Query 015066
Match_columns 414
No_of_seqs 389 out of 2307
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 2.6E-34 9E-39 278.1 28.1 209 98-341 5-223 (285)
2 3go5_A Multidomain protein wit 99.9 3.6E-21 1.2E-25 186.1 18.0 148 96-254 66-217 (285)
3 2khi_A 30S ribosomal protein S 99.8 1.9E-18 6.4E-23 145.4 10.1 96 250-345 12-113 (115)
4 1kl9_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 158.1 7.8 84 262-345 13-99 (182)
5 2cqo_A Nucleolar protein of 40 99.7 2.7E-18 9.4E-23 145.2 7.0 86 260-345 18-107 (119)
6 2eqs_A ATP-dependent RNA helic 99.7 7.7E-18 2.6E-22 138.9 9.5 84 260-345 8-96 (103)
7 2a19_A EIF-2- alpha, eukaryoti 99.7 4.2E-18 1.4E-22 153.4 7.9 84 263-346 14-100 (175)
8 1luz_A Protein K3, protein K2; 99.7 8.7E-18 3E-22 134.6 7.1 76 261-338 8-87 (88)
9 2k4k_A GSP13, general stress p 99.7 2E-17 7E-22 142.0 8.6 82 260-341 3-85 (130)
10 2khj_A 30S ribosomal protein S 99.7 4.5E-17 1.5E-21 135.6 7.4 89 249-337 12-105 (109)
11 2k52_A Uncharacterized protein 99.7 2.7E-16 9.3E-21 123.6 10.5 73 261-337 2-75 (80)
12 3aev_A Translation initiation 99.6 1.2E-15 4E-20 146.6 8.9 82 262-343 9-93 (275)
13 1kl9_A Eukaryotic translation 99.6 9.4E-18 3.2E-22 151.8 -5.4 122 97-222 13-138 (182)
14 1q8k_A Eukaryotic translation 99.6 1E-15 3.6E-20 148.9 7.3 83 261-343 10-95 (308)
15 3cdi_A Polynucleotide phosphor 99.5 3.8E-16 1.3E-20 167.6 0.0 88 260-348 623-711 (723)
16 3cw2_C Translation initiation 99.5 1E-15 3.4E-20 146.6 2.7 87 260-346 7-96 (266)
17 1e3p_A Guanosine pentaphosphat 99.5 2.1E-16 7.3E-21 170.2 -5.8 127 193-343 617-750 (757)
18 4aid_A Polyribonucleotide nucl 99.5 1.4E-15 4.8E-20 162.7 0.0 87 260-347 633-720 (726)
19 2a19_A EIF-2- alpha, eukaryoti 99.4 1.8E-14 6.3E-19 129.5 2.7 104 98-203 14-120 (175)
20 1wi5_A RRP5 protein homolog; S 99.4 9.8E-14 3.4E-18 117.2 5.1 79 259-337 16-97 (119)
21 1go3_E DNA-directed RNA polyme 99.4 1.5E-12 5E-17 118.4 9.2 79 261-339 78-172 (187)
22 2khj_A 30S ribosomal protein S 99.4 2E-12 7E-17 107.3 9.2 85 88-173 20-104 (109)
23 1q8k_A Eukaryotic translation 99.3 1.6E-13 5.6E-18 133.5 1.9 109 96-206 10-121 (308)
24 3psi_A Transcription elongatio 99.3 1.1E-12 3.9E-17 147.0 8.2 77 260-336 898-976 (1219)
25 2khi_A 30S ribosomal protein S 99.3 1.8E-12 6.1E-17 108.7 6.8 92 89-182 20-112 (115)
26 4aid_A Polyribonucleotide nucl 99.3 2.7E-13 9.1E-18 145.1 1.2 155 13-181 556-716 (726)
27 4ayb_E DNA-directed RNA polyme 99.3 4.4E-12 1.5E-16 114.6 8.8 75 261-335 78-167 (180)
28 2k52_A Uncharacterized protein 99.3 1.8E-11 6E-16 95.9 10.7 74 96-174 2-75 (80)
29 2b8k_G B16, DNA-directed RNA p 99.3 3.6E-12 1.2E-16 118.2 7.8 108 262-371 81-201 (215)
30 2nn6_I 3'-5' exoribonuclease C 99.3 4.4E-12 1.5E-16 117.2 8.3 76 261-336 78-164 (209)
31 3bzc_A TEX; helix-turn-helix, 99.3 1.2E-12 4.1E-17 141.4 3.7 77 260-336 650-727 (785)
32 2k4k_A GSP13, general stress p 99.3 2.2E-11 7.5E-16 104.3 10.6 78 96-174 4-81 (130)
33 3psf_A Transcription elongatio 99.2 5.8E-13 2E-17 147.3 0.0 78 260-337 901-980 (1030)
34 1luz_A Protein K3, protein K2; 99.2 1.8E-11 6.3E-16 97.6 7.9 75 96-173 8-85 (88)
35 3psi_A Transcription elongatio 99.2 5E-11 1.7E-15 133.8 13.5 120 56-176 858-979 (1219)
36 3aev_A Translation initiation 99.2 2.4E-12 8.3E-17 123.5 2.5 106 97-204 9-117 (275)
37 2cqo_A Nucleolar protein of 40 99.2 2.1E-11 7.3E-16 102.8 6.6 90 91-182 14-106 (119)
38 3m7n_A Putative uncharacterize 99.2 4.2E-11 1.5E-15 108.0 8.3 70 261-336 55-135 (179)
39 3cdi_A Polynucleotide phosphor 99.2 2.4E-12 8.3E-17 138.3 -0.2 152 16-181 549-706 (723)
40 2eqs_A ATP-dependent RNA helic 99.2 9E-11 3.1E-15 96.4 9.2 82 95-180 8-93 (103)
41 1y14_B B16, RPB7, DNA-directed 99.1 7.7E-11 2.6E-15 105.6 8.6 72 262-334 81-165 (171)
42 2c35_B Human RPB7, DNA-directe 99.1 7.3E-11 2.5E-15 105.8 8.2 72 262-334 79-165 (172)
43 3psf_A Transcription elongatio 99.1 1.8E-11 6.1E-16 135.5 4.3 123 56-179 861-985 (1030)
44 1e3p_A Guanosine pentaphosphat 99.0 3.6E-12 1.2E-16 137.4 -6.6 152 19-184 590-753 (757)
45 3h0g_G DNA-directed RNA polyme 99.0 9.8E-11 3.4E-15 105.0 3.2 73 261-334 81-166 (172)
46 2je6_I RRP4, exosome complex R 99.0 3.6E-10 1.2E-14 107.1 7.1 74 261-335 71-148 (251)
47 1hh2_P NUSA, N utilization sub 99.0 1.1E-09 3.6E-14 107.9 9.8 103 224-333 84-199 (344)
48 3bzc_A TEX; helix-turn-helix, 99.0 1.5E-10 5E-15 125.3 3.8 112 57-173 616-727 (785)
49 3cw2_C Translation initiation 99.0 1.7E-10 5.8E-15 110.3 3.3 102 96-199 8-111 (266)
50 2z0s_A Probable exosome comple 99.0 4.2E-10 1.4E-14 105.8 5.8 75 261-336 63-142 (235)
51 2bh8_A 1B11; transcription, mo 99.0 8.6E-10 2.9E-14 90.2 6.6 81 187-301 13-99 (101)
52 1wi5_A RRP5 protein homolog; S 98.9 2.2E-09 7.6E-14 90.3 7.8 78 96-174 18-97 (119)
53 2ba0_A Archeal exosome RNA bin 98.9 2.3E-09 7.8E-14 100.3 8.5 75 261-336 54-130 (229)
54 2nn6_I 3'-5' exoribonuclease C 98.8 1.7E-08 6E-13 93.0 9.0 78 95-173 77-164 (209)
55 1go3_E DNA-directed RNA polyme 98.8 3E-08 1E-12 89.8 10.1 77 95-173 77-169 (187)
56 1hh2_P NUSA, N utilization sub 98.7 1.4E-08 4.9E-13 99.8 8.0 78 97-182 132-211 (344)
57 3m7n_A Putative uncharacterize 98.6 6.2E-08 2.1E-12 87.2 7.9 71 95-172 54-134 (179)
58 2je6_I RRP4, exosome complex R 98.6 1E-07 3.5E-12 90.2 8.6 75 95-171 70-147 (251)
59 2ba0_A Archeal exosome RNA bin 98.6 2.1E-07 7.2E-12 86.9 9.9 75 95-171 53-128 (229)
60 2id0_A Exoribonuclease 2; RNAs 98.6 1.2E-07 4.1E-12 101.3 9.2 72 261-332 555-642 (644)
61 3ayh_B DNA-directed RNA polyme 98.5 1.3E-07 4.3E-12 86.9 7.9 63 262-324 79-160 (203)
62 4ayb_E DNA-directed RNA polyme 98.5 3.1E-07 1E-11 82.6 9.8 77 95-173 77-168 (180)
63 2z0s_A Probable exosome comple 98.5 1.8E-07 6E-12 87.8 8.0 74 95-170 62-139 (235)
64 2bx2_L Ribonuclease E, RNAse E 98.4 3E-07 1E-11 95.0 7.6 74 260-333 41-126 (517)
65 1y14_B B16, RPB7, DNA-directed 98.4 1E-06 3.5E-11 78.6 9.7 67 95-163 79-155 (171)
66 2asb_A Transcription elongatio 98.4 1E-06 3.4E-11 82.6 9.8 79 96-181 4-91 (251)
67 2b8k_G B16, DNA-directed RNA p 98.4 9.3E-07 3.2E-11 81.7 8.9 76 95-172 79-166 (215)
68 2ckz_B C25, DNA-directed RNA p 98.3 6E-07 2E-11 83.2 6.8 64 262-325 79-157 (218)
69 1k0r_A NUSA; two component arr 98.3 1.8E-06 6.3E-11 85.1 10.0 72 96-174 127-207 (366)
70 2c35_B Human RPB7, DNA-directe 98.3 1.7E-06 5.9E-11 77.1 8.4 76 95-171 77-165 (172)
71 2vnu_D Exosome complex exonucl 98.3 6.8E-07 2.3E-11 97.1 6.8 68 266-333 671-760 (760)
72 2wp8_J Exosome complex exonucl 98.2 8.5E-07 2.9E-11 98.5 6.0 69 265-333 887-977 (977)
73 3h0g_G DNA-directed RNA polyme 98.2 7.6E-07 2.6E-11 79.5 3.9 67 186-253 83-166 (172)
74 2nn6_H Exosome complex exonucl 98.2 1E-06 3.5E-11 85.5 5.0 73 261-334 92-175 (308)
75 1k0r_A NUSA; two component arr 98.2 2.6E-06 8.9E-11 84.1 7.1 71 260-336 124-204 (366)
76 2bh8_A 1B11; transcription, mo 98.1 6.4E-06 2.2E-10 67.0 6.5 83 97-223 11-98 (101)
77 2ja9_A Exosome complex exonucl 98.0 1.1E-05 3.7E-10 72.1 6.9 68 262-331 5-74 (175)
78 2asb_A Transcription elongatio 98.0 1.9E-05 6.4E-10 74.0 8.4 66 263-334 6-81 (251)
79 2bx2_L Ribonuclease E, RNAse E 97.8 3.9E-05 1.3E-09 79.3 8.9 74 96-170 42-126 (517)
80 2id0_A Exoribonuclease 2; RNAs 97.6 0.00021 7.2E-09 76.2 11.0 73 96-169 555-642 (644)
81 2ja9_A Exosome complex exonucl 97.5 0.0003 1E-08 62.7 8.9 72 95-169 3-75 (175)
82 2nn6_H Exosome complex exonucl 97.5 0.00014 4.8E-09 70.5 6.7 75 95-171 91-175 (308)
83 2ckz_B C25, DNA-directed RNA p 97.3 0.00068 2.3E-08 62.6 8.1 69 96-165 78-160 (218)
84 3ayh_B DNA-directed RNA polyme 97.2 0.00072 2.5E-08 61.7 8.1 66 96-163 78-162 (203)
85 2vnu_D Exosome complex exonucl 97.1 0.00088 3E-08 72.8 8.5 69 101-170 671-760 (760)
86 2nn6_G Exosome complex exonucl 97.0 0.0011 3.7E-08 63.7 6.6 70 261-332 124-194 (289)
87 2wp8_J Exosome complex exonucl 96.9 0.0013 4.5E-08 73.1 7.5 70 100-170 887-977 (977)
88 2nn6_G Exosome complex exonucl 96.5 0.0051 1.7E-07 59.0 7.7 73 95-170 123-195 (289)
89 2r7d_A Ribonuclease II family 94.7 0.045 1.5E-06 56.1 6.7 59 263-332 402-460 (469)
90 2rf4_A DNA-directed RNA polyme 93.2 0.31 1.1E-05 44.5 8.7 69 96-164 126-205 (214)
91 2rf4_A DNA-directed RNA polyme 90.5 0.77 2.7E-05 41.8 8.1 69 261-329 126-207 (214)
92 3d0f_A Penicillin-binding 1 tr 88.4 0.94 3.2E-05 36.3 6.2 56 262-317 31-93 (106)
93 3d0f_A Penicillin-binding 1 tr 87.2 3.5 0.00012 32.8 9.0 57 97-154 31-93 (106)
94 1jjg_A M156R; beta barrel, S1 86.9 1.2 4E-05 34.8 5.4 62 260-323 28-93 (102)
95 1wfq_A UNR protein; beta-barre 85.5 8.1 0.00028 29.9 9.9 69 262-337 13-85 (89)
96 2r7d_A Ribonuclease II family 83.9 3 0.0001 42.4 8.6 94 58-169 367-460 (469)
97 3h8z_A FragIle X mental retard 82.1 2.7 9.1E-05 35.1 6.1 56 264-319 14-72 (128)
98 2k5n_A Putative cold-shock pro 81.3 15 0.0005 27.4 9.5 60 268-336 3-66 (74)
99 1h95_A CSD, Y-box binding prot 78.4 13 0.00046 27.9 8.6 56 265-320 6-65 (79)
100 3i4o_A Translation initiation 78.2 2.5 8.4E-05 32.2 4.3 61 267-332 15-78 (79)
101 3i4o_A Translation initiation 77.4 3.9 0.00013 31.1 5.2 62 189-250 14-77 (79)
102 2ytx_A Cold shock domain-conta 77.3 5.1 0.00018 31.6 6.1 74 265-346 16-94 (97)
103 3h8z_A FragIle X mental retard 76.5 6.1 0.00021 32.9 6.6 86 98-209 13-100 (128)
104 1wfq_A UNR protein; beta-barre 76.3 16 0.00054 28.2 8.6 56 96-157 12-68 (89)
105 2yty_A Cold shock domain-conta 74.8 4.2 0.00014 31.5 4.9 51 187-238 15-67 (88)
106 3aqq_A Calcium-regulated heat 74.4 12 0.00042 31.8 8.1 71 263-339 58-133 (147)
107 4b9x_A TDRD1, tudor domain-con 73.4 51 0.0017 29.5 14.6 136 145-285 13-177 (226)
108 3cam_A Cold-shock domain famil 72.6 21 0.00073 25.8 8.1 50 103-157 2-54 (67)
109 3i2z_B RNA chaperone, negative 71.4 24 0.0008 25.9 8.2 51 102-157 5-58 (71)
110 2yty_A Cold shock domain-conta 68.6 11 0.00038 29.0 6.0 53 99-157 15-68 (88)
111 1d7q_A Translation initiation 67.7 12 0.00042 31.6 6.5 63 266-333 31-95 (143)
112 3a0j_A Cold shock protein; OB- 67.7 22 0.00074 26.3 7.3 50 268-321 2-54 (73)
113 2kcm_A Cold shock domain famil 65.1 35 0.0012 25.3 8.0 62 269-336 2-67 (74)
114 3cam_A Cold-shock domain famil 64.6 37 0.0013 24.5 8.5 50 268-321 2-55 (67)
115 1h95_A CSD, Y-box binding prot 64.5 23 0.0008 26.5 7.0 56 100-157 6-65 (79)
116 4b9w_A TDRD1, tudor domain-con 64.5 73 0.0025 27.8 14.8 135 145-284 13-176 (201)
117 2k5n_A Putative cold-shock pro 63.7 42 0.0014 24.8 8.7 53 102-164 2-57 (74)
118 3i2z_B RNA chaperone, negative 63.6 17 0.00058 26.7 5.9 50 190-239 5-58 (71)
119 3aqq_A Calcium-regulated heat 62.3 26 0.00089 29.7 7.6 53 99-158 59-114 (147)
120 1c9o_A CSPB, cold-shock protei 61.1 24 0.00083 25.4 6.3 49 191-239 2-53 (66)
121 2dgy_A MGC11102 protein; EIF-1 59.2 14 0.00048 29.9 5.1 66 262-333 12-80 (111)
122 1jjg_A M156R; beta barrel, S1 58.5 40 0.0014 26.2 7.2 63 95-160 28-93 (102)
123 3ts2_A Protein LIN-28 homolog 54.9 33 0.0011 29.0 7.1 52 189-240 8-70 (148)
124 1c9o_A CSPB, cold-shock protei 54.8 56 0.0019 23.4 7.8 50 103-157 2-53 (66)
125 1g6p_A Cold shock protein TMCS 54.7 42 0.0014 24.1 6.7 49 104-157 2-52 (66)
126 2kcm_A Cold shock domain famil 54.5 58 0.002 24.0 7.6 54 104-164 2-58 (74)
127 3ulj_A LIN28B, DNA-binding pro 53.9 73 0.0025 24.5 8.6 52 189-240 7-69 (90)
128 3a0j_A Cold shock protein; OB- 51.4 69 0.0023 23.4 8.4 50 103-157 2-53 (73)
129 2ytx_A Cold shock domain-conta 48.2 30 0.001 27.0 5.3 52 99-156 15-67 (97)
130 3ulj_A LIN28B, DNA-binding pro 48.1 55 0.0019 25.2 6.7 52 101-157 7-68 (90)
131 2ytv_A Cold shock domain-conta 45.7 15 0.0005 27.7 3.0 50 101-157 7-58 (79)
132 1g6p_A Cold shock protein TMCS 44.4 16 0.00056 26.3 3.0 48 192-239 2-52 (66)
133 3ts2_A Protein LIN-28 homolog 44.0 62 0.0021 27.2 7.1 53 101-158 8-70 (148)
134 2lss_A Cold shock-like protein 48.7 5.2 0.00018 29.5 0.0 50 190-239 4-57 (70)
135 4hcz_A PHD finger protein 1; p 42.5 40 0.0014 23.9 4.6 36 263-298 15-53 (58)
136 2l55_A SILB,silver efflux prot 40.8 68 0.0023 24.2 6.1 63 103-168 6-69 (82)
137 1jt8_A EIF-1A, probable transl 39.6 7.2 0.00025 31.1 0.4 62 265-331 19-83 (102)
138 1x65_A UNR protein; cell-free 39.5 11 0.00037 29.2 1.4 49 189-239 7-57 (89)
139 2ytv_A Cold shock domain-conta 38.7 14 0.00049 27.8 1.9 49 189-239 7-58 (79)
140 1gut_A Mopii, molybdate bindin 38.0 54 0.0018 22.9 5.0 47 101-155 7-59 (68)
141 1x65_A UNR protein; cell-free 38.0 23 0.00078 27.4 3.0 50 101-157 7-57 (89)
142 1fr3_A MOP, molybdate/tungstat 35.5 94 0.0032 21.3 6.0 49 266-319 7-59 (67)
143 2eqj_A Metal-response element- 34.0 75 0.0025 23.1 5.0 36 262-297 24-62 (66)
144 1d7q_A Translation initiation 32.3 1.6E+02 0.0056 24.7 7.7 63 190-253 32-96 (143)
145 1yvc_A MRR5; structure, autost 32.1 1.4E+02 0.0048 21.4 6.7 48 96-159 12-60 (70)
146 2vb2_X Copper protein, cation 31.9 1.1E+02 0.0036 23.4 6.0 45 232-276 17-76 (88)
147 2qcp_X Cation efflux system pr 31.8 1.1E+02 0.0038 22.8 6.0 45 232-276 9-68 (80)
148 2qcp_X Cation efflux system pr 31.7 1.5E+02 0.0051 22.0 6.7 57 102-158 9-67 (80)
149 2jk8_A BEPA, putative cell fil 31.6 60 0.0021 30.6 5.5 54 261-318 247-300 (302)
150 2vb2_X Copper protein, cation 30.7 1.5E+02 0.005 22.5 6.7 56 102-158 17-75 (88)
151 1cuk_A RUVA protein; DNA repai 28.3 1E+02 0.0035 27.3 6.1 54 190-247 4-60 (203)
152 4b9x_A TDRD1, tudor domain-con 27.6 3.2E+02 0.011 24.1 10.1 96 99-207 79-176 (226)
153 1yez_A MM1357; MAR30, autostru 26.5 1.7E+02 0.0059 20.6 7.4 48 96-159 10-58 (68)
154 2jpp_A Translational repressor 26.2 49 0.0017 24.4 2.9 30 304-335 8-37 (70)
155 2bti_A Carbon storage regulato 25.8 46 0.0016 24.0 2.7 31 304-336 10-40 (63)
156 1ah9_A IF1, initiation factor 24.8 1E+02 0.0035 22.2 4.6 58 190-247 7-66 (71)
157 4hcz_A PHD finger protein 1; p 24.4 1.7E+02 0.0057 20.7 5.2 36 98-133 15-52 (58)
158 2e5p_A Protein PHF1, PHD finge 23.7 1.4E+02 0.0048 21.7 4.9 36 264-299 22-60 (68)
159 1cuk_A RUVA protein; DNA repai 23.1 3.8E+02 0.013 23.5 9.5 51 102-161 4-55 (203)
160 1vpz_A Carbon storage regulato 22.9 64 0.0022 24.0 3.0 31 303-335 19-49 (73)
161 2oqk_A Putative translation in 22.7 98 0.0034 24.9 4.5 61 262-328 29-91 (117)
162 2dgy_A MGC11102 protein; EIF-1 22.6 2.8E+02 0.0095 22.1 7.1 64 190-254 16-82 (111)
163 2wac_A CG7008-PA; unknown func 21.8 3.2E+02 0.011 23.5 8.3 94 188-284 66-163 (218)
164 2xk0_A Polycomb protein PCL; t 21.6 1.2E+02 0.004 22.2 4.2 34 265-298 29-63 (69)
165 1we8_A Tudor and KH domain con 21.1 11 0.00038 29.8 -1.6 42 20-72 8-49 (104)
166 2lj0_A Sorbin and SH3 domain-c 20.8 1.3E+02 0.0046 21.2 4.5 36 95-132 23-60 (65)
167 2oqk_A Putative translation in 20.0 1.1E+02 0.0038 24.6 4.3 61 187-249 31-93 (117)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.6e-34 Score=278.10 Aligned_cols=209 Identities=16% Similarity=0.102 Sum_probs=181.3
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhhHH
Q 015066 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177 (414)
Q Consensus 98 ~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~~~ 177 (414)
..|++++|+|++++++|+||+++ +.+|+||.+|++. ++|++++|.|+. +.++++++|.+.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~-----------~vGdevev~v~~--d~~~r~iat~~~p~---- 66 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH-----------TVGDTVKGFAYT--DMKQKLRLTTLEVT---- 66 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC-----------CTTSEEEEEEEE--CTTSCEEEECSCCC----
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc-----------ccCCEEEEEEEE--CCCCCEEEeccccc----
Confidence 57999999999999999999997 6999999999841 689999999974 45778888876532
Q ss_pred HHHhhhcccCCeEEEEEEEEEe-cCcEEEEECC--EEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEeehhhh
Q 015066 178 WERCRQLQSEDVVVKGKVVGAN-KGGVVAEVEG--LRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254 (414)
Q Consensus 178 ~~~l~~~~~~g~iv~G~V~~v~-~~G~~V~i~g--i~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~ 254 (414)
.+.|++++|+|++++ ++|+||++|. .+||||+|+++|.......+||++.++ +++|+ ++||.+|+|+.
