Query 015067
Match_columns 413
No_of_seqs 179 out of 1338
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 1E-100 2E-105 775.2 37.2 356 57-412 25-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 1.1E-98 2E-103 717.1 29.4 325 78-413 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 1.8E-92 3.8E-97 720.4 33.5 315 78-411 2-332 (431)
4 PRK00927 tryptophanyl-tRNA syn 100.0 4.7E-91 1E-95 698.7 33.3 322 78-412 1-332 (333)
5 PRK12556 tryptophanyl-tRNA syn 100.0 7.4E-91 1.6E-95 695.8 32.8 314 78-411 3-332 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 6.5E-90 1.4E-94 696.4 34.3 327 78-411 2-397 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.2E-89 9E-94 672.1 26.9 300 76-392 3-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 1.2E-87 2.5E-92 673.3 33.3 317 78-411 2-330 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 3.6E-85 7.9E-90 654.6 30.9 313 77-410 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 3.4E-72 7.3E-77 550.3 25.0 268 80-364 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 2.5E-71 5.5E-76 561.3 26.2 279 77-388 65-364 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 1.2E-66 2.6E-71 521.6 23.7 260 77-374 29-322 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.5E-66 7.7E-71 525.8 24.3 264 77-374 65-365 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.3E-62 2.9E-67 526.7 26.0 275 77-375 31-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 2.6E-60 5.5E-65 482.3 26.4 273 77-377 72-370 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 2.6E-58 5.7E-63 453.7 15.0 269 77-366 4-292 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 1.7E-56 3.7E-61 437.7 23.7 242 80-364 1-273 (273)
18 cd00805 TyrRS_core catalytic c 100.0 9.3E-57 2E-61 438.8 20.3 243 79-364 1-269 (269)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 3.6E-49 7.8E-54 405.3 23.0 254 77-373 32-316 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 2E-46 4.3E-51 384.9 21.8 254 77-374 32-315 (410)
21 KOG2144 Tyrosyl-tRNA synthetas 100.0 8.1E-46 1.8E-50 354.9 17.7 261 77-375 33-334 (360)
22 KOG2145 Cytoplasmic tryptophan 100.0 1.6E-46 3.5E-51 359.9 10.6 276 77-377 84-383 (397)
23 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.9E-41 4.1E-46 345.0 18.0 244 78-367 30-294 (377)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.3E-36 2.8E-41 326.6 22.7 221 109-373 407-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 2.7E-33 5.8E-38 285.3 20.1 251 78-373 32-308 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 1.7E-18 3.7E-23 172.9 16.2 249 78-368 63-352 (467)
27 cd00808 GluRS_core catalytic c 99.5 4E-14 8.7E-19 136.4 11.0 171 86-304 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.4 1.1E-12 2.4E-17 116.1 11.0 63 198-282 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.7 1.4E-07 3E-12 90.7 12.6 168 86-303 9-181 (230)
30 PRK00750 lysK lysyl-tRNA synth 98.5 6.1E-06 1.3E-10 88.0 19.3 65 209-299 233-304 (510)
31 cd00674 LysRS_core_class_I cat 98.5 1.2E-06 2.5E-11 89.3 12.3 74 78-151 20-123 (353)
32 cd02156 nt_trans nucleotidyl t 98.2 6.9E-06 1.5E-10 69.1 8.5 56 81-140 2-57 (105)
33 PRK00260 cysS cysteinyl-tRNA s 97.9 0.00056 1.2E-08 72.3 17.1 74 78-151 23-111 (463)
34 PRK05710 glutamyl-Q tRNA(Asp) 97.9 4.9E-05 1.1E-09 75.9 8.3 169 86-283 13-242 (299)
35 PRK14895 gltX glutamyl-tRNA sy 97.8 0.00064 1.4E-08 72.5 15.7 192 80-304 4-269 (513)
36 PRK01406 gltX glutamyl-tRNA sy 97.8 0.001 2.2E-08 70.6 17.0 80 198-304 192-280 (476)
37 TIGR00464 gltX_bact glutamyl-t 97.7 0.0024 5.2E-08 67.8 19.4 69 209-304 196-270 (470)
38 TIGR00467 lysS_arch lysyl-tRNA 97.7 0.00018 3.9E-09 76.9 10.3 43 78-120 19-66 (515)
39 cd00668 Ile_Leu_Val_MetRS_core 97.4 0.00058 1.3E-08 68.2 9.1 63 87-150 11-100 (312)
40 cd00672 CysRS_core catalytic c 97.4 0.0014 2.9E-08 62.6 10.5 71 79-149 22-105 (213)
41 PRK12558 glutamyl-tRNA synthet 97.2 0.0092 2E-07 62.9 15.6 186 86-304 10-269 (445)
42 cd09287 GluRS_non_core catalyt 97.2 0.0025 5.3E-08 61.9 9.6 157 83-282 6-171 (240)
43 PLN02627 glutamyl-tRNA synthet 97.1 0.035 7.7E-07 59.6 19.1 66 80-151 47-113 (535)
44 cd00671 ArgRS_core catalytic c 97.1 0.0039 8.4E-08 59.0 9.9 149 82-235 6-184 (212)
45 PRK01611 argS arginyl-tRNA syn 97.0 0.00088 1.9E-08 71.6 5.3 183 82-293 117-335 (507)
46 cd00812 LeuRS_core catalytic c 97.0 0.0036 7.7E-08 62.8 9.2 64 87-150 11-87 (314)
47 cd00807 GlnRS_core catalytic c 96.9 0.0036 7.9E-08 60.7 8.1 154 86-283 9-170 (238)
48 COG1384 LysS Lysyl-tRNA synthe 96.9 0.0043 9.4E-08 65.6 9.0 47 77-123 19-70 (521)
49 TIGR03838 queuosine_YadB gluta 96.7 0.019 4.1E-07 56.8 12.0 169 86-283 8-235 (272)
50 PRK12410 glutamylglutaminyl-tR 96.7 0.044 9.5E-07 57.6 15.1 60 86-151 7-67 (433)
51 COG0008 GlnS Glutamyl- and glu 96.4 0.012 2.6E-07 62.4 8.7 174 81-283 10-256 (472)
52 PRK04156 gltX glutamyl-tRNA sy 96.3 0.029 6.3E-07 60.8 11.2 176 79-282 102-343 (567)
53 PLN03233 putative glutamate-tR 96.3 0.018 3.9E-07 61.7 9.3 67 80-151 11-79 (523)
54 TIGR00435 cysS cysteinyl-tRNA 96.2 0.037 8.1E-07 58.7 11.0 71 80-150 24-107 (465)
55 PTZ00402 glutamyl-tRNA synthet 95.8 0.11 2.4E-06 56.6 12.4 67 80-151 52-120 (601)
56 PLN02859 glutamine-tRNA ligase 95.4 0.056 1.2E-06 60.4 8.7 66 81-151 265-332 (788)
57 COG0162 TyrS Tyrosyl-tRNA synt 94.3 0.045 9.7E-07 57.0 4.2 107 260-377 216-359 (401)
58 PRK14535 cysS cysteinyl-tRNA s 94.3 2.3 4.9E-05 47.3 17.3 75 77-151 247-335 (699)
59 PLN02946 cysteine-tRNA ligase 93.9 0.34 7.5E-06 52.6 10.0 72 77-148 79-164 (557)
60 PF00749 tRNA-synt_1c: tRNA sy 93.2 0.16 3.4E-06 51.3 5.7 60 86-150 9-68 (314)
61 TIGR00234 tyrS tyrosyl-tRNA sy 92.7 0.27 5.9E-06 50.8 6.8 56 266-342 212-267 (377)
62 PTZ00437 glutaminyl-tRNA synth 91.1 0.64 1.4E-05 50.5 7.6 66 81-151 52-119 (574)
63 PF01921 tRNA-synt_1f: tRNA sy 90.7 0.083 1.8E-06 54.2 0.4 69 207-300 231-307 (360)
64 PRK05347 glutaminyl-tRNA synth 90.6 0.97 2.1E-05 49.0 8.3 89 81-174 30-133 (554)
65 PRK00133 metG methionyl-tRNA s 90.4 0.85 1.9E-05 50.6 8.0 75 77-151 2-90 (673)
66 COG0143 MetG Methionyl-tRNA sy 89.8 0.87 1.9E-05 49.5 7.2 73 79-151 7-93 (558)
67 TIGR00463 gltX_arch glutamyl-t 89.4 1 2.2E-05 49.0 7.4 67 79-151 92-161 (560)
68 TIGR00440 glnS glutaminyl-tRNA 89.1 0.81 1.8E-05 49.3 6.3 60 86-150 8-67 (522)
69 PF01921 tRNA-synt_1f: tRNA sy 87.9 0.68 1.5E-05 47.6 4.6 43 78-120 24-71 (360)
70 PRK12268 methionyl-tRNA synthe 87.5 1.4 3.1E-05 47.5 7.1 73 79-151 4-92 (556)
71 PF09334 tRNA-synt_1g: tRNA sy 86.8 1.5 3.2E-05 45.7 6.4 66 86-151 9-87 (391)
72 PLN02907 glutamate-tRNA ligase 86.8 1.6 3.5E-05 48.9 7.1 67 80-151 213-281 (722)
73 PRK14703 glutaminyl-tRNA synth 86.4 2.3 5E-05 48.0 8.0 67 80-151 31-99 (771)
74 PLN02224 methionine-tRNA ligas 86.1 3.6 7.7E-05 45.4 9.2 74 78-151 70-157 (616)
75 PRK05743 ileS isoleucyl-tRNA s 84.0 0.69 1.5E-05 53.2 2.7 59 207-291 542-603 (912)
76 cd00818 IleRS_core catalytic c 82.7 1.1 2.4E-05 45.5 3.3 36 87-122 12-52 (338)
77 PLN02610 probable methionyl-tR 82.3 6.2 0.00014 44.9 9.3 75 77-151 17-106 (801)
78 PRK12300 leuS leucyl-tRNA synt 82.2 0.67 1.5E-05 53.2 1.6 59 209-293 529-590 (897)
79 PRK00390 leuS leucyl-tRNA synt 82.1 3 6.5E-05 47.4 6.7 72 78-150 33-119 (805)
80 PRK11893 methionyl-tRNA synthe 81.8 4.6 0.0001 42.9 7.7 65 87-151 12-89 (511)
81 cd00814 MetRS_core catalytic c 81.6 2.8 6.1E-05 42.1 5.7 65 87-151 11-88 (319)
82 cd00817 ValRS_core catalytic c 81.0 0.97 2.1E-05 46.7 2.1 63 87-149 12-103 (382)
83 PRK14900 valS valyl-tRNA synth 80.4 1.3 2.8E-05 51.8 3.1 61 209-293 490-551 (1052)
84 TIGR00395 leuS_arch leucyl-tRN 79.5 0.98 2.1E-05 52.1 1.8 71 209-305 572-650 (938)
85 COG0495 LeuS Leucyl-tRNA synth 79.3 2 4.4E-05 48.7 4.1 73 77-150 34-121 (814)
86 PRK11893 methionyl-tRNA synthe 79.0 1 2.3E-05 47.8 1.7 60 209-293 253-312 (511)
87 TIGR00456 argS arginyl-tRNA sy 78.4 1.5 3.2E-05 47.8 2.6 63 212-300 330-392 (566)
88 PRK12267 methionyl-tRNA synthe 78.2 3.7 7.9E-05 45.4 5.7 72 80-151 6-92 (648)
89 TIGR00398 metG methionyl-tRNA 78.1 4.2 9.1E-05 43.7 6.0 65 87-151 10-87 (530)
90 PTZ00399 cysteinyl-tRNA-synthe 77.8 11 0.00025 41.8 9.3 80 199-302 257-342 (651)
91 PRK12418 cysteinyl-tRNA synthe 77.4 2.1 4.5E-05 44.6 3.3 74 78-151 9-97 (384)
92 TIGR00392 ileS isoleucyl-tRNA 77.2 1.6 3.5E-05 49.8 2.6 61 209-293 563-624 (861)
93 COG0495 LeuS Leucyl-tRNA synth 76.0 21 0.00045 40.8 10.7 64 209-293 525-592 (814)
94 cd00818 IleRS_core catalytic c 74.6 5.8 0.00013 40.3 5.6 58 209-292 251-311 (338)
95 PRK14536 cysS cysteinyl-tRNA s 74.4 17 0.00038 39.0 9.3 74 77-150 22-119 (490)
96 PRK05729 valS valyl-tRNA synth 73.4 2.3 4.9E-05 48.8 2.5 62 208-293 471-533 (874)
97 PLN02563 aminoacyl-tRNA ligase 73.0 14 0.0003 43.0 8.7 72 78-149 111-197 (963)
98 TIGR00396 leuS_bact leucyl-tRN 72.7 5.6 0.00012 45.5 5.4 71 79-149 31-115 (842)
99 cd00817 ValRS_core catalytic c 72.6 4.7 0.0001 41.6 4.5 60 209-292 295-355 (382)
100 PF00133 tRNA-synt_1: tRNA syn 72.4 2.2 4.8E-05 46.8 2.1 59 209-291 513-572 (601)
101 KOG1147 Glutamyl-tRNA syntheta 72.2 12 0.00025 40.7 7.2 65 80-151 200-268 (712)
102 PRK00390 leuS leucyl-tRNA synt 72.1 23 0.00049 40.4 10.1 23 209-231 522-545 (805)
103 PRK13208 valS valyl-tRNA synth 71.8 3.1 6.7E-05 47.2 3.1 60 210-293 486-546 (800)
104 TIGR03447 mycothiol_MshC cyste 71.3 3.3 7.1E-05 43.5 2.9 74 78-151 36-124 (411)
105 cd00814 MetRS_core catalytic c 70.6 2.6 5.7E-05 42.3 2.0 58 210-292 235-292 (319)
106 TIGR00422 valS valyl-tRNA synt 68.1 3.9 8.4E-05 46.8 2.9 61 209-293 477-538 (861)
107 COG0525 ValS Valyl-tRNA synthe 68.0 12 0.00025 42.9 6.5 22 385-407 656-677 (877)
108 PLN02959 aminoacyl-tRNA ligase 67.8 4.4 9.5E-05 47.6 3.3 60 209-293 670-731 (1084)
109 PLN02943 aminoacyl-tRNA ligase 67.6 4.3 9.3E-05 47.1 3.1 87 193-303 518-611 (958)
110 PRK13804 ileS isoleucyl-tRNA s 67.3 3.7 7.9E-05 47.7 2.5 16 207-222 580-595 (961)
111 PRK12267 methionyl-tRNA synthe 66.9 3 6.5E-05 46.1 1.6 59 210-293 254-312 (648)
112 KOG0436 Methionyl-tRNA synthet 66.1 18 0.0004 38.2 7.0 66 86-151 49-127 (578)
113 PTZ00419 valyl-tRNA synthetase 66.1 5.6 0.00012 46.3 3.7 61 208-292 536-597 (995)
114 PRK06039 ileS isoleucyl-tRNA s 65.8 4.5 9.7E-05 47.0 2.8 15 208-222 543-557 (975)
115 PLN02843 isoleucyl-tRNA synthe 65.4 4.3 9.2E-05 47.2 2.5 16 207-222 561-576 (974)
116 PLN02660 pantoate--beta-alanin 65.3 19 0.00042 36.0 6.8 69 209-307 145-213 (284)
117 COG0143 MetG Methionyl-tRNA sy 64.3 55 0.0012 35.9 10.6 30 254-291 315-344 (558)
118 PLN02381 valyl-tRNA synthetase 63.6 5.8 0.00013 46.6 3.2 59 209-292 607-667 (1066)
119 COG0018 ArgS Arginyl-tRNA synt 62.7 6.2 0.00013 43.2 3.1 68 211-301 336-404 (577)
120 PLN02563 aminoacyl-tRNA ligase 61.2 6.6 0.00014 45.6 3.1 28 208-235 614-642 (963)
121 COG0215 CysS Cysteinyl-tRNA sy 60.5 6.1 0.00013 42.0 2.5 79 197-299 208-292 (464)
122 PF01406 tRNA-synt_1e: tRNA sy 60.1 6.6 0.00014 39.5 2.5 39 197-235 193-232 (300)
123 PLN02882 aminoacyl-tRNA ligase 58.3 8.2 0.00018 45.7 3.2 76 191-290 547-624 (1159)
124 PLN02286 arginine-tRNA ligase 58.1 11 0.00024 41.3 4.0 65 212-296 330-394 (576)
125 TIGR00396 leuS_bact leucyl-tRN 57.0 8.1 0.00017 44.2 2.8 23 209-231 519-542 (842)
126 PRK12268 methionyl-tRNA synthe 56.9 6.5 0.00014 42.5 2.0 58 212-293 289-347 (556)
127 PTZ00419 valyl-tRNA synthetase 55.5 15 0.00033 42.8 4.8 44 79-122 62-111 (995)
128 PRK14536 cysS cysteinyl-tRNA s 54.9 7.2 0.00016 41.9 1.9 74 194-292 217-291 (490)
129 PRK13208 valS valyl-tRNA synth 53.5 18 0.00038 41.2 4.8 73 78-150 39-138 (800)
130 COG2442 Uncharacterized conser 53.1 29 0.00062 28.1 4.7 43 319-363 29-71 (79)
131 TIGR00398 metG methionyl-tRNA 52.3 9.3 0.0002 41.0 2.3 55 213-293 285-340 (530)
132 COG0525 ValS Valyl-tRNA synthe 50.6 10 0.00022 43.4 2.3 36 87-122 44-83 (877)
133 PLN02843 isoleucyl-tRNA synthe 49.7 34 0.00074 39.9 6.4 73 79-151 34-136 (974)
134 PLN02610 probable methionyl-tR 48.8 6.4 0.00014 44.8 0.3 57 213-292 304-360 (801)
135 PRK12451 arginyl-tRNA syntheta 47.9 18 0.00039 39.4 3.7 59 211-294 326-385 (562)
136 TIGR00018 panC pantoate--beta- 47.2 58 0.0013 32.6 6.8 69 209-307 142-210 (282)
137 KOG1149 Glutamyl-tRNA syntheta 46.8 35 0.00076 36.2 5.3 67 79-151 34-101 (524)
138 PF04048 Sec8_exocyst: Sec8 ex 46.6 2.1E+02 0.0045 25.3 10.3 85 321-411 19-105 (142)
139 KOG2007 Cysteinyl-tRNA synthet 46.5 10 0.00023 40.7 1.5 38 194-231 242-282 (586)
140 PLN02224 methionine-tRNA ligas 45.8 13 0.00029 41.1 2.2 59 210-293 321-379 (616)
141 PLN02943 aminoacyl-tRNA ligase 43.2 26 0.00057 40.8 4.2 45 79-123 90-140 (958)
142 PF00750 tRNA-synt_1d: tRNA sy 43.1 11 0.00024 38.5 1.1 73 211-304 240-312 (354)
143 PF05957 DUF883: Bacterial pro 42.9 97 0.0021 25.3 6.5 56 351-406 15-71 (94)
144 TIGR00422 valS valyl-tRNA synt 42.7 15 0.00032 42.1 2.1 45 78-122 34-84 (861)
145 PRK14534 cysS cysteinyl-tRNA s 42.1 12 0.00027 40.0 1.3 74 78-151 21-118 (481)
146 PF00133 tRNA-synt_1: tRNA syn 41.6 31 0.00067 37.9 4.2 46 78-123 24-75 (601)
147 KOG0435 Leucyl-tRNA synthetase 41.2 42 0.00092 37.6 5.0 76 72-148 52-142 (876)
148 TIGR03447 mycothiol_MshC cyste 39.8 1.1E+02 0.0023 32.4 7.7 72 196-291 227-299 (411)
149 TIGR00456 argS arginyl-tRNA sy 38.7 30 0.00066 37.7 3.6 41 80-120 116-162 (566)
150 PRK14900 valS valyl-tRNA synth 38.0 19 0.00042 42.3 2.1 46 78-123 49-100 (1052)
151 PTZ00427 isoleucine-tRNA ligas 38.0 24 0.00052 42.1 2.8 59 211-293 674-733 (1205)
152 COG0018 ArgS Arginyl-tRNA synt 37.6 33 0.0007 37.8 3.6 40 82-121 123-168 (577)
153 PRK00133 metG methionyl-tRNA s 37.2 13 0.00027 41.5 0.4 32 254-293 311-342 (673)
154 PRK05729 valS valyl-tRNA synth 37.2 20 0.00043 41.3 1.9 44 79-122 38-87 (874)
155 PF04255 DUF433: Protein of un 37.1 44 0.00095 24.9 3.2 38 319-358 17-54 (56)
156 PF00750 tRNA-synt_1d: tRNA sy 35.5 44 0.00096 34.2 4.0 39 82-120 26-70 (354)
157 PRK14534 cysS cysteinyl-tRNA s 34.1 1.1E+02 0.0023 33.1 6.7 67 201-292 224-291 (481)
158 PLN02381 valyl-tRNA synthetase 34.1 26 0.00056 41.3 2.3 45 78-122 129-179 (1066)
159 PRK12418 cysteinyl-tRNA synthe 33.2 1.4E+02 0.003 31.3 7.2 75 194-292 198-273 (384)
160 TIGR00392 ileS isoleucyl-tRNA 33.0 27 0.0006 40.0 2.2 45 78-122 37-87 (861)
161 PF09334 tRNA-synt_1g: tRNA sy 31.9 17 0.00038 37.7 0.4 30 254-291 309-338 (391)
162 PLN02413 choline-phosphate cyt 31.1 97 0.0021 31.2 5.4 32 68-104 17-51 (294)
163 PHA01929 putative scaffolding 30.9 3.3E+02 0.0071 27.2 8.8 56 318-373 116-180 (306)
164 PRK05743 ileS isoleucyl-tRNA s 30.5 30 0.00065 40.0 2.0 73 79-151 51-152 (912)
165 cd02168 NMNAT_Nudix Nicotinami 29.3 1.5E+02 0.0033 27.4 6.1 58 85-151 8-68 (181)
166 PRK10404 hypothetical protein; 28.8 2.2E+02 0.0047 24.1 6.5 56 351-406 22-78 (101)
167 PF00749 tRNA-synt_1c: tRNA sy 28.7 40 0.00086 34.0 2.3 67 194-283 183-249 (314)
168 PRK12451 arginyl-tRNA syntheta 27.8 54 0.0012 35.8 3.3 39 82-120 119-163 (562)
169 COG0060 IleS Isoleucyl-tRNA sy 27.7 37 0.0008 39.4 2.1 27 267-302 594-620 (933)
170 cd00560 PanC Pantoate-beta-ala 27.5 70 0.0015 31.9 3.8 68 210-307 141-208 (277)
171 TIGR00395 leuS_arch leucyl-tRN 27.5 32 0.00069 40.0 1.6 36 79-114 27-67 (938)
172 PLN02286 arginine-tRNA ligase 26.3 50 0.0011 36.3 2.7 39 82-120 123-167 (576)
173 PLN02959 aminoacyl-tRNA ligase 24.4 43 0.00093 39.6 1.9 27 87-113 56-86 (1084)
174 COG4320 Uncharacterized protei 24.3 82 0.0018 32.4 3.5 32 88-125 62-94 (410)
175 PRK13804 ileS isoleucyl-tRNA s 23.9 51 0.0011 38.4 2.4 45 78-122 55-105 (961)
176 KOG0437 Leucyl-tRNA synthetase 23.5 1.1E+02 0.0025 34.8 4.7 32 354-390 788-819 (1080)
177 PRK06039 ileS isoleucyl-tRNA s 23.4 52 0.0011 38.4 2.3 45 78-122 42-92 (975)
178 PF09551 Spore_II_R: Stage II 23.1 2.5E+02 0.0054 24.9 6.0 49 351-403 19-67 (130)
179 PRK00380 panC pantoate--beta-a 22.7 78 0.0017 31.6 3.1 69 209-307 139-207 (281)
180 PF12057 DUF3538: Domain of un 21.5 51 0.0011 28.9 1.3 46 360-408 10-55 (120)
181 KOG1148 Glutaminyl-tRNA synthe 21.5 1.2E+02 0.0026 33.6 4.3 95 79-180 247-357 (764)
182 PTZ00399 cysteinyl-tRNA-synthe 21.5 3.8E+02 0.0082 30.0 8.4 73 78-150 60-148 (651)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-100 Score=775.22 Aligned_cols=356 Identities=79% Similarity=1.220 Sum_probs=331.7
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHH
Q 015067 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (413)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~ 136 (413)
+|+++.++..+.++.+.+.+.+.+|||||||||.+|||||+|++++|++||+.++++||||||||+|.+.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444444555556666666667999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCC------cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccc
Q 015067 137 ETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 210 (413)
Q Consensus 137 ~~~a~~lA~GiDp~k------S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~ 210 (413)
+++++|+||||||+| |+|++|+||+|+|+|.++++||+||+|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 999999999999998 99999999999999999999999999999998776546789999999999999999999
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015067 211 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 290 (413)
Q Consensus 211 adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~ 290 (413)
+|+||||+||+||+|||||||+|||+.||...++++|.+...+|++|++++++.+++||||+||++|||||+|+++|+||
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998766667776667899999999987668999999888899999998789999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhchHHH
Q 015067 291 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 370 (413)
Q Consensus 291 L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~pire 370 (413)
|+|+|++|++|||+|+||+.++++++++++|+++|++.+|..|++.+++|++++|.++++++||+.|+++|+++|.|||+
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire 344 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV 344 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015067 371 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 371 r~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus 345 r~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 345 RYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999963
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-98 Score=717.05 Aligned_cols=325 Identities=54% Similarity=0.847 Sum_probs=315.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhccc----EEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC--
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-- 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~----~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k-- 151 (413)
+.+|||||||||.+|||||+|++++|++||+.+| |+|+|+|+||+|.|.+|.++++++.++++.++||||||+|
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 6799999999999999999999999999999865 6999999999999999999999999999999999999999
Q ss_pred ----cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHH
Q 015067 152 ----SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 227 (413)
Q Consensus 152 ----S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLa 227 (413)
|+|++|+|++|+|+|.++++||+||+|||+|+.+.+...+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 9999999999999999999999999999999976666789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccC
Q 015067 228 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 307 (413)
Q Consensus 228 RdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~T 307 (413)
|++|++||+.||+ ++|++|+.++.....+||||.||.+|||||+|++.++|+|+|+|+.|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 9999999999996 67999999998766899999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHH
Q 015067 308 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 387 (413)
Q Consensus 308 d~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~ 387 (413)
|....++||+.+||+|+|+++||+.+++.+++|+.+++.+++++++|..|||+|+++|.|||++|+++.++++|+++||+
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~ 321 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLE 321 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 388 DGAAKAADIADATLNNVYQAMGFLRR 413 (413)
Q Consensus 388 ~Ga~kAr~iA~~tl~~v~~a~Gl~~~ 413 (413)
+|++|||++|.+||.+||+.|||..+
T Consensus 322 ~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 322 EGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999754
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-92 Score=720.41 Aligned_cols=315 Identities=36% Similarity=0.606 Sum_probs=294.1
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhh--cccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC----
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK---- 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~--~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k---- 151 (413)
..+|||||||||.+|||||+|++++|+++|+ .++++||||||||+|++.+++.+++++++++++|+||||||+|
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3689999999999999999999999999976 5899999999999998889999999999999999999999999
Q ss_pred --cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhh---C---CCCccchhhhhhHHHHHhhhccccceeccccchHHH
Q 015067 152 --SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 223 (413)
Q Consensus 152 --S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~---~---~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 223 (413)
|+|++|+||+|+|+|++++++|+||+|||++.... + .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 99999999999999999999999999999875432 1 245899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015067 224 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303 (413)
Q Consensus 224 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 303 (413)
+|||||||+|||+.||. ++|++|++++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 99999999999999973 57999999998767899999 56 6999998 489999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHH
Q 015067 304 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 381 (413)
Q Consensus 304 kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~-~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 381 (413)
+|+||+.. .+++++|++||+|+||++|++ +++++++++|. +++|++||+.|+++|+++|+|||+||+++++|++|
T Consensus 226 ~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~ 302 (431)
T PRK12284 226 SIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPAD 302 (431)
T ss_pred cCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999875 245789999999999999975 67999999997 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 382 LDKVLADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 382 l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|++||++|++|||++|++||++||++|||.
