Query 015063
Match_columns 414
No_of_seqs 178 out of 931
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.1 0.0053 1.8E-07 46.6 11.0 39 315-353 46-86 (95)
2 2lkz_A RNA-binding protein 5; 97.1 0.0012 4.3E-08 50.7 6.9 35 196-233 7-41 (95)
3 4fxv_A ELAV-like protein 1; RN 97.0 0.0029 1E-07 48.9 8.6 77 197-349 18-96 (99)
4 3s8s_A Histone-lysine N-methyl 97.0 0.0032 1.1E-07 49.7 8.6 79 196-350 4-84 (110)
5 3p5t_L Cleavage and polyadenyl 97.0 0.0021 7.3E-08 48.6 7.2 37 316-352 45-83 (90)
6 1fxl_A Paraneoplastic encephal 96.9 0.0029 9.9E-08 53.1 8.4 38 197-239 1-38 (167)
7 2dgv_A HnRNP M, heterogeneous 96.9 0.006 2.1E-07 46.0 9.3 35 316-350 48-84 (92)
8 2jrs_A RNA-binding protein 39; 96.9 0.008 2.7E-07 47.1 10.2 84 195-354 23-108 (108)
9 4f25_A Polyadenylate-binding p 96.9 0.0047 1.6E-07 49.0 8.8 35 198-237 5-39 (115)
10 2lxi_A RNA-binding protein 10; 96.8 0.0022 7.4E-08 48.8 6.3 35 315-349 43-80 (91)
11 2cq3_A RNA-binding protein 9; 96.8 0.015 5.2E-07 44.8 11.1 36 195-235 12-47 (103)
12 1x5s_A Cold-inducible RNA-bind 96.8 0.01 3.6E-07 45.7 9.9 35 315-349 53-89 (102)
13 3mdf_A Peptidyl-prolyl CIS-tra 96.7 0.008 2.7E-07 44.5 8.7 35 196-235 5-39 (85)
14 1whw_A Hypothetical protein ri 96.7 0.012 4.2E-07 45.0 9.7 38 315-352 49-88 (99)
15 2cpd_A Apobec-1 stimulating pr 96.7 0.013 4.3E-07 45.0 9.8 34 195-231 12-45 (99)
16 4a8x_A RNA-binding protein wit 96.7 0.007 2.4E-07 45.1 8.0 35 316-350 47-83 (88)
17 2dgs_A DAZ-associated protein 96.7 0.019 6.4E-07 43.9 10.7 36 195-235 7-42 (99)
18 3bs9_A Nucleolysin TIA-1 isofo 96.7 0.0079 2.7E-07 44.8 8.3 37 196-237 4-40 (87)
19 2cqi_A Nucleolysin TIAR; RNA r 96.7 0.014 4.8E-07 45.0 9.9 35 316-350 55-91 (103)
20 2dgp_A Bruno-like 4, RNA bindi 96.7 0.019 6.5E-07 44.5 10.8 36 315-350 54-94 (106)
21 2x1f_A MRNA 3'-END-processing 96.6 0.011 3.7E-07 45.1 9.0 36 315-350 43-80 (96)
22 2d9p_A Polyadenylate-binding p 96.6 0.013 4.4E-07 45.2 9.5 35 316-350 55-91 (103)
23 1x5u_A Splicing factor 3B subu 96.6 0.018 6E-07 44.6 10.2 36 315-350 56-93 (105)
24 2cph_A RNA binding motif prote 96.6 0.017 5.9E-07 44.8 10.1 37 315-351 57-96 (107)
25 3nmr_A Cugbp ELAV-like family 96.5 0.012 4.2E-07 49.6 9.6 37 197-238 2-38 (175)
26 3md1_A Nuclear and cytoplasmic 96.5 0.017 5.8E-07 42.5 9.1 34 316-349 43-78 (83)
27 2fy1_A RNA-binding motif prote 96.5 0.018 6.2E-07 45.7 9.8 34 316-349 48-83 (116)
28 2dnh_A Bruno-like 5, RNA bindi 96.5 0.021 7.3E-07 44.1 10.0 35 316-350 56-95 (105)
29 1p27_B RNA-binding protein 8A; 96.5 0.023 7.8E-07 44.0 10.1 38 195-237 20-57 (106)
30 1x5t_A Splicing factor 3B subu 96.5 0.012 4.2E-07 44.7 8.3 35 315-349 47-83 (96)
31 2cpz_A CUG triplet repeat RNA- 96.5 0.015 5.1E-07 45.9 9.1 37 196-237 23-59 (115)
32 2e5h_A Zinc finger CCHC-type a 96.5 0.012 4.2E-07 44.5 8.2 36 195-235 13-48 (94)
33 2a3j_A U1 small nuclear ribonu 96.4 0.02 6.9E-07 46.4 9.9 43 316-358 72-116 (127)
34 2do4_A Squamous cell carcinoma 96.4 0.015 5.2E-07 44.5 8.8 35 316-350 58-94 (100)
35 1wi8_A EIF-4B, eukaryotic tran 96.4 0.023 7.8E-07 43.9 9.6 35 195-235 12-46 (104)
36 2dnm_A SRP46 splicing factor; 96.4 0.02 6.8E-07 44.1 9.2 35 315-349 54-90 (103)
37 1b7f_A Protein (SXL-lethal pro 96.4 0.02 6.9E-07 48.0 10.0 58 316-373 45-110 (168)
38 2dgo_A Cytotoxic granule-assoc 96.4 0.028 9.4E-07 44.3 10.2 38 195-237 12-49 (115)
39 2cpf_A RNA binding motif prote 96.4 0.015 5.1E-07 44.4 8.2 36 197-237 4-39 (98)
40 3lqv_A PRE-mRNA branch site pr 96.4 0.02 6.8E-07 45.1 9.2 35 316-350 47-83 (115)
41 2cqc_A Arginine/serine-rich sp 96.4 0.015 5E-07 44.0 8.1 38 195-237 12-49 (95)
42 2err_A Ataxin-2-binding protei 96.3 0.013 4.6E-07 45.9 8.0 34 316-349 69-104 (109)
43 2div_A TRNA selenocysteine ass 96.3 0.03 1E-06 42.7 9.7 38 195-237 6-44 (99)
44 2cq0_A Eukaryotic translation 96.3 0.02 6.7E-07 44.2 8.7 38 195-237 12-49 (103)
45 1oo0_B CG8781-PA, drosophila Y 96.3 0.027 9.2E-07 44.0 9.5 36 195-235 23-58 (110)
46 3md3_A Nuclear and cytoplasmic 96.3 0.0099 3.4E-07 49.7 7.4 36 199-239 1-36 (166)
47 1x4a_A Splicing factor, argini 96.2 0.031 1.1E-06 43.6 9.6 34 316-349 61-96 (109)
48 3ex7_B RNA-binding protein 8A; 96.2 0.031 1.1E-06 44.8 9.9 35 315-349 63-99 (126)
49 2dng_A Eukaryotic translation 96.2 0.029 9.8E-07 43.3 9.3 37 195-237 12-48 (103)
50 2cqd_A RNA-binding region cont 96.2 0.024 8.2E-07 44.8 9.0 36 195-235 14-49 (116)
51 1h2v_Z 20 kDa nuclear CAP bind 96.2 0.021 7.2E-07 47.8 9.1 79 196-350 37-117 (156)
52 1x4h_A RNA-binding protein 28; 96.2 0.033 1.1E-06 43.4 9.6 35 196-235 13-47 (111)
53 1p1t_A Cleavage stimulation fa 96.2 0.017 6E-07 44.5 7.8 36 316-351 50-87 (104)
54 2dhg_A TRNA selenocysteine ass 96.2 0.031 1.1E-06 43.1 9.3 37 196-237 7-44 (104)
55 2la6_A RNA-binding protein FUS 96.2 0.035 1.2E-06 42.4 9.4 35 315-349 62-98 (99)
56 3ulh_A THO complex subunit 4; 96.2 0.028 9.6E-07 43.6 9.0 37 195-236 26-62 (107)
57 2cpj_A Non-POU domain-containi 96.2 0.035 1.2E-06 42.4 9.4 35 317-351 52-88 (99)
58 2cqb_A Peptidyl-prolyl CIS-tra 96.1 0.017 5.8E-07 44.4 7.5 35 315-349 53-89 (102)
59 2cqg_A TDP-43, TAR DNA-binding 96.1 0.027 9.4E-07 43.3 8.7 37 196-237 13-49 (103)
60 2dnq_A RNA-binding protein 4B; 96.1 0.056 1.9E-06 40.4 10.1 33 317-349 43-77 (90)
61 2cqp_A RNA-binding protein 12; 96.1 0.014 4.8E-07 44.5 6.8 38 316-353 57-96 (98)
62 1x4c_A Splicing factor, argini 96.1 0.024 8.2E-07 44.2 8.3 28 196-226 13-40 (108)
63 3r27_A HnRNP L, heterogeneous 96.1 0.036 1.2E-06 42.9 9.0 35 194-233 17-51 (100)
64 1uaw_A Mouse-musashi-1; RNP-ty 96.1 0.024 8.3E-07 40.9 7.8 35 315-349 41-76 (77)
65 2dgx_A KIAA0430 protein; RRM d 96.1 0.039 1.3E-06 41.9 9.3 33 317-349 53-87 (96)
66 2kt5_A RNA and export factor-b 96.1 0.032 1.1E-06 44.6 9.1 35 316-350 76-112 (124)
67 2cpi_A CCR4-NOT transcription 96.0 0.021 7.3E-07 44.8 7.8 35 315-349 62-98 (111)
68 2khc_A Testis-specific RNP-typ 96.0 0.024 8.2E-07 44.9 8.1 35 196-235 38-72 (118)
69 2dnp_A RNA-binding protein 14; 96.0 0.041 1.4E-06 41.2 9.0 32 318-349 45-78 (90)
70 3ns6_A Eukaryotic translation 96.0 0.014 4.9E-07 44.9 6.5 34 316-349 54-90 (100)
71 1x4g_A Nucleolysin TIAR; struc 96.0 0.039 1.3E-06 43.0 9.1 34 317-350 62-97 (109)
72 2dgt_A RNA-binding protein 30; 96.0 0.052 1.8E-06 40.8 9.5 29 195-226 7-35 (92)
73 2kxn_B Transformer-2 protein h 96.0 0.045 1.5E-06 44.3 9.6 34 316-349 88-123 (129)
74 1x4e_A RNA binding motif, sing 96.0 0.034 1.2E-06 41.1 8.2 34 197-235 4-37 (85)
75 2dgu_A Heterogeneous nuclear r 96.0 0.043 1.5E-06 42.2 9.1 34 317-350 46-81 (103)
76 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.9 0.031 1E-06 45.6 8.6 35 196-235 61-95 (140)
77 1wex_A Hypothetical protein (r 95.9 0.069 2.4E-06 41.5 10.1 34 195-233 12-45 (104)
78 1whx_A Hypothetical protein ri 95.9 0.026 8.9E-07 44.4 7.7 34 317-350 47-82 (111)
79 2ad9_A Polypyrimidine tract-bi 95.9 0.029 1E-06 44.8 7.9 33 196-233 29-61 (119)
80 1x4f_A Matrin 3; structural ge 95.9 0.049 1.7E-06 43.0 9.1 40 317-356 63-106 (112)
81 3n9u_C Cleavage and polyadenyl 95.8 0.036 1.2E-06 46.6 8.7 38 197-237 54-91 (156)
82 1nu4_A U1A RNA binding domain; 95.8 0.03 1E-06 42.5 7.6 40 316-355 51-92 (97)
83 1why_A Hypothetical protein ri 95.8 0.071 2.4E-06 40.4 9.7 33 317-349 54-90 (97)
84 4f02_A Polyadenylate-binding p 95.8 0.055 1.9E-06 47.7 10.3 102 197-374 14-125 (213)
85 2e44_A Insulin-like growth fac 95.8 0.07 2.4E-06 40.3 9.6 36 317-352 55-92 (96)
86 1x5o_A RNA binding motif, sing 95.8 0.07 2.4E-06 41.8 9.8 36 196-236 23-58 (114)
87 2i2y_A Fusion protein consists 95.8 0.09 3.1E-06 43.5 10.9 35 317-351 111-147 (150)
88 2ki2_A SS-DNA binding protein 95.8 0.019 6.4E-07 43.0 6.1 34 316-350 43-78 (90)
89 3beg_B Splicing factor, argini 95.7 0.05 1.7E-06 43.0 8.8 23 317-339 52-74 (115)
90 2nlw_A Eukaryotic translation 95.7 0.049 1.7E-06 42.2 8.6 36 316-351 61-99 (105)
91 2do0_A HnRNP M, heterogeneous 95.7 0.042 1.4E-06 43.1 8.3 36 196-236 13-48 (114)
92 1wf1_A RNA-binding protein RAL 95.7 0.044 1.5E-06 42.8 8.2 34 317-350 63-98 (110)
93 2cpe_A RNA-binding protein EWS 95.7 0.06 2E-06 42.1 9.0 35 315-349 64-100 (113)
94 2f3j_A RNA and export factor b 95.7 0.042 1.4E-06 47.2 8.7 41 315-355 128-170 (177)
95 2hvz_A Splicing factor, argini 95.7 0.065 2.2E-06 40.9 9.1 33 317-349 38-72 (101)
96 1wg5_A Heterogeneous nuclear r 95.7 0.053 1.8E-06 41.9 8.5 42 315-358 56-99 (104)
97 2kvi_A Nuclear polyadenylated 95.6 0.058 2E-06 40.9 8.5 33 317-349 46-80 (96)
98 2ek1_A RNA-binding protein 12; 95.6 0.022 7.6E-07 43.1 6.1 35 315-349 56-92 (95)
99 2mss_A Protein (musashi1); RNA 95.6 0.04 1.4E-06 39.6 7.2 20 315-334 40-59 (75)
100 2j76_E EIF-4B, EIF4B, eukaryot 95.6 0.044 1.5E-06 42.0 7.6 35 195-235 16-50 (100)
101 2xnq_A Nuclear polyadenylated 95.5 0.11 3.8E-06 39.5 9.8 33 317-349 58-92 (97)
102 2qfj_A FBP-interacting repress 95.5 0.12 4E-06 45.1 11.3 59 315-373 69-146 (216)
103 1u6f_A Tcubp1, RNA-binding pro 95.5 0.058 2E-06 43.9 8.6 36 197-237 41-76 (139)
104 2krb_A Eukaryotic translation 95.5 0.037 1.3E-06 40.5 6.7 24 316-339 47-70 (81)
105 3sde_A Paraspeckle component 1 95.5 0.094 3.2E-06 47.8 10.9 58 317-374 59-118 (261)
106 2dis_A Unnamed protein product 95.5 0.11 3.7E-06 40.2 9.8 35 315-349 51-89 (109)
107 3smz_A Protein raver-1, ribonu 95.4 0.085 2.9E-06 48.5 10.5 59 316-374 57-117 (284)
108 2dnn_A RNA-binding protein 12; 95.3 0.044 1.5E-06 43.1 6.9 32 198-235 16-47 (109)
109 1rk8_A CG8781-PA, CG8781-PA pr 95.2 0.099 3.4E-06 44.1 9.5 38 195-237 69-106 (165)
110 2lea_A Serine/arginine-rich sp 95.2 0.054 1.9E-06 44.2 7.5 35 315-349 88-124 (135)
111 2jvo_A Nucleolar protein 3; nu 95.2 0.099 3.4E-06 40.7 8.7 33 317-349 66-100 (108)
112 1l3k_A Heterogeneous nuclear r 95.2 0.11 3.8E-06 44.5 10.0 37 196-237 11-47 (196)
113 1x4d_A Matrin 3; structural ge 95.2 0.054 1.9E-06 42.0 7.0 35 317-351 53-91 (102)
114 2la4_A Nuclear and cytoplasmic 95.2 0.071 2.4E-06 40.7 7.7 28 196-226 25-52 (101)
115 2diu_A KIAA0430 protein; struc 95.1 0.032 1.1E-06 42.5 5.3 41 317-357 47-89 (96)
116 2adc_A Polypyrimidine tract-bi 95.1 0.15 5.1E-06 45.4 10.9 34 196-234 32-66 (229)
