BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015064
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0788 PE=3 SV=1
Length = 308
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
K++ + L ++ +++ S P++K A + M P +F VRF ++ + FLPF+ W D
Sbjct: 39 KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96
Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
G ++G+ LGY + +GL + A A FI+ V++ P+ ++ +
Sbjct: 97 ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152
Query: 240 GVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
GVL++ +G L S ++GD L A+FFG + SR
Sbjct: 153 GVLLAFVGFYFLS-GYSGFNIGDILMLFCALFFGAEIAMISHYSR 196
>sp|Q9UYC6|LONB_PYRAB Archaeal Lon protease OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=lon PE=3 SV=1
Length = 998
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 102 SESVQIITKRPFWKRVLFASKKIRSIFLLNVITI-------------VYASDIPILKAAE 148
+E+V+++TK F K +L+A+K+I L V+ + VY +D LK A
Sbjct: 270 NENVEVLTKDGFTK-LLYANKRIGKQKLRRVVNLEKDYWFALTPDHKVYTTDG--LKEAG 326
Query: 149 EIMHPASFCAVRFV--------MSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEA 200
EI +V + I LP DD + R +G+ + G E
Sbjct: 327 EITEKDELISVPITVFDCEDEDLKKIGLLPL---TSDDERLRKIATLMGILFNGGSIDEG 383
Query: 201 LGLLTSDAGRASFISLFTVIVVPLF 225
LG+LT + R S I F + + LF
Sbjct: 384 LGVLTLKSER-SVIEKFVITLKELF 407
>sp|O31493|YDZE_BACSU Putative permease-like protein YdzE OS=Bacillus subtilis (strain
168) GN=ydzE PE=5 SV=1
Length = 78
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
+Y GI ST + ++ ++A+ + + +PL G W LLGE+ WIG+ L
Sbjct: 1 MYLGIVSTACAFLLWNHGLQLLNASSGGLFFFFQPLVGTLLGWILLGEQIGGTFWIGSFL 60
Query: 405 VLD 407
+L
Sbjct: 61 ILS 63
>sp|Q68XV0|SAM_RICTY S-adenosylmethionine uptake transporter OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=sam PE=3 SV=1
Length = 294
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 40/273 (14%)
Query: 151 MHPASFCAVRFVMSAIPFLPF-VFWARDDVKTRNAGIEL--GLWVSLGYFVEALGLLTSD 207
+H RF+ S+I LPF V++ + +KTR+ I + GL + G GL +
Sbjct: 36 LHSFEVAFFRFLFSSIVLLPFVVYYGKSTLKTRHPVIHVLRGLLLFFGMTSWTYGLTIAP 95
Query: 208 AGRASFISLFTVIVVPLFDGMLGAIIPAHT-----WFGVLISALG-VGMLECSGSPPSVG 261
A+ IS +PLF +L I W ++ +G V ML+ P
Sbjct: 96 VTTATVISF----SIPLFTLILAVFILNENIIWQRWVVTVVGFIGLVVMLK-----PHTK 146
Query: 262 DF-LNFLSAIFFGIHMLRTERISRS-TKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS 319
DF L I I + I++ KE+ L +L Y V A++S S
Sbjct: 147 DFNPEILYLILAAISFAMLDIINKKFVVKESMLSMLFYSAIVTAIVS---------LPVS 197
Query: 320 QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEP 379
++ +P ++ + L+ S L+ + A V AT TA LE
Sbjct: 198 MEYWITPSSFEL-----------TLLFVLGSSGSFILFFLLKAFTMVDATATAPYRYLEL 246
Query: 380 LWGAGFAWFLLGERWSTAGWIGAALVLDVQIFL 412
+ A A+F+ E + GA +++ +F+
Sbjct: 247 VISAIAAYFIFNEFPDKSTAHGAVIIIPATLFI 279
>sp|Q5JWR5|DOP1_HUMAN Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=2 SV=1
Length = 2465
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 325 SPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLW--G 382
SP T LW P + T + + + E+ A D+S T + GLE + G
Sbjct: 2232 SPQHLTSLW---------PTMITELVQVFLLMEQELTADEDISRTSGPSVAGLETTYTGG 2282
Query: 383 AGFAWFLLGERWSTAGWIGAALVLDVQIFLP 413
GF+ +RW ++ A LD+ + LP
Sbjct: 2283 NGFSTSYNSQRWLNL-YLSACKFLDLALALP 2312
>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200
PE=2 SV=1
Length = 383
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 345 LYTGIFSTGICLWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAAL 404
LY GI ++G+ ++++ + A+ L+ L A A+ +LG++ + G +GA
Sbjct: 276 LYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVF 335
Query: 405 VL 406
++
Sbjct: 336 IM 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,315,866
Number of Sequences: 539616
Number of extensions: 5936697
Number of successful extensions: 16716
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16701
Number of HSP's gapped (non-prelim): 31
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)