T Consensus 303 l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 303 IEDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999999999985
No 4
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-91 Score=698.70 Aligned_cols=322 Identities=57% Similarity=0.937 Sum_probs=304.9
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
++++|||++|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|||+||+|
T Consensus 1 ~~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~q 80 (333)
T PRK00927 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQ 80 (333)
T ss_pred CCEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEe
Confidence 36899999999999999999999999999999999999999999999889999999999999999999999998
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|.||+|+++|++++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 81 S~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia 159 (333)
T PRK00927 81 SHVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIA 159 (333)
T ss_pred CCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHH
Confidence 999999999999999999999999999998865433 6889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||++|| .+|++|+++++..+++||||+++++|||||++++.|+|+|+|+|++|++||++|+||+..
T Consensus 160 ~~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 160 RRFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred HHhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 99999998 579999999976567999997666799999987779999999999999999999999977
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHH
Q 015067 312 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 387 (413)
Q Consensus 312 --~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~ 387 (413)
.+.++++++|++||+++||++|++++++|++++|. +++|++||+.|+++|+++|.|+|+||+++++|++||++||+
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~ 307 (333)
T PRK00927 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILA 307 (333)
T ss_pred ccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 34578899999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Q 015067 388 DGAAKAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 388 ~Ga~kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
+|++|||++|++||++||++|||.+
T Consensus 308 ~G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 308 EGAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999964
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.4e-91 Score=695.82 Aligned_cols=314 Identities=38% Similarity=0.622 Sum_probs=292.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhccc--EEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC----
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK---- 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~--~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k---- 151 (413)
+.+|||||||||.+|||||+|++++|+++|+.++ ++||||||||+|.+++++.+++++++++++|+||||||+|
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 4699999999999999999999999999998765 9999999999987889999999999999999999999999
Q ss_pred --cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC------CCCccchhhhhhHHHHHhhhccccceeccccchHHH
Q 015067 152 --SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 223 (413)
Q Consensus 152 --S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 223 (413)
|+|++|++|+|+|+|.+++|||+||+|||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 999999999999999999999999999999865321 246799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015067 224 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303 (413)
Q Consensus 224 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 303 (413)
+|||||||+|||++|| .+|++|++++++..+++||| +| +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 9999999999999998 67999999986655799999 67 69999984 78999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHH
Q 015067 304 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 381 (413)
Q Consensus 304 kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~-~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 381 (413)
+|+||+.+ .+.+++|++||+|+||++|.+ +++++++++|. +++|++||+.|++.|+++|.|+|+||+++++|++|
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~ 302 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSL 302 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999865 245789999999999999975 57999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 382 LDKVLADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 382 l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|++||++|++|||++|++||++||++|||.
T Consensus 303 ~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 303 LDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999983
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-90 Score=696.42 Aligned_cols=327 Identities=36% Similarity=0.614 Sum_probs=299.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC-----
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK----- 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k----- 151 (413)
+.+|||||||||.+|||||+|++++|+++|+.++++||||||||+|++. +++.+++++++++++|+|||+||+|
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3589999999999999999999999999999999999999999999854 9999999999999999999999999
Q ss_pred -cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHH
Q 015067 152 -SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 229 (413)
Q Consensus 152 -S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRd 229 (413)
|++++|+||+|+|+|.+++++|+||+|||++..+.. .++.++|+|+||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 999999999999999999999999999999876531 357899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCcccc----------------------------------------------------------ccCCCCC
Q 015067 230 LAERVNYLYGGRKWK----------------------------------------------------------KLGGRGG 251 (413)
Q Consensus 230 iA~r~n~~yg~~~~~----------------------------------------------------------~~g~~~~ 251 (413)
||+|||+.||...+. -..+.++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 999999999852111 0123555
Q ss_pred ccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHH
Q 015067 252 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 331 (413)
Q Consensus 252 ~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~ 331 (413)
.+|+.|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++||++|+||+.....++ +++|++||+++||+
T Consensus 242 ~~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~-~g~Pe~~nl~~i~~ 314 (398)
T PRK12283 242 IILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTD-PGDPEKCPVWQLHQ 314 (398)
T ss_pred cccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCC-CCCCCcCHHHHHHH
Confidence 689999999955 5899999 77 7999996 4899999999999999999999988755555 49999999999999
Q ss_pred hcCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015067 332 LISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 408 (413)
Q Consensus 332 ~~~~~-~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~v~~a~ 408 (413)
+|+++ +++++.++|+ +++|++||+.|++.|+++|.||||||.++++|+++|++||++|++|||++|++||++||++|
T Consensus 315 ~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~ 394 (398)
T PRK12283 315 VYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAM 394 (398)
T ss_pred HhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99877 5899999997 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 015067 409 GFL 411 (413)
Q Consensus 409 Gl~ 411 (413)
||.
T Consensus 395 g~~ 397 (398)
T PRK12283 395 GLS 397 (398)
T ss_pred CCC
Confidence 996
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-89 Score=672.12 Aligned_cols=300 Identities=52% Similarity=0.803 Sum_probs=285.7
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCH--HHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~--~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
..+++||||+||||.||||||+|++++|+.+|+. ++|||||||+||+|.+.++ +.+++++++++++||||||||+|
T Consensus 3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3578999999999999999999999999999999 5999999999999998766 99999999999999999999999
Q ss_pred -----cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHH
Q 015067 152 -----SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 226 (413)
Q Consensus 152 -----S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleL 226 (413)
|+|++|+||+|+|+|.+++|||+||++||+++.+.+ +++++|+|.||+|||||||+|++++||||.||+||+||
T Consensus 83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 999999999999999999999999999999987765 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhcc
Q 015067 227 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306 (413)
Q Consensus 227 aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~ 306 (413)
|||||+|||+.|| .+|++|+++++.. +++|||+|+ +|||||+|+ |+|||+|+|++|++||++|.
T Consensus 162 tRDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~ 225 (314)
T COG0180 162 TRDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAA 225 (314)
T ss_pred HHHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhc
Confidence 9999999999999 6899999999887 899999776 899999985 89999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHhc--CCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHH
Q 015067 307 TDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 383 (413)
Q Consensus 307 Td~~~~i~~~~~~rpev~~ll~i~~~~~-~~~~eel~~~~~~--~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~ 383 (413)
||+...++++++++||+||+|+||.+|+ +++.+|++++|.+ ++|++||+.|++.|+++|.|||+||+++++|++|++
T Consensus 226 td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~ 305 (314)
T COG0180 226 TDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLD 305 (314)
T ss_pred cCCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9996667788889999999999999999 9999999999985 999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015067 384 KVLADGAAK 392 (413)
Q Consensus 384 ~iL~~Ga~k 392 (413)
++|.+|++|
T Consensus 306 ~il~~g~~k 314 (314)
T COG0180 306 DILRKGAEK 314 (314)
T ss_pred HHHhccCCC
Confidence 999999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.2e-87 Score=673.33 Aligned_cols=317 Identities=34% Similarity=0.518 Sum_probs=297.9
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC-----
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK----- 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k----- 151 (413)
+.+||||++|||.+|||||+|++++|++||+.++++|+||||||+|+ +.+++++++++++++++|+||||||+|
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999999999999999999997 679999999999999999999999998
Q ss_pred -cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHH
Q 015067 152 -SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 229 (413)
Q Consensus 152 -S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRd 229 (413)
|++++|+++.|+++|+++++|++|+++||++....+ ++++++|+|+||+||||||++|++|+||||+||+||+|||||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 999999999999999999999999999998765443 467899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCC
Q 015067 230 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 309 (413)
Q Consensus 230 iA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~ 309 (413)
||+|||++||+ ++|..|++++.. +++|||| +|.+|||||++ |+|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 99999999985 568899988865 4799999 66689999984 69999999999999999999998
Q ss_pred CCCcccCCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHH
Q 015067 310 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 385 (413)
Q Consensus 310 ~~~i~~~~~~rpev~~ll~i~~~~--~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 385 (413)
.. +.++++++|++||+++|+++| +++++++++++|. +++++|||+.|+++|+++|.|+|+||+++++|++||++|
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~v 304 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEI 304 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 54 778889999999999999999 5789999999997 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 386 LADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 386 L~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|+.|++|||++|++||++||++|||.
T Consensus 305 l~~G~~ka~~~A~~~~~~v~~~~g~~ 330 (333)
T PRK12282 305 LKAGSEKAREVAAQTLSEVKDAMGLN 330 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999995
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=3.6e-85 Score=654.57 Aligned_cols=313 Identities=47% Similarity=0.678 Sum_probs=291.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
+++++|||++|||.+|||||+|+++.|..+|..++++|+||||||+|++. +++.++.++++++++|+||||||+|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999998888899999999999999866 8899999999999999999999999
Q ss_pred ---cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHH
Q 015067 152 ---SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 228 (413)
Q Consensus 152 ---S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaR 228 (413)
|++++|+|+.|+|+|.+|++||+|+++||++.. .+++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999998752 26789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCC
Q 015067 229 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308 (413)
Q Consensus 229 diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td 308 (413)
|||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCC
Confidence 99999999998 57999999998766789999 45 799999974 8999999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhcC-----CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHH
Q 015067 309 SSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 381 (413)
Q Consensus 309 ~~~~i~~~~~~rpev~~ll~i~~~~~-----~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 381 (413)
+.+.+.|+++++|++++++.+|+++. ++++++++++|. +++|++||+.|+++|+++|+|||+||+++++| +
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~ 299 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--I 299 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99888888888998888888887764 346899999996 47899999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015067 382 LDKVLADGAAKAADIADATLNNVYQAMGF 410 (413)
Q Consensus 382 l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl 410 (413)
|+++|..|+++||++|++||++||++|||
T Consensus 300 ~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 300 LDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3.4e-72 Score=550.34 Aligned_cols=268 Identities=46% Similarity=0.751 Sum_probs=251.1
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhh-cccEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
++|||++|||.+|||||+|++.+|++||+ .++++|+|||+||+|++. +++.+++++++++++|+|+|+||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 589999999999999977 9999999999999999999999988
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||+||+||+||+||||
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 8899999999999999999999999999998653 36889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||++|| ++|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+.+
T Consensus 159 ~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 99999998 679999999985 5799999877789999996 59999999999999999999999988
Q ss_pred CcccCCCCCCccchHHHHHHhcCCCCHHHHH--HHHh--cCCcchHHHHHHHHHHHh
Q 015067 312 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 364 (413)
Q Consensus 312 ~i~~~~~~rpev~~ll~i~~~~~~~~~eel~--~~~~--~~~~~dlK~~Lae~I~~~ 364 (413)
.+.++.+++|+++|+++||.+|++.+.++++ ++|. ++++++||+.||++|+++
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7788899999999999999999988888888 7775 689999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.5e-71 Score=561.26 Aligned_cols=279 Identities=28% Similarity=0.344 Sum_probs=256.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
+++++|||++|||.||||||++ +.+|++||+. ++++|+||||||+|+ +.+++++++++++++++|+||||||+|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999986 6799999996 799999999999998 579999999999999999999999998
Q ss_pred ---cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhc------cccceeccccchHH
Q 015067 152 ---SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 222 (413)
Q Consensus 152 ---S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~------~~adlVpvG~DQ~~ 222 (413)
|+++++.++.|.++|.+++++++|+.+|+ +++++|+++||+|||||||+ |++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 88888999999999999999999998886 56899999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 015067 223 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 302 (413)
Q Consensus 223 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI 302 (413)
|+|||||||+|||+.|| |++|.+++++ ++|||+ | +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL~-G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGLT-G-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCCC-C-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999998 8999999875 999994 5 69999997 59999999999999999
Q ss_pred hhccCCCCCCcccCC--CCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHH
Q 015067 303 KRCKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEI 375 (413)
Q Consensus 303 ~kA~Td~~~~i~~~~--~~rpev~~ll~i~~~~~---~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~ 375 (413)
++|+||+..++++++ +++|++|++++|+++|. +++++|++++|. +++|++||+.|+++|+++|+|+|+||+++
T Consensus 275 ~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~ 354 (368)
T PRK12285 275 MKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA 354 (368)
T ss_pred HhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876644 68999999999999874 578999999997 48999999999999999999999999988
Q ss_pred hcCHHHHHHHHHH
Q 015067 376 MSDSAYLDKVLAD 388 (413)
Q Consensus 376 ~~d~~~l~~iL~~ 388 (413)
++ .|++.+..
T Consensus 355 ~~---~~~~~~~~ 364 (368)
T PRK12285 355 RE---ILEKYLYD 364 (368)
T ss_pred HH---HHHHhhcc
Confidence 74 56655543
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-66 Score=521.64 Aligned_cols=260 Identities=27% Similarity=0.395 Sum_probs=233.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhh-cccEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
+++++|||++|||.+|||||++ +.+|++||+ .++++|+||||||+|++ .+++.+++++++++++|+|+|+||+|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 4789999999999999999874 789999999 58999999999999985 69999999999999999999999998
Q ss_pred ---cchhcchhHHHH----HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHH
Q 015067 152 ---SHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 224 (413)
Q Consensus 152 ---S~i~~~~el~w~----L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hl 224 (413)
|++++|.+ +|. |+|.+++++++|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 108 ~~qS~~~~~~~-~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 108 VLGSEFQLDKE-YWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred Eecchhhccch-HHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 88888876 554 9999999999999998753 2 1 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 015067 225 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304 (413)
Q Consensus 225 eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~k 304 (413)
+||||||+||| +.+|.+++. ++||||+++++|||||+| +|+|+|+|+|++|++||++
T Consensus 183 ~l~Rdia~~~n------------------~~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~k 239 (329)
T PRK08560 183 MLAREVLPKLG------------------YKKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239 (329)
T ss_pred HHHHHhhHhcC------------------CCCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHh
Confidence 99999999998 346877775 499999766679999997 5999999999999999999
Q ss_pred ccCCCCCCcccCCCCCCccchHHHHHHhcCC--------------------CCHHHHHHHHh--cCCcchHHHHHHHHHH
Q 015067 305 CKTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKPLLTDALI 362 (413)
Q Consensus 305 A~Td~~~~i~~~~~~rpev~~ll~i~~~~~~--------------------~~~eel~~~~~--~~~~~dlK~~Lae~I~ 362 (413)
|+||+ ++|+.||+++|+++|.. ++++|++++|. .++|++||+.|+++|+
T Consensus 240 A~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~ 310 (329)
T PRK08560 240 AYCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLI 310 (329)
T ss_pred ccCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99975 46889999999998742 57899999997 4789999999999999
Q ss_pred HhhchHHHHHHH
Q 015067 363 EHLHPIQVRYEE 374 (413)
Q Consensus 363 ~~L~pirer~~~ 374 (413)
++|+|||++|++
T Consensus 311 ~~l~pir~~~~~ 322 (329)
T PRK08560 311 EILEPVREYLEE 322 (329)
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-66 Score=525.84 Aligned_cols=264 Identities=24% Similarity=0.351 Sum_probs=231.6
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
++++||+|++|||.+||||++..+.+|++||+. ++++|+||||||+|++ .+++++++++++++++|+|+|+||+|
T Consensus 65 ~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~ 144 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNV 144 (383)
T ss_pred CCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 568999999999999999944333489999996 8999999999999984 59999999999999999999999998
Q ss_pred -----cc-hhcchhHHHHHhcc----ccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchH
Q 015067 152 -----SH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 221 (413)
Q Consensus 152 -----S~-i~~~~el~w~L~~~----~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 221 (413)
|+ +++|++++|++.+. +++++++|+.+++++.. .++.++|+|+||+||||||++|++|+||||.||+
T Consensus 145 ~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ~ 221 (383)
T PTZ00126 145 RFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQR 221 (383)
T ss_pred EEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccHH
Confidence 75 88899999987765 59999999999986432 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015067 222 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 222 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
||++||||+|++||+. ++|..++. ++||||+||++|||||+| +++|+|+|+|++|++|
T Consensus 222 ~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~kK 279 (383)
T PTZ00126 222 KVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNRK 279 (383)
T ss_pred HHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHHH
Confidence 9999999999999853 24555433 699999888899999997 4899999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHhcC--------------------CCCHHHHHHHHh--cCCcchHHHHHHH
Q 015067 302 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NMNWGTFKPLLTD 359 (413)
Q Consensus 302 I~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~--------------------~~~~eel~~~~~--~~~~~dlK~~Lae 359 (413)
||+|+||+ ++++.||+++|++++. +.++++++++|. .++|++||+.||+
T Consensus 280 I~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae 350 (383)
T PTZ00126 280 IKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAK 350 (383)
T ss_pred HHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999964 4567889999998632 258999999997 4889999999999
Q ss_pred HHHHhhchHHHHHHH
Q 015067 360 ALIEHLHPIQVRYEE 374 (413)
Q Consensus 360 ~I~~~L~pirer~~~ 374 (413)
+|+++|.|||++|+.