117 2jwn_A Embryonic polyadenylate 95.1 0.085 2.9E-06 42.0 8.3 35 198-237 36-70 (124)
118 2kn4_A Immunoglobulin G-bindin 95.0 0.11 3.8E-06 43.2 8.9 34 316-349 112-147 (158)
119 2wbr_A GW182, gawky, LD47780P; 94.9 0.19 6.4E-06 37.8 9.0 33 317-349 44-78 (89)
120 3tyt_A Heterogeneous nuclear r 94.8 0.18 6.2E-06 44.2 10.3 33 197-234 3-36 (205)
121 2cjk_A Nuclear polyadenylated 94.7 0.045 1.6E-06 45.7 6.0 60 315-374 44-109 (167)
122 3q2s_C Cleavage and polyadenyl 94.7 0.09 3.1E-06 47.1 8.1 38 197-237 67-104 (229)
123 1qm9_A Polypyrimidine tract-bi 94.7 0.15 5.1E-06 44.0 9.3 27 197-226 2-29 (198)
124 1b7f_A Protein (SXL-lethal pro 94.6 0.19 6.5E-06 41.8 9.5 34 316-349 131-168 (168)
125 2qfj_A FBP-interacting repress 94.4 0.2 6.8E-06 43.6 9.6 36 197-237 124-159 (216)
126 2voo_A Lupus LA protein; RNA-b 94.0 0.12 4.2E-06 44.8 7.2 35 198-237 109-143 (193)
127 4f02_A Polyadenylate-binding p 93.8 0.19 6.4E-06 44.1 8.1 35 198-237 103-137 (213)
128 1wel_A RNA-binding protein 12; 93.8 0.086 3E-06 42.1 5.3 34 315-349 66-101 (124)
129 2cjk_A Nuclear polyadenylated 93.6 0.22 7.6E-06 41.3 8.0 34 315-349 128-163 (167)
130 2ghp_A U4/U6 snRNA-associated 93.5 0.29 9.8E-06 45.0 9.3 58 316-375 81-140 (292)
131 3pgw_S U1-70K; protein-RNA com 93.3 0.25 8.7E-06 48.7 8.9 35 316-350 144-180 (437)
132 2g4b_A Splicing factor U2AF 65 93.2 0.74 2.5E-05 38.2 10.7 58 316-374 51-116 (172)
133 3smz_A Protein raver-1, ribonu 93.0 0.35 1.2E-05 44.2 9.0 39 196-239 93-131 (284)
134 2g4b_A Splicing factor U2AF 65 93.0 0.23 8E-06 41.4 7.1 35 197-236 93-127 (172)
135 1jmt_A Splicing factor U2AF 35 92.1 0.45 1.5E-05 36.7 7.1 36 315-350 67-104 (104)
136 3pgw_A U1-A; protein-RNA compl 92.0 1.1 3.8E-05 40.8 10.9 36 196-233 7-43 (282)
137 2yh0_A Splicing factor U2AF 65 91.4 0.95 3.3E-05 38.5 9.3 26 197-225 3-28 (198)
138 2dit_A HIV TAT specific factor 91.4 0.71 2.4E-05 35.9 7.7 45 315-359 63-109 (112)
139 1qm9_A Polypyrimidine tract-bi 91.3 0.68 2.3E-05 39.7 8.2 33 317-349 159-194 (198)
140 3tyt_A Heterogeneous nuclear r 90.8 0.55 1.9E-05 41.0 7.2 24 316-339 165-188 (205)
141 2adc_A Polypyrimidine tract-bi 90.6 1.2 4.1E-05 39.3 9.3 34 317-350 190-226 (229)
142 3pgw_A U1-A; protein-RNA compl 90.6 0.91 3.1E-05 41.3 8.8 23 317-339 245-267 (282)
143 1s79_A Lupus LA protein; RRM, 90.5 0.3 1E-05 37.6 4.6 38 196-238 9-46 (103)
144 3s7r_A Heterogeneous nuclear r 90.5 0.39 1.3E-05 35.2 5.1 39 195-238 8-46 (87)
145 2ywk_A Putative RNA-binding pr 90.3 0.46 1.6E-05 35.5 5.5 39 195-238 13-51 (95)
146 3ucg_A Polyadenylate-binding p 90.1 0.34 1.2E-05 35.7 4.4 36 198-238 6-41 (89)
147 3sde_A Paraspeckle component 1 90.0 1.2 4.1E-05 40.2 9.0 36 197-237 95-130 (261)
148 2dha_A FLJ20171 protein; RRM d 89.4 0.32 1.1E-05 38.9 4.0 40 196-238 21-62 (123)
149 1wg1_A KIAA1579 protein, homol 89.4 0.24 8.4E-06 36.6 3.1 37 316-352 40-78 (88)
150 2d9o_A DNAJ (HSP40) homolog, s 89.1 0.64 2.2E-05 35.6 5.4 35 315-349 53-87 (100)
151 2dgw_A Probable RNA-binding pr 89.0 0.58 2E-05 34.6 5.0 38 195-238 7-44 (91)
152 3d2w_A TAR DNA-binding protein 88.8 0.38 1.3E-05 35.8 3.8 38 195-237 8-45 (89)
153 1sjq_A Polypyrimidine tract-bi 88.3 0.61 2.1E-05 36.2 4.8 37 196-237 14-50 (105)
154 2e5j_A Methenyltetrahydrofolat 88.0 0.97 3.3E-05 33.9 5.8 36 316-351 56-93 (97)
155 2ytc_A PRE-mRNA-splicing facto 87.9 0.76 2.6E-05 33.4 5.0 38 195-237 9-46 (85)
156 1wf0_A TDP-43, TAR DNA-binding 87.7 0.44 1.5E-05 35.1 3.6 36 197-237 4-39 (88)
157 2fc8_A NCL protein; structure 87.6 0.55 1.9E-05 35.6 4.2 35 316-350 54-90 (102)
158 2xs2_A Deleted in azoospermia- 87.5 0.68 2.3E-05 35.1 4.6 38 196-238 7-44 (102)
159 3s6e_A RNA-binding protein 39; 86.9 0.84 2.9E-05 35.9 4.9 36 315-350 54-91 (114)
160 2dh8_A DAZ-associated protein 86.2 0.61 2.1E-05 35.6 3.7 38 196-238 14-51 (105)
161 2cpy_A RNA-binding protein 12; 86.0 0.46 1.6E-05 37.1 3.0 37 196-237 13-50 (114)
162 1fj7_A Nucleolin RBD1, protein 85.9 1.4 4.8E-05 33.2 5.7 34 315-349 57-92 (101)
163 2rs2_A Musashi-1, RNA-binding 85.5 0.71 2.4E-05 35.7 3.8 38 196-238 23-60 (109)
164 2cq1_A PTB-like protein L; RRM 85.4 1.2 4E-05 34.1 4.9 37 196-237 13-49 (101)
165 2cq4_A RNA binding motif prote 85.2 0.76 2.6E-05 35.7 3.9 35 198-237 25-59 (114)
166 2pe8_A Splicing factor 45; RRM 85.2 0.68 2.3E-05 35.7 3.6 36 315-350 55-92 (105)
167 2db1_A Heterogeneous nuclear r 85.1 0.7 2.4E-05 36.3 3.7 40 196-238 15-55 (118)
168 1fxl_A Paraneoplastic encephal 84.9 1.4 4.8E-05 36.1 5.7 60 315-374 43-110 (167)
169 2dnl_A Cytoplasmic polyadenyla 84.8 0.65 2.2E-05 36.2 3.3 28 197-227 7-34 (114)
170 1wez_A HnRNP H', FTP-3, hetero 84.7 0.78 2.7E-05 35.1 3.7 37 196-238 13-49 (102)
171 2fc9_A NCL protein; structure 84.4 1 3.6E-05 33.9 4.3 35 315-349 52-88 (101)
172 2cpx_A Hypothetical protein FL 84.3 1.6 5.6E-05 33.7 5.5 35 315-349 66-102 (115)
173 1iqt_A AUF1, heterogeneous nuc 84.2 0.49 1.7E-05 33.5 2.2 31 200-235 1-31 (75)
174 1fjc_A Nucleolin RBD2, protein 84.0 0.8 2.8E-05 34.2 3.4 35 316-350 53-89 (96)
175 2jvr_A Nucleolar protein 3; RN 83.8 0.95 3.3E-05 35.3 3.8 35 316-350 67-103 (111)
176 3v4m_A Splicing factor U2AF 65 83.6 0.83 2.8E-05 35.2 3.4 36 315-350 58-95 (105)
177 2cqh_A IGF-II mRNA-binding pro 83.6 1.1 3.7E-05 33.2 4.0 34 317-350 45-81 (93)
178 1x5p_A Negative elongation fac 83.2 1.3 4.3E-05 33.2 4.3 35 316-350 49-85 (97)
179 2lmi_A GRSF-1, G-rich sequence 83.1 1 3.4E-05 34.6 3.7 39 196-237 9-48 (107)
180 1x4b_A Heterogeneous nuclear r 83.0 1.1 3.8E-05 34.8 4.0 36 198-238 27-62 (116)
181 1iqt_A AUF1, heterogeneous nuc 81.8 1.1 3.7E-05 31.6 3.2 21 315-335 40-60 (75)
182 2hgl_A HNRPF protein, heteroge 81.3 1.2 4.2E-05 36.1 3.8 40 196-238 42-82 (136)
183 2hgm_A HNRPF protein, heteroge 80.7 1.4 4.9E-05 35.2 3.9 36 196-237 40-77 (126)
184 1sjr_A Polypyrimidine tract-bi 80.4 2.3 7.8E-05 35.7 5.2 33 317-349 85-121 (164)
185 2ytc_A PRE-mRNA-splicing facto 80.1 1.5 5.1E-05 31.7 3.6 21 316-336 48-68 (85)
186 2bz2_A Negative elongation fac 79.8 2.8 9.7E-05 33.0 5.4 35 316-350 73-109 (121)
187 2hzc_A Splicing factor U2AF 65 79.7 2.3 7.8E-05 30.8 4.5 26 197-225 5-30 (87)
188 2m2b_A RNA-binding protein 10; 79.6 1.8 6.2E-05 34.5 4.2 29 196-227 21-49 (131)
189 2ywk_A Putative RNA-binding pr 79.1 1.3 4.5E-05 32.8 3.0 35 315-349 56-92 (95)
190 3nmr_A Cugbp ELAV-like family 78.3 3.6 0.00012 33.9 5.9 60 315-374 46-117 (175)
191 2dgw_A Probable RNA-binding pr 77.7 1.4 4.9E-05 32.4 2.9 34 315-349 49-84 (91)
192 2e5i_A Heterogeneous nuclear r 77.4 4.1 0.00014 32.4 5.6 37 317-353 62-103 (124)
193 3ue2_A Poly(U)-binding-splicin 77.1 1.4 4.7E-05 34.8 2.7 36 316-351 71-108 (118)
194 1fje_B Nucleolin RBD12, protei 77.0 2 7E-05 35.6 4.0 35 315-349 135-171 (175)
195 2dhx_A Poly (ADP-ribose) polym 76.9 3.1 0.00011 31.9 4.5 34 198-234 8-44 (104)
196 1wg1_A KIAA1579 protein, homol 76.4 1.9 6.4E-05 31.6 3.1 33 197-235 4-36 (88)
197 2hgn_A Heterogeneous nuclear r 76.2 1.2 4.2E-05 36.2 2.2 37 196-238 44-80 (139)
198 2lmi_A GRSF-1, G-rich sequence 76.1 2.8 9.6E-05 32.0 4.2 20 315-334 54-73 (107)
199 2diu_A KIAA0430 protein; struc 76.1 3.7 0.00013 31.0 4.7 37 196-233 7-44 (96)
200 1wf0_A TDP-43, TAR DNA-binding 76.0 1 3.5E-05 33.0 1.6 35 316-350 42-76 (88)
201 3ucg_A Polyadenylate-binding p 75.9 2.2 7.5E-05 31.0 3.4 34 315-349 47-82 (89)
202 2cq2_A Hypothetical protein LO 75.7 2.1 7.2E-05 33.6 3.4 23 317-339 64-86 (114)
203 2e5g_A U6 snRNA-specific termi 75.5 2.1 7.1E-05 31.8 3.2 27 197-226 7-33 (94)
204 2cq1_A PTB-like protein L; RRM 75.0 2.3 7.8E-05 32.4 3.4 35 316-350 51-89 (101)
205 3md3_A Nuclear and cytoplasmic 73.6 5.8 0.0002 32.1 5.9 59 315-373 40-108 (166)
206 1wez_A HnRNP H', FTP-3, hetero 72.9 2.3 7.9E-05 32.3 2.9 35 315-350 54-90 (102)
207 3egn_A RNA-binding protein 40; 72.9 2.5 8.6E-05 34.1 3.4 35 315-349 91-127 (143)
208 2jvr_A Nucleolar protein 3; RN 72.4 3.8 0.00013 31.8 4.2 36 196-235 26-61 (111)
209 3d2w_A TAR DNA-binding protein 72.4 1.8 6.3E-05 31.9 2.2 18 315-332 47-64 (89)
210 1l3k_A Heterogeneous nuclear r 72.2 4.2 0.00014 34.3 4.8 38 196-238 102-139 (196)
211 2hzc_A Splicing factor U2AF 65 71.8 2.8 9.6E-05 30.3 3.1 22 316-338 53-74 (87)
212 2fc8_A NCL protein; structure 71.5 4 0.00014 30.5 4.1 36 195-238 12-47 (102)
213 1s79_A Lupus LA protein; RRM, 71.4 2.9 0.0001 31.9 3.2 20 315-334 51-70 (103)
214 1fje_B Nucleolin RBD12, protei 71.4 5.4 0.00019 32.9 5.3 58 315-373 53-120 (175)
215 1sjq_A Polypyrimidine tract-bi 70.9 3.3 0.00011 31.9 3.4 34 316-349 52-89 (105)
216 1x4b_A Heterogeneous nuclear r 70.1 3.6 0.00012 31.7 3.6 34 315-349 68-103 (116)
217 2cqh_A IGF-II mRNA-binding pro 70.1 3.5 0.00012 30.3 3.4 29 196-227 6-34 (93)
218 2e5j_A Methenyltetrahydrofolat 70.0 4.6 0.00016 30.0 4.0 29 196-227 17-45 (97)
219 3zzy_A Polypyrimidine tract-bi 69.3 4.2 0.00014 32.7 3.8 34 318-351 68-105 (130)
220 2e5g_A U6 snRNA-specific termi 69.2 4.4 0.00015 29.9 3.8 33 318-351 47-81 (94)
221 2dh8_A DAZ-associated protein 69.0 2.3 8E-05 32.2 2.2 21 315-335 57-77 (105)
222 2cpy_A RNA-binding protein 12; 68.1 3.1 0.00011 32.2 2.7 21 315-335 56-76 (114)
223 2m2b_A RNA-binding protein 10; 67.8 3.4 0.00012 32.8 3.0 24 315-339 66-89 (131)
224 3u1l_A PRE-mRNA-splicing facto 66.9 6.8 0.00023 35.0 5.1 24 317-340 180-203 (240)
225 2fc9_A NCL protein; structure 66.3 3.9 0.00013 30.6 3.0 27 196-225 13-39 (101)
226 2rs2_A Musashi-1, RNA-binding 66.3 4.4 0.00015 31.0 3.3 35 315-349 66-101 (109)
227 3s7r_A Heterogeneous nuclear r 66.2 3.1 0.00011 30.1 2.3 21 315-335 52-72 (87)
228 1l8d_A DNA double-strand break 66.0 22 0.00076 27.2 7.4 33 275-307 48-86 (112)
229 2hgm_A HNRPF protein, heteroge 65.7 3.2 0.00011 33.1 2.4 21 315-335 83-103 (126)
230 2yh0_A Splicing factor U2AF 65 64.9 8.1 0.00028 32.5 5.1 38 196-238 112-149 (198)
231 2j8a_A Histone-lysine N-methyl 64.9 7.5 0.00026 31.3 4.4 37 199-240 3-43 (136)
232 2dnl_A Cytoplasmic polyadenyla 64.6 4.2 0.00014 31.4 2.9 22 315-336 51-72 (114)
233 2pe8_A Splicing factor 45; RRM 63.5 12 0.00042 28.4 5.4 40 197-238 7-48 (105)
234 2db1_A Heterogeneous nuclear r 62.5 3.6 0.00012 32.1 2.1 20 315-334 60-79 (118)
