Query 015067
Match_columns 413
No_of_seqs 179 out of 1338
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 1.1E-93 3.9E-98 717.9 31.9 322 78-412 15-344 (346)
2 3prh_A Tryptophanyl-tRNA synth 100.0 1.1E-93 3.8E-98 726.7 32.1 320 78-412 35-360 (388)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 7.2E-94 2.5E-98 718.7 29.9 325 78-412 6-339 (341)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 7.1E-89 2.4E-93 680.4 31.9 320 79-413 2-327 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 7.1E-89 2.4E-93 685.1 27.1 320 78-411 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 3.5E-87 1.2E-91 666.5 30.6 311 78-410 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 3.6E-85 1.2E-89 655.8 31.6 314 79-411 2-328 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 1.1E-84 3.6E-89 655.5 32.2 320 75-412 19-350 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 1.1E-84 3.9E-89 652.8 28.4 314 77-411 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 9.4E-70 3.2E-74 552.7 19.6 280 77-392 72-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 2.8E-67 9.7E-72 532.3 18.4 274 77-386 69-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 3.6E-65 1.2E-69 516.9 25.7 275 77-385 55-366 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-65 4.5E-70 520.7 19.4 267 78-375 33-361 (375)
14 3tze_A Tryptophanyl-tRNA synth 100.0 3.4E-65 1.2E-69 521.0 20.2 274 77-378 100-395 (406)
15 2j5b_A Tyrosyl-tRNA synthetase 100.0 8E-65 2.7E-69 510.5 20.7 262 77-375 39-331 (348)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 9.5E-67 3.3E-71 537.0 6.9 301 77-405 101-432 (432)
17 2cya_A Tyrosyl-tRNA synthetase 100.0 1.2E-64 4.1E-69 512.0 21.6 262 77-374 34-347 (364)
18 3hzr_A Tryptophanyl-tRNA synth 100.0 2E-64 6.7E-69 512.7 19.5 274 77-378 81-375 (386)
19 3hv0_A Tryptophanyl-tRNA synth 100.0 7.5E-64 2.6E-68 509.7 19.8 281 77-386 73-378 (393)
20 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.2E-63 1.4E-67 534.5 24.9 285 77-387 39-360 (690)
21 3i05_A Tryptophanyl-tRNA synth 100.0 4.8E-64 1.6E-68 511.5 13.2 287 77-393 77-392 (395)
22 3foc_A Tryptophanyl-tRNA synth 100.0 4.2E-62 1.4E-66 502.5 16.7 279 77-385 90-444 (451)
23 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.8E-60 6.1E-65 474.5 22.2 258 77-374 31-321 (323)
24 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.7E-59 5.7E-64 466.0 21.7 253 77-374 27-308 (314)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 1.4E-60 4.7E-65 491.0 14.4 279 77-385 107-413 (437)
26 1r6t_A Tryptophanyl-tRNA synth 100.0 5.4E-60 1.8E-64 492.1 14.3 274 77-378 154-455 (477)
27 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.4E-58 4.9E-63 472.0 21.0 273 77-390 38-355 (394)
28 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.9E-58 6.4E-63 475.3 18.2 280 77-404 36-345 (432)
29 1n3l_A Tyrosyl-tRNA synthetase 100.0 1E-57 3.5E-62 462.6 20.7 259 77-373 34-329 (372)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 9E-58 3.1E-62 454.9 18.2 257 77-374 32-320 (322)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 3.8E-55 1.3E-59 441.2 16.7 255 77-374 45-339 (356)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 2.9E-54 9.8E-59 443.5 19.4 257 77-375 31-318 (432)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 8.8E-53 3E-57 428.5 21.1 269 77-375 63-379 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 5.1E-53 1.7E-57 433.2 17.1 258 77-375 29-316 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3.1E-52 1.1E-56 428.0 21.4 254 77-375 31-317 (420)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.1E-46 7.1E-51 404.5 23.6 258 71-373 375-669 (690)
37 1nzj_A Hypothetical protein YA 98.9 1E-09 3.5E-14 107.9 5.4 170 85-283 12-234 (298)
38 2ja2_A Glutamyl-tRNA synthetas 98.9 7.1E-09 2.4E-13 108.4 10.6 192 85-304 13-286 (498)
39 3afh_A Glutamyl-tRNA synthetas 98.7 3.3E-08 1.1E-12 103.2 8.6 193 79-304 26-284 (488)
40 1j09_A Glutamyl-tRNA synthetas 98.6 3.3E-08 1.1E-12 102.7 5.9 186 86-304 9-272 (468)
41 2cfo_A Glutamyl-tRNA synthetas 98.4 2.3E-06 8E-11 89.3 13.5 188 84-304 7-276 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.4 5.2E-08 1.8E-12 103.8 1.0 193 79-304 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.8 0.00036 1.2E-08 72.6 16.2 67 79-151 14-81 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.7 0.00026 9E-09 73.7 12.5 69 78-151 25-93 (490)
45 2d5b_A Methionyl-tRNA syntheta 97.1 0.0017 5.7E-08 67.2 10.1 74 78-151 3-91 (500)
46 2csx_A Methionyl-tRNA syntheta 97.0 0.0012 4.1E-08 68.4 8.1 73 79-151 6-93 (497)
47 4dlp_A Aminoacyl-tRNA syntheta 97.0 0.0019 6.6E-08 67.6 9.4 73 79-151 26-113 (536)