T Consensus 351 ~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 351 YLNLMLQPVRDHFQN 365 (383)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999974
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-62 Score=526.66 Aligned_cols=275 Identities=23% Similarity=0.366 Sum_probs=239.4
Q ss_pred CCceEEEecCCCCcchhhh-HHHHHHHHHHHhhcccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGn-ylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
.++++||||+|||.+|||| ++++++.|+.+|+.++++||||||||+|++ .+++.++.++++++++|+|+|+||+|
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 3579999999999999999 467777888778889999999999999974 38899999999999999999999998
Q ss_pred -----cc-hhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC--CCCccchhhhhhHHHHHhhhccccceeccccchHHH
Q 015067 152 -----SH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 223 (413)
Q Consensus 152 -----S~-i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~--~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 223 (413)
|+ +++|++++|++ +++++++.++.++|++.+..+ .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 64 88899999998 688999999999998644222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015067 224 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303 (413)
Q Consensus 224 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 303 (413)
+|||||+|++||+. ++|..+.. ++||||+||++|||||+| +|+|+|+|+|++|++||+
T Consensus 189 ~eLaRdia~~~g~~-----------------~kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRK-----------------LKPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCC-----------------CCceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 99999999998842 23543333 699999877789999997 499999999999999999
Q ss_pred hccCCCCC--CcccCCCCCC----ccchHHHHHHhcC-----------C---CCHHHHHHHHh--cCCcchHHHHHHHHH
Q 015067 304 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS-----------G---KTKGEVAEECQ--NMNWGTFKPLLTDAL 361 (413)
Q Consensus 304 kA~Td~~~--~i~~~~~~rp----ev~~ll~i~~~~~-----------~---~~~eel~~~~~--~~~~~dlK~~Lae~I 361 (413)
+|+||+.+ .++..++++| +.||+|+||+++. + +++++++++|. +++|++||+.|+++|
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l 326 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEV 326 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999863 4566777888 8899999999872 2 68899999996 588999999999999
Q ss_pred HHhhchHHHHHHHH
Q 015067 362 IEHLHPIQVRYEEI 375 (413)
Q Consensus 362 ~~~L~pirer~~~~ 375 (413)
+++|+|||++|++-
T Consensus 327 ~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 327 NALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999853
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-60 Score=482.33 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=234.0
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc--ccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKS 152 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~kS 152 (413)
.++++|||++|||. |||||+++++ ...+||++ ..++|+|+|+|+++. ..+++++++++++++++|+|+|+||+|+
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt 150 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERT 150 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 36899999999995 9999999986 33349987 568999999999998 4599999999999999999999999996
Q ss_pred chhcchhHH---HHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhh------cccc-----ceeccc
Q 015067 153 HVRAHVELM---WLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DFVPVG 217 (413)
Q Consensus 153 ~i~~~~el~---w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl------~~~a-----dlVpvG 217 (413)
.|..+.++. |++. +-++.|+.+++++.+.+| .++.++|+++||+||||||| +++. |+||||
T Consensus 151 ~I~s~~~~~~~~~~~~----~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG 226 (383)
T PLN02486 151 FIFSDFDYVGGAFYKN----MVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCA 226 (383)
T ss_pred EEEeccHHHhHhHHHH----HHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecc
Confidence 665443321 2222 226789999999988776 45789999999999999998 4554 999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 015067 218 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 297 (413)
Q Consensus 218 ~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~ 297 (413)
+||+||++||||||+||| +.+|..+++ +++|+|+++.+|||||+| +|+|+|+|+|++
T Consensus 227 ~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D~p~~ 283 (383)
T PLN02486 227 IDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP--NSAIYVTDTPKE 283 (383)
T ss_pred cchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccCCHHH
Confidence 999999999999999998 346876654 499999877689999997 489999999999
Q ss_pred HHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHH
Q 015067 298 IANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQV 370 (413)
Q Consensus 298 I~~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~~--~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pire 370 (413)
|++||++ |+||+..+++++. +++|+++++|+||.+|. +++++|++++|. ++++++||+.|++.|+++|+|+|+
T Consensus 284 i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qe 363 (383)
T PLN02486 284 IKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQR 363 (383)
T ss_pred HHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999998876533 68999999999999995 467999999996 589999999999999999999999
Q ss_pred HHHHHhc
Q 015067 371 RYEEIMS 377 (413)
Q Consensus 371 r~~~~~~ 377 (413)
||+++.+
T Consensus 364 rr~~~~~ 370 (383)
T PLN02486 364 ARAAVTD 370 (383)
T ss_pred HHHHHHH
Confidence 9999864
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2.6e-58 Score=453.74 Aligned_cols=269 Identities=35% Similarity=0.528 Sum_probs=237.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC---CHHHHHHHHHHHHHH--HHHcCCCCC
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~--~lA~GiDp~ 150 (413)
+++++|+||+|||.|||||+ +.+.+|++||+. ++++|+||||||++++. +++.++.++.+++.. |+|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l-~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHL-VPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHH-HHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHH-HHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 57899999999999999955 557899999975 89999999999999854 599999999999999 999999999
Q ss_pred C------cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhccccceeccccchHHH
Q 015067 151 K------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 223 (413)
Q Consensus 151 k------S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~h 223 (413)
+ |+++++.++.|++.++.++++++|+.++++...+.+ ++++++|+|+||+||||||+++++|+||||.||++|
T Consensus 83 k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~ 162 (292)
T PF00579_consen 83 KTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGH 162 (292)
T ss_dssp TEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHH
T ss_pred ceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHH
Confidence 8 888899999999999999999999999999666655 358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 015067 224 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303 (413)
Q Consensus 224 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 303 (413)
++++||+|+|||++. .|++|..++++ ++|+| +|.+|||||+++ ++|+|+|++++|++||+
T Consensus 163 ~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 163 IELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccchhHHHHHH
Confidence 999999999999762 38899999986 99998 676799999974 89999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccch-HHHHHHhcCC----CCHHHHHHHHh--cCCcchHHHHHHHHHHHhhc
Q 015067 304 RCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 366 (413)
Q Consensus 304 kA~Td~~~~i~~~~~~rpev~~-ll~i~~~~~~----~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~ 366 (413)
+|+|++...+......+|.+++ +++++..+.+ .+++++.++|. .+|++++|++++++++++|+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 223 KAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9999998755555557788888 8888887753 35799999997 47999999999999999874
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.7e-56 Score=437.75 Aligned_cols=242 Identities=26% Similarity=0.394 Sum_probs=214.7
Q ss_pred eEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 015067 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (413)
Q Consensus 80 ~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~----------~~~~i~~~~~~~~a~~lA~Gi 147 (413)
.||+||+||| .+|||||+| +.+|++||+. ++++|+|||+||++++. +++.+++++++++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 7899999994 89999999999999843 799999999999999999999
Q ss_pred C--CCC------cchh---cchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcccc----c
Q 015067 148 D--NSK------SHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 212 (413)
Q Consensus 148 D--p~k------S~i~---~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~a----d 212 (413)
| |++ |+++ ++.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 988 8888 7899999999999999999999999764 2 57899999999999999999988 9
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015067 213 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 292 (413)
Q Consensus 213 lVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~ 292 (413)
+||||.||+||++++||+|+|||. |+.|..++.+ +|||| +| .|||||+++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 6678888874 99999 56 49999987422235579
Q ss_pred CCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHH----HHhcCCcchHHHHHHHHHHHh
Q 015067 293 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDALIEH 364 (413)
Q Consensus 293 D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~----~~~~~~~~dlK~~Lae~I~~~ 364 (413)
|+|++|++||++|+ .++++.|+++|++.+.+||++ .|++.+++++|+.||+.|+++
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999 368899999998888887777 555667899999999999863
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=9.3e-57 Score=438.83 Aligned_cols=243 Identities=23% Similarity=0.274 Sum_probs=213.7
Q ss_pred ceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 015067 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (413)
Q Consensus 79 ~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA~G 146 (413)
.++|+||+||| .+|||||+++ .+|++||+. ++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999985 599999995 799999999999997 5 589999999999999999999
Q ss_pred CC--CCC------cchhcchhHHHH----HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcccccee
Q 015067 147 ID--NSK------SHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 214 (413)
Q Consensus 147 iD--p~k------S~i~~~~el~w~----L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlV 214 (413)
+| |+| |++++| ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 988 666666 5787 9999999999999999976532 267899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce-eecCC
Q 015067 215 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 293 (413)
Q Consensus 215 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~-I~L~D 293 (413)
|||.||++|++++||+|+|||. ..|..+.. ++||+| +| .|||||+++ +. |+++|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 9999999999999999999972 23545544 499999 56 599999974 33 79999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhc-CCcchHHHHHHHHHHHh
Q 015067 294 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEH 364 (413)
Q Consensus 294 ~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~-~~~~dlK~~Lae~I~~~ 364 (413)
+|++|++||++|+|| ++.+++.++.++++++++|++++|.. -.++++|+.||++|+++
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 999999999999986 56889999998889999999999983 23999999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.6e-49 Score=405.28 Aligned_cols=254 Identities=20% Similarity=0.220 Sum_probs=214.1
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 144 (413)
.++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+++ |. +.+.+++|+.++ ...+|
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHH
Confidence 46899999999995 99999997 6799999997 789999999999996 42 567888888765 44569
Q ss_pred cCCCCCC--------cchhcchhHHHHHh---ccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc----
Q 015067 145 CGIDNSK--------SHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 209 (413)
Q Consensus 145 ~GiDp~k--------S~i~~~~el~w~L~---~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 209 (413)
+|+||++ |+++++.++.|+|. +.+++++|.++.+||.+.. . ++++++|+|+||+||||||+++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~-~-~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLR-E-GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhc-c-CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999976 66677778889877 7888888888888886542 1 2578999999999999999999
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
++|+||||.||++|++++||+|+|||.. .+..+.. ++|+++ +| +|||||+ +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999831 1223333 588998 67 7999997 5899
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhh
Q 015067 290 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 365 (413)
Q Consensus 290 ~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L 365 (413)
+|+| +|++|++||+++- ++++.+++.+|.+++.+++++++++|. +.+++++|+.||++|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v~~~l 308 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNIS-------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAEEITALV 308 (408)
T ss_pred eCCCCCCCHHHHHHHHhcCC-------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999 9999999999952 346788888888888899999999995 5589999999999999999
Q ss_pred chHHHHHH
Q 015067 366 HPIQVRYE 373 (413)
Q Consensus 366 ~pirer~~ 373 (413)
+...+.-+
T Consensus 309 hg~~~~~~ 316 (408)
T PRK05912 309 HGEEAAEA 316 (408)
T ss_pred CCHHHHHH
Confidence 99755433
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-46 Score=384.88 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=208.4
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 144 (413)
+++++|+||+|||. +||||+++ +.+|.+||+. ++++|+|||+||+++ | .+.+++++|+..+.+.+.+
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK 110 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999995 99999877 6789999998 789999999999996 3 2567899999988888766
Q ss_pred cCCCCCC------cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhcc----ccce
Q 015067 145 CGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSDF 213 (413)
Q Consensus 145 ~GiDp~k------S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~----~adl 213 (413)
|+||++ |+...+.++.|+|.++.....++||.++++...+.+ +.++++++|+||+|||+|++++ ++|+
T Consensus 111 -~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~i 189 (410)
T PRK13354 111 -LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVDL 189 (410)
T ss_pred -hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCCE
Confidence 999998 666666677777765555556667777766555553 3578999999999999999999 9999
Q ss_pred eccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 015067 214 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 293 (413)
Q Consensus 214 VpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D 293 (413)
+|||.||++|++++||+|+|+|.. .|..+.. |.|+++ ||+ |||||. +|+|+|+|
T Consensus 190 q~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~d 243 (410)
T PRK13354 190 QIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLDP 243 (410)
T ss_pred EEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCceeccC
Confidence 999999999999999999999843 2434443 488998 775 999997 48999999
Q ss_pred C---HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---CCCHHHHHHHHhc-CCcchHHHHHHHHHHHhhc
Q 015067 294 P---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---GKTKGEVAEECQN-MNWGTFKPLLTDALIEHLH 366 (413)
Q Consensus 294 ~---pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~---~~~~eel~~~~~~-~~~~dlK~~Lae~I~~~L~ 366 (413)
+ |++|++||+++- + +.+++|+.+|+ .+++++++++|.. .+++++|+.||++|+++++
T Consensus 244 ~~tsp~~i~qki~~~~---------------D-~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~vh 307 (410)
T PRK13354 244 EKTSPYEFYQFWMNID---------------D-RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAEEITKFVH 307 (410)
T ss_pred CCCCHHHHHHHHHcCC---------------h-HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHC
Confidence 9 999999999862 1 34566666664 5788999999984 4699999999999999999
Q ss_pred hHHHHHHH
Q 015067 367 PIQVRYEE 374 (413)
Q Consensus 367 pirer~~~ 374 (413)
+.++..+.
T Consensus 308 g~~~~~~a 315 (410)
T PRK13354 308 GEEAAEEA 315 (410)
T ss_pred CHHHHHHH
Confidence 98765543
No 21
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-46 Score=354.92 Aligned_cols=261 Identities=25% Similarity=0.264 Sum_probs=207.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC--CCHHHHHHHHHHHHHHHH-Hc---CCCC
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-AC---GIDN 149 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~l-A~---GiDp 149 (413)
+.+.+|||+.|||+||+|.++++ .+..+|-++ |+|.|++|||||++++ ..++.+..++.++-..+. |. +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm-~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPM-MKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeeh-hHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 56899999999999999998885 588888777 8999999999999984 466777777765554443 33 3445
Q ss_pred CC------cchhcchhH---HHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccch
Q 015067 150 SK------SHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 220 (413)
Q Consensus 150 ~k------S~i~~~~el---~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ 220 (413)
|+ |+.....++ .+.++..++-..+++... . ..++ .++..++.++||.|||+|++++.+|.+.+|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga-e-vvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA-E-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh-h-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 55 333222121 234455554443333322 1 1122 378899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 015067 221 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 300 (413)
Q Consensus 221 ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~ 300 (413)
+..+.|||++++.++ +++|.+++++ ++|||++| .|||||+|+ |.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--cccccccCHHHHHH
Confidence 999999999999987 4578888775 99999755 799999985 99999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCccchHHHHHHhc-----------------------CCCCHHHHHHHHh--cCCcchHHH
Q 015067 301 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NMNWGTFKP 355 (413)
Q Consensus 301 KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~-----------------------~~~~~eel~~~~~--~~~~~dlK~ 355 (413)
||++||| +|+..+.|+++++++++ +++++||++++|. ++||+|||+
T Consensus 244 KI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~ 314 (360)
T KOG2144|consen 244 KIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKK 314 (360)
T ss_pred HHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHH
Confidence 9999997 56788889999988863 3458899999997 699999999
Q ss_pred HHHHHHHHhhchHHHHHHHH
Q 015067 356 LLTDALIEHLHPIQVRYEEI 375 (413)
Q Consensus 356 ~Lae~I~~~L~pirer~~~~ 375 (413)
.|..+|+++|+|||+.++..
T Consensus 315 ~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 315 GLEKALNELLQPIREEFSNW 334 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998754
No 22
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-46 Score=359.90 Aligned_cols=276 Identities=21% Similarity=0.301 Sum_probs=243.8
Q ss_pred CCceEEEecCCCC-cchhhhHHHHH-HHHHHHhhccc--EEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~i-~~~~~lQ~~~~--~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+|+++|||..||. .|||||.+++| .+| ||+.++ ++|.+.|.+.+++.. ..++..+.+++++.+++|+|+||.+
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 4799999999995 59999999997 899 999976 599999999999954 7899999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhcc-----------ccceeccccc
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSDFVPVGED 219 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~-----------~adlVpvG~D 219 (413)
+.|..+.++.---...-++-++.++.++++....+| +.+.++|.+.+|..|||..+.- -.|++|+.+|
T Consensus 162 TfIFsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiD 241 (397)
T KOG2145|consen 162 TFIFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAID 241 (397)
T ss_pred eEEEechhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeecc
Confidence 999887775411112234556779999998888888 6788999999999999999874 2699999999
Q ss_pred hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHH
Q 015067 220 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 299 (413)
Q Consensus 220 Q~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~ 299 (413)
|+|++++|||+|+|+. +++|..+++. ++|.|++.+.|||.|+| +|+|||+|++++|+
T Consensus 242 QDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdp--ns~Ifltdt~~qIk 298 (397)
T KOG2145|consen 242 QDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDP--NSAIFLTDTAKQIK 298 (397)
T ss_pred CChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCC--CceEEecCcHHHHH
Confidence 9999999999999965 7899887764 99999988899999998 49999999999999
Q ss_pred HHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHH
Q 015067 300 NKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRY 372 (413)
Q Consensus 300 ~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~--~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~ 372 (413)
+||.+ |+++++.++++++ .++|+|+.-++|+++| +++++|++..+|. +|..||+|+.+.+.|.+++..+|+++
T Consensus 299 ~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~R 378 (397)
T KOG2145|consen 299 NKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAAR 378 (397)
T ss_pred HHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999999887 4999999999999998 3457999999996 68999999999999999999999999
Q ss_pred HHHhc
Q 015067 373 EEIMS 377 (413)
Q Consensus 373 ~~~~~ 377 (413)
+++++
T Consensus 379 k~Vtd 383 (397)
T KOG2145|consen 379 KEVTD 383 (397)
T ss_pred HhccH
Confidence 98864
No 23
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.9e-41 Score=345.04 Aligned_cols=244 Identities=20% Similarity=0.247 Sum_probs=186.8
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 015067 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (413)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA~ 145 (413)
++++|+||+||| .+|||||++ +.+|.+||+. ++++++|||+||+++ |. +.+++++|+ +.++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999998 5789999998 799999999999997 43 345566666 678889999
Q ss_pred CCCCCCcchhcchh---------HHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceecc
Q 015067 146 GIDNSKSHVRAHVE---------LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 216 (413)
Q Consensus 146 GiDp~kS~i~~~~e---------l~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpv 216 (413)
|+||++..|..+++ +.|.+++.+++++|.+..+|+... . +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999854444333 344578999999999999998532 2 4689999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 015067 217 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 296 (413)
Q Consensus 217 G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe 296 (413)
|.||++|++.+|++|+++|.+.+ |.+|.+++++.....||.++| .|||.|.+-..++||+.|+|+
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~~--------------~~~t~pLl~~~dg~KmgKS~~-~~i~l~~~~~~~~i~~~d~~D 248 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSLG--------------FGLTVPLLTPADGEKMGKSGG-GAVSLDEGKYDFYQFWINTPD 248 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCCc--------------eeeceeeecCCCCCCccCCCC-CcccCCccHhhhhhhhcCCcH
Confidence 99999999999999999986533 667766665421223333222 233333321138899999999
Q ss_pred HHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhch
Q 015067 297 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 367 (413)
Q Consensus 297 ~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~p 367 (413)
++.+||++++|+.. .++++++.+ ..+-++.+.|+.||..|++.++.
T Consensus 249 ~~~~Ki~k~~t~~~------------------------~~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 249 EDVKKILKLFTFLG------------------------LEEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred HHHHHHHHHcCCCc------------------------HHHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 99999999999642 233444433 23456778888888888888875
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-36 Score=326.56 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=188.8
Q ss_pred cccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCC-C----cchhcc-hhHHHH----HhccccHHHHhh
Q 015067 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNS-K----SHVRAH-VELMWL----LSSATPIGWLNK 175 (413)
Q Consensus 109 ~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~-k----S~i~~~-~el~w~----L~~~~~i~~l~r 175 (413)
+++++|++|||||++++ ++.++|++..+++.+.|.|+|+|++ + |++... ..-||. ++..+++.|+.|
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~r 486 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSEVKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEE 486 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEchHhhhcCchhHHHHHHHHHHhccHHHHHH
Confidence 37899999999999984 6999999999999999999999986 2 666544 545786 567888888888
Q ss_pred hhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 015067 176 MIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 255 (413)
Q Consensus 176 ~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~ 255 (413)
+.. ++..++|+++||+||++||+++++|++.+|+|||..++||||++++.+
T Consensus 487 ~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~-------------------- 537 (682)
T PTZ00348 487 LYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI-------------------- 537 (682)
T ss_pred Hhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc--------------------
Confidence 652 256699999999999999999999999999999999999999998522
Q ss_pred CCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc--
Q 015067 256 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-- 333 (413)
Q Consensus 256 ~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~-- 333 (413)
.|.+++. +++|+|..|..+|++|++ +|+|||+|++++|++||++|||.+ +.+.||+++|++++
T Consensus 538 ~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp----------~~~~Npvl~~~~y~~~ 602 (682)
T PTZ00348 538 ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAP----------NEEANPVISVAQHLLA 602 (682)
T ss_pred cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCC----------CCCCCcHHHHHHHHhc
Confidence 2333443 488999888889999865 699999999999999999999853 23568999998875
Q ss_pred -----------------CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHH
Q 015067 334 -----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 373 (413)
Q Consensus 334 -----------------~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~ 373 (413)
++.+++|++++|. .+||.|||.+++++|+++|+|+|+.++
T Consensus 603 ~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 603 QQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999997 599999999999999999999999995
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-33 Score=285.27 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=183.8
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C-CCHHHHHHHHH----HHHHH-HHHcCCC
Q 015067 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAI-YLACGID 148 (413)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~-~~~~~i~~~~~----~~~a~-~lA~GiD 148 (413)
++++|+|++||| .+||||+++ +.+..+||++ |+++++|||+||+++ | +..+..+..+. ++++. ..++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 4688899998 889999999999998 5 45666666664 33333 3366766
Q ss_pred CC-CcchhcchhH-----HH----HHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceecccc
Q 015067 149 NS-KSHVRAHVEL-----MW----LLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 218 (413)
Q Consensus 149 p~-kS~i~~~~el-----~w----~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~ 218 (413)
++ +..+..++++ +| .++..++++++.+..+|+. |...+.++++.+|+||+|||+|+++++.|++.+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~--R~~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKK--RLEREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHH--HhccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 66 6555555442 22 2568899999999888884 33322479999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC-CC--H
Q 015067 219 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DP--K 295 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~-D~--p 295 (413)
|||.++.++||+++|++ +.+|.+++.| .|.++ ||. |||||.. +++++. +. |
T Consensus 189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~---~a~~~~s~~~Sp 242 (401)
T COG0162 189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEG---GAVWLDSEKTSP 242 (401)
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCC---CceEccCCCCCc
Confidence 99999999999999965 3556677765 99999 785 9999973 444443 32 6
Q ss_pred HHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC---CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhchHHHH
Q 015067 296 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVR 371 (413)
Q Consensus 296 e~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~---~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L~pirer 371 (413)
.+++++.++.- + .-+..|+..+|. +++++|.+... .-++.+.|+.||..++...++-...
T Consensus 243 ~~~yq~~~~i~-------------D---~~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a 306 (401)
T COG0162 243 YDFYQYWMNIE-------------D---ADVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAA 306 (401)
T ss_pred HhhhhcHhcCc-------------H---HHHHHHHHHhCcCChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHH
Confidence 66666655443 1 122233333332 45666666443 2266799999999999998885444
Q ss_pred HH
Q 015067 372 YE 373 (413)
Q Consensus 372 ~~ 373 (413)
++
T Consensus 307 ~~ 308 (401)
T COG0162 307 EA 308 (401)
T ss_pred HH
Confidence 43
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.7e-18 Score=172.88 Aligned_cols=249 Identities=18% Similarity=0.234 Sum_probs=171.6
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 015067 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (413)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA~ 145 (413)
|.+||.|++||.. +|+||.++.| .++.+|.. ++++-+|++..|.++ |. +.+.+++|++.+...+...
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999986 9999999854 77778887 789999999999986 32 2345556655444433322
Q ss_pred ---CC----CCCC--cchhcchhHHHH-----Hh------ccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHH
Q 015067 146 ---GI----DNSK--SHVRAHVELMWL-----LS------SATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS 204 (413)
Q Consensus 146 ---Gi----Dp~k--S~i~~~~el~w~-----L~------~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA 204 (413)
+. |+.. +.+..+ +..|+ +. ....++.|.++-+.+ .+.. .+..++.+|+|-+|||+
T Consensus 142 f~n~~~~~~~~~s~g~~~ivn-N~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~---~RLes~~GlSftEFtYQ~lQAY 217 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVN-NSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVK---SRLESPNGLSFTEFTYQLLQAY 217 (467)
T ss_pred HhcChhhhcCCcccCceeEee-chHHhhhchHHHHHHHhchhhhHHHHHHHHHHH---HhhcCCCCCcHHHHHHHHHHHH
Confidence 22 1111 222221 33463 22 234444333333333 3332 56799999999999999
Q ss_pred hhhcc----ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcccc
Q 015067 205 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 280 (413)
Q Consensus 205 DIl~~----~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSK 280 (413)
|.+++ +.+++.+|.||+.|++..-|+.+|+-..-+ .+|....++++. - +| .|..|
T Consensus 218 Dfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PLlTs-------s-tG-~KlGK 276 (467)
T KOG2623|consen 218 DFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPLLTS-------S-TG-AKLGK 276 (467)
T ss_pred hHHHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeeeEec-------C-cc-hhhcc
Confidence 99984 799999999999999999999998754211 234334444443 2 56 69999
Q ss_pred CCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHH
Q 015067 281 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 356 (413)
Q Consensus 281 S~p~~~s~I~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~ 356 (413)
|. +|+|+|+- +|..+++-.-++. +.+++-++.+++++.-+++++|.++.. +-...-..+.
T Consensus 277 Sa---GnAvWLdp~~tspy~lYQfF~~~p-------------Dd~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~ 340 (467)
T KOG2623|consen 277 SA---GNAVWLDPSKTSPYHLYQFFASLP-------------DDDVEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKL 340 (467)
T ss_pred CC---CceEEecCccCCcHHHHHHHHhCc-------------hhHHHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHH
Confidence 97 68999985 6888998766555 225566777777777777777777765 3445567889
Q ss_pred HHHHHHHhhchH
Q 015067 357 LTDALIEHLHPI 368 (413)
Q Consensus 357 Lae~I~~~L~pi 368 (413)
||+.|..+++..
T Consensus 341 LA~eVTr~VHG~ 352 (467)
T KOG2623|consen 341 LAAEVTRMVHGK 352 (467)
T ss_pred HHHHHHHHHccc
Confidence 999999999873
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.53 E-value=4e-14 Score=136.37 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=121.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEE-EEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcc-------hhcc
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNSYETL-FFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSH-------VRAH 157 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~-i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS~-------i~~~ 157 (413)
.|||.|||||+.+++.+|...+.....+ +-|.| |++ .....+....+.+++...||+++++- +...
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 5789999999999999998877764444 44777 543 23344566677888888999998732 3333
Q ss_pred hhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHHHHhhh
Q 015067 158 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 237 (413)
Q Consensus 158 ~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~ 237 (413)
++ |...|++...+.-.+. =|..+|++.++.|....++++|+.|.|+..|....+.+.+.||
T Consensus 83 S~---------------r~~~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg-- 143 (239)
T cd00808 83 SE---------------RLEIYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALG-- 143 (239)
T ss_pred eC---------------CHHHHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcC--
Confidence 22 5555555533321011 3889999999999999999999999999999999999999986
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhhh
Q 015067 238 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 304 (413)
Q Consensus 238 yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~----D~pe~I~~KI~k 304 (413)
++.|...+. +++++. +| .||||+..+ .+|.-. -+|+.|.+-+..