T Consensus 67 -------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~ 137 (285)
T 3go5_A 67 -------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIR-LEVDK-KDRIWGLLAYQ 137 (285)
T ss_dssp -------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEE-EEECT-TSCEEEEECCH
T ss_pred -------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEE-EEECC-CCcEEEEehhh
Confidence 367889999999999 7999999984 899999999998755445689999765 79998 78999999865
Q ss_pred -hhhHH----hhccccEEEEEEEEEEeeceEEE-EEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCe
Q 015066 255 -MADSQ----AQLGIGSVVIGTVQSLKPYGAFI-DIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGR 327 (414)
Q Consensus 255 -l~~~~----~~l~~G~iv~g~V~~i~~~G~fV-~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~r 327 (414)
..+.+ ..+++|++|+|+|+++++||+|| .++ |+.||||+||++. .+++||+|+|+|+++|++++|
T Consensus 138 ~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~k 209 (285)
T 3go5_A 138 EDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGFREVDRT 209 (285)
T ss_dssp HHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEEETTTTE
T ss_pred hhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEEECCCCe
Confidence 23333 57899999999999999999999 996 7999999999973 589999999999999999999
Q ss_pred EEEEEeeCCCCCCc
Q 015066 328 VSLSTKKLEPTPGD 341 (414)
Q Consensus 328 i~LS~K~~~~~p~~ 341 (414)
|+||+|++..++++
T Consensus 210 I~LSlk~~~~~~~~ 223 (285)
T 3go5_A 210 LNLSLKPRSFEMLE 223 (285)
T ss_dssp EEEECSCCCCCCCC
T ss_pred EEEEeChhhhhccc
Confidence 99999999877664
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.87 E-value=3.6e-21 Score=186.10 Aligned_cols=148 Identities=16% Similarity=0.038 Sum_probs=129.9
Q ss_pred cCCCCCEEEEEEEEEe-CCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehh
Q 015066 96 NSELGTKVKGTVFCTD-NRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~-~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~ 173 (414)
.+++|+++.|+|++++ ++|+||++|. +.+||+|.+|+++.... .+++|+++.+. +++|+ ++|+.+|+|...
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~-----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~ 138 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL-----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQE 138 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG-----SCCTTCEEEEE-EEECT-TSCEEEEECCHH
T ss_pred cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc-----ccCCCCEEEEE-EEECC-CCcEEEEehhhh
Confidence 4689999999999999 7999999997 68999999999864322 26899999655 68887 789999999876
Q ss_pred hhHHHHHhhhcccCCeEEEEEEEEEecCcEEE-EEC-CEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEeeh
Q 015066 174 YELAWERCRQLQSEDVVVKGKVVGANKGGVVA-EVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251 (414)
Q Consensus 174 ~~~~~~~l~~~~~~g~iv~G~V~~v~~~G~~V-~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS~ 251 (414)
....|......+..|+.|+|+|.+++++|+|| .++ |+.||||.|+++.... +||+|+++|+++|++++||.||+
T Consensus 139 ~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~~l~----~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 139 DFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYAEPR----LGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp HHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSSCCC----TTCEEEEEEEEEETTTTEEEEEC
T ss_pred hcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccccCC----CCCEEEEEEEEEECCCCeEEEEe
Confidence 66789887777788999999999999999999 996 8999999999986433 89999999999999899999999
Q ss_pred hhh
Q 015066 252 RKA 254 (414)
Q Consensus 252 K~~ 254 (414)
|+.
T Consensus 215 k~~ 217 (285)
T 3go5_A 215 KPR 217 (285)
T ss_dssp SCC
T ss_pred Chh
Confidence 985
No 3
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.76 E-value=1.9e-18 Score=145.44 Aligned_cols=96 Identities=30% Similarity=0.518 Sum_probs=80.9
Q ss_pred ehhhhhhhHH----hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcc-cccCcccccCCCCEEEEEEEEEeC
Q 015066 250 SNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDR 323 (414)
Q Consensus 250 S~K~~l~~~~----~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~-~~~~~~~~~~~G~~V~vkVl~id~ 323 (414)
|+|+...+.+ .++++|++|.|+|+++++||+||+|+ |++||||+|++++. ++.++.+.|++||.|+|+|+++|.
T Consensus 12 ~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 12 SGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp ---------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEET
T ss_pred chhhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEEC
Confidence 4555544443 46899999999999999999999998 89999999999984 788899999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCcccCC
Q 015066 324 ERGRVSLSTKKLEPTPGDMIRN 345 (414)
Q Consensus 324 e~~ri~LS~K~~~~~p~~~~~~ 345 (414)
++++|.||+|++.++||+.+..
T Consensus 92 ~~~rI~lslk~~~~~p~~~~~~ 113 (115)
T 2khi_A 92 ERRRISLGLKQCKANPWQQFAE 113 (115)
T ss_dssp TTTEEEECCCCCCSSCCCCCCC
T ss_pred CCCEEEEEEEecCcCHHHHHHh
Confidence 9999999999999999987654
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.75 E-value=1.1e-18 Score=158.05 Aligned_cols=84 Identities=24% Similarity=0.505 Sum_probs=67.3
Q ss_pred ccccEEEEEEEEEEeeceEEEEE---CCEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCC
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDI---GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 338 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l---~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~ 338 (414)
+++|++|.|+|++|++||+||+| +|++||||+|+|++.++.++.+.|++||.|+|+|+++|+++++|+||+|++.++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 47999999999999999999999 489999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCC
Q 015066 339 PGDMIRN 345 (414)
Q Consensus 339 p~~~~~~ 345 (414)
||+.+..
T Consensus 93 p~~~~~~ 99 (182)
T 1kl9_A 93 EAIKCED 99 (182)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 9875543
No 5
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=145.20 Aligned_cols=86 Identities=28% Similarity=0.440 Sum_probs=80.0
Q ss_pred hhccccEEEEEEEEEEeeceEEEEECC--EEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCC--CeEEEEEeeC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIGG--INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER--GRVSLSTKKL 335 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~g--v~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~--~ri~LS~K~~ 335 (414)
..+++|++|.|+|++|++||+||+|.| .+||||+|++++.++.++.+.|++||.|+|+|+++|+++ ++|.||+|++
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~ 97 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVV 97 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTB
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeec
Confidence 468899999999999999999999976 599999999999999999999999999999999999864 6999999999
Q ss_pred CCCCCcccCC
Q 015066 336 EPTPGDMIRN 345 (414)
Q Consensus 336 ~~~p~~~~~~ 345 (414)
.++||+++..
T Consensus 98 ~~~~~~~~~~ 107 (119)
T 2cqo_A 98 NQGTGKDLDP 107 (119)
T ss_dssp CSSSCCBSCT
T ss_pred ccCCccccCc
Confidence 9999998854
No 6
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=138.89 Aligned_cols=84 Identities=31% Similarity=0.577 Sum_probs=77.8
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC----CEEEEEeeccc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEee
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG----GINGLLHVSQI-SHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKK 334 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~----gv~Glvh~sel-s~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~ 334 (414)
..+++|++|.|+|++|.+||+||+|+ +++||||+|++ ++.++.++.+.|++||.|+|+|+++|+ +||.||+|+
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 46889999999999999999999998 69999999999 677888999999999999999999996 699999999
Q ss_pred CCCCCCcccCC
Q 015066 335 LEPTPGDMIRN 345 (414)
Q Consensus 335 ~~~~p~~~~~~ 345 (414)
+.++||+++..
T Consensus 86 ~~~~~~~~~~~ 96 (103)
T 2eqs_A 86 VDQETGEDLNP 96 (103)
T ss_dssp BCTTTCCBCCS
T ss_pred cccCCchhcCc
Confidence 99999998743
No 7
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.73 E-value=4.2e-18 Score=153.36 Aligned_cols=84 Identities=23% Similarity=0.457 Sum_probs=71.0
Q ss_pred cccEEEEEEEEEEeeceEEEEE---CCEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCCC
Q 015066 263 GIGSVVIGTVQSLKPYGAFIDI---GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339 (414)
Q Consensus 263 ~~G~iv~g~V~~i~~~G~fV~l---~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~p 339 (414)
++|++|.|+|++|++||+||+| +|++||||+|+|++.++.++.+.|++||.|+|+|+++|+++++|+||+|++.++|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 4899999999999999999999 5899999999999999999999999999999999999999999999999999998
Q ss_pred CcccCCc
Q 015066 340 GDMIRNP 346 (414)
Q Consensus 340 ~~~~~~~ 346 (414)
|+.+.+.
T Consensus 94 ~~~~~~~ 100 (175)
T 2a19_A 94 IIKCEEK 100 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8755443
No 8
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.71 E-value=8.7e-18 Score=134.56 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=71.8
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC---CEEEEEeec-ccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG---GINGLLHVS-QISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~---gv~Glvh~s-els~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
..++|+++.|+|+ |++||+||+|. |++||+|+| +++++++.++++.+ +||.|+|+|+++|++++||.||+|++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 4689999999999 99999999995 699999999 99999999999999 999999999999999999999999987
Q ss_pred CC
Q 015066 337 PT 338 (414)
Q Consensus 337 ~~ 338 (414)
++
T Consensus 86 ~~ 87 (88)
T 1luz_A 86 RH 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.70 E-value=2e-17 Score=142.03 Aligned_cols=82 Identities=38% Similarity=0.706 Sum_probs=78.3
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 338 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~ 338 (414)
.++++|++|.|+|++|++||+||+|+ |++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|++.++
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 36889999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 015066 339 PGD 341 (414)
Q Consensus 339 p~~ 341 (414)
|+.
T Consensus 83 p~~ 85 (130)
T 2k4k_A 83 PEK 85 (130)
T ss_dssp CCC
T ss_pred ccc
Confidence 876
No 10
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.68 E-value=4.5e-17 Score=135.62 Aligned_cols=89 Identities=28% Similarity=0.397 Sum_probs=75.5
Q ss_pred eehhhhhhhHH----hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeC
Q 015066 249 LSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDR 323 (414)
Q Consensus 249 LS~K~~l~~~~----~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~ 323 (414)
-|+|+...+++ .++++|++|.|+|+++.+||+||+|+ |++||||++++++.++.++.+.|++||.|+|+|+++|+
T Consensus 12 ~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 12 SGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91 (109)
T ss_dssp ---------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEET
T ss_pred cchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEEC
Confidence 45666655443 57899999999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeeCCC
Q 015066 324 ERGRVSLSTKKLEP 337 (414)
Q Consensus 324 e~~ri~LS~K~~~~ 337 (414)
++++|.||+|++++
T Consensus 92 ~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 92 KNRAISLSVRAKDE 105 (109)
T ss_dssp TTTEEEEETTSSSS
T ss_pred CCCEEEEEEeecCh
Confidence 88999999999865
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.67 E-value=2.7e-16 Score=123.57 Aligned_cols=73 Identities=26% Similarity=0.441 Sum_probs=68.1
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 337 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~ 337 (414)
++++|++|.|+|+++.+||+||+++ +++||+|+|++++.++ +.|++||.|+|+|+++|++++||.||+|++.+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 4789999999999999999999998 8999999999998775 78999999999999999999999999998875
No 12
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.60 E-value=1.2e-15 Score=146.61 Aligned_cols=82 Identities=23% Similarity=0.507 Sum_probs=77.7
Q ss_pred ccccEEEEEEEEEEeeceEEEEEC---CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCC
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIG---GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 338 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~---gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~ 338 (414)
+++|++|.|+|++|.+||+||+|+ |++||||+|+++++++.++.+.|++||.|.|+|+++|+++++|.||+|++.++
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 468999999999999999999995 79999999999999999999999999999999999999999999999999988
Q ss_pred CCccc
Q 015066 339 PGDMI 343 (414)
Q Consensus 339 p~~~~ 343 (414)
||...
T Consensus 89 ~~~~~ 93 (275)
T 3aev_A 89 QRKAK 93 (275)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 88644
No 13
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.60 E-value=9.4e-18 Score=151.82 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=100.3
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEe--CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhh
Q 015066 97 SELGTKVKGTVFCTDNRGALVDI--TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (414)
Q Consensus 97 l~~G~iV~G~V~~v~~~G~~Vdi--g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~ 174 (414)
+++|+++.|+|+++.++|+||++ .++.+|+||.+|+++.+..++.+. +++||.++|+|+++|.+++++.||+|....
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~-~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKL-IRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHh-cCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 48999999999999999999999 567999999999999988888887 999999999999999999999999998765
Q ss_pred hHHHHHhhhcccCCeEEEEEEEEEec-CcEEEEEC-CEEEEEeccccCCC
Q 015066 175 ELAWERCRQLQSEDVVVKGKVVGANK-GGVVAEVE-GLRGFVPFSQISSK 222 (414)
Q Consensus 175 ~~~~~~l~~~~~~g~iv~G~V~~v~~-~G~~V~i~-gi~GfIp~sels~~ 222 (414)
.+|..+.+.+..|..++|+|+++.+ +| +.+. |++|++|.++++|.
T Consensus 92 -~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~ 138 (182)
T 1kl9_A 92 -EEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFD 138 (182)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHH
T ss_pred -ChHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchh
Confidence 5799988888888899999999987 99 6775 99999999988654
No 14
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.59 E-value=1e-15 Score=148.92 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=78.2
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC---CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG---GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 337 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~---gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~ 337 (414)
.+++|++|.|+|++|.+||+||+|+ |++||||+|+++|.++.++.+.|++||.|+|+|+++|+++++|.||+|++.+
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~ 89 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP 89 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc
Confidence 3569999999999999999999995 7999999999999999999999999999999999999999999999999998
Q ss_pred CCCccc
Q 015066 338 TPGDMI 343 (414)
Q Consensus 338 ~p~~~~ 343 (414)
+||..+
T Consensus 90 ~p~~~~ 95 (308)
T 1q8k_A 90 EEAIKC 95 (308)
T ss_dssp HHHHHH
T ss_pred ChHHHH
Confidence 888654
No 15
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.55 E-value=3.8e-16 Score=167.61 Aligned_cols=88 Identities=35% Similarity=0.596 Sum_probs=0.0
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 338 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~ 338 (414)
.++++|++|.|+|++|.+||+||+|. |++||||+|+++++|+.++.+.|++||.|+|||+++|+ ++||+||+|++.++
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCC
Confidence 57899999999999999999999997 89999999999999999999999999999999999998 89999999999999
Q ss_pred CCcccCCchh
Q 015066 339 PGDMIRNPKL 348 (414)
Q Consensus 339 p~~~~~~~~~ 348 (414)
||.++.+...
T Consensus 702 ~g~~~~p~~~ 711 (723)
T 3cdi_A 702 SQPAAAPEAP 711 (723)
T ss_dssp ----------
T ss_pred CCcccCcccc
Confidence 9998744333
No 16
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.55 E-value=1e-15 Score=146.62 Aligned_cols=87 Identities=26% Similarity=0.448 Sum_probs=80.3
Q ss_pred hhccccEEEEEEEEEEeeceEEEEE---CCEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDI---GGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l---~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
..+++|++|.|+|++|.+||+||+| +|++||||+|+++++++.++.+.|++||.|.|+|+++|+++++|.||+|.+.
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 3578999999999999999999999 4799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCc
Q 015066 337 PTPGDMIRNP 346 (414)
Q Consensus 337 ~~p~~~~~~~ 346 (414)
++||..+.+.
T Consensus 87 ~~~~~~~~~~ 96 (266)
T 3cw2_C 87 DDERRKKNLQ 96 (266)
T ss_dssp TTHHHHHHHH
T ss_pred hhhHHHHHHh
Confidence 9888765443
No 17
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.51 E-value=2.1e-16 Score=170.16 Aligned_cols=127 Identities=24% Similarity=0.428 Sum_probs=51.7
Q ss_pred EEEEE--EecCcEEEEECCEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEeehhhhhhhHHhhccccEEEEE
Q 015066 193 GKVVG--ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270 (414)
Q Consensus 193 G~V~~--v~~~G~~V~i~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~~~~l~~G~iv~g 270 (414)
|++++ ..++|++|+++. +|.++.+..++..... ...++ ..+.+. ..+++|++|.|
T Consensus 617 Gk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~~~----------------a~~~i-----~~i~~p-~~~~vG~i~~G 673 (757)
T 1e3p_A 617 RQMINQIQEDTGAEITIED-DGTIYIGAADGPAAEA----------------ARATI-----NGIANP-TSPEVGERILG 673 (757)
T ss_dssp ----CTTCCCCCSCC---------CCCBSSHHHHCC-------------------------------------------C
T ss_pred ceeeehhhHhhCCEEEecC-CceEEEecCCHHHHHH----------------HHHHH-----HHhcch-hhcccccEEEE
Confidence 55555 367899999975 8999998877542100 00000 001111 46889999999
Q ss_pred EEEEEeeceEEEEEC-CEEEEEeeccc----CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCCCCccc
Q 015066 271 TVQSLKPYGAFIDIG-GINGLLHVSQI----SHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 343 (414)
Q Consensus 271 ~V~~i~~~G~fV~l~-gv~Glvh~sel----s~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~p~~~~ 343 (414)
+|++|.+||+||+|. |++||||+|+| +|+|+.++.+.|++||.|+|+|+++|+ ++||+||+|++.++||+..
T Consensus 674 ~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw~~~ 750 (757)
T 1e3p_A 674 SVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAASDE 750 (757)
T ss_dssp BEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC----------------
T ss_pred EEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecCCCCchhhh
Confidence 999999999999996 89999999999 999999999999999999999999998 9999999999999999754
No 18
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.51 E-value=1.4e-15 Score=162.66 Aligned_cols=87 Identities=34% Similarity=0.591 Sum_probs=0.0
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 338 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~~ 338 (414)
.++++|++|.|+|++|.+||+||+|. |++||||+|+++++++.++.+.|++||.|+|||+++|+ ++||.||+|++.++
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccC
Confidence 68899999999999999999999997 89999999999999999999999999999999999998 79999999999999
Q ss_pred CCcccCCch
Q 015066 339 PGDMIRNPK 347 (414)
Q Consensus 339 p~~~~~~~~ 347 (414)
||+++.+..
T Consensus 712 ~G~~~~~k~ 720 (726)
T 4aid_A 712 TGEDLSKKE 720 (726)
T ss_dssp ---------
T ss_pred cchhhhhhh
Confidence 999886544
No 19
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.45 E-value=1.8e-14 Score=129.55 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=88.0
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhh
Q 015066 98 ELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175 (414)
Q Consensus 98 ~~G~iV~G~V~~v~~~G~~Vdig--~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~ 175 (414)
++|+++.|+|+++.++|+||+|. ++.+|+||.+|+++.+..++.+. +++||.+.|+|+++|++++++.||+|....