48 1li5_A Cysrs, cysteinyl-tRNA s 96.7 0.17 5.7E-06 52.2 21.1 71 79-149 23-107 (461)
49 4gri_A Glutamate--tRNA ligase; 96.6 0.046 1.6E-06 57.1 16.5 52 209-283 228-279 (512)
50 3aii_A Glutamyl-tRNA synthetas 96.6 0.0083 2.8E-07 63.3 10.5 65 81-151 97-164 (553)
51 3tqo_A Cysteinyl-tRNA syntheta 96.0 0.15 5.2E-06 52.6 16.0 73 79-151 26-112 (462)
52 1iq0_A Arginyl-tRNA synthetase 95.6 0.0042 1.4E-07 66.1 2.5 40 80-119 107-152 (592)
53 2zue_A Arginyl-tRNA synthetase 93.0 0.085 2.9E-06 56.5 5.3 38 82-119 125-168 (629)
54 3u1f_A Methionyl-tRNA syntheta 90.7 0.54 1.9E-05 48.8 8.1 74 78-151 10-97 (542)
55 3h99_A Methionyl-tRNA syntheta 89.5 0.74 2.5E-05 48.2 8.0 74 78-151 19-106 (560)
56 1irx_A Lysyl-tRNA synthetase; 86.5 0.67 2.3E-05 48.2 5.3 73 79-151 22-124 (523)
57 3kfl_A Methionyl-tRNA syntheta 86.4 1.7 6E-05 45.5 8.5 72 80-151 28-114 (564)
58 1qtq_A GLNRS, protein (glutami 86.3 1.1 3.6E-05 47.3 6.7 67 79-151 27-94 (553)
59 2x1l_A Methionyl-tRNA syntheta 85.7 0.23 8E-06 51.5 1.4 66 86-151 22-100 (524)
60 2hz7_A Glutaminyl-tRNA synthet 85.0 1 3.6E-05 49.7 6.1 63 83-151 71-134 (851)
61 3kfl_A Methionyl-tRNA syntheta 85.0 0.27 9.3E-06 51.7 1.5 57 209-293 293-352 (564)
62 1rqg_A Methionyl-tRNA syntheta 84.5 1.7 5.7E-05 47.2 7.5 74 78-151 3-91 (722)
63 3u1f_A Methionyl-tRNA syntheta 81.9 0.5 1.7E-05 49.1 1.9 58 210-292 278-335 (542)
64 1wkb_A Leucyl-tRNA synthetase; 81.7 0.55 1.9E-05 51.5 2.3 61 209-293 602-663 (810)
65 1wz2_A Leucyl-tRNA synthetase; 79.5 0.74 2.5E-05 51.6 2.4 71 209-303 602-678 (967)
66 1gax_A Valrs, valyl-tRNA synth 78.8 0.62 2.1E-05 51.6 1.5 61 209-293 480-541 (862)
67 3c8z_A Cysteinyl-tRNA syntheta 77.5 0.78 2.7E-05 46.3 1.6 72 80-151 42-127 (414)
68 1ile_A Ilers, isoleucyl-tRNA s 77.3 1 3.5E-05 49.5 2.7 72 209-304 543-620 (821)
69 1ffy_A Isoleucyl-tRNA syntheta 76.1 1.2 4.1E-05 49.7 2.8 59 208-293 546-608 (917)
70 3fnr_A Arginyl-tRNA synthetase 75.9 0.4 1.4E-05 49.5 -1.0 38 82-119 36-79 (464)
71 3h99_A Methionyl-tRNA syntheta 74.6 1 3.5E-05 47.1 1.7 43 254-304 327-374 (560)
72 2x1l_A Methionyl-tRNA syntheta 74.0 5.2 0.00018 41.2 6.8 60 209-293 264-323 (524)
73 3sp1_A Cysteinyl-tRNA syntheta 70.4 12 0.0004 38.9 8.4 74 78-151 42-139 (501)
74 4arc_A Leucine--tRNA ligase; l 69.8 7.9 0.00027 43.0 7.4 73 78-150 54-140 (880)
75 1gax_A Valrs, valyl-tRNA synth 68.0 8.4 0.00029 42.6 7.1 73 78-150 35-137 (862)
76 3c8z_A Cysteinyl-tRNA syntheta 66.1 14 0.00048 37.0 7.8 31 202-232 236-267 (414)
77 3sp1_A Cysteinyl-tRNA syntheta 62.2 2.9 9.8E-05 43.6 1.9 33 200-232 243-276 (501)
78 2v0c_A Aminoacyl-tRNA syntheta 61.5 4 0.00014 45.3 3.0 24 209-232 530-554 (878)
79 1irx_A Lysyl-tRNA synthetase; 58.2 3.5 0.00012 42.8 1.7 71 209-304 229-308 (523)
80 4arc_A Leucine--tRNA ligase; l 57.9 6.3 0.00022 43.7 3.8 26 209-234 542-568 (880)
81 2v0c_A Aminoacyl-tRNA syntheta 55.5 14 0.00047 41.0 6.0 73 78-150 34-120 (878)
82 1wkb_A Leucyl-tRNA synthetase; 53.1 14 0.00049 40.2 5.6 44 79-122 36-85 (810)
83 3foc_A Tryptophanyl-tRNA synth 49.9 3.9 0.00013 42.0 0.4 14 213-226 236-249 (451)
84 3oqi_A YVMC, putative uncharac 48.0 47 0.0016 31.4 7.5 82 78-161 29-127 (257)
85 1f7u_A Arginyl-tRNA synthetase 41.3 17 0.00058 38.5 3.7 38 82-119 149-192 (607)
86 1ile_A Ilers, isoleucyl-tRNA s 40.9 12 0.00042 40.9 2.6 45 78-122 39-89 (821)
87 1ffy_A Isoleucyl-tRNA syntheta 37.5 13 0.00043 41.5 2.0 71 78-148 49-145 (917)
88 3fnr_A Arginyl-tRNA synthetase 37.0 22 0.00075 36.4 3.6 61 211-293 235-298 (464)
89 3cov_A Pantothenate synthetase 36.7 49 0.0017 32.0 5.8 67 210-306 152-218 (301)
90 1rqg_A Methionyl-tRNA syntheta 35.7 7 0.00024 42.3 -0.3 44 254-305 326-374 (722)
91 1wz2_A Leucyl-tRNA synthetase; 35.3 13 0.00045 41.5 1.8 45 78-122 35-85 (967)
92 3oqv_A ALBC; rossman fold, cyc 27.1 97 0.0033 29.1 5.9 83 77-161 28-129 (247)
93 1f7u_A Arginyl-tRNA synthetase 26.6 22 0.00076 37.6 1.6 26 210-235 363-390 (607)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.1e-93 Score=717.86 Aligned_cols=322 Identities=47% Similarity=0.759 Sum_probs=307.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
+++||||++|||.+|||||+|++++|++||+.++++|+||||||+|++.+++.+++++++++++|+|||+||+|
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~q 94 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQ 94 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEG
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 57999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|+|++|+|.|++++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 95 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia 173 (346)
