Your job contains 1 sequence.
>015066
MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL
NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT
AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER
CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV
DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR
VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
RQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPADD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015066
(414 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 1560 3.6e-160 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 306 2.8e-27 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 300 2.7e-26 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 264 1.6e-20 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 247 1.5e-18 2
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 246 2.8e-18 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 239 1.7e-17 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 238 2.2e-17 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 238 2.2e-17 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 233 9.3e-17 2
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 232 1.1e-16 1
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 226 1.8e-16 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 226 5.3e-16 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 225 6.6e-16 1
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 224 1.3e-15 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 212 9.1e-15 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 213 1.6e-14 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 157 9.2e-11 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 161 2.3e-10 2
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 175 3.1e-10 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 145 1.9e-09 1
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 167 5.6e-09 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 160 2.1e-08 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 156 5.8e-08 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 130 8.0e-08 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 130 8.0e-08 1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 122 5.9e-07 1
TAIR|locus:2119946 - symbol:emb2726 "embryo defective 272... 145 6.3e-07 2
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 147 1.1e-06 1
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 147 1.1e-06 1
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 144 1.4e-06 1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 142 1.6e-06 2
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 145 3.8e-06 2
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n... 140 4.0e-06 1
UNIPROTKB|Q9KNL6 - symbol:VC_2716 "Putative uncharacteriz... 139 4.9e-06 1
TIGR_CMR|VC_2716 - symbol:VC_2716 "conserved hypothetical... 139 4.9e-06 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 140 8.8e-06 2
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 140 8.8e-06 2
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot... 137 9.1e-06 1
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n... 137 9.1e-06 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 136 9.1e-06 1
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n... 134 1.6e-05 1
UNIPROTKB|Q74GL1 - symbol:tex "S1 RNA-binding domain-cont... 134 1.7e-05 1
TIGR_CMR|GSU_0235 - symbol:GSU_0235 "S1 RNA binding domai... 134 1.7e-05 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 138 1.9e-05 2
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 137 2.4e-05 2
UNIPROTKB|Q88AQ9 - symbol:PSPTO_0327 "S1 RNA binding doma... 131 3.7e-05 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 130 4.3e-05 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 139 4.8e-05 2
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot... 126 0.00012 1
POMBASE|SPCC1183.07 - symbol:SPCC1183.07 "U3 snoRNP-assoc... 128 0.00012 3
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 130 0.00012 1
CGD|CAL0004768 - symbol:PRP22 species:5476 "Candida albic... 127 0.00014 1
UNIPROTKB|Q5LKS3 - symbol:Q5LKS3 "S1 RNA binding domain p... 125 0.00017 1
TIGR_CMR|SPO_A0306 - symbol:SPO_A0306 "S1 RNA binding dom... 125 0.00017 1
TIGR_CMR|CPS_4965 - symbol:CPS_4965 "putative transcripti... 126 0.00020 2
UNIPROTKB|H9KZI9 - symbol:LOC100858239 "Uncharacterized p... 123 0.00024 1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 123 0.00026 1
UNIPROTKB|Q8E8N3 - symbol:tex "Transcriptional accessory ... 123 0.00029 1
TIGR_CMR|SO_4629 - symbol:SO_4629 "conserved hypothetical... 123 0.00029 1
UNIPROTKB|F1P306 - symbol:LOC100858239 "Uncharacterized p... 123 0.00046 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 126 0.00059 2
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 117 0.00060 2
TAIR|locus:2063093 - symbol:AT2G40290 species:3702 "Arabi... 115 0.00064 1
FB|FBgn0086895 - symbol:pea "peanuts" species:7227 "Droso... 121 0.00082 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 115 0.00098 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 115 0.00098 2
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
Identities = 315/417 (75%), Positives = 360/417 (86%)
Query: 1 MATLAQQFTGLRCPPISHT-RLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
MA+LAQQF+GLRC P+S + RLSRR S Q K ++ + TIV+AVA+S+ +T+ER E
Sbjct: 1 MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNK--SASVSPTIVAAVAMSSGQTKERLE 58
Query: 60 LNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L ++FE+AYERCRT+PMEGV+FT+++F +A+E+YDFNSE+GT+VKGTVF TD GALVDI
Sbjct: 59 LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 118
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
+AKSSAYL ++ACIH+IKHVEEAGIVPG+ EEFVIIGENE+DDSL+LSLR IQYELAWE
Sbjct: 119 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 178
Query: 180 RCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
RCRQLQ+ED LRGFVPFSQISSK+ AEELL K++PLKFVE
Sbjct: 179 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 238
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 239 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 298
Query: 300 RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 359
RV+DIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT
Sbjct: 299 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 358
Query: 360 FRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLT--DISPADD 414
FRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL +LP DG+DLT DI A D
Sbjct: 359 FRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSAVD 415
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 83/258 (32%), Positives = 136/258 (52%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E + + H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISE--LANV-HIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVP 215
I E D LVLS R + E AW ++ + +RGF+P
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQE-KFNSGHVFDVTVKDIVNGGLVVDLGVRGFIP 129
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----G 265
S + + + GK L +K VE+D E++R++LS++ + DS+ + I G
Sbjct: 130 ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER 325
VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS D +
Sbjct: 190 DVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADT 249
Query: 326 GRVSLSTKKLEPTPGDMI 343
R+SLS K +P P + +
Sbjct: 250 QRISLSIKAAQPGPWENV 267
Score = 168 (64.2 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 82/331 (24%), Positives = 151/331 (45%)
Query: 26 SITQIQQK--LLN-SRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFT 82
S+T++++K L+N K ++ ++N + ++ +L ++ E + +E
Sbjct: 24 SVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVEL-DQTLE-LKVIKLEENDLV 81
Query: 83 LEEFHSALEKY------DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
L + EK FNS G TV N G +VD+ + ++P A + +
Sbjct: 82 LSKRAVDAEKAWVELQEKFNS--GHVFDVTVKDIVNGGLVVDLGVRG--FIP---ASLVE 134
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDXXXXX 193
+ +VE+ G I+ + + ++LS + +++ EL ++ + S E
Sbjct: 135 VHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEG 194
Query: 194 XXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVL 249
+ G V SQIS + + E+L G+ + +K + VD + R+ L
Sbjct: 195 TVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISL 254
Query: 250 SNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADI 304
S + A +G G + G V+ L +GAF++I G+ GL+HVSQI++ V +
Sbjct: 255 SIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNP 314
Query: 305 ATVLQPGDTLKVMILS-HDRERGRVSLSTKK 334
VL+ G +KV +L H E+ R+SLS K+
Sbjct: 315 NEVLEMGQEVKVKVLEVHVAEK-RISLSIKE 344
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 300 (110.7 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 84/283 (29%), Positives = 145/283 (51%)
Query: 73 TAPMEGVSF--TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
T+P V+ + E+F +A++K Y FN G V+GT+ D L+DI K+ +
Sbjct: 7 TSPQVAVNDIGSSEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVI 63
Query: 128 PTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
P +E I H + E + G + E +++ + + + L+LS + QYE AW L+
Sbjct: 64 PARELSIKHDVDPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKE 121
Query: 187 EDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
+D LRGF+P S + + + +GK++ K +E+D+ +
Sbjct: 122 KDEAVKGTVIEVVKGGLILDIG-LRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+ +VLS R + +Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSEL 240
Query: 297 SHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
S + + V+Q GD + V +L D +R RVSLS K + P
Sbjct: 241 SWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 67/245 (27%), Positives = 113/245 (46%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLRG--FLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K E++ G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L P+GAF+ + GI GL+H+S+++ V V+ GD V ++ D ER R+S
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359