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~-~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~- 91 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKL-IRVGKNDVAVVLRVDKEKGYIDLSKRRVSS- 91 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCC-CCTTSEEEEEEEEEETTTTEEEEESTTCCH-
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHc-CCCCCEEEEEEEEEECCCCeEEEEEEecCc-
Confidence 48999999999999999999993 67999999999999888888887 999999999999999999999999998766
Q ss_pred HHHHHhhhcccCCeEEEEEEEEEe-cCcE
Q 015066 176 LAWERCRQLQSEDVVVKGKVVGAN-KGGV 203 (414)
Q Consensus 176 ~~~~~l~~~~~~g~iv~G~V~~v~-~~G~ 203 (414)
.+|..+.+.++.|+.++|+|.++. ++|+
T Consensus 92 ~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 689998888888889999999997 7787
No 20
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.42 E-value=9.8e-14 Score=117.15 Aligned_cols=79 Identities=29% Similarity=0.376 Sum_probs=67.2
Q ss_pred HhhccccEEEEEEEEEEeeceEEEEEC--CEEEEEeeccc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 015066 259 QAQLGIGSVVIGTVQSLKPYGAFIDIG--GINGLLHVSQI-SHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335 (414)
Q Consensus 259 ~~~l~~G~iv~g~V~~i~~~G~fV~l~--gv~Glvh~sel-s~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~ 335 (414)
..++++|++|.|+|++|.+||+||+|+ +..|++|.++. +|.++.++.+.|++||.|+|+|+++|+++++|.||+|+.
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 368999999999999999999999998 46666555553 344566889999999999999999999999999999976
Q ss_pred CC
Q 015066 336 EP 337 (414)
Q Consensus 336 ~~ 337 (414)
..
T Consensus 96 ~l 97 (119)
T 1wi5_A 96 EV 97 (119)
T ss_dssp CS
T ss_pred hc
Confidence 43
No 21
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.36 E-value=1.5e-12 Score=118.42 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=70.6
Q ss_pred hccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCccccc-----------CcccccCCCCEEEEEEEEEeCCCC---
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA-----------DIATVLQPGDTLKVMILSHDRERG--- 326 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~~-----------~~~~~~~~G~~V~vkVl~id~e~~--- 326 (414)
.+.+|++|.|+|+++.+||+||++++++||+|+|+++++++. ++.+.|++||.|+|+|+++|.+++
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCC
Confidence 377899999999999999999999989999999999988775 788999999999999999998755
Q ss_pred --eEEEEEeeCCCCC
Q 015066 327 --RVSLSTKKLEPTP 339 (414)
Q Consensus 327 --ri~LS~K~~~~~p 339 (414)
+|.||+|+...-|
T Consensus 158 ~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 158 GSKIALTMRQPYLGK 172 (187)
T ss_dssp -CEEEEECCSTTCEE
T ss_pred ccEEEEEEcCCCCCc
Confidence 9999999865433
No 22
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.36 E-value=2e-12 Score=107.32 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=76.5
Q ss_pred HHHHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEE
Q 015066 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVL 167 (414)
Q Consensus 88 ~~l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~L 167 (414)
..|+.+...+++|++++|+|+++.++|+||+++.+.+||||.+++++.+..++.+. +.+|+.+.|+|+++|..++++.|
T Consensus 20 ~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~-~~vGd~V~v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLV-LSVGDEVEAKFTGVDRKNRAISL 98 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGS-CCTTCEEEEEEEEEETTTTEEEE
T ss_pred CHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhc-cCCCCEEEEEEEEEECCCCEEEE
Confidence 45677777899999999999999999999999988999999999998877777776 99999999999999988889999
Q ss_pred Eeeehh
Q 015066 168 SLRMIQ 173 (414)
Q Consensus 168 S~k~~~ 173 (414)
|++...
T Consensus 99 S~k~~~ 104 (109)
T 2khj_A 99 SVRAKD 104 (109)
T ss_dssp ETTSSS
T ss_pred EEeecC
Confidence 998754
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.34 E-value=1.6e-13 Score=133.46 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=98.6
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig--~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~ 173 (414)
.+++|+++.|+|+++.++|+||+|+ ++.+||+|.+++++.+..++.+. +++||.+.|+|+++|++++++.||+|...
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~-~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKL-IRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTT-CSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHh-cCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 3569999999999999999999997 67999999999999888888887 99999999999999999999999999876
Q ss_pred hhHHHHHhhhcccCCeEEEEEEEEEec-CcEEEE
Q 015066 174 YELAWERCRQLQSEDVVVKGKVVGANK-GGVVAE 206 (414)
Q Consensus 174 ~~~~~~~l~~~~~~g~iv~G~V~~v~~-~G~~V~ 206 (414)
. .+|..+.+.+..|+++.|+|+++.+ +|+|+.
T Consensus 89 ~-~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 89 P-EEAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred c-ChHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 4 6899888888888899999999988 699763
No 24
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.1e-12 Score=147.01 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=73.7
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR-VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~-~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
.++++|++|.|+|++|++||+||+|+ |++||||+|+|++.+ +.++.+.|++||.|+|+|+++|.+++||.||||..+
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 976 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 976 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHH
Confidence 58899999999999999999999998 899999999999998 899999999999999999999999999999999764
No 25
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.32 E-value=1.8e-12 Score=108.74 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=77.7
Q ss_pred HHHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccc-ccCCccccCccCCcEEEEEEEEEeCCCCeEEE
Q 015066 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVL 167 (414)
Q Consensus 89 ~l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~-~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~L 167 (414)
-|+.....+++|+++.|+|+++.++|+||+++++.+||+|.+++++. ...++.+. +.+||.++|+|+++|.+++++.|
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~-~~vGd~V~vkV~~vd~~~~rI~l 98 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKV-VNVGDVVEVMVLDIDEERRRISL 98 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTT-CCTTCEEEEEEEEEETTTTEEEE
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccE-ECCCCEEEEEEEEEECCCCEEEE
Confidence 34555567899999999999999999999999889999999999863 45566665 89999999999999998999999
Q ss_pred EeeehhhhHHHHHhh
Q 015066 168 SLRMIQYELAWERCR 182 (414)
Q Consensus 168 S~k~~~~~~~~~~l~ 182 (414)
|++.... .+|+.+.
T Consensus 99 slk~~~~-~p~~~~~ 112 (115)
T 2khi_A 99 GLKQCKA-NPWQQFA 112 (115)
T ss_dssp CCCCCCS-SCCCCCC
T ss_pred EEEecCc-CHHHHHH
Confidence 9998765 4676553
No 26
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.31 E-value=2.7e-13 Score=145.11 Aligned_cols=155 Identities=10% Similarity=0.126 Sum_probs=13.0
Q ss_pred cCCCCCCccCcccchhhhhhhhhhcccCcceEEEEEEeCCcchhHHHHHHHHHHHHhhcccCCCCCCCCC---HHHHHH-
Q 015066 13 CPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFT---LEEFHS- 88 (414)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iiee~~~~~~~~~~~~~~~~---~~~f~~- 88 (414)
|-.-|...+|+||| -|..++..|.++.-.|++++ ..+++|+++.-..++-..++.+... .+..++
T Consensus 556 al~~~r~~~~~~ap-------~~~~~~i~~~ki~~vig~gg----~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A 624 (726)
T 4aid_A 556 AMDAPRADVGDFAP-------KIETINIPTDKIREVIGSGG----KVIREIVATTGAKVDINDDGVVKVSASDGAKIKAA 624 (726)
T ss_dssp TCSSCCSSCCSSCC-------C-----------------------------------------------CCSCHHHHHHH
T ss_pred HHHhhhhhhcccCC-------eEEEEeCCHHHHHhhcCCCc----hhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHH
Confidence 33445556999999 67888999999999999999 7888899987666654444444332 333333
Q ss_pred --HHHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEE
Q 015066 89 --ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLV 166 (414)
Q Consensus 89 --~l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~ 166 (414)
.++.+...+++|++++|+|+++.++|+||+|.++.+|++|.+|+++.+..++++. +++||.|+|+|+++|+ ++++.
T Consensus 625 ~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~-~kvGD~V~VkVi~iD~-~grI~ 702 (726)
T 4aid_A 625 IDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDV-LKEGQMVKVKLLGFDD-RGKTK 702 (726)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCcccc-CCCCCEEEEEEEEECC-CCcEE
Confidence 3555557889999999999999999999999888999999999999988888887 9999999999999997 79999
Q ss_pred EEeeehhhhHHHHHh
Q 015066 167 LSLRMIQYELAWERC 181 (414)
Q Consensus 167 LS~k~~~~~~~~~~l 181 (414)
||+|....+ .|+.+
T Consensus 703 LS~K~~~~~-~G~~~ 716 (726)
T 4aid_A 703 LSMKVVDQE-TGEDL 716 (726)
T ss_dssp ---------------
T ss_pred EEEeecccC-cchhh
Confidence 999987763 55555
No 27
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.30 E-value=4.4e-12 Score=114.58 Aligned_cols=75 Identities=29% Similarity=0.558 Sum_probs=66.8
Q ss_pred hccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccc-----------cCcccccCCCCEEEEEEEEEeCC----C
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV-----------ADIATVLQPGDTLKVMILSHDRE----R 325 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~-----------~~~~~~~~~G~~V~vkVl~id~e----~ 325 (414)
.+.+|+++.|+|+++++||+||+++.++||+|+|++.++++ ++..+.|+.||.|+|||+++|.+ .
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC------
T ss_pred eccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCccc
Confidence 47799999999999999999999999999999999999876 57788999999999999999864 3
Q ss_pred CeEEEEEeeC
Q 015066 326 GRVSLSTKKL 335 (414)
Q Consensus 326 ~ri~LS~K~~ 335 (414)
.||.||||+-
T Consensus 158 ~rI~ls~k~~ 167 (180)
T 4ayb_E 158 PRIALTMRQP 167 (180)
T ss_dssp -CEEEECCST
T ss_pred CcEEEEcCCC
Confidence 5899999974
No 28
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.29 E-value=1.8e-11 Score=95.93 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~ 174 (414)
++++|+++.|+|.++.++|+||+++++.+|++|.+++++.+. +. +.+||.++|+|+++|++++++.||+++...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~-~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----EN-LNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GG-CCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----ee-eCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 578999999999999999999999988999999999986543 33 899999999999999888999999987653
No 29
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.29 E-value=3.6e-12 Score=118.15 Aligned_cols=108 Identities=18% Similarity=0.072 Sum_probs=66.3
Q ss_pred ccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccccCc----------ccccCCCCEEEEEEEEEeCCCC---eE
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI----------ATVLQPGDTLKVMILSHDRERG---RV 328 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~~~~----------~~~~~~G~~V~vkVl~id~e~~---ri 328 (414)
..+|+++.|+|+++++||+||+++..+||||+|+|++.+.-++ .+.+++||.|+|+|+++|.+.+ +|
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEE
Confidence 5799999999999999999999987999999999986533222 2679999999999999998774 77
Q ss_pred EEEEeeCCCCCCcccCCchhhhhhHHHHHHHHHHHHHHHHHhH
Q 015066 329 SLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMA 371 (414)
Q Consensus 329 ~LS~K~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (414)
. |||+.-.-|++..++.+...-.+.-.+ .-.++.+.+|++.
T Consensus 161 g-Smk~~~LG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 201 (215)
T 2b8k_G 161 G-SIKEDYLGAISHEKRRWKKNFIAVSAA-NRFKKISSSGALD 201 (215)
T ss_dssp E-ECCSTTCEEC-------------------------------
T ss_pred E-EcCCCCCCCcchhhHHHHhhhHhhhhh-hcccccccCCccc
Confidence 7 998876666765555554332232222 2234555555543
No 30
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.29 E-value=4.4e-12 Score=117.20 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=70.6
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC---------CEEEEEeecccCccccc--CcccccCCCCEEEEEEEEEeCCCCeEE
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG---------GINGLLHVSQISHDRVA--DIATVLQPGDTLKVMILSHDRERGRVS 329 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~---------gv~Glvh~sels~~~~~--~~~~~~~~G~~V~vkVl~id~e~~ri~ 329 (414)
.+++|++|.|+|+++.++|+||+|. +++|++|+|++++.+.. ++.+.|++||.|+|+|++++.+++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 5889999999999999999999984 57999999999999888 899999999999999999998778999
Q ss_pred EEEeeCC
Q 015066 330 LSTKKLE 336 (414)
Q Consensus 330 LS~K~~~ 336 (414)
||+|+.+
T Consensus 158 LS~k~~~ 164 (209)
T 2nn6_I 158 LTTAENE 164 (209)
T ss_dssp EECCSSS
T ss_pred EEEecCC
Confidence 9999854
No 31
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.27 E-value=1.2e-12 Score=141.44 Aligned_cols=77 Identities=38% Similarity=0.604 Sum_probs=73.3
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
.++++|++|.|+|++|++||+||+++ +++||||+|+|++.++.++.+.|++||.|+|+|+++|.++++|.||||..+
T Consensus 650 ~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 46889999999999999999999998 799999999999999999999999999999999999999999999999654
No 32
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.26 E-value=2.2e-11 Score=104.29 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=72.4
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~ 174 (414)
++++|+++.|+|+++.++|+||+|+++.+|+||.+++++.+..++.+. +.+||.|.|+|+++|.+++++.||++....
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~-~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEH-LSVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGT-CCTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCcccc-CCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 678999999999999999999999888999999999998888887776 999999999999999889999999997654
No 33
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.25 E-value=5.8e-13 Score=147.30 Aligned_cols=78 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR-VADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 337 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~-~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~ 337 (414)
.++++|++|.|+|++|++||+||+|+ |++||||+|+|++.+ +.++.+.|++||.|+|+|+++|.+++||.||||..+.
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl 980 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDV 980 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHHh
Confidence 57899999999999999999999998 899999999999998 8999999999999999999999999999999998764
No 34
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.23 E-value=1.8e-11 Score=97.63 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=67.9
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC--CeeEEEcCc-cccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeeh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITA--KSSAYLPTQ-EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~--k~~g~lp~s-Els~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~ 172 (414)
..++|++++|+|+ +.++|+||++.. +.+|++|.+ ++++.+..++++. + +||+++++|+++|.+++++.||+|..
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~-~-~Gd~V~VkV~~vd~~~~kI~lslk~~ 84 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDK-L-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHH-H-TTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHE-e-CCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4589999999999 999999999963 699999999 9998887777776 6 99999999999999999999999976
Q ss_pred h
Q 015066 173 Q 173 (414)
Q Consensus 173 ~ 173 (414)
.
T Consensus 85 ~ 85 (88)
T 1luz_A 85 C 85 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.22 E-value=5e-11 Score=133.83 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHh-hcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccc
Q 015066 56 EREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEK-YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134 (414)
Q Consensus 56 ~~~~l~~iiee~~~~~~~~~~~~~~~~~~~f~~~l~~-~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~ 134 (414)
.+.+|++|+.|+.++.++.+.+...++..+.-.++.. ...++++|++|+|+|+++.++|+||+|+.+.+|+||.+++++
T Consensus 858 K~~TL~dI~~EL~~P~rD~R~~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd 937 (1219)
T 3psi_A 858 KLNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAG 937 (1219)
T ss_dssp CHHHHHHHHHHHHSSSCCCSBCCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSS
T ss_pred ccchHHHHHHHHhccCCCCCcccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCC
Confidence 3679999999999999999988665555544444432 235899999999999999999999999989999999999999
Q ss_pred cc-cCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhhH
Q 015066 135 HK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176 (414)
Q Consensus 135 ~~-~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~~ 176 (414)
.+ ..++.+. +++||.|+|+|+++|.+++++.||+|......
T Consensus 938 ~~~v~~p~~v-~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~ 979 (1219)
T 3psi_A 938 AQLRRPANEI-YEIGKTYPAKVIYIDYANITAEVSLLDHDVKQ 979 (1219)
T ss_dssp TTSCSCSTTT-SCTTCEEEEEEEEEEGGGTEEEEECCHHHHC-
T ss_pred CcccCCHHHc-CCCCCEEEEEEEEEECCCCEEEEEecHHHhcc
Confidence 87 6788877 99999999999999999999999999876543
No 36
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.22 E-value=2.4e-12 Score=123.53 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=95.2
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhh
Q 015066 97 SELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (414)
Q Consensus 97 l~~G~iV~G~V~~v~~~G~~Vdig--~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~ 174 (414)
.++|+++.|+|+++.++|+||+++ ++.+||||.+++++.+..++.+. +++||.+.|+|+++|.+++++.||++....
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~-~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDY-LKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGT-CCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhc-cCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 468999999999999999999997 57999999999999888888877 999999999999999999999999998765
Q ss_pred hHHHHHhhhcccCCeEEEEEEEEEe-cCcEE
Q 015066 175 ELAWERCRQLQSEDVVVKGKVVGAN-KGGVV 204 (414)
Q Consensus 175 ~~~~~~l~~~~~~g~iv~G~V~~v~-~~G~~ 204 (414)
..|....+.+..|+.+.|.|..+. ++|+.
T Consensus 88 -~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~ 117 (275)
T 3aev_A 88 -QQRKAKLQEFKRAQKAENLLRLAAEKLGKD 117 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -chhHHHHHhccCCCeEEEEEEEchhhcCCC
Confidence 678877777778888999999997 88883
No 37
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=102.75 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=76.3
Q ss_pred HhhcccCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCC--CeEEE
Q 015066 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLVL 167 (414)
Q Consensus 91 ~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~--~~i~L 167 (414)
+.+...+++|+++.|+|+++.++|+||+|++ +.+||||.+++++.+..++.+. +++|+.|.|+|+++|..+ +++.|
T Consensus 14 ~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~-~~~Gd~V~VkV~~vd~~~~~~~i~L 92 (119)
T 2cqo_A 14 ETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI-VDVGDKVWVKLIGREMKNDRIKVSL 92 (119)
T ss_dssp CCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHH-CCTTCEEEEEEEEEEECSSCEEEEE
T ss_pred hhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhc-CCCCCEEEEEEEEEeccccCceEEE
Confidence 3345678999999999999999999999965 4799999999998887777777 999999999999999754 69999
Q ss_pred EeeehhhhHHHHHhh
Q 015066 168 SLRMIQYELAWERCR 182 (414)
Q Consensus 168 S~k~~~~~~~~~~l~ 182 (414)
|+|.... ..|+.+.
T Consensus 93 Slk~~~~-~~~~~~~ 106 (119)
T 2cqo_A 93 SMKVVNQ-GTGKDLD 106 (119)
T ss_dssp ESTTBCS-SSCCBSC
T ss_pred EEeeccc-CCccccC
Confidence 9998764 4666553
No 38
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.17 E-value=4.2e-11 Score=108.04 Aligned_cols=70 Identities=33% Similarity=0.449 Sum_probs=65.4
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-----------CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEE
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-----------GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-----------gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~ 329 (414)
.++ |++|.|+|++|.++|+||+|. +++|++|+|++++.++.++.+.|++||.|+|+|++ +++.
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 467 999999999999999999995 58999999999999999999999999999999998 8899
Q ss_pred EEEeeCC
Q 015066 330 LSTKKLE 336 (414)
Q Consensus 330 LS~K~~~ 336 (414)
||+|..+
T Consensus 129 LS~k~~~ 135 (179)
T 3m7n_A 129 LSTKEEE 135 (179)
T ss_dssp EECCSTT
T ss_pred EEEecCC
Confidence 9999754
No 39
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.17 E-value=2.4e-12 Score=138.26 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCccCcccchhhhhhhhhhcccCcceEEEEEEeCCcchhHHHHHHHHHHHHhhcccCCCCCCCCCHHHH------HHH
Q 015066 16 ISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEF------HSA 89 (414)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iiee~~~~~~~~~~~~~~~~~~~f------~~~ 89 (414)
-+...+|+||| -|..++..|.+..-.|++++ ..+++|+++.-..++-..+..+..+..+. .+.
T Consensus 549 ~~~~~~~~~ap-------~~~~~~i~~~ki~~~ig~gG----k~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~ 617 (723)
T 3cdi_A 549 APRGDISEFAP-------RIHTIKINPDKIKDVIGKGG----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 617 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchhccccCc-------eEEEEEECHHHhcccccccc----eeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHH
Confidence 34556899999 77888999999999999999 56677777743333322233333333322 234
Q ss_pred HHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEe
Q 015066 90 LEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSL 169 (414)
Q Consensus 90 l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~ 169 (414)
++.+...+++|++++|+|+++.++|+||++..+.+||+|.+++++.+..++.+. +++||+|+++|+++|. ++++.||+
T Consensus 618 i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~-~~vGd~V~VkVi~vd~-~grI~LS~ 695 (723)
T 3cdi_A 618 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSI 695 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccc-cCCCCEEEEEEEEECC-CCcEEEEE
Confidence 555556789999999999999999999999888999999999999888888887 9999999999999997 89999999
Q ss_pred eehhhhHHHHHh
Q 015066 170 RMIQYELAWERC 181 (414)
Q Consensus 170 k~~~~~~~~~~l 181 (414)
|.... ..|..+
T Consensus 696 k~~~~-~~g~~~ 706 (723)
T 3cdi_A 696 KEATE-QSQPAA 706 (723)
T ss_dssp ------------
T ss_pred EeccC-CCCccc
Confidence 98754 345443
No 40
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=9e-11 Score=96.40 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=70.1
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC---CeeEEEcCccc-cccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEee
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITA---KSSAYLPTQEA-CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR 170 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~---k~~g~lp~sEl-s~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k 170 (414)
..+++|+++.|+|+++.++|+||++++ +.+||||.+|+ ++.+..++.+. +++||.+.|+|+++|. +++.||+|
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~-~~~Gd~V~VkV~~vd~--~~i~LSlk 84 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADV-VSKGQRVKVKVLSFTG--TKTSLSMK 84 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHH-CCTTCEEEEEEEEEET--TEEEEEST
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccE-eCCCCEEEEEEEEEEC--CeeEEEEe
Confidence 467899999999999999999999986 79999999999 56666677666 8999999999999996 69999999
Q ss_pred ehhhhHHHHH
Q 015066 171 MIQYELAWER 180 (414)
Q Consensus 171 ~~~~~~~~~~ 180 (414)
.... ..|..