T Consensus 144 ----------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 144 ----------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred ----------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 456655544 377776 56 699999742 222211 257777766654
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.42 E-value=1.1e-12 Score=116.13 Aligned_cols=63 Identities=44% Similarity=0.513 Sum_probs=53.9
Q ss_pred hhHHHHHhhhcccc---ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 015067 198 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 274 (413)
Q Consensus 198 YPvLQAADIl~~~a---dlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg 274 (413)
||+.|+||++.+.. |++++|.||.+|+++.++++++++ + ...|..+..+ +|++. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 999999999999999999999986 1 2357777664 78776 55
Q ss_pred CCccccCC
Q 015067 275 LSKMSKSA 282 (413)
Q Consensus 275 ~~KMSKS~ 282 (413)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.72 E-value=1.4e-07 Score=90.71 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=107.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcchhcchhHHHHH
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSHVRAHVELMWLL 164 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS~i~~~~el~w~L 164 (413)
.|||.|||||...++.+|..-+.. +.+++=|=| . ++ .....+....+..++..+||+.+.. +...++
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieD-t---D~--~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~----- 76 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIED-T---DP--ERSRPEYVESILEDLKWLGLDWDEG-PYRQSD----- 76 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCc-C---CC--CCCChHHHHHHHHHHHHcCCCCCCC-eeehhc-----
Confidence 578999999999999999754443 344444333 2 11 1233346667888888899998752 111111
Q ss_pred hccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCcccc
Q 015067 165 SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 244 (413)
Q Consensus 165 ~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~ 244 (413)
++.+..++-++-...| |..+|=+--+.|=...+.++|.-|.|+..+-..-+.|.+.++
T Consensus 77 -------r~~~y~~~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--------- 134 (230)
T cd00418 77 -------RFDLYRAYAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--------- 134 (230)
T ss_pred -------CHHHHHHHHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---------
Confidence 1111111111111111 666676666677777899999999999999999999999876
Q ss_pred ccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhh
Q 015067 245 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 303 (413)
Q Consensus 245 ~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~----D~pe~I~~KI~ 303 (413)
++.|...+.+ +|.+. +| +||||++.+ .+|.-. -+|+.|.+-+.
T Consensus 135 ---------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 135 ---------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred ---------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 5678777764 77776 56 699999753 223211 25666666654
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.52 E-value=6.1e-06 Score=88.04 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=49.3
Q ss_pred cccceeccccchHH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCC
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 286 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~-r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~ 286 (413)
+++|+.|.|.||.. +..++++|++ .|+ .+.|..+... .|..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC---C
Confidence 47999999999999 9999999999 644 3557665543 55543 45 7999997 6
Q ss_pred ceeecCC-----CHHHHH
Q 015067 287 SRINLLD-----PKDVIA 299 (413)
Q Consensus 287 s~I~L~D-----~pe~I~ 299 (413)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 8888766 566665
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.49 E-value=1.2e-06 Score=89.34 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=50.1
Q ss_pred CceEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE-EEEEeccee------------------ec--C-C----CC
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET-LFFIVDLHA------------------IT--L-P----YD 127 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~-~i~IaDlhA------------------~t--~-~----~~ 127 (413)
+..|=||+-|||.+||||+...+ .-+.+.++. +++ +++.+|.|- .. . | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 46777999999999999987654 224444443 565 678899992 11 1 0 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 128 TQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 128 ~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
++-..++.......+-.+||+.+-
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d~ 123 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVEF 123 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeee
Confidence 344666667777888889998764
No 32
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.20 E-value=6.9e-06 Score=69.10 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=43.4
Q ss_pred EEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHH
Q 015067 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140 (413)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a 140 (413)
+++|-.| |.+|+||+.+ ++.+.++++ .+++.++|.|+.+.+.+...++++.....+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 5677788 8999999988 688888773 589999999998865566666666555544
No 33
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.87 E-value=0.00056 Score=72.28 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=46.8
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEEe-cceee--cC-----CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFIV-DLHAI--TL-----PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~Ia-DlhA~--t~-----~~~~-~~i~~~~~~~~a~~l 143 (413)
..++| +|--|.|.+||||..+.+ .-+.++++. ++|++... |.|.- +. ..++ +..+.++..+.+++.
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45666 899999999999976654 234444443 67776654 33311 11 1244 344566778888999
Q ss_pred HcCC-CCCC
Q 015067 144 ACGI-DNSK 151 (413)
Q Consensus 144 A~Gi-Dp~k 151 (413)
++|+ .|+.
T Consensus 103 ~Lgi~~~d~ 111 (463)
T PRK00260 103 ALNVLPPDI 111 (463)
T ss_pred HcCCCCCCc
Confidence 9999 5553
No 34
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.85 E-value=4.9e-05 Score=75.93 Aligned_cols=169 Identities=19% Similarity=0.229 Sum_probs=100.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC-----cchhc-ch
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-----SHVRA-HV 158 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k-----S~i~~-~~ 158 (413)
.|||.|||||+..++.+|..-+.. ++.++=|-|. ++ .....+....+..++..+||+.+. |+-.. +.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~ 86 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDGPVLYQSQRHDAYR 86 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCCCceEeeccHHHHH
Confidence 466999999999999999766554 5666666663 22 233445677888899999999985 32111 11
Q ss_pred h-------HHHHHhccccHHHHhhhhh--------HHHhHHhhCC-CC---------------------------c--cc
Q 015067 159 E-------LMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN---------------------------V--GV 193 (413)
Q Consensus 159 e-------l~w~L~~~~~i~~l~r~~~--------~k~~~~~~~~-~~---------------------------~--~~ 193 (413)
+ ..+.+.|.++-.++++.-+ |--.-+.... +. . .+
T Consensus 87 ~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~ 166 (299)
T PRK05710 87 AALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALAV 166 (299)
T ss_pred HHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCCC
Confidence 1 1133668888888764431 1000000000 00 0 00
Q ss_pred ---------hhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCC
Q 015067 194 ---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPA 264 (413)
Q Consensus 194 ---------g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~ 264 (413)
|..+|=+-=+.|=...+.++|.=|.|....-..-.-|.+.|+ ++.|+..+.+
T Consensus 167 ~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p- 227 (299)
T PRK05710 167 GDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP- 227 (299)
T ss_pred CCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee-
Confidence 222222222222233468899999998776666666666654 6778877764
Q ss_pred CcccccCCCCCCccccCCC
Q 015067 265 GARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 265 ~~~i~sL~dg~~KMSKS~p 283 (413)
.|.+. +| +||||++.
T Consensus 228 --ll~~~-~g-~kLSKr~~ 242 (299)
T PRK05710 228 --LVLNA-DG-QKLSKQNG 242 (299)
T ss_pred --cccCC-CC-CcccccCC
Confidence 77776 66 69999963
No 35
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.78 E-value=0.00064 Score=72.46 Aligned_cols=192 Identities=17% Similarity=0.161 Sum_probs=111.1
Q ss_pred eEEEecCCC--CcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC-----
Q 015067 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK----- 151 (413)
Q Consensus 80 ~i~tGi~PT--G~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k----- 151 (413)
.|.+.|.|| |.+||||...++.+|.--+.. +.+++=|-|. +. .....+....+..++..+|||++.
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT----D~--~R~~~~~~~~i~~~L~WLGl~wDe~py~Q 77 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT----DK--ERSTKEAVEAIFSGLKWLGLDWNGEVIFQ 77 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----Cc--cccChHHHHHHHHHHHHcCCCCCCCceeE
Confidence 466778777 999999999999999754443 4455555443 11 122234556677788889999873
Q ss_pred cc-hhcchhHH-------HHHhccccHHHHhhhhh----------HHHhHHhh-------C---------CCC--c----
Q 015067 152 SH-VRAHVELM-------WLLSSATPIGWLNKMIQ----------FKEKSHKA-------G---------GEN--V---- 191 (413)
Q Consensus 152 S~-i~~~~el~-------w~L~~~~~i~~l~r~~~----------~k~~~~~~-------~---------~~~--~---- 191 (413)
|+ +..+.++. ..+-|.++-.+|+.+-. |....+.. + .+. +
T Consensus 78 SeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D 157 (513)
T PRK14895 78 SKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHD 157 (513)
T ss_pred eCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEe
Confidence 22 21122211 12457888777654321 10000000 0 000 0
Q ss_pred -cchhhhh-------hHHH---------HH---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 015067 192 -GVALLTY-------PVLM---------AS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 251 (413)
Q Consensus 192 -~~g~l~Y-------PvLQ---------AA---DIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~ 251 (413)
-.|.+.+ +|++ .| |=...+.++|..|.||..|.-.-..+.+.++
T Consensus 158 ~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG---------------- 221 (513)
T PRK14895 158 TLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG---------------- 221 (513)
T ss_pred ecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC----------------
Confidence 0011111 2222 11 1122378999999999999988888877754
Q ss_pred ccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 252 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 252 ~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
+..|...+.+ .|.++ +| +||||.+. ...+.+ .|+.|.+-+..
T Consensus 222 --~~~p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 --YAVPSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred --CCCCeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 4567776664 78887 56 69999974 334432 57778777754
No 36
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.77 E-value=0.001 Score=70.64 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=56.9
Q ss_pred hhHHHHHhhhc---cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 015067 198 YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 274 (413)
Q Consensus 198 YPvLQAADIl~---~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg 274 (413)
+|..+.||++- .+.|+|..|.||..|.-.-..+.+.++ +..|...+.+ .+.++ +|
T Consensus 192 ~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------------~~~p~~~H~p---li~~~-~g 249 (476)
T PRK01406 192 TPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------------WEVPVFAHLP---LILGP-DG 249 (476)
T ss_pred CccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------------CCCCeEEEee---eeeCC-CC
Confidence 56666666643 478999999999999988888888765 4557766654 67776 56
Q ss_pred CCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 275 LSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 275 ~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
+||||.+ +.+.+.| .|+.|.+-+..
T Consensus 250 -~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 250 -KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred -CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 6999997 3555543 56666666543
No 37
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.75 E-value=0.0024 Score=67.76 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=50.5
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
.+.|+|..|.||..|...-..+.+.++ +..|...+.+ .+.++ +| +||||.+ +.
T Consensus 196 ~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~~~p~~~H~p---~l~~~-~g-~kLSKR~----g~ 248 (470)
T TIGR00464 196 MKITHVIRGEDHISNTPKQILIYQALG------------------WKIPVFAHLP---MILDE-DG-KKLSKRD----GA 248 (470)
T ss_pred CCCCEEEECchhhcCHHHHHHHHHHcC------------------CCCCeEEEEe---eeecC-CC-ccccccC----CC
Confidence 379999999999999988888888764 4567666654 56666 56 6999996 35
Q ss_pred eecCC------CHHHHHHHhhh
Q 015067 289 INLLD------PKDVIANKIKR 304 (413)
Q Consensus 289 I~L~D------~pe~I~~KI~k 304 (413)
+.|.| .|+.+.+-+..
T Consensus 249 ~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 249 TSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred ccHHHHHHCCCCHHHHHHHHHH
Confidence 55543 57777776644
No 38
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.70 E-value=0.00018 Score=76.89 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=32.0
Q ss_pred CceEEEecCCCCcchhhhHHHHHH--HHHHHhhc--ccE-EEEEecce
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQNS--YET-LFFIVDLH 120 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~--~~~~lQ~~--~~~-~i~IaDlh 120 (413)
+..|=||+-|||.+||||+...+. -|.+..+. .++ +|+.+|.|
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~ 66 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNY 66 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 578889999999999999887652 24343332 454 78889999
No 39
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.43 E-value=0.00058 Score=68.18 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=38.3
Q ss_pred CCCcchhhhHHHHH-----HHHHHHhhcccE-EEEEecceeecCC-------C-------------C-HHHHHHHHHHHH
Q 015067 87 PTGSIHLGNYLGAI-----KNWIALQNSYET-LFFIVDLHAITLP-------Y-------------D-TQQLSKATRETA 139 (413)
Q Consensus 87 PTG~lHLGnylg~i-----~~~~~lQ~~~~~-~i~IaDlhA~t~~-------~-------------~-~~~i~~~~~~~~ 139 (413)
|+|.+||||+.+.+ ..+.+++ .++| +++-.|.|.+-.. . . .+-.+++...+.
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHK 89 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 56999999988743 3343332 3565 4555788765310 1 1 133344556777
Q ss_pred HHHHHcCCCCC
Q 015067 140 AIYLACGIDNS 150 (413)
Q Consensus 140 a~~lA~GiDp~ 150 (413)
+++.+.|+..+
T Consensus 90 ~~l~~lgI~~D 100 (312)
T cd00668 90 EDFRRLGISYD 100 (312)
T ss_pred HHHHHhCcccc
Confidence 78889999765
No 40
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.38 E-value=0.0014 Score=62.55 Aligned_cols=71 Identities=11% Similarity=-0.019 Sum_probs=43.6
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeec--C-----CCCH-HHHHHHHHHHHHHHHHc
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAIT--L-----PYDT-QQLSKATRETAAIYLAC 145 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t--~-----~~~~-~~i~~~~~~~~a~~lA~ 145 (413)
....+|-=|-|.+||||....+ .-+.++++. ++|++.. .|.|..= . ..+| +-.+.++..+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3445788888999999965543 223333333 5666554 4445321 0 1244 45566677888888889
Q ss_pred CCCC
Q 015067 146 GIDN 149 (413)
Q Consensus 146 GiDp 149 (413)
||.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9886
No 41
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.24 E-value=0.0092 Score=62.88 Aligned_cols=186 Identities=20% Similarity=0.192 Sum_probs=102.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC----cchhcc-hh
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK----SHVRAH-VE 159 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k----S~i~~~-~e 159 (413)
.|||.+||||...++.+|.--... +++++=|=| +-. ..........+..++..+|++.+. |+.... .+
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIED-TD~-----~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~ 83 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDD-TDL-----ERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRYDE 83 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecc-CCc-----ccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHHHH
Confidence 477999999999999999754443 344444433 211 123345566777788889999875 332211 11
Q ss_pred HH-------HHHhccccHHHHhhhhh----------HH---------HhHHhh--C----------CCC-----ccchhh
Q 015067 160 LM-------WLLSSATPIGWLNKMIQ----------FK---------EKSHKA--G----------GEN-----VGVALL 196 (413)
Q Consensus 160 l~-------w~L~~~~~i~~l~r~~~----------~k---------~~~~~~--~----------~~~-----~~~g~l 196 (413)
.. ..+.|.++-.+|+.+-. |. +..+.. + +.. .--|.+
T Consensus 84 ~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~ 163 (445)
T PRK12558 84 AAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQ 163 (445)
T ss_pred HHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEe
Confidence 10 12457887777653321 10 000000 0 000 001222
Q ss_pred hhhHHHHHhhhc-------------------cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC
Q 015067 197 TYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP 257 (413)
Q Consensus 197 ~YPvLQAADIl~-------------------~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P 257 (413)
.++.-.--|.++ .+.++|.-|+|...+--.-.-|.+.|+ ++.|
T Consensus 164 ~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~~~P 225 (445)
T PRK12558 164 SIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------AKPP 225 (445)
T ss_pred ecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------CCCC
Confidence 222211123222 258899999988776554444545443 6678
Q ss_pred ccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 258 EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 258 ~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
+..+.+ +|.+- || +|+||.+. ...+.+ .|+.|.+-+..
T Consensus 226 ~f~H~p---li~~~-~g-~KLSKR~g----~~sv~~~r~~G~~Peai~n~la~ 269 (445)
T PRK12558 226 VFAHLS---LLTGA-DG-KGLSKRLG----GLSIRSLREDGIEPMAIASLLAR 269 (445)
T ss_pred eEEEcc---cccCC-Cc-ccccccCC----CcCHHHHHHCCCCHHHHHHHHHH
Confidence 877765 77775 66 79999974 333332 68888887765
No 42
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.15 E-value=0.0025 Score=61.93 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=87.3
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhccc--EEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcchhcchh-
Q 015067 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSHVRAHVE- 159 (413)
Q Consensus 83 tGi~PTG~lHLGnylg~i~~~~~lQ~~~~--~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS~i~~~~e- 159 (413)
.|-.|||.+||||...++.+|+--+ .++ +++=|-|. ++............+.+++..+|++++. ++..++
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-~~~G~~ilRieDt----D~~r~~~~~~~~~~i~~dL~wLGl~~d~--~~~qS~r 78 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-MYGGKFILRFDDT----DPRTKRPDPEAYDMIPEDLEWLGVKWDE--VVIASDR 78 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-HcCCEEEEeeCcC----CCCcccchHHHHHHHHHHHHHcCCCCCC--ccchhcc
Confidence 4567889999999999998886443 343 33333333 1111013444555688889999999875 222111
Q ss_pred --HHH-HHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHH---hhhccccceeccccchHHHHHHHHHHHHH
Q 015067 160 --LMW-LLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAER 233 (413)
Q Consensus 160 --l~w-~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIl~~~adlVpvG~DQ~~hleLaRdiA~r 233 (413)
.+. .+..+. .+-..|. ....+ + . ..+||..+=| |=...+.++|.-|.|-..+-..-.-|.+.
T Consensus 79 ~~~y~~~~~~Li-----~~G~aY~--~~~~~-~-~---~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~ 146 (240)
T cd09287 79 IELYYEYARKLI-----EMGGAYV--HPRTG-S-K---YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEY 146 (240)
T ss_pred HHHHHHHHHHHH-----HcCCccc--CcccC-C-c---EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHH
Confidence 110 000000 0001111 00111 1 1 1234444433 33446899999999998877766666666
Q ss_pred HhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCC
Q 015067 234 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 282 (413)
Q Consensus 234 ~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~ 282 (413)
++ ++.|...+.+ +|.. +| +||||.+
T Consensus 147 Lg------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 147 FG------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred cC------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 54 5667776654 6643 45 7999997
No 43
>PLN02627 glutamyl-tRNA synthetase
Probab=97.15 E-value=0.035 Score=59.64 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=41.5
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
++=-.=.|||.+||||...++.+|.--+.. +++++=|=| +--. ....+....+..++.-+||+.+.
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIED-TD~~-----R~~~e~~~~I~~~L~WLGl~wDe 113 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-TDLA-----RSTKESEEAVLRDLKWLGLDWDE 113 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCc-CCCC-----CCChHHHHHHHHHHHHcCCCCCc
Confidence 333334567999999999999999755443 344443333 2111 22234555677777788999875
No 44
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.06 E-value=0.0039 Score=59.04 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=74.0
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceee-cCC-----CCHHHH-HHHHHHHHHHHHHcCCCC
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI-TLP-----YDTQQL-SKATRETAAIYLACGIDN 149 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~-t~~-----~~~~~i-~~~~~~~~a~~lA~GiDp 149 (413)
|++--|+|.+||||..+.+ .-+.++.+. ++|+ ....|.|.. +.. ..|.++ .........+|.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5677789999999987654 223333333 6664 333444422 100 123333 334457777888999877
Q ss_pred CC----cch-hcchhHH-HHHhc-cc--cHHHH-hhhhhHHHhHHhhCCCCc---cchhhhhhH---HHHHhhhccccce
Q 015067 150 SK----SHV-RAHVELM-WLLSS-AT--PIGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDILLYQSDF 213 (413)
Q Consensus 150 ~k----S~i-~~~~el~-w~L~~-~~--~i~~l-~r~~~~k~~~~~~~~~~~---~~g~l~YPv---LQAADIl~~~adl 213 (413)
+. |+. ....+.. .+... .. .-+.+ -....|++ .. +-+ +=|..+|.. -.+.|=+.+++|.
T Consensus 86 d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~----~~-d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~ 160 (212)
T cd00671 86 DVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD----DK-DRVLVRSDGTYTYFTRDIAYHLDKFERGADK 160 (212)
T ss_pred ceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC----CC-CeEEEECCCCccchHHHHHHHHHHHhcCCCE
Confidence 54 322 1111100 01000 00 00000 00000100 00 000 226666652 1222222257888
Q ss_pred e--ccccchHHHHHHHHHHHHHHh
Q 015067 214 V--PVGEDQKQHLELTRELAERVN 235 (413)
Q Consensus 214 V--pvG~DQ~~hleLaRdiA~r~n 235 (413)
+ .+|.||..|+.--+.+++.++
T Consensus 161 ~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 161 IIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred EEEEECCCHHHHHHHHHHHHHHcC
Confidence 8 999999999999999999876
No 45
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=96.98 E-value=0.00088 Score=71.55 Aligned_cols=183 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE--EEEecceeecCC------CCHHHH-HHHHHHHHHHHHHcCCC
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDLHAITLP------YDTQQL-SKATRETAAIYLACGID 148 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~--i~IaDlhA~t~~------~~~~~i-~~~~~~~~a~~lA~GiD 148 (413)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|+ ..+.||-.-+.. ..|+.+ ......+..+|..+|+.
T Consensus 117 ~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~ 196 (507)
T PRK01611 117 YVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGVH 196 (507)
T ss_pred ecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 5788999999999988765 224444443 5653 334555322210 123333 34455778888899998
Q ss_pred CCC----cchhcchhHHHHHhccccHHHHh----hhhhHHHhHHhhCCC-Cc----cchhhhhhHHHHHhhhcc------
Q 015067 149 NSK----SHVRAHVELMWLLSSATPIGWLN----KMIQFKEKSHKAGGE-NV----GVALLTYPVLMASDILLY------ 209 (413)
Q Consensus 149 p~k----S~i~~~~el~w~L~~~~~i~~l~----r~~~~k~~~~~~~~~-~~----~~g~l~YPvLQAADIl~~------ 209 (413)
++. |+........+++..+..-|-+. ...-|. ...++++ .. +=|..+|. +.||-+.
T Consensus 197 ~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~~~~k~~~ 271 (507)
T PRK01611 197 FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEFGDDKDRVLIKSDGTYTYF---TRDIAYHLYKFER 271 (507)
T ss_pred eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhhCCCCCeEEEECCCCccch---HHHHHHHHHHHhh
Confidence 753 22221112222221111100000 000000 0011100 00 22555663 3355432
Q ss_pred -ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--c-cccCCCCcccccCCCCCCccccCCCCC
Q 015067 210 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSKMSKSAPSD 285 (413)
Q Consensus 210 -~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P--~-~l~~~~~~~i~sL~dg~~KMSKS~p~~ 285 (413)
+--+-.+|.||..|+.-...+++.++. ..+ . .++... .++ ...+| +|||||.
T Consensus 272 ~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv-~~~~g-~KMSkR~--- 327 (507)
T PRK01611 272 FDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLV-RGGEG-VKMSTRA--- 327 (507)
T ss_pred cCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-Eee-ECCCC-CcccCCC---
Confidence 234449999999999999999888652 111 1 112111 122 22345 6999997
Q ss_pred CceeecCC
Q 015067 286 QSRINLLD 293 (413)
Q Consensus 286 ~s~I~L~D 293 (413)
++.|.+.|
T Consensus 328 Gn~i~l~d 335 (507)
T PRK01611 328 GNVVTLDD 335 (507)
T ss_pred CceeEHHH
Confidence 68998866
No 46
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.96 E-value=0.0036 Score=62.83 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCcchhhhHHHHH--HHHHHHhh--cccEE-EEEecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 015067 87 PTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~--~~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
|+|.+||||..+.+ .-+.++++ .++|. ++-.|.|..-. ..++ +-.+++.....+++.+.|+.++
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 57999999987754 22333333 35664 44466664321 1244 3445666788888999999765
No 47
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.88 E-value=0.0036 Score=60.66 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=81.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcchhcch---hHH
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSHVRAHV---ELM 161 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS~i~~~~---el~ 161 (413)
.|||.|||||...++.+|..-... +..++=|=| . + ......+....+..++..+|++.+. +...+ +.+
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieD-t---D--~~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDD-T---N--PEKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC-C---C--CcccchHHHHHHHHHHHHcCCCCCC--ceecccCHHHH
Confidence 478999999999999999654332 333333322 1 1 1133445666788888899999874 21111 111
Q ss_pred H-HHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHH---HhhhccccceeccccchHHHHHHHHHHHHHHhhh
Q 015067 162 W-LLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 237 (413)
Q Consensus 162 w-~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQA---ADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~ 237 (413)
. .+..+.. +-..|.. .+.+ . ...+||..+= .|=...+.++|.-|.|....-..-.-+.+.++
T Consensus 81 ~~~~~~L~~-----~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg-- 146 (238)
T cd00807 81 YEYAEQLIK-----KGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALR-- 146 (238)
T ss_pred HHHHHHHHH-----cCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcC--
Confidence 1 0000000 0000110 0000 1 1123444443 34345689999999998776655555655543
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015067 238 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 238 yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
++.|..+... .+ +. +| .|+||++.
T Consensus 147 ----------------~~~P~~~~~~---hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 147 ----------------LYRPHQWEFS---RL-NL-TY-TVMSKRKL 170 (238)
T ss_pred ----------------CCCCceeEEE---EE-CC-CC-CCccCcCc
Confidence 5567433221 22 44 56 69999973
No 48
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0043 Score=65.61 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHH---HHHHhhc-ccE-EEEEecceeec
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQNS-YET-LFFIVDLHAIT 123 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~---~~~lQ~~-~~~-~i~IaDlhA~t 123 (413)
...++=||+.|||.+||||+-=.+.- ...|-+. +++ +|+++|.+-=+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~l 70 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPL 70 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCccc
Confidence 45688899999999999997533311 1223333 444 78888887655
No 49
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.74 E-value=0.019 Score=56.81 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC-----cc-hhcch
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-----SH-VRAHV 158 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k-----S~-i~~~~ 158 (413)
.|||.|||||...++.+|.--+.. +.+++=|=|. ++. ....+....+..++.-+||+.++ |+ +..+.
