BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015066
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/413 (83%), Positives = 382/413 (92%), Gaps = 6/413 (1%)
Query: 1 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
MA+LAQQ G LRCPP+S++ LS+ S + L R + IVSAVA+SNA+TRER++
Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS----PKHTLKPRFSP-IVSAVAVSNAQTRERQK 55
Query: 60 LNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDI
Sbjct: 56 LKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDI 115
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
TAKSSAYLP EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWE
Sbjct: 116 TAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWE 175
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
RCRQLQ+EDVVVKGK+VGANKGGVVA VEGLRGFVPFSQISSKS+AEELL K++PLKFVE
Sbjct: 176 RCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVE 235
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 236 VDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 295
Query: 300 RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 359
RV+DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT
Sbjct: 296 RVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 355
Query: 360 FRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPA 412
FRQRIAQAEAMARADMLRFQPESGLTL+SDGILGPL+ DLPA+GLDL+ + PA
Sbjct: 356 FRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPA 408
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 211/294 (71%), Gaps = 3/294 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++
Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 70 DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 188
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVM 317
+ L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KVM
Sbjct: 189 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 248
Query: 318 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ-RIAQAEAM 370
I+ D ERGR+SLSTK+LEP PG M+++ LV E A+EMA+ FRQ R+A+A+ +
Sbjct: 249 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 297 bits (761), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 213/293 (72%), Gaps = 2/293 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I
Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ +
Sbjct: 67 NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A
Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D
Sbjct: 186 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 245
Query: 314 LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQ 366
+KVMI+ D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA +R+++ Q
Sbjct: 246 VKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 173/293 (59%), Gaps = 4/293 (1%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
+P + + ++F ALE +S+ G V+G V GA +DI K+ A+LP +EA
Sbjct: 2 SPSAANTPSYDDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAA 61
Query: 134 IHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+H + +E +P +E EF++I + D + +SLR + E AW R +LQ V+
Sbjct: 62 LHAVLDLEAH--LPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQ 119
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
KV G+NKGGV A++EGLR F+P S ++ K + L GK L + F+EV+ +LVLS R
Sbjct: 120 VKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSER 179
Query: 253 KAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + G
Sbjct: 180 QAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIG 239
Query: 312 DTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 364
D ++ ++++ D +GR+SLSTK LE PG+++ N + A + A+ R+++
Sbjct: 240 DPIQALVVAIDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 157/259 (60%), Gaps = 4/259 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IK 138
SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ +
Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELN 66
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ ++ G
Sbjct: 67 NFNSLNIND--TREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGF 124
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGG++ +EG+ GFVP S +++ S K + LK + V+E+ + L+LS+R+A+ A
Sbjct: 125 NKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQ 184
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVM 317
+ + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K +
Sbjct: 185 ASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAV 244
Query: 318 ILSHDRERGRVSLSTKKLE 336
I+ D+++GR+SLS K L+
Sbjct: 245 IIHVDKKQGRLSLSMKHLK 263
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 156/257 (60%), Gaps = 4/257 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKH 139
FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ + +
Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNN 67
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ + G N
Sbjct: 68 FTSLNIND--TREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFN 125
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADS 258
KGG++ +EG+ GFVP S + + +E+ K + LK + V+E+ + L+LS+R+A+ + +
Sbjct: 126 KGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQA 185
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
+ L +G+++ G + + PYG FI +G + GL+H+S+I+ + I++ + GDT+K +I
Sbjct: 186 SSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVI 245
Query: 319 LSHDRERGRVSLSTKKL 335
+ D+++GR+SLS K L
Sbjct: 246 IHVDKKQGRLSLSMKHL 262
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVMILS 320
L +G +V GT+ S + G +DIG I+ L + ++S ++ + T L DT + +L
Sbjct: 24 LNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLLD 83
Query: 321 HDRERGRVSLSTKKLE 336
++ + ++ LS ++LE
Sbjct: 84 YNIQSKQLILSIRRLE 99
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 9/278 (3%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F+L+EF AL+K+D+++E G V G + N G VD KS ++P QE +
Sbjct: 9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAE 68
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+E++ + +F++ E + + LS R +Q + +WE +L+ ++ V G N
Sbjct: 69 IEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTN 127
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADS 258
KGGVV +VEGLRGF+P S + K + L+G+ L +E +++ ++LVL+ R+ A+S
Sbjct: 128 KGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAES 187
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V +
Sbjct: 188 MGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYV 247
Query: 319 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEM 356
D + R+SLST+ LE PG+++ EK +EM
Sbjct: 248 QEIDEYKNRISLSTRILETYPGELV-------EKFDEM 278
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 157/287 (54%), Gaps = 22/287 (7%)
Query: 71 CRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPT 129
CR ++ +S T EF +ALE ++G V G + DN A+V ++ +P
Sbjct: 27 CRRT-LDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPA 85
Query: 130 QEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQ 185
+E + I +E I G E V+I +D + +LS + + AWE +
Sbjct: 86 REYSDDRNINLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAE 143
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEE 243
+ V KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D
Sbjct: 144 GD--TVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 244 QSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVS 294
+RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS
Sbjct: 202 NARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVS 260
Query: 295 QISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 341
+ISHDRV + A VL GD + V IL+ D E+GR+SLS K + P D
Sbjct: 261 EISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWD 307
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQS 245
VV+G V G ++ G+ G V S+IS K+ A+ L G + +K + +D E+
Sbjct: 233 VVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKG 292
Query: 246 RLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R
Sbjct: 293 RISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKR 352
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+ + + VL+ GD ++V +L R+SLS K LE P
Sbjct: 353 IENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 15/257 (5%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERG 326
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV +LS DR+
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNE 249
Query: 327 RVSLSTKKLEPTPGDMI 343
R+SLS K P P + I
Sbjct: 250 RISLSIKDTLPGPWNQI 266
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 29/259 (11%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILS 320
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV +L
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLD 329
Query: 321 HDRERGRVSLSTKKLEPTP 339
+ R+SLS ++LE TP
Sbjct: 330 VNENEERISLSMRELEETP 348
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GD + V +L D +R RVSLS K + P
Sbjct: 254 VGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 19/245 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L P+GAF+ + GI GL+H+S+++ V V+ GD V ++ D ER R+S