T 3n9i_A 95 SHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIA 173 (346)
T ss_dssp GGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHH
Confidence 889999999999999999999999999999887654 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||++|| .+|++|++++++++++||||+||++|||||+++++|+|+|+|+|++|++|||+|+||+.+
T Consensus 174 ~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 174 SRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 99999998 569999999987668999998898899999987779999999999999999999999986
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHH
Q 015067 312 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 389 (413)
Q Consensus 312 --~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~G 389 (413)
.+.++++++|+++|+|.||+.|++++++|++++|.+.++++||+.|+++|+++|+|||+||+++++|++||++||++|
T Consensus 242 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 242 PALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 356788899999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Q 015067 390 AAKAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 390 a~kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
++|||++|++||++||++|||.+
T Consensus 322 ~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 322 AAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999974
No 2
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-93 Score=726.69 Aligned_cols=320 Identities=48% Similarity=0.757 Sum_probs=299.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
+.+||||++|||.+|||||+|++++|++||+.++++||||||||+|++.+++.+++++++++++|+||||||+|
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|+||+|+|+|.++++||+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia 192 (388)
T 3prh_A 115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA 192 (388)
T ss_dssp GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999876553 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||+.|| .+|..|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 193 ~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~ 260 (388)
T 3prh_A 193 ERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEG 260 (388)
T ss_dssp HHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSC
T ss_pred HHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCC
Confidence 99999998 579999999987668999998888999999998889999999999999999999999998
Q ss_pred CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHHH
Q 015067 312 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAA 391 (413)
Q Consensus 312 ~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~ 391 (413)
.++++++++|+++|+|+||+++++++++|++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++||++|++
T Consensus 261 ~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~ 339 (388)
T 3prh_A 261 IVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAE 339 (388)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred cccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHH
Confidence 89999999999999999999999999999999999779999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 015067 392 KAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 392 kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
|||++|++||++||++|||.+
T Consensus 340 kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 340 RANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999964
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=7.2e-94 Score=718.75 Aligned_cols=325 Identities=44% Similarity=0.733 Sum_probs=308.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
+++||||++|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+||||||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|+||+|+|+|++++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 899999999999999999999999999999987764 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||++||.. .++|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 1368999999986557999998888899999987789999999999999999999999987
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhc-CCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHH
Q 015067 312 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 388 (413)
Q Consensus 312 --~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~-~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~ 388 (413)
.+.++++++|+++|+|.||++|+++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++++|++||++||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466788999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 015067 389 GAAKAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 389 Ga~kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