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt----D~~--R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~ 81 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL----DPP--REVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQ 81 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC----CCC--CCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHH
Confidence 478999999999999999754443 3444444332 111 22234556677777788999885 22 11111
Q ss_pred hHH-------HHHhccccHHHHhhhh-----hHHHhHHh-----hC----------CCCc-----cchhhh---------
Q 015067 159 ELM-------WLLSSATPIGWLNKMI-----QFKEKSHK-----AG----------GENV-----GVALLT--------- 197 (413)
Q Consensus 159 el~-------w~L~~~~~i~~l~r~~-----~~k~~~~~-----~~----------~~~~-----~~g~l~--------- 197 (413)
+.. ..+-|.++-.++++.. .|...-+. .+ ...+ -.|.+.
T Consensus 82 ~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D 161 (272)
T TIGR03838 82 AALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGD 161 (272)
T ss_pred HHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCC
Confidence 111 1145888877775441 11100000 00 0000 011111
Q ss_pred --------hhHHHHH---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCc
Q 015067 198 --------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGA 266 (413)
Q Consensus 198 --------YPvLQAA---DIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~ 266 (413)
||..+=| |=...+.++|.=|+|....--.-.-|.+.|+ ++.|...+.+
T Consensus 162 ~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~p--- 220 (272)
T TIGR03838 162 FVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLP--- 220 (272)
T ss_pred EEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEech---
Confidence 2222221 1122368999999998876666556666543 6678776664
Q ss_pred ccccCCCCCCccccCCC
Q 015067 267 RVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 267 ~i~sL~dg~~KMSKS~p 283 (413)
.|.+. +| +|+||++.
T Consensus 221 ll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 221 LVVNA-DG-EKLSKQNG 235 (272)
T ss_pred hhhCC-CC-CeeeccCC
Confidence 78886 67 69999974
No 50
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.71 E-value=0.044 Score=57.64 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=39.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|||.+||||...++.+|.--+.. +++++=|=| +--. ....+....+..++.-+||+.+.
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiED-TD~~-----R~~~e~~~~I~~~L~WlGl~wDe 67 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIED-TDKE-----RNIEGKDKEILEILNLFGISWDK 67 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-CCCC-----cCChHHHHHHHHHHHHcCCCCCC
Confidence 488999999999999999754443 344443333 2111 22234556777777788999886
No 51
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.012 Score=62.37 Aligned_cols=174 Identities=21% Similarity=0.204 Sum_probs=98.1
Q ss_pred EEEecCC--CCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 015067 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKS----- 152 (413)
Q Consensus 81 i~tGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS----- 152 (413)
|.+=|.| ||.+||||...++.+|.--+.. +++++=|=| |++. ....+....+..++.-+||+++..
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiED----TD~~--R~~~e~~~~I~~~L~WLGl~wde~~~~QS 83 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIED----TDPE--RETPEAEDAILEDLEWLGLDWDEGPYYQS 83 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecC----CCCC--CCCHHHHHHHHHHHHhcCCCCCCceeehh
Confidence 5555655 5999999999999999644433 445544444 2221 222335556667777899999873
Q ss_pred c-hhcchhH-HHH------HhccccHHHHhhhh-----------hHH---------HhHHhhCC----------C--Cc-
Q 015067 153 H-VRAHVEL-MWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E--NV- 191 (413)
Q Consensus 153 ~-i~~~~el-~w~------L~~~~~i~~l~r~~-----------~~k---------~~~~~~~~----------~--~~- 191 (413)
+ +....++ .++ +-|.++-.+|+.+- .|- ++....+. . ..
T Consensus 84 ~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~~ 163 (472)
T COG0008 84 ERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHPG 163 (472)
T ss_pred hhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCCC
Confidence 2 1111111 122 34777776555441 111 00000000 0 00
Q ss_pred ------cchhhhhh------HHHHHhhhc------------cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccC
Q 015067 192 ------GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 247 (413)
Q Consensus 192 ------~~g~l~YP------vLQAADIl~------------~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g 247 (413)
-.|.+..+ +++-+|++. .+.++|.-|.|+..+-..-+-|-+-|+
T Consensus 164 ~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg------------ 231 (472)
T COG0008 164 PVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG------------ 231 (472)
T ss_pred CccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC------------
Confidence 11233333 333444433 268999999998877766666655543
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015067 248 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 248 ~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 ------~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 ------WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred ------CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 6678877765 7777 455 79999974
No 52
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.32 E-value=0.029 Score=60.76 Aligned_cols=176 Identities=17% Similarity=0.132 Sum_probs=97.4
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC----cc
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK----SH 153 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k----S~ 153 (413)
.+...+=.|||.+||||...++.+|.--+.. +.+++=|-|. ++.-.....+....+..++..+|++++. |+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSd 177 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSD 177 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCCCccCccc
Confidence 4556677777999999999999888643322 3344444443 2211122334556777888889999876 22
Q ss_pred -hhcchhHH-------HHHhccccHHHHhhhhh------HH-----HhHH-----------------hhC-C---CCcc-
Q 015067 154 -VRAHVELM-------WLLSSATPIGWLNKMIQ------FK-----EKSH-----------------KAG-G---ENVG- 192 (413)
Q Consensus 154 -i~~~~el~-------w~L~~~~~i~~l~r~~~------~k-----~~~~-----------------~~~-~---~~~~- 192 (413)
+....++. ..+.|.++-.++++... +. +... +.. + .+.+
T Consensus 178 r~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~ 257 (567)
T PRK04156 178 RLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSV 257 (567)
T ss_pred CHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCc
Confidence 21121211 11346665554432210 00 0000 000 0 0000
Q ss_pred -----------------chhhhhhHHHHH---hhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 015067 193 -----------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 252 (413)
Q Consensus 193 -----------------~g~l~YPvLQAA---DIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~ 252 (413)
-+-.+||.++=| |..+.+.|+|.-|.|...+-..-..+.+.|+
T Consensus 258 rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg----------------- 320 (567)
T PRK04156 258 RDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG----------------- 320 (567)
T ss_pred cccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC-----------------
Confidence 011235655433 3344579999999999888877777766654
Q ss_pred cccCCccccCCCCcccccCCCCCCccccCC
Q 015067 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSA 282 (413)
Q Consensus 253 ~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~ 282 (413)
+..|...+.+ +|. + +| .|||||.
T Consensus 321 -~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 -WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred -CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 4568777664 664 4 56 5999996
No 53
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.28 E-value=0.018 Score=61.69 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|.+=|. |||.|||||.-.++.+|.--+...-.+++=-|. |++ .....+....+..++.-+|++++.
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiED---TDp--~R~~~e~~~~I~~dL~WLGl~wD~ 79 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDD---TNP--SKEKAEFEESIIEDLGKIEIKPDS 79 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECC---CCC--CccchHHHHHHHHHHHHhCCCCCC
Confidence 3455554 569999999999999996443332233333333 222 134445667778888888999876
No 54
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.18 E-value=0.037 Score=58.67 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=43.7
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceee--cC-----CCCH-HHHHHHHHHHHHHHHHcC
Q 015067 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAI--TL-----PYDT-QQLSKATRETAAIYLACG 146 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~--t~-----~~~~-~~i~~~~~~~~a~~lA~G 146 (413)
...+|.-|-|.+||||..+.+ .-+.++++. ++|.+.. .|.|.- .. ..+| +..+.++..+..++.++|
T Consensus 24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~Lg 103 (465)
T TIGR00435 24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALN 103 (465)
T ss_pred EEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 445888888999999976654 223343333 6775554 355522 11 1244 344556678888899999
Q ss_pred CCCC
Q 015067 147 IDNS 150 (413)
Q Consensus 147 iDp~ 150 (413)
+.++
T Consensus 104 I~~d 107 (465)
T TIGR00435 104 VLPP 107 (465)
T ss_pred CCCC
Confidence 9743
No 55
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=95.77 E-value=0.11 Score=56.63 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=43.8
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|.+=|- |||.|||||...++.+|.--+...-.+++==|. |++. ....+....+..++..+||+++.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiED---TDp~--R~~~e~~d~IleDL~WLGl~wDe 120 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDD---TNPS--KEKEHFEQAILDDLATLGVSWDV 120 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcC---CCCc--ccCHHHHHHHHHHHHHCCCCCCC
Confidence 4555555 559999999999999996544432233333332 2221 34445677888888899999874
No 56
>PLN02859 glutamine-tRNA ligase
Probab=95.39 E-value=0.056 Score=60.38 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|.+=| .|||.|||||.-.++.+|.--+...-.+++=-|.. ++. ....+....+..++.-+|+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT---dp~--r~~~e~~~~I~edL~WLG~~~d~ 332 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT---NPE--AEKKEYIDHIEEIVEWMGWEPFK 332 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC---CCC--ccchHHHHHHHHHHHHcCCCCCC
Confidence 44444 46699999999999989864433322333433332 222 23344566677777788999876
No 57
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.045 Score=57.00 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=72.1
Q ss_pred ccCC-CCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHH-------
Q 015067 260 LIPP-AGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ------- 331 (413)
Q Consensus 260 l~~~-~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~------- 331 (413)
+++. .|.+ ||=+.|+.|||+|++ .|.|.+.|.+..|..|++.+||.....+. .+++.++.+
T Consensus 216 LL~~ldG~K-mgKs~~~a~~~~s~~--~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~--------~~eI~~i~~~~~~~~~ 284 (401)
T COG0162 216 LLTGLDGKK-MGKSEGGAVWLDSEK--TSPYDFYQYWMNIEDADVKRFLKLLTFLS--------LEEIEEIEKYVLKGPE 284 (401)
T ss_pred cccCCCCCc-ccccCCCceEccCCC--CCcHhhhhcHhcCcHHHHHHHHHHhCcCC--------hHHHHHHHHHhhcCCC
Confidence 4544 3443 443345479999997 48999999999999999999986553221 122222222
Q ss_pred --------------hcCC-----CCHHHHHHHHh-----cCCcchHHH-----HHHHHHHHhhchHHHHHHHHhc
Q 015067 332 --------------LISG-----KTKGEVAEECQ-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIMS 377 (413)
Q Consensus 332 --------------~~~~-----~~~eel~~~~~-----~~~~~dlK~-----~Lae~I~~~L~pirer~~~~~~ 377 (413)
.+-| +.+++.+..|. ++++.|||. .++..+...|.|.|....+..+
T Consensus 285 ~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~ 359 (401)
T COG0162 285 PREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQ 359 (401)
T ss_pred hHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhcc
Confidence 1222 24456666675 478899999 8888888889999887776543
No 58
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=94.29 E-value=2.3 Score=47.32 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=43.3
Q ss_pred CCceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecce--eecC-----CCCH-HHHHHHHHHHHHHH
Q 015067 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLH--AITL-----PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlh--A~t~-----~~~~-~~i~~~~~~~~a~~ 142 (413)
...++| +|.-+=+.+||||....+ .-+.++++. ++|+++. .|.| .++. ..++ +..+.++.....++
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~ 326 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDA 326 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 454444889999977654 224444333 6776554 3333 1221 1244 44456677888889
Q ss_pred HHcCCCCCC
Q 015067 143 LACGIDNSK 151 (413)
Q Consensus 143 lA~GiDp~k 151 (413)
.++|+.+..
T Consensus 327 ~~LnI~~p~ 335 (699)
T PRK14535 327 DALGVLRPD 335 (699)
T ss_pred HHcCCCCCc
Confidence 999987543
No 59
>PLN02946 cysteine-tRNA ligase
Probab=93.90 E-value=0.34 Score=52.56 Aligned_cols=72 Identities=14% Similarity=0.000 Sum_probs=41.9
Q ss_pred CCceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eccee--ecC-----CCCH-HHHHHHHHHHHHHH
Q 015067 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~ 142 (413)
..+++| +|.-+-|.+||||....+ .-+.++++. ++|++.. .|.|. ++. +.++ +..++++.....++
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 454444899999977654 223343333 6765443 33331 221 1255 45566777888899
Q ss_pred HHcCCC
Q 015067 143 LACGID 148 (413)
Q Consensus 143 lA~GiD 148 (413)
.++|+.
T Consensus 159 ~~LnI~ 164 (557)
T PLN02946 159 AYLHCL 164 (557)
T ss_pred HHCCCC
Confidence 999985
No 60
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=93.18 E-value=0.16 Score=51.27 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
.|||.|||||...++.+|.--....-.+++=-|.. ++. ....+....+..++.-+||+++
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt---D~~--R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT---DPE--RCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS---STT--TCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc---ccc--cchhhHHHHHHhheeEEEEecC
Confidence 47899999999999999965444333344433332 211 2233556677778888899986
No 61
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=92.73 E-value=0.27 Score=50.85 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=42.9
Q ss_pred cccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHH
Q 015067 266 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA 342 (413)
Q Consensus 266 ~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~ 342 (413)
+.++++ || .|||||. +|+|++++++.+.+.++++.. ....-.|++++++...+||+
T Consensus 212 pLl~~~-dg-~KmgKS~---~~~i~l~~~~~~~~i~~~d~~----------------D~~~~Ki~k~~t~~~~~ei~ 267 (377)
T TIGR00234 212 PLLTPA-DG-EKMGKSG---GGAVSLDEGKYDFYQFWINTP----------------DEDVKKILKLFTFLGLEEIE 267 (377)
T ss_pred eeecCC-CC-CCccCCC---CCcccCCccHhhhhhhhcCCc----------------HHHHHHHHHHcCCCcHHHHH
Confidence 588888 66 7999996 589999999977777754322 23566788888888888875
No 62
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=91.15 E-value=0.64 Score=50.51 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=42.4
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|.|=| .|||.|||||...++.+|.--+...-.+++=-|.. ++. ....+....+..++.-+|++++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT---Dp~--r~~~e~~~~I~~dL~wLGi~~D~ 119 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT---NPE--TEEQVYIDAIMEMVKWMGWKPDW 119 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---Ccc--ccChHHHHHHHHHHHHcCCCCCC
Confidence 44545 56699999999999989864433322333333332 221 23445666788888889999886
No 63
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=90.68 E-value=0.083 Score=54.20 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=33.2
Q ss_pred hccccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015067 207 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 207 l~~~adlVpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
-.+++|+.|.|.|+-. -...+.+||+++ || .+.|..+.-. +-.+. |.+|||||.
T Consensus 231 ~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~~-g~~kmSsSk- 287 (360)
T PF01921_consen 231 AALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLDK-GGGKMSSSK- 287 (360)
T ss_dssp HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEES-----------
T ss_pred hhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEeC-CCcccccCC-
Confidence 3468999999999999 999999999763 44 4556555432 23443 446999997
Q ss_pred CCCceeecCC-----CHHHHHH
Q 015067 284 SDQSRINLLD-----PKDVIAN 300 (413)
Q Consensus 284 ~~~s~I~L~D-----~pe~I~~ 300 (413)
++.|.+.| +||.++=
T Consensus 288 --G~~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 288 --GNGITPEEWLEYAPPESLRY 307 (360)
T ss_dssp -------HHHHHTTS-HHHHHH
T ss_pred --CCccCHHHHHHhcCHHHHHH
Confidence 57777665 6766654
No 64
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=90.56 E-value=0.97 Score=49.02 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCC-C----cc
Q 015067 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS-K----SH 153 (413)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~-k----S~ 153 (413)
|.+=| .|||.|||||.-.++.+|.--+...-.+++=-|.. ++. ....+....+..++.-+|++++ . |+
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT---d~~--r~~~e~~~~I~~dL~wLGi~~d~~~~~qS~ 104 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT---NPE--KEDQEYVDSIKEDVRWLGFDWSGELRYASD 104 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---CCC--cCChHHHHHHHHHHHHcCCCCCCCceeeec
Confidence 44555 45699999999999989864443322344433332 221 2334566677778888899994 3 33
Q ss_pred -hhcchhHHHH-------HhccccHHHHh
Q 015067 154 -VRAHVELMWL-------LSSATPIGWLN 174 (413)
Q Consensus 154 -i~~~~el~w~-------L~~~~~i~~l~ 174 (413)
+..+.+++.. +.|.++-.+++
T Consensus 105 r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 105 YFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred CHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 2223333321 35777766553
No 65
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=90.37 E-value=0.85 Score=50.62 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=49.5
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (413)
++..|-|++ -|+|.+||||..+.+ .-+.++++. ++|+++- .|.|..-. ..++ +..++++..+.++|
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 456777787 689999999987654 223344443 5776555 45554321 1244 45566778888999
Q ss_pred HHcCCCCCC
Q 015067 143 LACGIDNSK 151 (413)
Q Consensus 143 lA~GiDp~k 151 (413)
.++|++++.
T Consensus 82 ~~l~i~~d~ 90 (673)
T PRK00133 82 AGFGISFDN 90 (673)
T ss_pred HHhCCCCCC
Confidence 999998765
No 66
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.76 E-value=0.87 Score=49.50 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=49.3
Q ss_pred ceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceeecC-------CCCH-HHHHHHHHHHHHHHHH
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLA 144 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA 144 (413)
..|-|.+ -|.|.+||||....+ .-|.++|.. ++++ ++-.|-|..-. ..+| +.+.++......+|.+
T Consensus 7 ~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~ 86 (558)
T COG0143 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKA 86 (558)
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3343443 367999999977655 447777775 6664 45577775431 2366 4556677788899999
Q ss_pred cCCCCCC
Q 015067 145 CGIDNSK 151 (413)
Q Consensus 145 ~GiDp~k 151 (413)
++|+-+.
T Consensus 87 l~IsfD~ 93 (558)
T COG0143 87 LNISFDN 93 (558)
T ss_pred hCCcccc
Confidence 9998775
No 67
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=89.39 E-value=1 Score=49.00 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=43.0
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 79 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
-.|.+=|-| ||.+||||...++.+|.--+.. +.+++=|=| |++. ....+....+..++..+|++++.
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidD----TDp~--R~~~e~~~~I~edL~wLGi~~d~ 161 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDD----TDPR--RVKPEAYDMILEDLDWLGVKGDE 161 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCc----CCcc--cccHHHHHHHHHHHHHcCCCCCc
Confidence 346666655 5999999999999888643322 333333333 2221 33344667788888889999876
No 68
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=89.14 E-value=0.81 Score=49.33 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=39.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
.|||.|||||.-.++.+|.--+...-.+++=-|.. ++. ....+....+..++.-+|++++
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT---d~~--r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT---NPV--KEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC---Ccc--cCChHHHHHHHHHHHHcCCCCC
Confidence 58899999999999999964433322333333332 221 2333566677778888899984
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=87.93 E-value=0.68 Score=47.62 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=23.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH-HH--HHhhc-ccE-EEEEecce
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKN-WI--ALQNS-YET-LFFIVDLH 120 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~-~~--~lQ~~-~~~-~i~IaDlh 120 (413)
...+-||+.|||.+||||+--++.. ++ .|++. .++ +|+++|..
T Consensus 24 ~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~ 71 (360)
T PF01921_consen 24 PYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDM 71 (360)
T ss_dssp EEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TT
T ss_pred cEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecC
Confidence 5688899999999999998655422 22 35554 343 56667654
No 70
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=87.53 E-value=1.4 Score=47.50 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=47.2
Q ss_pred ceEEEecCCC--CcchhhhHHHH-H--HHHHHHhh--cccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHH
Q 015067 79 KRIVSGVQPT--GSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 79 ~~i~tGi~PT--G~lHLGnylg~-i--~~~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (413)
..+++.-=|+ |.+||||..+. + .-+.++++ .++|++.. .|.|..-. ..++ +..++++..+.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4566666676 99999998764 2 22333333 35665444 66664432 1245 44567788899999
Q ss_pred HHcCCCCCC
Q 015067 143 LACGIDNSK 151 (413)
Q Consensus 143 lA~GiDp~k 151 (413)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999875
No 71
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=86.82 E-value=1.5 Score=45.66 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhh--cccE-EEEEecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 015067 86 QPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 86 ~PTG~lHLGnylg~i--~~~~~lQ~--~~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
-|.|.+||||..+.+ .-+.++++ .+++ ++.-.|-|..-. ..+| +-+.++.....+.|.++||+.+.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 377999999976554 22333433 3565 455588887642 2366 45667778888899999998765
No 72
>PLN02907 glutamate-tRNA ligase
Probab=86.77 E-value=1.6 Score=48.91 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=42.3
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|.|=|- |||.|||||.-.++.+|.--+...-.+++==|. |++. ....+....+..++.-+|+++++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eD---Tdp~--r~~~e~~~~I~~dl~wLG~~~d~ 281 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDD---TNPS--KESDEFVENILKDIETLGIKYDA 281 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC---CCCC--cCChHHHHHHHHHHHHcCCCCCC
Confidence 4566665 559999999999999996433322234443333 2221 22334566777777888999986
No 73
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=86.39 E-value=2.3 Score=48.01 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=41.4
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|.|=|- |||.+||||...++.+|.--+...-.+++==|. |++. ....+....+..++.-+|++++.
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eD---Td~~--r~~~e~~~~I~~dl~wLG~~wd~ 99 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDD---TNPE--TEDTEYVEAIKDDVRWLGFDWGE 99 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCC---CCCC--cCChHHHHHHHHHHHHcCCCCCC
Confidence 3555554 569999999999998986443332233333333 2221 23335666777788888999764
No 74
>PLN02224 methionine-tRNA ligase
Probab=86.14 E-value=3.6 Score=45.44 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=49.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceee--cC-----CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI--TL-----PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~--t~-----~~~~-~~i~~~~~~~~a~~l 143 (413)
++.|-|++ -|+|.+||||..+.+ .-+.+++.. ++|+ ++-.|-|.. .. ..++ +.+++++....+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 35666777 778999999987654 224444443 5664 444788863 21 1233 666777778888999
Q ss_pred HcCCCCCC
Q 015067 144 ACGIDNSK 151 (413)
Q Consensus 144 A~GiDp~k 151 (413)
++||+++.
T Consensus 150 ~l~I~~D~ 157 (616)
T PLN02224 150 DLDIAYDK 157 (616)
T ss_pred HcCCCCCc
Confidence 99999875
No 75
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=84.02 E-value=0.69 Score=53.16 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=36.2
Q ss_pred hccccceeccccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015067 207 LLYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 207 l~~~adlVpvG~DQ~---~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
..+-+|+...|.||. -|-.+-..++- .| ...|..++.. ..+... +| +|||||.
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl- 597 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL- 597 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC-
Confidence 345689999999996 34444444442 23 1334444443 366554 56 7999997
Q ss_pred CCCceeec
Q 015067 284 SDQSRINL 291 (413)
Q Consensus 284 ~~~s~I~L 291 (413)
+|.|..
T Consensus 598 --GNvIdP 603 (912)
T PRK05743 598 --GNVIDP 603 (912)
T ss_pred --CCcCCH
Confidence 567654
No 76
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.74 E-value=1.1 Score=45.49 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=22.6
Q ss_pred CCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceee
Q 015067 87 PTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI 122 (413)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~ 122 (413)
|+|.+||||..+.+ .-+.+++.. ++|+ +.-.|.|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 46999999988754 224444443 5664 444676655
No 77
>PLN02610 probable methionyl-tRNA synthetase
Probab=82.26 E-value=6.2 Score=44.90 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCceEEEec-CCCCcchhhhHHHH-H--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHH
Q 015067 77 VKKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAI 141 (413)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~-i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~ 141 (413)
+++.|-|.+ -|+|.+||||..+. + .-|.+++.. ++|+|+. .|-|..-. ..+| +.+.++.......
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~ 96 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEV 96 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444444 35699999998863 3 335666664 5765544 67776642 2355 4556666777888
Q ss_pred HHHcCCCCCC
Q 015067 142 YLACGIDNSK 151 (413)
Q Consensus 142 ~lA~GiDp~k 151 (413)
|.++||+.+.