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359
Query: 330 LSTKK 334
LS K+
Sbjct: 360 LSLKQ 364
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + GT KG V N GA VD+ + E I H E +V E V
Sbjct: 205 NLQKGTIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSE--VVQVGDEVTVE 261
Query: 156 IGENEAD-DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ + + D + + LSL+ Q E W + + +V GKV G VE G+ G
Sbjct: 262 VLDVDMDRERVSLSLKATQ-EDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGL 320
Query: 214 VPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
V S+++ + +G D +K +++D E+ R+ LS ++A D
Sbjct: 321 VHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 149/267 (55%), Gaps = 14/267 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEE 142
E+F +A++K G V+GT+ D L+DI K+ +P +E I H + E
Sbjct: 20 EDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEV 79
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
+ G + E +++ + + + L+LS + QYE AW L+ +D VKG V+ KGG
Sbjct: 80 VSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGG 137
Query: 203 VVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q+
Sbjct: 138 LILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196
Query: 261 --------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q G+
Sbjct: 197 EVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGN 256
Query: 313 TLKVMILSHDRERGRVSLSTKKLEPTP 339
+ V +L D +R RVSLS K + P
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDP 283
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 19/245 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGIVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L P+GAF+ + GI GL+H+S+++ V V+ GD V ++ D ER R+S
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359
Query: 330 LSTKK 334
LS K+
Sbjct: 360 LSLKQ 364
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
EF + L+K G KG V N GA VD+ + E I H E
Sbjct: 201 EFLNQLQK-------GAIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSE-- 250
Query: 145 IVPGLKEEFVIIGENEADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+V E V + + + D V LSL+ Q E W + + +V GKV G
Sbjct: 251 VVQVGNEVTVEVLDVDMDRERVSLSLKATQ-EDPWRHFARTHAIGQIVPGKVTKLVPFGA 309
Query: 204 VAEVE-GLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
VE G+ G V S+++ + +G D +K +++D E+ R+ LS ++A D
Sbjct: 310 FVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 145/262 (55%), Gaps = 26/262 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSH 321
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV +LS
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSV 245
Query: 322 DRERGRVSLSTKKLEPTPGDMI 343
D + R+SLS K +P P + I
Sbjct: 246 DADTQRISLSIKAAQPGPWENI 267
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKK 334
F++I G+ GL+HVSQI++ V + VL+ G +KV +L R+SLS K+
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EG+RGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGVRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S + ++ AE +G++ K EV+ +++R +LS R+ + + +L +
Sbjct: 134 PASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRE 324
G VV G V + +GAFID+GG++GL+H++++SH+R +V+ G+ ++V IL + E
Sbjct: 194 GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEE 253
Query: 325 RGRVSLSTKKLEPTPGDMI 343
GRVSLS K P P D +
Sbjct: 254 EGRVSLSLKATVPGPWDGV 272
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
VV GKV G ++ G+ G V +++S + +G+++ +K ++++EE+
Sbjct: 196 VVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEG 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + + +L G VV GTV+ L +GAF+++ GI+GL+HVSQISH R
Sbjct: 256 RVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKR 315
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+ + L+ G ++V +L + + RVSLS K LE P
Sbjct: 316 IENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 255 MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGG--INGLLHVSQISHDRVADIATVLQPGD 312
+ +S +Q+ G VV V ++ A + I G + G+L + ++++DR ADI ++ G+
Sbjct: 7 LLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVKVGE 66
Query: 313 TLKVMIL 319
L V++L
Sbjct: 67 VLDVLVL 73
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPTPGDMIRNP---KLVFEKAEEMAQTFRQRIA 365
LS K P + +P K E EE T I
Sbjct: 345 LSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIG 383
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPTPGDMIRNP---KLVFEKAEEMAQTFRQRIA 365
LS K P + +P K E EE T I
Sbjct: 345 LSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIG 383
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPTPGDMIRNP---KLVFEKAEEMAQTFRQRIA 365
LS K P + +P K E EE T I
Sbjct: 345 LSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIG 383
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPTPGDMIRNP---KLVFEKAEEMAQTFRQRIA 365
LS K P + +P K E EE T I
Sbjct: 345 LSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIG 383
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPTPGDMIRNP---KLVFEKAEEMAQTFRQRIA 365
LS K P + +P K E EE T I
Sbjct: 345 LSIKATLPNEDVVESDPSTTKAYLENEEEDNPTIGDMIG 383
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 19/261 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV I S DR
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
+ R+SLS K PTP + I+
Sbjct: 253 DTERISLSIKDTLPTPFENIK 273
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 12/189 (6%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q + G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V IL D E RVS
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVS 344
Query: 330 LSTKKLEPT 338
LS K P
Sbjct: 345 LSIKATLPN 353
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 17/260 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-IG 157
G KV G V +++ +V I K + +P + H I++ E E +V I
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIE 75
Query: 158 ENEADDS--LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+E +DS +LS R ++ E ++E ++ D +++ KV KGG+V +V G RGFVP
Sbjct: 76 VDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGI 264
S IS+ + + G+ + +K E+D E +R++LS RKA+ ++ L
Sbjct: 135 ASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQAENDVKKASLLESLNA 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRE 324
G V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G + V + S +++
Sbjct: 194 GDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKD 253
Query: 325 RGRVSLSTKKLEPTPGDMIR 344
R+SLS K PTP + I+
Sbjct: 254 AERISLSIKDTLPTPFESIK 273
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V+KGKV G ++ G+ G V S++S + + E+++ G+++ +K V+++
Sbjct: 196 VIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAE 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + + + Q V+ G V L +GAF++I G+ GL+H+S+I+H+
Sbjct: 256 RISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEH 315
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 337
+ L+PG + V IL D E R+SLS K P
Sbjct: 316 IGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLP 352
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 15/259 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G KV G V + + +V + AK + +P + H I + +A V +V E
Sbjct: 16 GDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVTKVE 75
Query: 159 NEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ ++ + +LS R ++ E ++E ++ + ++ KV KGG+V +V G RGFVP
Sbjct: 76 YDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIG 265
S IS+ + + G+ L LK E+D +R++LS + A A+ L G
Sbjct: 135 ASLISTDFIEDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEG 194
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER 325
V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G+T+ V I S D++
Sbjct: 195 DVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDS 254
Query: 326 GRVSLSTKKLEPTPGDMIR 344
R+SLS K P+P + I+
Sbjct: 255 ERISLSIKDTLPSPFESIK 273
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 12/190 (6%)
Query: 161 ADDSLVLSLRMIQ-YELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ ++LS + ++ E A ++ L+S E V++GKV G ++ G+ G V S
Sbjct: 164 ANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVS 223
Query: 218 QISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + + E++ +G+ + +K VD++ R+ LS + + + + G V+
Sbjct: 224 ELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIE 283
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRV 328
GTV L +GAF++I G+ GL+H+S+ISH + + L+PG + V +L D E R+
Sbjct: 284 GTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERI 343
Query: 329 SLSTKKLEPT 338
SLS K P
Sbjct: 344 SLSIKATLPN 353
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 42/298 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GTV LV
Sbjct: 3 ESFAQLFEESLKNIKTRP------------------------GSIIQGTVVAITKDTILV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P I + K+ + E + G + + + + +LS +