|++|||++|++||++||++|||.+
T Consensus 316 G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 316 GAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999975
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=7.1e-89 Score=680.37 Aligned_cols=320 Identities=48% Similarity=0.771 Sum_probs=302.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------c
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------S 152 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------S 152 (413)
++||||++|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+| |
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 5899999999999999999999999999999999999999999999889999999999999999999999998 8
Q ss_pred chhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHHH
Q 015067 153 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 232 (413)
Q Consensus 153 ~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA~ 232 (413)
++++|.|+.|+++|++++++|+||++||++.++. +++++|+|+||+||||||++|++|+||||+||+||+|++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~~--~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGK--EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTTC--SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhcc--CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 8899999999999999999999999999887552 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCC
Q 015067 233 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312 (413)
Q Consensus 233 r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~ 312 (413)
|||+.|| ++|++|++++++..++||||+||++|||||+++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 9999998 6799999999865689999977678999999742344999999999999999999999988
Q ss_pred cccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHHHH
Q 015067 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 392 (413)
Q Consensus 313 i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~k 392 (413)
+.|++.++|+++++|.||++|+++++++|+++|.++++++||+.||++|+++|+|||+||+++++|++ |++||++|++|
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~ 306 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEK 306 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHH
Confidence 88998888999999999999999999999999998899999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 015067 393 AADIADATLNNVYQAMGFLRR 413 (413)
Q Consensus 393 Ar~iA~~tl~~v~~a~Gl~~~ 413 (413)
||++|++||++||++|||.+|
T Consensus 307 a~~~a~~~~~~v~~~~g~~~~ 327 (328)
T 1i6k_A 307 ANRVASEMVRKMEQAMGLGRR 327 (328)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999743
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=7.1e-89 Score=685.14 Aligned_cols=320 Identities=36% Similarity=0.555 Sum_probs=301.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
+++|||||+|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|+||||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-----CCCccchhhhhhHHHHHhhhccccceeccccchHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 226 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-----~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleL 226 (413)
|++++|+|+.|+|+|++++++|+|+++||++.++.+ .+++++|+|+||+|||||||+|++|+||||+||+||+||
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 888999999999999999999999999998775542 367899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhcc
Q 015067 227 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306 (413)
Q Consensus 227 aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~ 306 (413)
+||||+|||+.|| ++|++|++++++..++||||+||++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 9999999999998 6799999999865589999977778999999865559999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhcCCCCHH---------HHHHHHhcCCcchHHHHHHHHHHHhhchHHHHHHHHhc
Q 015067 307 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 377 (413)
Q Consensus 307 Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~e---------el~~~~~~~~~~dlK~~Lae~I~~~L~pirer~~~~~~ 377 (413)
||+.+++.+++.++|+++++|.||++|++++++ +|+++|.+++|++||+.||++|+++|+|||+||+++ +
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~ 310 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-S 310 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999988999988899999999999999999999 999999989999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 378 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 378 d~~~l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|++ |++||++|++|||++|++||++||++|||.