Query: 330 LSTKK 334
LS K+
Sbjct: 360 LSLKQ 364
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 264 (98.0 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 73/274 (26%), Positives = 133/274 (48%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 5 SMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXX 199
E I G + E + A V+S M + E AW+R + ++D
Sbjct: 61 GEAPEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 120
Query: 200 XXXXXXXXXXLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +L
Sbjct: 181 SRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPNEILN 240
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
G+T+KV ++ +++ R+SL K+L+ P D++
Sbjct: 241 IGETVKVQVIKINKDTHRISLGMKQLQEDPWDLV 274
Score = 156 (60.0 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 62/272 (22%), Positives = 126/272 (46%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 96 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 148
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDXXXXXXXXXXXX 200
G + GLK+ F I+ + ++V+S R I E E+ ++ +E
Sbjct: 149 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQTVDGVVKNITE 208
Query: 201 XXXXXXXXXLRGFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
+ G + + ++ + E+L G+ + ++ ++++++ R+ L ++
Sbjct: 209 YGAFVDLGGVDGLLHVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQLQE 268
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV-ADIATVLQP 310
D +G + SV G V ++ YGAF+++ G+ GL+HVS++S + ++
Sbjct: 269 DPWDLVGAKYPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVST 328
Query: 311 GDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 342
++VM+L D + RVSL K+ P ++
Sbjct: 329 SQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEV 360
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 56/248 (22%), Positives = 106/248 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V GA VD+ T A ++ H E + G + +I N
Sbjct: 196 GQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAW-RRVNHPNEILNI-GETVKVQVIKIN 253
Query: 160 EADDSLVLSLRMIQYELAWERC-RQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+ + L ++ +Q E W+ + E + G V S+
Sbjct: 254 KDTHRISLGMKQLQ-EDPWDLVGAKYPLESVHTGRVTNITDYGAFVELEPGVEGLVHVSE 312
Query: 219 IS-SKSTAE--ELLG--KDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVI 269
+S +K +++ +++ + +E+D + R+ L ++ M + G+VV
Sbjct: 313 MSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEVFAETHPEGTVVE 372
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDRERGR 327
G V+++ +G FI + G I+G++H+S +S D R D + GD +K ++ D ++ R
Sbjct: 373 GEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVKAVVSEVDIDKER 432
Query: 328 VSLSTKKL 335
+SLS K +
Sbjct: 433 ISLSIKSV 440
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 247 (92.0 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 71/271 (26%), Positives = 129/271 (47%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE-EAG 144
F +L++ + + G+ ++GT+ + +VD KS + + I + K+ E
Sbjct: 9 FEESLKEIE--TRPGSIIRGTIVAVNKDNVIVDAGLKSESVIS-----IDQFKNAAGEVE 61
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXX 204
+V G + + + ++ +LS + AW+ + E
Sbjct: 62 VVVGDEIDVALDATDDGFGETILSREKAKRHEAWQVLEKAYEEKETVIGVINGKVKGGFT 121
Query: 205 XXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+R F+P S + + + L GK L K +++D++++ +V+S R + A+ A+
Sbjct: 122 VEVSDIRAFLPGSLVDVRPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAE 181
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G V G V++L YGAF+D+GGI+GLLH++ ++ RV + ++ GD +
Sbjct: 182 RDELLESLAEGQEVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKRVKHPSEIVNVGDEI 241
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
+V +L DRER RVSL K+L P I N
Sbjct: 242 QVKVLKFDRERTRVSLGMKQLGEDPWVAIAN 272
Score = 155 (59.6 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 57/228 (25%), Positives = 110/228 (48%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G EF +I ++ +++V+S R +I+ E + ER
Sbjct: 129 AFLP---GSLVDVRPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAERDEL 185
Query: 184 LQS--EDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L+S E + G + + ++ K E++ G ++ +K
Sbjct: 186 LESLAEGQEVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + GS + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGMKQLGEDPWVAIANRYPEGSKLSGRVTNLTDYGCFVEIQEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GDT++V++L D ER R+SL K+ P
Sbjct: 306 VSEMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANP 353
Score = 153 (58.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 38/119 (31%), Positives = 65/119 (54%)
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI 284
LG + + +E+DEE+ R+ L ++ +A+ + G V G ++S+ +G FI +
Sbjct: 324 LGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNKGDKVSGKIKSITDFGIFIGL 383
Query: 285 -GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 342
GGI+GL+H+S IS + + GD + ++L D ER R+SL K+ E P +M
Sbjct: 384 DGGIDGLVHLSDISWAGGEEAVRDYKKGDEIDAIVLQVDPERERISLGVKQAEDDPFNM 442
Score = 53 (23.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 35 LNSRKNKTIVSAVAISNAE-TREREELNQLFEEAYE 69
L+ ++N +VS A+ AE + ER+EL + E E
Sbjct: 159 LDQKRNNVVVSRRAVIEAEGSAERDELLESLAEGQE 194
Score = 41 (19.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 49 ISNAETREREELNQLFEEAYERCRT 73
I + E +R E Q+ E+AYE T
Sbjct: 83 ILSREKAKRHEAWQVLEKAYEEKET 107
Score = 39 (18.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 58 EELNQLFEEAYERCRTAP 75
E QLFEE+ + T P
Sbjct: 3 ENFAQLFEESLKEIETRP 20
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 246 (91.7 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 74/268 (27%), Positives = 127/268 (47%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
EF ++ + +G VKG V N LVDI KS +P +E ++EAG
Sbjct: 32 EFAELFQESIRHHHVGEVVKGKVVHISNDYVLVDIGYKSEGSIPVEE-------FLDEAG 84
Query: 145 -IVPGLKEEFVIIGENEADDS--LVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXX 201
+ + +E + E + + VLS R AW+ E
Sbjct: 85 NLTVQVGDEVKALFERKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKG 144
Query: 202 XXXXXXXXLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
++ F+P SQ+ + ++ +G K +++++++ +VLS R + + +
Sbjct: 145 GLTVDIG-VQAFLPASQVDLRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEER 203
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
A L G G V+++ YGAF+DIGG++GLLHV+ +S R+ + +L+PG
Sbjct: 204 AGVRTETLANLAEGQTREGVVKNITDYGAFVDIGGVDGLLHVTDMSWGRLGHPSEMLKPG 263
Query: 312 DTLKVMILSHDRERGRVSLSTKKLEPTP 339
D L V IL +D+E+G++SL K++ P P
Sbjct: 264 DKLSVKILKYDQEKGKISLGLKQITPDP 291
Score = 164 (62.8 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 67/256 (26%), Positives = 111/256 (43%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +G V + GA VDI L + ++ H E + PG K I+ +
Sbjct: 217 GQTREGVVKNITDYGAFVDIGGVDGL-LHVTDMSWGRLGHPSEM-LKPGDKLSVKILKYD 274
Query: 160 EADDSLVLSLRMIQYELAWERCRQ-LQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+ + L L+ I + W Q Q D + G V S+
Sbjct: 275 QEKGKISLGLKQITPD-PWLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSE 333
Query: 219 IS-SKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVI 269
+S +K +LL G ++ + +D R+ L ++A A+ QL +G+ +
Sbjct: 334 MSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQAQANPWTQLEEKYPVGTKLE 393
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDRERGR 327
G ++S+ +G FI + GI+GL+HVS IS R+ V G T++ ++L+ D E R
Sbjct: 394 GQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENER 453
Query: 328 VSLSTKKLEPTPGDMI 343
+SL K+L P P +I
Sbjct: 454 LSLGIKQLTPDPWSVI 469
Score = 157 (60.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 66/280 (23%), Positives = 123/280 (43%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
SA + D G V+G + G VDI + A+LP + + ++++
Sbjct: 119 SAWDSIDAAGGEGGIVEGKITGKVKGGLTVDIGVQ--AFLPASQVDLRPGGNLDK---YI 173
Query: 148 GLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDXXXXXXXXXXXXXXXX 204
G+ + F ++ N+ ++VLS R +++ E A R L + E
Sbjct: 174 GVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAF 233
Query: 205 XXXXXLRGFVPFSQIS--SKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-- 258
+ G + + +S E+L G L +K ++ D+E+ ++ L ++ D
Sbjct: 234 VDIGGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWL 293
Query: 259 --QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTL 314
+ + +G V G V S+ YGAF+ + G+ GL+HVS++S R+ + +L GD +
Sbjct: 294 AVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEV 353
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAE 354
+ ++L D R+SL K+ + P + V K E
Sbjct: 354 ETVVLGIDTGNRRISLGLKQAQANPWTQLEEKYPVGTKLE 393
Score = 147 (56.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 61/251 (24%), Positives = 107/251 (42%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G +V G V + GA V + + E + +++H + + G + E V++
Sbjct: 300 QVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDL-LTVGDEVETVVL 358
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXX-LRGFVP 215
G + + + L L+ Q W + + + G V
Sbjct: 359 GIDTGNRRISLGLKQAQAN-PWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVH 417
Query: 216 FSQIS-SKSTAE--ELLGKDLPLKFV--EVDEEQSRLVLSNRKAMADSQAQLGI----GS 266
S IS +K E+ K ++ V VD E RL L ++ D + + G+
Sbjct: 418 VSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIKQLTPDPWSVIPATYRPGT 477
Query: 267 VVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER 325
V G V S+ +G F++I GI GL+HVS++S ++VA GD L ++LS D
Sbjct: 478 RVRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDELDAVVLSVDDVE 537
Query: 326 GRVSLSTKKLE 336
+++LS K L+
Sbjct: 538 KKIALSVKALQ 548
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 239 (89.2 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 70/264 (26%), Positives = 125/264 (47%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F +L+ +F G+ V+GTV +N LVD KS + +P ++ + V E +
Sbjct: 9 FEQSLQTLEFRP--GSIVRGTVVAIENGMVLVDAGLKSESPIPAEQ--FKNAQGVLEIAV 64
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXX 205
G + + + + LS + AW + +
Sbjct: 65 --GDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTV 122