235 2lcw_A RNA-binding protein FUS 66.1 1.6 5.6E-05 33.8 0.0 28 196-226 5-32 (116)
236 2lcw_A RNA-binding protein FUS 65.9 1.7 5.7E-05 33.8 0.0 35 315-349 56-92 (116)
237 2hgl_A HNRPF protein, heteroge 61.1 3.8 0.00013 33.1 2.1 34 315-349 87-122 (136)
238 2dha_A FLJ20171 protein; RRM d 61.0 3.1 0.00011 33.0 1.5 21 315-335 67-87 (123)
239 2hgn_A Heterogeneous nuclear r 60.9 5.4 0.00018 32.3 3.0 20 315-334 85-104 (139)
240 1fj7_A Nucleolin RBD1, protein 58.7 7.5 0.00026 28.9 3.3 27 197-226 16-42 (101)
241 3ue2_A Poly(U)-binding-splicin 58.6 12 0.00042 29.2 4.6 41 197-239 19-61 (118)
242 3he5_A Synzip1; heterodimeric 57.4 21 0.00071 21.9 4.3 20 283-302 29-48 (49)
243 2dnr_A Synaptojanin-1; RRM dom 57.3 7 0.00024 29.2 2.8 32 317-349 50-83 (91)
244 1fjc_A Nucleolin RBD2, protein 57.2 8.1 0.00028 28.4 3.2 28 195-225 13-40 (96)
245 2cq4_A RNA binding motif prote 56.3 6.2 0.00021 30.2 2.5 23 315-338 66-88 (114)
246 2kn4_A Immunoglobulin G-bindin 55.7 20 0.00069 28.9 5.8 61 315-375 12-93 (158)
247 2cpx_A Hypothetical protein FL 54.9 10 0.00034 28.9 3.5 27 197-226 24-50 (115)
248 3dxb_A Thioredoxin N-terminall 54.7 9.9 0.00034 33.0 3.9 37 315-351 174-212 (222)
249 3egn_A RNA-binding protein 40; 51.0 14 0.00049 29.4 4.0 29 196-227 43-71 (143)
250 2xs2_A Deleted in azoospermia- 48.8 3.5 0.00012 30.9 -0.1 20 315-334 49-68 (102)
251 3tht_A Alkylated DNA repair pr 45.8 14 0.00049 34.8 3.6 22 317-338 57-78 (345)
252 2ghp_A U4/U6 snRNA-associated 44.9 17 0.00058 32.8 4.0 36 197-237 209-245 (292)
253 2dhx_A Poly (ADP-ribose) polym 42.5 50 0.0017 25.2 5.5 45 317-361 48-95 (104)
254 1ufw_A Synaptojanin 2; RNP dom 40.6 16 0.00055 27.4 2.5 22 317-339 59-80 (95)
255 3u1l_A PRE-mRNA-splicing facto 40.1 19 0.00066 32.0 3.3 40 196-237 132-177 (240)
256 1sjr_A Polypyrimidine tract-bi 38.7 33 0.0011 28.5 4.4 33 199-236 47-79 (164)
257 2cq2_A Hypothetical protein LO 37.9 24 0.00083 27.3 3.3 35 197-236 24-60 (114)
258 3zzy_A Polypyrimidine tract-bi 36.4 43 0.0015 26.6 4.6 34 199-237 29-62 (130)
259 2e5i_A Heterogeneous nuclear r 35.2 44 0.0015 26.2 4.4 32 201-237 28-59 (124)
260 3twe_A Alpha4H; unknown functi 34.6 53 0.0018 17.6 3.1 19 290-308 6-24 (27)
261 1wey_A Calcipressin 1; structu 29.2 71 0.0024 24.3 4.4 42 199-240 6-56 (104)
262 2l2t_A Receptor tyrosine-prote 27.2 62 0.0021 20.5 3.1 13 19-31 25-37 (44)
263 2ks1_B Epidermal growth factor 26.6 67 0.0023 20.3 3.2 13 19-31 26-38 (44)
264 2k1k_A Ephrin type-A receptor 26.5 91 0.0031 18.9 3.8 12 19-30 26-37 (38)
265 2ldf_A Sarafotoxin-M, SRTX-M; 24.6 21 0.00071 19.6 0.5 6 354-359 18-23 (26)
266 1edn_A Endothelin-1; signal po 23.7 19 0.00066 19.7 0.3 7 353-359 17-23 (26)
267 2lde_A Sarafotoxin-I3; endothe 23.2 22 0.00076 19.5 0.4 7 353-359 17-23 (26)
268 1whv_A Poly(A)-specific ribonu 23.1 69 0.0023 24.2 3.3 21 317-337 50-70 (100)
269 3ra3_A P1C; coiled coil domain 22.6 1E+02 0.0035 16.6 3.3 19 284-302 2-24 (28)
270 1srb_A Sarafotoxins precursor; 21.8 22 0.00076 19.5 0.3 6 354-359 18-23 (26)
271 1go4_E MAD1 (mitotic arrest de 21.6 2.6E+02 0.0089 21.0 6.5 68 241-309 20-92 (100)
272 1owx_A Lupus LA protein, SS-B, 21.2 67 0.0023 25.1 3.1 39 195-238 15-54 (121)
273 1pfi_A Major coat protein of P 20.6 1.4E+02 0.0046 18.5 3.6 26 5-30 20-45 (46)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0053 Score=46.65 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=29.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPR 353 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~ 353 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|.++.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 35899999999999999998766542 3556777765443
No 2
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.09 E-value=0.0012 Score=50.73 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 233 (414)
....||+|.|||.+.++ +.|+++|+..++-.+.+|
T Consensus 7 ~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v 41 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNI 41 (95)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGE
T ss_pred CccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEE
Confidence 44579999999999876 789999988764334333
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.03 E-value=0.0029 Score=48.90 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=54.7
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEeccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccc
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNANKLAQLVENKKSLRNWLTYYKNTYERTSKKPTTKTGF 276 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~~~~~rp~~r~~~ 276 (414)
...+|+|.|||.+.++ +.|+++|+.. |.|.++.+.+|-.
T Consensus 18 ~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 56 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDKV------------------------------------ 56 (99)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECSS------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecCC------------------------------------
Confidence 3468999999999876 6799999876 4566666544210
Q ss_pred ccccCCcccHHHHHHHHHHHhhHHHHHHHhhhhhccCCCCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 277 WGLWGTRVDAIDYYTAEINKLTEEENAEREKVISDANSIIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 277 ~~~~g~kvdai~y~~~~l~~l~~~I~~~r~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
... ..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 57 --------------------------------tg~---~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 57 --------------------------------AGH---SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp --------------------------------SCC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred --------------------------------CCc---ccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 000 34799999999999999998775442 234566666
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.98 E-value=0.0032 Score=49.73 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=58.0
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEeccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccc
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNANKLAQLVENKKSLRNWLTYYKNTYERTSKKPTTKTG 275 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~~~~~rp~~r~~ 275 (414)
+..+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|-..
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~t---------------------------------- 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPRT---------------------------------- 44 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTTT----------------------------------
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCCC----------------------------------
Confidence 34679999999998776 6799999876 45777776553210
Q ss_pred cccccCCcccHHHHHHHHHHHhhHHHHHHHhhhhhccCCCCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 276 FWGLWGTRVDAIDYYTAEINKLTEEENAEREKVISDANSIIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 276 ~~~~~g~kvdai~y~~~~l~~l~~~I~~~r~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.. ..|.|||+|.+..+|+.|.+.+.... ...+.|+.|+
T Consensus 45 ----------------------------------g~---~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 45 ----------------------------------RK---HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp ----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred ----------------------------------Cc---eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 01 34899999999999999998776553 3446677775
No 5
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.97 E-value=0.0021 Score=48.56 Aligned_cols=37 Identities=11% Similarity=-0.106 Sum_probs=25.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEP 352 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 352 (414)
.|.|||+|.+..+|..|.+.+.... .....|+.|..|
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 4899999999999999998776653 345667665433
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.92 E-value=0.0029 Score=53.13 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=29.9
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEecc
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNA 239 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 239 (414)
+.+||+|.|||.+.++ +.|+++|+..+ .|.++.+.++-
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~G--~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSIG--EIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTTS--CEEEEEEEECT
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhcC--CeEEEEEEeCC
Confidence 3579999999998775 67999998764 57777777654
No 7
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.91 E-value=0.006 Score=46.02 Aligned_cols=35 Identities=11% Similarity=-0.080 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4799999999999999998766542 3445666653
No 8
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.89 E-value=0.008 Score=47.15 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=59.4
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEeccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccc
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNANKLAQLVENKKSLRNWLTYYKNTYERTSKKPTTKT 274 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~~~~~rp~~r~ 274 (414)
....++|+|.|||.+.++ +.|+++|+..+ .|.++.+.++-.
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~~~~---------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPFG--RIESIQLMMDSE---------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTTS--CEEEEEEEEETT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEEcCC----------------------------------
Confidence 345689999999998765 67999998764 466665543210
Q ss_pred ccccccCCcccHHHHHHHHHHHhhHHHHHHHhhhhhccCCCCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCC
Q 015063 275 GFWGLWGTRVDAIDYYTAEINKLTEEENAEREKVISDANSIIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEP 352 (414)
Q Consensus 275 ~~~~~~g~kvdai~y~~~~l~~l~~~I~~~r~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 352 (414)
... ..|.|||+|.+..+|..|.+.+.... ...+.|+.|-+.