T Consensus 311 d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 311 REQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888 999999999999999999999999999995
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=3.5e-87 Score=666.51 Aligned_cols=311 Identities=34% Similarity=0.601 Sum_probs=292.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC------
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK------ 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k------ 151 (413)
..+|||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 35899999999999999999999999999999999999999999999889999999999999999999999998
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHHHHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 231 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaRdiA 231 (413)
|++++|.|+.|+++|.+++++|+|+++||++..+. +++++|+|+||+|||||||+|++|+||||.||+||+|++||||
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876543 5799999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCC
Q 015067 232 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311 (413)
Q Consensus 232 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~ 311 (413)
+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 99999998 67999999986555899999 67 79999986 6899999999999999999999987
Q ss_pred CcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHH
Q 015067 312 GLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 388 (413)
Q Consensus 312 ~i~~~~~~rpev~~ll~i~~~~~-~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~ 388 (413)
.. .+++|+++++++||++|+ ++++++++++|. ++++++||+.||++|+++|+|||+||+++++|++||++||++
T Consensus 224 ~~---~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~ 300 (322)
T 3tzl_A 224 LE---DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300 (322)
T ss_dssp TT---SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cc---CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHH
Confidence 52 357899999999999995 557999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 015067 389 GAAKAADIADATLNNVYQAMGF 410 (413)
Q Consensus 389 Ga~kAr~iA~~tl~~v~~a~Gl 410 (413)
|++|||++|++||++||++|||
T Consensus 301 G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 301 GATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.6e-85 Score=655.82 Aligned_cols=314 Identities=44% Similarity=0.702 Sum_probs=286.6
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc--ccEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
++|||||+|||.+|||||+|+|++|++||+. ++++|+|||+||+|++ .+++.+++++++++++|+|+|+||+|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 5899999999999999999999999999998 8999999999999997 79999999999999999999999998
Q ss_pred ---cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHHHH
Q 015067 152 ---SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 228 (413)
Q Consensus 152 ---S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleLaR 228 (413)
|++++|.|+.|+++|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 8899999999999999999999999999986543 36799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCC
Q 015067 229 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308 (413)
Q Consensus 229 diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~Td 308 (413)
|||+|||+.|| ++|++|+++++.++++|||| +|++|||||++ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFG------------ETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcC------------cccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 99999999998 57999999998766799999 56679999986 5899999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhcCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHH
Q 015067 309 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 385 (413)
Q Consensus 309 ~~~~i~~~~~~rpev~~ll~i~~~~~~~-~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 385 (413)
+.+++.+++ ++|++|++++||++|++. ++++|+++|. +++++++|+.||++|+++|+|+|++|+++++|+++|++|
T Consensus 224 ~~~~~~~~~-~~p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~i 302 (337)
T 2el7_A 224 PQRIRLSDP-GDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDA 302 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CccccccCC-CCCchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHH
Confidence 998888876 459999999999999987 9999999998 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 386 LADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 386 L~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|++|++|||++|++||++||++|||.