Query: 206 XXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ- 261
+R F+P S + + + L K+L K +++D++++ +V+S R + ++S A+
Sbjct: 123 ELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAER 182
Query: 262 ------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD +
Sbjct: 183 DALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIN 242
Query: 316 VMILSHDRERGRVSLSTKKLEPTP 339
V +L +DRER RVSL K+L P
Sbjct: 243 VKVLKYDRERTRVSLGLKQLGEDP 266
Score = 158 (60.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 64/256 (25%), Positives = 111/256 (43%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G VKG V + GA VD+ T A ++KH E V G + +
Sbjct: 188 NLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAW-KRVKHPSEIVNV-GDEINVKV 245
Query: 156 IGENEADDSLVLSLRMIQYELAW-ERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFV 214
+ + + L L+ + E W E ++ + G V
Sbjct: 246 LKYDRERTRVSLGLKQLG-EDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 215 PFSQI--SSKSTAEEL---LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIG 265
S++ ++K+ LG ++ + +++DEE+ R+ L ++ D + G
Sbjct: 305 HVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKG 364
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVA-DIATVLQPGDTLKVMILSHDR 323
V G ++S+ +G FI + GGI+GL+H+S IS + D + + GD + ++LS D
Sbjct: 365 DKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDP 424
Query: 324 ERGRVSLSTKKLEPTP 339
ER R+SL K+ E P
Sbjct: 425 ERERISLGVKQTEDDP 440
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 51/206 (24%), Positives = 102/206 (49%)
Query: 150 KE-EFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDXXXXXXXXXXXXXXXXX 205
KE EF +I ++ +++V+S R +I+ E + ER L++ E
Sbjct: 150 KELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFV 209
Query: 206 XXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261
+ G + + ++ K E++ G ++ +K ++ D E++R+ L ++ D +
Sbjct: 210 DLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLE 269
Query: 262 LGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLK 315
+ + + G V +L YG F++I G+ GL+HVS++ ++ + V+ GD ++
Sbjct: 270 ISKRYPENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVE 329
Query: 316 VMILSHDRERGRVSLSTKKLEPTPGD 341
V++L D ER R+SL K+ + P D
Sbjct: 330 VLVLDIDEERRRISLGLKQCKTNPWD 355
Score = 136 (52.9 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 64/279 (22%), Positives = 114/279 (40%)
Query: 68 YERCRTAPMEGVSFTLEEFHSALEK-YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY 126
Y+R RT G+ E+ + K Y N TK+ G V + G V+I
Sbjct: 248 YDRERTRVSLGLKQLGEDPWLEISKRYPEN----TKLTGRVTNLTDYGCFVEIEEGVEGL 303
Query: 127 LPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWER-CRQL 184
+ E K++ + +V G + E +++ +E + L L+ + W+ +
Sbjct: 304 VHVSEMDWTN-KNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTN-PWDDFATRY 361
Query: 185 QSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELL-----GKDLPLKFVE 239
D + G V S IS T E+ + G ++ +
Sbjct: 362 NKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLS 421
Query: 240 VDEEQSRLVLSNRKAMADS-QAQLGI---GSVVIGTVQSLKPYGAFIDIGG-INGLLHVS 294
VD E+ R+ L ++ D A L G++V GTV ++ G +++ + G + V+
Sbjct: 422 VDPERERISLGVKQTEDDPFNAYLADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVA 481
Query: 295 QISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
IS +R+ D +TV GD ++ + DR+ +SLS K
Sbjct: 482 DISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIK 520
Score = 42 (19.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 35 LNSRKNKTIVSAVAISNAETR-EREELNQLFEE 66
L+ ++N +VS A+ +E+ ER+ L + +E
Sbjct: 159 LDQKRNNVVVSRRAVIESESSAERDALLENLQE 191
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 238 (88.8 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 72/270 (26%), Positives = 127/270 (47%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
E F E++ + + GT VKGTV +N LVD KS + +P ++ K+
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQ-----FKNAA 57
Query: 142 -EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + G + + + + LS + AW + E
Sbjct: 58 GELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVK 117
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
+R F+P S + + + L K+L K +++D++++ +V+S R+A+ +S
Sbjct: 118 GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIES 176
Query: 259 QAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
++ L G+ V G V++L YGAF+D+GG++GLLH++ ++ RV + ++
Sbjct: 177 ESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GD + V +L DR+R RVSL K+L P
Sbjct: 237 VGDEILVKVLKFDRDRTRVSLGLKQLGEDP 266
Score = 154 (59.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 38/118 (32%), Positives = 70/118 (59%)
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMAD-----SQAQLGIGSVVIGTVQSLKPYGAFID 283
+G ++ + +++DEE+ R+ L ++ A+ ++AQ G V G ++S+ +G FI
Sbjct: 324 VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIG 382
Query: 284 I-GGINGLLHVSQISHDRVADIAT-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+ GGI+GL+H+S IS + + A + GD + ++L+ D ER R+SL K++E P
Sbjct: 383 LEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDP 440
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 52/228 (22%), Positives = 109/228 (47%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ + + + + EF +I ++ +++V+S R +I+ E + ER
Sbjct: 129 AFLP---GSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDEL 185
Query: 184 LQS--EDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + G + + ++ K E++ G ++ +K
Sbjct: 186 LETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D +++R+ L ++ D + G + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 134 (52.2 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 56/246 (22%), Positives = 104/246 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G K+ G V + G V+I + E K++ + +V G + E +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W+ + Q++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVV 268
IS EE + G ++ + VD E+ R+ L ++ D A + G++V
Sbjct: 395 DISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALV 454
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGR 327
GTV ++ GA I++ G+ G + S++S DR+ D + +L GD ++ DR+
Sbjct: 455 NGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRV 514
Query: 328 VSLSTK 333
++LS K
Sbjct: 515 INLSIK 520
Score = 55 (24.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 15 PISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETR-EREELNQLFEEAYE 69
PI T K + + + L+ ++N +VS A+ +E+ ER+EL + +E E
Sbjct: 140 PIRDTAHLENKEL-EFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTE 194
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 238 (88.8 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 72/270 (26%), Positives = 127/270 (47%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
E F E++ + + GT VKGTV +N LVD KS + +P ++ K+
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQ-----FKNAA 57
Query: 142 -EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + G + + + + LS + AW + E
Sbjct: 58 GELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVK 117
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
+R F+P S + + + L K+L K +++D++++ +V+S R+A+ +S
Sbjct: 118 GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIES 176
Query: 259 QAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
++ L G+ V G V++L YGAF+D+GG++GLLH++ ++ RV + ++
Sbjct: 177 ESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GD + V +L DR+R RVSL K+L P
Sbjct: 237 VGDEILVKVLKFDRDRTRVSLGLKQLGEDP 266
Score = 154 (59.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 38/118 (32%), Positives = 70/118 (59%)
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMAD-----SQAQLGIGSVVIGTVQSLKPYGAFID 283
+G ++ + +++DEE+ R+ L ++ A+ ++AQ G V G ++S+ +G FI
Sbjct: 324 VGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQAK-GDKVTGKIKSITDFGIFIG 382
Query: 284 I-GGINGLLHVSQISHDRVADIAT-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+ GGI+GL+H+S IS + + A + GD + ++L+ D ER R+SL K++E P
Sbjct: 383 LEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDP 440
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 52/228 (22%), Positives = 109/228 (47%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ + + + + EF +I ++ +++V+S R +I+ E + ER
Sbjct: 129 AFLP---GSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVERDEL 185
Query: 184 LQS--EDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + G + + ++ K E++ G ++ +K
Sbjct: 186 LETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEILVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D +++R+ L ++ D + G + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 134 (52.2 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 56/246 (22%), Positives = 104/246 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G K+ G V + G V+I + E K++ + +V G + E +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W+ + Q++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVV 268
IS EE + G ++ + VD E+ R+ L ++ D A + G++V
Sbjct: 395 DISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALV 454
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGR 327
GTV ++ GA I++ G+ G + S++S DR+ D + +L GD ++ DR+
Sbjct: 455 NGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVEAKFTGVDRKNRV 514
Query: 328 VSLSTK 333
++LS K
Sbjct: 515 INLSIK 520
Score = 55 (24.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 15 PISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETR-EREELNQLFEEAYE 69
PI T K + + + L+ ++N +VS A+ +E+ ER+EL + +E E
Sbjct: 140 PIRDTAHLENKEL-EFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTE 194
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 233 (87.1 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 69/265 (26%), Positives = 126/265 (47%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE-EAG 144
F +L++ + + G+ V+G V D LVD KS + +P ++ K+ + E
Sbjct: 9 FEESLKEIE--TRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQ-----FKNAQGELE 61
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXX 204
I G + + + + +LS + AW + +
Sbjct: 62 IQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFT 121
