BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015067
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 196/341 (57%), Gaps = 21/341 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 413
M +S LD+VL + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 199/344 (57%), Gaps = 21/344 (6%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L K
Sbjct: 33 TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 136 RETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 189
R AA+YLA G+D K S V AH + W++ IG L +M QFK+KS G E
Sbjct: 93 RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 249
V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND--------- 201
Query: 250 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 309
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK TDS
Sbjct: 202 ---IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDS 258
Query: 310 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 369
++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L PIQ
Sbjct: 259 EGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQ 318
Query: 370 VRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 413
RY E++ +S LD++L L + AMG R+
Sbjct: 319 DRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 204/357 (57%), Gaps = 23/357 (6%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMI 177
D L K T +T A+YLACGID K SHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 178 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 237
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 238 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 296
IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 297 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 354
V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 286
Query: 355 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 411
+ DA+ L +Q RY D A L V+ TL VY+A+GF+
Sbjct: 287 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 343
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 192/340 (56%), Gaps = 21/340 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M QFKEKS A
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG------------E 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 188/341 (55%), Gaps = 21/341 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 413
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 187/340 (55%), Gaps = 21/340 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
+S LD+VL + QA G R
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGR 326
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 200/351 (56%), Gaps = 21/351 (5%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 186
+AT + AI LA G+D K SHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 187 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXX 246
+ V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN---------NI 170
Query: 247 XXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 305
IF +PEP IP ARVMSL D KMSKS + ++ I LL DPK +I KI +
Sbjct: 171 YSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSII-KKINKA 229
Query: 306 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN-WGTFKPLLTDALI 362
+TD+ + +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 230 QTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVV 289
Query: 363 EHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 413
L P+Q Y+ I +D YL+ V+ TL VY A+GF+ R
Sbjct: 290 AMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 179/340 (52%), Gaps = 48/340 (14%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 205 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 260
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 261 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 299
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/340 (40%), Positives = 178/340 (52%), Gaps = 51/340 (15%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNS------KSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID + +S V AH + W+L IG L +M V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM--------------VS 107
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 108 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 153
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 154 -FTIPE------ARRIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 201
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 202 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 257
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 258 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 296
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 175/340 (51%), Gaps = 55/340 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK--------- 200
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 201 -------SPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 253
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 254 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 292
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 174/340 (51%), Gaps = 61/340 (17%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNS------KSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID + +S V AH + W+L IG L +M Q V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 109
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 110 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER------------------- 150
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 FFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA------- 203
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+NLL+IY +SG++ E+ + FK L +IE L PIQ RY
Sbjct: 204 ----------ISNLLNIYSTLSGQSIEELERQY------VFKADLAQVVIETLRPIQERY 247
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 248 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 286
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 174/341 (51%), Gaps = 21/341 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I S + PTG I +G Y+GA++ ++ LQ+ Y F I D AIT+ D +L + R
Sbjct: 2 KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W L IG L + FKE S AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLT+P + A+ ILLY +D VPVGE KQ ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGE------------ 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+ SL D +S P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 413
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 175/340 (51%), Gaps = 56/340 (16%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPE--------RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 196
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 197 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 252
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 253 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 291
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 183/346 (52%), Gaps = 32/346 (9%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P YD L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
T E A + +A G+D K SHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXX 248
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET------- 172
Query: 249 XXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 173 -----FPEPQALLNPEAPRVPGI-DGKAKMSKSL---GNTIGLLEPEESIWQKIQHLPDD 223