T Consensus 303 l~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 303 LLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999985
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.1e-84 Score=655.48 Aligned_cols=320 Identities=30% Similarity=0.430 Sum_probs=296.4
Q ss_pred CCCCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC--
Q 015067 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK-- 151 (413)
Q Consensus 75 ~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k-- 151 (413)
...+++|||||+|||.+|||||+|+|++|++||+.++++|+|||+||+|+ +.+++++++++++++++|+|+|+||+|
T Consensus 19 ~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 98 (351)
T 1yi8_B 19 TPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT 98 (351)
T ss_dssp --CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE
T ss_pred cCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 35678999999999999999999999999999999999999999999998 689999999999999999999999998
Q ss_pred ----cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhccccceeccccchHHHHHH
Q 015067 152 ----SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 226 (413)
Q Consensus 152 ----S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleL 226 (413)
|++++|.|+.|+|+|.++++||+|+++||++..+.+ .+++++|+|+||+||||||++|++|+||||+||+||+++
T Consensus 99 i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l 178 (351)
T 1yi8_B 99 CVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQ 178 (351)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred EEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHH
Confidence 889999999999999999999999999999886553 367999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhcc
Q 015067 227 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306 (413)
Q Consensus 227 aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~ 306 (413)
+||||+|||+.|| ++|++|+++++. .++|||| ||++|||||++ |+|+|+|+|++|++||++|+
T Consensus 179 ~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~ 241 (351)
T 1yi8_B 179 TREIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMY 241 (351)
T ss_dssp HHHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcC
Confidence 9999999999998 579999998863 2799999 78779999986 58999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhcCC--CCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHH
Q 015067 307 TDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYL 382 (413)
Q Consensus 307 Td~~~~i~~~~~~rpev~~ll~i~~~~~~--~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l 382 (413)
||+.+.+.+++ ++|++++++.|+.+|+. +++++|+++|. +++|++||+.||++|+++|+|+|+||+++++|+++|
T Consensus 242 td~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l 320 (351)
T 1yi8_B 242 TDPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAV 320 (351)
T ss_dssp CCTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHH
Confidence 99988777775 66888899999998863 35689999997 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015067 383 DKVLADGAAKAADIADATLNNVYQAMGFLR 412 (413)
Q Consensus 383 ~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~~ 412 (413)
++||++|++|||++|++||++||++|||.+
T Consensus 321 ~~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 321 LRFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999964
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-84 Score=652.78 Aligned_cols=314 Identities=36% Similarity=0.570 Sum_probs=290.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
+.+++|+|++|||.||||||+|++++|++||+. ++++|+||||||+|+ +.||+.+++++++++++|+|||+||+|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 468999999999999999999999999999998 899999999999998 789999999999999999999999998
Q ss_pred ---cchhcchhHHHHHhccccHHHHhhhhhHHH---hHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHH
Q 015067 152 ---SHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 225 (413)
Q Consensus 152 ---S~i~~~~el~w~L~~~~~i~~l~r~~~~k~---~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hle 225 (413)
|++++|.|+.|+++|.++++||+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||+||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 889999999999999999999999999998 4432 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhc
Q 015067 226 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305 (413)
Q Consensus 226 LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA 305 (413)
++||||+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 99999999999998 579999988753 3799999 575 9999985 6899999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhcCC-C-CHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHH
Q 015067 306 KTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 381 (413)
Q Consensus 306 ~Td~~~~i~~~~~~rpev~~ll~i~~~~~~-~-~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 381 (413)
+||+.+.+.+++ ++|++|++++||++|++ . ++++|+++|. ++++++||+.||++|+++|+|||+||+++++|+++
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 309 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHY 309 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 999988888876 89999999999999985 3 5699999998 46888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015067 382 LDKVLADGAAKAADIADATLNNVYQAMGFL 411 (413)
Q Consensus 382 l~~iL~~Ga~kAr~iA~~tl~~v~~a~Gl~ 411 (413)
|++||++|++|||++|++||++||++|||.