T Consensus 85 ~~~~-~~~~~ 93 (103)
T 2eqs_A 85 DVDQ-ETGED 93 (103)
T ss_dssp TBCT-TTCCB
T ss_pred eccc-CCchh
Confidence 8655 34443
No 41
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.15 E-value=7.7e-11 Score=105.57 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=59.2
Q ss_pred ccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccc----cCc------ccccCCCCEEEEEEEEEeCCCC---eE
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV----ADI------ATVLQPGDTLKVMILSHDRERG---RV 328 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~----~~~------~~~~~~G~~V~vkVl~id~e~~---ri 328 (414)
..+|+++.|+|+++++||+||+++..+||+|+|+|++.+. .++ ++.|++||.|+|||+++|.+.+ ++
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~i 160 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAI 160 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcEEE
Confidence 5699999999999999999999988999999999976522 211 2679999999999999998764 55
Q ss_pred EEEEee
Q 015066 329 SLSTKK 334 (414)
Q Consensus 329 ~LS~K~ 334 (414)
. |||+
T Consensus 161 g-sm~~ 165 (171)
T 1y14_B 161 G-SIKE 165 (171)
T ss_dssp E-ECCS
T ss_pred E-EcCC
Confidence 5 6654
No 42
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.14 E-value=7.3e-11 Score=105.80 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=60.7
Q ss_pred ccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccc----cC--------cccccCCCCEEEEEEEEEeCCCC---
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV----AD--------IATVLQPGDTLKVMILSHDRERG--- 326 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~----~~--------~~~~~~~G~~V~vkVl~id~e~~--- 326 (414)
..+|+++.|+|+++++||+||+++..+||||+|+|++.+. .+ ..+.|++||.|+|||+++|.+.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 3589999999999999999999988889999999975522 21 15579999999999999998766
Q ss_pred eEEEEEee
Q 015066 327 RVSLSTKK 334 (414)
Q Consensus 327 ri~LS~K~ 334 (414)
++. |||+
T Consensus 159 ~ig-sm~~ 165 (172)
T 2c35_B 159 AIG-SLMD 165 (172)
T ss_dssp EEE-ECCS
T ss_pred EEE-EecC
Confidence 666 8875
No 43
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.8e-11 Score=135.53 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHh-hcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccc
Q 015066 56 EREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEK-YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134 (414)
Q Consensus 56 ~~~~l~~iiee~~~~~~~~~~~~~~~~~~~f~~~l~~-~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~ 134 (414)
.+.+|++|+.|+.++.++.+.+...++..+.-.++.. ...++++|++|.|+|+++.++|+||+++.+.+|+||.+++++
T Consensus 861 k~~TL~dI~~EL~~P~~D~R~~f~~~~~~e~~~~LTget~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd 940 (1030)
T 3psf_A 861 KLNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAG 940 (1030)
T ss_dssp CHHHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHHHCCC-----------------------------------------
T ss_pred ccchHHHHHHHHhccCCCCCcccCccchhhhhhhhccccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCC
Confidence 3679999999999999999988665555554444432 235889999999999999999999999988999999999998
Q ss_pred cc-cCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhhHHHH
Q 015066 135 HK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179 (414)
Q Consensus 135 ~~-~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~~~~~ 179 (414)
.+ ..++.+. +++|+.|+|+|+++|.+++++.||+|.......|.
T Consensus 941 ~~~v~~~~~v-~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~~ 985 (1030)
T 3psf_A 941 AQLRRPANEI-YEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQYV 985 (1030)
T ss_dssp ----------------------------------------------
T ss_pred CcccCCHHHc-CCCCCEEEEEEEEEECCCCEEEEEechHHhccccc
Confidence 87 6788877 99999999999999999999999999877655553
No 44
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.03 E-value=3.6e-12 Score=137.39 Aligned_cols=152 Identities=15% Similarity=0.118 Sum_probs=56.0
Q ss_pred CccCcccchhhhhhhhhhcccCcceEEEEEEeCCcchhHHHHHHHHHHHHhhcccCCCCCCCCCHHHHHH------HHHh
Q 015066 19 TRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHS------ALEK 92 (414)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iiee~~~~~~~~~~~~~~~~~~~f~~------~l~~ 92 (414)
..+|+||| -|..++..|.+..-.|++++ ..+++|+++.-..++-..+..+..+..+... .++.
T Consensus 590 ~~~~~~ap-------~~~~~~I~~~ki~~vIG~gG----k~Ik~I~~~~G~~IdI~~dG~v~Is~~~~~~~~~a~~~i~~ 658 (757)
T 1e3p_A 590 DEMSPNAP-------RIITVKIPVDKIGEVIGPKR----QMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATING 658 (757)
T ss_dssp CCCCTTSC-------BCCCC----------------------CTTCCCCCSCC--------CCCBSSHHHHCC-------
T ss_pred ccccccCc-------eeEEEEEChHHeehcccccc----eeeehhhHhhCCEEEecCCceEEEecCCHHHHHHHHHHHHH
Confidence 66899999 77788999999999999999 4455555552211221123333333333221 2333
Q ss_pred hc--ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccc----cccccCCccccCccCCcEEEEEEEEEeCCCCeEE
Q 015066 93 YD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA----CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLV 166 (414)
Q Consensus 93 ~~--~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEl----s~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~ 166 (414)
+. ..+++|++++|+|+++.++|+||++.++.+|++|.+++ ++.+..++++. +++||+|+|+|+++|+ ++++.
T Consensus 659 i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~-~~vGd~V~VkVi~vd~-~grI~ 736 (757)
T 1e3p_A 659 IANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDV-LGVGQKVQVEIAEIDS-RGKLS 736 (757)
T ss_dssp --------------CBEEECC-CSCEECCC---CCCCC--------------------CCSSCBCCCCCCCCCS-SCC--
T ss_pred hcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccc-cCCCCEEEEEEEEECC-CCCEE
Confidence 33 46789999999999999999999998889999999999 88888888887 9999999999999998 89999
Q ss_pred EEeeehhhhHHHHHhhhc
Q 015066 167 LSLRMIQYELAWERCRQL 184 (414)
Q Consensus 167 LS~k~~~~~~~~~~l~~~ 184 (414)
||++.... .+|.....-
T Consensus 737 LS~k~~~~-~pw~~~~~~ 753 (757)
T 1e3p_A 737 LIPVIEGE-EAASDEKKD 753 (757)
T ss_dssp ------------------
T ss_pred EEEecCCC-Cchhhhhhc
Confidence 99998765 588776543
No 45
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.01 E-value=9.8e-11 Score=104.99 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=61.6
Q ss_pred hccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCccccc----------CcccccCCCCEEEEEEEEEeCCCC---e
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA----------DIATVLQPGDTLKVMILSHDRERG---R 327 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~~----------~~~~~~~~G~~V~vkVl~id~e~~---r 327 (414)
...+|++++|+|+++++||+||+++.++||+|+|+|++.+.- +..+.|++||.|+|||+++|.+.+ +
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 366899999999999999999999988999999999765332 345789999999999999998874 5
Q ss_pred EEEEEee
Q 015066 328 VSLSTKK 334 (414)
Q Consensus 328 i~LS~K~ 334 (414)
|. |||+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 55 6663
No 46
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.01 E-value=3.6e-10 Score=107.09 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=68.4
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccc---cCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV---ADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~---~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~ 335 (414)
.+++|++|.|+|+++.++|+||+++ +.+|++|++++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 4789999999999999999999999 6999999999998777 8889999999999999999996 47999999865
No 47
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.99 E-value=1.1e-09 Score=107.85 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=81.7
Q ss_pred ccccccCCeEEEEEEEeecccceEEeehhhhhhhH---------Hhhcc--ccEEEEEEEEEEeeceEEEEECCEEEEEe
Q 015066 224 TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS---------QAQLG--IGSVVIGTVQSLKPYGAFIDIGGINGLLH 292 (414)
Q Consensus 224 ~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~---------~~~l~--~G~iv~g~V~~i~~~G~fV~l~gv~Glvh 292 (414)
++...+|+.+.+.|...|.. +....+.|+.+.+. +++++ .|++|+|+|.++.++|+||++++.+|++|
T Consensus 84 d~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp 162 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLP 162 (344)
T ss_dssp CTTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEE
T ss_pred CccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEe
Confidence 34456899999999888753 44555556654321 23444 89999999999999999999999999999
Q ss_pred ecccCcccccCcccccCCCCEEEEEEEEEeCCCC--eEEEEEe
Q 015066 293 VSQISHDRVADIATVLQPGDTLKVMILSHDRERG--RVSLSTK 333 (414)
Q Consensus 293 ~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~--ri~LS~K 333 (414)
.++++ |.+.|++||+|+|+|++++++++ +|.||.+
T Consensus 163 ~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 163 KKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 99986 56789999999999999997665 5666655
No 48
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.98 E-value=1.5e-10 Score=125.26 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccc
Q 015066 57 REELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136 (414)
Q Consensus 57 ~~~l~~iiee~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~ 136 (414)
...+.+|+.|+.++.++.+.+ |....|.+..+.. .++++|+++.|+|+++.++|+||+++.+.+|+||.+++++.+
T Consensus 616 l~tl~rIi~eL~kpg~d~R~~---~~~~~~~~~ve~~-~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~ 691 (785)
T 3bzc_A 616 LPTVTDILKELDKPGRDPRPE---FKTAEFQEGVESL-KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKF 691 (785)
T ss_dssp HHHHHHHHHHHHSTTCCCSCC---CCTTTTCCCCCSS-TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSC
T ss_pred cHHHHHHHHHHhccCCChhhh---cccchhhhcccch-hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccc
Confidence 348999999999999987764 3333333222333 368999999999999999999999998899999999999988
Q ss_pred cCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehh
Q 015066 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (414)
Q Consensus 137 ~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~ 173 (414)
..++.+. +++||.|+|+|+++|.+++++.||++...
T Consensus 692 v~d~~~~-~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 692 VKDPYEV-VKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp CSCHHHH-CCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred cCChhhe-eCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 8888877 99999999999999999999999998543
No 49
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.97 E-value=1.7e-10 Score=110.33 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=87.6
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC--CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig--~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~ 173 (414)
.+++|+++.|+|.++.++|+||+++ ++.+||||.+|+++.+..++.+. +++||.+.|+|+++|++++++.||++...
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~-~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDV-LKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHH-SCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHh-CcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 6789999999999999999999997 67999999999998888888777 99999999999999988999999999876
Q ss_pred hhHHHHHhhhcccCCeEEEEEEEEEe
Q 015066 174 YELAWERCRQLQSEDVVVKGKVVGAN 199 (414)
Q Consensus 174 ~~~~~~~l~~~~~~g~iv~G~V~~v~ 199 (414)
. ..|..+.+.+..|+.+.+.|..+.
T Consensus 87 ~-~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 87 D-DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhHHHHHHhccccCccceeeeehh
Confidence 4 688887776666655555555554
No 50
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.97 E-value=4.2e-10 Score=105.79 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=67.0
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcc----cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD----RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~----~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~ 335 (414)
.+++|++|.|+|+++.++|+||+++ +.+|++|++++++. ...++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 5789999999999999999999999 69999999999863 346788899999999999999996 46899999864
Q ss_pred C
Q 015066 336 E 336 (414)
Q Consensus 336 ~ 336 (414)
.
T Consensus 142 ~ 142 (235)
T 2z0s_A 142 G 142 (235)
T ss_dssp S
T ss_pred c
Confidence 3
No 51
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.96 E-value=8.6e-10 Score=90.18 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=64.8
Q ss_pred CCeEEEEEEEEEe---cCcEEEEE--CCEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEeehhhhhhhHHhh
Q 015066 187 EDVVVKGKVVGAN---KGGVVAEV--EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261 (414)
Q Consensus 187 ~g~iv~G~V~~v~---~~G~~V~i--~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~~~~ 261 (414)
.++..+|+|+..+ .+| |+.. ++.++|+|+|.+.+..- ....
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---------------------------------~~~~ 58 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---------------------------------VRGN 58 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC---------------------------------CCCC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc---------------------------------cccC
Confidence 3457899999983 457 5554 37999999999986521 0145
Q ss_pred ccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccc
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~ 301 (414)
+++|+.|.+.|+++.+||+||+|. +++||||+|+|+|.++
T Consensus 59 l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 59 PQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred CCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 789999999999999999999996 8999999999999875
No 52
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.92 E-value=2.2e-09 Score=90.27 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=65.0
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC-CCeeEEEcCcccc-ccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehh
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEAC-IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig-~k~~g~lp~sEls-~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~ 173 (414)
++++|++++|+|.++.++|+||+++ .+..|++|.+++. +....++.+. +++||.++|+|+++|..++++.||+++..
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAK-LKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCC-CCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCE-eCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 6899999999999999999999998 5677888877753 2222345555 89999999999999988899999998765
Q ss_pred h
Q 015066 174 Y 174 (414)
Q Consensus 174 ~ 174 (414)
.
T Consensus 97 l 97 (119)
T 1wi5_A 97 V 97 (119)
T ss_dssp S
T ss_pred c
Confidence 4
No 53
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.91 E-value=2.3e-09 Score=100.35 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=68.1
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcc-cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~-~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
.+++||+|.|+|+++.++|+||+++ ...|++|+++++.. ...+..+.|++||.|.|+|++++. .+++.||+|+..
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~~ 130 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRI 130 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcccc
Confidence 4789999999999999999999999 69999999999964 667889999999999999999986 579999998753
No 54
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.77 E-value=1.7e-08 Score=93.01 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeC--------CCeeEEEcCccccccccC--CccccCccCCcEEEEEEEEEeCCCCe
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDIT--------AKSSAYLPTQEACIHKIK--HVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig--------~k~~g~lp~sEls~~~~~--~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
+.+++|++|.|+|+++.++|+||+|+ .+.+|+||.+|++..+.. ++.+. |++||.|.++|+++++.+++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~-l~~GD~V~akVisi~~~~~~ 155 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKS-FRPGDIVLAKVISLGDAQSN 155 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGT-CCSSSEEEEEEEEEETTTTE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhh-cCCCCEEEEEEEEEeCCCCe
Confidence 46899999999999999999999984 357899999999977766 67776 99999999999999977779
Q ss_pred EEEEeeehh
Q 015066 165 LVLSLRMIQ 173 (414)
Q Consensus 165 i~LS~k~~~ 173 (414)
+.||+|...
T Consensus 156 i~LS~k~~~ 164 (209)
T 2nn6_I 156 YLLTTAENE 164 (209)
T ss_dssp EEEECCSSS
T ss_pred EEEEEecCC
Confidence 999998653
No 55
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.76 E-value=3e-08 Score=89.84 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=66.1
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccC-----------CccccCccCCcEEEEEEEEEeCCCC
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK-----------HVEEAGIVPGLKEEFVIIGENEADD 163 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~-----------~~~e~~~~vG~~v~v~Vl~id~~~~ 163 (414)
+...+|+++.|+|+++.++|+||+++. .+|++|.++++..+.. ++.+. +.+|+.++|+|++++...+
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKV-LEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCE-ECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeE-EcCCCEEEEEEEEEEcccC
Confidence 467899999999999999999999986 9999999999876543 45555 8999999999999997654
Q ss_pred -----eEEEEeeehh
Q 015066 164 -----SLVLSLRMIQ 173 (414)
Q Consensus 164 -----~i~LS~k~~~ 173 (414)
++.||++...
T Consensus 155 ~p~~~~I~lS~k~~~ 169 (187)
T 1go3_E 155 RKRGSKIALTMRQPY 169 (187)
T ss_dssp ----CEEEEECCSTT
T ss_pred CCCccEEEEEEcCCC
Confidence 9999999854
No 56
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.74 E-value=1.4e-08 Score=99.83 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=67.6
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCC--CeEEEEeeehhh
Q 015066 97 SELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLVLSLRMIQY 174 (414)
Q Consensus 97 l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~--~~i~LS~k~~~~ 174 (414)
.+.|++|+|+|.+++++|+||++| +.+|+||.+|+. +.+. +++|++++++|++++.++ .++.||++....
T Consensus 132 ~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i------p~E~-~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~ 203 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI------PGEE-IKAGDLVKVYIIDVVKTTKGPKILVSRRVPEF 203 (344)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC------TTCC-CCTTCEEEEEEEEEEEETTEEEEEEESSSHHH
T ss_pred hcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC------CCcC-CCCCCEEEEEEEEEEcCCCCcEEEEEeeccHH
Confidence 458999999999999999999998 799999999996 3344 899999999999998654 479999998888
Q ss_pred hHHHHHhh
Q 015066 175 ELAWERCR 182 (414)
Q Consensus 175 ~~~~~~l~ 182 (414)
...|..++
T Consensus 204 lk~LfelE 211 (344)
T 1hh2_P 204 VIGLMKLE 211 (344)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 78887764
No 57
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.62 E-value=6.2e-08 Score=87.25 Aligned_cols=71 Identities=24% Similarity=0.181 Sum_probs=64.2
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC----------CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCe
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITA----------KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~----------k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
+..+ |++|.|+|+++.++|+||+|+. ..+|+||.++++..+..++.+. |++||.|.++|++ ++
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~-~~~GD~V~akVi~-----~~ 126 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEA-VGYLDILKARVIG-----DN 126 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGT-CCTTCEEEEEEEE-----TT
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhc-CCCCCEEEEEEEC-----Ce
Confidence 3568 9999999999999999999987 7899999999998888888887 9999999999997 78
Q ss_pred EEEEeeeh
Q 015066 165 LVLSLRMI 172 (414)
Q Consensus 165 i~LS~k~~ 172 (414)
+.||+|..
T Consensus 127 i~LS~k~~ 134 (179)
T 3m7n_A 127 LRLSTKEE 134 (179)
T ss_dssp TEEECCST
T ss_pred EEEEEecC
Confidence 99998864
No 58
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.58 E-value=1e-07 Score=90.20 Aligned_cols=75 Identities=24% Similarity=0.193 Sum_probs=65.7
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc---CCccccCccCCcEEEEEEEEEeCCCCeEEEEeee
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI---KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~---~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~ 171 (414)
+..++|++|.|+|+++.++|+||+++...+|+||.+++...+. .++.+. +++||.|.++|+++++ ++++.||++.
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~-l~vGD~V~arVi~v~~-~~~i~LS~r~ 147 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRY-LDVGDYVIARIENFDR-SIDPVLSVKG 147 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSS-CCTTCEEEEEEEEEET-TEEEEEECCS
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhc-CCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 4679999999999999999999999988999999999986555 455555 8999999999999985 4789999864
No 59
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.56 E-value=2.1e-07 Score=86.94 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=65.4
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccc-ccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeee
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~-~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~ 171 (414)
+..++||+|.|+|+.+.++|+||+|+...+|+||.+++... ...+..+. +++||.|.++|+++++ ++.+.||+|.
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~-l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEV-LDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGT-CCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcc-cCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 36799999999999999999999999889999999999853 44556665 8999999999999985 5789999864
No 60
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.56 E-value=1.2e-07 Score=101.32 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=62.4
Q ss_pred hccccE--EEEEEEEEEeeceEEEEEC--CEEEEEeecccCc--cc--cc--------CcccccCCCCEEEEEEEEEeCC
Q 015066 261 QLGIGS--VVIGTVQSLKPYGAFIDIG--GINGLLHVSQISH--DR--VA--------DIATVLQPGDTLKVMILSHDRE 324 (414)
Q Consensus 261 ~l~~G~--iv~g~V~~i~~~G~fV~l~--gv~Glvh~sels~--~~--~~--------~~~~~~~~G~~V~vkVl~id~e 324 (414)
.-++|+ +++|+|++|++||+||+|. |++||||+|+|++ ++ +. +....|++||.|+|+|+++|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 456899 9999999999999999994 8999999999973 22 11 4456799999999999999999
Q ss_pred CCeEEEEE
Q 015066 325 RGRVSLST 332 (414)
Q Consensus 325 ~~ri~LS~ 332 (414)
+++|.|++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 61
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.55 E-value=1.3e-07 Score=86.90 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=55.3
Q ss_pred ccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccc-------------------cCcccccCCCCEEEEEEEEEe
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV-------------------ADIATVLQPGDTLKVMILSHD 322 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~-------------------~~~~~~~~~G~~V~vkVl~id 322 (414)
..+|+++.|+|++++++|+||+++.++|++|++++.+++. ++....|+.||.|++||.+++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4689999999999999999999977899999999977643 445667999999999999998
Q ss_pred CC
Q 015066 323 RE 324 (414)
Q Consensus 323 ~e 324 (414)
..