T Consensus 64 ----------------------------------~g~---~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 64 ----------------------------------TGR---SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp ----------------------------------TTE---EEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred ----------------------------------CCc---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 001 34899999999999999998776543 355777777655
Q ss_pred CC
Q 015063 353 RD 354 (414)
Q Consensus 353 ~D 354 (414)
.|
T Consensus 107 ~d 108 (108)
T 2jrs_A 107 TD 108 (108)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 9
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.87 E-value=0.0047 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=27.2
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..+|+|.|||.+.++ +.|+++|+.. |.|.++.+++
T Consensus 5 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 5 SGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 458999999999876 6899999887 4566666544
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.85 E-value=0.0022 Score=48.79 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC---CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR---NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~---~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+...+. ......|+.|
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 3589999999999999998765332 2345666665
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.015 Score=44.80 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....++|+|.|||.+.++ +.|+++|+... .|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~v~~v~i 47 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQFG--KILDVEI 47 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGTS--CEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEE
Confidence 345689999999998775 67999998763 4555544
No 12
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.01 Score=45.65 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35899999999999999998766542 345667665
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.74 E-value=0.008 Score=44.51 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.5
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
...++|.|.|||.+.++ +.|+++|+..+ .|.++.+
T Consensus 5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~G--~i~~v~i 39 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQI 39 (85)
T ss_dssp CCSSEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhccC--CEEEEEE
Confidence 45689999999998775 67899998864 4555444
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.012 Score=44.98 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEP 352 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P 352 (414)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3589999999999999999776544 2344666666433
No 15
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.013 Score=44.96 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCcee
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYL 231 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~ 231 (414)
....++|+|.|||.+.++ +.|+++|+...++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~ 45 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVE 45 (99)
T ss_dssp SSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEE
T ss_pred cCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceE
Confidence 345689999999998775 6789999887665553
No 16
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.68 E-value=0.007 Score=45.13 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=26.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 4899999999999999999766542 3345666543
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.67 E-value=0.019 Score=43.93 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=27.2
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....++|+|.|||.+.++ +.|+++|+.. |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i 42 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVM 42 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 345689999999998775 6799999876 34655544
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.67 E-value=0.0079 Score=44.75 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
...++|.|.|||.+.++ +.|+++|+..+ .|.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPFG--RISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhcC--CEeEEEEEe
Confidence 45689999999998775 67999998764 466665543
No 19
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.67 E-value=0.014 Score=45.05 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 379999999999999999876543 23446666664
No 20
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.67 E-value=0.019 Score=44.48 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC-----CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN-----PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~-----~~~~~v~~AP 350 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 34899999999999999998776543 3556777764
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.64 E-value=0.011 Score=45.09 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 43 SKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3589999999999999999876654 23456677764
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.013 Score=45.23 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=26.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4799999999999999998766542 3456666653
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.018 Score=44.59 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35899999999999999998766542 3456777763
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.017 Score=44.77 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh-ccC--CCCCceeeeCCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQ-QSR--NPTIWLTNWAPE 351 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~-~~~--~~~~~~v~~AP~ 351 (414)
..|.|||+|.+..+|..|.+.+ ... ....+.|+.|-.
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 3589999999999999999887 433 234567777643
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.53 E-value=0.012 Score=49.65 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.7
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
.++||+|.|||.+.++ +.|+++|+..+ .|.++.+.++
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~~ 38 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQYG--AVYEINVLRD 38 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTTS--CEEEEEEEEE
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhCC--CEEEEEEEec
Confidence 4689999999999876 67999998864 5777777665
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.51 E-value=0.017 Score=42.46 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... ...+.++.|
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 4799999999999999998765542 234566665
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.51 E-value=0.018 Score=45.70 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4899999999999999998765432 234556655
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.50 E-value=0.021 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--C---CCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--P---TIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~---~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+.... . ..+.|+.|-
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 4799999999999999998776542 2 457777763
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.48 E-value=0.023 Score=44.02 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....+||.|.|||.+.++ +.|+++|+..+ .|.++.+..
T Consensus 20 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~i~~v~i~~ 57 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE---EDIHDKFAEYG--EIKNIHLNL 57 (106)
T ss_dssp BTTBEEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhccC--CeEEEEEEe
Confidence 345689999999998775 67999998874 466655543
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.48 E-value=0.012 Score=44.65 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=26.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35899999999999999998765542 334566665
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.47 E-value=0.015 Score=45.89 Aligned_cols=37 Identities=11% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
+..++|+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGD---QDLLQMFMPFG--NVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCCH---HHHHHHHGGGS--CCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEE
Confidence 45689999999998775 67999998764 355555433
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.46 E-value=0.012 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.9
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
.+..++|.|.|||.+.++ +.|+++|+... .|.++.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~v~~v~i 48 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKYG--KVVKVTI 48 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTTS--CEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEE
Confidence 355689999999998765 67999998764 4555544
No 33
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.45 E-value=0.02 Score=46.38 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCCCcccc
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPRDIFWD 358 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DIiW~ 358 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-.++|....
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 4899999999999999998776543 346788888777776654
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.015 Score=44.54 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 479999999999999999876543 23446676653
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.40 E-value=0.023 Score=43.93 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.2
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....+||+|.|||.+.++ +.|+++|+.. | |.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i 46 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRL 46 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEEC
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEE
Confidence 345689999999998775 6799999876 4 666554
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.02 Score=44.12 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34899999999999999998766543 344666665
No 37
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.39 E-value=0.02 Score=47.97 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=40.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC------CCCCccccCcCCChhHHHHHHHH
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP------EPRDIFWDNLSIPYVELTIRRLL 373 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP------~P~DIiW~Nl~~~~~~r~~R~~~ 373 (414)
.|.|||+|.+..+|..|.+.+.... ...+.++.|. .+.-|.-.||.....+.-++.++
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 4899999999999999998665442 2234455442 34457788888776666666654
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.38 E-value=0.028 Score=44.28 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=28.6
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....+||+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~ 49 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPFG--RISDARVVK 49 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEE
Confidence 345789999999998775 67999998764 466665543
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.015 Score=44.37 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=27.4
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i~~ 39 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTE---ETLKGVFSKVG--AIKSCTISK 39 (98)
T ss_dssp CCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEe
Confidence 4579999999998775 67999998764 466665544
No 40
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.35 E-value=0.02 Score=45.11 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=27.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3799999999999999998776543 3456777764
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.35 E-value=0.015 Score=44.03 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....++|.|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~G--~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKYG--PIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTTS--CEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeeEEEEEE
Confidence 345689999999998765 67999998764 466665543
No 42
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.013 Score=45.85 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=25.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4899999999999999998765542 334556655
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.03 Score=42.74 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=27.6
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCcee-EEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYL-THQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~-~v~i~~ 237 (414)
....+||.|.|||.+.++ +.|+++|+... .+. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATMG--ETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHTT--CCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHhC--CcceEEEEee
Confidence 345689999999998775 67899998864 344 555433
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.02 Score=44.17 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....++|+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G--~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPFG--SISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTTC--CEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhCC--CeEEEEEee
Confidence 345789999999998775 67999998763 466655533
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.28 E-value=0.027 Score=43.97 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=26.9
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....+||+|.|||.+.++ +.|+++|+..+ .|.++.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i 58 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQE---DEIQEKFCDYG--EIKNIHL 58 (110)
T ss_dssp BTTBEEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEE
Confidence 345789999999998775 67999998874 4555443
No 46
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0099 Score=49.69 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.8
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEecc
Q 015063 199 FTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNA 239 (414)
Q Consensus 199 ~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 239 (414)
|||+|.|||.+.++ +.|+++|+..+ .|.++.+.++-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~G--~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVGG--PIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGGS--CEEEEEEECCC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhcC--CeEEEEEEECC
Confidence 69999999998775 67999998874 57777776554
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.24 E-value=0.031 Score=43.57 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=25.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4799999999999999998765542 234556655
No 48
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.22 E-value=0.031 Score=44.75 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 63 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 63 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp BCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 35899999999999999998766542 334566654
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.22 E-value=0.029 Score=43.26 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....++|+|.|||.+.++ +.|+++|+.. + |.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEee
Confidence 345689999999998876 6799999876 4 76766644
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.21 E-value=0.024 Score=44.76 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....+||+|.|||.+.++ +.|+++|+... .|.++.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i 49 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGFG--DIEEAVV 49 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTTS--CEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhCC--CeeEEEE
Confidence 345689999999998775 67999998763 4655544
No 51
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.21 E-value=0.021 Score=47.76 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEeccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccc
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNANKLAQLVENKKSLRNWLTYYKNTYERTSKKPTTKTG 275 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~~~~~rp~~r~~ 275 (414)
...+||+|.|||.+.++ +.|+++|+... .|.++.+.+|-.
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~~~~----------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKSG--DIKKIIMGLDKM----------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEecCC-----------------------------------
Confidence 35689999999998775 67999998874 466665543211
Q ss_pred cccccCCcccHHHHHHHHHHHhhHHHHHHHhhhhhccCCCCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 276 FWGLWGTRVDAIDYYTAEINKLTEEENAEREKVISDANSIIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 276 ~~~~~g~kvdai~y~~~~l~~l~~~I~~~r~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
... ..+.|||+|.+..+|..|.+.+.... ...+.|+.|.
T Consensus 77 ---------------------------------~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 77 ---------------------------------KKT---ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp ---------------------------------TCC---EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred ---------------------------------CCc---cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 000 34799999999999999998765442 3446677664
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.18 E-value=0.033 Score=43.41 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=26.3
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
...+||+|.|||.+.++ +.|+++|+... .|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G--~i~~v~i 47 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQFG--DLKYVRV 47 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTTS--CEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC--CeEEEEE
Confidence 34689999999998775 67999998764 4555544
No 53
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.18 E-value=0.017 Score=44.48 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=27.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4799999999999999998766542 34567777643
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.031 Score=43.07 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=27.6
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhh-cCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCV-NHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~-~~p~~v~~v~i~~ 237 (414)
...++|+|.|||.+.++ +.|+++|+. . |.|.++.+.+
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~ 44 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVL 44 (104)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEE
Confidence 45689999999998775 678999987 5 3466655543
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.16 E-value=0.035 Score=42.41 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 62 ~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 62 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 34899999999999999998765542 234455544
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.16 E-value=0.028 Score=43.56 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
....++|+|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 62 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVH 62 (107)
T ss_dssp CCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 445789999999998775 6789999876 345555553
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.16 E-value=0.035 Score=42.36 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=27.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
+.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 799999999999999998776543 35567777743
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.017 Score=44.40 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35899999999999999998765432 334556655
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.027 Score=43.32 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
...++|+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~G--~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTFG--EVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhcC--CeEEEEEEe
Confidence 34679999999998775 67999998874 466665543
No 60
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.056 Score=40.38 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=25.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 58999999999999999876553 2345666665
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.014 Score=44.55 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEPR 353 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~ 353 (414)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.|.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 489999999999999999876644 23456777775553
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.024 Score=44.24 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
...++|.|.|||.+.++ +.|+++|+...
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 40 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSW---QDLKDHMREAG 40 (108)
T ss_dssp SCCCEEEEESCCSSCCH---HHHHHHHGGGS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 34689999999998775 67899998764
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.09 E-value=0.036 Score=42.86 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=26.2
Q ss_pred CCCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEE
Q 015063 194 RRPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 194 ~~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 233 (414)
..+.+++|.|.|||.+.++ +.|++.|+.. |.|.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v 51 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYV 51 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEE
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEE
Confidence 3456789999999998765 6788999876 445444
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.024 Score=40.89 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=24.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC-CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR-NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~-~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+..... ....+.++.|
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred cCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 3589999999999999999866511 2233455544
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.07 E-value=0.039 Score=41.93 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=25.2
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
+.|||+|.+..+|+.|.+.+... ....+.|+.|
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 58999999999999999876554 2344566665
No 66
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.06 E-value=0.032 Score=44.65 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=26.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 489999999999999999876543 23345666553
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.05 E-value=0.021 Score=44.80 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 62 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 62 PSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35899999999999999998765542 334566665
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.03 E-value=0.024 Score=44.88 Aligned_cols=35 Identities=11% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
...+||+|.|||.+.++ +.|+++|+.. |.|.++.+
T Consensus 38 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i 72 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKV 72 (118)
T ss_dssp CCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 45689999999998775 6799999875 34555544
No 69
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.02 E-value=0.041 Score=41.17 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=24.3
Q ss_pred eEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 318 AAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 318 ~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 8999999999999999876554 2344566665
No 70
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.02 E-value=0.014 Score=44.89 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=26.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--C-CCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--P-TIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~-~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... . ..+.|..|
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 4899999999999999998776543 2 34566665
No 71
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.00 E-value=0.039 Score=42.99 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 799999999999999998765542 2345666653
No 72
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.052 Score=40.75 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
....++|.|.|||.+.++ +.|+++|+...