Query: 205 XXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+R F+P S + + + L GK+L K +++D++++ +V+S R + +++ A+
Sbjct: 122 VELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAE 181
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD +
Sbjct: 182 RDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
Query: 315 KVMILSHDRERGRVSLSTKKLEPTP 339
V +L DRER RVSL K+L P
Sbjct: 242 TVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 139 (54.0 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 61/257 (23%), Positives = 106/257 (41%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
GTK+ G V + G V+I + E K++ + +V G E +++
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W++ + ++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD---SQAQLGI-GSVV 268
IS EE + G ++ ++VD E+ R+ L ++ D + L G++V
Sbjct: 395 DISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIV 454
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGR 327
G V ++ GA +++ G+ G L S+ S DRV D VL GD ++ DR+
Sbjct: 455 TGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRA 514
Query: 328 VSLSTK-KLEPTPGDMI 343
+SLS + K E D I
Sbjct: 515 ISLSVRAKDEADEKDAI 531
Score = 49 (22.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 35 LNSRKNKTIVSAVAISNAE-TREREELNQLFEEAYE 69
L+ ++N +VS A+ +E + ER++L + +E E
Sbjct: 159 LDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Score = 39 (18.8 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 58 EELNQLFEEAYERCRTAP 75
E QLFEE+ + T P
Sbjct: 3 ESFAQLFEESLKEIETRP 20
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 72/273 (26%), Positives = 134/273 (49%)
Query: 85 EFHSALEKY-DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EF AL+++ D + + G ++GT+ C D +D KS + + +E + +
Sbjct: 44 EFQHALKEFIDDSVKEGQIIEGTIICIDKGYVTIDSGLKSESIVSLKEFELGD----DYQ 99
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSL-RMIQYELAWERCRQLQSEDXXXXXXXXXXXXXX 202
I G K + + + S+VLS + I+ EL W++ + +
Sbjct: 100 NISIGSKVKLYLEKIEGRNGSVVLSREKAIRDEL-WQKLEEAAEKKEDVEGVIFSSIKCG 158
Query: 203 XXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR----KAMA 256
+ F+P S ++ + + LLGK + +++D++Q +V+S + +++A
Sbjct: 159 YTVDIKGVVAFLPASHVALRQVKDITPLLGKKQKFRILKMDKKQGNIVVSRKAILEESLA 218
Query: 257 DSQA----QLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADIAT 306
D+++ QL G ++ G V+S+ YG FI+I G ++GLLH++ IS RV+ +
Sbjct: 219 DAKSLYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSA 278
Query: 307 VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
V G T+K I+ DRE ++SL K+LE +P
Sbjct: 279 VFSCGQTVKTKIIKIDRENKKISLGVKQLEESP 311
Score = 143 (55.4 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 35/132 (26%), Positives = 73/132 (55%)
Query: 214 VPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVI 269
+ +S++S S G+ + K +++D E ++ L ++ ++ + + + S+
Sbjct: 268 ISWSRVSHPSAVFSC-GQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIHK 326
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVA-DIATVLQPGDTLKVMILSHDRERGR 327
G V S++ YG F+++ GI GL+HVS++S + + I + G+ ++V +LS D + R
Sbjct: 327 GIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSR 386
Query: 328 VSLSTKKLEPTP 339
+SLS K+ + P
Sbjct: 387 MSLSMKRCQDNP 398
Score = 46 (21.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 24/99 (24%), Positives = 40/99 (40%)
Query: 52 AETREREELNQLFEEAYERCR-TAPMEGVSFTLEEFHSALEKY-DFNSELGTKVKGTVFC 109
AE +E E +F +C T ++GV L H AL + D LG K K +
Sbjct: 141 AEKKEDVE-GVIFSSI--KCGYTVDIKGVVAFLPASHVALRQVKDITPLLGKKQKFRILK 197
Query: 110 TDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
D + + ++ K+ +A + + E I+ G
Sbjct: 198 MDKKQGNIVVSRKAILEESLADAKSLYLSQLNEGDIIEG 236
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 15 PISHTRLSRRKSITQI---QQKL----LNSRKNKTIVSAVAISNAETREREEL--NQLFE 65
P SH L + K IT + +QK ++ ++ +VS AI + + L +QL E
Sbjct: 171 PASHVALRQVKDITPLLGKKQKFRILKMDKKQGNIVVSRKAILEESLADAKSLYLSQLNE 230
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 226 (84.6 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/129 (40%), Positives = 81/129 (62%)
Query: 218 QISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLK 276
Q S A+ L+G LP+K V+ DEE +L+LS + A+ +Q + +G V G V S++
Sbjct: 148 QKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVE 207
Query: 277 PYGAFI----DIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSL 330
YGAFI D G + GL+HVS++S D V D+ VL+ GD ++V++ + D+E+ R++L
Sbjct: 208 DYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITL 267
Query: 331 STKKLEPTP 339
S K+LE P
Sbjct: 268 SIKQLEDDP 276
Score = 141 (54.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/101 (36%), Positives = 59/101 (58%)
Query: 210 LRGFVPFSQIS-SKST----------AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
L GF+P+ Q+S S+S A+ L+G LP+K V+ DEE +L+LS + A+
Sbjct: 129 LVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPK 188
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+Q + +G V G V S++ YGAFI + +GL H++ + H
Sbjct: 189 YSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVH 229
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 226 (84.6 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 73/281 (25%), Positives = 129/281 (45%)
Query: 77 EGVSFTLEE--FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
+GV LEE F LE +D + E T +G + N VDI KS L E
Sbjct: 10 DGVDDYLEEEDFGQLLEAFDKSREEAT-TEGVIVEIKNDEVYVDIGKKSEGILALSEIQG 68
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS--EDXXXX 192
K + G +K ++G + SL+ + ++ E E + Q +D
Sbjct: 69 DNSKLLFNVG--DSIK--VAVMG-SRGGRSLLSHKKALRKEKVIEFIKNYQENQDDIFTV 123
Query: 193 XXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
+ F+P SQ K T ++GK +K +++D+++ +++S +
Sbjct: 124 KVVGKNKGGLIVVDENDVEFFLPKSQYGFKET-NNIIGKTFKVKIIKIDKDEQSIIVSRK 182
Query: 253 KAMADSQAQLG--IGSV------VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
K + D + + I +V + G V+ + YG F+D+GG++GL+H S+IS+ +
Sbjct: 183 KTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVDVGGVDGLVHYSEISYKGPVNP 242
Query: 305 ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
T+ + GD + V ++ +D+ER +SLS K P P I++
Sbjct: 243 GTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKD 283
Score = 168 (64.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 43/139 (30%), Positives = 74/139 (53%)
Query: 210 LRGFVPFSQIS-SKS--TAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQA 260
+ GF+ S+IS K+ ++ + G+++ ++ +E++ + RL +S R ++ +
Sbjct: 311 IEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMK 370
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILS 320
I VV G + S+ +GAF+ +GGI GLLH S DR GD +KV I+
Sbjct: 371 SYKIADVVEGEITSVTSFGAFVKLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIK 430
Query: 321 HDRERGRVSLSTKKLEPTP 339
D E ++SLS K+L +P
Sbjct: 431 IDEENQKISLSAKELNSSP 449
Score = 159 (61.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 42/140 (30%), Positives = 75/140 (53%)
Query: 212 GFVPFSQISSKSTAEE-LLGKD---LPLKFVEVDEEQSRLVLSNRKAMADSQAQ----LG 263
G V +S+IS K L K+ +P+K ++ D+E+ L LS + A+ D ++ L
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLD 286
Query: 264 IGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDR-VADIATVLQPGDTLKVMILSH 321
+G + V +++PYGAF+D+G I G LH+S+IS D+ + + + G + V ++
Sbjct: 287 VGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEI 346
Query: 322 DRERGRVSLSTKKLEPTPGD 341
+ R+ +S + L P D
Sbjct: 347 NPNERRLRVSLRNLLSRPFD 366
Score = 128 (50.1 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 29/111 (26%), Positives = 62/111 (55%)
Query: 230 GKDLPLKFVEVDEEQSRLVLSNRK---AMADSQAQLG-IGSVVIGTVQSLKPYGAFIDIG 285
G + +K +++DEE ++ LS ++ + A++ +G +V GT++ +K +G F+++
Sbjct: 421 GDKIKVKIIKIDEENQKISLSAKELNSSPVQEYAKIHKVGDIVKGTIRDIKDFGVFVELS 480
Query: 286 -GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335
++ L+H IS + + L+ GD ++ I+ D ++ R+ LS K L
Sbjct: 481 KNVDALIHKEDISTSMLEN----LKIGDDIEAAIVFIDEKKNRIRLSVKNL 527
Score = 41 (19.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKHVEEAGIVPGLKEEFVII 156
++G +K V + GA VD+ +L E K IK+ ++ I G + + +I
Sbjct: 286 DVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDY-INKGQEIDVEVI 344
Query: 157 GENEADDSLVLSLR 170
N + L +SLR
Sbjct: 345 EINPNERRLRVSLR 358
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 225 (84.3 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 73/266 (27%), Positives = 127/266 (47%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
E D G ++GTV C D+ VD KS + +E + + K E G K
Sbjct: 27 ELLDGGPREGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGEGKQDIEVGS----K 82
Query: 151 EEFVIIGENEADDSLVLSL-RMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXX 209
+ + S+VLS + ++ EL W++ Q +E+
Sbjct: 83 VKLYLEKTEGKSGSVVLSREKAVRDEL-WQKLEQAAAENLDIEGVIFGSIKCGFTVDVGG 141
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQ---- 259
+ F+P S + + + LLGK + +++D++Q +V+S + +++AD++
Sbjct: 142 VVAFLPASHVGLRQVKDITPLLGKKQKFRILKMDKKQGNVVVSRKAVLEESLADAKDSFL 201
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADIATVLQPGDT 313
+ L GS+V G V+S+ YG FI+I G ++GLLH++ IS RV+ + V G T
Sbjct: 202 STLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQT 261
Query: 314 LKVMILSHDRERGRVSLSTKKLEPTP 339
++ I+ DRE ++SL K+LE +P
Sbjct: 262 VRAKIIRIDRENRKISLGVKQLEESP 287
Score = 153 (58.9 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 37/132 (28%), Positives = 73/132 (55%)
Query: 214 VPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVI 269
+ +S++S S G+ + K + +D E ++ L ++ A+ + + +GS+
Sbjct: 244 ISWSRVSHPSAVFSC-GQTVRAKIIRIDRENRKISLGVKQLEESPWANVEERYPVGSIHK 302
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV-ADIATVLQPGDTLKVMILSHDRERGR 327
GTV S++ YG F+++ G+ GL+HVS++S R + + G+ ++V +LS D + R
Sbjct: 303 GTVTSIEDYGIFVELETGVEGLIHVSEVSWVRSHLPVNQLFMRGEEIEVKVLSIDATKNR 362
Query: 328 VSLSTKKLEPTP 339
+SLS K+ + P
Sbjct: 363 MSLSIKRCKENP 374
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 224 (83.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 73/255 (28%), Positives = 117/255 (45%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF-VIIGE 158