Sbjct: 39 DAKLKSESKIP-----IDQFKNSQGELEVKVGDQIDVALDAIEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW Q + V G + G KGG E+E +R F+P S + + E L GK+L
Sbjct: 94 AWLTLEQAYKDSKTVVGLINGKVKGGFTVELEDIRAFLPGSLVDIRPVRETMHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G +V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
G++GLLH++ ++ RV + ++ GD +K+ IL DRE+ RVSL K+L P I
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKI 270
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + I+ V E + G + EF +I ++ +++V+S R +I+ E ER
Sbjct: 129 AFLP---GSLVDIRPVRETMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--EL--LGKDLPLKF 237
L++ E ++V G V G ++ G+ G + + ++ K E+ +G ++ +K
Sbjct: 186 LETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKI 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E+ R+ L ++ D ++ + + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + ++Q +KVMIL D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNP 353
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 31/260 (11%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V + GA VD+ L + ++KH E + G + + I+ +
Sbjct: 192 GLIVSGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNIGDEVKIKILKFD 249
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ L L+ + + W + + E + G+V G E+E G+ G V S+
Sbjct: 250 REKIRVSLGLKQLSDD-PWTKISERYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVHVSE 308
Query: 219 ISSKSTAEELLGKDL-PLKFVEV-----------DEEQSRLVL-----SNRKAMADSQAQ 261
+ + K++ P K V+V DEE+ R+ L N M S+ +
Sbjct: 309 M-------DWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSK-K 360
Query: 262 LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIAT-VLQPGDTLKVMIL 319
GS V+G ++S+ +G FI + G I+GL+H+S IS + + + + G+ + ++L
Sbjct: 361 YNKGSHVVGKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVL 420
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D +R R+SL K+L+ P
Sbjct: 421 QVDPDRERISLGIKQLQEDP 440
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P + + K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIP-----VEQFKNAQGEIEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + E V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWLMLEKAYEESATVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D L + G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK-KLEPTPGDMIRN 345
+ G L S+ S DR+ D V+ GD ++ DR+ VSLS + K E D I +
Sbjct: 474 VEGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAKDEADEKDAIAS 533
Query: 346 PKLVFEKAEE------MAQTFR 361
V K EE MA+ F+
Sbjct: 534 ---VNNKQEEGNFSNAMAEAFK 552
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 137/269 (50%), Gaps = 38/269 (14%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV---- 154
+G V G + + ++I K +P E +++ G LKE F
Sbjct: 308 VGASVTGEIIQVSEKEVFLNINYKRDGVIPKSE--------IDDDG--KDLKELFTVGDK 357
Query: 155 ----IIGENEADDSLVLSLRMIQYELAWERCRQL----QSEDVVVKGKVVGANKGGVVAE 206
II +AD+ +VLS++ +Q E ++ ++ + +VVVK V KGG++A
Sbjct: 358 IVAKIIKLKDADNYVVLSVKELQREQGYKEIKEAFENKTTLNVVVKEDV----KGGIIAS 413
Query: 207 VEGLRGFVPFSQIS--SKSTAEELLGKDLPLKFVE--VDEEQSRLVLSNRKAMADSQAQ- 261
+G+R F+P S + +E +GK + +E + Q+++V S R ++ + +
Sbjct: 414 YKGIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKV 473
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G VV G V+ L +GAF++I G++GLLHVS+IS RV A VL+ GD +
Sbjct: 474 EETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKI 533
Query: 315 KVMILSHDRERGRVSLSTKKLEPTPGDMI 343
KV +LS D+E ++SLS KKL P + +
Sbjct: 534 KVYVLSVDKENKKLSLSVKKLTENPWNNV 562
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 13/171 (7%)
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LG 230
E W + + Q VV+G+V G E+EG+ G + S+IS + A+ L +G
Sbjct: 475 ETVWNKLEEGQ----VVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIG 530
Query: 231 KDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG- 285
+ + + VD+E +L LS +K + + + +GSVV+G V +GAF+ +
Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLEP 590
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336
G++GL+H+S+ISH R+A + L G+ +K IL E ++ LS +++E
Sbjct: 591 GVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVE 641
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G+ V GTV LVD KS + +P E + + + G + + V G
Sbjct: 21 GSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFLNAQGELEIQVGDTVNVALDAVEDGFG 80
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E S + +++E +W + E V G + G KGG E+ G+R F+P S +
Sbjct: 81 ETKLS---REKAVRHE-SWIELEKAYEEKATVIGLIXGKVKGGFTVELNGVRAFLPGSLV 136
Query: 220 SSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
++ A+ LLGK+L K +++D++++ +V+S R + +Q L GS V
Sbjct: 137 DTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVK 196
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD + V +L D++R RVS
Sbjct: 197 GVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVS 256
Query: 330 LSTKKLEPTP 339
L K+L P
Sbjct: 257 LGLKQLGQDP 266
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 123/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + + EA + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQV 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E VKG V + G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLH 292
++ D++++R+ L ++ D A + + S + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GDT++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANP 353
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 23/256 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G++VKG V GA VD+ L + ++KH E IV E V + +
Sbjct: 192 GSEVKGVVKNLTEYGAFVDLGG-VDGLLHITDMAWKRVKHPSE--IVNVGDEVTVKVLKF 248
Query: 160 EADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFS 217
+ D + V L L+ + + W + + + GKV G E+ +G+ G V S
Sbjct: 249 DKDRTRVSLGLKQLGQD-PWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVS 307
Query: 218 QIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
++ SK + LG + + +E+DEE+ R+ L ++ A+ Q G
Sbjct: 308 EMDWTNKNIHPSKVVS---LGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKG 364
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIAT-VLQPGDTLKVMILSHDR 323
V G ++S+ +G FI + GGI+GL+H+S IS + A + GD + ++L+ D
Sbjct: 365 DKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAVDA 424
Query: 324 ERGRVSLSTKKLEPTP 339
+ R+SL K+LE P
Sbjct: 425 VKERISLGIKQLEEDP 440
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 142/281 (50%), Gaps = 17/281 (6%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
A + + +T S+ E+ D + G +KGTV + +VD+ KS +P E
Sbjct: 25 VAEFKDLLYTAHRITSSEEESDNEIQPGAILKGTVVDINKDFVVVDVGLKSEGVIPMSEF 84
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
G+V G + E + + + +VLS + WE E +VK
Sbjct: 85 IDSS------EGLVLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVK 138
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKS--TAEELLGKDLPLKFVEVDEEQSRLVLS 250
G++ KGG++ ++ G+ F+P SQI +K ++ +GK K ++++ E+ +V+S
Sbjct: 139 GQITRKVKGGLIVDI-GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVS 197
Query: 251 NRKAM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
R+ + A+ Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+
Sbjct: 198 RRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIR 257
Query: 303 DIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
+ +++ L+V+ILS D+E+GRV+L K+ E P + I
Sbjct: 258 HPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 135/261 (51%), Gaps = 18/261 (6%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
+ E G+ VKG + G +VDI + A+LP + KIK++++ G EF I
Sbjct: 130 HCEEGSIVKGQITRKVKGGLIVDIGME--AFLPGSQIDNKKIKNLDD---YVGKVCEFKI 184
Query: 156 IGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRG 212
+ N ++V+S R +++ E ++ ++ + KG V GV +++G+ G
Sbjct: 185 LKINVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDG 244
Query: 213 FVPFSQISSKSTAE--EL--LGKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGI 264
+ + ++ K E+ L ++L + + VD+E+ R+ L ++ D + +
Sbjct: 245 LLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPP 304
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHD 322
G V+G + L PYGAFI+I GI GL+H+S++S + D + V+ GD ++ ++LS
Sbjct: 305 GKRVLGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQ 364
Query: 323 RERGRVSLSTKKLEPTPGDMI 343
++ G++SL K+ E P D I
Sbjct: 365 KDEGKISLGLKQTERNPWDNI 385
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 119/269 (44%), Gaps = 32/269 (11%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V G + GA ++I E I + H+ E V
Sbjct: 292 HNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEI-----------EEGIEGLIHISEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + +++VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHVNAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ ++ +A G+V+ G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIE 520
Query: 306 TVLQPGDTLKVMILSHDRERGRVSLSTKK 334
++ G+ + ++ D + +VSLS K+
Sbjct: 521 DIISIGENVSAKVIKLDPDHKKVSLSVKE 549