T Consensus 159 ~~ 160 (203)
T 3ayh_B 159 FV 160 (203)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 62
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.53 E-value=3.1e-07 Score=82.63 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=63.6
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc-----------CCccccCccCCcEEEEEEEEEeCC--
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-----------KHVEEAGIVPGLKEEFVIIGENEA-- 161 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~-----------~~~~e~~~~vG~~v~v~Vl~id~~-- 161 (414)
+...+|++++|+|++++++|+||+++. .+|++|.+++.+++. ++..+. +.+|+.|+++|++++.+
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~-~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKV-IQKGDKVRARVISVASTVT 154 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCC-CCTTCEEEEEEEEECC---
T ss_pred eeccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeE-ECCCCEEEEEEEEEeCCCC
Confidence 467899999999999999999999986 899999999987655 233444 88999999999999854
Q ss_pred --CCeEEEEeeehh
Q 015066 162 --DDSLVLSLRMIQ 173 (414)
Q Consensus 162 --~~~i~LS~k~~~ 173 (414)
..++.||+|..-
T Consensus 155 ~~~~rI~ls~k~~g 168 (180)
T 4ayb_E 155 GRLPRIALTMRQPY 168 (180)
T ss_dssp ----CEEEECCSTT
T ss_pred cccCcEEEEcCCCC
Confidence 358999999753
No 63
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.51 E-value=1.8e-07 Score=87.85 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=64.0
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccc----ccCCccccCccCCcEEEEEEEEEeCCCCeEEEEee
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH----KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR 170 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~----~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k 170 (414)
+.+++|++|.|+|+++.++|+||+|+.+.+|+||.++++.. +..++.+. +++||.|.++|+++++ ++++.||++
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~-l~~GD~V~a~Vi~v~~-~~~i~LS~k 139 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSL-LKVGDYIKAKVVAFDK-TRSPLLTVQ 139 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTS-SCTTCEEEEEEEEECT-TSCEEEECC
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhc-CCCCCEEEEEEEEECC-CCcEEEEEe
Confidence 47899999999999999999999999999999999999862 23445555 8999999999999985 468999986
No 64
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.42 E-value=3e-07 Score=94.97 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=63.6
Q ss_pred hhccccEEEEEEEEEEeec--eEEEEEC-CEEEEEeecccCcccc---------cCcccccCCCCEEEEEEEEEeCCCCe
Q 015066 260 AQLGIGSVVIGTVQSLKPY--GAFIDIG-GINGLLHVSQISHDRV---------ADIATVLQPGDTLKVMILSHDRERGR 327 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~--G~fV~l~-gv~Glvh~sels~~~~---------~~~~~~~~~G~~V~vkVl~id~e~~r 327 (414)
....+|++|.|+|++|.++ ||||+++ |..||+|++++++.++ .++.+.+++||.|.|+|++....++.
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCC
Confidence 4567899999999999999 9999999 8999999999988763 34678899999999999998876666
Q ss_pred EEEEEe
Q 015066 328 VSLSTK 333 (414)
Q Consensus 328 i~LS~K 333 (414)
-.||..
T Consensus 121 a~lTt~ 126 (517)
T 2bx2_L 121 AALTTF 126 (517)
T ss_dssp CEEESS
T ss_pred ceEEee
Confidence 666654
No 65
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.40 E-value=1e-06 Score=78.55 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=55.8
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCc----------cccCccCCcEEEEEEEEEeCCCC
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV----------EEAGIVPGLKEEFVIIGENEADD 163 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~----------~e~~~~vG~~v~v~Vl~id~~~~ 163 (414)
....+|++++|+|++++++|+||+++. .+||+|.+++++.+..++ ++. +++|+.++|+|+++|.+.+
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCE-ECTTCEEEEEEEEEEEETT
T ss_pred ccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceE-ECCCCEEEEEEEEEEcCCC
Confidence 467899999999999999999999998 999999999975432111 144 8899999999999987654
No 66
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.39 E-value=1e-06 Score=82.60 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEEEE----EeCCeEEEEeCC---CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCC--CeEE
Q 015066 96 NSELGTKVKGTVFC----TDNRGALVDITA---KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLV 166 (414)
Q Consensus 96 ~l~~G~iV~G~V~~----v~~~G~~Vdig~---k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~--~~i~ 166 (414)
.-+.|++|+|+|.+ ++++.++|++|. +.+|+||.+|+. +.+. |++|++++++|++++... .++.
T Consensus 4 ~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~-~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGES-YEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCC-CCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCcc-CCCCCEEEEEEEEEEcCCCCCEEE
Confidence 45799999999999 899999999987 699999999985 3344 899999999999998764 6899
Q ss_pred EEeeehhhhHHHHHh
Q 015066 167 LSLRMIQYELAWERC 181 (414)
Q Consensus 167 LS~k~~~~~~~~~~l 181 (414)
||+........|-.+
T Consensus 77 LSRt~p~lvk~Lfe~ 91 (251)
T 2asb_A 77 LSRTHPNLVRKLFSL 91 (251)
T ss_dssp EESSCHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHh
Confidence 999988776665544
No 67
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.37 E-value=9.3e-07 Score=81.70 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=60.6
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCcc----------ccCccCCcEEEEEEEEEeCCCC-
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE----------EAGIVPGLKEEFVIIGENEADD- 163 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~----------e~~~~vG~~v~v~Vl~id~~~~- 163 (414)
...++|++++|+|++++++|+||+++. .+|++|.++|++.+..++. +. +.+|+.|+|+|+++|.+.+
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~-~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCE-EETTCEEEEEEEEEEEETTE
T ss_pred eccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccE-ECCCCEEEEEEEEEEcCCCc
Confidence 456899999999999999999999998 9999999999764332221 34 8899999999999997665
Q ss_pred -eEEEEeeeh
Q 015066 164 -SLVLSLRMI 172 (414)
Q Consensus 164 -~i~LS~k~~ 172 (414)
..+-|++..
T Consensus 157 i~~IgSmk~~ 166 (215)
T 2b8k_G 157 IHAIGSIKED 166 (215)
T ss_dssp EEEEEECCST
T ss_pred cEEEEEcCCC
Confidence 223377654
No 68
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.34 E-value=6e-07 Score=83.20 Aligned_cols=64 Identities=8% Similarity=0.098 Sum_probs=53.8
Q ss_pred ccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccc--------------cCcccccCCCCEEEEEEEEEeCCC
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV--------------ADIATVLQPGDTLKVMILSHDRER 325 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~--------------~~~~~~~~~G~~V~vkVl~id~e~ 325 (414)
..+|+++.|+|+++++||+||++. .++|++|++++..+.+ .+-...|+.||.|++||.++|.+.
T Consensus 79 p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 79 PFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred CCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 568999999999999999999995 5899999999976543 334567999999999999999644
No 69
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.31 E-value=1.8e-06 Score=85.12 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=61.0
Q ss_pred cCCCCCEEEEEEEE----EeCCeEEEEeCC---CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCC--CeEE
Q 015066 96 NSELGTKVKGTVFC----TDNRGALVDITA---KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLV 166 (414)
Q Consensus 96 ~l~~G~iV~G~V~~----v~~~G~~Vdig~---k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~--~~i~ 166 (414)
.-+.|++|+|+|.+ ++++++||++|. +.+|+||.+|+. +.+. |++|++++|+|++++... .++.
T Consensus 127 ~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~-~~~GDrVkvyV~~V~~~~kgpqI~ 199 (366)
T 1k0r_A 127 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGES-YEHGNRLRCYVVGVTRGAREPLIT 199 (366)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCC-CCTTCEEEEEEEEEECCSSSCEEE
T ss_pred HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCcc-CCCCCEEEEEEEEEecCCCccEEE
Confidence 35699999999999 999999999987 699999999986 2344 899999999999998764 4688
Q ss_pred EEeeehhh
Q 015066 167 LSLRMIQY 174 (414)
Q Consensus 167 LS~k~~~~ 174 (414)
||+.....
T Consensus 200 LSRT~p~l 207 (366)
T 1k0r_A 200 LSRTHPNL 207 (366)
T ss_dssp EESSCHHH
T ss_pred EEeCChHH
Confidence 88876654
No 70
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.29 E-value=1.7e-06 Score=77.11 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=57.6
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCcc-----------ccCccCCcEEEEEEEEEeCCCC
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE-----------EAGIVPGLKEEFVIIGENEADD 163 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~-----------e~~~~vG~~v~v~Vl~id~~~~ 163 (414)
+...+|++++|+|++++++|+||+++. .+|++|.+++++.+..++. ...+.+|+.|+|+|+++|.+.+
T Consensus 77 ~~~~~Gev~~G~V~~v~~fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 77 FRPFKGEVVDAVVTQVNKVGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred eeCCCCCEEEEEEEEEeCCEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 456899999999999999999999975 6799999999754321111 1128899999999999987655
Q ss_pred e--EEEEeee
Q 015066 164 S--LVLSLRM 171 (414)
Q Consensus 164 ~--i~LS~k~ 171 (414)
. .+.|++.
T Consensus 156 ~~~~igsm~~ 165 (172)
T 2c35_B 156 DIFAIGSLMD 165 (172)
T ss_dssp EEEEEEECCS
T ss_pred CcEEEEEecC
Confidence 1 3336553
No 71
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.28 E-value=6.8e-07 Score=97.13 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=52.0
Q ss_pred EEEEEEEEEEeeceEEEEEC--CEEEEEeecccC--cccc-----------cC----cccccCCCCEEEEEEEEEeCC--
Q 015066 266 SVVIGTVQSLKPYGAFIDIG--GINGLLHVSQIS--HDRV-----------AD----IATVLQPGDTLKVMILSHDRE-- 324 (414)
Q Consensus 266 ~iv~g~V~~i~~~G~fV~l~--gv~Glvh~sels--~~~~-----------~~----~~~~~~~G~~V~vkVl~id~e-- 324 (414)
+++.|+|+++.+||+||.|. |++|+||+++++ .+++ .+ ....|++||+|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 79999999999999999997 899999999996 3321 22 257899999999999999988
Q ss_pred -CCeEEEEEe
Q 015066 325 -RGRVSLSTK 333 (414)
Q Consensus 325 -~~ri~LS~K 333 (414)
++||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999987
No 72
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.5e-07 Score=98.47 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred cEEEEEEEEEEeeceEEEEEC--CEEEEEeecccC--cccc-----------cC----cccccCCCCEEEEEEEEEeCC-
Q 015066 265 GSVVIGTVQSLKPYGAFIDIG--GINGLLHVSQIS--HDRV-----------AD----IATVLQPGDTLKVMILSHDRE- 324 (414)
Q Consensus 265 G~iv~g~V~~i~~~G~fV~l~--gv~Glvh~sels--~~~~-----------~~----~~~~~~~G~~V~vkVl~id~e- 324 (414)
|+++.|+|++|.+||+||.|. |++|+||+++|+ .+++ .+ ....|++||+|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 899999999999999999996 799999999997 3321 22 357899999999999999874
Q ss_pred --CCeEEEEEe
Q 015066 325 --RGRVSLSTK 333 (414)
Q Consensus 325 --~~ri~LS~K 333 (414)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999997
No 73
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.19 E-value=7.6e-07 Score=79.54 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=54.1
Q ss_pred cCCeEEEEEEEEEecCcEEEEECCEEEEEeccccCCC--Cccc----------c--ccCCeEEEEEEEeecccc---eEE
Q 015066 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAE----------E--LLGKDLPLKFVEVDEEQS---RLV 248 (414)
Q Consensus 186 ~~g~iv~G~V~~v~~~G~~V~i~gi~GfIp~sels~~--~~~~----------~--~vGq~V~vkVl~vD~e~~---ri~ 248 (414)
..|++++|+|++++++|+||+++.++||+|.|++++. ++.. . .+|++|++||+++|.+.+ ++.
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~Ig 162 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFAIA 162 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceEEE
Confidence 3578999999999999999999988999999999754 2221 1 279999999999998774 344
Q ss_pred eehhh
Q 015066 249 LSNRK 253 (414)
Q Consensus 249 LS~K~ 253 (414)
|+|+
T Consensus 163 -tm~~ 166 (172)
T 3h0g_G 163 -TMKE 166 (172)
T ss_dssp -ECCS
T ss_pred -EcCC
Confidence 6654
No 74
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.19 E-value=1e-06 Score=85.54 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=61.2
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcc----ccc------CcccccCCCCEEEEEEEEEeCCCCeEE
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD----RVA------DIATVLQPGDTLKVMILSHDRERGRVS 329 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~----~~~------~~~~~~~~G~~V~vkVl~id~e~~ri~ 329 (414)
.+++|++|.|+|+.+.++|+||+|+ ...|++|+|+++.. |.. +..+.|++||.|.|+|++++. .+++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEE
Confidence 5789999999999999999999999 58999999998752 222 344789999999999999994 67899
Q ss_pred EEEee
Q 015066 330 LSTKK 334 (414)
Q Consensus 330 LS~K~ 334 (414)
||+|+
T Consensus 171 LStr~ 175 (308)
T 2nn6_H 171 LHTRS 175 (308)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99985
No 75
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.15 E-value=2.6e-06 Score=84.06 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=58.2
Q ss_pred hhcc--ccEEEEEEEEE----EeeceEEEEECC----EEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEE
Q 015066 260 AQLG--IGSVVIGTVQS----LKPYGAFIDIGG----INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVS 329 (414)
Q Consensus 260 ~~l~--~G~iv~g~V~~----i~~~G~fV~l~g----v~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~ 329 (414)
++++ +|++|+|+|.+ +.++++||++++ ++|++|.+|+. |.+.|++||+|+|.|++++.+.+...
T Consensus 124 ~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpq 197 (366)
T 1k0r_A 124 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPL 197 (366)
T ss_dssp ---CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCE
T ss_pred HHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccE
Confidence 4555 99999999999 999999999996 99999999986 45899999999999999998765555
Q ss_pred EEEeeCC
Q 015066 330 LSTKKLE 336 (414)
Q Consensus 330 LS~K~~~ 336 (414)
+.+....
T Consensus 198 I~LSRT~ 204 (366)
T 1k0r_A 198 ITLSRTH 204 (366)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 5554443
No 76
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.06 E-value=6.4e-06 Score=67.03 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCCCEEEEEEEEEeC---CeEEEEeC-CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeeh
Q 015066 97 SELGTKVKGTVFCTDN---RGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (414)
Q Consensus 97 l~~G~iV~G~V~~v~~---~G~~Vdig-~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~ 172 (414)
.+.++.++|+|...+. +| |+... ++.+.|+|.+.+.... +
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~--------~--------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA--------A--------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS--------C---------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC--------c---------------------------
Confidence 4567889999999854 56 66654 4589999999885321 1
Q ss_pred hhhHHHHHhhhcccCCeEEEEEEEEEecCcEEEEEC-CEEEEEeccccCCCC
Q 015066 173 QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSKS 223 (414)
Q Consensus 173 ~~~~~~~~l~~~~~~g~iv~G~V~~v~~~G~~V~i~-gi~GfIp~sels~~~ 223 (414)
+......|+.++++|..++++|+||.+. +++||||.|+++|..
T Consensus 55 --------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~ 98 (101)
T 2bh8_A 55 --------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQ 98 (101)
T ss_dssp --------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECC
T ss_pred --------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCc
Confidence 0112356889999999999999999995 999999999999753
No 77
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.97 E-value=1.1e-05 Score=72.14 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=60.2
Q ss_pred ccccEEEEEEEEEEeeceEEEEECC--EEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIGG--INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLS 331 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~g--v~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS 331 (414)
+++||+|.|.|+.+..++++|+++. ..|++|++.+.. ...+....|++||.|.|+|.+++. ...+.||
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Lt 74 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEK-ELEAEIE 74 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCT-TSCCEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecC-CCceEEE
Confidence 6789999999999999999999997 999999998863 345677889999999999999986 4688999
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.96 E-value=1.9e-05 Score=73.99 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=58.5
Q ss_pred cccEEEEEEEEE----EeeceEEEEECC----EEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCC--CeEEEEE
Q 015066 263 GIGSVVIGTVQS----LKPYGAFIDIGG----INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRER--GRVSLST 332 (414)
Q Consensus 263 ~~G~iv~g~V~~----i~~~G~fV~l~g----v~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~--~ri~LS~ 332 (414)
++|++|+|+|.+ +.+..+||+++. .+|+++.+|+. |.+.|++||+|+|.|++++.+. .+|.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 579999999999 888899999985 99999999975 5688999999999999999764 6899987
Q ss_pred ee
Q 015066 333 KK 334 (414)
Q Consensus 333 K~ 334 (414)
..
T Consensus 80 t~ 81 (251)
T 2asb_A 80 TH 81 (251)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 79
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.83 E-value=3.9e-05 Score=79.29 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEEEEEeCC--eEEEEeCCCeeEEEcCcccccccc---------CCccccCccCCcEEEEEEEEEeCCCCe
Q 015066 96 NSELGTKVKGTVFCTDNR--GALVDITAKSSAYLPTQEACIHKI---------KHVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~--G~~Vdig~k~~g~lp~sEls~~~~---------~~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
...+|.++.|+|.++.++ |+||++|.+..||+|.+|++..+. .++++. +++||++.|.|++....++.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~-lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDV-LREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGT-CCTTCEEEEEEEECCCTTCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhh-ccCCCEEEEEEEeeccccCC
Confidence 457899999999999998 999999999999999999975542 234455 88999999999997665555
Q ss_pred EEEEee
Q 015066 165 LVLSLR 170 (414)
Q Consensus 165 i~LS~k 170 (414)
..||..
T Consensus 121 a~lTt~ 126 (517)
T 2bx2_L 121 AALTTF 126 (517)
T ss_dssp CEEESS
T ss_pred ceEEee
Confidence 555554
No 80
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.62 E-value=0.00021 Score=76.23 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=60.2
Q ss_pred cCCCCC--EEEEEEEEEeCCeEEEEe-CCCeeEEEcCccccc--ccc-C---------CccccCccCCcEEEEEEEEEeC
Q 015066 96 NSELGT--KVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACI--HKI-K---------HVEEAGIVPGLKEEFVIIGENE 160 (414)
Q Consensus 96 ~l~~G~--iV~G~V~~v~~~G~~Vdi-g~k~~g~lp~sEls~--~~~-~---------~~~e~~~~vG~~v~v~Vl~id~ 160 (414)
.-++|+ .++|+|+++.++|+||.+ ..+.+|++|.+++++ .+. - +.... +++|+.|+|+|+++|.
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~-~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV-YKVTDVIDVTIAEVRM 633 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEE-EETTCEEEEEEEEEET
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCE-eCCCCEEEEEEEEEeC
Confidence 447899 999999999999999999 467999999999963 210 0 12233 8899999999999999
Q ss_pred CCCeEEEEe
Q 015066 161 ADDSLVLSL 169 (414)
Q Consensus 161 ~~~~i~LS~ 169 (414)
..+++.+++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999986
No 81
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.52 E-value=0.0003 Score=62.70 Aligned_cols=72 Identities=13% Similarity=0.003 Sum_probs=59.1
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEe
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSL 169 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~ 169 (414)
|..++||+|.|+|+.+..++++|+|+. ...|+||.+.+.. ..+..... +.+||.|.++|..++. ++.+.||+
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~-l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPT-LQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCC-CCTTCEEEEEEEECCT-TSCCEEES
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhcc-CCCCCEEEEEEEEecC-CCceEEEe
Confidence 367899999999999999999999998 7999999998752 22333333 8899999999999874 46788884
No 82
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.48 E-value=0.00014 Score=70.52 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccc-cc---C------CccccCccCCcEEEEEEEEEeCCCCe
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KI---K------HVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~-~~---~------~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
+..++|++|.|+|+.+..++++|+|+....|+++.+++++. .. . +..+. |.+||.|.++|++++ .++.
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~-l~vGDlV~ArVisv~-~~~~ 168 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF-LQEGDLISAEVQAVF-SDGA 168 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHH-SCSSCEECCEEEEEE-TTTE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhcc-CCCCCEEEEEEEEcC-CCCC
Confidence 46799999999999999999999999878999999988652 21 1 11133 899999999999998 4678
Q ss_pred EEEEeee
Q 015066 165 LVLSLRM 171 (414)
Q Consensus 165 i~LS~k~ 171 (414)
+.||.+.
T Consensus 169 i~LStr~ 175 (308)
T 2nn6_H 169 VSLHTRS 175 (308)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998874
No 83
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00068 Score=62.56 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=54.1
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc--------------CCccccCccCCcEEEEEEEEEeCC
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI--------------KHVEEAGIVPGLKEEFVIIGENEA 161 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~--------------~~~~e~~~~vG~~v~v~Vl~id~~ 161 (414)
...+|+++.|+|.+++++|+||.+.+..+|+++.+++..++. +.. ...+.+|+.|+|+|.+++..
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t-~~~~~~Gd~VrvrV~~v~~~ 156 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEET-KLYFDVNEKIRFRIEREVFV 156 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--C-EEEECTTCEEEEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccC-CcEEcCCCEEEEEEEEEEcc
Confidence 567899999999999999999999556899999999865432 111 22278999999999999876
Q ss_pred CCeE
Q 015066 162 DDSL 165 (414)
Q Consensus 162 ~~~i 165 (414)
++..
T Consensus 157 ~~~p 160 (218)
T 2ckz_B 157 DVKP 160 (218)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5533
No 84
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.24 E-value=0.00072 Score=61.71 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=52.5
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc-------------------CCccccCccCCcEEEEEEE
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-------------------KHVEEAGIVPGLKEEFVII 156 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~-------------------~~~~e~~~~vG~~v~v~Vl 156 (414)
...+|+++.|+|.++++.|+||+++ ..+|+++.+++...+. ++.. ..+.+|+.|+|+|+
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~-~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTE-LYFDIDEEIRFQIE 155 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEE-EECCTTCEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCC-cEEcCCCEEEEEEE
Confidence 4679999999999999999999996 5899999999865432 1212 23889999999999
Q ss_pred EEeCCCC
Q 015066 157 GENEADD 163 (414)
Q Consensus 157 ~id~~~~ 163 (414)
+++..+.