Query: 309 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGTF--KPLLTDALIEHL 365
+ + PE L + + K E + EE + GT+ K +L D L+E L
Sbjct: 224 PQR-IRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 366 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 411
PI+ R E + D Y+ L T+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLL 328
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 169/340 (49%), Gaps = 68/340 (20%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
P +NLL+IY + G FK L +IE L PIQ RY
Sbjct: 205 T-------PGISNLLNIYSTL-----------------GVFKADLAQVVIETLRPIQERY 240
Query: 373 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 412
M +S LD+VL + + QAMG R
Sbjct: 241 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 279
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 164/323 (50%), Gaps = 32/323 (9%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L + +
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 187
LA G+D K S + H + +L+ + +G L +M QFK K + G
Sbjct: 65 VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 188 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXX 247
N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------ 178
Query: 248 XXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 307
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++ T
Sbjct: 179 ------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATT 232
Query: 308 DSSAGLEFDNLERPECNNLLSIY---------QLISGKTKGEVAEECQNMNWGTFKPLLT 358
DS + F + +P N+L+I Q ++ + ++ ++ K LT
Sbjct: 233 DSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALT 292
Query: 359 DALIEHLHPIQVRYEEIMSDSAY 381
+A + L IQ + E+I + +
Sbjct: 293 EATVNLLVNIQRKREQISREQVF 315
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 170/342 (49%), Gaps = 37/342 (10%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
R+++G+QP+G +H+GNY GAIK + Q + FI + HA T D ++L + + + A
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 140 AIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 193
A +L+ GID K S V+ EL W+LS TP G L + +K+K A G +
Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 194 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAI 253
L +YPVL A+DILL+ + VPVG+DQ QH+E+ R++A +VN I
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGE------------I 170
Query: 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGL 313
F +PE + A V+ TDG +K + S Q+ I++ + + +I TDS+A
Sbjct: 171 FTLPEARVNEEVAVVVG-TDG----AKXSKSYQNTIDIFSSEKTLKKQISSIVTDSTA-- 223
Query: 314 EFDNLERP---ECNNLLSIYQLI---SGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 367
LE P E N+ I +L SG+ + ++ E +G FK L + + +
Sbjct: 224 ----LEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE 279
Query: 368 IQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMG 409
+ +Y E++ ++L ++L +Y+ +G
Sbjct: 280 AREKYNELLEKPSHLKEILDFGATKARKIAQEKXQKIYEKIG 321
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 170/347 (48%), Gaps = 36/347 (10%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 137
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T YD +L + TR+
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 138 TAAIYLACGIDNSKS------HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 191
+LACGID KS V+ H EL L S + L ++ +KE + +++
Sbjct: 74 LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 192 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXX 250
A L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN------------YLY 181
Query: 251 XAIFKVPEPLIPPAGARVMSL--TDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
+F PE ++ +RV L TDG KMSKS + INL + + I R TD
Sbjct: 182 DEVFPEPEAIL----SRVPKLPGTDG-RKMSKSY---GNIINLEISEKELEQTILRMMTD 233
Query: 309 SSAGLEFDNLERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWGTF--KPLLTDALIEH 364
A + + PE + +Q IS + V E C + G K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 365 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 411
L PI + +I D Y+D V+ T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 142/343 (41%), Gaps = 30/343 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATR 136
+ R+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ +
Sbjct: 2 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 137 ETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 189
A YLA G+D K S V EL + + L + K E + K GE
Sbjct: 62 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 249
V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ- 180
Query: 250 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 309
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 181 ---LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDP 224
Query: 310 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHL 365
L + R E N + + A + Q G K L D L L
Sbjct: 225 GH-LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVL 283
Query: 366 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 408
PI+ R E D + + + TL V +AM
Sbjct: 284 APIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 326
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 140/340 (41%), Gaps = 30/340 (8%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRETA 139
+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ + A
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 140 AIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 192
YLA G+D K S V EL + + L + K E + K GE V
Sbjct: 85 LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 252
YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ---- 200
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 201 LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDPGH- 246
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHLHPI 368
L + R E N + + A + Q G K L D L L PI
Sbjct: 247 LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPI 306
Query: 369 QVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 408
+ R E D + + + TL V +AM
Sbjct: 307 RTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 346
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 101/261 (38%), Gaps = 51/261 (19%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 128
A + + +++G P+G H G+ L + I LQ N ++ I D A +
Sbjct: 64 AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122
Query: 129 QQLSKATRETAAIYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
+ + A E A +A G+D + E + + TP ++IQ A
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDT------EFYFQTNRGTP---YFRLIQLFSGKVTAAE 173
Query: 189 ENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTRELAERVN 235
LT +MAS DIL Q D VPVG DQ HL LTR+LA+R+
Sbjct: 174 MEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRM- 232
Query: 236 XXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLS--KMSKSAPSDQSRINLLD 293
+ ++ P + L GL KMS S P S I L D
Sbjct: 233 ---------------AGVVELERP-----ASTYHKLQPGLDGRKMSSSRPD--STIFLTD 270
Query: 294 PKDVIANKIKRCKTDSSAGLE 314
P +V NK+ R T A E
Sbjct: 271 PPEVARNKLFRALTGGRATAE 291
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 194
+ A G+ +K + +L ++ L+ T + + ++ + EN VA
Sbjct: 93 FEAMGL-KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPKVA 147
Query: 195 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
+ YP++ +DI D G +Q++ L REL