T Consensus 7 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 35 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTN---QELRAKFEEYG 35 (92)
T ss_dssp CCSSEEEEEESCCSSCCH---HHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 455689999999998765 67888887754
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.97 E-value=0.045 Score=44.33 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=26.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 88 ~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 88 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4899999999999999998766543 344566665
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.034 Score=41.06 Aligned_cols=34 Identities=6% Similarity=0.224 Sum_probs=26.0
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+
T Consensus 4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i 37 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKA 37 (85)
T ss_dssp CCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEE
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 4579999999998775 6799999876 34655554
No 75
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.96 E-value=0.043 Score=42.25 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=24.9
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 48999999999999999876544 23345566653
No 76
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.93 E-value=0.031 Score=45.58 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.2
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
...++|+|.|||.+.++ +.|+++|+... .|.++.+
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~G--~i~~v~i 95 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPFG--DITDIQI 95 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEEC
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhcC--CEEEEEE
Confidence 35689999999998775 67999998864 4555443
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.92 E-value=0.069 Score=41.48 Aligned_cols=34 Identities=12% Similarity=-0.137 Sum_probs=25.3
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 233 (414)
.+..++|+|.|||.+.++ +.|+++|+..+ .|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~fG--~V~~v 45 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVE---ADLVEALEKFG--TICYV 45 (104)
T ss_dssp CCCCSEEEEESCCSSCCH---HHHHHHHTTTS--CEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhCC--CEEEE
Confidence 345689999999998765 67899998763 45443
No 78
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.026 Score=44.39 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
+.|||+|.+..+|..|.+.+.... ...+.|+.|+
T Consensus 47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 579999999999999998776542 3445666664
No 79
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.029 Score=44.84 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=24.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 233 (414)
+..++|+|.|||.+.++ +.|+++|+..+ .|.++
T Consensus 29 ~ps~~LfVgNLp~~vte---~dL~~lF~~fG--~V~~v 61 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTE---GEVISLGLPFG--KVTNL 61 (119)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHHHTTTS--CCCEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEE
Confidence 45689999999998775 67899997763 44444
No 80
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.86 E-value=0.049 Score=43.01 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=29.6
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC----CCCCceeeeCCCCCCcc
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR----NPTIWLTNWAPEPRDIF 356 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP~P~DIi 356 (414)
|.|||+|.+..+|..|.+.+... ....+.|+.|-...++.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 79999999999999999866432 33567777776555554
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.84 E-value=0.036 Score=46.58 Aligned_cols=38 Identities=5% Similarity=-0.073 Sum_probs=28.7
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|+|.|||.+.++ +.|+++|+..++..|.++.+++
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~ 91 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAE 91 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEe
Confidence 3579999999998876 6799999887643677776654
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.83 E-value=0.03 Score=42.47 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCCCc
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPRDI 355 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DI 355 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 3799999999999999998766542 345677777555543
No 83
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.071 Score=40.44 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=26.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC----CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN----PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~----~~~~~v~~A 349 (414)
+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 699999999999999998766542 345677775
No 84
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.81 E-value=0.055 Score=47.70 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=68.2
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEeccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccccc
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNANKLAQLVENKKSLRNWLTYYKNTYERTSKKPTTKTGF 276 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~~L~~l~~~r~~~~~~le~~~~k~~~~~~rp~~r~~~ 276 (414)
..+||.|.|||.+.++ +.|+++|+..+ .|.++.+++|-.
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~G--~I~~v~i~~d~~------------------------------------ 52 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPAG--PILSIRVCRDMI------------------------------------ 52 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECTT------------------------------------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhhC--CEEEEEEecccC------------------------------------
Confidence 3579999999999876 68999998874 577776654211
Q ss_pred ccccCCcccHHHHHHHHHHHhhHHHHHHHhhhhhccCCCCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC----
Q 015063 277 WGLWGTRVDAIDYYTAEINKLTEEENAEREKVISDANSIIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP---- 350 (414)
Q Consensus 277 ~~~~g~kvdai~y~~~~l~~l~~~I~~~r~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP---- 350 (414)
... ..|.|||+|.+..+|..|.+.+.... ...+.+..+.
T Consensus 53 --------------------------------tg~---~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~ 97 (213)
T 4f02_A 53 --------------------------------TRR---SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS 97 (213)
T ss_dssp --------------------------------TCC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred --------------------------------CCC---ccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc
Confidence 000 34899999999999999998765442 1223333332
Q ss_pred ----CCCCccccCcCCChhHHHHHHHHH
Q 015063 351 ----EPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 351 ----~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
...-|.=.||..+..+.-++.++.
T Consensus 98 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 98 LRKSGVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp HHHHCTTEEEEESCCTTCCHHHHHHHHG
T ss_pred ccccccccceECCcccccHHHHHHHHHh
Confidence 233477778877766666666553
No 85
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.81 E-value=0.07 Score=40.29 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEP 352 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P 352 (414)
+.|||+|.+..+|..|.+.+... ....+.|+.|.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 34999999999999999876654 2345778877543
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.07 Score=41.79 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
...++|+|.|||.+.++ +.|+++|+... .|.++.+.
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G--~i~~~~i~ 58 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPFG--QVISTRIL 58 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTTS--CEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CEEEEEEE
Confidence 45679999999998775 67999998763 46555543
No 87
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.76 E-value=0.09 Score=43.48 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=27.3
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
|.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 111 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 111 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 799999999999999998766543 34567777643
No 88
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.76 E-value=0.019 Score=43.03 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=24.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.|.|||+|.+.. |..|.+.+.... .....|+.|.
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 489999999999 999988766543 3445666664
No 89
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.75 E-value=0.05 Score=42.99 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=20.2
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
+.|||+|.+..+|..|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 68999999999999999877654
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.74 E-value=0.049 Score=42.20 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CC-CceeeeCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PT-IWLTNWAPE 351 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~-~~~v~~AP~ 351 (414)
.|.|||+|.+..+|..|.+.+.... .. .+.|+.|-+
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 4899999999999999998766542 22 467777643
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.042 Score=43.07 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
...+||+|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~ 48 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADIL 48 (114)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 44689999999998775 6799999876 346555543
No 92
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.69 E-value=0.044 Score=42.77 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=25.9
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 79999999999999999776554 23445666664
No 93
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.06 Score=42.13 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 45899999999999999998765542 234556654
No 94
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.68 E-value=0.042 Score=47.21 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=29.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCCCc
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPRDI 355 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DI 355 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|..+...
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 170 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGG
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 35899999999999999998765542 345677777544333
No 95
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.68 E-value=0.065 Score=40.94 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=24.7
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 38 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 38 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 79999999999999998866543 2334566654
No 96
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.65 E-value=0.053 Score=41.92 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCCCcccc
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPRDIFWD 358 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DIiW~ 358 (414)
..|.|||+|.+..+|..|.+. .... .....|..| .+.++.|.
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 358999999999999999986 3322 233455555 34555443
No 97
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.058 Score=40.94 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=25.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 699999999999999998765542 344566665
No 98
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.64 E-value=0.022 Score=43.06 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34899999999999999998765442 233444444
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.63 E-value=0.04 Score=39.55 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=17.7
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 40 ~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS
T ss_pred cCcEEEEEECCHHHHHHHHH
Confidence 35899999999999999887
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.56 E-value=0.044 Score=42.02 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
....+||.|.|||.+.++ +.|+++|+.. | |.++.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i 50 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRL 50 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEE
Confidence 345689999999998776 5789999875 4 666554
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.52 E-value=0.11 Score=39.54 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=25.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 799999999999999998765542 334556655
No 102
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.51 E-value=0.12 Score=45.14 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC-----------------CCCCccccCcCCChhHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP-----------------EPRDIFWDNLSIPYVELTIRRLL 373 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP-----------------~P~DIiW~Nl~~~~~~r~~R~~~ 373 (414)
..|.|||+|.+..+|..|.+.+.... ...+.+..+. ...-|.-.||.....+.-++.++
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 35899999999999999998765542 2334444332 22456777777666555555554
No 103
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.50 E-value=0.058 Score=43.94 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.5
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|+|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~G--~i~~v~i~~ 76 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERYG--PIESVKIVC 76 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHHS--CEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcC--CeEEEEEEE
Confidence 4589999999998775 67899998874 466665543
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.49 E-value=0.037 Score=40.52 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=20.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
.|.|||+|.+..+|..|.+.+...
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCc
Confidence 489999999999999999876543
No 105
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.48 E-value=0.094 Score=47.77 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=45.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCCCCccccCcCCChhHHHHHHHHH
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
|.|||+|.+..+|..|.+.+... ....+.+..|.+..-|.=.||.....+.-++.++.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHG
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHH
Confidence 79999999999999999876554 23456778888778888889987776666776654
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.47 E-value=0.11 Score=40.24 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhc--cC--CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQ--SR--NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~--~~--~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+. .. ....+.|+.|
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred cCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 34899999999999999998764 22 2345677765
No 107
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.42 E-value=0.085 Score=48.50 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCCCCccccCcCCChhHHHHHHHHH
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
.|.|||+|.+..+|..|.+.+... ....+.++.+|...-|.=.||..+..+.-++.++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 479999999999999999876554 23456777888877888899987777766666654
No 108
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.044 Score=43.06 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=24.8
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
.++|+|.|||.+.++ +.|+++|+.. .|.++.+
T Consensus 16 ~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i 47 (109)
T 2dnn_A 16 DLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHL 47 (109)
T ss_dssp HHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEE
Confidence 579999999998776 6799999875 2445554
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.24 E-value=0.099 Score=44.08 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....+||+|.|||.+.++ +.|+++|+..+ .|.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~G--~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDYG--EIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcCC--CEEEEEEEe
Confidence 345689999999998765 67999998874 466665543
No 110
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.23 E-value=0.054 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35899999999999999998765543 345667665
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.21 E-value=0.099 Score=40.73 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 799999999999999998765542 334566655
No 112
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.21 E-value=0.11 Score=44.54 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=28.4
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
...++|+|.|||.+.++ +.|+++|+..+ .|.++.+.+
T Consensus 11 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~ 47 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTD---ESLRSHFEQWG--TLTDCVVMR 47 (196)
T ss_dssp GGGGEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCC--CEEEEEEEE
Confidence 45689999999998775 67999998874 466665543
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.19 E-value=0.054 Score=41.97 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=25.6
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC----CCCCceeeeCCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR----NPTIWLTNWAPE 351 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP~ 351 (414)
+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 57999999999999998876543 233466666643
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.071 Score=40.74 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
+..+||.|.|||.+.++ +.|+++|+..+
T Consensus 25 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~G 52 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATE---ADLIPLFQNFG 52 (101)
T ss_dssp SSCCEEEEESCCTTCCH---HHHHHHHHTTS
T ss_pred CCCCEEEEcCCCcccCH---HHHHHHHHhCC
Confidence 45689999999998765 67888887753
No 115
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.15 E-value=0.032 Score=42.50 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=35.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCCCCCccc
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPEPRDIFW 357 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DIiW 357 (414)
|.|||+|.++.+|+.|.+.+.... ...++++.|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998777654 35688999999999863
No 116
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.14 E-value=0.15 Score=45.35 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCceEEEEecCCC-CCCCchHHHHHHHhhhcCCCceeEEE
Q 015063 196 PDQFTVLVRNIPP-DPDESVSEHVQHFFCVNHPDHYLTHQ 234 (414)
Q Consensus 196 ~~~~Tvlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~ 234 (414)
+..+||+|.|||. +.++ +.|+++|+..+ .|.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~G--~i~~v~ 66 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVYG--DVQRVK 66 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHHT--CEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhCC--CeEEEE
Confidence 4568999999999 7765 67899998874 354443
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.12 E-value=0.085 Score=41.98 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=27.0
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 479999999998775 6799999876 4566666544
No 118
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.95 E-value=0.11 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=25.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4899999999999999998765442 334556554
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.95 E-value=0.19 Score=37.75 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
|.|||+|.++.+|..|.+.+...+ .....|+.|
T Consensus 44 GfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 44 GIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 899999999999999998776543 334566666
No 120
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.82 E-value=0.18 Score=44.18 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=24.1
Q ss_pred CceEEEEecCC-CCCCCchHHHHHHHhhhcCCCceeEEE
Q 015063 197 DQFTVLVRNIP-PDPDESVSEHVQHFFCVNHPDHYLTHQ 234 (414)
Q Consensus 197 ~~~Tvlv~~IP-~~~~~~~~~~l~~~f~~~~p~~v~~v~ 234 (414)
...||+|.||| .+.++ +.|++.|+.. |.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~ 36 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVK 36 (205)
T ss_dssp CCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEE
T ss_pred CCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEE
Confidence 45799999999 67665 6789999775 4455543
No 121
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.75 E-value=0.045 Score=45.72 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCCCCCceeeeCC------CCCCccccCcCCChhHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRNPTIWLTNWAP------EPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~~~~~~v~~AP------~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
..|.|||+|.+..+|..|.+....-....+.+..|. .+.-|.=.||..+..+.-++.++.
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~ 109 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFS 109 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHH
T ss_pred ccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHH
Confidence 358999999999999999885221122222333332 233466667776665655666543
No 122
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=94.71 E-value=0.09 Score=47.07 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=28.2
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|+|.|||.+.++ +.|+++|+.+.+..|.++.+++
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~ 104 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFE 104 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEe
Confidence 4569999999998876 6799999887532677776655
No 123
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.68 E-value=0.15 Score=43.96 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.8
Q ss_pred CceEEEEecCCC-CCCCchHHHHHHHhhhcC
Q 015063 197 DQFTVLVRNIPP-DPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 197 ~~~Tvlv~~IP~-~~~~~~~~~l~~~f~~~~ 226 (414)
+++||+|.|||. +.++ +.|+++|+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~G 29 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVYG 29 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTTC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhcC
Confidence 457999999999 7765 67889998764
No 124
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.58 E-value=0.19 Score=41.78 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=25.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCCC----CCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRNP----TIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+..... ..+.|+.|
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 47999999999999999998776532 34555544
No 125
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.39 E-value=0.2 Score=43.62 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=27.2
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+..
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 159 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLAR 159 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEE
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 3579999999998765 6799999876 4566665543
No 126
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.01 E-value=0.12 Score=44.84 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
.+||.|.|||.+.++ +.|+++|+..+ .|.++.+.+
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~G--~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDKG--QVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTSC--CEEEEEEEE
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcCC--CEEEEEEEE
Confidence 479999999998765 77999998864 466666544
No 127
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.78 E-value=0.19 Score=44.14 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=26.4
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..+|.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeec
Confidence 468999999998775 6799999886 3466665543
No 128
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.76 E-value=0.086 Score=42.08 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=24.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+ +.... .....|..|
T Consensus 66 ~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 66 ATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35899999999999999998 54332 234556655
No 129
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.65 E-value=0.22 Score=41.35 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+ .... ......|+.|
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 35899999999999999998 3222 2345667766
No 130
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.51 E-value=0.29 Score=45.04 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCCCCccccCcCCChhHHHHHHHHHH
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEPRDIFWDNLSIPYVELTIRRLLMA 375 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DIiW~Nl~~~~~~r~~R~~~~~ 375 (414)
.|.|||+|.+..+|..|.+ +... ....+.+..++ ..-|.=.||.....+.-++.++..
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCCHHHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCCHHHHHHHHHH
Confidence 3899999999999999996 3322 12334555553 566777888877766667766543
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.27 E-value=0.25 Score=48.66 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4899999999999999998876543 2345666664
No 132
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.23 E-value=0.74 Score=38.24 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC------CCCCccccCcCCChhHHHHHHHHH
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP------EPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP------~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
.|.|||+|.+..+|..|. .+... ....+.++.+. .+.-|.=.||.....+.-++.++.
