Citrus Sinensis ID: 015066


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPADD
ccHHHHHHHcccccccccccccccccccEEEEEEEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEEEEEECccEEEEEcccccEEEEEcHHHcccccccccccccccccEEEEEEEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccEEEEEEccCEEEEcccccccccccccccccEEEEEEEEECcccccEEEEEHHHHHHHHHccccccEEEEEEEEEcccCEEEEcccccccHHHHHcccccccccccccccccEEEEEEEEECccccEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEEcccccEEEEECcccccccccccccccccccccccccccccccccc
********TG*******************************TIVSAVAISNA*TREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGIL**LS******************
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MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAIxxxxxxxxxxxxxxxxxxxxxCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVxxxxxxxxxxxxxxxxxxxxxARADMLRFQPESGLTLNSDGILGPLSPDLPADGLDLTDISPADD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
30S ribosomal protein S1, chloroplastic Actively engaged in the initiation complex formation via a strong mRNA-binding activity. Possesses a poly(A)-binding activity which might play a role as a control element in chloroplast mRNA translation.probableP29344
30S ribosomal protein S1 Binds mRNA.probableP46228

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1Q8K, chain A
Confidence level:very confident
Coverage over the Query: 96-206
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Template: 1Q8K, chain A
Confidence level:very confident
Coverage over the Query: 261-343
View the alignment between query and template
View the model in PyMOL
Template: 3GO5, chain A
Confidence level:very confident
Coverage over the Query: 98-134,146-173,185-339
View the alignment between query and template
View the model in PyMOL
Template: 4AID, chain A
Confidence level:very confident
Coverage over the Query: 13-34,82-89
View the alignment between query and template
View the model in PyMOL
Template: 2B8K, chain G
Confidence level:confident
Coverage over the Query: 262-340
View the alignment between query and template
View the model in PyMOL