T Consensus 156 ~v~~~~~ 162 (203)
T 3ayh_B 156 SEDFVDI 162 (203)
T ss_dssp EEEECC-
T ss_pred EEEcccc
Confidence 9886443
No 85
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.11 E-value=0.00088 Score=72.77 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=50.1
Q ss_pred CEEEEEEEEEeCCeEEEEeCC-CeeEEEcCcccc--cccc-----------CC----ccccCccCCcEEEEEEEEEeCC-
Q 015066 101 TKVKGTVFCTDNRGALVDITA-KSSAYLPTQEAC--IHKI-----------KH----VEEAGIVPGLKEEFVIIGENEA- 161 (414)
Q Consensus 101 ~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls--~~~~-----------~~----~~e~~~~vG~~v~v~Vl~id~~- 161 (414)
+.+.|+|+++.++|+||.+.. +.+|++|.++++ ..+. .+ .... |++|++|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~-~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD-VYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEE-EETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcE-EecCCEEEEEEEEEECcc
Confidence 799999999999999999976 799999999995 3220 11 1233 88999999999999877
Q ss_pred --CCeEEEEee
Q 015066 162 --DDSLVLSLR 170 (414)
Q Consensus 162 --~~~i~LS~k 170 (414)
++++.||+|
T Consensus 750 ~~~~kI~lslk 760 (760)
T 2vnu_D 750 TSKRKAELLLK 760 (760)
T ss_dssp --CCEEEC---
T ss_pred ccCCcEEEEeC
Confidence 589999875
No 86
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.96 E-value=0.0011 Score=63.72 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=60.4
Q ss_pred hccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLST 332 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~ 332 (414)
-+++||+|.|+|+.+....+.|+|. -..|++|.+++. ....+....|++||.|.|+|++++. .....||+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEe
Confidence 4689999999999999999999998 588999999876 2345677889999999999999985 45788888
No 87
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0013 Score=73.06 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=56.8
Q ss_pred CCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCcccc--ccc---------c--CC----ccccCccCCcEEEEEEEEEeCC
Q 015066 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEAC--IHK---------I--KH----VEEAGIVPGLKEEFVIIGENEA 161 (414)
Q Consensus 100 G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls--~~~---------~--~~----~~e~~~~vG~~v~v~Vl~id~~ 161 (414)
|+.+.|+|+.+.++|+||.+.. +.+|++|.+++. ..+ + .+ .... +++|++|+|+|..++..
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~-~~lGD~V~VkV~~vd~~ 965 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD-VYVFDKVEVQVRSVMDP 965 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEE-EETTCEEEEEECCCCCS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcE-EccCCEEEEEEEEEcCc
Confidence 9999999999999999999976 799999999996 322 0 11 1233 88999999999998863
Q ss_pred ---CCeEEEEee
Q 015066 162 ---DDSLVLSLR 170 (414)
Q Consensus 162 ---~~~i~LS~k 170 (414)
++++.||+|
T Consensus 966 ~~~~~kI~Lslk 977 (977)
T 2wp8_J 966 ITSKRKAELLLK 977 (977)
T ss_dssp SSCCCCCCEEEC
T ss_pred ccCCCceEEEeC
Confidence 378999885
No 88
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.53 E-value=0.0051 Score=58.99 Aligned_cols=73 Identities=16% Similarity=-0.004 Sum_probs=59.5
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEee
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR 170 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k 170 (414)
+-.++||+|-|+|+++....+.|+|+....|+||.+++.- ..+...+. |.+||.|.++|++.+ ..+.+.||+-
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~G-atk~~r~~-f~~GDlV~ArV~s~~-~~~~~eLsc~ 195 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEG-ATKRNRPN-VQVGDLIYGQFVVAN-KDMEPEMVCI 195 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSC-CSSCSSSS-SCTTCEEEEEEEECC-TTSCCEEECS
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCc-chhhhhhh-cCCCCEEEEEEEEcC-CCCceEEEec
Confidence 4679999999999999999999999988889999987652 22333444 899999999999987 3456788873
No 89
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=94.67 E-value=0.045 Score=56.06 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=47.2
Q ss_pred cccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 015066 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLST 332 (414)
Q Consensus 263 ~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~ 332 (414)
.+|+.+.|.|.. +.+..|+||++++..+ -.....|+.||.|+|+|.++|..+++|.+..
T Consensus 402 ~~g~~f~g~vv~---------l~~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVD---------RRGAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEE---------EETTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEE---------EeCcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 578999988754 3355899999998765 2234579999999999999999999998865
No 90
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.31 Score=44.50 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCccccccccCCccc-----------cCccCCcEEEEEEEEEeCCCCe
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE-----------AGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~~~~~e-----------~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
...+|+++.|+|..+++.|+.+-+-+-..++||...+.....-++.+ ..-.+|++|+|+|.+++..++.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~~ 205 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRV 205 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSSS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCCE
Confidence 46899999999999999888775544577899999885432211111 1124699999999999864443
No 91
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.77 Score=41.79 Aligned_cols=69 Identities=16% Similarity=0.053 Sum_probs=48.9
Q ss_pred hccccEEEEEEEEEEeeceEEEEECC-EEEEEeecccCcccccCcc------------cccCCCCEEEEEEEEEeCCCCe
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIA------------TVLQPGDTLKVMILSHDRERGR 327 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~g-v~Glvh~sels~~~~~~~~------------~~~~~G~~V~vkVl~id~e~~r 327 (414)
.+.+|+++.|+|+.+.+.|+.+-+-| .+.+|+...|..++.-++. +.-++|+.|+.+|.+++.+++-
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~~ 205 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRV 205 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSSS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCCE
Confidence 47789999999999999777765544 7889999887533211111 1224699999999999875544
Q ss_pred EE
Q 015066 328 VS 329 (414)
Q Consensus 328 i~ 329 (414)
++
T Consensus 206 ls 207 (214)
T 2rf4_A 206 VS 207 (214)
T ss_dssp CE
T ss_pred EE
Confidence 33
No 92
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=88.40 E-value=0.94 Score=36.27 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=47.5
Q ss_pred ccccEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCcccc-----cC-cccccCCCCEEEEE
Q 015066 262 LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV-----AD-IATVLQPGDTLKVM 317 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~~~~-----~~-~~~~~~~G~~V~vk 317 (414)
...|+.+.+.|+++.+.++-|.+. |-.+.|..+.+.|-+- .. +++.+++||.|.|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 445889999999999999999996 6888899999998752 34 67789999999997
No 93
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=87.16 E-value=3.5 Score=32.81 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=46.3
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc-----CC-ccccCccCCcEEEEE
Q 015066 97 SELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-----KH-VEEAGIVPGLKEEFV 154 (414)
Q Consensus 97 l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~-----~~-~~e~~~~vG~~v~v~ 154 (414)
...|+.+.+.|+++.+.++.|.+.++..+.|+...|.+... +. +.+. +++|+.|.++
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~-l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKR-IRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGS-CCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhcc-CCCCCEEEEE
Confidence 45689999999999999999999777888899999987532 22 4444 8899999887
No 94
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=86.86 E-value=1.2 Score=34.82 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=46.3
Q ss_pred hhccccEEEEEEEEEEeeceEEEEEC---CEEEEEeec-ccCcccccCcccccCCCCEEEEEEEEEeC
Q 015066 260 AQLGIGSVVIGTVQSLKPYGAFIDIG---GINGLLHVS-QISHDRVADIATVLQPGDTLKVMILSHDR 323 (414)
Q Consensus 260 ~~l~~G~iv~g~V~~i~~~G~fV~l~---gv~Glvh~s-els~~~~~~~~~~~~~G~~V~vkVl~id~ 323 (414)
-++.+|++.+|.|. ++++-++|.|. |.++++--+ ++..++..++++.+ +|-+|+++|+.+|.
T Consensus 28 ~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 28 MDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred cccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 46889999999887 55777788885 688887543 34445555555553 79999999999984
No 95
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=85.55 E-value=8.1 Score=29.94 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred ccccEEEEEEEEEEeeceE-EEEEC--CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCC-eEEEEEeeCCC
Q 015066 262 LGIGSVVIGTVQSLKPYGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERG-RVSLSTKKLEP 337 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~-fV~l~--gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~-ri~LS~K~~~~ 337 (414)
+.......|+|+... .|. ||.-. +-+-++|++.|... ...+..||.|...+..-+ .++ .-...++.+.+
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~-k~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDR-RTGKPIAVKLVKISG 85 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECS-SSCCEEEEEEEESSC
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECC-CCCCcEEEEEEECCc
Confidence 344567899999985 555 77775 48999999998653 256889999999886533 224 34555555543
No 96
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=83.86 E-value=3 Score=42.43 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHHHhhcccCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEcCcccccccc
Q 015066 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137 (414)
Q Consensus 58 ~~l~~iiee~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~l~~G~iV~G~V~~v~~~G~~Vdig~k~~g~lp~sEls~~~~ 137 (414)
+.|.++++.+-.+-+.+.. -+.+....|......-..|+...|.|+.+.. ..|+++.+++....
T Consensus 367 ~~l~~~~~~~~~~er~a~~-----aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~----------~~glV~v~~l~~d~- 430 (469)
T 2r7d_A 367 KVMAAHIAESQMNADATRQ-----AERLSRRHHTLRFIAAQPERVWDAVVVDRRG----------AQATLLIPDLAFDV- 430 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCTTCCEEEEEEEEET----------TEEEEEEGGGTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCCEEEEEEEEEeC----------cEEEEEECCCCeEE-
Confidence 5566666655544443211 0112233332221233689999998876542 35666666665431
Q ss_pred CCccccCccCCcEEEEEEEEEeCCCCeEEEEe
Q 015066 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSL 169 (414)
Q Consensus 138 ~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~ 169 (414)
. .. ..+.+|+.|+++|.++|..++++.+..
T Consensus 431 ~-~~-~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 431 Q-VN-TPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp E-EE-CCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred e-cC-CcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 1 11 238899999999999999999887754
No 97
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=82.13 E-value=2.7 Score=35.10 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=40.3
Q ss_pred ccEEEEEEEEEEeeceEEEEECC-E--EEEEeecccCcccccCcccccCCCCEEEEEEE
Q 015066 264 IGSVVIGTVQSLKPYGAFIDIGG-I--NGLLHVSQISHDRVADIATVLQPGDTLKVMIL 319 (414)
Q Consensus 264 ~G~iv~g~V~~i~~~G~fV~l~g-v--~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl 319 (414)
.|.-|.|+|+.+.+.+++|.+.+ . +-.+|.+++..-.-......|.+||+|.|.--
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSR 72 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEEC
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEec
Confidence 38999999999999999999974 2 45778777754322223356899999998543
No 98
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=81.33 E-value=15 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=41.0
Q ss_pred EEEEEEEEee-ceE-EEEEC-C-EEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 268 VIGTVQSLKP-YGA-FIDIG-G-INGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 268 v~g~V~~i~~-~G~-fV~l~-g-v~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
.+|+|+...+ .|. ||.-. | -. ++|+|.|.... .++.||.|...+..- .++.-...++.+.
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~g--~kG~~A~~V~~~~ 66 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTTN--NKGLSAYAVKVVP 66 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEEC--SSSEEEEEEEECC
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEeC--CCCceeEEEEeCC
Confidence 5799998863 343 55554 4 56 99999996542 689999999888643 3555555555443
No 99
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=78.43 E-value=13 Score=27.91 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=38.9
Q ss_pred cEEEEEEEEEEee-ceE-EEEEC--CEEEEEeecccCcccccCcccccCCCCEEEEEEEE
Q 015066 265 GSVVIGTVQSLKP-YGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILS 320 (414)
Q Consensus 265 G~iv~g~V~~i~~-~G~-fV~l~--gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~ 320 (414)
...++|+|+...+ .|. ||.-. |-+-++|+|.|.......-...+..||.|...+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 4567899999864 333 55554 59999999999754111112457899999988764
No 100
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=78.23 E-value=2.5 Score=32.24 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=44.2
Q ss_pred EEEEEEEEEeeceEE-EEEC-CEEEEEeecc-cCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 015066 267 VVIGTVQSLKPYGAF-IDIG-GINGLLHVSQ-ISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLST 332 (414)
Q Consensus 267 iv~g~V~~i~~~G~f-V~l~-gv~Glvh~se-ls~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~ 332 (414)
.+.|+|....+.|.| |.+. |..=++|++= +...++ .+.+||.|.+-+-..|..+++|..-.
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEEc
Confidence 468999999976665 8887 7777888874 221122 26799999998887887777776543
No 101
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=77.35 E-value=3.9 Score=31.11 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=41.5
Q ss_pred eEEEEEEEEEecCcEE-EEEC-CEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEee
Q 015066 189 VVVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLS 250 (414)
Q Consensus 189 ~iv~G~V~~v~~~G~~-V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS 250 (414)
-.++|+|++...+|.| |.+. |..-.++.+=-.......-++|+.|.+.+...|..+++|+.-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 3688999999977765 8886 644444433211112233457999999988888888888753
No 102
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=77.34 E-value=5.1 Score=31.59 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=48.3
Q ss_pred cEEEEEEEEEEeeceE-EEEEC--CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCCC--CC
Q 015066 265 GSVVIGTVQSLKPYGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEP--TP 339 (414)
Q Consensus 265 G~iv~g~V~~i~~~G~-fV~l~--gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~~--~p 339 (414)
.....|+|+.. ..|. ||.-. +-+-++|+|.|... ...+..||.|...+. +..++.-...++.+.. -.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~--~~~~g~~A~~V~~~~~~~~~ 87 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK--DRNGKEVATDVRLLPQGTVI 87 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC--CCSSSCBEEEEEECCCSSCC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE--cCCCCcEEEEEEECCCCccc
Confidence 45688999988 5555 77665 48999999999754 246899999999884 3334434444444432 23
Q ss_pred CcccCCc
Q 015066 340 GDMIRNP 346 (414)
Q Consensus 340 ~~~~~~~ 346 (414)
++.+..|
T Consensus 88 ~e~~~~~ 94 (97)
T 2ytx_A 88 FEDISGP 94 (97)
T ss_dssp CCSCCSC
T ss_pred eeeccCC
Confidence 4444444
No 103
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.54 E-value=6.1 Score=32.88 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=56.7
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCe--eEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhh
Q 015066 98 ELGTKVKGTVFCTDNRGALVDITAKS--SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175 (414)
Q Consensus 98 ~~G~iV~G~V~~v~~~G~~Vdig~k~--~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~ 175 (414)
..|.-.+|+|..+..++++|.+.+.. +-.+|.+++-...... .+..|.+|++|++.--. +..
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~-~~~~f~~gd~VEV~~~~----~d~----------- 76 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPAD-YNKEITEGDEVEVYSRA----NEQ----------- 76 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC-----CCCTTCEEEEEECC------------------
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcc-cccCCCCCCEEEEEecC----CCC-----------
Confidence 56999999999999999999997643 3577777776543322 22348899998885421 110
Q ss_pred HHHHHhhhcccCCeEEEEEEEEEecCcEEEEECC
Q 015066 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG 209 (414)
Q Consensus 176 ~~~~~l~~~~~~g~iv~G~V~~v~~~G~~V~i~g 209 (414)
...| -..|+|+++...=++|...|
T Consensus 77 ---------ep~g-Ww~a~I~~~kg~f~~V~y~~ 100 (128)
T 3h8z_A 77 ---------EPCG-WWLARVRMMKGDFYVIEYAA 100 (128)
T ss_dssp ---------CCCE-EEEEEEEEEETTEEEEEETT
T ss_pred ---------CcCc-cEEEEEEEeeCCEEEEEEcC
Confidence 0123 78889988875555677644
No 104
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=76.31 E-value=16 Score=28.23 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=41.7
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 96 NSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
........+|+|...++..=|+.-.. ..+-|+|.+.+... .+ .+..|++|+|.+..
T Consensus 12 ~~s~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~-~~-----~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 12 GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN-LQ-----DLKVGDDVEFEVSS 68 (89)
T ss_dssp SSSCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC-TT-----TCCTTCCEEEEEEE
T ss_pred CCCcccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc-cC-----CCCCCCEEEEEEEE
Confidence 34555789999999987555666654 48999999998643 11 26789999999966
No 105
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=74.84 E-value=4.2 Score=31.51 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=36.6
Q ss_pred CCeEEEEEEEEEecC-cEEEEEC-CEEEEEeccccCCCCccccccCCeEEEEEE
Q 015066 187 EDVVVKGKVVGANKG-GVVAEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFV 238 (414)
Q Consensus 187 ~g~iv~G~V~~v~~~-G~~V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl 238 (414)
.++..+|+|+..+++ |++..-+ +-+.|+|+|.+.... ..-..||.|.+.+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~~-~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDV-DSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSCT-TTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhcccc-CcCCCCCEEEEEEE
Confidence 356789999999864 4444333 689999999998652 22237999998764
No 106
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=74.38 E-value=12 Score=31.76 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=47.0
Q ss_pred cccEEEEEEEEEEee-ceE-EEEEC--CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEe-CCCCeEEEEEeeCCC
Q 015066 263 GIGSVVIGTVQSLKP-YGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD-RERGRVSLSTKKLEP 337 (414)
Q Consensus 263 ~~G~iv~g~V~~i~~-~G~-fV~l~--gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id-~e~~ri~LS~K~~~~ 337 (414)
..|....|+|+.... .|. ||.-. |-+-|+|+|.|... ..+..||.|...+.... ..++.-...++.+..
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~~~ 131 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHL 131 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC--CCSCEEEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEeccCCCCCceEEEEEeCCC
Confidence 357789999999863 343 56654 48999999998632 26899999998886532 334434444444443
Q ss_pred CC
Q 015066 338 TP 339 (414)
Q Consensus 338 ~p 339 (414)
.|
T Consensus 132 ~p 133 (147)
T 3aqq_A 132 AP 133 (147)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 107
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=73.38 E-value=51 Score=29.51 Aligned_cols=136 Identities=10% Similarity=0.016 Sum_probs=85.8
Q ss_pred ccCCcEEEEEEEEEeCCCCeEEEEeeehhh----hHHHHHhhhc--------------------c-cCCeEEEEEEEEEe
Q 015066 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQY----ELAWERCRQL--------------------Q-SEDVVVKGKVVGAN 199 (414)
Q Consensus 145 ~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~----~~~~~~l~~~--------------------~-~~g~iv~G~V~~v~ 199 (414)
+.+|+.+++.|..+.. -+.+.+-+..... ...-..+.+. + ..|....|.|.++.
T Consensus 13 l~~~~~~~V~Vt~v~s-P~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~ 91 (226)
T 4b9x_A 13 FTVDETVDVVVCMMYS-PGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (226)
T ss_dssp CCTTCEEEEEEEEEEE-TTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEEeC-CCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 7889999999999975 4566665432211 1111111110 1 23567899999997
Q ss_pred cCc-EEEEE-C-CEEEEEeccccCCC-CccccccCCeEEEEEEEeecccceEEeehhhhhhhHHhhccccEEEEEEEEEE
Q 015066 200 KGG-VVAEV-E-GLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275 (414)
Q Consensus 200 ~~G-~~V~i-~-gi~GfIp~sels~~-~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~~~~l~~G~iv~g~V~~i 275 (414)
..| +.|.+ + |-...+|.++|-.- .....+-.|-++|+.-.+.+.++. -| ....+.+.++-.|..+.++|..+
T Consensus 92 ~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~--w~--~ea~~~f~~l~~~k~l~~~V~~~ 167 (226)
T 4b9x_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH--WT--KEATARFQACVVGLKLQARVVEI 167 (226)
T ss_dssp SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECSSSS--CC--HHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECCCCC--CC--HHHHHHHHHHHCCCeEEEEEEEE
Confidence 665 44554 3 77888999887643 222233578899988777654332 11 11123345666788999999999
Q ss_pred eeceEEEEEC
Q 015066 276 KPYGAFIDIG 285 (414)
Q Consensus 276 ~~~G~fV~l~ 285 (414)
.+.++.|.|.