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 15/257 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G KG V + G +D+ L + +I+H E + + E +I+
Sbjct: 219 IGEYRKGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEM-VELNQELEVIILSV 276
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
++ + L L+ ++ WE + V GK+V G E+E G+ G + S
Sbjct: 277 DKEKGRVALGLKQKEHN-PWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHIS 335
Query: 218 QISSKST---AEELL--GKDLPLKFVEVDEEQSRLVL----SNRKAMADSQAQLGIGSVV 268
++S E++ G ++ + + +++ ++ L + R + + + IG V
Sbjct: 336 EMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHV 395
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERG 326
+++L YGAF+++ GI GL+H+S +S +V+ + + + G++++ +ILS D+E
Sbjct: 396 NAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESK 455
Query: 327 RVSLSTKKLEPTPGDMI 343
+++L K+L P + I
Sbjct: 456 KITLGVKQLSSNPWNEI 472
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 243
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 303
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ A+ Q
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKANPWQQFAET 360
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMIL 319
G V G ++S+ +G FI + GGI+GL+H+S IS + + A + GD + ++L
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D ER R+SL K+L P
Sbjct: 421 QVDAERERISLGVKQLAEDP 440
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + G+ + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
+ G L S+ S DRV D VL GD ++ DR+ +SLS +
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 243
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 303
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ A+ Q
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKANPWQQFAET 360
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMIL 319
G V G ++S+ +G FI + GGI+GL+H+S IS + + A + GD + ++L
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D ER R+SL K+L P
Sbjct: 421 QVDAERERISLGVKQLAEDP 440
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + G+ + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
+ G L S+ S DRV D VL GD ++ DR+ +SLS +
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 243
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 303
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ A+ Q
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKANPWQQFAET 360
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMIL 319
G V G ++S+ +G FI + GGI+GL+H+S IS + + A + GD + ++L
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D ER R+SL K+L P
Sbjct: 421 QVDAERERISLGVKQLAEDP 440
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + G+ + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
+ G L S+ S DRV D VL GD ++ DR+ +SLS +
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 42/294 (14%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
G++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 188 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 243
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 303
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ A+ Q
Sbjct: 304 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKANPWQQFAET 360
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMIL 319
G V G ++S+ +G FI + GGI+GL+H+S IS + + A + GD + ++L
Sbjct: 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 420
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D ER R+SL K+L P
Sbjct: 421 QVDAERERISLGVKQLAEDP 440
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + G+ + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333
+ G L S+ S DRV D VL GD ++ DR+ +SLS +
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 520
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 142/260 (54%), Gaps = 17/260 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-IG 157
G KV G V +++ +V I K + +P + H I++ E V E +V I
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIE 75
Query: 158 ENEADDS--LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+E +D+ +LS R ++ E ++E ++ D V++ +V KGG+V +V G RGFVP
Sbjct: 76 FDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM---------ADSQAQLGI 264
S IS+ + + G+ + +K E+D E +R++LS RKA+ A L
Sbjct: 135 ASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKASILDSLNE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRE 324
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G+ +KV + S +++
Sbjct: 194 GDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKD 253
Query: 325 RGRVSLSTKKLEPTPGDMIR 344
R+SLS K PTP + I+
Sbjct: 254 SERISLSIKDTLPTPFENIK 273
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V+ GKV G ++ G+ G V S++S + T EE++ G+ + +K V+++
Sbjct: 196 VIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSE 255
Query: 246 RLVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + + + + + V+ GTV L +GAF++I + GL+H+S+I H
Sbjct: 256 RISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKH 315
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 337
+ VL+PG + V IL D + R+SLS K P
Sbjct: 316 IGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLP 352
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQS 245
D VVKG + G KGG +V G+R F+P S + + + L GK+L K +++D++++
Sbjct: 105 DEVVKGVINGKVKGGFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRN 164
Query: 246 RLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+V+S R + A++ A+ L G V G V++L YGAF+D+GG++GLLH++ ++
Sbjct: 165 NVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224
Query: 298 HDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
R+ + ++ GD + V +L DRER RVSL K+L P
Sbjct: 225 WKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 209 GLRGFVPFSQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S IS EE + G +L + VD E+ R+ L ++ D +
Sbjct: 386 GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYA 445
Query: 264 I----GSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVMI 318
GS+V GTV+ + GA I +G I G+L S+IS DRV D VL+ G+ ++ I
Sbjct: 446 SLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKI 505
Query: 319 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF 378
+S DR+ +SLS K K V ++ + M + +Q + A D++R
Sbjct: 506 ISIDRKSRVISLSVK------------SKDVDDEKDAMKELRKQEVESAGPTTIGDLIRA 553
Query: 379 QPES 382
Q E+
Sbjct: 554 QMEN 557
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG + G VD+ A+LP + ++ V + + G + EF +I ++
Sbjct: 108 VKGVINGKVKGGFTVDVNG-IRAFLP---GSLVDVRPVRDTTHLEGKELEFKVIKLDQKR 163
Query: 163 DSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++V+S R +++ E + ER L+S E VKG V G ++ G+ G + + +
Sbjct: 164 NNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDM 223
Query: 220 SSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGT 271
+ K E++ G ++ +K ++ D E++R+ L ++ D +A+ G+ V+
Sbjct: 224 AWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMAR 283
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVS 329
V +L YG F ++ G+ GL+HVS++ ++ + V+Q GD ++V +L D ER R+S
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRIS 343
Query: 330 LSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR 361
L K+ + P + + F K + ++ T +
Sbjct: 344 LGIKQCKSNPWEDFSSQ---FNKGDRISGTIK 372
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 46/296 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GT+ + LV
Sbjct: 3 ESFAQLFEESLKEIKTRP------------------------GSIIRGTIVSIEKDMVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL---VLSLRMIQY 174
D KS + +P ++ G++ + + + + +D +LS +
Sbjct: 39 DAGLKSESAIPVEQFQ-------NSQGLLDIQVGDQIDVALDAIEDGFGETLLSREKAKR 91
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
AW + + V G + G KGG E+ +R F+P S + + + L GK+
Sbjct: 92 HEAWLILEKAHEKSETVIGIINGKVKGGFTVELNDIRAFLPGSLVDVRPVRDTIHLEGKE 151
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFID 283
L K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D
Sbjct: 152 LEFKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVD 210
Query: 284 IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
+GG++GLLH++ ++ RV + ++ GD + + IL DRER RVSL K+L P
Sbjct: 211 LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDP 266
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G VKG V + GA VD+ L + ++KH E + G + I
Sbjct: 188 NLQEGMHVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNVGDEINIKI 245
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFV 214
+ + + L L+ + E W + E+ + G+V G E+E G+ G V
Sbjct: 246 LKFDRERTRVSLGLKQLG-EDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 215 PFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG--- 263
S++ SK + + + L ++DEE+ R+ L ++ + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVTVNDVVEVMVL---DIDEERRRISLGLKQCKINPWKEFSETH 361
Query: 264 -IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILS 320
G V+G ++S+ +G FI + GGI+GL+H+S IS + A V + D + ++L
Sbjct: 362 KKGVHVLGKIKSITDFGIFIGLNGGIDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQ 421