G V+G V + LVDI K +P +E ++I+ +A + G +EF V++ +
Sbjct: 292 GEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEEITWYRIERARDA-VKEG--DEFPVLVLK 348
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+ + ++LS + LA E+ + Q ++ +R F+P S
Sbjct: 349 EDEEGKIILSRKKALEILAEEKLLEWQ-KNKVPVTGKIVEVVKGGVLVDIGVRAFLPASL 407
Query: 219 ISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
I+ E L G+++ +EVD + R+VL + + + + A L GS V
Sbjct: 408 IALNYVEDLEALKGEEITAYVIEVDLAKRRVVLDRKSYLKEQEIKTKKEKIATLKEGSKV 467
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRV 328
G V + P+GAF+D+GG GLL IS R LQ G L+V++L DR +V
Sbjct: 468 KGKVTKIMPFGAFVDLGGFEGLLRAQDISWQRNVRPEEHLQVGQELEVVVLEVDRHNLKV 527
Query: 329 SLSTKKLEPTPGDMI 343
SL K+L P P I
Sbjct: 528 SLGLKQLTPDPWQKI 542
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 212 (79.7 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 50/144 (34%), Positives = 79/144 (54%)
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+R F P+SQIS + A E +G+ L K VE E +VLS+R + + + Q
Sbjct: 139 VRAFCPYSQISLRRAANPAEFVGRQLLFKVVEFAERGRNIVLSHRAILEEEERQKREALK 198
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMIL 319
L G+ + GTV L P+GAF+DIGG+ GL+ +S+ RV +I VL G+ + ++
Sbjct: 199 DTLKEGTTLTGTVTRLMPFGAFVDIGGVEGLIPISEAGWSRVKEIGDVLSVGEQVTALVK 258
Query: 320 SHDRERGRVSLSTKKLEPTPGDMI 343
D E ++SLS + ++ P + I
Sbjct: 259 RIDWENNKISLSLRDVQADPWEGI 282
Score = 151 (58.2 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 61/245 (24%), Positives = 105/245 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V+G V G + + A+ P + + + + E G + F ++
Sbjct: 116 GIPVEGNVEKEIKGGFEIKVGGTVRAFCPYSQISLRRAANPAE---FVGRQLLFKVVEFA 172
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDXXXXXXXXXXXXXXXXXXXXXLRGFVPF 216
E ++VLS R I E ++ L+ E + G +P
Sbjct: 173 ERGRNIVLSHRAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDIGGVEGLIPI 232
Query: 217 SQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVV 268
S+ E ++L G+ + +D E +++ LS R AD + GS
Sbjct: 233 SEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIAERFPEGSYH 292
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQI-SHDRVADIATVLQPGDTLKVMILSHDRERG 326
GTV L P+GAF+ + GI+GL+H+S++ + R+A VL+ GD ++V + DRE
Sbjct: 293 TGTVARLAPFGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDAVEVTVEGVDRESR 352
Query: 327 RVSLS 331
R+SL+
Sbjct: 353 RLSLA 357
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 213 (80.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 70/269 (26%), Positives = 121/269 (44%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F +L + D G VK TV +V+ KS +P E ++ E
Sbjct: 7 ELFEKSLTETDLRP--GALVKATVVEVRPDRVIVNAGLKSEGIIPASE-----FRNEE-- 57
Query: 144 GIVPGLKEEFVIIGENEADDSLV---LSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
P + +EF ++ E +D+ LS + AW +
Sbjct: 58 ---PHVGDEFFVVIE-ASDNGFGETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERVK 113
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAM--- 255
+R F+P S + K + L K++ K +++D+ ++ +V+S R M
Sbjct: 114 GGFTVDLNSVRAFLPGSLVDVKPVRDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAE 173
Query: 256 --ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
A+ QA +L G + G ++++ YGAF+D+GG++GLLH++ ++ RV + +L
Sbjct: 174 TSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNV 233
Query: 311 GDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GD + V +L DR++ RVSL K+L P
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDP 262
Score = 167 (63.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 71/314 (22%), Positives = 141/314 (44%)
Query: 39 KNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSE 98
K++ I+ A N E +E + E + + + S LEK +
Sbjct: 43 KSEGIIPASEFRNEEPHVGDEFFVVIEASDNGFGETRLSREKARRAKAWSELEKA---YK 99
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G VKG + G VD+ + A+LP + +K V + G + + +F II
Sbjct: 100 AGEMVKGVIIERVKGGFTVDLNSVR-AFLP---GSLVDVKPVRDPGYLEDKEIDFKIIKM 155
Query: 159 NEADDSLVLSLRMI-QYELAWERCRQLQS--EDXXXXXXXXXXXXXXXXXXXXXLRGFVP 215
++ +++V+S R + + E + ER +L+ E + G +
Sbjct: 156 DQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLH 215
Query: 216 FSQIS---SKSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSV 267
+ ++ K ++ L +G ++ +K ++ D ++ R+ L ++ D A++ + S
Sbjct: 216 ITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSR 275
Query: 268 VIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRER 325
V G V ++ YG F+ + G+ GL+H S++ ++ + V+Q G+ ++VM+L D ER
Sbjct: 276 VFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEER 335
Query: 326 GRVSLSTKKLEPTP 339
R+SL K+ + P
Sbjct: 336 RRISLGIKQCKRNP 349
Score = 135 (52.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 36/116 (31%), Positives = 63/116 (54%)
Query: 230 GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI- 284
G+++ + +E+DEE+ R+ L ++ + + + G V+S+ +G FI +
Sbjct: 321 GEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRSITDFGMFIGLE 380
Query: 285 GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G I+GL+H+S IS + A + GD ++ +IL D ER R+SL K+LE P
Sbjct: 381 GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDP 436
Score = 49 (22.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 35 LNSRKNKTIVSAVAISNAETR-EREELNQLFEEAYE 69
++ R+N +VS A+ AET ER+ + +E E
Sbjct: 155 MDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQE 190
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 157 (60.3 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
+G VV G + ++ YGAF+ + GL+H+S+I+H V DI L+ G +KV IL D
Sbjct: 6 VGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDID 65
Query: 323 RERGRVSLSTKKLEPTPGDMIRNPKLVFEKA-EEMAQTFRQRIAQAEAMARAD 374
E+ ++SLS + E P + K V +E T R ++ E + +AD
Sbjct: 66 EEKNKISLSIRATEEAPKEQPTKKKQVSSSENDEGFNTLRDKLE--EWIKKAD 116
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 161 (61.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 46/162 (28%), Positives = 79/162 (48%)
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
+L +G ++ G ++ ++P+G FIDI G+ GL H+SQ+S DR+ ++ + G++++ I
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI 1490
Query: 319 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF 378
L D E+ R+SL K GD + L + ++E +A D F
Sbjct: 1491 LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF 1548
Query: 379 QPESGLT------LNSDGILGPLSPDLPADGLDLTDISPADD 414
Q SG T + S + PL DL D ++ TD + +
Sbjct: 1549 QETSGGTSLVLAQVESRASIPPLEVDL--DDIEETDFDSSQN 1588
Score = 72 (30.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 38/173 (21%), Positives = 75/173 (43%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV-----PGLKEE 152
+LG+ V G + ++ +V + KS + + + H H E+A ++ PG + +
Sbjct: 633 KLGSIVSGIIDTITSQAVIVRV--KSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELD 690
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWER---CRQLQSEDXXXXXXXXXXXXXXXXXXXXX 209
+++ + E ++ + LS + +LA E QLQ
Sbjct: 691 KLLVLDIEGNN-MALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 749
Query: 210 LRGFVPFSQI--SSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
L GF P S+ K+ E +G+ + V+V++E+SR+ LS +++ S
Sbjct: 750 LTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCAS 802
Score = 48 (22.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSA--YLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
+G+ +KGT+ ++ G +V+ ++ ++P H H+ A +VPG V++
Sbjct: 839 IGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQ-----H---HMGGATLVPGSVVNAVVL 890
Query: 157 GENEADDSLVLSLR 170
+ A+ + LSLR
Sbjct: 891 DISRAERLVDLSLR 904
Score = 46 (21.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 76 MEGVSF-TLEEFHSALEKYDF-NSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLP 128
MEG++ TL+E SA E F +S++ G K V D GA+V + A P
Sbjct: 449 MEGLAVGTLKE--SAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCP 503
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 175 (66.7 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 66/275 (24%), Positives = 122/275 (44%)
Query: 84 EEFHSALEKYDFNSEL---GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F + LE+ F+ L G V+G + LV++ KS +P Q+ H + +
Sbjct: 28 EDFTTILEER-FSDSLIREGDMVEGVIKSISPHFVLVNLGLKSEGKIPVQQ--FHDLGTL 84
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + E+ G S +L+ + +E L D
Sbjct: 85 EVGSKIIVYVEK-TETGSGNLVLSYTKALKQKVWNRLYEM--YLNGSDEDVMGVILYTIK 141
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAM--- 255
L F+P S + + ++ L+G L + +++D + ++ +S RKA+
Sbjct: 142 SGCIVEVEGLNAFLPNSHLDVRPVSDPATLVGVKLKFRILKMDPKTGKIFVSRRKALGAV 201
Query: 256 ---ADSQ--AQLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADI 304
A S+ + + G ++ G V+S+ YG F+ I G ++GLL+V+ IS RV
Sbjct: 202 HEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHP 261
Query: 305 ATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+++ G ++V +++ D E+GR+SL K+L P
Sbjct: 262 SSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENP 296
Score = 127 (49.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI 284
+G+++ +K + VD E+ R+ L ++ D + G+V G V S++ YG F+ +
Sbjct: 267 VGQEVRVKVIAVDPEKGRISLGVKQLTENPWKDVSKKYTPGNVYPGVVTSVEDYGIFVRL 326
Query: 285 G-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G+ GL+H +IS R + P + VM+LS D E +++LS K+ P
Sbjct: 327 EEGVEGLVHSGEISWTREKPL---FLPNSKVNVMLLSVDEEGHKIALSVKQCSDNP 379
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 146 VPGLKEE-FVIIGENEADDSLVLSLRMIQ 173
VP EE F I E DSL+ M++
Sbjct: 22 VPDYNEEDFTTILEERFSDSLIREGDMVE 50
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 145 (56.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVMIL 319
Q G VV G V ++ YGAF+ + GL+H+S+I++ V DI L+ GDT++V +L
Sbjct: 4 QYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVL 63
Query: 320 SHDRERGRVSLSTKKLEPTPGD-MIRNP 346
S D E ++SLS K + G +I NP
Sbjct: 64 SIDEEHRKMSLSLKAAKRKQGRILIPNP 91
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 167 (63.8 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 41/111 (36%), Positives = 60/111 (54%)
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGIN 288
+ +D +V N+ M +Q Q L +G V GTV S+K YGAF++ GG