T Consensus 310 ~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 310 VDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999985
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.4e-70 Score=552.67 Aligned_cols=280 Identities=20% Similarity=0.279 Sum_probs=240.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHH-HHHHHHhhc--ccEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
++++||||++|||.+|||||+|++ .+| ||+. ++++|+|||+||++++ .+++++++++++++++|+|||+||+|
T Consensus 72 ~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 149 (392)
T 3jxe_A 72 RGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDK 149 (392)
T ss_dssp CCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccc
Confidence 478999999999999999999996 788 8883 6799999999999873 69999999999999999999999999
Q ss_pred ------cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc-ccceeccccchHHHH
Q 015067 152 ------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQHL 224 (413)
Q Consensus 152 ------S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~-~adlVpvG~DQ~~hl 224 (413)
|+++++.++.|.|++.++++++.++.+|+ +++++|+|+||+|||||||+| ++|+||||.||+||+
T Consensus 150 t~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl 221 (392)
T 3jxe_A 150 TFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYW 221 (392)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHH
T ss_pred eEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHH
Confidence 88888999999999999999999887664 578999999999999999999 699999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 015067 225 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304 (413)
Q Consensus 225 eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~k 304 (413)
++|||+|+||| +++|.+++++ +||||+++++|||||++ +|+|+|+|+|++|++|||+
T Consensus 222 ~l~Rdla~r~n------------------~~~p~~l~~~---~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~k 278 (392)
T 3jxe_A 222 RLQRDFAESLG------------------YYKTAALHSK---FVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVWK 278 (392)
T ss_dssp HHHHHHTGGGT------------------SCCCEEEEEC---CCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcC------------------CCCCeeeecc---cccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHHh
Confidence 99999999998 5679888764 99999655579999997 3799999999999999999
Q ss_pred -ccCCCCCCcccCC--CCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHh
Q 015067 305 -CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIM 376 (413)
Q Consensus 305 -A~Td~~~~i~~~~--~~rpev~~ll~i~~~~~---~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~ 376 (413)
|+||+..++++++ +++|+++++++||.+|+ ++++++++++|. +++|++||+.|+++|+++|+|||+||++++
T Consensus 279 ~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~ 358 (392)
T 3jxe_A 279 FTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE 358 (392)
T ss_dssp CC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776654 68999999999999885 457899999997 489999999999999999999999999998
Q ss_pred cCHHHHHHHHHHHHHH
Q 015067 377 SDSAYLDKVLADGAAK 392 (413)
Q Consensus 377 ~d~~~l~~iL~~Ga~k 392 (413)
++|+++|..|+.+
T Consensus 359 ---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 359 ---KLVEKFKYTGKLA 371 (392)
T ss_dssp ---TSHHHHHTTSHHH
T ss_pred ---HHHHHHHHcCccc
Confidence 5899999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.8e-67 Score=532.29 Aligned_cols=274 Identities=27% Similarity=0.363 Sum_probs=237.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCC--
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSK-- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GiDp~k-- 151 (413)
++++||||++|||.+|||||++++ +|+.+|+. ++++|+||||||+|++. +++.++.++++++++|+||||||+|
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 478999999999999999999865 66678865 89999999999999854 6688999999999999999999999
Q ss_pred ----cc-hhcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhc--------cccceecccc
Q 015067 152 ----SH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 218 (413)
Q Consensus 152 ----S~-i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~--------~~adlVpvG~ 218 (413)
|+ +.++.++.|.+++.+++++++++.+ ..+.|+++||+|||||||+ |++++||||+
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 44 4567778999999999999886633 3578999999999999999 5566999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 015067 219 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I 298 (413)
||+||+|||||||+|||+.|+ +++|..++++ ++||| +| .|||||++ +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999999887 7889888875 89999 67 69999997 5999999999999
Q ss_pred HHHhhhccCCCCCCcccCC--CCCCccchHHHHH--Hhc-CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHH
Q 015067 299 ANKIKRCKTDSSAGLEFDN--LERPECNNLLSIY--QLI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVR 371 (413)
Q Consensus 299 ~~KI~kA~Td~~~~i~~~~--~~rpev~~ll~i~--~~~-~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer 371 (413)
++|||+|+||+..+.+..+ +++|+++++++++ .++ +++++++++++|. +++|++||+.|++.|+++|.|+|+|
T Consensus 276 ~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer 355 (372)
T 3a04_A 276 RNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSR 355 (372)
T ss_dssp HHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988766433 6899999998853 333 3457999999997 6899999999999999999999999
Q ss_pred HHHHhcCHHHHHHHH
Q 015067 372 YEEIMSDSAYLDKVL 386 (413)
Q Consensus 372 ~~~~~~d~~~l~~iL 386 (413)
|++. +++++++|
T Consensus 356 ~e~~---~~~~~kil 367 (372)
T 3a04_A 356 LEKA---KTIAWKLV 367 (372)
T ss_dssp HHHH---HHHHHTSC