T Consensus 168 ~~~~~~V~L~ 177 (226)
T 4b9x_A 168 TANGVGVELT 177 (226)
T ss_dssp CSSCEEEEEE
T ss_pred eCCeEEEEEE
Confidence 9988888873
No 108
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=72.56 E-value=21 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=35.1
Q ss_pred EEEEEEEEeC--CeEEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 103 VKGTVFCTDN--RGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 103 V~G~V~~v~~--~G~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
.+|+|...+. +.=|+.- +++.+-|+|.+.+.....+. +..|+.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 54 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKT-----LKEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSS-----CCTTCEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCC-----CCCCCEEEEEEEE
Confidence 3799999875 3334444 44688999999986432222 6789999999865
No 109
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=71.42 E-value=24 Score=25.90 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=35.8
Q ss_pred EEEEEEEEEeC--CeEEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 102 KVKGTVFCTDN--RGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 102 iV~G~V~~v~~--~G~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
..+|+|...+. +.=|+.- +++.+-|+|.+.+.....+ .+..|+.|++.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~-----~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFK-----TLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCC-----CCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCc-----CCCCCCEEEEEEEE
Confidence 47899999875 2234444 4447899999998643222 15789999999865
No 110
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=68.63 E-value=11 Score=29.04 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 99 LGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 99 ~G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
.++..+|+|...+++.=|+.-.+ +.+-|+|.+.+... .+ .+..|+.|++.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-~~-----~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-VD-----SLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-TT-----TCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-cC-----cCCCCCEEEEEEEE
Confidence 57889999999998666776643 58999999988643 11 26789999998853
No 111
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=67.67 E-value=12 Score=31.64 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=48.2
Q ss_pred EEEEEEEEEEeeceEE-EEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 015066 266 SVVIGTVQSLKPYGAF-IDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTK 333 (414)
Q Consensus 266 ~iv~g~V~~i~~~G~f-V~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K 333 (414)
..+.|+|+...+.+.| |.+. |..-|+|++-= ... .--+..||.|.|-....|..+++|..-++
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~nG~~~La~I~GK----mRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~ 95 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK----LRK-KVWINTSDIILVGLRDYQDNKADVILKYN 95 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETTTEEEEEECCSG----GGG-SCCCCTTCEEEEECSSSSSSCCEEEEEEC
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccc----cee-eEEecCCCEEEEeeccCCCCeEEEEEEeC
Confidence 4588999999998887 7787 89999998741 222 33478999999988777777777776665
No 112
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=67.66 E-value=22 Score=26.26 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=36.0
Q ss_pred EEEEEEEEee-ceE-EEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEE
Q 015066 268 VIGTVQSLKP-YGA-FIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSH 321 (414)
Q Consensus 268 v~g~V~~i~~-~G~-fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~i 321 (414)
.+|+|+...+ .|. ||.-. |-+-++|+|.|.... ...+..||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKG----FRTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSS----CSSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccC----CCCCCCCCEEEEEEEEC
Confidence 4789998874 343 56554 788999999996542 23578999999877543
No 113
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=65.14 E-value=35 Score=25.28 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=42.0
Q ss_pred EEEEEEEee-ceE-EEEEC-CEEEEEeecccC-cccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 269 IGTVQSLKP-YGA-FIDIG-GINGLLHVSQIS-HDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 269 ~g~V~~i~~-~G~-fV~l~-gv~Glvh~sels-~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
+|+|+...+ .|. ||.-. |-+-++|+|.|. .... ..+..||.|...+.. -+++.-....+.++
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~--g~kG~~A~~V~~~~ 67 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP--TPKGLAAKAISLPL 67 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC--TTTSCEEEEEECCS
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE--CCCCceeEEEEEcC
Confidence 689998864 333 55655 789999999997 4321 357899999987753 23555555555544
No 114
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=64.63 E-value=37 Score=24.51 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=36.1
Q ss_pred EEEEEEEEee-ceE-EEEEC--CEEEEEeecccCcccccCcccccCCCCEEEEEEEEE
Q 015066 268 VIGTVQSLKP-YGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSH 321 (414)
Q Consensus 268 v~g~V~~i~~-~G~-fV~l~--gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~i 321 (414)
.+|+|+...+ .|. ||.-. |-+-++|+|.|...- ...+..||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEG----FKTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGG----GSSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccC----CCCCCCCCEEEEEEEEC
Confidence 3689998864 343 55554 589999999996532 23578999999887654
No 115
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=64.48 E-value=23 Score=26.53 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=37.5
Q ss_pred CCEEEEEEEEEeC---CeEEEEeCCCeeEEEcCccccccccC-CccccCccCCcEEEEEEEE
Q 015066 100 GTKVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIK-HVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 100 G~iV~G~V~~v~~---~G~~Vdig~k~~g~lp~sEls~~~~~-~~~e~~~~vG~~v~v~Vl~ 157 (414)
....+|+|...+. +|.+..-+++.+-|+|.+.+...... ... .+..|+.|++.+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~--~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR--SVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSC--SCCSSCEEEEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccc--cCCCCCEEEEEEEE
Confidence 3467899999975 34444334468999999998643111 111 26789999999865
No 116
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=64.47 E-value=73 Score=27.85 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=84.5
Q ss_pred ccCCcEEEEEEEEEeCCCCeEEEEeeehhh----hHHHHHhhh--------------------cc-cCCeEEEEEEEEEe
Q 015066 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQY----ELAWERCRQ--------------------LQ-SEDVVVKGKVVGAN 199 (414)
Q Consensus 145 ~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~----~~~~~~l~~--------------------~~-~~g~iv~G~V~~v~ 199 (414)
+.+|+.+++.|..+.. -+.+.+-+..... ......+.+ .+ ..|....|+|.++.
T Consensus 13 l~~~~~~~V~Vt~v~s-P~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~~ 91 (201)
T 4b9w_A 13 FTVDETVDVVVCMMYS-PGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (201)
T ss_dssp CCTTCEEEEEEEEEEE-TTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEEeC-CCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 7889999999999975 4566665432211 111111111 01 23567899999997
Q ss_pred cCc-EEEEE-C-CEEEEEeccccCCC-CccccccCCeEEEEEEEeecccceEEeehhhhhhhHHhhccccEEEEEEEEEE
Q 015066 200 KGG-VVAEV-E-GLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275 (414)
Q Consensus 200 ~~G-~~V~i-~-gi~GfIp~sels~~-~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~~~~l~~G~iv~g~V~~i 275 (414)
..+ +.|.+ + |-...+|.+++-.- .....+..|-++|+.-.+.+.++. -| ....+...++-.|..+.++|..+
T Consensus 92 ~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~--w~--~ea~~~f~~l~~~k~l~~~V~~~ 167 (201)
T 4b9w_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH--WT--KEATARFQACVVGLKLQARVVEI 167 (201)
T ss_dssp TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECSSSS--CC--HHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcCCCC--CC--HHHHHHHHHHHCCCEEEEEEEEE
Confidence 665 55655 4 77888998887632 222233578899988777654332 11 11123345566788899999999
Q ss_pred eeceEEEEE
Q 015066 276 KPYGAFIDI 284 (414)
Q Consensus 276 ~~~G~fV~l 284 (414)
.+.+..|.|
T Consensus 168 ~~~~~~V~L 176 (201)
T 4b9w_A 168 TANGVGVEL 176 (201)
T ss_dssp ETTEEEEEE
T ss_pred eCCEEEEEE
Confidence 888888876
No 117
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=63.73 E-value=42 Score=24.82 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=36.2
Q ss_pred EEEEEEEEEeC--CeEEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCe
Q 015066 102 KVKGTVFCTDN--RGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 102 iV~G~V~~v~~--~G~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
..+|+|...+. +.=|+.- +++.. |++.+.+.... .+..|+.|+|.+.. ..+|.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g-------~l~~G~~V~F~~~~--g~kG~ 57 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD-------LIKKDAAVTFEPTT--NNKGL 57 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG-------GCCTTCEEEEEEEE--CSSSE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC-------CCCCCCEEEEEEEe--CCCCc
Confidence 36899999875 3334444 44456 99999986432 26899999999865 34553
No 118
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=63.59 E-value=17 Score=26.70 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=34.6
Q ss_pred EEEEEEEEEec---CcEEEEEC-CEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 190 VVKGKVVGANK---GGVVAEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 190 iv~G~V~~v~~---~G~~V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
..+|+|+..+. +|++..-+ +-+.|+|.|.+....-.....|+.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEE
Confidence 46899999963 35544434 4899999999985321122379999998755
No 119
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=62.29 E-value=26 Score=29.73 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=38.6
Q ss_pred CCCEEEEEEEEEeC--CeEEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEE
Q 015066 99 LGTKVKGTVFCTDN--RGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158 (414)
Q Consensus 99 ~G~iV~G~V~~v~~--~G~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~i 158 (414)
.|...+|+|...+. +.-|+.- +++.+.|+|.+.+... . .+..|+.|+|.+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~-----~--~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE-----Y--VPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS-----B--CCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC-----C--cCCCCCEEEEEEEec
Confidence 46789999999865 3335544 4458899999998522 1 278899999999753
No 120
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=61.08 E-value=24 Score=25.38 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=33.8
Q ss_pred EEEEEEEEec---CcEEEEECCEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 191 VKGKVVGANK---GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 191 v~G~V~~v~~---~G~~V~i~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
.+|+|+..+. +|++..-+|-+.|+|.|.+....-.....|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEE
Confidence 3689999863 255444347899999999985421122379999998754
No 121
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.17 E-value=14 Score=29.88 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred ccccEEEEEEEEEEeeceEE-EEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEe-CCCCeEEEEEe
Q 015066 262 LGIGSVVIGTVQSLKPYGAF-IDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD-RERGRVSLSTK 333 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~f-V~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id-~e~~ri~LS~K 333 (414)
+..| .+.|+|+.....+.| |.+. |..-|+|++- +..+ .--+..||.|.|-....| ..+++|..-++
T Consensus 12 p~eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~i~G----K~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 12 PSNQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPS----KYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp CCSS-CEEEEEEECCSSSEEEEECTTSCEEEEECCT----TCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CCCC-eEEEEEEEeCCCCEEEEEeCCCCEEEEEech----hhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 3344 478899999988887 7776 8999999874 2222 334789999999877665 45566655544
No 122
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=58.47 E-value=40 Score=26.24 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=41.2
Q ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCC--CeeEEEcCc-cccccccCCccccCccCCcEEEEEEEEEeC
Q 015066 95 FNSELGTKVKGTVFCTDNRGALVDITA--KSSAYLPTQ-EACIHKIKHVEEAGIVPGLKEEFVIIGENE 160 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~Vdig~--k~~g~lp~s-Els~~~~~~~~e~~~~vG~~v~v~Vl~id~ 160 (414)
.++-+|++.+|.|.- .++-++|.+.+ +.+|++-.. .+..+...+..+. .+|..+.++|+..|.
T Consensus 28 ~~~~~g~VtkGiVy~-kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkk--LVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 28 MDLSPGSVHEGIVYF-KDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER--LVGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCSSCEEEEEEEE-ETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH--HTTCEEEEEEEEECS
T ss_pred cccCCCceEeeEEEE-eCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHH--hcCceEEEEEEEecc
Confidence 378899999998764 44566787744 477776432 2222222333332 479999999999874
No 123
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=54.90 E-value=33 Score=28.96 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred eEEEEEEEEEec---CcEEEEE--------CCEEEEEeccccCCCCccccccCCeEEEEEEEe
Q 015066 189 VVVKGKVVGANK---GGVVAEV--------EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240 (414)
Q Consensus 189 ~iv~G~V~~v~~---~G~~V~i--------~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~v 240 (414)
...+|+|+..+. +|++..- ++-+.|+|.|.|....-.....|+.|.+.|..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEc
Confidence 467899999953 3666543 368999999999743211223699999987654
No 124
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=54.81 E-value=56 Score=23.38 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=35.2
Q ss_pred EEEEEEEEeC--CeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 103 VKGTVFCTDN--RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 103 V~G~V~~v~~--~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
.+|+|...+. +.=|+.-.++.+-|+|.+.+.....+. +..|+.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKT-----LEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCC-----CCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCC-----CCCCCEEEEEEEE
Confidence 3799999875 334555544488999999986432222 5789999999865
No 125
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=54.66 E-value=42 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=34.4
Q ss_pred EEEEEEEeC--CeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 104 KGTVFCTDN--RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 104 ~G~V~~v~~--~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
+|+|...+. +.=|+.-.++.+-|+|.+.+.....+. +..|+.|++.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKT-----LKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCC-----CCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCC-----CCCCCEEEEEEEE
Confidence 589999875 334555555588999999886432222 6789999998854
No 126
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=54.46 E-value=58 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=36.8
Q ss_pred EEEEEEEeC--CeEEEEeCCCeeEEEcCcccc-ccccCCccccCccCCcEEEEEEEEEeCCCCe
Q 015066 104 KGTVFCTDN--RGALVDITAKSSAYLPTQEAC-IHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (414)
Q Consensus 104 ~G~V~~v~~--~G~~Vdig~k~~g~lp~sEls-~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~ 164 (414)
+|+|...+. +.-|+.-.++.+-|++.+.+. ....+. +..|+.|++.+.. ..+|.
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~-----l~~G~~V~F~~~~--g~kG~ 58 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGK-----LVKGSMVHFDPTP--TPKGL 58 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTT-----CCTTSEEEEEEEC--TTTSC
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCC-----CCCCCEEEEEEEE--CCCCc
Confidence 699999875 334555544488999999886 332222 6789999999854 34554
No 127
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=53.89 E-value=73 Score=24.50 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.6
Q ss_pred eEEEEEEEEEec---CcEEEE--------ECCEEEEEeccccCCCCccccccCCeEEEEEEEe
Q 015066 189 VVVKGKVVGANK---GGVVAE--------VEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240 (414)
Q Consensus 189 ~iv~G~V~~v~~---~G~~V~--------i~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~v 240 (414)
...+|+|+-.+. +|++.. =++-+.|+|.|.|...--..-..||.|.+.|..=
T Consensus 7 ~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 7 LRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCCCCTTCEEEEEEEEE
T ss_pred cccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCccCCCCEEEEEEEEC
Confidence 467899999853 355542 1367999999999643211122599999987653
No 128
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=51.44 E-value=69 Score=23.44 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=35.4
Q ss_pred EEEEEEEEeC--CeEEEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 103 VKGTVFCTDN--RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 103 V~G~V~~v~~--~G~~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
.+|+|...+. +.=|+.-.++.+-|+|.+.+.....+. +..|+.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRT-----LNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCSS-----CCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCCCC-----CCCCCEEEEEEEE
Confidence 3799999875 334555554588999999886432222 5789999999865
No 129
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=48.22 E-value=30 Score=27.03 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCEEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEE
Q 015066 99 LGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156 (414)
Q Consensus 99 ~G~iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl 156 (414)
.....+|+|....++.=|+.-.+ ..+-|+|.+.+... .+ .+..|+.|+|.+.
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~-~~-----~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGD-LE-----TLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSC-TT-----SCCSCCEEEEEEC
T ss_pred CCcceeEEEEEEeCCceEEecCCCCceEEEEehHhccc-cC-----CCCCCCEEEEEEE
Confidence 35778999999855545666543 47899999998643 11 2678999999984
No 130
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=48.14 E-value=55 Score=25.25 Aligned_cols=52 Identities=8% Similarity=0.131 Sum_probs=35.3
Q ss_pred CEEEEEEEEEeC--CeEEEEe--------CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 101 TKVKGTVFCTDN--RGALVDI--------TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 101 ~iV~G~V~~v~~--~G~~Vdi--------g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
...+|+|...+. ..=|+.. .++.+-|+|.+.+.....+. +..|+.|+|.|..
T Consensus 7 ~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~-----L~eG~~V~f~v~~ 68 (90)
T 3ulj_A 7 LRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRS-----LKEGEPVEFTFKK 68 (90)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCC-----CCTTCEEEEEEEE
T ss_pred cccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCc-----cCCCCEEEEEEEE
Confidence 357899999875 2334432 23467899999885433222 5789999999865
No 131
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=45.71 E-value=15 Score=27.74 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=37.5
Q ss_pred CEEEEEEEEEeCCeEEEEeCC--CeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 101 TKVKGTVFCTDNRGALVDITA--KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 101 ~iV~G~V~~v~~~G~~Vdig~--k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
....|+|....+..=|+.-.. +.+-|+|.+.+. .. . .+..|+.|+|.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~g-~-----~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-DG-I-----ELQAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-SS-C-----CCCTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-CC-C-----cCCCCCEEEEEEEE
Confidence 456899999988666776543 378999999986 22 1 26789999999865
No 132
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=44.36 E-value=16 Score=26.33 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=32.8
Q ss_pred EEEEEEEec---CcEEEEECCEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 192 KGKVVGANK---GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 192 ~G~V~~v~~---~G~~V~i~gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
+|+|+..+. +|++..-+|-+.|+|.|.+....-.....|+.|.+.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCCCCCCCEEEEEEEE
Confidence 588999863 355544358899999999985421122379999987643
No 133
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=44.03 E-value=62 Score=27.20 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=36.8
Q ss_pred CEEEEEEEEEeC--CeEEEEeC--------CCeeEEEcCccccccccCCccccCccCCcEEEEEEEEE
Q 015066 101 TKVKGTVFCTDN--RGALVDIT--------AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158 (414)
Q Consensus 101 ~iV~G~V~~v~~--~G~~Vdig--------~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~i 158 (414)
..++|+|...+. ..-|+.-. ++.+.|+|.+.+.....+. +..|+.|+|.|..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~-----l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRS-----LKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCC-----CCTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCcc-----CCCCCEEEEEEEEc
Confidence 457899999875 23344432 4578999999885433222 57899999999763
No 134
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=48.71 E-value=5.2 Score=29.48 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=34.4
Q ss_pred EEEEEEEEEec---CcEEEEEC-CEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 190 VVKGKVVGANK---GGVVAEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 190 iv~G~V~~v~~---~G~~V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
.++|+|+..+. +|++..-+ +-+.|+|.|.+....-.....|+.|.+.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEE 57 (70)
Confidence 57789998853 56665544 6899999999975321112369999987643
No 135
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=42.53 E-value=40 Score=23.87 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.7
Q ss_pred cccEEEEEEEEEEeec--eEEEEEC-CEEEEEeecccCc
Q 015066 263 GIGSVVIGTVQSLKPY--GAFIDIG-GINGLLHVSQISH 298 (414)
Q Consensus 263 ~~G~iv~g~V~~i~~~--G~fV~l~-gv~Glvh~sels~ 298 (414)
.-|..|-|+|.+|... -|+|+++ +.+-.++..+|..
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~ 53 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISP 53 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEE
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccc
Confidence 3488899999999877 5999998 7888888777753
No 136
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=40.83 E-value=68 Score=24.16 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=32.4
Q ss_pred EEEEEEEEeCCeEEEEeCCCeeEE-EcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEE
Q 015066 103 VKGTVFCTDNRGALVDITAKSSAY-LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLS 168 (414)
Q Consensus 103 V~G~V~~v~~~G~~Vdig~k~~g~-lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS 168 (414)
++|+|.+++...+.++-+. ...+ .|.--|...-.....-..+++|+.|+|.+...+ .+.+.++
T Consensus 6 ~~G~V~~vd~~~iTi~H~p-I~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~--~g~~~it 69 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEA-IPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDP--HGMATLV 69 (82)
T ss_dssp EEEEEEECCSSEEEEEECC-CTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEET--TTEEEEE
T ss_pred EeEEEEEEccccEEEecCC-ccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECC--CCeEEEE
Confidence 5899999998874443332 1111 111111111011111123789999999997643 4344443
No 137
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=39.62 E-value=7.2 Score=31.12 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=43.8
Q ss_pred cEEEEEEEEEEeeceEE-EEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEe-CCCCeEEEE
Q 015066 265 GSVVIGTVQSLKPYGAF-IDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHD-RERGRVSLS 331 (414)
Q Consensus 265 G~iv~g~V~~i~~~G~f-V~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id-~e~~ri~LS 331 (414)
...+.|+|+...+.+.| |.+. |..-|+|++- +... .--+..||.|.|-....| ..+++|..-
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~G----KmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r 83 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLDGKTRLGRIPG----RLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWR 83 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEETTEEEEEECCH----HHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcc----ccee-eEEecCCCEEEEEeccCCCCceEEEEEE
Confidence 34588999999998887 7775 8999999874 1222 234789999999877666 444454443
No 138
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=39.54 E-value=11 Score=29.22 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=35.0
Q ss_pred eEEEEEEEEEecC-cEEEEEC-CEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 189 VVVKGKVVGANKG-GVVAEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 189 ~iv~G~V~~v~~~-G~~V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
+..+|+|+..+++ |++-.-+ +-+.|+|+|.+... ..-..||.|.+.+..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~~--~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDG--NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGS--CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccCC--CCCCCCCEEEEEEEe
Confidence 4678999999754 4444334 68999999999852 222379999987643
No 139
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=38.72 E-value=14 Score=27.82 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=34.0
Q ss_pred eEEEEEEEEEecC-cEEEEE-C-CEEEEEeccccCCCCccccccCCeEEEEEEE
Q 015066 189 VVVKGKVVGANKG-GVVAEV-E-GLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239 (414)
Q Consensus 189 ~iv~G~V~~v~~~-G~~V~i-~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~ 239 (414)
+...|+|....++ |++..- + +-+.|+|++.+... ..-..||.|.+.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~~g--~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDG--IELQAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCCSS--CCCCTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcCCC--CcCCCCCEEEEEEEE
Confidence 3467899988654 554433 3 38999999999833 223379999997654
No 140
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=37.98 E-value=54 Score=22.94 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=29.3
Q ss_pred CEEEEEEEEEeCCeE----EEEeCCC--eeEEEcCccccccccCCccccCccCCcEEEEEE
Q 015066 101 TKVKGTVFCTDNRGA----LVDITAK--SSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155 (414)
Q Consensus 101 ~iV~G~V~~v~~~G~----~Vdig~k--~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~V 155 (414)
..+.|+|.++...|. .++++++ ..+.++... ..+..+.+|+.+.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s--------~~~l~L~~G~~V~a~i 59 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDS--------VEELGVKEGAELTAVV 59 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHH--------HHHHTCCTTCEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHH--------HHHCCCCCCCEEEEEE
Confidence 468999999988773 3444432 233333322 2334478999988875
No 141
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=37.97 E-value=23 Score=27.36 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=37.3
Q ss_pred CEEEEEEEEEeCCeEEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEE
Q 015066 101 TKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (414)
Q Consensus 101 ~iV~G~V~~v~~~G~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~ 157 (414)
...+|+|...+++.=|+.- +++.+-|+|.+.+.. . + .+.+|++|++.+..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~-~-~-----~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILD-G-N-----QLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGG-S-C-----CCCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccC-C-C-----CCCCCCEEEEEEEe
Confidence 4678999999875556655 345789999999864 1 1 27889999998854
No 142
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=35.48 E-value=94 Score=21.33 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=28.0
Q ss_pred EEEEEEEEEEeeceEEEE----ECCEEEEEeecccCcccccCcccccCCCCEEEEEEE
Q 015066 266 SVVIGTVQSLKPYGAFID----IGGINGLLHVSQISHDRVADIATVLQPGDTLKVMIL 319 (414)
Q Consensus 266 ~iv~g~V~~i~~~G~fV~----l~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl 319 (414)
..+.|+|+++...|..++ ++|..-... ++..... .-.+++|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~---it~~s~~--~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAA---ITIDSVA--DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEE---EEHHHHH--HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEE---eCHHHHH--hCCCCCCCEEEEEEe
Confidence 468999999998774433 333221111 1111111 124899999998763
No 143
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=34.01 E-value=75 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.3
Q ss_pred ccccEEEEEEEEEEee--ceEEEEEC-CEEEEEeecccC
Q 015066 262 LGIGSVVIGTVQSLKP--YGAFIDIG-GINGLLHVSQIS 297 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~--~G~fV~l~-gv~Glvh~sels 297 (414)
..-|..|.|+|.+|.. --|+|+++ |..-.++-.+|.