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702
Query: 289 GLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GLLH+S++SH+ V+ ++ VL G + M + D RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 40/130 (30%), Positives = 72/130 (55%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ + D +K EQ+ ++ KA+ A++ +G++ G
Sbjct: 571 KGGATIRQLTEETGTTIEIEDDGTVKIAATSGEQAEDAINRIKALT---AEIEVGTLYTG 627
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V + +GAF+++ G +GL+H+SQIS +RV +++ VL G +KV +L DR+ GRV
Sbjct: 628 KVVRIVDFGAFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKVKVLEVDRQ-GRVR 686
Query: 330 LSTKKLEPTP 339
LS K+ P
Sbjct: 687 LSIKEAMEKP 696
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 156 (60.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 40/125 (32%), Positives = 69/125 (55%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ +G D +K D E + +S + + A+L +G++ G
Sbjct: 573 KGGATIRQLTEETGTTIEIGDDGTIKIAATDGESAANAISRIEQLT---AELEVGTIYEG 629
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V + +GAF++I G +GL+H+SQIS +RV ++ L G +KV +L DR+ GRV
Sbjct: 630 KVVRIVDFGAFVNILPGKDGLVHISQISTERVNNVTDHLSEGQEVKVKVLEVDRQ-GRVR 688
Query: 330 LSTKK 334
LS K+
Sbjct: 689 LSIKE 693
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
+GS + G V + +GAF+++ G+ GL+H+S+++ + V DI L+ GD ++V +++ +
Sbjct: 5 VGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVE 64
Query: 323 RERGRVSLSTKKL---EPTPGDMIR 344
++ G++ LS KK E T GD R
Sbjct: 65 KD-GKIGLSIKKAKEREKTEGDRPR 88
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
+GS + G V + +GAF+++ G+ GL+H+S+++ + V DI L+ GD ++V +++ +
Sbjct: 5 VGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVE 64
Query: 323 RERGRVSLSTKKL---EPTPGDMIR 344
++ G++ LS KK E T GD R
Sbjct: 65 KD-GKIGLSIKKAKEREKTEGDRPR 88
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 122 (48.0 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD--TLKVMILS 320
+G+ + G V + +GAF+++ GG GL+H+S+++ + V DI +L GD T+KVM +
Sbjct: 5 VGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIG 64
Query: 321 HDRERGRVSLSTKKLEPTP 339
D G++ LS +K P
Sbjct: 65 DD---GKIGLSIRKAVDRP 80
>TAIR|locus:2119946 [details] [associations]
symbol:emb2726 "embryo defective 2726" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
Genevestigator:Q9SZD6 Uniprot:Q9SZD6
Length = 953
Score = 145 (56.1 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 265 GSVVIGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G+ G V++++P+GAF+D G +GL+HVSQ+S + V D+++V+ G +KV ++ D
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195
Query: 324 ERGRVSLSTKKLEPTP 339
E R+SL+ ++ + P
Sbjct: 196 ESKRISLTMRENDDPP 211
Score = 49 (22.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 343 IRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPES 382
+ NP++ + E++ + +Q+ + E M R D+L +PE+
Sbjct: 855 VANPQVQYVSIEDIPEEIKQKEKEIE-MQREDLLS-KPEN 892
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGIN----GLLHVSQISHDRVADIATVLQPGDTLKVMIL 319
IG + G V S++ +GAFI + G GL+H+SQI ++RV +A VL+ G+ +KV +
Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV- 291
Query: 320 SHDRERGRVSLSTKKLEPTPGDMIRNPK 347
+ E G++SLS K+++ G+ + NP+
Sbjct: 292 -NKIENGKISLSMKEVDQNSGEDL-NPR 317
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGIN----GLLHVSQISHDRVADIATVLQPGDTLKVMIL 319
IG + G V S++ +GAFI + G GL+H+SQI ++RV +A VL+ G+ +KV +
Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV- 291
Query: 320 SHDRERGRVSLSTKKLEPTPGDMIRNPK 347
+ E G++SLS K+++ G+ + NP+
Sbjct: 292 -NKIENGKISLSMKEVDQNSGEDL-NPR 317
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/78 (39%), Positives = 52/78 (66%)
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G ++ G V ++ +GAF+DIG +GL+H+S +S+ V D TV++ GD +KV +L D
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDL 710
Query: 324 ERGRVSLSTKKLEPTPGD 341
+R R++L T +L+ PG+
Sbjct: 711 QRKRIAL-TMRLDEQPGE 727
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 142 (55.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 35/104 (33%), Positives = 58/104 (55%)
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGG-INGL 290
D +K D E+++ + + + + A++ +G V G V + +GAF+ IGG GL
Sbjct: 592 DGTVKIAATDGEKAKHAI---RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648
Query: 291 LHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKK 334
+H+SQI+ RV + LQ G + V +L DR+ GR+ LS K+
Sbjct: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691
Score = 45 (20.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 12 RCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYER 70
R ++ RLS IT Q++ K+ A ++ ET + EL ++ A E+
Sbjct: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH-AIEK 302
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 145 (56.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 35/127 (27%), Positives = 67/127 (52%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G V +I+ + + D +K E+ ++ + + A++ +G V G
Sbjct: 574 KGGVVIREITEATNCAIDISDDGTIKIAAHTTEEGEAA---KRRIEELTAEVELGKVYEG 630
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
TV + +GAF+ I GL+H+SQI+ +RV ++ L+ G ++V ++ DR+ GRV
Sbjct: 631 TVVKITDFGAFVQILPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVR 689
Query: 330 LSTKKLE 336
LS K+++
Sbjct: 690 LSMKQID 696
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 25 KSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
K QIQ+K + + I + A RE EE
Sbjct: 254 KKAYQIQEKTARQAQIQAIRDQLLADRAAEREGEE 288
>TIGR_CMR|ECH_0726 [details] [associations]
symbol:ECH_0726 "polyribonucleotide
nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
KEGG:ech:ECH_0726 PATRIC:20576896
BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
Length = 796
Score = 140 (54.3 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/81 (33%), Positives = 51/81 (62%)
Query: 264 IGSVVIGTVQSLKPYGAFID-IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
IG V GTV + +GAF+ +GG GL+H+S+I ++ ++ + +V+ D +KV+++ D
Sbjct: 625 IGKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIRNEHISSVGSVISLNDKVKVLVIGID 684
Query: 323 RERGRVSLSTKKLEPTPGDMI 343
RE + LS ++++ G+ I
Sbjct: 685 REH--IQLSMRRVDQESGEPI 703
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 139 (54.0 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
+ L +G V+ G V ++ +GAF+DIG +GL+H+S ++ ++D V++ GD +KV +
Sbjct: 646 SDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKV 705
Query: 319 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARA 373
+ D +R R++LS + L PG R+ + ++ + + R+ Q A+ A
Sbjct: 706 MEVDVQRKRIALSMR-LNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGA 759
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 139 (54.0 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
+ L +G V+ G V ++ +GAF+DIG +GL+H+S ++ ++D V++ GD +KV +
Sbjct: 646 SDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKV 705
Query: 319 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARA 373
+ D +R R++LS + L PG R+ + ++ + + R+ Q A+ A
Sbjct: 706 MEVDVQRKRIALSMR-LNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGA 759
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 140 (54.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ + D +K D +Q++ + + + + A++ +G + G
Sbjct: 572 KGGAVIRQLTEETGTTIEIEDDGTIKIAATDGDQAKEAI---RRIQEITAEVEVGVIYTG 628
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF+ I G +GL+H+SQI+ RV ++ L G ++V +L DR+ GRV
Sbjct: 629 KVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQ-GRVR 687
Query: 330 LSTKKLEPT 338
LS K+ T
Sbjct: 688 LSMKEAVET 696
Score = 40 (19.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 16 ISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEE 66
++ TRL IT+ + + V+A ++ E + +E++ +F +
Sbjct: 250 LAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 140 (54.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ + D +K D +Q++ + + + + A++ +G + G
Sbjct: 572 KGGAVIRQLTEETGTTIEIEDDGTIKIAATDGDQAKEAI---RRIQEITAEVEVGVIYTG 628
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF+ I G +GL+H+SQI+ RV ++ L G ++V +L DR+ GRV
Sbjct: 629 KVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQ-GRVR 687
Query: 330 LSTKKLEPT 338
LS K+ T
Sbjct: 688 LSMKEAVET 696
Score = 40 (19.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 16 ISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEE 66
++ TRL IT+ + + V+A ++ E + +E++ +F +
Sbjct: 250 LAETRLVEAYQITEKMARYDRIHEISAEVTAALLAENEALDTKEIHTIFHD 300
>UNIPROTKB|Q2GJV5 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 137 (53.3 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 264 IGSVVIGTVQSLKPYGAFID-IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
+G + G V L YGAF+ +G GL+H+S+I ++ + +A VL GD +KV+++ D
Sbjct: 629 VGKIYSGEVCELAKYGAFVTFLGARKGLVHISEIRNEHINAVADVLAVGDKVKVLVIDMD 688
Query: 323 RERGRVSLSTKKLEPTPGDMI 343
++ + LS ++++ GD +
Sbjct: 689 KDH--IQLSMRRIDQETGDQV 707
>TIGR_CMR|APH_0767 [details] [associations]
symbol:APH_0767 "polyribonucleotide
nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 137 (53.3 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 264 IGSVVIGTVQSLKPYGAFID-IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD 322
+G + G V L YGAF+ +G GL+H+S+I ++ + +A VL GD +KV+++ D
Sbjct: 629 VGKIYSGEVCELAKYGAFVTFLGARKGLVHISEIRNEHINAVADVLAVGDKVKVLVIDMD 688
Query: 323 RERGRVSLSTKKLEPTPGDMI 343
++ + LS ++++ GD +
Sbjct: 689 KDH--IQLSMRRIDQETGDQV 707
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 136 (52.9 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 253 KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPG 311
K + D A+ G + +GTV+ + +GAF++I G +GL+H+S++ +RV ++ VL G
Sbjct: 608 KMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNEG 667
Query: 312 DTLKVMILSHDRERGRVSLSTKK 334
D + V + D++ G++ LS K+
Sbjct: 668 DKVLVKCIGIDKQ-GKIKLSRKE 689
>TIGR_CMR|CHY_1758 [details] [associations]
symbol:CHY_1758 "polyribonucleotide
nucleotidyltransferase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
Length = 731
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-----G--GINGLLH 292
VD+E L+ + + ++ +G V +G V + +GAF+++ G G GL+H