Query: 321 HDRERGRVSLSTKKLEPTP 339
D ER R+SL K+LE P
Sbjct: 422 VDAERERISLGIKQLEEDP 440
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 119/228 (52%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 129 AFLP---GSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQL 185
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 186 LENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKI 245
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + + + G V +L YG F++I G+ GL+H
Sbjct: 246 LKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEGVEGLVH 305
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ D ++VM+L D ER R+SL K+ + P
Sbjct: 306 VSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKINP 353
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 46/302 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GT+ + LV
Sbjct: 3 ESFAQLFEESLKEIKTRP------------------------GSIIRGTIVSIEKDIVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL---VLSLRMIQY 174
D KS + +P ++ K+ + G++ + + + + +D +LS +
Sbjct: 39 DAGLKSESAIPVEQ-----FKNAQ--GLLDVKVGDQIDVALDAIEDGFGETLLSREKAKR 91
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
AW Q + V G + G KGG E+ +R F+P S + + + L GK+
Sbjct: 92 HEAWLILEQAHEKSETVIGIINGKVKGGFTVELNEIRAFLPGSLVDVRPVRDTIHLEGKE 151
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFID 283
L K +++D++++ +V+S R+A+ +S+ L G + G V++L YGAF+D
Sbjct: 152 LEFKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVD 210
Query: 284 IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
+GG++GLLH++ ++ RV + ++ GD + V IL D+ER RVSL K+L P I
Sbjct: 211 LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDPWIAI 270
Query: 344 RN 345
N
Sbjct: 271 SN 272
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 21/255 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++KG V + GA VD+ L + ++KH E + G + I+ +
Sbjct: 192 GIEIKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNVGDEINVKILKFD 249
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ + L L+ + E W E + + G+V G E+E G+ G V S+
Sbjct: 250 KERTRVSLGLKQLG-EDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE 308
Query: 219 IS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGS 266
+ SK A + + + +++DEE+ R+ L ++ + + G
Sbjct: 309 MDWTNKNIHPSKVVA---VNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGI 365
Query: 267 VVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRE 324
V G ++S+ +G FI + GGI+GL+H+S IS + A + GD + ++L D E
Sbjct: 366 HVSGKIKSITDFGIFIGLKGGIDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAE 425
Query: 325 RGRVSLSTKKLEPTP 339
R R+SL K+LE P
Sbjct: 426 RERISLGIKQLEEDP 440
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-----ACIHKIKHVEEAGIVPGLKEEFV 154
G K+ G V + G V+I + E IH K V IV + +
Sbjct: 277 GIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVAVNNIV-----DVI 331
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGF 213
++ +E + L L+ + W+ + + + V GK+ G+ ++G + G
Sbjct: 332 VLDIDEERRRISLGLKQCKIN-PWQEFSETHKKGIHVSGKIKSITDFGIFIGLKGGIDGL 390
Query: 214 VPFSQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGI 264
V S IS K + EE + G ++ ++VD E+ R+ L ++ D +
Sbjct: 391 VHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDPFNVYVSNHKK 450
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G+++ G ++ + + G+ G + S S +I L+ DT+ V I + DR
Sbjct: 451 GAIITGIIKDFDKKTVTVKLSDGVEGNIKFSDSSRVNSEEIIKKLKIDDTILVKISNFDR 510
Query: 324 ERGRVSLS 331
+ ++L+
Sbjct: 511 KNRIINLT 518
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
Query: 84 EEFHSALEKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+F LE D + + T VKG V N +VD+ K+ +P E + E
Sbjct: 22 EDFSKMLETVDTSHIKEKTVVKGQVIEIKNDMVIVDVGLKNEGRIPKSEFL-----ALPE 76
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
G V E F+ E +++ + ++ EL W + + S+ V G + G KGG
Sbjct: 77 VGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGG 132
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G+ F+P SQ+ + + ++ P K + +D++ +V+S R + +S++
Sbjct: 133 FTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRS 192
Query: 261 Q--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL+
Sbjct: 193 EARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQ 252
Query: 313 TLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 344
+KVM++ D + R+SL K+L+ P + I+
Sbjct: 253 KVKVMVIKFDEKTKRISLGIKQLDSNPWEAIK 284
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++GTV + GA +D+ + L + ++ H E + K + ++I +
Sbjct: 205 GMVLEGTVKNITDYGAFIDLGS-VDGLLHLTDISWGRVNHPSEV-LEFNQKVKVMVIKFD 262
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQ 218
E + L ++ + WE ++ + GKV GV E+ +GL G V S+
Sbjct: 263 EKTKRISLGIKQLDSN-PWEAIKEEFPVGKKMTGKVTNFADYGVFIELRDGLEGLVHSSE 321
Query: 219 ISSKSTAEE-----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVI 269
IS + + +G+++ +EVD E+ R+ LS ++ + + +G+++
Sbjct: 322 ISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLIKFAENNPVGTIIK 381
Query: 270 GTVQSLKPYGAFIDIGG-INGLLHVSQIS-HDRVADIATVLQPGDTLKVMILSHDRERGR 327
++++ +G F+ +G ++G++H IS D+ D+ + GD ++ +L+ + E+ +
Sbjct: 382 APIRNITDFGIFVALGNNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQ 441
Query: 328 VSLSTKKLEPTP 339
VSL K+L P P
Sbjct: 442 VSLGVKQLSPNP 453
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 136/272 (50%), Gaps = 20/272 (7%)
Query: 84 EEFHSALEKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+F LE D + + T VKG V N +VD+ K+ +P E + E
Sbjct: 22 EDFSKMLETVDTSHIKEKTVVKGQVIEIKNDIIIVDVGLKNEGRIPKSEFL-----ALPE 76
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
G V E F+ E +++ + ++ EL W + + S+ V G + G KGG
Sbjct: 77 VGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGG 132
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G+ F+P SQ+ + + ++ P K + +D++ +V+S R + +S++
Sbjct: 133 FTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRS 192
Query: 261 Q--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL
Sbjct: 193 EARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQ 252
Query: 313 TLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 344
+KVM++ D + R+SL K+L+ P + I+
Sbjct: 253 KVKVMVIKFDEKNKRISLGIKQLDSNPWEAIK 284
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++GTV + GA +D+ + L + ++ H E + K + ++I +
Sbjct: 205 GMVLEGTVKNITDYGAFIDLGS-VDGLLHLTDISWGRVNHPSEV-LDFNQKVKVMVIKFD 262
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQ 218
E + + L ++ + WE ++ + GKV GV E+ +GL G V S+
Sbjct: 263 EKNKRISLGIKQLDSN-PWEAIKEEFPVGKQMTGKVTNFADYGVFIELKDGLEGLVHSSE 321
Query: 219 ISSKSTAEE-----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVI 269
IS + + +G+++ +EVD E+ R+ LS ++ + + +G+++
Sbjct: 322 ISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLTKFAENNPVGTIIK 381
Query: 270 GTVQSLKPYGAFIDIGG-INGLLHVSQIS-HDRVADIATVLQPGDTLKVMILSHDRERGR 327
++++ +G F+ +G ++G++H IS D+ D+ + GD ++ +L+ + E+ +
Sbjct: 382 APIRNITDFGIFVALGNNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQ 441
Query: 328 VSLSTKKLEPTP 339
VSL K+L P P
Sbjct: 442 VSLGIKQLSPNP 453
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 16/280 (5%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
M + T ++F + LE+ ++L G KG V + A+VD+ K +P +E
Sbjct: 1 MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
++ + G + E + A VLS + E +W+R V+G
Sbjct: 61 ----AKAKDGTLKVGDEVEVYVERIENALGEAVLSREKARREESWQRLEVKFEAGERVEG 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSN 251
+ KGG +++G F+P SQ+ + + L+ P + +++D+ + +V+S
Sbjct: 117 IIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSR 176
Query: 252 RKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
R + +S+A+ L G VV G V+++ YGAF+D+GGI+GLLHV+ ++ RV
Sbjct: 177 RTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNH 236
Query: 304 IATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
+ +L G +KV I+ ++E R+SL K+LE P D I
Sbjct: 237 PSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDGI 276
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 112/221 (50%), Gaps = 16/221 (7%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
+ ++ + E G +V+G +F G VD+ + A+LP + I I+ V P
Sbjct: 100 SWQRLEVKFEAGERVEGIIFNQVKGGFTVDLDG-AVAFLPRSQVDIRPIRDVTPLMHNP- 157
Query: 149 LKEEFVIIGENEADDSLVLSLRMIQYE-LAWERCRQLQS--EDVVVKGKVVGANKGGVVA 205
+ F I+ ++ ++V+S R + E A +R +Q+ E VV+G V G
Sbjct: 158 --QPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFV 215
Query: 206 EVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261
++ G+ G + + ++ + E+L G+ + ++ + +++E R+ L ++ +D
Sbjct: 216 DLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDG 275
Query: 262 LG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
+G +G + GTV ++ YGAF+++ GI GL+H+S++S
Sbjct: 276 IGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMS 316
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 265 GSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVAD-IATVLQPGDTLKVMILSHD 322
G+ V G V++ +G FI + G ++G++H+S + +R + + GD ++ ++L D