T Consensus 24 wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~ 62 (66)
T 2eqj_A 24 WSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQ 62 (66)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred EccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeeccc
Confidence 3458899999999996 46799998 898888877664
No 144
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=32.26 E-value=1.6e+02 Score=24.65 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=46.0
Q ss_pred EEEEEEEEEecCcEE-EEEC-CEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEeehhh
Q 015066 190 VVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK 253 (414)
Q Consensus 190 iv~G~V~~v~~~G~~-V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~ 253 (414)
.+.|+|+....++.| |.+. |..-+++++-=... ..+-..|+.|.|....+|..+++|+.-.+.
T Consensus 32 e~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 689999999888877 7775 88888776653322 233335999999888888778888766543
No 145
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=32.14 E-value=1.4e+02 Score=21.38 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=33.1
Q ss_pred cCCCCCEEEEEEEEEeCCeE-EEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEe
Q 015066 96 NSELGTKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~-~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id 159 (414)
.++.|+.++.+|.+....|- +..+.+ ..-|+|. -.+|++++++|....
T Consensus 12 ~~~~~~~~~v~I~~l~~~G~Gva~~~g-~~vfV~~---------------alPGE~V~v~i~k~k 60 (70)
T 1yvc_A 12 PVEAGKEYEVTIEDMGKGGDGIARIDG-FVVFVPN---------------AEKGSVINVKVTAVK 60 (70)
T ss_dssp SSCTTCEEEEECCEECTTSCEEEEETT-EEEEETT---------------CCTTCEEEEEEEEEC
T ss_pred cccCCCEEEEEEEEcCCCccEEEEECC-EEEEccC---------------CCCCCEEEEEEEEee
Confidence 46789999999998877553 333433 3445553 358999999998854
No 146
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=31.87 E-value=1.1e+02 Score=23.39 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=33.4
Q ss_pred eEEEEEEEeecccceEEeehhhh--hh-----------h--HHhhccccEEEEEEEEEEe
Q 015066 232 DLPLKFVEVDEEQSRLVLSNRKA--MA-----------D--SQAQLGIGSVVIGTVQSLK 276 (414)
Q Consensus 232 ~V~vkVl~vD~e~~ri~LS~K~~--l~-----------~--~~~~l~~G~iv~g~V~~i~ 276 (414)
.+...|..||.+.++|.|+.-+. +. + ....+++|+.|.-.+....
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 46778999999999999987553 11 0 1268999999998887653
No 147
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.79 E-value=1.1e+02 Score=22.80 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=33.2
Q ss_pred eEEEEEEEeecccceEEeehhhhhh-------------h--HHhhccccEEEEEEEEEEe
Q 015066 232 DLPLKFVEVDEEQSRLVLSNRKAMA-------------D--SQAQLGIGSVVIGTVQSLK 276 (414)
Q Consensus 232 ~V~vkVl~vD~e~~ri~LS~K~~l~-------------~--~~~~l~~G~iv~g~V~~i~ 276 (414)
.....|..+|.+.+.|.|++-+.-. + ....+++|+.|.-.+....
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC
Confidence 3667899999999999998755311 0 1268999999998887553
No 148
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.66 E-value=1.5e+02 Score=22.04 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=28.8
Q ss_pred EEEEEEEEEeCCeEEEEeCCC-eeEE-EcCccccccccCCccccCccCCcEEEEEEEEE
Q 015066 102 KVKGTVFCTDNRGALVDITAK-SSAY-LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158 (414)
Q Consensus 102 iV~G~V~~v~~~G~~Vdig~k-~~g~-lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~i 158 (414)
.++|+|.+++...-.|.|..+ ...+ .|.--+...-.....-..+++|+.|.|.+...
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEe
Confidence 488999999986523444211 1110 01111111101111112388999999999764
No 149
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=31.62 E-value=60 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=46.0
Q ss_pred hccccEEEEEEEEEEeeceEEEEECCEEEEEeecccCcccccCcccccCCCCEEEEEE
Q 015066 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMI 318 (414)
Q Consensus 261 ~l~~G~iv~g~V~~i~~~G~fV~l~gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkV 318 (414)
-++.|..++|...+-...++.++..+.--++|...+..+.+. .++.||++..++
T Consensus 247 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~pe~~~----~l~~~~~~~~~~ 300 (302)
T 2jk8_A 247 VAKEGETYTGTYRGAGLEGFALNVKGAYIIGNIDHLPPEQLK----ILKPGDKITFTA 300 (302)
T ss_dssp ECCTTCEEEEEEEEECSSEEEEEBTTBEEEEEGGGSCHHHHH----TCCTTCEEEEEC
T ss_pred eccCCCccceEEEecCCCeEEEEeCCcEEEEECCccCHHHHh----ccCCCCEEEEEe
Confidence 356899999999999999999999998999999999877643 578999998764
No 150
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.74 E-value=1.5e+02 Score=22.55 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=28.7
Q ss_pred EEEEEEEEEeCCeEEEEeCCC-eeEE-EcCccccccccCC-ccccCccCCcEEEEEEEEE
Q 015066 102 KVKGTVFCTDNRGALVDITAK-SSAY-LPTQEACIHKIKH-VEEAGIVPGLKEEFVIIGE 158 (414)
Q Consensus 102 iV~G~V~~v~~~G~~Vdig~k-~~g~-lp~sEls~~~~~~-~~e~~~~vG~~v~v~Vl~i 158 (414)
.++|+|.+++...-.|.|..+ +..+ .|.--+.. .+.+ ..-..+++|+.|.|.+...
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F-~v~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRF-TITPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEE-ECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEE-EcCChhhhhcCCCCCEEEEEEEEe
Confidence 489999999986533444211 1100 01111111 1111 1112378999999999764
No 151
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.31 E-value=1e+02 Score=27.34 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=38.6
Q ss_pred EEEEEEEEEecCcEEEEEC--CEEEEEeccccCCCCccccccCCeEEEEEEEe-ecccceE
Q 015066 190 VVKGKVVGANKGGVVAEVE--GLRGFVPFSQISSKSTAEELLGKDLPLKFVEV-DEEQSRL 247 (414)
Q Consensus 190 iv~G~V~~v~~~G~~V~i~--gi~GfIp~sels~~~~~~~~vGq~V~vkVl~v-D~e~~ri 247 (414)
.++|+|..+....++++++ |+..++|.+-+..-.. +|+++...+... ..+.-++
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~~l~~----~g~~v~l~~~~~vReda~~l 60 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPE----AGQEAIVFTHFVVREDAQLL 60 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCC----TTSEEEEEEEEEEETTEEEE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHHhcCC----CCCeEEEEEEEEEeehhhhh
Confidence 5899999999999999997 6777777665553221 599988876654 3333343
No 152
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=27.63 E-value=3.2e+02 Score=24.09 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=61.0
Q ss_pred CCCEEEEEEEEEeCCe-EEEEe-CCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCCCCeEEEEeeehhhhH
Q 015066 99 LGTKVKGTVFCTDNRG-ALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176 (414)
Q Consensus 99 ~G~iV~G~V~~v~~~G-~~Vdi-g~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~~~~i~LS~k~~~~~~ 176 (414)
-|.-..|+|.++.+++ +.|.+ ..+....+|.+++..-. .+..-.+.+-++|.+-.+.+.++.. ...
T Consensus 79 d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~----~~f~~lP~qA~~c~L~~v~p~~~~w--------~~e 146 (226)
T 4b9x_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAIL----PQFLLLPFQGMQCWLVDIQPPNKHW--------TKE 146 (226)
T ss_dssp TTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCC----GGGSSSCBCCEEEEESSEECSSSSC--------CHH
T ss_pred CCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccCh----HHHcccccceEEEEEecEECCCCCC--------CHH
Confidence 4667889999987664 43433 33456788888774321 1221346788999997776644321 123
Q ss_pred HHHHhhhcccCCeEEEEEEEEEecCcEEEEE
Q 015066 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207 (414)
Q Consensus 177 ~~~~l~~~~~~g~iv~G~V~~v~~~G~~V~i 207 (414)
+-..++++. .|..+.++|.++...++.|.+
T Consensus 147 a~~~f~~l~-~~k~l~~~V~~~~~~~~~V~L 176 (226)
T 4b9x_A 147 ATARFQACV-VGLKLQARVVEITANGVGVEL 176 (226)
T ss_dssp HHHHHHHHH-TTCCEEEEEEEECSSCEEEEE
T ss_pred HHHHHHHHH-CCCeEEEEEEEEeCCeEEEEE
Confidence 334455554 355899999999988887765
No 153
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=26.50 E-value=1.7e+02 Score=20.64 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=33.8
Q ss_pred cCCCCCEEEEEEEEEeCCeE-EEEeCCCeeEEEcCccccccccCCccccCccCCcEEEEEEEEEe
Q 015066 96 NSELGTKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159 (414)
Q Consensus 96 ~l~~G~iV~G~V~~v~~~G~-~Vdig~k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id 159 (414)
.++.|+.++.+|.+....|- +..+.+ ..-|+|. ..+|+++.++|....
T Consensus 10 ~~~~~~~~~~~I~~l~~~G~Gva~~~g-~~vfV~~---------------alPGE~V~v~i~k~k 58 (68)
T 1yez_A 10 PVEEGEVYDVTIQDIARQGDGIARIEG-FVIFVPG---------------TKVGDEVRIKVERVL 58 (68)
T ss_dssp SCCTTEEEEEECCEEETTTEEEEEETT-EEEEEES---------------CCTTCEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEcCCCccEEEEECC-EEEECcC---------------CCCCCEEEEEEEEec
Confidence 46789999999998887654 333443 4455553 248999999998754
No 154
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=26.16 E-value=49 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.4
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 015066 304 IATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335 (414)
Q Consensus 304 ~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~ 335 (414)
+.+.+.+||.|.++|++++ ++++.|.+.+-
T Consensus 8 ~GEsI~IGd~I~ItVl~v~--g~~VrLGI~AP 37 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS--GQQVRIGINAP 37 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEECC
T ss_pred CCCeEEECCCEEEEEEEEe--CCEEEEEEECC
Confidence 3556778999999999998 79999999864
No 155
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=25.79 E-value=46 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.0
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 015066 304 IATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 336 (414)
Q Consensus 304 ~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~~ 336 (414)
+.+.+..||.|.++|++++ ++++.|.+.+-.
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~ 40 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVK--GNQVRIGVNAPK 40 (63)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEEECT
T ss_pred CCCeEEeCCCEEEEEEEEe--CCEEEEEEECCC
Confidence 4556778999999999998 799999998743
No 156
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=24.79 E-value=1e+02 Score=22.23 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=32.9
Q ss_pred EEEEEEEEEecCcEE-EEEC-CEEEEEeccccCCCCccccccCCeEEEEEEEeecccceE
Q 015066 190 VVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRL 247 (414)
Q Consensus 190 iv~G~V~~v~~~G~~-V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri 247 (414)
...|+|++...+|.| |.+. |..-.++.+--......+..+|+.|.+.+...|..++.|
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I 66 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRI 66 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEE
T ss_pred EEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEE
Confidence 347999999885554 7774 533333333322222233458999988755445444444
No 157
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=24.41 E-value=1.7e+02 Score=20.70 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=29.8
Q ss_pred CCCCEEEEEEEEEeCC--eEEEEeCCCeeEEEcCcccc
Q 015066 98 ELGTKVKGTVFCTDNR--GALVDITAKSSAYLPTQEAC 133 (414)
Q Consensus 98 ~~G~iV~G~V~~v~~~--G~~Vdig~k~~g~lp~sEls 133 (414)
.-|-...|+|+++++. -++|.+..++.--+...++.
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 4588889999999986 59999999888887777664
No 158
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.71 E-value=1.4e+02 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred ccEEEEEEEEEEee--ceEEEEEC-CEEEEEeecccCcc
Q 015066 264 IGSVVIGTVQSLKP--YGAFIDIG-GINGLLHVSQISHD 299 (414)
Q Consensus 264 ~G~iv~g~V~~i~~--~G~fV~l~-gv~Glvh~sels~~ 299 (414)
-|-.|-|+|++|.. .-|||.|+ +.+-.++-.+|...
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~~ 60 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 60 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEECC
T ss_pred CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccccc
Confidence 47889999999985 45999998 79888888777543
No 159
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=23.07 E-value=3.8e+02 Score=23.48 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=34.0
Q ss_pred EEEEEEEEEeCCeEEEEeCC-CeeEEEcCccccccccCCccccCccCCcEEEEEEEEEeCC
Q 015066 102 KVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161 (414)
Q Consensus 102 iV~G~V~~v~~~G~~Vdig~-k~~g~lp~sEls~~~~~~~~e~~~~vG~~v~v~Vl~id~~ 161 (414)
.+.|+|..+.+..++|+.++ +-+-++|.+-+. .+ ...|+.+.+.++..=.+
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~-----~l----~~~g~~v~l~~~~~vRe 55 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFY-----EL----PEAGQEAIVFTHFVVRE 55 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHT-----TC----CCTTSEEEEEEEEEEET
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHH-----hc----CCCCCeEEEEEEEEEee
Confidence 58999999999999999976 334455544332 11 13589888776554333
No 160
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=22.90 E-value=64 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.4
Q ss_pred CcccccCCCCEEEEEEEEEeCCCCeEEEEEeeC
Q 015066 303 DIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 335 (414)
Q Consensus 303 ~~~~~~~~G~~V~vkVl~id~e~~ri~LS~K~~ 335 (414)
.+.+.+.+||.|.++|+++. ++++.|.+.+-
T Consensus 19 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~AP 49 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVK--GNQVRIGVNAP 49 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEEE
T ss_pred cCCCEEEeCCCEEEEEEEEe--CCEEEEEEECC
Confidence 34667889999999999998 79999999864
No 161
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=22.70 E-value=98 Score=24.94 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=38.1
Q ss_pred ccccEEEEEEEEEEeeceE-EEEEC-CEEEEEeecccCcccccCcccccCCCCEEEEEEEEEeCCCCeE
Q 015066 262 LGIGSVVIGTVQSLKPYGA-FIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRV 328 (414)
Q Consensus 262 l~~G~iv~g~V~~i~~~G~-fV~l~-gv~Glvh~sels~~~~~~~~~~~~~G~~V~vkVl~id~e~~ri 328 (414)
+..|+. .|+|+.....|. .|.+. |..=++|++-- +.. .--..+||.|.+.+...|..+++|
T Consensus 29 ~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK----~Rk-~I~i~~GD~V~ve~~~~~~~kG~I 91 (117)
T 2oqk_A 29 KEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHIRGK----MRK-KVWVNPGDIVLVSLRDFQDSKGDI 91 (117)
T ss_dssp CCTTEE-EEEEEEEEETTEEEEEETTSCEEEEECCHH----HHH-HSCCCTTCEEEEEECTTCTTEEEE
T ss_pred CCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEEcCc----eec-CCcCCCCCEEEEEEEcCCCCeEEE
Confidence 445665 699999988555 47776 77778887642 111 223459999998655334333333
No 162
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.56 E-value=2.8e+02 Score=22.07 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=43.5
Q ss_pred EEEEEEEEEecCcEE-EEEC-CEEEEEeccccCCCCccccccCCeEEEEEEEee-cccceEEeehhhh
Q 015066 190 VVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVD-EEQSRLVLSNRKA 254 (414)
Q Consensus 190 iv~G~V~~v~~~G~~-V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD-~e~~ri~LS~K~~ 254 (414)
.+.|+|+....++.| |.+. |..-+++++-=... ...-..|+.|.|.....| ..+++|+.-.+..
T Consensus 16 e~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred eEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 688999999888876 7775 77766665542222 222335999999877777 6677777655543
No 163
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=21.76 E-value=3.2e+02 Score=23.50 Aligned_cols=94 Identities=7% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CeEEEEEEEEEecCcEEEEEC--CEEEEEeccccCCC-CccccccCCeEEEEEEEeecccceEEeehhhhhhhHHhhccc
Q 015066 188 DVVVKGKVVGANKGGVVAEVE--GLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI 264 (414)
Q Consensus 188 g~iv~G~V~~v~~~G~~V~i~--gi~GfIp~sels~~-~~~~~~vGq~V~vkVl~vD~e~~ri~LS~K~~l~~~~~~l~~ 264 (414)
|....|+|+++.+..+.|.+- |-...+|.++|-.- .....+-.+-++|++-.+++.. .-.--....+...++-.
T Consensus 66 ~~wyRa~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~---~~~w~~eA~~~l~~lv~ 142 (218)
T 2wac_A 66 NQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT---DNEDKEEALRAFSEDVL 142 (218)
T ss_dssp CCEEEEEEEEEETTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS---SHHHHHHHHHHHHHHHB
T ss_pred CeEEEEEEEEecCCeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC---CcchHHHHHHHHHHHhc
Q ss_pred cEEEEEEEEEEeece-EEEEE
Q 015066 265 GSVVIGTVQSLKPYG-AFIDI 284 (414)
Q Consensus 265 G~iv~g~V~~i~~~G-~fV~l 284 (414)
|..+.+.|....... .+|.+
T Consensus 143 ~k~v~~~v~~~d~g~~~~V~L 163 (218)
T 2wac_A 143 NHKVQLNVELKVTGSPNLATL 163 (218)
T ss_dssp TCEEEEEEEECCTTSCEEEEE
T ss_pred CCEEEEEEEEEcCCceEEEEE
No 164
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=21.61 E-value=1.2e+02 Score=22.21 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=0.0
Q ss_pred cEEEEEEEEEEeeceEEEEEC-CEEEEEeecccCc
Q 015066 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH 298 (414)
Q Consensus 265 G~iv~g~V~~i~~~G~fV~l~-gv~Glvh~sels~ 298 (414)
|..|-|+|+.....-|+|+|+ .-+-.++..+|..
T Consensus 29 G~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~k 63 (69)
T 2xk0_A 29 GRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRK 63 (69)
T ss_dssp SCEEEEEEEEECSSCEEEEETTCCEEEECTTTEEC
T ss_pred CCEEEEEEEecCCceEEEEecCCcceeeeHHHHHh
No 165
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=21.12 E-value=11 Score=29.78 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=33.4
Q ss_pred ccCcccchhhhhhhhhhcccCcceEEEEEEeCCcchhHHHHHHHHHHHHhhcc
Q 015066 20 RLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCR 72 (414)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iiee~~~~~~ 72 (414)
.|+.++| ....+.+++.++..+|+.++ +.+++|.++.-..+.
T Consensus 8 ~~s~~ap-------~~~~i~Ip~~~ig~IIGkgG----~~Ik~I~~~tga~I~ 49 (104)
T 1we8_A 8 ILTENTP-------VFEQLSVPQRSVGRIIGRGG----ETIRSICKASGAKIT 49 (104)
T ss_dssp CCSSSCE-------EEEEEEEETTTHHHHHTTTS----HHHHHHHHHHCCEEE
T ss_pred ccCCCCC-------EEEEEEEChhheeeeECCCC----HHHHHHHHHHCCEEE
Confidence 3889998 55677888889999999999 788888888655544
No 166
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=20.81 E-value=1.3e+02 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=25.3
Q ss_pred ccCCCCCEEEEEEEEEeCCeEE-EEe-CCCeeEEEcCccc
Q 015066 95 FNSELGTKVKGTVFCTDNRGAL-VDI-TAKSSAYLPTQEA 132 (414)
Q Consensus 95 ~~l~~G~iV~G~V~~v~~~G~~-Vdi-g~k~~g~lp~sEl 132 (414)
-.++.|++|. |....+.|.+ ... .++..|++|.+-+
T Consensus 23 Ls~~~Gd~i~--v~~~~~~gWw~g~~~~~g~~G~~P~nyV 60 (65)
T 2lj0_A 23 LELRDGDIVD--VMEKCDDGWFVGTSRRTKQFGTFPGNYV 60 (65)
T ss_dssp CCBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEETTSE
T ss_pred cCCCCCCEEE--EeEeCCCCEEEEEECCCCCEEEEehhHe
Confidence 3789999996 5566666654 444 3468999998755
No 167
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.01 E-value=1.1e+02 Score=24.63 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCeEEEEEEEEEecCcEE-EEEC-CEEEEEeccccCCCCccccccCCeEEEEEEEeecccceEEe
Q 015066 187 EDVVVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249 (414)
Q Consensus 187 ~g~iv~G~V~~v~~~G~~-V~i~-gi~GfIp~sels~~~~~~~~vGq~V~vkVl~vD~e~~ri~L 249 (414)
.+ ...|+|+....+|.| |.+. |..-+++++--... .....+|+.|.+.+...|..++.|.-
T Consensus 31 ~~-e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~ 93 (117)
T 2oqk_A 31 EG-QEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIIL 93 (117)
T ss_dssp TT-EEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEE
T ss_pred CC-EEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEE
Confidence 44 458999999886655 7674 64444444332211 23334799999876655555555543
Done!