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 116 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLT 116 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHH
Confidence 389999999999999998 33322 12223343322 235566677776666666666553
No 133
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.05 E-value=0.35 Score=44.24 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEecc
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNA 239 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 239 (414)
+...+|.|.|||.+.++ +.|+++|+..+ .|.++.+.+|-
T Consensus 93 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G--~i~~~~i~~~~ 131 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQ---QQFEELVRPFG--SLERCFLVYSE 131 (284)
T ss_dssp CCSCEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEECT
T ss_pred CCCCEEEEcCCCCcCCH---HHHHHHHHhcC--CeeEEEEEeeC
Confidence 45679999999998775 67999998864 47777776653
No 134
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.97 E-value=0.23 Score=41.44 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=26.3
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
..++|.|.|||.+.++ +.|+++|+.. |.|.++.+.
T Consensus 93 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~ 127 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLV 127 (172)
T ss_dssp TTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEE
T ss_pred CCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEE
Confidence 3579999999998765 6789999876 346555543
No 135
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.09 E-value=0.45 Score=36.71 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=27.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+.... .....++.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 46899999999999999998876542 2334566665
No 136
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=92.01 E-value=1.1 Score=40.77 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCCCCC-chHHHHHHHhhhcCCCceeEE
Q 015063 196 PDQFTVLVRNIPPDPDE-SVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~-~~~~~l~~~f~~~~p~~v~~v 233 (414)
...+||+|.|||.+.++ ++++.|.++|+.. |.|.++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v 43 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDI 43 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEE
Confidence 34679999999998765 2333355777665 344443
No 137
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.45 E-value=0.95 Score=38.52 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=20.8
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhc
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVN 225 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~ 225 (414)
.++||+|.|||.+.++ +.|+++|+..
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 3589999999998775 6788888765
No 138
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.43 E-value=0.71 Score=35.86 Aligned_cols=45 Identities=22% Similarity=0.048 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCCCCccccC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEPRDIFWDN 359 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DIiW~N 359 (414)
..|.|||+|.+..+|..|.+.+... ......++.|.+..|.-++.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4689999999999999999877654 23456777776656654443
No 139
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.28 E-value=0.68 Score=39.69 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=25.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCCC---CCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRNP---TIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~~---~~~~v~~A 349 (414)
|.|||+|.+..+|..|.+.+..... ....+..|
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 7999999999999999998776532 33455554
No 140
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=90.84 E-value=0.55 Score=41.00 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=21.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
.|.|||+|.+..+|..|.+.+...
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 489999999999999999887654
No 141
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.62 E-value=1.2 Score=39.35 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=25.8
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC---CCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN---PTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~---~~~~~v~~AP 350 (414)
|.|||+|.+..+|..|.+.+.... ...+.+..|-
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 699999999999999998776543 3345666653
No 142
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=90.59 E-value=0.91 Score=41.34 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
|.|||+|.+..+|..|.+.+...
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCc
Confidence 69999999999999999887654
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.50 E-value=0.3 Score=37.64 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 9 ~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~d 46 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRT 46 (103)
T ss_dssp SGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEECC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEEC
Confidence 45689999999998775 6799999886 45777777653
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.49 E-value=0.39 Score=35.21 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=30.3
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
....++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 345689999999998775 6799999876 45777777654
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=90.34 E-value=0.46 Score=35.47 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
....++|.|.|||.+.++ +.|+++|+... .|.++.+.+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~G--~i~~v~i~~~ 51 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQAG--PLTKVTICKD 51 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGGS--CEEEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CEEEEEEEEC
Confidence 345689999999998775 67999998874 5777776554
No 146
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=90.11 E-value=0.34 Score=35.69 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=28.6
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 6 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 6 ARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEES
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence 579999999998775 6799999886 45777776654
No 147
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=90.03 E-value=1.2 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
...+|.|.|||...++ +.|+++|+..+ .|.++.+.+
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~G--~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQFG--PVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGGS--CEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhcC--CeEEEEeee
Confidence 3569999999998765 67999998764 566665544
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.45 E-value=0.32 Score=38.91 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC--CceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP--DHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p--~~v~~v~i~~d 238 (414)
...++|+|.|||-+.++ +.|+++|+.+.+ +.+.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 34579999999998776 789999998765 34567777665
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=89.39 E-value=0.24 Score=36.63 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=28.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPEP 352 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P 352 (414)
.|.|||+|.+..+|..|.+.+... ......|+.||..
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 379999999999999999877654 3345677788653
No 150
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.08 E-value=0.64 Score=35.63 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCCCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRNPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.........+.|+.|
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 35899999999999999998754433445666665
No 151
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.99 E-value=0.58 Score=34.63 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
....++|.|.|||.+.++ +.|+++|+.. .+.++.+.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC
Confidence 345689999999998775 6799999876 3667777665
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=88.79 E-value=0.38 Score=35.84 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
.++.+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i~~ 45 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFIPK 45 (89)
T ss_dssp ---CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 456689999999999876 6799999886 4577777654
No 153
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.27 E-value=0.61 Score=36.16 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
+...+|+|.|||.+.++ +.|+++|+.. |.|.++.++.
T Consensus 14 ~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 50 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 50 (105)
T ss_dssp CCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc
Confidence 45679999999998776 6789999887 4587887764
No 154
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.01 E-value=0.97 Score=33.90 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=28.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4899999999999999998776543 35577777643
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.85 E-value=0.76 Score=33.37 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
....+||.|.|||.+.++ +.|+++|+..+ .|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~G--~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQFG--EIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTTS--CEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhCC--CEeEEEEEC
Confidence 345689999999998765 67999998864 477776653
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.74 E-value=0.44 Score=35.13 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=27.9
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..+||.|.|||.+.++ +.|+++|+... .|.++.+.+
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~G--~i~~v~i~~ 39 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQYG--DVMDVFIPK 39 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTTS--CCCEEECCS
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHcC--CeeEEEEec
Confidence 4589999999998776 67999998864 466666543
No 157
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.58 E-value=0.55 Score=35.56 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4799999999999999998766542 3346677664
No 158
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=87.46 E-value=0.68 Score=35.09 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...+||.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 45689999999998775 6799999887 45777776553
No 159
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=86.86 E-value=0.84 Score=35.86 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+.... .....++.+|
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 35999999999999999999887652 2334455544
No 160
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.18 E-value=0.61 Score=35.56 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...++|+|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 45689999999998775 6799999886 45777777654
No 161
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.99 E-value=0.46 Score=37.07 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=27.9
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCce-eEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHY-LTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v-~~v~i~~ 237 (414)
...+||+|.|||.+.++ +.|+++|+.. +.| .++.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i~~ 50 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHVLV 50 (114)
T ss_dssp SCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEECC
T ss_pred CCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEEEE
Confidence 45689999999998775 6799999886 445 4455544
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.94 E-value=1.4 Score=33.19 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+ +.... ...+.|+.|
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45899999999999999998 55442 345667665
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=85.48 E-value=0.71 Score=35.69 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...+||+|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEEC
Confidence 34689999999998775 6799999886 45777766553
No 164
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.36 E-value=1.2 Score=34.14 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=28.7
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
+..++|+|.|||.+.++ +.|+++|+.. |.|.++.+..
T Consensus 13 ~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~~ 49 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILMLK 49 (101)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEC
Confidence 45689999999998765 6799999876 4577776644
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.24 E-value=0.76 Score=35.65 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.6
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
.+||+|.|||.+.++ +.|+++|+.. |.|.++.+.+
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEe
Confidence 479999999998775 6799999876 4577776644
No 166
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=85.20 E-value=0.68 Score=35.74 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+.... .....++.|+
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 35899999999999999999887652 3445667775
No 167
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.12 E-value=0.7 Score=36.34 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCC-ceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPD-HYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~d 238 (414)
...+||+|.|||.+.++ +.|+++|+...+. .|.++.+++|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 34689999999999876 6799999886541 2566666554
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=84.93 E-value=1.4 Score=36.08 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC------CCCccccCcCCChhHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE------PRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~------P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
..|.|||+|.+..+|..|.+.+.... .....+..|.. ..-|.=.||.....+.-++.++.
T Consensus 43 ~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 110 (167)
T 1fxl_A 43 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 110 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHG
T ss_pred ceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHH
Confidence 34799999999999999998765542 23345555432 23477788877666666666543
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.82 E-value=0.65 Score=36.20 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCC
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHP 227 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p 227 (414)
..++|.|.|||.+.++ +.|+++|+...+
T Consensus 7 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~ 34 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDE---DEITASFRRFGP 34 (114)
T ss_dssp CCCCEEEECCCTTCCH---HHHHHHTTTTCC
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhcCC
Confidence 4689999999998775 679999987643
No 170
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.74 E-value=0.78 Score=35.06 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...++|+|.|||.+.++ +.|+++|+... ++++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEEC
Confidence 45689999999998776 67999998765 237777654
No 171
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.36 E-value=1 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3589999999999999999876543 2334566665
No 172
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.35 E-value=1.6 Score=33.66 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35899999999999999998766542 344666665
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=84.24 E-value=0.49 Score=33.49 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=23.8
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 200 TVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 200 Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
||.|.|||.+.++ +.|+++|+..++ |.++.+
T Consensus 1 ~l~v~nLp~~~t~---~~l~~~F~~~G~--i~~v~i 31 (75)
T 1iqt_A 1 KIFVGGLSPDTPE---EKIREYFGGFGE--VESIEL 31 (75)
T ss_dssp CEEESCCCSSCCH---HHHHHHHHHHSC--CSEECC
T ss_pred CEEEeCCCCCCCH---HHHHHHHHhcCC--eEEEEE
Confidence 6899999998775 679999988753 555544
No 174
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=84.00 E-value=0.8 Score=34.17 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 489999999999999999876543 23346677663
No 175
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=83.75 E-value=0.95 Score=35.33 Aligned_cols=35 Identities=6% Similarity=-0.097 Sum_probs=26.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+... ......|+.|.
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 489999999999999999876544 23345666653
No 176
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=83.61 E-value=0.83 Score=35.24 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+.+.... .....++.+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 45899999999999999999887653 2334555554
No 177
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.57 E-value=1.1 Score=33.21 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhcc-C--CCCCceeeeCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQS-R--NPTIWLTNWAP 350 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~-~--~~~~~~v~~AP 350 (414)
+.|||+|.+..+|..|.+.+.. . ....+.|+.|-
T Consensus 45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 45 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 7999999999999999987765 3 23445666653
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.20 E-value=1.3 Score=33.24 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=26.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 350 (414)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 489999999999999999876543 23345666653
No 179
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=83.09 E-value=1 Score=34.64 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC-CceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP-DHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p-~~v~~v~i~~ 237 (414)
...++|+|.|||.+.++ +.|+++|+...+ +.|.++.+.+
T Consensus 9 ~~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~~ 48 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFLL 48 (107)
T ss_dssp SSCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECCC
T ss_pred CCccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEEE
Confidence 45689999999999876 679999987643 2255555543
No 180
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.01 E-value=1.1 Score=34.78 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
.++|+|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 479999999998775 6799999876 45667766554
No 181
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=81.79 E-value=1.1 Score=31.63 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..|.|||+|.+..+|..|.+.
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHh
Confidence 468999999999999999885
No 182
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=81.33 E-value=1.2 Score=36.07 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCC-ceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPD-HYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~d 238 (414)
...++|+|.|||.+.++ +.|+++|+...+- .|.++.+++|
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d 82 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYT 82 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEEC
Confidence 34689999999999876 6799999886531 1556666654
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=80.68 E-value=1.4 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCcee--EEEEEe
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYL--THQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~--~v~i~~ 237 (414)
...++|+|.|||.+.++ +.|+++|+.. + +. ++.+++
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~--~-i~~~~v~i~~ 77 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL--E-IVPNGITLPV 77 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC--C-ceeeEEEEEE
Confidence 34689999999999876 6799999875 3 44 565544
No 184
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=80.42 E-value=2.3 Score=35.72 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=27.2
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCCC----CCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRNP----TIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~A 349 (414)
+.|||+|.+..+|..|.+.+....- ..+.|+.|
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 6899999999999999998876543 45677776
No 185
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.14 E-value=1.5 Score=31.74 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhh
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQ 336 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~ 336 (414)
.|.|||+|.+..+|..|.+.+
T Consensus 48 kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHh
Confidence 489999999999999999866
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=79.76 E-value=2.8 Score=32.98 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4899999999999999998765542 3446666663
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=79.71 E-value=2.3 Score=30.81 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=21.5
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhc
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVN 225 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~ 225 (414)
..+||.|.|||.+.++ +.|+++|+..
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998765 6788888876
No 188
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=79.61 E-value=1.8 Score=34.49 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP 227 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p 227 (414)
....+|+|.|||.+.++ +.|+++|+..++
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~G~ 49 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPYAV 49 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGGCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCC
Confidence 34579999999999876 679999988743
No 189
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.10 E-value=1.3 Score=32.84 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=25.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 56 PKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp EEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45899999999999999998765442 223444444
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=78.26 E-value=3.6 Score=33.88 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC-----CCCceeeeCC-------CCCCccccCcCCChhHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN-----PTIWLTNWAP-------EPRDIFWDNLSIPYVELTIRRLLM 374 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~-----~~~~~v~~AP-------~P~DIiW~Nl~~~~~~r~~R~~~~ 374 (414)
..|.|||+|.+..+|..|.+.+.... .....+..+. +..-|.=.||..+..+.-++.++.