Sbjct: 370 GTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVD 429
Query: 323 RERGRVSLSTKKL 335
++ R+SL K+L
Sbjct: 430 VDKERISLGIKQL 442
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 142/288 (49%), Gaps = 22/288 (7%)
Query: 70 RCRTAP-MEGVSFTLEEFHSALEKYDFNSELGTK--VKGTVFCTDNRGALVDITAKSSAY 126
+ R P + +++ EE S + K S + K VKG V N +VD+ K+
Sbjct: 6 KQRFVPQLAAINYQFEEDFSKMLKTVDTSHIKEKTVVKGQVIEIKNDMIIVDVGLKNEGR 65
Query: 127 LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+P E + E G V E F+ E +++ + ++ EL W + + S
Sbjct: 66 IPKSEFL-----SLPEVGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCS 116
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
+ V G + G KGG ++ G+ F+P SQ+ + + ++ P K + +D++
Sbjct: 117 KGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKL 176
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+V+S R + +S+++ + G ++ G V+++ YGAFID+G ++GLLH++ I
Sbjct: 177 GNIVVSRRVILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDLGSVDGLLHLTDI 236
Query: 297 SHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 344
S RV + VL+ +KVM++ D + R+SL K+L+ P D I+
Sbjct: 237 SWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIK 284
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 193 GKVVGANKGGVVAEV-EGLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSR 246
GKV GV E+ +GL G V S+IS S ++L G+++ +EVD E+ R
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHR 354
Query: 247 LVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQIS-HDR 300
+ LS ++ + + IG+++ ++++ +G F+ +G ++G++H IS D
Sbjct: 355 VSLSIKQCQENPLIKFAENNPIGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWEDN 414
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
D+ + GD ++ +L+ + E+ +VSL K+L P P
Sbjct: 415 GTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNP 453
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 19/254 (7%)
Query: 101 TKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160
T VKG V N +VD+ K+ +P E + E G V E F+ E
Sbjct: 40 TVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFL-----SLPEVGDVV---EVFIEKIEGR 91
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220
+++ + ++ EL W + + S+ V G + G KGG ++ G+ F+P SQ+
Sbjct: 92 NGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVD 150
Query: 221 SKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIG 270
+ + ++ P K + +D++ +V+S R + +S+++ + G V+ G
Sbjct: 151 VRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGIVLEG 210
Query: 271 TVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSL 330
V+++ YGAFID+G ++GLLH++ IS RV + VL+ +KVM++ D + R+SL
Sbjct: 211 VVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 331 STKKLEPTPGDMIR 344
K+L+ P D I+
Sbjct: 271 GIKQLDSNPWDAIK 284
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 193 GKVVGANKGGVVAEV-EGLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSR 246
GKV GV E+ +GL G V S+IS S ++L G+++ +EVD E+ R
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHR 354
Query: 247 LVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQIS-HDR 300
+ LS ++ + + IG+++ ++++ +G F+ +G ++G++H IS D
Sbjct: 355 VSLSIKQCQENPLIKFAENNPIGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWEDN 414
Query: 301 VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
D+ + GD ++ +L+ + E+ +VSL K+L P P
Sbjct: 415 GTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNP 453
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 12/160 (7%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLV 248
V G + G KGG E+ G+R F+P S + + + L GK+L K +++D++++ +V
Sbjct: 3 VTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVV 62
Query: 249 LSNRKAMADSQA---------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
+S R+A+ +S++ L G V G V++L YGAF+D+GG++GLLH++ ++
Sbjct: 63 VS-RRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWK 121
Query: 300 RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
RV + ++ GD + V +L DRER RVSL K+L P
Sbjct: 122 RVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 138
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 198
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ ++ Q
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKSNPWQQFAET 255
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMIL 319
G V G ++S+ +G FI + GGI+GL+H+S IS + + A + GD + ++L
Sbjct: 256 HNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL 315
Query: 320 SHDRERGRVSLSTKKLEPTP 339
D ER R+SL K+L P
Sbjct: 316 QVDAERERISLGVKQLAEDP 335
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 16/228 (7%)
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQ 183
A+LP + ++ V + + G + EF +I ++ +++V+S R +I+ E + ER +
Sbjct: 24 AFLP---GSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQL 80
Query: 184 LQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKF 237
L++ E + VKG V G ++ G+ G + + ++ K E++ G ++ +K
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 140
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDIG-GINGLLH 292
++ D E++R+ L ++ D + G+ + G V +L YG F++I G+ GL+H
Sbjct: 141 LKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVH 200
Query: 293 VSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
VS++ ++ + V+ GD ++VM+L D ER R+SL K+ + P
Sbjct: 201 VSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 248
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 24/278 (8%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
M G + T EE S ++ G +KGTV +VD+ KS +P E
Sbjct: 35 MHGFTATEEEPTSEVQP-------GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFI-- 85
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
G+ G + E + + + +VLS + WE E +VKG++
Sbjct: 86 ----DSSEGLSVGAEVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQI 141
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKS--TAEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
KGG++ ++ G+ F+P SQI +K ++ +GK K ++++ ++ +V+S R+
Sbjct: 142 TRKVKGGLIVDI-GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRE 200
Query: 254 AM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
+ A+ Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+ +
Sbjct: 201 LLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPS 260
Query: 306 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343
+++ L+V+ILS D+E+GRV+L K+ E P + I
Sbjct: 261 EMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDI 298
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 125/257 (48%), Gaps = 15/257 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G + KG V + G +D+ L + +I+H E + + E +I+
Sbjct: 219 IGERRKGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEM-VELNQELEVIILSV 276
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
++ + L L+ ++ WE + V+GK+V G E+E G+ G + S
Sbjct: 277 DKEKGRVALGLKQKEHN-PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVS 335
Query: 218 QISSKST---AEELL--GKDLPLKFVEVDEEQSRLVL----SNRKAMADSQAQLGIGSVV 268
++S E++ G ++ + + + +++ ++ L + + + + IG V
Sbjct: 336 EMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRV 395
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERG 326
+++L YGAF+++ GI GL+H+S +S +V+ + + + G+T++ +ILS D+E
Sbjct: 396 TAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESK 455
Query: 327 RVSLSTKKLEPTPGDMI 343
+++L K+L P P D I
Sbjct: 456 KITLGVKQLTPNPWDEI 472
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 32/270 (11%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V+G + GA ++I E I + HV E V
Sbjct: 292 HNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-----------EEGIEGLIHVSEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + + +VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ + +A +GS + G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLTPNPWDEIEAMFPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIE 520
Query: 306 TVLQPGDTLKVMILSHDRERGRVSLSTKKL 335
+L GD + ++ D + +VSLS K+
Sbjct: 521 DILSIGDKVSAKVIKLDPDHKKVSLSIKEF 550
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 17/254 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +KGTV +VD+ KS +P E G+ G + E +
Sbjct: 52 GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFID------SSEGLTVGAEVEVYLDQTE 105
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + +VLS + WE E +VKG++ KGG++ ++ G+ F+P SQI
Sbjct: 106 DDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-GMEAFLPGSQI 164
Query: 220 SSKS--TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVVI 269
+K ++ +GK K ++++ ++ +V+S R+ + A+ Q+ IG
Sbjct: 165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRK 224
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329
G V+++ +G F+D+ GI+GLLH++ ++ R+ + +++ L+V+ILS D+E+GRV+
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVA 284
Query: 330 LSTKKLEPTPGDMI 343
L K+ E P + I
Sbjct: 285 LGLKQKEHNPWEDI 298