T Consensus 97 ~~~l~i~~D~ 106 (801)
T PLN02610 97 YDWFDISFDK 106 (801)
T ss_pred HHHcCCcccc
Confidence 9999998875
No 78
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=82.16 E-value=0.67 Score=53.17 Aligned_cols=59 Identities=31% Similarity=0.385 Sum_probs=35.4
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 285 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~--yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~ 285 (413)
|-+|+...|.||.. |+-+. .|++. ++. -+-|..++.. ..+.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~-----~~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFF-----IFNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHH-----HHHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999966 65555 23332 221 1335444443 24433 56 7999997
Q ss_pred CceeecCC
Q 015067 286 QSRINLLD 293 (413)
Q Consensus 286 ~s~I~L~D 293 (413)
+|.|.+.|
T Consensus 583 GNvVdp~e 590 (897)
T PRK12300 583 GNVIPLRK 590 (897)
T ss_pred CCCCCHHH
Confidence 67886543
No 79
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=82.14 E-value=3 Score=47.41 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=48.0
Q ss_pred CceEEEecCCC--CcchhhhHHHHH--HHHHHHhhc--ccEEEE-EecceeecC-------CCCH-HHHHHHHHHHHHHH
Q 015067 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQNS--YETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnylg~i--~~~~~lQ~~--~~~~i~-IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (413)
++.+++|. |+ |.+|+||.++.+ .-+.++|.. ++|.+. -.|-|.+-. ..++ +-..+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57777776 77 999999988764 224455554 566443 366665531 1233 55667788888999
Q ss_pred HHcCCCCC
Q 015067 143 LACGIDNS 150 (413)
Q Consensus 143 lA~GiDp~ 150 (413)
.++|+..+
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998544
No 80
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=81.81 E-value=4.6 Score=42.93 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCCcchhhhHHHHH--HHHHHHhhc--ccEEE-EEecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 015067 87 PTGSIHLGNYLGAI--KNWIALQNS--YETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|+|.+||||..+.+ .-+.+.++. ++|.+ +-.|.|..-. ..++ +..+.+...+.+++.++|++++.
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 45999999976644 224444443 56644 3366664311 1244 44556667888899999998764
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=81.57 E-value=2.8 Score=42.07 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=40.5
Q ss_pred CCCcchhhhHHHHHH--HHHHHhhc--ccEEE-EEecceeecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCC
Q 015067 87 PTGSIHLGNYLGAIK--NWIALQNS--YETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 87 PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|+|.+||||..+.+. -+.++++. ++|++ +-.|.|..-. ..+++ ..+.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 349999999887642 23334443 56643 3467774421 12554 4455566788889999998764
No 82
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.96 E-value=0.97 Score=46.70 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=36.5
Q ss_pred CCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceeecC-----------C-----CCHHH--------HHHHHHH
Q 015067 87 PTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAITL-----------P-----YDTQQ--------LSKATRE 137 (413)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~t~-----------~-----~~~~~--------i~~~~~~ 137 (413)
|+|.+||||..+.+ .-+.+++.. ++|+ +.-.|-|.+-. . .++++ .+++...
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK 91 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 56999999988765 224455554 5664 34467774310 0 12332 2344456
Q ss_pred HHHHHHHcCCCC
Q 015067 138 TAAIYLACGIDN 149 (413)
Q Consensus 138 ~~a~~lA~GiDp 149 (413)
+.+++.++|+..
T Consensus 92 ~~~~~~~lgi~~ 103 (382)
T cd00817 92 IREQLKRLGASV 103 (382)
T ss_pred HHHHHHHhCcee
Confidence 677788889743
No 83
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=80.39 E-value=1.3 Score=51.76 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=39.0
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
|-+|+...|.||. ++=++|-++.-+.. .| ..| ..++.. .+|..- +| +|||||. +|
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~-~~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHF-MG---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHh-cC---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4579999999998 45667777665442 12 235 333332 255543 56 7999997 67
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|+..|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 887654
No 84
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=79.49 E-value=0.98 Score=52.13 Aligned_cols=71 Identities=27% Similarity=0.303 Sum_probs=41.1
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhh--CCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 285 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~y--g~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~ 285 (413)
|-+|+...|.||.. |+.+. + |++.. +. . +-|..++.. ..+.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i---~~~~a~~~~-----------~--~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--I---FHHVAIFPE-----------K--FWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHH--H---HHHHHcCCc-----------c--ccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 66554 2 23221 11 0 124444433 23332 56 7999997
Q ss_pred CceeecCC-----CHHHHHHHhhhc
Q 015067 286 QSRINLLD-----PKDVIANKIKRC 305 (413)
Q Consensus 286 ~s~I~L~D-----~pe~I~~KI~kA 305 (413)
+|.|.+.| .++.++=-+..+
T Consensus 626 GNvI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 626 GNVLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHhc
Confidence 67887654 455555545443
No 85
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.32 E-value=2 Score=48.68 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhh--cccEEEEEecceeecCC---------CCH-HHHHHHHHHHHHH
Q 015067 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI 141 (413)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~i~IaDlhA~t~~---------~~~-~~i~~~~~~~~a~ 141 (413)
.++.|..-+ -|||.||+||..+-. .-+.++++ .++|.+-++ |||+=.| .+| .-...|+.++..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 356666665 589999999954321 22333433 377877776 8888554 245 5567788889999
Q ss_pred HHHcCCCCC
Q 015067 142 YLACGIDNS 150 (413)
Q Consensus 142 ~lA~GiDp~ 150 (413)
+.++|+.-+
T Consensus 113 lk~lG~siD 121 (814)
T COG0495 113 LKSLGFSID 121 (814)
T ss_pred HHHhCCccc
Confidence 999987543
No 86
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=79.02 E-value=1 Score=47.82 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=36.0
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
+.+|+...|.||...+-.. .+|.-+. .| .+.|..++.. ..+. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578899999998843221 1222211 12 2456555554 2443 4 66 7999997 688
Q ss_pred eecCC
Q 015067 289 INLLD 293 (413)
Q Consensus 289 I~L~D 293 (413)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 88754
No 87
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=78.37 E-value=1.5 Score=47.82 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.2
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015067 212 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 291 (413)
Q Consensus 212 dlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L 291 (413)
-+-.+|.||..|+.-...++..++ ++.|.-+..- .-++-.+ .|||||. ++.|++
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~----~~~~V~~-~kmSkr~---Gn~V~~ 383 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHL----NFGMVPL-GSMKTRR---GNVISL 383 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEE----EEEEEEC-CCCCccC---CceeeH
Confidence 345799999999999999999865 3334322211 1122223 5999997 689999
Q ss_pred CCCHHHHHH
Q 015067 292 LDPKDVIAN 300 (413)
Q Consensus 292 ~D~pe~I~~ 300 (413)
.|=.+++.+
T Consensus 384 ~dll~~~~~ 392 (566)
T TIGR00456 384 DNLLDEASK 392 (566)
T ss_pred HHHHHHHHH
Confidence 865444443
No 88
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=78.22 E-value=3.7 Score=45.41 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=44.2
Q ss_pred eEEEecC--CCCcchhhhHHHHH--HHHHHHhhc--ccE-EEEEecceeecC-------CCCH-HHHHHHHHHHHHHHHH
Q 015067 80 RIVSGVQ--PTGSIHLGNYLGAI--KNWIALQNS--YET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLA 144 (413)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~i--~~~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA 144 (413)
.++|.== |+|.+||||..+.+ .-+.++++. +++ +++-.|.|..-. ..++ +-++.+...+..+|.+
T Consensus 6 ~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~ 85 (648)
T PRK12267 6 FYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKK 85 (648)
T ss_pred EEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3344433 45999999977654 224444443 566 455578776532 1245 4455566778888999
Q ss_pred cCCCCCC
Q 015067 145 CGIDNSK 151 (413)
Q Consensus 145 ~GiDp~k 151 (413)
+|++++.
T Consensus 86 lgI~~D~ 92 (648)
T PRK12267 86 LDISYDK 92 (648)
T ss_pred cCCCCCC
Confidence 9997764
No 89
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=78.14 E-value=4.2 Score=43.66 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=39.7
Q ss_pred CCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 015067 87 PTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 87 PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|+|.+||||....+ .-+.++++. ++|.+.. .|.|..-. ..++ +-.+.+...+.+++.+.|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 78999999977654 223333333 5665444 55553321 1244 44455567888889999987653
No 90
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=77.76 E-value=11 Score=41.80 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=47.8
Q ss_pred hHHHHHhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 015067 199 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 277 (413)
Q Consensus 199 PvLQAADIl~~~adlVpvG~DQ-~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~K 277 (413)
...|+.|||-...|+--+|.|- -||+|- +||+.-- .+|.. .+ +..++.. .. ..+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~-----------~~--v~y~~H~--G~-L~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKH-----------QW--VNYFLHS--GH-LHI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCC-----------CC--CcEEEEE--EE-EEe-cc-ch
Confidence 4689999999999999999998 577643 3343311 13321 01 1122221 12 234 56 69
Q ss_pred cccCCCCCCceeecCC-----CHHHHHHHh
Q 015067 278 MSKSAPSDQSRINLLD-----PKDVIANKI 302 (413)
Q Consensus 278 MSKS~p~~~s~I~L~D-----~pe~I~~KI 302 (413)
||||. +|.|.+.| +++.++=-+
T Consensus 316 MSKSL---GNfItp~dlLekygaDaLR~~l 342 (651)
T PTZ00399 316 MSKSL---KNFITIRQALSKYTARQIRLLF 342 (651)
T ss_pred hhhcC---CCcccHHHHHHHcChHHHHHHH
Confidence 99997 68888754 455555433
No 91
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=77.43 E-value=2.1 Score=44.56 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=43.0
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eccee--ecC-----CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~l 143 (413)
..++| +|--|=+.+||||..+.+ .-+.++++. ++|.++. .|.|. ++. ..++ +..+.++.....++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444 555555999999977654 224444443 5665443 34441 111 1255 444566678888899
Q ss_pred HcCC-CCCC
Q 015067 144 ACGI-DNSK 151 (413)
Q Consensus 144 A~Gi-Dp~k 151 (413)
++|+ .|+.
T Consensus 89 ~Lni~~~~~ 97 (384)
T PRK12418 89 ALRVLPPRD 97 (384)
T ss_pred HhCCCCCCc
Confidence 9997 5554
No 92
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=77.21 E-value=1.6 Score=49.80 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=33.4
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
+-+|+...|.||.. |+-.....+--+ +| ...|..++.. ..+... +| +|||||. +|
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~---~~--------------~~P~k~v~~h--G~vl~~-~G-~KMSKSk---GN 618 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTAL---FG--------------QAPYKNVITH--GFTLDE-KG-RKMSKSL---GN 618 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHH---cC--------------CCChHhhEec--ceEECC-CC-CCcCCCC---CC
Confidence 45799999999965 222222222111 12 1223444433 255443 56 6999997 57
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|...|
T Consensus 619 vI~p~d 624 (861)
T TIGR00392 619 VVDPLK 624 (861)
T ss_pred CCCHHH
Confidence 887644
No 93
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.98 E-value=21 Score=40.82 Aligned_cols=64 Identities=25% Similarity=0.220 Sum_probs=36.4
Q ss_pred cccceeccccchHHHH-HHHHHHHHHHhhhhCCccccccCCCCCccccCCcc---ccCCCCcccccCCCCCCccccCCCC
Q 015067 209 YQSDFVPVGEDQKQHL-ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP---LIPPAGARVMSLTDGLSKMSKSAPS 284 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hl-eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~---l~~~~~~~i~sL~dg~~KMSKS~p~ 284 (413)
|=.|+-.+|.|+...+ -++ ||+|+.- ...| ..+..++ |++. .+|.+- +| .|||||.
T Consensus 525 ~PVD~yigG~ehavlHLly~-----rF~Hkal----~d~g-----~~p~~epf~~L~~q--GmVl~~-~g-~KMSKSK-- 584 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYF-----RFFHKAL----FDEG-----LVPKDEPFKKLITQ--GMVLGE-EG-EKMSKSK-- 584 (814)
T ss_pred cChheeecchhHHHHHHHHH-----HHHHHHh----cccC-----cCCCccchhhhhcc--ceEEec-CC-Ccccccc--
Confidence 3489999999998754 444 4666421 0111 1222211 4433 355553 45 6999997
Q ss_pred CCceeecCC
Q 015067 285 DQSRINLLD 293 (413)
Q Consensus 285 ~~s~I~L~D 293 (413)
+|.|.+.|
T Consensus 585 -gN~v~p~~ 592 (814)
T COG0495 585 -GNVVDPEE 592 (814)
T ss_pred -CCCCCHHH
Confidence 57887654
No 94
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=74.55 E-value=5.8 Score=40.26 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=32.3
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015067 209 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 285 (413)
Q Consensus 209 ~~adlVpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~ 285 (413)
+.+|+.+.|.||.. |..+-.-+ . .+| ...|..++.. ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~----~-~~~--------------~~p~~~~~~h--g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLST----A-LFG--------------KAPYKNVIVH--GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHH----H-hcC--------------CCccceEEEE--eeEECC-CC-CCCCCCC---
Confidence 34689999999975 33332222 1 122 1122333332 244333 56 6999997
Q ss_pred CceeecC
Q 015067 286 QSRINLL 292 (413)
Q Consensus 286 ~s~I~L~ 292 (413)
+|.|.+.
T Consensus 305 gn~i~~~ 311 (338)
T cd00818 305 GNYVDPQ 311 (338)
T ss_pred CCcCCHH
Confidence 6888863
No 95
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=74.40 E-value=17 Score=39.04 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEE--EecceeecC----------------CCCH-HHHH
Q 015067 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFF--IVDLHAITL----------------PYDT-QQLS 132 (413)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~--IaDlhA~t~----------------~~~~-~~i~ 132 (413)
...++| +|.-+-+.+||||....+ .-+.++++. ++|+++ |+|+--+|. ..++ +..+
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 345665 566666899999977644 223333333 677655 466621221 1234 3445
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 015067 133 KATRETAAIYLACGIDNS 150 (413)
Q Consensus 133 ~~~~~~~a~~lA~GiDp~ 150 (413)
.++.....++.++|+.+.
T Consensus 102 ~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 102 HYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 556678888899998653
No 96
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=73.36 E-value=2.3 Score=48.76 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=38.0
Q ss_pred ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCC
Q 015067 208 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 286 (413)
Q Consensus 208 ~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~ 286 (413)
.|-+|+...|.||... =++|-++.-... .| ..| ..++.. ..|-.. +| +|||||. +
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---C
Confidence 3568999999999864 556656544321 12 345 233322 355555 56 6999997 6
Q ss_pred ceeecCC
Q 015067 287 SRINLLD 293 (413)
Q Consensus 287 s~I~L~D 293 (413)
|.|...|
T Consensus 527 NvIdP~d 533 (874)
T PRK05729 527 NVIDPLD 533 (874)
T ss_pred CCCCHHH
Confidence 7887544
No 97
>PLN02563 aminoacyl-tRNA ligase
Probab=72.99 E-value=14 Score=43.00 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred CceEEEec-CCCCc-chhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHH
Q 015067 78 KKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 78 ~~~i~tGi-~PTG~-lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (413)
++.|++|+ -|+|. +|+||..+.+ .-+.+++.. ++|++.. -|-|.+-. ...+ +...+++..+...+
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35677776 34597 9999987654 224455554 6665444 45565531 1123 45567778888899
Q ss_pred HHcCCCC
Q 015067 143 LACGIDN 149 (413)
Q Consensus 143 lA~GiDp 149 (413)
..+|+..
T Consensus 191 ~~lG~s~ 197 (963)
T PLN02563 191 KSLGFSY 197 (963)
T ss_pred HHhCcEe
Confidence 9999643
No 98
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=72.69 E-value=5.6 Score=45.51 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred ceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCC-HHHHHHHHHHHHHHHHH
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYD-TQQLSKATRETAAIYLA 144 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~-~~~i~~~~~~~~a~~lA 144 (413)
+.+++|+ -|||.+|+||..+.+ .-+.++|.. ++|++.. -|-|.+-. ..+ .+-..+++..+..++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4555552 234999999988754 224455554 6765444 55565521 123 35667778888899999
Q ss_pred cCCCC
Q 015067 145 CGIDN 149 (413)
Q Consensus 145 ~GiDp 149 (413)
.|+..
T Consensus 111 lG~~~ 115 (842)
T TIGR00396 111 LGFSY 115 (842)
T ss_pred hCCcc
Confidence 99754
No 99
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=72.65 E-value=4.7 Score=41.62 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=33.7
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
+.+|+...|.||....-.. .++.-.- ..| ..| ..++.. ..+.++ +| +|||||. +|
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CC
Confidence 3579999999997544322 3333221 112 124 222222 356555 56 6999997 67
Q ss_pred eeecC
Q 015067 288 RINLL 292 (413)
Q Consensus 288 ~I~L~ 292 (413)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 88763
No 100
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=72.44 E-value=2.2 Score=46.76 Aligned_cols=59 Identities=29% Similarity=0.359 Sum_probs=30.4
Q ss_pred cccceeccccchHHHH-HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQHL-ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hl-eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
|-+|+..-|.||.... ....-+...+ ++. .-| +..+++ .++... +| +|||||. +|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l---~~~-----------~pf--k~v~~h---G~vld~-~G-~KMSKS~---GN 568 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVAL---FGK-----------EPF--KKVITH---GFVLDE-DG-RKMSKSK---GN 568 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHH---SSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB
T ss_pred CCcccccCCccchhhHHHHhHhhcccc---ccC-----------Cch--heeeec---cccccc-ce-eecccCC---Cc
Confidence 5689999999997543 2222222221 232 113 233333 266655 56 7999997 57
Q ss_pred eeec
Q 015067 288 RINL 291 (413)
Q Consensus 288 ~I~L 291 (413)
.|.+
T Consensus 569 vi~p 572 (601)
T PF00133_consen 569 VIDP 572 (601)
T ss_dssp --BH
T ss_pred ccCH
Confidence 7764
No 101
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.23 E-value=12 Score=40.66 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=40.5
Q ss_pred eEEEe--cCCCCcchhhhHHHHHHHHHHHhhcccE-EEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 80 RIVSG--VQPTGSIHLGNYLGAIKNWIALQNSYET-LFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 80 ~i~tG--i~PTG~lHLGnylg~i~~~~~lQ~~~~~-~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.|.+- =+|||.+||||.-.++.||- +|.+|+- +|.-=|. |+|. +.++.+. .+..++--.||.|++
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRFDD---TNPaKE~~eFe~---~IleDl~~LgIkpd~ 268 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRFDD---TNPAKENEEFED---VILEDLSLLGIKPDR 268 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEecC---CCcchhhHHHHH---HHHHHHHHhCcCcce
Confidence 44444 47789999999988887764 6666542 2222232 4443 3344444 455566668999998
No 102
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=72.06 E-value=23 Score=40.42 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=18.9
Q ss_pred cccceeccccch-HHHHHHHHHHH
Q 015067 209 YQSDFVPVGEDQ-KQHLELTRELA 231 (413)
Q Consensus 209 ~~adlVpvG~DQ-~~hleLaRdiA 231 (413)
|-+|+.+.|.|| .-|+-.+|-..
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~ 545 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFT 545 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH
Confidence 459999999999 68888888554
No 103
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=71.78 E-value=3.1 Score=47.19 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=33.6
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
-+|+...|.||.. +-+.+-++...- .+| ..| ..++.. ..+... +| +|||||. +|.
T Consensus 486 P~d~~~~G~Di~~-~w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIR-TWLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GNV 541 (800)
T ss_pred CceEEEeecchhh-hHHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CCC
Confidence 4789999999985 223333433221 122 123 233322 255444 56 7999997 577
Q ss_pred eecCC
Q 015067 289 INLLD 293 (413)
Q Consensus 289 I~L~D 293 (413)
|.+.|
T Consensus 542 i~p~~ 546 (800)
T PRK13208 542 VTPEE 546 (800)
T ss_pred CCHHH
Confidence 87543
No 104
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=71.26 E-value=3.3 Score=43.52 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=45.0
Q ss_pred CceE-EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecce--eecC-----CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLH--AITL-----PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i-~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlh--A~t~-----~~~~-~~i~~~~~~~~a~~l 143 (413)
..++ .+|--|=+.+||||..+.+ .-|+++++. ++|+++. .|.| +++. ..++ +..+.++.....++.
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~ 115 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDME 115 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 4676666999999977654 335555443 6776554 3444 1221 1255 445566778888899
Q ss_pred HcCCC-CCC
Q 015067 144 ACGID-NSK 151 (413)
Q Consensus 144 A~GiD-p~k 151 (413)
++|+- |+.
T Consensus 116 ~Lni~~~d~ 124 (411)
T TIGR03447 116 ALRVLPPRD 124 (411)
T ss_pred HcCCCCCCc
Confidence 99864 544
No 105
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=70.60 E-value=2.6 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.3
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
..++..+|.|+..++-+.- .|--+. .| .+.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578899999998753311 111111 11 3445555443 122 33 56 6999997 6788
Q ss_pred ecC
Q 015067 290 NLL 292 (413)
Q Consensus 290 ~L~ 292 (413)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 763
No 106
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=68.08 E-value=3.9 Score=46.77 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=36.0
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
|-+|+...|.||.... ++|-++.-.. ..| +.| ..++.. ..+... +| +|||||. +|
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---GN 532 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---GN 532 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---CC
Confidence 5689999999997653 4444543211 112 234 233322 255554 56 7999997 57
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|.+.|
T Consensus 533 ~i~p~~ 538 (861)
T TIGR00422 533 VIDPLD 538 (861)
T ss_pred CCCHHH
Confidence 777544
No 107
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.95 E-value=12 Score=42.94 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015067 385 VLADGAAKAADIADATLNNVYQA 407 (413)
Q Consensus 385 iL~~Ga~kAr~iA~~tl~~v~~a 407 (413)
.|..+ +.++..|..||..|.+.
T Consensus 656 ~l~~~-~~~~~~a~~tL~~vl~~ 677 (877)
T COG0525 656 RLYGG-EEEKRAARATLYYVLDT 677 (877)
T ss_pred hhcCc-HHHHHHHHHHHHHHHHH
Confidence 44455 66666777777766654
No 108
>PLN02959 aminoacyl-tRNA ligase
Probab=67.84 E-value=4.4 Score=47.62 Aligned_cols=60 Identities=28% Similarity=0.308 Sum_probs=33.9
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCC
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 286 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~--yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~ 286 (413)
|=+|+...|.||.... |+.-+ |++. +|+ -+-|..++.. ..|. + +| +|||||. +
T Consensus 670 yP~Dl~~sG~Dii~~w-l~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---G 724 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNH-LTFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---G 724 (1084)
T ss_pred CCCeEEEecccHHHHH-HHHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---C
Confidence 5689999999996654 22222 3322 231 1223323322 2444 3 67 7999997 5
Q ss_pred ceeecCC
Q 015067 287 SRINLLD 293 (413)
Q Consensus 287 s~I~L~D 293 (413)
|.|.+.|
T Consensus 725 NvI~p~d 731 (1084)
T PLN02959 725 NFLTLRQ 731 (1084)
T ss_pred CcCCHHH
Confidence 7777644
No 109
>PLN02943 aminoacyl-tRNA ligase
Probab=67.57 E-value=4.3 Score=47.07 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=47.2
Q ss_pred chhhhhhHHHHHhh-hccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCcc-ccCCCCccccc
Q 015067 193 VALLTYPVLMASDI-LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMS 270 (413)
Q Consensus 193 ~g~l~YPvLQAADI-l~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~-l~~~~~~~i~s 270 (413)
++.+.||-....+. ..|-+|+...|.||. .+=++|-++.-.. ..| +.|.. +... ..+..
T Consensus 518 ~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~h--g~v~~ 578 (958)
T PLN02943 518 FSTLGWPDVSAEDFKKFYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLH--GLIRD 578 (958)
T ss_pred HHhcCCCccChHHHhccCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEe--ccEEC
Confidence 34444654322222 235579999999998 5666776653211 112 33522 2222 24444
Q ss_pred CCCCCCccccCCCCCCceeecCC-----CHHHHHHHhh
Q 015067 271 LTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIK 303 (413)
Q Consensus 271 L~dg~~KMSKS~p~~~s~I~L~D-----~pe~I~~KI~ 303 (413)
. +| +|||||. +|.|...| .++.++==+.