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~ 117 (175)
T 3nmr_A 46 SKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFS 117 (175)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHG
T ss_pred cceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHH
Confidence 45799999999999999998765432 2333444332 334577778877766666666553
No 191
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.73 E-value=1.4 Score=32.36 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=24.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+ +.... .....|..|
T Consensus 49 ~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 49 KTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp EEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 46899999999999999998 55432 234455554
No 192
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.40 E-value=4.1 Score=32.40 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=28.6
Q ss_pred C-eEEEEeCCHHHHHHHHHhhccCCC----CCceeeeCCCCC
Q 015063 317 P-AAFVSFKSRWGAAVCAQTQQSRNP----TIWLTNWAPEPR 353 (414)
Q Consensus 317 ~-~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~AP~P~ 353 (414)
| .|||+|.+..+|..|.+.+....- ..+.|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5 599999999999999998876643 357788775443
No 193
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=77.06 E-value=1.4 Score=34.82 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=27.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
.|.|||+|.+..+|..|.+.+.... .....++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4899999999999999999887653 33455666553
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=77.00 E-value=2 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 56899999999999999999776542 334566666
No 195
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.94 E-value=3.1 Score=31.87 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.5
Q ss_pred ceEEEEecCCCCCCCchHHHHHHHhhh---cCCCceeEEE
Q 015063 198 QFTVLVRNIPPDPDESVSEHVQHFFCV---NHPDHYLTHQ 234 (414)
Q Consensus 198 ~~Tvlv~~IP~~~~~~~~~~l~~~f~~---~~p~~v~~v~ 234 (414)
..+|.|+|+|++.++ +.|+-||++ .+-|.|.++.
T Consensus 8 ~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred ccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 469999999998765 689999987 3556676654
No 196
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=76.36 E-value=1.9 Score=31.61 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=25.6
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
+.++|.|.|||.+.++ +.|+++|+.. .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 4579999999998775 6799999876 3555554
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=76.24 E-value=1.2 Score=36.24 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.6
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...++|.|.|||.+.++ +.|+++|+... ++++.+++|
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEEEC
Confidence 34579999999999876 78999998864 346666543
No 198
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=76.12 E-value=2.8 Score=31.99 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=18.6
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 54 ~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT
T ss_pred EeeEEEEEECCHHHHHHHHH
Confidence 56899999999999999998
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.11 E-value=3.7 Score=31.05 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=26.7
Q ss_pred CCceEEEEecCCCCCCC-chHHHHHHHhhhcCCCceeEE
Q 015063 196 PDQFTVLVRNIPPDPDE-SVSEHVQHFFCVNHPDHYLTH 233 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~-~~~~~l~~~f~~~~p~~v~~v 233 (414)
+++.++.|.|||.+.++ .+++.|++.|++.+ |.|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEE
Confidence 44434889999998764 46777889998863 356665
No 200
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.03 E-value=1 Score=33.03 Aligned_cols=35 Identities=17% Similarity=-0.049 Sum_probs=21.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccCCCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSRNPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~~~~~~~v~~AP 350 (414)
.|.|||+|.+..+|+.+.+....-......+..|.
T Consensus 42 ~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 42 RAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp CSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecC
Confidence 58999999999999765433111133344555553
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=75.88 E-value=2.2 Score=31.05 Aligned_cols=34 Identities=6% Similarity=-0.114 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|. .+.... .....|+.|
T Consensus 47 ~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp CCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 4689999999999999998 544332 234556655
No 202
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.71 E-value=2.1 Score=33.57 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.7
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
|.|||+|.+..+|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999887665
No 203
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.52 E-value=2.1 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
..++|.|.|||.+.++ +.|+++|+...
T Consensus 7 ~~~~l~V~nl~~~~t~---~~l~~~F~~~G 33 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDS---AQLSEYFLAFG 33 (94)
T ss_dssp TCCEEEEECCCTTCCH---HHHHHHGGGTS
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhcC
Confidence 4579999999998775 67899998753
No 204
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.97 E-value=2.3 Score=32.45 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=25.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC----CCCCceeeeCC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR----NPTIWLTNWAP 350 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP 350 (414)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 489999999999999998865422 22345666663
No 205
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=73.63 E-value=5.8 Score=32.14 Aligned_cols=59 Identities=24% Similarity=0.386 Sum_probs=36.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC--------CCCCccccCcCCChhHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP--------EPRDIFWDNLSIPYVELTIRRLL 373 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP--------~P~DIiW~Nl~~~~~~r~~R~~~ 373 (414)
..|.|||+|.+..+|..|.+.+.... .....++.|. ...-|.=.||.....+.-++.++
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 108 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF 108 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHH
Confidence 45799999999999999997665442 2223444332 22235556776655555555543
No 206
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.93 E-value=2.3 Score=32.32 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAP 350 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 350 (414)
..|.|||+|.+..+|..|.+. .... .....|..|.
T Consensus 54 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMAK-DKANMQHRYVELFLNS 90 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHTT-SSCCSSSSCCEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHh-CCCeECCcEEEEEECC
Confidence 457999999999999999964 3221 2334555543
No 207
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=72.92 E-value=2.5 Score=34.09 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35899999999999999998766542 234556655
No 208
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=72.45 E-value=3.8 Score=31.78 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEE
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQV 235 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 235 (414)
...++|.|.|||.+.++ +.|+++|+..++ .|..+.+
T Consensus 26 ~~~~~l~VgnLp~~~te---~dL~~~F~~~G~-~v~~v~i 61 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSW---QDLKDLARENSL-ETTFSSV 61 (111)
T ss_dssp CCCEEEEEECSSCCCCH---HHHHHHHHHHTC-CCSEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHhCC-eeEEEEE
Confidence 35689999999998775 679999998753 4555544
No 209
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=72.36 E-value=1.8 Score=31.91 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCCeEEEEeCCHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVC 332 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a 332 (414)
..|.|||+|.+..+|..+
T Consensus 47 srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 358999999999999843
No 210
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=72.17 E-value=4.2 Score=34.27 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=29.2
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEeec
Confidence 34579999999998775 6799999876 45777777654
No 211
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=71.82 E-value=2.8 Score=30.29 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=18.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhcc
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQS 338 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~ 338 (414)
.|.|||+|.+..+|..|. .+..
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CcEEEEEcCCHHHHHHHH-hcCC
Confidence 589999999999999998 5443
No 212
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.52 E-value=4 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
....+||+|.|||.+.++ +.|+++|+.. .++.+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~-----~~~~~~~~ 47 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTE---ETLKESFDGS-----VRARIVTD 47 (102)
T ss_dssp SCCCSSEEEECCCTTCCH---HHHHHTSTTC-----SEEEEEEC
T ss_pred CCCCCEEEEeCCCCccCH---HHHHHHhcCC-----eEEEEEec
Confidence 345689999999998775 6789998743 24555544
No 213
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.44 E-value=2.9 Score=31.86 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.4
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT
T ss_pred CccEEEEEECCHHHHHHHHH
Confidence 56899999999999999988
No 214
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=71.42 E-value=5.4 Score=32.91 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeCCC--------CCCccccCcCCChhHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWAPE--------PRDIFWDNLSIPYVELTIRRLL 373 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~--------P~DIiW~Nl~~~~~~r~~R~~~ 373 (414)
..|.|||+|.+..+|..|.+ +... ....+.++.|.. ..-|.=.||..+..+.-++.++
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 35899999999999999996 4332 123345554432 2346667777666555555554
No 215
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.88 E-value=3.3 Score=31.94 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhccC----CCCCceeeeC
Q 015063 316 IPAAFVSFKSRWGAAVCAQTQQSR----NPTIWLTNWA 349 (414)
Q Consensus 316 ~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~A 349 (414)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 389999999999999999865432 2234455555
No 216
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.12 E-value=3.6 Score=31.72 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=24.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC--CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR--NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+. ... ....+.|+.|
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred cCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 458999999999999999876 322 2234555555
No 217
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.05 E-value=3.5 Score=30.30 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP 227 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p 227 (414)
...++|.|.|||.+.++ +.|+++|+...+
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~ 34 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTA---DDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCC
Confidence 45679999999998775 679999988754
No 218
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.03 E-value=4.6 Score=29.99 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP 227 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p 227 (414)
...++|.|.|||.+.++ +.|+++|+...+
T Consensus 17 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~G~ 45 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARV---SDLKRALRELGS 45 (97)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhcCC
Confidence 34689999999998775 679999988754
No 219
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=69.34 E-value=4.2 Score=32.67 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=26.9
Q ss_pred eEEEEeCCHHHHHHHHHhhccCCC----CCceeeeCCC
Q 015063 318 AAFVSFKSRWGAAVCAQTQQSRNP----TIWLTNWAPE 351 (414)
Q Consensus 318 ~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~AP~ 351 (414)
.|||+|.+..+|..|.+.+....- ..++++.|-.
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 599999999999999998876543 3467777743
No 220
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.23 E-value=4.4 Score=29.89 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=23.4
Q ss_pred eEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 318 AAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 318 ~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
.|||+|.+..+|..|.+ +.... ...+.|+.|.+
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 89999999999999998 54432 23345555543
No 221
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.00 E-value=2.3 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..+.|||+|.+..+|..|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 347999999999999999886
No 222
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.05 E-value=3.1 Score=32.17 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..|.|||+|.+..+|..|.+.
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 468999999999999999876
No 223
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=67.82 E-value=3.4 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
..|.|||+|.+. +|..|.+.+...
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCC
Confidence 458999999999 999999887665
No 224
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=66.90 E-value=6.8 Score=34.98 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=20.5
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN 340 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~ 340 (414)
|.|||+|.+..+|..|.+.+....
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCE
Confidence 799999999999999988766543
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.27 E-value=3.9 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.5
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhc
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVN 225 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~ 225 (414)
...++|+|.|||.+.++ +.|+++|+..
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 45689999999998775 6799999875
No 226
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=66.25 E-value=4.4 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccC-CCCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSR-NPTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~-~~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+..... ....+.|+.|
T Consensus 66 ~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred cCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 4689999999999999998764211 2234556654
No 227
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=66.19 E-value=3.1 Score=30.12 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..|.|||+|.+..+|..|.+.
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 52 SRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEEEEEESSTHHHHHHHHS
T ss_pred cccEEEEEECCHHHHHHHHHh
Confidence 457999999999999999875
No 228
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.97 E-value=22 Score=27.20 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=21.2
Q ss_pred ccccccCCcccH------HHHHHHHHHHhhHHHHHHHhh
Q 015063 275 GFWGLWGTRVDA------IDYYTAEINKLTEEENAEREK 307 (414)
Q Consensus 275 ~~~~~~g~kvda------i~y~~~~l~~l~~~I~~~r~~ 307 (414)
+.|+.||..++. ++.+..+++.++.++.+.+..
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp EECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888876653 666777777776666655443
No 229
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=65.72 E-value=3.2 Score=33.09 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=19.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..|.|||+|.+..+|..|.+.
T Consensus 83 srGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTT
T ss_pred CceEEEEEECCHHHHHHHHHH
Confidence 579999999999999999885
No 230
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=64.94 E-value=8.1 Score=32.45 Aligned_cols=38 Identities=8% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
...++|.|.|||.+.++ +.|+++|+.. |.|.++.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeec
Confidence 35689999999998765 6799999886 45667766554
No 231
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=64.88 E-value=7.5 Score=31.30 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=28.8
Q ss_pred eEEEEecC----CCCCCCchHHHHHHHhhhcCCCceeEEEEEeccc
Q 015063 199 FTVLVRNI----PPDPDESVSEHVQHFFCVNHPDHYLTHQVVYNAN 240 (414)
Q Consensus 199 ~Tvlv~~I----P~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~~ 240 (414)
..|+|.|+ |...++ +.|++||+.+ |.|.++.+.+|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 47999999 888776 6899999976 4677777776643
No 232
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.58 E-value=4.2 Score=31.38 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQ 336 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~ 336 (414)
..|.|||+|.+..+|+.|.+.+
T Consensus 51 ~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 51 PKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp TTSEEEECCSSHHHHHHHHHHS
T ss_pred cccEEEEEECCHHHHHHHHHhh
Confidence 4589999999999999999876
No 233
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=63.52 E-value=12 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=28.6
Q ss_pred CceEEEEecCCC--CCCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 197 DQFTVLVRNIPP--DPDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 197 ~~~Tvlv~~IP~--~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
.+++|.+.|+.. +.++...+.|++.|++. |.|.++.++.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~ 48 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEI 48 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecC
Confidence 457999999974 23334567899999877 56888888775
No 234
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.52 E-value=3.6 Score=32.09 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=18.4
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 60 ~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGG
T ss_pred CCeEEEEEECCHHHHHHHHh
Confidence 46899999999999999998
No 235
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=66.07 E-value=1.6 Score=33.82 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
...++|+|.|||.+.++ +.|+++|+...
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 32 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQIG 32 (116)
Confidence 34679999999998765 56888887764
No 236
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=65.89 E-value=1.7 Score=33.78 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 45899999999999999988655432 233455554
No 237
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=61.12 E-value=3.8 Score=33.11 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=24.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
..|.|||+|.+..+|..|.+ +.... .....|..|
T Consensus 87 srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 87 QSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp EEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 46899999999999999998 44332 233455555
No 238
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.02 E-value=3.1 Score=33.00 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=19.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHh
Q 015063 315 IIPAAFVSFKSRWGAAVCAQT 335 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~ 335 (414)
..|.|||+|.+..+|..|.+.
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 468999999999999999875
No 239
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=60.85 E-value=5.4 Score=32.33 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 85 srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SSCCCEEECSHHHHHHHHTT
T ss_pred CceEEEEEeCCHHHHHHHHh
Confidence 56899999999999999984
No 240
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=58.66 E-value=7.5 Score=28.93 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
..++|+|.|||.+.++ +.|+++|+...
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~G 42 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISELF 42 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 5689999999998775 66888887653
No 241
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=58.62 E-value=12 Score=29.20 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=31.1
Q ss_pred CceEEEEecCCC--CCCCchHHHHHHHhhhcCCCceeEEEEEecc
Q 015063 197 DQFTVLVRNIPP--DPDESVSEHVQHFFCVNHPDHYLTHQVVYNA 239 (414)
Q Consensus 197 ~~~Tvlv~~IP~--~~~~~~~~~l~~~f~~~~p~~v~~v~i~~d~ 239 (414)
.+++|.+.|+-. +.++++.+.|++.|++. |.|.++.++.|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 457999999854 44456778899999876 568888888764
No 242
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.43 E-value=21 Score=21.92 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHHhhHHHH
Q 015063 283 RVDAIDYYTAEINKLTEEEN 302 (414)
Q Consensus 283 kvdai~y~~~~l~~l~~~I~ 302 (414)
|.|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45789999999988888775
No 243
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.29 E-value=7 Score=29.20 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=22.6
Q ss_pred CeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWA 349 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 349 (414)
+.+||||++..+|..|.+ +.... ....+|++|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 459999999999999988 44332 234566654
No 244
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=57.20 E-value=8.1 Score=28.38 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCCceEEEEecCCCCCCCchHHHHHHHhhhc
Q 015063 195 RPDQFTVLVRNIPPDPDESVSEHVQHFFCVN 225 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~ 225 (414)
....+||.|.|||.+.++ +.|+++|+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 345689999999998775 6789999775
No 245
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.34 E-value=6.2 Score=30.20 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhcc
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQS 338 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~ 338 (414)
..|.|||+|.+..+|..|. .+..