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 125/257 (48%), Gaps = 15/257 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G + KG V + G +D+ L + +I+H E + + E +I+
Sbjct: 219 IGERRKGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEM-VELNQELEVIILSV 276
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
++ + L L+ ++ WE + V+GK+V G E+E G+ G + S
Sbjct: 277 DKEKGRVALGLKQKEHN-PWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVS 335
Query: 218 QISSKST---AEELL--GKDLPLKFVEVDEEQSRLVL----SNRKAMADSQAQLGIGSVV 268
++S E++ G ++ + + + +++ ++ L + + + + IG V
Sbjct: 336 EMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRV 395
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERG 326
+++L YGAF+++ GI GL+H+S +S +V+ + + + G+T++ +ILS D+E
Sbjct: 396 TAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESK 455
Query: 327 RVSLSTKKLEPTPGDMI 343
+++L K+L P P D I
Sbjct: 456 KITLGVKQLTPNPWDEI 472
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 32/276 (11%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V+G + GA ++I E I + HV E V
Sbjct: 292 HNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-----------EEGIEGLIHVSEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + + +VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ + + +GS + G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIE 520
Query: 306 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 341
VL GD + ++ D + +VSLS K+ GD
Sbjct: 521 DVLSIGDKVSAKVIKLDPDHKKVSLSIKEFLVHGGD 556
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 28/270 (10%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F +L + D G VK TV +V+ KS +P E ++ E
Sbjct: 7 ELFEKSLTETDLRP--GALVKATVVEVRPDRVIVNAGLKSEGIIPASE-----FRNEE-- 57
Query: 144 GIVPGLKEEFVIIGENEADDS----LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
P + +EF ++ EA D+ LS + AW + +VKG ++
Sbjct: 58 ---PHVGDEFFVV--IEASDNGFGETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERV 112
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-- 255
KGG ++ +R F+P S + K + L K++ K +++D+ ++ +V+S R M
Sbjct: 113 KGGFTVDLNSVRAFLPGSLVDVKPVRDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEA 172
Query: 256 ---ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
A+ QA +L G + G ++++ YGAF+D+GG++GLLH++ ++ RV + +L
Sbjct: 173 ETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLN 232
Query: 310 PGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GD + V +L DR++ RVSL K+L P
Sbjct: 233 VGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 130/253 (51%), Gaps = 17/253 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKG + G VD+ + A+LP + +K V + G + + +F II +
Sbjct: 101 GEMVKGVIIERVKGGFTVDLNS-VRAFLP---GSLVDVKPVRDPGYLEDKEIDFKIIKMD 156
Query: 160 EADDSLVLSLR-MIQYELAWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ +++V+S R +++ E + ER +L+ E +KG + G ++ G+ G +
Sbjct: 157 QRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHI 216
Query: 217 SQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVV 268
+ ++ K ++ L +G ++ +K ++ D ++ R+ L ++ D A++ + S V
Sbjct: 217 TDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRV 276
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERG 326
G V ++ YG F+ + G+ GL+H S++ ++ + V+Q G+ ++VM+L D ER
Sbjct: 277 FGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERR 336
Query: 327 RVSLSTKKLEPTP 339
R+SL K+ + P
Sbjct: 337 RISLGIKQCKRNP 349
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 17/253 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++KG + + GA VD+ L + ++KH + ++ E V + +
Sbjct: 188 GQEIKGVIKNITDYGAFVDLGG-VDGLLHITDMAWGRVKH--PSDLLNVGDEVHVKVLKF 244
Query: 160 EADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
+ D V SL M Q + W + + + V GKV G ++E G+ G V S
Sbjct: 245 DRDKKRV-SLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLEEGVEGLVHTS 303
Query: 218 QI--SSKSTAEELL---GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVV 268
++ ++K+ + G+++ + +E+DEE+ R+ L ++ + + +
Sbjct: 304 ELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKI 363
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRERG 326
G V+S+ +G FI + G I+GL+H+S IS + A + GD ++ +IL D ER
Sbjct: 364 TGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERE 423
Query: 327 RVSLSTKKLEPTP 339
R+SL K+LE P
Sbjct: 424 RISLGIKQLEGDP 436
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W+ + +D + GKV G+ +EG + G V S IS + EE + G
Sbjct: 350 WQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGD 409
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIGG- 286
++ + +D E+ R+ L ++ D + +V+ V+ ++ A +++
Sbjct: 410 EVQAVILGIDPERERISLGIKQLEGDPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQ 469
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336
+ G + ++ ++DRV D+ L GD + V I++ DR+ +++S K +E
Sbjct: 470 VLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 16/248 (6%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+KG V + A++D+ K+ +P +E A + ++ V E F+ EN
Sbjct: 33 IKGKVVAIEKDMAVIDVGLKTEGRVPLREFAGPGRDNEIKVGDTV----EVFLDRIENAL 88
Query: 162 DDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++ VLS + E +W + + + V G + KGG +++G F+P SQ+
Sbjct: 89 GEA-VLSRDKARREESWGKLEKAFQNNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVDI 147
Query: 222 KSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGT 271
+ + L+ P + +++D + +V+S R + +++A+ L G V+ G
Sbjct: 148 RPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGV 207
Query: 272 VQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLS 331
V+++ YGAF+D+GGI+GLLHV+ I+ RV VL G T+KV I+ + E R+SL
Sbjct: 208 VKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLG 267
Query: 332 TKKLEPTP 339
K+L P
Sbjct: 268 MKQLLDDP 275
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 25/261 (9%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N E G + G V + GA VD+ L + ++ H E + G + I
Sbjct: 197 NLEEGQVIDGVVKNITDYGAFVDLGG-IDGLLHVTDIAWRRVNHPTEV-LTIGQTVKVKI 254
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFV 214
I N + L ++ + + W+ + G+V G E+E G+ G +
Sbjct: 255 IKINHETHRISLGMKQL-LDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLI 313
Query: 215 PFSQISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA---- 260
S++S ST++E+ ++ +EVD + R+ L ++ M +
Sbjct: 314 HVSEMSWTKKNMHPGKIVSTSQEV-----EVQVLEVDSVKRRISLGLKQTMRNPWEVFVE 368
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVAD-IATVLQPGDTLKVMI 318
+ +GS V G V++ +G F+ + G ++G++H+S + + + + GD +K ++
Sbjct: 369 KHPVGSTVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVV 428
Query: 319 LSHDRERGRVSLSTKKLEPTP 339
L D E+ R+SL K+LE P
Sbjct: 429 LDVDVEKERISLGVKQLEGDP 449
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 10/201 (4%)
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
V I + E LS E W + + S+ V G + G KGG ++ G+ F
Sbjct: 87 VYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTIFGRVKGGFTVDLSGVVAF 146
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P SQ+ + + ++ P K + +D++ +V+S R + +S+++ +
Sbjct: 147 LPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIK 206
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
G ++ GTV+++ YGAFID+G ++GLLH++ IS RV + VL+ +KVM++ +
Sbjct: 207 EGMILEGTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNE 266
Query: 324 ERGRVSLSTKKLEPTPGDMIR 344
E R+SL K+L+ P + I+
Sbjct: 267 ETKRISLGMKQLDYNPWEKIK 287
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++GTV + GA +D+ + L + ++ H E + K + ++I N
Sbjct: 208 GMILEGTVKNITDYGAFIDLGS-VDGLLHLTDISWARVNHPSEV-LEFNQKVKVMVIKFN 265
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQ 218
E + L ++ + Y WE+ ++ + GKV GV E+ +GL G V S+
Sbjct: 266 EETKRISLGMKQLDYN-PWEKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSE 324
Query: 219 ISSKSTAEE-----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVI 269
IS + + +G+++ +EVD E+ R+ LS ++ + + +G+V+
Sbjct: 325 ISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETNPVGTVIK 384
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQIS-HDRVADIATVLQPGDTLKVMILSHDRERGR 327
++++ +G F+ + ++G++H I+ D ++ + GD ++ +L+ + E+ +
Sbjct: 385 APIRNITDFGIFVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQ 444
Query: 328 VSLSTKKLEPTP 339
+SL K+L P P
Sbjct: 445 ISLGIKQLTPNP 456
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 17/253 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V GT+F G VD++ A+LP + + IK + + +++ F I+ +
Sbjct: 121 GEFVDGTIFGRVKGGFTVDLSG-VVAFLPGSQVDVRPIK---DPSSIMNIRQPFKILSMD 176
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ ++V+S R I E E ++ S E ++++G V G ++ + G +
Sbjct: 177 KKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHL 236
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRK----AMADSQAQLGIGSVV 268
+ IS + E+L + + + ++ +EE R+ L ++ + + +G +
Sbjct: 237 TDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKM 296
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV-ADIATVLQPGDTLKVMILSHDRERG 326
G V + YG FI++ G+ GL+H S+IS + + L G ++ M+L D E+