T Consensus 579 ~-~G-~KMSKS~---GN~i~p~~~i~~ygaDalR~~l~ 611 (958)
T PLN02943 579 S-QG-RKMSKTL---GNVIDPLDTIKEFGTDALRFTLA 611 (958)
T ss_pred C-CC-CcccCcC---CCCCCHHHHHHhcCChHHHHHHH
Confidence 4 56 7999997 67887654 3455554443
No 110
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=67.26 E-value=3.7 Score=47.66 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=12.9
Q ss_pred hccccceeccccchHH
Q 015067 207 LLYQSDFVPVGEDQKQ 222 (413)
Q Consensus 207 l~~~adlVpvG~DQ~~ 222 (413)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 111
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=66.87 E-value=3 Score=46.08 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=34.5
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
.+|+...|.||..++-+- =.-+-...| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~---wpa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIY---WPIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHH---HHHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 468899999998754321 011111112 5567666554 2332 2 45 7999997 6788
Q ss_pred ecCC
Q 015067 290 NLLD 293 (413)
Q Consensus 290 ~L~D 293 (413)
+..|
T Consensus 309 ~p~d 312 (648)
T PRK12267 309 DPEE 312 (648)
T ss_pred CHHH
Confidence 7654
No 112
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.07 E-value=18 Score=38.19 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhhc-ccEEEEE--ecceeec-------CC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 86 QPTGSIHLGNYLGAI--KNWIALQNS-YETLFFI--VDLHAIT-------LP-YDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 86 ~PTG~lHLGnylg~i--~~~~~lQ~~-~~~~i~I--aDlhA~t-------~~-~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
-|...+||||....+ ....++|.- ++.+||. .|-|.+- +. ..++.......+....|.+.|+.-.+
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~ 127 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK 127 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh
Confidence 356789999977665 445567775 6666666 7888774 22 24577777788888889999987654
No 113
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=66.06 E-value=5.6 Score=46.28 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=37.4
Q ss_pred ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCCccccCCCCCC
Q 015067 208 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 286 (413)
Q Consensus 208 ~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~i~sL~dg~~KMSKS~p~~~ 286 (413)
.|-+|+...|.||.. +=++|-++.-+. ..| +.|. .++.. ..|.+- +| +|||||. +
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~-~~~---------------~~Pfk~v~~H--G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLH-LTD---------------KLPFKTVFLH--AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHH-hcC---------------CCChHHHhcc--ceEECC-CC-CCcccCC---C
Confidence 356899999999865 555665555432 111 3452 33332 366664 56 7999997 5
Q ss_pred ceeecC
Q 015067 287 SRINLL 292 (413)
Q Consensus 287 s~I~L~ 292 (413)
|.|...
T Consensus 592 NvIdP~ 597 (995)
T PTZ00419 592 NVIDPL 597 (995)
T ss_pred CcCChH
Confidence 777543
No 114
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=65.85 E-value=4.5 Score=47.01 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.3
Q ss_pred ccccceeccccchHH
Q 015067 208 LYQSDFVPVGEDQKQ 222 (413)
Q Consensus 208 ~~~adlVpvG~DQ~~ 222 (413)
.+-+|+...|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 356899999999965
No 115
>PLN02843 isoleucyl-tRNA synthetase
Probab=65.35 E-value=4.3 Score=47.20 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hccccceeccccchHH
Q 015067 207 LLYQSDFVPVGEDQKQ 222 (413)
Q Consensus 207 l~~~adlVpvG~DQ~~ 222 (413)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999986
No 116
>PLN02660 pantoate--beta-alanine ligase
Probab=65.33 E-value=19 Score=36.00 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.7
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
.++|....|+--.|-+.+.|.+++.+| | |.-++.- +.+-- .|| =-||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~------------------~--~v~I~~~--ptvRe-~dG-LA~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLD------------------F--DIEVVGS--PIVRE-ADG-LAMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcC------------------C--CceEEee--CceEC-CCC-Ceecccc------
Confidence 389999999999999999999999977 2 3223322 12222 366 4787663
Q ss_pred eecCCCHHHHHHHhhhccC
Q 015067 289 INLLDPKDVIANKIKRCKT 307 (413)
Q Consensus 289 I~L~D~pe~I~~KI~kA~T 307 (413)
.||++...+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 6787777777777766554
No 117
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.33 E-value=55 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 291 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L 291 (413)
++.|..++... .+ -+ +| +|||||. ++.|+.
T Consensus 315 ~~lP~~i~ahg--~l-~~-~G-~KmSKSr---G~~V~~ 344 (558)
T COG0143 315 LPLPTRIFAHG--FL-TL-EG-QKMSKSR---GNVVDP 344 (558)
T ss_pred CCCCCEEEeee--eE-EE-CC-ccccccC---CcEEeH
Confidence 45677666541 21 22 56 5999997 678874
No 118
>PLN02381 valyl-tRNA synthetase
Probab=63.64 E-value=5.8 Score=46.58 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=37.6
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCccccCCCCCC
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 286 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~--~l~~~~~~~i~sL~dg~~KMSKS~p~~~ 286 (413)
|-+|+..-|.||. ++=++|-+..-+- ..| ..|. .+++ .+|-+- +| +|||||. +
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~-~~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~---G 661 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQ-LGG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL---G 661 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHH-hCC---------------CCchHHheec---ceEECC-CC-CCCCCCC---C
Confidence 5689999999998 6666776654432 112 2342 2222 366665 56 6999997 5
Q ss_pred ceeecC
Q 015067 287 SRINLL 292 (413)
Q Consensus 287 s~I~L~ 292 (413)
|.|...
T Consensus 662 NvIdP~ 667 (1066)
T PLN02381 662 NVIDPL 667 (1066)
T ss_pred CCCCHH
Confidence 777643
No 119
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.70 E-value=6.2 Score=43.24 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=44.3
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 211 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 211 adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
--+-.+|.||.+|+...+-+++... | ..+. .+++. +-.++...+| .||||-. ++.|
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g--~----------------~~~~~~~~h~-~~~l~~~~~g-~kmStR~---G~~v 392 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLG--Y----------------GPDKEVLLHQ-GVGLVRGGEG-VKMSTRA---GNVV 392 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhc--C----------------CCccceEEEE-EEeeeECCCC-ccccccC---CceE
Confidence 3445899999999999999988865 2 2232 22221 1233333234 6899997 6899
Q ss_pred ecCCCHHHHHHH
Q 015067 290 NLLDPKDVIANK 301 (413)
Q Consensus 290 ~L~D~pe~I~~K 301 (413)
.|.|=-+++.+|
T Consensus 393 tl~dllde~~er 404 (577)
T COG0018 393 TLDDLLDEAGER 404 (577)
T ss_pred EHHHHHHHHHHH
Confidence 998866666633
No 120
>PLN02563 aminoacyl-tRNA ligase
Probab=61.19 E-value=6.6 Score=45.62 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.4
Q ss_pred ccccceeccccch-HHHHHHHHHHHHHHh
Q 015067 208 LYQSDFVPVGEDQ-KQHLELTRELAERVN 235 (413)
Q Consensus 208 ~~~adlVpvG~DQ-~~hleLaRdiA~r~n 235 (413)
.+-+|+..+|.|| .-||-.+|-....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 3569999999999 688888888876554
No 121
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.53 E-value=6.1 Score=42.03 Aligned_cols=79 Identities=27% Similarity=0.195 Sum_probs=48.6
Q ss_pred hhhHHHHHhhhccccceeccccc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC
Q 015067 197 TYPVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 275 (413)
Q Consensus 197 ~YPvLQAADIl~~~adlVpvG~D-Q~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~ 275 (413)
+=+..|+.++|--.-|+--+|.| +-||+|- |||+.-- .+|.+ .|. -.-+++ .+|+ . +|
T Consensus 208 IECSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~a-~yWmH~---G~l~-i-~g- 266 (464)
T COG0215 208 IECSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PFA-KYWMHN---GFLN-I-DG- 266 (464)
T ss_pred HHHHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cce-eEeEEc---ceee-e-cC-
Confidence 34468899998888999999999 6789975 4554422 23311 111 011222 1332 2 56
Q ss_pred CccccCCCCCCceeecCC-----CHHHHH
Q 015067 276 SKMSKSAPSDQSRINLLD-----PKDVIA 299 (413)
Q Consensus 276 ~KMSKS~p~~~s~I~L~D-----~pe~I~ 299 (413)
.|||||. +|.|.+.| +|++++
T Consensus 267 eKMSKSL---GNfiti~d~l~~~~p~~lR 292 (464)
T COG0215 267 EKMSKSL---GNFITVRDLLKKYDPEVLR 292 (464)
T ss_pred cCccccc---CCeeEHHHHHhhcCHHHHH
Confidence 7999997 67888765 455554
No 122
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=60.10 E-value=6.6 Score=39.54 Aligned_cols=39 Identities=21% Similarity=-0.014 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhccccceeccccchH-HHHHHHHHHHHHHh
Q 015067 197 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVN 235 (413)
Q Consensus 197 ~YPvLQAADIl~~~adlVpvG~DQ~-~hleLaRdiA~r~n 235 (413)
+=...|+...|-..-|+--+|.|-. ||+|=-+-.++-.+
T Consensus 193 iECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~ 232 (300)
T PF01406_consen 193 IECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT 232 (300)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH
T ss_pred eehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh
Confidence 3346788888888899999999975 89887666655543
No 123
>PLN02882 aminoacyl-tRNA ligase
Probab=58.27 E-value=8.2 Score=45.74 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=40.8
Q ss_pred ccchhhhhhHHHHHhhh--ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCccc
Q 015067 191 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARV 268 (413)
Q Consensus 191 ~~~g~l~YPvLQAADIl--~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i 268 (413)
.+++.+-||- ..-+.| .+=+|++.-|.||..-- +.+-++...- .+| .+.|..++.. ..+
T Consensus 547 ~p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~--------------~~pfk~Vivh--G~v 607 (1159)
T PLN02882 547 MPYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFD--------------KPAFKNLICN--GLV 607 (1159)
T ss_pred cHHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcC--------------CCCcceeEEc--cEE
Confidence 3455666663 112221 24599999999998753 4443433321 233 1233344432 243
Q ss_pred ccCCCCCCccccCCCCCCceee
Q 015067 269 MSLTDGLSKMSKSAPSDQSRIN 290 (413)
Q Consensus 269 ~sL~dg~~KMSKS~p~~~s~I~ 290 (413)
..= +| +|||||. +|.|.
T Consensus 608 lde-~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 608 LAE-DG-KKMSKSL---KNYPD 624 (1159)
T ss_pred ECC-CC-CCcccCC---CCCCC
Confidence 332 56 7999997 56764
No 124
>PLN02286 arginine-tRNA ligase
Probab=58.14 E-value=11 Score=41.28 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=40.7
Q ss_pred ceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015067 212 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 291 (413)
Q Consensus 212 dlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L 291 (413)
-+-.+|.||..|+.--..+++.++.... ..-..-+++.. .+|-++ +| +||||-. ++.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4557999999999999999998762100 00001122222 266444 56 6999885 689999
Q ss_pred CCCHH
Q 015067 292 LDPKD 296 (413)
Q Consensus 292 ~D~pe 296 (413)
.|=-+
T Consensus 390 ~dlld 394 (576)
T PLN02286 390 VDLLD 394 (576)
T ss_pred HHHHH
Confidence 76333
No 125
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=56.98 E-value=8.1 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.0
Q ss_pred cccceeccccch-HHHHHHHHHHH
Q 015067 209 YQSDFVPVGEDQ-KQHLELTRELA 231 (413)
Q Consensus 209 ~~adlVpvG~DQ-~~hleLaRdiA 231 (413)
|-+|+...|.|| .-||-.+|-..
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~ 542 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWH 542 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHH
Confidence 459999999999 67887778765
No 126
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=56.92 E-value=6.5 Score=42.47 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=32.7
Q ss_pred ceeccccchHHHHH-HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015067 212 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 290 (413)
Q Consensus 212 dlVpvG~DQ~~hle-LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~ 290 (413)
++...|.|+...+. +---+..-.+ .-++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~----------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSG----------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcC----------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 47888999976443 2222211111 114567655543 2443 4 56 7999997 57877
Q ss_pred cCC
Q 015067 291 LLD 293 (413)
Q Consensus 291 L~D 293 (413)
+.|
T Consensus 345 p~d 347 (556)
T PRK12268 345 VDD 347 (556)
T ss_pred HHH
Confidence 543
No 127
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=55.50 E-value=15 Score=42.81 Aligned_cols=44 Identities=30% Similarity=0.273 Sum_probs=27.6
Q ss_pred ceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEE-EEecceee
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLF-FIVDLHAI 122 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i-~IaDlhA~ 122 (413)
+.|.+|. -|||.+|+||.++.. .-+.++|.. ++|.+ .-.|-|.+
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 4555554 357999999988754 224455554 56644 44677766
No 128
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=54.93 E-value=7.2 Score=41.90 Aligned_cols=74 Identities=23% Similarity=0.130 Sum_probs=44.4
Q ss_pred hhhhhhHHHHHhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 015067 194 ALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 272 (413)
Q Consensus 194 g~l~YPvLQAADIl~~~adlVpvG~DQ-~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~ 272 (413)
|--+=..-|+...|--.-|+.-+|.|- .||+|- ++|+..- .+|. +-+...+.. -...+
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a-~~g~--------------~~~~~w~h~---g~l~~- 275 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEA-ATGK--------------PWVRYWLHH---EFLLM- 275 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHH-hcCC--------------CcceEEEEc---CEEee-
Confidence 555556667777776677999999996 477765 4444321 1231 223333332 22233
Q ss_pred CCCCccccCCCCCCceeecC
Q 015067 273 DGLSKMSKSAPSDQSRINLL 292 (413)
Q Consensus 273 dg~~KMSKS~p~~~s~I~L~ 292 (413)
+| +|||||. +|.|.+.
T Consensus 276 ~g-~KMSKSl---GN~itl~ 291 (490)
T PRK14536 276 NK-GKMSKSA---GQFLTLS 291 (490)
T ss_pred cC-ccccccC---CCcccHH
Confidence 55 6999997 5788773
No 129
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=53.45 E-value=18 Score=41.18 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=41.4
Q ss_pred CceEEE-ecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC--------CCCH-------------HH
Q 015067 78 KKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL--------PYDT-------------QQ 130 (413)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~--------~~~~-------------~~ 130 (413)
++.+.+ .--|+|.+||||.++.+ .-+.+++.. ++|.+.. -|-|.+-. ..++ +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 345555 33567999999988764 224445443 5665443 56665421 1111 13
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 015067 131 LSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 131 i~~~~~~~~a~~lA~GiDp~ 150 (413)
..+++..+..++.+.|+..+
T Consensus 119 ~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHhCeeec
Confidence 33455567778888897443
No 130
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=53.08 E-value=29 Score=28.14 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHH
Q 015067 319 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 363 (413)
Q Consensus 319 ~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~ 363 (413)
.|.-|..+++++. .|.+.+|+.++|-.+...++..+|.-+...
T Consensus 29 tRI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 29 TRIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ceecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4555677777777 699999999999999888988888776655
No 131
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=52.33 E-value=9.3 Score=41.01 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.4
Q ss_pred eeccccchHHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015067 213 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 291 (413)
Q Consensus 213 lVpvG~DQ~~hleLaR-diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L 291 (413)
+.+.|.|...++-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999988643321 11111 12 4456665544 2443 3 45 7999997 688876
Q ss_pred CC
Q 015067 292 LD 293 (413)
Q Consensus 292 ~D 293 (413)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 44
No 132
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.65 E-value=10 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCCcchhhhHHHH--HHHHHHHhhc--ccEEEEEecceee
Q 015067 87 PTGSIHLGNYLGA--IKNWIALQNS--YETLFFIVDLHAI 122 (413)
Q Consensus 87 PTG~lHLGnylg~--i~~~~~lQ~~--~~~~i~IaDlhA~ 122 (413)
+||.+|+||.+.. +.-.++++.. ++++++-+=.||=
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAG 83 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAG 83 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCC
Confidence 4899999998743 2334455553 6777777666653
No 133
>PLN02843 isoleucyl-tRNA synthetase
Probab=49.65 E-value=34 Score=39.93 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=40.9
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEecceeecC--------------CCCHHHHHHHHHHH
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL--------------PYDTQQLSKATRET 138 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t~--------------~~~~~~i~~~~~~~ 138 (413)
+.+..|. -++|.+||||.+..+.+ +++++.. +++. +.--|-|.+-. ..+++.+++.+++.
T Consensus 34 f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~ 113 (974)
T PLN02843 34 FTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKF 113 (974)
T ss_pred EEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHH
Confidence 4444443 35799999999876522 4444443 5553 44456664421 11455565554433
Q ss_pred --------HHHHHHcCC--CCCC
Q 015067 139 --------AAIYLACGI--DNSK 151 (413)
Q Consensus 139 --------~a~~lA~Gi--Dp~k 151 (413)
..++...|+ |-++
T Consensus 114 ~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 114 AKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHhCCceecCC
Confidence 446678888 6555
No 134
>PLN02610 probable methionyl-tRNA synthetase
Probab=48.77 E-value=6.4 Score=44.83 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred eeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecC
Q 015067 213 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 292 (413)
Q Consensus 213 lVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~ 292 (413)
+..+|.|-..++-+- |+.|-...+.-++.|..++.. ..+ -+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~---------------wPa~L~a~g~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVM---------------FPSTLLGTGENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHH---------------HHHHHHhCCCCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 678899887777542 222221111224577776654 233 23 67 6999997 5788754
No 135
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=47.92 E-value=18 Score=39.43 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=38.9
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-cccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 211 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 211 adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
--+-.+|.||..|+.-...+++.++.. .+. ..+-.. .+| .+ +| +||||-. ++.|
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~------------------~~~~l~h~~~-g~V-~~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYT------------------WVDGMEHVPF-GLI-LK-DG-KKMSTRK---GRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCC------------------cccCeEEEee-eeE-ec-CC-CCCcCCC---CCee
Confidence 345589999999999999999987621 111 111111 133 34 55 5999997 6889
Q ss_pred ecCCC
Q 015067 290 NLLDP 294 (413)
Q Consensus 290 ~L~D~ 294 (413)
.|.|=
T Consensus 381 ~l~dL 385 (562)
T PRK12451 381 LLEEV 385 (562)
T ss_pred EHHHH
Confidence 88763
No 136
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=47.23 E-value=58 Score=32.58 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=47.1
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
.++|....|+--.|-+.+.|.+++.+| | |.-++.- +.+-. .|| ==||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~------------------~--~v~I~~~--ptvRe-~dG-LA~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF------------------L--DIEIVPV--PIVRE-EDG-LALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC------------------C--CceEEEe--CceEC-CCC-Cchhhcc------
Confidence 389999999999999999999999977 2 3223322 12222 356 4777663
Q ss_pred eecCCCHHHHHHHhhhccC
Q 015067 289 INLLDPKDVIANKIKRCKT 307 (413)
Q Consensus 289 I~L~D~pe~I~~KI~kA~T 307 (413)
.||+....+....|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 6777777777666666554
No 137
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=46.79 E-value=35 Score=36.23 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+|+=..=-|||.+|||-.-.|+.|++--.+. ++.+.=|-| .-.+ ..+......+..++.=+||+++.
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiED-TDq~-----R~v~gs~e~i~~~L~w~nl~~DE 101 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIED-TDQK-----RLIRGSEEAIYEDLKWANLDWDE 101 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEecc-cccc-----ccccchHHHHHHHHHhcCCCccc
Confidence 4555555678999999999998887643333 344444432 1111 22222334555667778999876
No 138
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=46.63 E-value=2.1e+02 Score=25.33 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=60.8
Q ss_pred CccchHHHHHHhcCCCCH--HHHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 015067 321 PECNNLLSIYQLISGKTK--GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIAD 398 (413)
Q Consensus 321 pev~~ll~i~~~~~~~~~--eel~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~ 398 (413)
.+.+|+=..++++++.+. ++-..+| .++++.+.++|...+..+.+-|......-..+..-+.+..++.+++ +
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~f-----~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K 92 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQEF-----EELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-K 92 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456677777888776553 3333333 3578888888888888888888877777777777788888887776 7
Q ss_pred HHHHHHHHHcCCC
Q 015067 399 ATLNNVYQAMGFL 411 (413)
Q Consensus 399 ~tl~~v~~a~Gl~ 411 (413)
+.|...++.+|..
T Consensus 93 ~~L~~ak~~L~~~ 105 (142)
T PF04048_consen 93 ESLQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHHHhcC
Confidence 7888888887654
No 139
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.49 E-value=10 Score=40.66 Aligned_cols=38 Identities=32% Similarity=0.158 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHhhhccccceeccccchH-HHH--HHHHHHH
Q 015067 194 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELA 231 (413)
Q Consensus 194 g~l~YPvLQAADIl~~~adlVpvG~DQ~-~hl--eLaRdiA 231 (413)
|-=+=...||+|||-.+-|+--+|.|=. ||+ |+|.--|
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA 282 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEA 282 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHH
Confidence 4445567899999999999999999975 566 4444333
No 140
>PLN02224 methionine-tRNA ligase
Probab=45.77 E-value=13 Score=41.05 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=35.6
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
..++..+|.|-..++-+-= -|--+. -| ++.|..++.. ..+ .+ +| +|||||. +|.|
T Consensus 321 ~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~i 375 (616)
T PLN02224 321 PASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNTL 375 (616)
T ss_pred CcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEec--ccE-ec-CC-ccccccC---CccC
Confidence 4678899999888643321 111111 11 4667766654 233 34 67 7999997 6788
Q ss_pred ecCC
Q 015067 290 NLLD 293 (413)
Q Consensus 290 ~L~D 293 (413)
++.|
T Consensus 376 ~p~e 379 (616)
T PLN02224 376 EPFE 379 (616)
T ss_pred CHHH
Confidence 7654
No 141
>PLN02943 aminoacyl-tRNA ligase
Probab=43.22 E-value=26 Score=40.75 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=27.8
Q ss_pred ceEEEe-cCCCCcchhhhHHHHH--HHHHHHhh--cccEEEEE-ecceeec
Q 015067 79 KRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAIT 123 (413)
Q Consensus 79 ~~i~tG-i~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~i~I-aDlhA~t 123 (413)
+.|..| =-+||.+|+||.+... .-+.+++. +++|.+.. .|-|++-
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~ 140 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIA 140 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccch
Confidence 555565 5578999999988653 22334444 36665444 6666663
No 142
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=43.14 E-value=11 Score=38.52 Aligned_cols=73 Identities=27% Similarity=0.223 Sum_probs=42.2
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015067 211 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 290 (413)
Q Consensus 211 adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~ 290 (413)
.-+-.+|.||..|+.-...+++.++..-. ... ..+-.. .++. +.||..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~~-~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------AVK-LQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HCT-EEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CCE-EEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 44558999999999999999998873100 011 111110 1222 336623799996 68998
Q ss_pred cCCCHHHHHHHhhh
Q 015067 291 LLDPKDVIANKIKR 304 (413)
Q Consensus 291 L~D~pe~I~~KI~k 304 (413)
|.|=-++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 86644444444444
No 143
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=42.87 E-value=97 Score=25.28 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhhchHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015067 351 GTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 406 (413)
Q Consensus 351 ~dlK~~Lae~I~~~L~pirer~~~~~~d-~~~l~~iL~~Ga~kAr~iA~~tl~~v~~ 406 (413)
.++...+++...+..+.+|++..+..++ .+.+.+......+++++.+..|=.-|++
T Consensus 15 ~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 15 EDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777766553 2445555556666666666666666654
No 144
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=42.66 E-value=15 Score=42.11 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=27.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~ 122 (413)
++.|++|. -+||.+|+||.+... .-+.+++.. ++|.+.. .|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 35666654 357999999988654 224445543 5664444 566655
No 145
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=42.05 E-value=12 Score=40.04 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhh--cccEEEE--Eecc-----------eeecC-----CCCH-HHHHH
Q 015067 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL-----------HAITL-----PYDT-QQLSK 133 (413)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~i~--IaDl-----------hA~t~-----~~~~-~~i~~ 133 (413)
..++| +|.-+=..+||||....+ .-+.++++ .++|++. |+|+ -.++. ..++ +..+.
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 45555 343333779999977654 22333333 2677653 4555 11221 1244 44456
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 015067 134 ATRETAAIYLACGIDNSK 151 (413)
Q Consensus 134 ~~~~~~a~~lA~GiDp~k 151 (413)
++.....++.++|+.+..