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTT
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCC
Confidence 4689999999999999999 5443
No 246
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=55.66 E-value=20 Score=28.95 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=40.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--C-------------------CCceeeeCCCCCCccccCcCCChhHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--P-------------------TIWLTNWAPEPRDIFWDNLSIPYVELTIRRLL 373 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~-------------------~~~~v~~AP~P~DIiW~Nl~~~~~~r~~R~~~ 373 (414)
..|.|||+|.+..+|..|.+...... . ........+...-|+-.||...-.+.-++.++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 56999999999999999986543210 0 00111122345678888998877777777766
Q ss_pred HH
Q 015063 374 MA 375 (414)
Q Consensus 374 ~~ 375 (414)
..
T Consensus 92 ~~ 93 (158)
T 2kn4_A 92 EK 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 247
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.88 E-value=10 Score=28.95 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=22.0
Q ss_pred CceEEEEecCCCCCCCchHHHHHHHhhhcC
Q 015063 197 DQFTVLVRNIPPDPDESVSEHVQHFFCVNH 226 (414)
Q Consensus 197 ~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~ 226 (414)
..++|+|.|||.+.++ +.|+++|+...
T Consensus 24 ~~~~l~V~nLp~~~t~---~~l~~~f~~~G 50 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTE---RDLVSLFARFQ 50 (115)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHTHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 4589999999998775 67888888764
No 248
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=54.66 E-value=9.9 Score=33.02 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhccCC--CCCceeeeCCC
Q 015063 315 IIPAAFVSFKSRWGAAVCAQTQQSRN--PTIWLTNWAPE 351 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 351 (414)
..|.+||+|.+..+|..|.+.+.... .....++.+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45899999999999999999987653 34556666663
No 249
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=50.96 E-value=14 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCCCCCchHHHHHHHhhhcCC
Q 015063 196 PDQFTVLVRNIPPDPDESVSEHVQHFFCVNHP 227 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p 227 (414)
....+|+|.|||.+.++ +.|+++|+..++
T Consensus 43 ~~~~~l~V~nLp~~~te---~~L~~~F~~~G~ 71 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQE---KDLKYIFGRYVD 71 (143)
T ss_dssp SCCSEEEEEEECTTCCH---HHHHHHHGGGCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCC
Confidence 35679999999998775 679999988753
No 250
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=48.84 E-value=3.5 Score=30.92 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCCeEEEEeCCHHHHHHHHH
Q 015063 315 IIPAAFVSFKSRWGAAVCAQ 334 (414)
Q Consensus 315 ~~~~aFVtF~s~~~A~~a~Q 334 (414)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 45899999999999999988
No 251
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=45.83 E-value=14 Score=34.80 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.8
Q ss_pred CeEEEEeCCHHHHHHHHHhhcc
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQS 338 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~ 338 (414)
|.|||+|++..+|+.|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999987654
No 252
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=44.92 E-value=17 Score=32.78 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=27.6
Q ss_pred CceEEEEecCCCC-CCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 197 DQFTVLVRNIPPD-PDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 197 ~~~Tvlv~~IP~~-~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
..++|.|.|||.+ .++ +.|+++|+.. |.|.++.+.+
T Consensus 209 ~~~~l~v~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~ 245 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDE---NLLRESFEGF--GSIEKINIPA 245 (292)
T ss_dssp TTTEEEEEEECTTTCCH---HHHHHHHGGG--SCEEEEECCS
T ss_pred CCceEEEECCCcccCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 3479999999998 775 6799999886 4566666544
No 253
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.48 E-value=50 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.7
Q ss_pred CeEEEEeCCHHHHHHHHHh-hccCCCCCceeeeCC--CCCCccccCcC
Q 015063 317 PAAFVSFKSRWGAAVCAQT-QQSRNPTIWLTNWAP--EPRDIFWDNLS 361 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~-~~~~~~~~~~v~~AP--~P~DIiW~Nl~ 361 (414)
+.|.|||.+...|+.+.+. .+.-+.....|.+.| +|.-+.-.+|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 7999999999999888775 222234555665533 55555555554
No 254
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.58 E-value=16 Score=27.42 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.2
Q ss_pred CeEEEEeCCHHHHHHHHHhhccC
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQSR 339 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~~~ 339 (414)
+.+||||++..+|..|.+ +...
T Consensus 59 d~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 59 GQMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp TEEEEECSCSHHHHHHHH-GGGS
T ss_pred CcEEEEEcChHHHHHHHh-cCCe
Confidence 569999999999999988 4443
No 255
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=40.06 E-value=19 Score=32.00 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCceEEEEecCCCCCC------CchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 196 PDQFTVLVRNIPPDPD------ESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 196 ~~~~Tvlv~~IP~~~~------~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
...+||.|.|||.+.+ +...+.|+++|++. |.|.++.++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 4568999999998752 11247799999887 5688887764
No 256
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.74 E-value=33 Score=28.53 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=26.2
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 199 FTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 199 ~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
.+|.|.|||.+.++ +.|++.|+.. |.|.++.+.
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~ 79 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITF 79 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEE
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 56789999998775 6799999887 567777764
No 257
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.92 E-value=24 Score=27.34 Aligned_cols=35 Identities=3% Similarity=-0.094 Sum_probs=26.5
Q ss_pred CceEEEE--ecCCCCCCCchHHHHHHHhhhcCCCceeEEEEE
Q 015063 197 DQFTVLV--RNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVV 236 (414)
Q Consensus 197 ~~~Tvlv--~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 236 (414)
..+++.| .|||.+.++ +.|+++|++.+ .|.++.+.
T Consensus 24 pt~~L~V~Ng~L~~~~te---~~L~~~F~~fG--~v~~v~i~ 60 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSR---NQLLPVLEKCG--LVDALLMP 60 (114)
T ss_dssp CCSEEEEETCTGGGTCCH---HHHHHHHHHHS--CEEEEECC
T ss_pred CCCEEEEECCCCCCCCCH---HHHHHHHHhcC--CeEEEEEe
Confidence 4578999 559998776 67999999875 57666553
No 258
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=36.40 E-value=43 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=26.2
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 199 FTVLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 199 ~Tvlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
-.|.|.|+|...++ +.|++.|+.. |.|.+|.+..
T Consensus 29 L~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~ 62 (130)
T 3zzy_A 29 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFT 62 (130)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEE
T ss_pred EEEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEc
Confidence 36669999988775 6799999887 5687876654
No 259
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.17 E-value=44 Score=26.19 Aligned_cols=32 Identities=3% Similarity=-0.163 Sum_probs=24.5
Q ss_pred EEEecCCCCCCCchHHHHHHHhhhcCCCceeEEEEEe
Q 015063 201 VLVRNIPPDPDESVSEHVQHFFCVNHPDHYLTHQVVY 237 (414)
Q Consensus 201 vlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 237 (414)
|.|.|||...++ +.|++.|+.. |.|.++.+..
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 458999988765 6799999886 5687877643
No 260
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.64 E-value=53 Score=17.60 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHHHHHhhh
Q 015063 290 YTAEINKLTEEENAEREKV 308 (414)
Q Consensus 290 ~~~~l~~l~~~I~~~r~~~ 308 (414)
+-++++++++.+.+.|++.
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4467788888888777764
No 261
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.24 E-value=71 Score=24.32 Aligned_cols=42 Identities=7% Similarity=0.175 Sum_probs=28.8
Q ss_pred eEEEEecCCCC--CCCchHHHHHHHhhhcCCCc-------eeEEEEEeccc
Q 015063 199 FTVLVRNIPPD--PDESVSEHVQHFFCVNHPDH-------YLTHQVVYNAN 240 (414)
Q Consensus 199 ~Tvlv~~IP~~--~~~~~~~~l~~~f~~~~p~~-------v~~v~i~~d~~ 240 (414)
.|+.++|+|.+ ..+++++.+++.|....|.. ..++.+.|...
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~ 56 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNP 56 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSST
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCCh
Confidence 48999999885 24457788999998776541 23555666443
No 262
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.17 E-value=62 Score=20.47 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcC
Q 015063 19 FAFLVVFAILRIQ 31 (414)
Q Consensus 19 ~~~l~~F~~lR~~ 31 (414)
++.++.|.++|+|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4446677888876
No 263
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.60 E-value=67 Score=20.30 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcC
Q 015063 19 FAFLVVFAILRIQ 31 (414)
Q Consensus 19 ~~~l~~F~~lR~~ 31 (414)
++.++.|.++|+|
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4456677888876
No 264
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.52 E-value=91 Score=18.93 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhc
Q 015063 19 FAFLVVFAILRI 30 (414)
Q Consensus 19 ~~~l~~F~~lR~ 30 (414)
++..++|.+.||
T Consensus 26 li~~l~~~~~rr 37 (38)
T 2k1k_A 26 LLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHeec
Confidence 344445555554
No 265
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=24.56 E-value=21 Score=19.57 Aligned_cols=6 Identities=50% Similarity=1.586 Sum_probs=3.9
Q ss_pred CccccC
Q 015063 354 DIFWDN 359 (414)
Q Consensus 354 DIiW~N 359 (414)
||||-|
T Consensus 18 DiIWvn 23 (26)
T 2ldf_A 18 DVIWDE 23 (26)
T ss_dssp TCCCSC
T ss_pred cEEEeC
Confidence 666665
No 266
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=23.72 E-value=19 Score=19.74 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=3.6
Q ss_pred CCccccC
Q 015063 353 RDIFWDN 359 (414)
Q Consensus 353 ~DIiW~N 359 (414)
-||||-|
T Consensus 17 ldiIWvn 23 (26)
T 1edn_A 17 LDIIWXX 23 (26)
T ss_dssp TTSCC--
T ss_pred ccEEEee
Confidence 3788877
No 267
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=23.23 E-value=22 Score=19.55 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=4.9
Q ss_pred CCccccC
Q 015063 353 RDIFWDN 359 (414)
Q Consensus 353 ~DIiW~N 359 (414)
-||||-|
T Consensus 17 lDiIWvn 23 (26)
T 2lde_A 17 KDVIWVN 23 (26)
T ss_dssp TTCSTTT
T ss_pred ccEEEec
Confidence 3777776
No 268
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=23.11 E-value=69 Score=24.16 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.3
Q ss_pred CeEEEEeCCHHHHHHHHHhhc
Q 015063 317 PAAFVSFKSRWGAAVCAQTQQ 337 (414)
Q Consensus 317 ~~aFVtF~s~~~A~~a~Q~~~ 337 (414)
.+|||+|++...|+.|..+..
T Consensus 50 TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 599999999999999887653
No 269
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.63 E-value=1e+02 Score=16.64 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=8.5
Q ss_pred ccHHHHH----HHHHHHhhHHHH
Q 015063 284 VDAIDYY----TAEINKLTEEEN 302 (414)
Q Consensus 284 vdai~y~----~~~l~~l~~~I~ 302 (414)
+||+++- ++++..+.++|.
T Consensus 2 idalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHH
Confidence 4565543 334444444443
No 270
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=21.78 E-value=22 Score=19.50 Aligned_cols=6 Identities=33% Similarity=1.287 Sum_probs=3.0
Q ss_pred CccccC
Q 015063 354 DIFWDN 359 (414)
Q Consensus 354 DIiW~N 359 (414)
||||-|
T Consensus 18 DiIWvn 23 (26)
T 1srb_A 18 DVIWXX 23 (26)
T ss_dssp CCCC--
T ss_pred cEEEee
Confidence 777766
No 271
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.59 E-value=2.6e+02 Score=20.98 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcc---CC-CCcccccccccc-CCcccHHHHHHHHHHHhhHHHHHHHhhhh
Q 015063 241 KLAQLVENKKSLRNWLTYYKNTYERT---SK-KPTTKTGFWGLW-GTRVDAIDYYTAEINKLTEEENAEREKVI 309 (414)
Q Consensus 241 ~L~~l~~~r~~~~~~le~~~~k~~~~---~~-rp~~r~~~~~~~-g~kvdai~y~~~~l~~l~~~I~~~r~~~~ 309 (414)
++.+|..+++++.+..+.++.+.++. +. -| .+.....+. ..-..|.+--++++++|+++++..|..+.
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~-~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ-SRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT-TTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-ccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777666555554431 11 11 011111111 11223444567788888999888888754
No 272
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.22 E-value=67 Score=25.14 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CCCceEEEEecCCCC-CCCchHHHHHHHhhhcCCCceeEEEEEec
Q 015063 195 RPDQFTVLVRNIPPD-PDESVSEHVQHFFCVNHPDHYLTHQVVYN 238 (414)
Q Consensus 195 ~~~~~Tvlv~~IP~~-~~~~~~~~l~~~f~~~~p~~v~~v~i~~d 238 (414)
.+.-..|.|.|+|.+ .+ .+.|++.|++. |.|..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g 54 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRG 54 (121)
T ss_dssp CCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTT
T ss_pred ccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecC
Confidence 345568999999998 65 47899999875 34665655443
No 273
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=20.57 E-value=1.4e+02 Score=18.50 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 015063 5 KDIGVSAAINLLSAFAFLVVFAILRI 30 (414)
Q Consensus 5 ~~~~t~l~~~~~~~~~~l~~F~~lR~ 30 (414)
+++.+.++=.+++-.+.=++|+.+|+
T Consensus 20 ~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 20 KAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444455555666678999996
Done!