Sbjct: 297 TGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKH 356
Query: 327 RVSLSTKKLEPTP 339
RVSLS K+ + P
Sbjct: 357 RVSLSIKQCQQNP 369
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRL 247
++ G + G KGG+ + +R F+P S + + + GK++ K +++D++++ +
Sbjct: 108 ILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNV 167
Query: 248 VLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
V+S R + + + L GSV+ G V+++ YGAF+D+GGI+GLLH++ ++
Sbjct: 168 VVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWR 227
Query: 300 RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL--EPTPGDMIRNPK 347
RV + VL+ G ++ +L D+E+ RVSL K+L +P G R P+
Sbjct: 228 RVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQ 277
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 127/240 (52%), Gaps = 16/240 (6%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-M 171
+G L + + A+LP + ++ V++ G + EF +I ++ +++V+S R +
Sbjct: 118 KGGLTVMISSIRAFLP---GSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAV 174
Query: 172 IQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAE 226
++ L ER L++ E V+KG V G ++ G+ G + + ++ K +E
Sbjct: 175 LEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSE 234
Query: 227 EL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAF 281
L +G+++ K ++ D+E+ R+ L ++ D + L G+ + G V +L YGAF
Sbjct: 235 VLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAF 294
Query: 282 IDI-GGINGLLHVSQISH-DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
++I GI GL+HVS++ ++ + V+Q GD ++VMIL D R R+SL K+ + P
Sbjct: 295 VEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANP 354
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
GT++ G V + GA V+I + E K+V + +V G + E +I+
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTN-KNVHPSKVVQLGDEVEVMILEI 336
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV-VAEVEGLRGFVPFS 217
+E + L ++ Q WE ++ + G V GV V G+ G V S
Sbjct: 337 DEGRRRISLGMKQCQAN-PWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLVHLS 395
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVV 268
+S + EE + G+++ + +D E+ R+ L ++ D GS+V
Sbjct: 396 DLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVNDKGSLV 455
Query: 269 IGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGR 327
G+V+S+ GA I + + G L S+ + DRV D+ T L+ GD ++ +I++ DR+
Sbjct: 456 KGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRS 515
Query: 328 VSLSTK 333
+ LS K
Sbjct: 516 IKLSVK 521
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99)
GN=rpsA PE=3 SV=1
Length = 552
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 9/167 (5%)
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
E+ +++GK+VG NKGG + E +G+ F+ S S K+ A + GK + + VD+E
Sbjct: 115 ENAIIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHI-GKRIKACIIRVDKENHS 173
Query: 247 LVLSNRKAM-ADSQAQLGIGSV-------VIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+ +S ++ + + QL I V+G V+ + P+G F+ GI+GL+H S+ISH
Sbjct: 174 INISRKRFFEVNDKRQLEISKELLEATEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH 233
Query: 299 DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
+ + GD + V +++D E+ R+SLS K P + I++
Sbjct: 234 KGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQD 280
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 44/273 (16%)
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFV 214
I +E L LS++ E WE + +K V GV ++ + GF+
Sbjct: 254 IAYDEEKRRLSLSIKAT-IEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFL 312
Query: 215 PFSQISSKSTAEE-----LLGKDLPLKFVEVDEEQSRL-----VLSNRK-AMADSQAQLG 263
S+IS +G+++ +K +++D + RL L+NR + +S+ Q
Sbjct: 313 HVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ-- 370
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323
+G +V G V +L +GAF+++GG++GLLH D+ + GD +KV IL ++
Sbjct: 371 VGDIVEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINK 430
Query: 324 ERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFR-QRIAQAEAMARADMLRFQPES 382
+ ++SLS K L +P EE AQ + + Q + ++ D
Sbjct: 431 KDKKISLSAKHLVTSP-------------TEEFAQKHKTDSVIQGKVVSIKDF------- 470
Query: 383 GLTLNSDGI--------LGPLSPDLPADGLDLT 407
G+ +++DGI L PL D G ++T
Sbjct: 471 GVFIHADGIDVLIKNEDLNPLKKDEIKIGQEIT 503
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 9/167 (5%)
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
E+ +++GK+VG NKGG + E +G+ F+ S S K+ A + GK + + VD+E
Sbjct: 119 ENAIIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHI-GKRVKACIIRVDKENHS 177
Query: 247 LVLSNRKAM-ADSQAQLGIGSV-------VIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+ +S ++ + + QL + V+G V+ + P+G F++ GI GL+H S+ISH
Sbjct: 178 INISRKRFFEVNDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH 237
Query: 299 DRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
+ + GD + V +++D E+ R+SLS K P + I++
Sbjct: 238 KGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQD 284
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 43/251 (17%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQISSKSTAEE-----LLGK 231
WE + +K V GV ++ + GF+ S+IS +G+
Sbjct: 279 WEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQ 338
Query: 232 DLPLKFVEVDEEQSRL-----VLSNRK-AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIG 285
++ +K +++D + RL L+NR + +S+ Q +G V+ G V +L +GAF+++G
Sbjct: 339 EIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDVLEGKVATLTDFGAFLNLG 396
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
G++GLLH D+ + GD +KV IL +++ ++SLS K L +P
Sbjct: 397 GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSP------ 450
Query: 346 PKLVFEKAEEMAQTFR-QRIAQAEAMARADMLRFQPESGLTLNSDGI--------LGPLS 396
EE AQ + + Q + ++ D G+ +N+DGI L PL
Sbjct: 451 -------TEEFAQKHKTDSVIQGKVVSIKDF-------GVFINADGIDVLIKNEDLNPLK 496
Query: 397 PDLPADGLDLT 407
D G ++T
Sbjct: 497 KDEIKIGQEIT 507
>sp|Q8RI52|ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=ispH PE=3 SV=1
Length = 827
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 19/280 (6%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY-LPTQEACI 134
M V+ EF LE++ N E +V+G + D + +D+ + +A + T E
Sbjct: 287 MSNVNENQNEFSLMLEEFLPNQE--KRVEGVIESMDQNFSYLDVPGERTAVRVRTDELKD 344
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+K+ E ++ GL EE ++ + + S R I+ E WE+ ++ K
Sbjct: 345 YKVGDTVEV-LITGLSEE------DDDQEYITASRRKIEVEKNWEKIEDSFKNKTILDAK 397
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV-----DEEQSRLVL 249
V KGG + E GF+P S + E++ GK + + ++ D++ ++
Sbjct: 398 VTKKIKGGYLVEAFLYPGFLPNSLSEISDSEEKVNGKKIQVIVKDIKMDPKDKKNRKITY 457
Query: 250 SNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
S + Q A L +G +V V + +G +DI + G +H+S++S R+ ++
Sbjct: 458 SVKDIRLAEQEKEFAGLAVGQIVDCVVTEVLDFGLAVDINTLKGFIHISEVSWKRLDKLS 517
Query: 306 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 345
+ GD +K +++S D + V LS KKLE P + N
Sbjct: 518 DNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWATVAN 557
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 202 GVVAEVEGLRGFVPFSQISSKS----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G+ ++ L+GF+ S++S K + +G + V +DE + + LS +K D
Sbjct: 491 GLAVDINTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEED 550
Query: 258 SQA----QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPG 311
A + + + G V + PYGAF++I G+ GL+H+S S + ++A ++
Sbjct: 551 PWATVANEFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKER 610
Query: 312 DTLKVMILSHDRERGRVSLSTKKLEPTPGD 341
+ +KV I E ++ L K+L P +
Sbjct: 611 EKIKVRITDLHPEDRKLKLGIKQLVANPWE 640
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQISSKSTAEEL----LGKD 232
WE + + D V+KGKVV G+ E+ +G+ FV S + EE+ +G +
Sbjct: 639 WETAEKDFAIDTVIKGKVVEVKPFGIFVEIADGIDAFVHSSDYNW--VGEEIPKFEIGNE 696
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQA-----------QLGIGSVVIGTVQSLKPYGAF 281
+ LK E+D L+N+K +A + +G+ V ++++ +G F
Sbjct: 697 VELKITELD-------LNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVADFGLF 749
Query: 282 ID-IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLS 331
I+ I GI+G + S + + +I GD +K ++ ++E ++ LS
Sbjct: 750 IELIKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKAQVVEVNKETQKIKLS 800
>sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial
OS=Arabidopsis thaliana GN=PNP2 PE=2 SV=1
Length = 991
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGIN 288
+ +D +V N+ M +Q Q L +G V GTV S+K YGAF++ GG
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702
Query: 289 GLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
GLLH+S++SH+ V+ ++ VL G + M + D RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETDV-RGNIKLSRKALLPKP 752
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,079,604
Number of Sequences: 539616
Number of extensions: 5853655
Number of successful extensions: 21834
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 20283
Number of HSP's gapped (non-prelim): 1185
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)