~~~~aIr~~dP~~LIiVeG~~~~ 98 (414)
.......++++.+.|++.+||.+|+++...+-
T Consensus 28 ~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~ 59 (277)
T cd07368 28 REICWHAYAICAERLAALQVTSVVVIGDDHYT 59 (277)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchHh
Confidence 34566899999999999999999999865543
No 102
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=20.17 E-value=1.7e+02 Score=31.16 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=39.3
Q ss_pred cCCCEEEeccCcCCCCC--------CccchHHHHHHHHHHH----HCC---CcEEEeccCccccccccccCCCceeeccc
Q 015062 158 QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAA----ELD---WDWALWTLVGSYYLREGVIGLNEYYGLFD 222 (414)
Q Consensus 158 ~g~Pv~lGEFG~~~~~~--------~~~~~~~~~~~l~~l~----e~~---i~Wa~Wa~~Gsyy~r~g~~~~~et~Gll~ 222 (414)
++.|++|+|-|....+. +.....|++.-+..+. +.| .|.++|++---|--.+| ....-|||+-
T Consensus 366 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G--~y~~RfGlv~ 443 (476)
T PRK09589 366 YQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTG--EMKKRYGFIY 443 (476)
T ss_pred cCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCC--ccccceeeEE
Confidence 67899999999864221 1123445554444333 445 47899998432211111 0235689988
Q ss_pred CCCCCC
Q 015062 223 WNWCDI 228 (414)
Q Consensus 223 ~dW~t~ 228 (414)
-|..+.
T Consensus 444 VD~~~~ 449 (476)
T PRK09589 444 VDKDNE 449 (476)
T ss_pred EcCCCC
Confidence 887653
No 103
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=20.16 E-value=2.3e+02 Score=30.25 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeccCCCC
Q 015062 24 FGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 61 (414)
Q Consensus 24 w~d~~~~~d~~~~~W~~iA~ryk~~pnViG~dL~NEP~ 61 (414)
|-++.+ .+.|.+..+.+++||++.-.. .=.+|||.
T Consensus 146 W~n~~~-~~~F~~Ya~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 146 WTNRKV-VDFFVRFAEVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred CCChHH-HHHHHHHHHHHHHHhcCcCCE--EEEecCcc
Confidence 555544 799999999999999996332 23789985
Done!