Query 015064
Match_columns 414
No_of_seqs 208 out of 1537
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 1.7E-08 5.9E-13 85.1 5.8 68 346-413 34-102 (137)
2 3b5d_A Multidrug transporter E 98.5 2.8E-07 9.4E-12 74.8 8.5 68 346-413 34-102 (110)
3 3b5d_A Multidrug transporter E 98.4 4.5E-06 1.5E-10 67.6 13.3 101 126-255 3-105 (110)
4 2i68_A Protein EMRE; transmemb 98.2 7.2E-06 2.5E-10 69.0 9.0 65 190-254 38-104 (137)
5 2lur_A Kalata; beta hairpin, p 10.9 65 0.0022 18.1 0.3 12 34-45 11-22 (29)
6 4gns_B Protein CSD3, chitin bi 9.3 93 0.0032 32.9 1.1 13 42-54 132-144 (754)
7 4dx5_A Acriflavine resistance 7.8 9.7E+02 0.033 25.9 8.6 51 356-406 885-935 (1057)
8 2l2t_A Receptor tyrosine-prote 7.5 2.6E+02 0.0089 17.9 2.2 6 171-176 31-36 (44)
9 3tn2_A C-C motif chemokine 4; 6.2 1.6E+02 0.0053 20.7 0.7 11 42-52 8-18 (68)
10 4dx5_A Acriflavine resistance 6.0 1.1E+03 0.038 25.4 7.9 49 358-406 354-402 (1057)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.69 E-value=1.7e-08 Score=85.07 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064 346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP 413 (414)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~ 413 (414)
.+++++++++|.+|.+++|+.+++++.++ ..+.|+++.+++++++||++++.+++|+++|++|+++.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999 899999999999999999999999999999999998753
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.53 E-value=2.8e-07 Score=74.84 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHH-hhhHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhhhccc
Q 015064 346 YTGIFSTGICLWIEIAAMRDVSATETAII-YGLEPLWGAGFAWFLLGERWSTAGWIGAALVLDVQIFLP 413 (414)
Q Consensus 346 ~lgv~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi~g~~l~~ 413 (414)
..++++.++++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||++++.+++|..+|++|+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46777888999999999999999999998 899999999999999999999999999999999998753
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=4.5e-06 Score=67.60 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 015064 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (414)
Q Consensus 126 g~l~~lla~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~al~~ 205 (414)
.+++++++.++-.......|...+ .. ...+.+...+....++.++.+++++
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~-~~----------------------------~~~~~~~~~~~~~~~~~~~~~al~~ 53 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG-FT----------------------------RLWPSVGTIICYCASFWLLAQTLAY 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-cc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777776421 10 1112222234457888999999999
Q ss_pred cchhHHHHH-HhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhcccC
Q 015064 206 SDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG 255 (414)
Q Consensus 206 ~~~~~a~~l-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~~ 255 (414)
.|.+.+..+ ..+.|+++.+++. ++||+++..+++|+.+.+.|++++...+
T Consensus 54 ~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 54 IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999887 7999999999998 7999999999999999999999987543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.16 E-value=7.2e-06 Score=68.96 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHH-HhhHHHHHHHHHH-HhcccCchhHHHHHHHHHHhhhhhccc
Q 015064 190 LWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS 254 (414)
Q Consensus 190 l~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pl~~~ll~~-~l~er~~~~~~~gi~l~~~Gv~li~~~ 254 (414)
+...++++++.+++++.|++.+..+ .++.|+++.++++ +++|+++..+++|+++.++|++++...
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4466888999999999999999888 8999999999998 799999999999999999999998754
No 5
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=10.86 E-value=65 Score=18.12 Aligned_cols=12 Identities=50% Similarity=1.035 Sum_probs=9.5
Q ss_pred Eecccccccccc
Q 015064 34 VTTDCTCSISSC 45 (414)
Q Consensus 34 ~~~~~~~~~~~~ 45 (414)
-|..|+||-.-|
T Consensus 11 ntpgc~cswpvc 22 (29)
T 2lur_A 11 NTPGCTCSWPVC 22 (29)
T ss_dssp CBTTBEEETTEE
T ss_pred CCCCcEecCccc
Confidence 467899998877
No 6
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=9.27 E-value=93 Score=32.92 Aligned_cols=13 Identities=62% Similarity=1.484 Sum_probs=10.1
Q ss_pred ccccccccccccc
Q 015064 42 ISSCCFNFFSNVT 54 (414)
Q Consensus 42 ~~~~~~~~~~~~~ 54 (414)
+.-||||.||+..
T Consensus 132 ~tyC~yNaFsk~D 144 (754)
T 4gns_B 132 LTYCCFNFFSNLD 144 (754)
T ss_dssp EEEEEEETTTTEE
T ss_pred EEEEeccccccce
Confidence 3469999999853
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.83 E-value=9.7e+02 Score=25.87 Aligned_cols=51 Identities=14% Similarity=-0.053 Sum_probs=34.0
Q ss_pred HHHHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 015064 356 LWIEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406 (414)
Q Consensus 356 ~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi 406 (414)
|.+.....+........++....-+.+.+.+..++|..++...++|..+++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 444445555555555555555555556666777899999999998876654
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.53 E-value=2.6e+02 Score=17.93 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.4
Q ss_pred HHHHhc
Q 015064 171 FVFWAR 176 (414)
Q Consensus 171 ~~~~~~ 176 (414)
+++++|
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333443
No 9
>3tn2_A C-C motif chemokine 4; cytokine; 1.60A {Homo sapiens} PDB: 1hum_A 1hun_A 2x6l_A 3kkh_A 1je4_A 2ffk_B 2fin_B
Probab=6.18 E-value=1.6e+02 Score=20.69 Aligned_cols=11 Identities=27% Similarity=1.120 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 015064 42 ISSCCFNFFSN 52 (414)
Q Consensus 42 ~~~~~~~~~~~ 52 (414)
-.+|||++.++
T Consensus 8 p~~CC~~~~~~ 18 (68)
T 3tn2_A 8 ATACCFSYTAR 18 (68)
T ss_dssp TTCBCSSCCSS
T ss_pred CCccccCccCC
Confidence 45799987654
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=6.01 E-value=1.1e+03 Score=25.37 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=29.3
Q ss_pred HHHHHhccCChhHHHHHhhhHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 015064 358 IEIAAMRDVSATETAIIYGLEPLWGAGFAWFLLGERWSTAGWIGAALVL 406 (414)
Q Consensus 358 l~~~al~~~~a~~~s~~~~l~pv~a~l~~~~~lge~~s~~~~iG~~LIi 406 (414)
+....++.........+....-+...+....++|..++...++|..+.+
T Consensus 354 vl~~~~~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 354 VMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 3333444444444444444444444555666789999999988876554
Done!