T Consensus 101 ~~~~f~~d~~~Lni~~~~ 118 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYPD 118 (481)
T ss_pred HHHHHHHHHHHcCCCCCc
Confidence 667788889999987543
No 146
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=41.56 E-value=31 Score=37.92 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=24.7
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEecceeec
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAIT 123 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t 123 (413)
++.+..|- -+||.+|+||.+..+.+ +++++.. ++|. .+--|-|.+-
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 35555553 45799999999876522 4444443 5654 4446777664
No 147
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.18 E-value=42 Score=37.57 Aligned_cols=76 Identities=22% Similarity=0.261 Sum_probs=48.3
Q ss_pred CCCCCCCceEEEec-CCCCcchhhhHHHH-H-HHHHHHhhc--ccEEEEEecceeecCCC---------CH-HHHHHHHH
Q 015067 72 ASSSSVKKRIVSGV-QPTGSIHLGNYLGA-I-KNWIALQNS--YETLFFIVDLHAITLPY---------DT-QQLSKATR 136 (413)
Q Consensus 72 ~~~~~~~~~i~tGi-~PTG~lHLGnylg~-i-~~~~~lQ~~--~~~~i~IaDlhA~t~~~---------~~-~~i~~~~~ 136 (413)
+.....+++|++-| -|||.+|+||...- | .-..++|.. ++|+=-+ .|-||=.|. +| .-..+|+.
T Consensus 52 ~~d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~ 130 (876)
T KOG0435|consen 52 DSDKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIA 130 (876)
T ss_pred ccccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHH
Confidence 33344556999988 59999999994321 2 334556664 5665333 366664331 22 45667888
Q ss_pred HHHHHHHHcCCC
Q 015067 137 ETAAIYLACGID 148 (413)
Q Consensus 137 ~~~a~~lA~GiD 148 (413)
.+...+...|+.
T Consensus 131 ~Mk~Ql~~lg~~ 142 (876)
T KOG0435|consen 131 KMKQQLKSLGIS 142 (876)
T ss_pred HHHHHHHHcCcc
Confidence 888888888864
No 148
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=39.80 E-value=1.1e+02 Score=32.35 Aligned_cols=72 Identities=25% Similarity=0.226 Sum_probs=42.5
Q ss_pred hhhhHHHHHhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 015067 196 LTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 274 (413)
Q Consensus 196 l~YPvLQAADIl~~~adlVpvG~DQ-~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg 274 (413)
-+=..-|+..+|--.-|+.-+|.|- .+|+|-- ||+..- .+|+. +-+...+.. -.... +|
T Consensus 227 HiECsam~~~~lg~~~Dih~GG~DLifpHhene--iaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G 286 (411)
T TIGR03447 227 HIECSAIATNRLGAGFDIQGGGSDLIFPHHEFS--AAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG 286 (411)
T ss_pred HHHHHHHHHHHcCCceecccCcccccccchHhH--HHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC
Confidence 3445677777777778999999995 4677654 443321 13320 112233332 22333 56
Q ss_pred CCccccCCCCCCceeec
Q 015067 275 LSKMSKSAPSDQSRINL 291 (413)
Q Consensus 275 ~~KMSKS~p~~~s~I~L 291 (413)
+|||||. +|.|.+
T Consensus 287 -~KMSKSl---GN~i~~ 299 (411)
T TIGR03447 287 -EKMSKSL---GNLVFV 299 (411)
T ss_pred -CCccCcC---CCCCCH
Confidence 7999997 577776
No 149
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=38.66 E-value=30 Score=37.69 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=27.9
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEecce
Q 015067 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 120 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 120 (413)
.-|++--|+|.+|+||.-+++ .-+.++.+. ++| .+.|.||=
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 347888899999999987665 334444443 554 47777753
No 150
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=38.01 E-value=19 Score=42.25 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=28.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEE-Eecceeec
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFF-IVDLHAIT 123 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~-IaDlhA~t 123 (413)
++.|+.|. -+||.+|+||.++.. .-+.+++.. ++|.+. -.|-|.+-
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp 100 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIA 100 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchH
Confidence 35666654 357999999988654 225555554 566444 45666553
No 151
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=37.97 E-value=24 Score=42.12 Aligned_cols=59 Identities=31% Similarity=0.365 Sum_probs=0.0
Q ss_pred cceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 211 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 211 adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
+|+.+=|.||...--.+==+..-.- +| ..| ..++.. ..+..- +| +|||||. +|.|
T Consensus 674 aD~i~eG~Dq~rgWf~s~l~~s~~l--~~---------------~~PfK~VlvH--G~Vld~-dG-~KMSKSl---GNvI 729 (1205)
T PTZ00427 674 ADFIAEGLDQTRGWFYTLLVISTLL--FD---------------KAPFKNLICN--GLVLAS-DG-KKMSKRL---KNYP 729 (1205)
T ss_pred ceEEEEecchhccHHHHHHHHHHHh--cC---------------CCCcceeEEc--cEEEcC-CC-CCcccCC---CCCC
Q ss_pred ecCC
Q 015067 290 NLLD 293 (413)
Q Consensus 290 ~L~D 293 (413)
...+
T Consensus 730 DP~e 733 (1205)
T PTZ00427 730 DPLY 733 (1205)
T ss_pred CHHH
No 152
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.63 E-value=33 Score=37.77 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=27.7
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeccee
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 121 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlhA 121 (413)
||.=-|||.||+||.-+++ .-+.++-+. |+| -+.|.||=.
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHH
Confidence 7889999999999987665 333343332 665 467777743
No 153
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=37.22 E-value=13 Score=41.50 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=20.7
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 293 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D 293 (413)
++.|..++.. ..+.. +| +|||||. +|.|+..|
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~d 342 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWART 342 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHHH
Confidence 5667666654 24433 56 6999997 57877543
No 154
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=37.18 E-value=20 Score=41.26 Aligned_cols=44 Identities=32% Similarity=0.348 Sum_probs=26.1
Q ss_pred ceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceee
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI 122 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~ 122 (413)
+.+.+|. -+||.+|+||.+... .-+.+++.. +++. +.-.|-|.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444432 357999999988654 224444443 5654 444677766
No 155
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=37.15 E-value=44 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=26.1
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHH
Q 015067 319 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 358 (413)
Q Consensus 319 ~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~La 358 (413)
.|..+..++..+ -.+.+.+||.++|..+...+++.+|+
T Consensus 17 TRI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 17 TRIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp SS-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455566676666 36899999999999999999888875
No 156
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=35.45 E-value=44 Score=34.17 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=22.3
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEecce
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 120 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 120 (413)
|+.-=|||.+|+||.-.++ .-..++-+. ++| ...|.||=
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWG 70 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTS
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCC
Confidence 7888999999999977654 223334333 454 46667763
No 157
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=34.10 E-value=1.1e+02 Score=33.10 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHhhhccccceeccccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccc
Q 015067 201 LMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 279 (413)
Q Consensus 201 LQAADIl~~~adlVpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMS 279 (413)
-|+...|--.-|+.-+|.|-. ||+|--+-.+.-. .|. +.+...+.. .++ -+ +| +|||
T Consensus 224 am~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~---~g~--------------~~~~~W~H~--g~l-~~-~g-~KMS 281 (481)
T PRK14534 224 AMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECY---LNK--------------KWCDMFVHG--EFL-IM-EY-EKMS 281 (481)
T ss_pred HHHHHHcCCcceEEecccccCCCcchhHHHHHhhh---cCC--------------CcceEEEEe--cEE-Ee-cC-ceec
Confidence 455555555679999999965 6777644333332 231 223333332 122 23 55 6999
Q ss_pred cCCCCCCceeecC
Q 015067 280 KSAPSDQSRINLL 292 (413)
Q Consensus 280 KS~p~~~s~I~L~ 292 (413)
||. +|.|.+.
T Consensus 282 KSl---GN~i~l~ 291 (481)
T PRK14534 282 KSN---NNFITIK 291 (481)
T ss_pred ccC---CCcccHH
Confidence 997 5788773
No 158
>PLN02381 valyl-tRNA synthetase
Probab=34.09 E-value=26 Score=41.29 Aligned_cols=45 Identities=31% Similarity=0.397 Sum_probs=27.4
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~ 122 (413)
++.|.+|. -+||.+|+||.+... .-+.+++.. ++|.+.. -|-|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 35666664 357999999988654 224445543 5665444 566655
No 159
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=33.19 E-value=1.4e+02 Score=31.28 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=45.4
Q ss_pred hhhhhhHHHHHhhhccccceeccccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 015067 194 ALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 272 (413)
Q Consensus 194 g~l~YPvLQAADIl~~~adlVpvG~DQ-~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~ 272 (413)
|--+=..-|+..+|--.-|+--+|.|- -+|+|-. +|+..- .+|. -+-+...+.. -+...
T Consensus 198 GWHiECsam~~~~lg~~~DIH~GG~DL~FPHHene--iaq~~a-~~g~-------------~~~~~~w~H~---g~l~~- 257 (384)
T PRK12418 198 GWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFS--AAHAEA-ATGE-------------RRFARHYVHA---GMIGL- 257 (384)
T ss_pred hhHHHHHHHHHHHcCCCcccccCccccccchhHhH--HHHHHH-hcCC-------------CCcceEEEEC---CEECC-
Confidence 334445778888888789999999996 4677654 444321 2332 0112334433 22333
Q ss_pred CCCCccccCCCCCCceeecC
Q 015067 273 DGLSKMSKSAPSDQSRINLL 292 (413)
Q Consensus 273 dg~~KMSKS~p~~~s~I~L~ 292 (413)
+| +|||||. +|.|.+.
T Consensus 258 ~G-~KMSKSl---GN~i~~~ 273 (384)
T PRK12418 258 DG-EKMSKSR---GNLVFVS 273 (384)
T ss_pred CC-CcccCcC---CCcCCHH
Confidence 56 7999997 5777764
No 160
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=32.98 E-value=27 Score=39.96 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=27.7
Q ss_pred CceEEEec-CCCCcchhhhHHHHHH--HHHHHhhc--ccEEEE-Eecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQNS--YETLFF-IVDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~-IaDlhA~ 122 (413)
++.++.|. -|||.+|+||.+..+. -+.++|.. ++|++. --|-|.+
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 46777777 2349999999886542 24455554 555433 3466655
No 161
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=31.93 E-value=17 Score=37.74 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=17.5
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeec
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 291 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L 291 (413)
++.|..++.. ..+. + +| +|||||. ++.|+.
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 5677777654 2333 4 66 6999997 578865
No 162
>PLN02413 choline-phosphate cytidylyltransferase
Probab=31.05 E-value=97 Score=31.21 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceEEEecCCCC---cchhhhHHHHHHHHH
Q 015067 68 TAPVASSSSVKKRIVSGVQPTG---SIHLGNYLGAIKNWI 104 (413)
Q Consensus 68 ~~~~~~~~~~~~~i~tGi~PTG---~lHLGnylg~i~~~~ 104 (413)
.++.++...++.+||+- | .+|.||. -.+++..
T Consensus 17 ~~~~~~~~~r~~rVyvd----G~FDLfH~GHi-r~L~qAK 51 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD----GIYDLFHFGHA-RSLEQAK 51 (294)
T ss_pred CCCCCCCCCCceEEEEe----CchhhCCHHHH-HHHHHHH
Confidence 44445555677888864 5 3999996 3344443
No 163
>PHA01929 putative scaffolding protein
Probab=30.95 E-value=3.3e+02 Score=27.19 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=35.3
Q ss_pred CCCCccchHHHHHHhcCCCCHHHHHHHHhc-CCcc--------hHHHHHHHHHHHhhchHHHHHH
Q 015067 318 LERPECNNLLSIYQLISGKTKGEVAEECQN-MNWG--------TFKPLLTDALIEHLHPIQVRYE 373 (413)
Q Consensus 318 ~~rpev~~ll~i~~~~~~~~~eel~~~~~~-~~~~--------dlK~~Lae~I~~~L~pirer~~ 373 (413)
.++|.+..-+.|+..|++.+--++++.|++ +.++ -||+.|.+.=-.++.-+-+.|-
T Consensus 116 ~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~DprfIDe~yL~E~LGe~~A~~~i~vA~~~l 180 (306)
T PHA01929 116 EGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRDPRFIDTHYLKEVLGEAQAQHVINVAKGVL 180 (306)
T ss_pred cCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccCchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578888999999999987776777777762 3333 3555555544444444444433
No 164
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=30.45 E-value=30 Score=40.04 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=41.8
Q ss_pred ceEEEec-CCCCcchhhhHHHHHH--HHHHHhhc--ccEE-EEEecceeecC-------------CCCHHHHHHHHH---
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAIK--NWIALQNS--YETL-FFIVDLHAITL-------------PYDTQQLSKATR--- 136 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~-i~IaDlhA~t~-------------~~~~~~i~~~~~--- 136 (413)
+.+.+|. -++|.+|+||.+..+. -+.++|.. +++. ++--|-|.+-. ..+++++++.++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4444444 2579999999987652 25555554 5553 44456665531 114554444433
Q ss_pred -----HHHHHHHHcCC--CCCC
Q 015067 137 -----ETAAIYLACGI--DNSK 151 (413)
Q Consensus 137 -----~~~a~~lA~Gi--Dp~k 151 (413)
.+..++..+|+ |-++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 44556778898 6555
No 165
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=29.29 E-value=1.5e+02 Score=27.42 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=30.0
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeccee-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA-~t--~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
|+| +|+||.-. +... ++..-+++|.|+.... -+ ++-+.++-.+.++... ...|+|.++
T Consensus 8 F~P---~H~GHl~~-i~~a--~~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~---~~~~~~~~r 68 (181)
T cd02168 8 FQP---FHNGHLAV-VLIA--LEKAKKVIILIGSARTARNIKNPWTSEEREVMIEAAL---SDAGADLAR 68 (181)
T ss_pred cCC---CCHHHHHH-HHHH--HHHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHH---hccCCCcce
Confidence 566 99999754 3333 2232356776754421 12 2334444444343332 345888877
No 166
>PRK10404 hypothetical protein; Provisional
Probab=28.83 E-value=2.2e+02 Score=24.05 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHhhchHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015067 351 GTFKPLLTDALIEHLHPIQVRYEEIMSDS-AYLDKVLADGAAKAADIADATLNNVYQ 406 (413)
Q Consensus 351 ~dlK~~Lae~I~~~L~pirer~~~~~~d~-~~l~~iL~~Ga~kAr~iA~~tl~~v~~ 406 (413)
.++.+..++.-.+.++.+|+|.+..+++- +.+.+.-....+++++.++.|=+-|++
T Consensus 22 e~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 22 EEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556666677777777666543 355666666677888888888877775
No 167
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=28.65 E-value=40 Score=34.02 Aligned_cols=67 Identities=25% Similarity=0.222 Sum_probs=45.5
Q ss_pred hhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC
Q 015067 194 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD 273 (413)
Q Consensus 194 g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~d 273 (413)
|..+|-+=-+.|=...+.++|.=|.|-...-..-.-|.+.|+ ++.|...+.+ .+.+- +
T Consensus 183 g~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg------------------~~~P~~~H~p---l~l~~-~ 240 (314)
T PF00749_consen 183 GYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG------------------WPPPPYAHLP---LILNE-D 240 (314)
T ss_dssp SEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT------------------SSS-EEEEEE---EEEET-T
T ss_pred cCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC------------------CCCcceEeee---eeecC-C
Confidence 455555555555566789999999999887777777777655 4557666653 66665 5
Q ss_pred CCCccccCCC
Q 015067 274 GLSKMSKSAP 283 (413)
Q Consensus 274 g~~KMSKS~p 283 (413)
| +|+||++.
T Consensus 241 g-~kLSKR~~ 249 (314)
T PF00749_consen 241 G-KKLSKRKG 249 (314)
T ss_dssp S-SBSSTTCS
T ss_pred C-cEechhhc
Confidence 6 79999974
No 168
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=27.79 E-value=54 Score=35.80 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=26.6
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEecce
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 120 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 120 (413)
|+.-=|||.+|+||.-+++ .-+.++-+. ++| ...|.||=
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch
Confidence 7888999999999977654 234444343 555 46677764
No 169
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=37 Score=39.39 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred ccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 015067 267 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 302 (413)
Q Consensus 267 ~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI 302 (413)
++..- +| +|||||. +|.|. |.+|-+|.
T Consensus 594 fvlDe-~G-rKMSKSl---GN~v~----P~~V~~~y 620 (933)
T COG0060 594 FVLDE-KG-RKMSKSL---GNVVD----PQDVIDKY 620 (933)
T ss_pred cEECC-CC-CCccccC---CCcCC----HHHHHHhh
Confidence 66664 56 7999997 56664 66666653
No 170
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=27.52 E-value=70 Score=31.89 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=42.7
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
++|..-.|..-.|.+++-|++++.++ | |..++.. +.+.. .|| ..||+-+ .
T Consensus 141 ~Pd~~~FG~kd~gq~~~Lk~~~~dl~------------------~--~v~ii~~--~~vr~-~dG-laiSSRN------~ 190 (277)
T cd00560 141 QPDRAYFGEKDAQQLAVIRRMVRDLN------------------L--PVEIVGC--PTVRE-EDG-LALSSRN------V 190 (277)
T ss_pred CCCeEEECCCccccHHHHHHHHHHcC------------------C--eEEEEcC--Cceec-CCC-ceEeCCC------C
Confidence 68988888888899999998888755 2 2223322 11111 256 5898774 5
Q ss_pred ecCCCHHHHHHHhhhccC
Q 015067 290 NLLDPKDVIANKIKRCKT 307 (413)
Q Consensus 290 ~L~D~pe~I~~KI~kA~T 307 (413)
+|+....+....|-++.+
T Consensus 191 ~Ls~~~r~~A~~l~~~L~ 208 (277)
T cd00560 191 YLSAEERKEALALYRALK 208 (277)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 666666666666655543
No 171
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=27.51 E-value=32 Score=39.96 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=21.4
Q ss_pred ceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEE
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLF 114 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i 114 (413)
+.|..|. -|||.+|+||.++.. .-+.++|.. ++|.+
T Consensus 27 f~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 27 FFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred eEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 4444443 246999999988654 224456554 55544
No 172
>PLN02286 arginine-tRNA ligase
Probab=26.31 E-value=50 Score=36.25 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.2
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEecce
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 120 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 120 (413)
|+.-=|||.+|+||.-+++ .-+.++-+. ++| ...|.||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 7899999999999976554 223333333 554 56777763
No 173
>PLN02959 aminoacyl-tRNA ligase
Probab=24.36 E-value=43 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=17.7
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEE
Q 015067 87 PTGSIHLGNYLGAIKN--WIALQNS--YETL 113 (413)
Q Consensus 87 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~ 113 (413)
++|.+||||.+....+ ..++|.. ++|.
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 4699999999876522 4456664 4443
No 174
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.26 E-value=82 Score=32.36 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=22.3
Q ss_pred CCcchhhhHHHHHHHHHHHhhcccEEEEEecce-eecCC
Q 015067 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH-AITLP 125 (413)
Q Consensus 88 TG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlh-A~t~~ 125 (413)
.|..||||| |+.++- .+.|+|-|+|.- +.+.+
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFDe~~~g~ 94 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFDEGHLGQ 94 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccchhhccc
Confidence 378999998 654332 377999999974 45444
No 175
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=23.91 E-value=51 Score=38.44 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=26.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~ 122 (413)
++.+..|. -++|.+|+||.+..+.+ +++++.. +++.+ .-=|-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35555554 25699999999876522 4445553 55533 33455555
No 176
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.49 E-value=1.1e+02 Score=34.79 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHH
Q 015067 354 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 390 (413)
Q Consensus 354 K~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga 390 (413)
-+.++..++..+.--++.|+.- ...++|+-|-
T Consensus 788 Drvf~nemN~~i~~t~~aye~~-----~fk~aLK~Gf 819 (1080)
T KOG0437|consen 788 DRVFENEMNALIAKTERAYEDT-----LFKDALKYGF 819 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHhhh
Confidence 4556666777777666666543 3567777664
No 177
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=23.36 E-value=52 Score=38.43 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=26.7
Q ss_pred CceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--ccEEEE-Eecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETLFF-IVDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i-~~-~~~lQ~~--~~~~i~-IaDlhA~ 122 (413)
++.++.|. -+||.+|+||.+... +- +.+++.. ++|.+. --|-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 46666665 357999999988654 22 3444443 555433 3455555
No 178
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=23.08 E-value=2.5e+02 Score=24.94 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015067 351 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 403 (413)
Q Consensus 351 ~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~ 403 (413)
.++|..+-++|.+.+.|.=. . ..+.+...+++.+-....+++|+++|++
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~---~-~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS---Q-AKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc---c-CCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46899999999998887422 2 2456778888888888999999988864
No 179
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=22.73 E-value=78 Score=31.60 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=44.0
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
.++|+.-.|..-.|.+.+-+++++.+| | |..++.- +.+..- || ..||+-+
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~------------------~--~v~ii~~--p~vre~-dG-laiSSRN------ 188 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLN------------------L--PVEIVGV--PTVREA-DG-LALSSRN------ 188 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcC------------------C--ceEEEec--CceECC-CC-CEeecCc------
Confidence 478998888888899999999988866 2 2222211 122222 55 5888763
Q ss_pred eecCCCHHHHHHHhhhccC
Q 015067 289 INLLDPKDVIANKIKRCKT 307 (413)
Q Consensus 289 I~L~D~pe~I~~KI~kA~T 307 (413)
.||+....+....|-++.+
T Consensus 189 ~~Ls~~~r~~A~~l~~~L~ 207 (281)
T PRK00380 189 VYLSPEERKAAPALYRALR 207 (281)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5677666666666655554
No 180
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=21.51 E-value=51 Score=28.87 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=30.5
Q ss_pred HHHHhhchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015067 360 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 408 (413)
Q Consensus 360 ~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~v~~a~ 408 (413)
.+.+.|+|+.+||.+++.+..-.+- +.-..-|+-++.+++.|-+++
T Consensus 10 ~vq~RL~Pflery~~iL~~~~~~e~---~~~~~~re~~QRi~d~VsEal 55 (120)
T PF12057_consen 10 RVQERLQPFLERYHEILQEDPSFEY---ENNTQEREEDQRIFDLVSEAL 55 (120)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCCCC---CCCccchhhHhHHHHHHHHHH
Confidence 4578899999999999875422210 122234677788888777765
No 181
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.50 E-value=1.2e+02 Score=33.62 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=49.1
Q ss_pred ceEEEec--CCCCcchhhhHHHHHHHHHHHhhccc-EEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 79 ~~i~tGi--~PTG~lHLGnylg~i~~~~~lQ~~~~-~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
=.|+|-| +|-|.+||||.-....++ -+-..++ +-++-=|. |+|. +.++.-..+.++++ | .|++|-|
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNF-gyAk~~~G~cyLRfDD---TNPEkEee~yf~sI~e~V~-W--LG~~P~kvTy 319 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNF-GYAKAHGGVCYLRFDD---TNPEKEEEEYFESIKEMVA-W--LGFEPYKVTY 319 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeech-hhhhhhCCeEEEecCC---CCcchhhHHHHHHHHHHHH-H--hCCCceeeec
Confidence 3677777 456999999974322333 1223332 33333333 3443 23333444445543 2 5999988
Q ss_pred -cchh-cchhHHHH-------HhccccHHHHhhhhhHH
Q 015067 152 -SHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 180 (413)
Q Consensus 152 -S~i~-~~~el~w~-------L~~~~~i~~l~r~~~~k 180 (413)
|+.+ +-.+++-. +.|..+-.++.+.-.++
T Consensus 320 sSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 320 SSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred chhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 5543 33333221 34777777776444443
No 182
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=21.47 E-value=3.8e+02 Score=30.03 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=39.7
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhh---cccEEEEE-ecce--eecC-----CCC-H-HHHHHHHHHHHHH
Q 015067 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN---SYETLFFI-VDLH--AITL-----PYD-T-QQLSKATRETAAI 141 (413)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~---~~~~~i~I-aDlh--A~t~-----~~~-~-~~i~~~~~~~~a~ 141 (413)
.+++| +|--+=+.+||||.-..+ .-+.++.+ .++|+++. .|.| .++. ..+ + +..+.++.....+
T Consensus 60 ~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d 139 (651)
T PTZ00399 60 QVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFED 139 (651)
T ss_pred eeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 34443 443333889999965433 22333333 36776554 2222 1111 124 4 4445666788888
Q ss_pred HHHcCCCCC
Q 015067 142 YLACGIDNS 150 (413)
Q Consensus 142 ~lA~GiDp~ 150 (413)
+.++||.+.
T Consensus 140 ~~~Lni~~p 148 (651)
T PTZ00399 140 MKALNVRPP 148 (651)
T ss_pred HHHcCCCCC
Confidence 999998654
Done!