Sbjct: 148 EVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 135
K R G +P+G IHLG+ + ++ + LQ + +E + + D+HA T +++++
Sbjct: 32 KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 136 RETAAIYLACGIDNSKSHV---------RAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 186
+++A G+D S++ R +V + ++ T + + E S +
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARR--SMDEVSRRK 148
Query: 187 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 229
E+ V+ + YP++ A DI D G DQ++ L RE
Sbjct: 149 --EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSHVRAHVELM---------WLLSSATPIGWLNKMIQFKEKSHKA 186
++ A G+ K+ E M + L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 187 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
EN VA + YP++ + I D G +Q++ L REL
Sbjct: 142 --ENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGG 188
++ A G+ +K + +L ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL-KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----D 141
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 230
EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 142 ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGG 188
++ A G+ +K + +L ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL-KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----D 141
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
EN VA + YP++ + D V G +Q++ L REL
Sbjct: 142 ENPKVAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 194
+ A G+ +K + +L ++ L+ T + + ++ + EN VA
Sbjct: 93 FEAMGL-KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPKVA 147
Query: 195 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
+ YP++ + I D G +Q++ L REL
Sbjct: 148 EVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 39/239 (16%)
Query: 80 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAIT---LPYDTQQLSKAT 135
R G +P+G +H+ A+ E +F++ D A+ + + +++
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101
Query: 136 RETAAIYLACGIDNSK-------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
R ++ A G+D K + +H + W + IG N + + K K G
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK-KCCTIMG 158
Query: 189 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 245
+ G A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKL------- 211
Query: 246 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304
+P+I + + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 212 ------------KPVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQ 255
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGG 188
++ A G+ +K + +L ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL-KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED---- 141
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 188
++ A G+ + W+L + ++ K +
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSE-----WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA 121
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 70
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKSH------VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 189
++ A G+ + + + ++ L+ T + + ++ + E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED----E 142
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 230
N VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 143 NPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA 121
G +P+G IHLG+YL IK I LQN+ ++ + ++ DL A
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIYLADLAA 71
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKSHVRAHVEL-------MWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 194
+ A G+ +K + +L ++ L+ T + + ++ + EN VA
Sbjct: 93 FEAMGL-KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPKVA 147
Query: 195 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
+ YP++ + D G +Q++ L REL
Sbjct: 148 EVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 52/250 (20%)
Query: 77 VKKRIV--SGVQPTGSIHLGNYLGAIKNWIA---LQNSYETLFFIVDLHA---ITLPYDT 128
+K++++ G +P+G +H+ G +K+ I N +F+I D A + D
Sbjct: 53 LKRKLICYDGFEPSGRMHIAQ--GLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDL 110
Query: 129 QQLSKATRETAAIYLACGIDNSKSHVRAHVELMWL---LSSATPIGW-----------LN 174
+++ K ++ +CG++ +V+ +W ++ W +N
Sbjct: 111 KKIKKVGSYFIEVWKSCGMN------MENVQFLWASEEINKKPNEYWSLVLDISRSFNIN 164
Query: 175 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 234
+M + + ++ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 165 RMKRCLKIMGRSEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIK 224
Query: 235 NXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 294
P+I G + L +G KMSKS + S I + D
Sbjct: 225 KIKKK-------------------PVILSHGM-LPGLLEGQEKMSKS--DENSAIFMDDS 262
Query: 295 KDVIANKIKR 304
+ + KIK+
Sbjct: 263 ESDVNRKIKK 272
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 39/239 (16%)
Query: 80 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAIT---LPYDTQQLSKAT 135
R G +P+G H+ A+ E +F++ D A+ + + +++
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALXNDKVGGELEKIRIVG 101
Query: 136 RETAAIYLACGIDNSK-------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
R ++ A G D K + +H + W IG N + + K K G
Sbjct: 102 RYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK-KCCTIXG 158
Query: 189 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 245
+ G A + YP+ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLIGRKL------- 211
Query: 246 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304
+P+I + + L G +K SKS P S I D ++ +A KI++
Sbjct: 212 ------------KPVI-LSHHXLAGLKQGQAKXSKSDPD--SAIFXEDTEEDVARKIRQ 255
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 183 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 235
+A V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 150 GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLG 202
>pdb|3LY7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc
pdb|3LYA|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc In The
Presence Of K2recl6
Length = 372
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 314 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 351
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY9|A Chain A, Crystal Structure Of Mutant D471n Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 314 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 351
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|1R5S|A Chain A, Connexin 43 Carboxyl Terminal Domain
Length = 132
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 30 GLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTG 89
G PSK C +P A NGC S PTAP++ S ++V+G +
Sbjct: 4 GSPSKDCGSP-------KYAYFNGC----------SSPTAPLSPMSPPGYKLVTGDRNNS 46
Query: 90 SIHLGNYLGAIKNWI---ALQNSY-ETLFFIVDLHA--ITLPYDTQQLSK 133
S N + +NW A QN + I + HA P D Q K
Sbjct: 47 SCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNAKK 96
>pdb|3LY8|A Chain A, Crystal Structure Of Mutant D471e Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 314 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 351
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,899,324
Number of Sequences: 62578
Number of extensions: 413620
Number of successful extensions: 983
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 48
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)