Sbjct: 611 VDKEAGEKALN---IIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVH 667
Query: 293 VSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPK 347
+SQ++H RV + V++ GD + V + +D + GR+ LS K + P + +R K
Sbjct: 668 ISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQ-GRLKLSRK--DAIPAEEVREKK 719
>UNIPROTKB|Q74GL1 [details] [associations]
symbol:tex "S1 RNA-binding domain-containing
transcriptional accessory protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
Length = 761
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 37/105 (35%), Positives = 58/105 (55%)
Query: 254 AMADSQAQLGI---GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
A D ++G G V+ G V ++ +GAF+D+G +GL+HVS +S V D A ++
Sbjct: 636 AFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVR 695
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAE 354
G ++V +LS D +R R+SLS + E PG R+ + K E
Sbjct: 696 VGQVVQVKVLSVDVQRKRISLSIR--EAAPGGAPRSTEKPARKEE 738
>TIGR_CMR|GSU_0235 [details] [associations]
symbol:GSU_0235 "S1 RNA binding domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
Uniprot:Q74GL1
Length = 761
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 37/105 (35%), Positives = 58/105 (55%)
Query: 254 AMADSQAQLGI---GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
A D ++G G V+ G V ++ +GAF+D+G +GL+HVS +S V D A ++
Sbjct: 636 AFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVR 695
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAE 354
G ++V +LS D +R R+SLS + E PG R+ + K E
Sbjct: 696 VGQVVQVKVLSVDVQRKRISLSIR--EAAPGGAPRSTEKPARKEE 738
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 138 (53.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/85 (31%), Positives = 56/85 (65%)
Query: 252 RKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQP 310
+K + D ++ +G + G V+ ++ +GAF+++ G +GL+H+S+++ +RV + V++
Sbjct: 610 KKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKI 669
Query: 311 GDTLKVMILSHDRERGRVSLSTKKL 335
GD + V ++ D++ GRV+LS K L
Sbjct: 670 GDVITVKVIEIDKQ-GRVNLSRKVL 693
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL 184
+H+ KH E I K EAD + + I Y++ E R+L
Sbjct: 260 VHE-KHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYKIVKEEVRRL 309
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 137 (53.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 27/83 (32%), Positives = 55/83 (66%)
Query: 252 RKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQP 310
+K + D ++ +G + +G V+ ++ +GAF++I G +GL+H+S+++ +RV + V++
Sbjct: 610 KKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKI 669
Query: 311 GDTLKVMILSHDRERGRVSLSTK 333
GD + V + D++ GRV+LS K
Sbjct: 670 GDEILVKVTEIDKQ-GRVNLSRK 691
Score = 39 (18.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEA-DDSLVLSLRMIQYELAWERCRQLQSED 188
+H+ KH E I +K V E+E D+ + ++ I +L R+L +E+
Sbjct: 260 VHE-KHAREDAINE-VKNAVVAKFEDEEHDEDTIKQVKQILSKLVKNEVRRLITEE 313
>UNIPROTKB|Q88AQ9 [details] [associations]
symbol:PSPTO_0327 "S1 RNA binding domain protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
Length = 773
Score = 131 (51.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G ++ G V ++ +GAF+DIG +GL+H+S +S + D ++ GD +KV ++ D
Sbjct: 649 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEIDI 708
Query: 324 ERGRVSLSTKKLEPTPGDMI 343
R RV LS + + TPG+ I
Sbjct: 709 PRKRVGLSMR-MSDTPGEKI 727
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V G V + +GAF++ G +GL+HVSQI + R+ + VL+ G +KV +L D
Sbjct: 625 GQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSDVLKEGQEVKVKLLGFD- 683
Query: 324 ERGRVSLSTKKLEPTPGDMIRNPKLVFEKAE 354
+RG+V LS K ++ G+ I K +AE
Sbjct: 684 DRGKVRLSMKVVDQETGEEIVPEKKEASEAE 714
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 139 (54.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 33/104 (31%), Positives = 58/104 (55%)
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGI-------GSVVIGTVQSLKPYGAFIDIGG---ING 289
VD E +L +S + ++ D + I G +V G V+ ++ +GAFI I G ++G
Sbjct: 1284 VDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSG 1343
Query: 290 LLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
L H ++++ RV D T+ + GD +K +L DR++G++S K
Sbjct: 1344 LCHRTEMADTRVEDARTLYEEGDAVKAKVLKVDRDQGKISFGLK 1387
Score = 43 (20.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 82 TLEEFHS--ALEKYDFNSEL--GTKVKGTVFCT 110
T++ HS A K D + G K+KG + CT
Sbjct: 385 TVDLVHSGGATGKTDLTKKYHNGAKIKGRISCT 417
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 27 ITQIQQKLLNSRKNKTIVSAVAISN 51
+T++ K + + N T+V AV + N
Sbjct: 1140 VTRVTDKQVIMQLNNTLVGAVDLIN 1164
>UNIPROTKB|Q0BWM9 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
Length = 713
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
A+ +G + G V S+K +G F++ G +GL+HVSQ+++ R+ +++ GD + V +
Sbjct: 619 AEAEVGEIYEGKVVSMKDFGIFVNFFGPKDGLVHVSQMANKRIGHPKEMVKEGDKVWVKL 678
Query: 319 LSHDRERGRVSLSTKKLEPTPG 340
+ D ERG+V LS K ++ G
Sbjct: 679 MGFD-ERGKVRLSMKVVDQETG 699
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 128 (50.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 54/193 (27%), Positives = 91/193 (47%)
Query: 228 LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGG- 286
++G D K +E+ +QS++ S+ + + A + +GS + GTV + YG I I G
Sbjct: 1201 IVGIDNDSKRIEMSLKQSKIKDSSE--ITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGT 1258
Query: 287 --INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE-PTPGDMI 343
I GL H S+I+ V +I+ + GD ++ +L D E+ R++L K + D+
Sbjct: 1259 DNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDIS 1318
Query: 344 RNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLS-PD-LPA 401
+ E+ EM + +++E ++ D+ Q E L S G P L A
Sbjct: 1319 MSDN---EEDVEMRSEDQSDTSESEVGSKDDV---QSEEVENLESAGDEDEEEEPSALQA 1372
Query: 402 DGLDLTDISPADD 414
+G D TD S D
Sbjct: 1373 NGFDWTDGSTVFD 1385
Score = 51 (23.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 93 YDFNSEL-GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
YD+ GT+ GT+ GA+V+ A+LP E I+ E
Sbjct: 571 YDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDARE 621
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 27 ITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQL 63
IT I KL + R + + A NA T E + LNQ+
Sbjct: 138 ITNISDKL-SDRLDS--IDNHAEDNAATEEEDGLNQI 171
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 63/258 (24%), Positives = 114/258 (44%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
EKY +LG KV G F TD AL D + L +EA KI +V +P
Sbjct: 1100 EKYVL-LDLGNKVTGISFITD---ALNDFS------LTLKEAFEDKINNV-----IPT-- 1142
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQ-LQSEDXXXXXXXXXXXXXXXXXXXXX 209
++ +E + + LSLR + + + L+ +
Sbjct: 1143 ---TVLSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRK 1199
Query: 210 LRGFVPFSQISSKSTAE-ELLGKDLPL---KFVEVDEEQSRLVLSNRKA-------MADS 258
+ FVP S++S E + K + K V DE+ SR+ L+ R++ + +
Sbjct: 1200 VEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDED-SRISLTLRESEINGDLKVLKT 1258
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGG---INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ + G V GT++S+ +G F+ + + GL H+++I+ + D++ + GD +K
Sbjct: 1259 YSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVK 1318
Query: 316 VMILSHDRERGRVSLSTK 333
++L + E+ ++SLS K
Sbjct: 1319 AIVLKTNPEKKQISLSLK 1336
>CGD|CAL0004768 [details] [associations]
symbol:PRP22 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071021
"U2-type post-spliceosomal complex" evidence=IEA] [GO:0000350
"generation of catalytic spliceosome for second transesterification
step" evidence=IEA] [GO:0000390 "spliceosomal complex disassembly"
evidence=IEA] [GO:0000386 "second spliceosomal transesterification
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
CGD:CAL0004768 GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 EMBL:AACQ01000012 InterPro:IPR022967 SMART:SM00316
KO:K12818 EMBL:AACQ01000011 RefSeq:XP_721941.1 RefSeq:XP_722102.1
ProteinModelPortal:Q5AJY8 STRING:Q5AJY8 GeneID:3636272
GeneID:3636404 KEGG:cal:CaO19.11516 KEGG:cal:CaO19.4033
Uniprot:Q5AJY8
Length = 996
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD--RVADIATVLQPGDTLKVMILSH 321
+G + G VQS+ YGAFI I G +GL H+SQ+S D RV + VL P + V ++
Sbjct: 75 VGKIYSGVVQSVTNYGAFIKIEGTSGLCHISQMSFDGSRV-ESTNVLAPNQKVFVKVIDI 133
Query: 322 DRERGRVSLSTKKLEPTPG 340
R+SLS + + G
Sbjct: 134 QTHANRISLSMRGINQNTG 152
>UNIPROTKB|Q5LKS3 [details] [associations]
symbol:Q5LKS3 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000032 GenomeReviews:CP000032_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_165135.1 ProteinModelPortal:Q5LKS3 SMR:Q5LKS3
GeneID:3196926 KEGG:sil:SPOA0306 PATRIC:23381958
ProtClustDB:CLSK2308454 Uniprot:Q5LKS3
Length = 765
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ GTV ++ +GAF+DIG +GL+HVSQ++ V D V++ G +KV + D
Sbjct: 645 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVTVTEIDV 704
Query: 324 ERGRVSLSTKK 334
R R+ LS +K
Sbjct: 705 PRKRIGLSMRK 715
>TIGR_CMR|SPO_A0306 [details] [associations]
symbol:SPO_A0306 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000032
GenomeReviews:CP000032_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_165135.1
ProteinModelPortal:Q5LKS3 SMR:Q5LKS3 GeneID:3196926
KEGG:sil:SPOA0306 PATRIC:23381958 ProtClustDB:CLSK2308454
Uniprot:Q5LKS3
Length = 765
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ GTV ++ +GAF+DIG +GL+HVSQ++ V D V++ G +KV + D
Sbjct: 645 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVTVTEIDV 704
Query: 324 ERGRVSLSTKK 334
R R+ LS +K
Sbjct: 705 PRKRIGLSMRK 715
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 126 (49.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
++ A L G ++ G V ++ +GAF+DIG +GL+H+S I+ ++D +++ G+ +K
Sbjct: 650 NTMADLTPGMILEGVVSNVANFGAFVDIGVHQDGLVHISSITEKFISDPREIVKAGEVVK 709
Query: 316 VMILSHDRERGRVSLSTKKLE 336
V ++ D R R+SL T +LE
Sbjct: 710 VKVVEVDIARKRISL-TMRLE 729
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 20 RLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEA 67
+++ IT + KL N+ + AVA N ET ++ + E A
Sbjct: 114 KIANEAGITPLANKLFNNWQLSPTTEAVAFIN-ETAGFSDVKAVLEGA 160
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+L +++ + DN+ L D+ YLP + K K EAGI P
Sbjct: 80 KLSAELEKLIKQADNKTRLEDL------YLPYKPKRRTKGKIANEAGITP 123
>UNIPROTKB|H9KZI9 [details] [associations]
symbol:LOC100858239 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00575 PROSITE:PS00690
PROSITE:PS50126 GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00700000104241 EMBL:AADN02006936
Ensembl:ENSGALT00000013764 OMA:CRERERG Uniprot:H9KZI9
Length = 692
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 41/148 (27%), Positives = 74/148 (50%)
Query: 216 FSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275
+S+ S+S + + +D K++E E+ R ++ + IG + G V S+
Sbjct: 133 YSRSRSRSPSRDRRDRD---KYLERSNERWR----DKHVDRPPPEEPSIGDIYNGKVTSI 185
Query: 276 KPYGAFIDIGGIN----GLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDRERGRVSL 330
+G F+ + G+ GL+H+S++ + RVA++A V+ G +KV +LS + SL
Sbjct: 186 MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSK--TSL 243
Query: 331 STKKLEPTPGDMI---RNPKLVFEKAEE 355
S K ++ G+ + R LV E EE
Sbjct: 244 SMKDVDQDTGEDLNPNRRRNLVGETNEE 271
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 123 (48.4 bits), Expect = 0.00026, P = 0.00026
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 253 KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPG 311
K + D + GSV G V + +GAF++I G G++H+S+++ RV + V++ G
Sbjct: 608 KIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKVEDVVKVG 667
Query: 312 DTLKVMILSHDRERGRVSLSTKK-LEPTPGDMIRN 345
D + V + D + GR++LS + L P + RN
Sbjct: 668 DEITVKVTEIDSQ-GRINLSRRVILNPNAVPISRN 701
>UNIPROTKB|Q8E8N3 [details] [associations]
symbol:tex "Transcriptional accessory protein Tex"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 267 VVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER 325
++ G V ++ +GAF+DIG +GL+H+S ++ + D TV++ GD +KV ++ D ER
Sbjct: 654 ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEVDVER 713
Query: 326 GRVSLSTK 333
R+ LS +
Sbjct: 714 RRIGLSMR 721
>TIGR_CMR|SO_4629 [details] [associations]
symbol:SO_4629 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 267 VVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER 325
++ G V ++ +GAF+DIG +GL+H+S ++ + D TV++ GD +KV ++ D ER
Sbjct: 654 ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEVDVER 713
Query: 326 GRVSLSTK 333
R+ LS +
Sbjct: 714 RRIGLSMR 721
>UNIPROTKB|F1P306 [details] [associations]
symbol:LOC100858239 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
GO:GO:0005524 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00700000104241 EMBL:AADN02070153
EMBL:AADN02070154 IPI:IPI00591627 Ensembl:ENSGALT00000001801
OMA:AMANTAM Uniprot:F1P306
Length = 1168
Score = 123 (48.4 bits), Expect = 0.00046, P = 0.00046
Identities = 41/148 (27%), Positives = 74/148 (50%)
Query: 216 FSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275
+S+ S+S + + +D K++E E+ R ++ + IG + G V S+
Sbjct: 203 YSRSRSRSPSRDRRDRD---KYLERSNERWR----DKHVDRPPPEEPSIGDIYNGKVTSI 255
Query: 276 KPYGAFIDIGGIN----GLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDRERGRVSL 330
+G F+ + G+ GL+H+S++ + RVA++A V+ G +KV +LS + SL
Sbjct: 256 MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGSK--TSL 313
Query: 331 STKKLEPTPGDMI---RNPKLVFEKAEE 355
S K ++ G+ + R LV E EE
Sbjct: 314 SMKDVDQDTGEDLNPNRRRNLVGETNEE 341
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 126 (49.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
+++ +G + G V + +GAF++I G +GL+H+SQIS +RVA+++ L+ + V +
Sbjct: 616 SEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSDHLELNQEVTVKV 675
Query: 319 LSHDRERGRVSLSTKKLE 336
+ DR+ GRV LS K+ +
Sbjct: 676 MEVDRQ-GRVRLSIKEAQ 692
Score = 37 (18.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 131 EACIHKIKHVEEAGIV 146
EA + +IK + EAG +
Sbjct: 239 EALVAQIKELAEAGFI 254
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 117 (46.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 50/215 (23%), Positives = 91/215 (42%)
Query: 210 LRGFVPFSQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD------- 257
+R F+P +S LL D+ + + + E + R++L + A+
Sbjct: 658 IRAFLPTPHLSDHVANSPLLYHWLQAGDVLHRVLCLSETEGRVLLCRKPALVSAVEGGQD 717
Query: 258 --SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
S +++ G ++IG V+S+K YG FI G++GL + +S V + G T+
Sbjct: 718 PKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 777
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 374
+ + D E+ R+ LS + + T GD L+ + E Q R ++ +++
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSDCTLGDQATTSLLLLSQCLEEQQGVRSLMSNRDSVLIQT 837
Query: 375 MLRFQPESGLTLNSDGIL---GPLSPDLPADGLDL 406
+ P L L +L L + P GL L
Sbjct: 838 LAEMTPGMVLDLEVQEVLEDGSVLFSEGPVPGLVL 872
Score = 56 (24.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSS-AYLPTQEA 132
G + GTV ++ G LVDI + A+LP Q+A
Sbjct: 187 GMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKA 220
>TAIR|locus:2063093 [details] [associations]
symbol:AT2G40290 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0005850
"eukaryotic translation initiation factor 2 complex" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009165
"nucleotide biosynthetic process" evidence=RCA] InterPro:IPR003029
InterPro:IPR011488 Pfam:PF00575 Pfam:PF07541 PROSITE:PS50126
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GO:GO:0003743
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K03237
InterPro:IPR022967 SMART:SM00316 EMBL:AC007020 GO:GO:0005850
Gene3D:1.10.150.190 Gene3D:3.30.70.1130 InterPro:IPR024055
InterPro:IPR024054 SUPFAM:SSF110993 SUPFAM:SSF116742 HSSP:P05198
OMA:KDVNEHQ ProtClustDB:CLSN2686638 EMBL:AY080668 EMBL:AY117188
IPI:IPI00536718 PIR:F84827 RefSeq:NP_565927.1 UniGene:At.25426
ProteinModelPortal:Q9SIZ2 SMR:Q9SIZ2 STRING:Q9SIZ2 PRIDE:Q9SIZ2
EnsemblPlants:AT2G40290.1 GeneID:818621 KEGG:ath:AT2G40290
TAIR:At2g40290 InParanoid:Q9SIZ2 PhylomeDB:Q9SIZ2
ArrayExpress:Q9SIZ2 Genevestigator:Q9SIZ2 Uniprot:Q9SIZ2
Length = 344
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 34/158 (21%), Positives = 73/158 (46%)
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERG 326
+ + + + Y + ++ I G++ S++S R+ ++++++ G VM+L D+E+G
Sbjct: 26 IQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG 85
Query: 327 RVSLSTKKLEP----TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLR----- 377
+ LS +++ T + KLV +A+T + + R
Sbjct: 86 YIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLEDLYVNIGWPLYRRHGHA 145
Query: 378 FQPESGLTLNSDGILGPLSPDLPA---DGLDLTDISPA 412
F+ L + D +LGPL+ ++ DG ++T + PA
Sbjct: 146 FEAFKILVTDPDSVLGPLTREIKEVGPDGQEVTKVVPA 183
>FB|FBgn0086895 [details] [associations]
symbol:pea "peanuts" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 EMBL:AE013599
GO:GO:0005524 GO:GO:0022008 GO:GO:0007286 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0004004 GO:GO:0000381 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00700000104241 KO:K12818 OMA:NAWCYEN EMBL:BT044222
RefSeq:NP_610928.1 UniGene:Dm.12451 SMR:A1Z9L3 STRING:A1Z9L3
EnsemblMetazoa:FBtr0087518 GeneID:36561 KEGG:dme:Dmel_CG8241
UCSC:CG8241-RA CTD:36561 FlyBase:FBgn0086895 InParanoid:A1Z9L3
OrthoDB:EOG437PVS GenomeRNAi:36561 NextBio:799212 Uniprot:A1Z9L3
Length = 1242
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 265 GSVVIGTVQSLKPYGAFIDIGGIN----GLLHVSQI-SHDRVADIATVLQPGDTLKVMIL 319
G + G + ++ P+G F+ + G+ GL+H+SQ+ + RV D+ V+ T+KV ++
Sbjct: 285 GKIYSGKIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRNQTVKVKVM 344
Query: 320 SHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQ 379
S ++ VSLS K+++ G + NP A E ++ R R + ML Q
Sbjct: 345 SITGQK--VSLSMKEVDQDSGKDL-NP---LSHAPEDDESLRDRNPDGPFSSSTSMLNLQ 398
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 115 (45.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 52/215 (24%), Positives = 93/215 (43%)
Query: 212 GFVPFSQISSKSTAEELL------GKDLP-LKFVEVDEEQSRLVLSNRKAMAD------- 257
GF+P + +S T LL G L + + V EE R++L + A+
Sbjct: 660 GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEE--RVLLCRKPALVSAVEGGQN 717
Query: 258 --SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
S +++ G ++IG V+++K YG F+ G++GL + +S V + G T+
Sbjct: 718 PKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 374
+ + D E+ R+ LS + + T GD+ L+ + E Q R ++ +++
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQT 837
Query: 375 MLRFQPESGLTLNSDGIL---GPLSPDLPADGLDL 406
+ P L L +L L + P GL L
Sbjct: 838 LAEMTPGMALDLEVQEVLEDGSVLFSEGPVPGLVL 872
Score = 56 (24.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSS-AYLPTQEA 132
G + GTV ++ G LVDI + A+LP Q+A
Sbjct: 187 GMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKA 220
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 115 (45.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 52/215 (24%), Positives = 93/215 (43%)
Query: 212 GFVPFSQISSKSTAEELL------GKDLP-LKFVEVDEEQSRLVLSNRKAMAD------- 257
GF+P + +S T LL G L + + V EE R++L + A+
Sbjct: 660 GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEE--RVLLCRKPALVSAVEGGQN 717
Query: 258 --SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
S +++ G ++IG V+++K YG F+ G++GL + +S V + G T+
Sbjct: 718 PKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 374
+ + D E+ R+ LS + + T GD+ L+ + E Q R ++ +++
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQT 837
Query: 375 MLRFQPESGLTLNSDGIL---GPLSPDLPADGLDL 406
+ P L L +L L + P GL L
Sbjct: 838 LAEMTPGMALDLEVQEVLEDGSVLFSEGPVPGLVL 872
Score = 56 (24.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSS-AYLPTQEA 132
G + GTV ++ G LVDI + A+LP Q+A
Sbjct: 187 GMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKA 220
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 414 393 0.00095 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 588 (63 KB)
Total size of DFA: 209 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.44u 0.09s 32.53t Elapsed: 00:00:01
Total cpu time: 32.45u 0.09s 32.54t Elapsed: 00:00:01
Start: Tue May 21 04:17:40 2013 End: Tue May 21 04:17:41 2013