T ss_pred HHHh---HHHHHHHh
Confidence 9865 34555554
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=3.6e-65 Score=516.93 Aligned_cols=275 Identities=20% Similarity=0.263 Sum_probs=235.1
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
++++||+|++|||.+||||.+....+|++||+. ++++|+||||||++++ .+++.+++++.+++++|+|+|+||+|
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 367999999999999999965433468899997 8999999999999973 58999999999999999999999999
Q ss_pred -----cchh-cchhHHHHHhc----cccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchH
Q 015067 152 -----SHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 221 (413)
Q Consensus 152 -----S~i~-~~~el~w~L~~----~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 221 (413)
|+++ +|++++|.+.+ .++++|+.++.+|+.+. ..+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 7777 78899997654 67999999998887432 12578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015067 222 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 222 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
||++++||+|+|||++|+ |..+.. ++||||+||++|||||+| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999997553 444444 599999889889999997 4899999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHH--------hc------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 015067 302 IKRCKTDSSAGLEFDNLERPECNNLLSIYQ--------LI------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 359 (413)
Q Consensus 302 I~kA~Td~~~~i~~~~~~rpev~~ll~i~~--------~~------------~~~~~eel~~~~~--~~~~~dlK~~Lae 359 (413)
||+|+||+. +++.|+++.|++ .| +++++++++++|. +++|++||+.||+
T Consensus 270 I~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae 340 (373)
T 3vgj_A 270 IKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAM 340 (373)
T ss_dssp HHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999863 334455555443 23 2468999999997 5899999999999
Q ss_pred HHHHhhchHHHHHHHHhcCHHHHHHH
Q 015067 360 ALIEHLHPIQVRYEEIMSDSAYLDKV 385 (413)
Q Consensus 360 ~I~~~L~pirer~~~~~~d~~~l~~i 385 (413)
+|+++|+|||++|++..++++++++|
T Consensus 341 ~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 341 YINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 99999999999999887777777665
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-65 Score=520.75 Aligned_cols=267 Identities=22% Similarity=0.292 Sum_probs=236.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC---CCHHHHHHHH-HHHH----HHHHHcCCC
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGID 148 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~-~~~~----a~~lA~GiD 148 (413)
++++||||+|||.+|||||++++.+|++||+. ++++|+||||||+|++ .+++++++++ .+++ ++|+|||+|
T Consensus 33 ~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999998 8999999999999985 3899999999 8888 999999999
Q ss_pred CCC------cchhcchhHHHHH----hccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceecccc
Q 015067 149 NSK------SHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 218 (413)
Q Consensus 149 p~k------S~i~~~~el~w~L----~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~ 218 (413)
|+| |++++|. ++|.+ ++.++++||.|+.+||.+. ..+++++|+|+||+||||||++|++|+||||.
T Consensus 113 p~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~G~ 188 (375)
T 2cyc_A 113 PKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHAGM 188 (375)
T ss_dssp GGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEEEG
T ss_pred ccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeecccc
Confidence 998 7788887 78887 9999999999999999643 22568999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhh---hh-CCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCcc
Q 015067 219 DQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSKM 278 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~---~y-g~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg----------------~~KM 278 (413)
||+||++++||+|+|||+ .| | +.| +|..+.. ++||||++| ++||
T Consensus 189 DQ~~~i~l~rdla~r~n~~~~~~~g------------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 189 DQRKAHVIAIEVAQKLRYHPIVHEG------------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp GGHHHHHHHHHHGGGCSSSCEEETT------------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred hHHHHHHHHHHHHHHhCCccccccc------------ccC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhcc
Confidence 999999999999999997 23 2 112 5665544 599999654 4899
Q ss_pred ccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---------------------CCC
Q 015067 279 SKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKT 337 (413)
Q Consensus 279 SKS~p~~~s~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~---------------------~~~ 337 (413)
|||+|+ |+|+|+|+|++|++|||+|+||+. +++.|++++|+++|+ +++
T Consensus 253 SKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~ 321 (375)
T 2cyc_A 253 SKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT 321 (375)
T ss_dssp GGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESS
T ss_pred cCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhH
Confidence 999974 899999999999999999999873 456789999998774 457
Q ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHhhchHHHHHHHH
Q 015067 338 KGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEI 375 (413)
Q Consensus 338 ~eel~~~~~~--~~~~dlK~~Lae~I~~~L~pirer~~~~ 375 (413)
+++|+++|.+ +++++||+.||++|+++|+|+|++|++.
T Consensus 322 ~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 322 FEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999984 8999999999999999999999999864
No 14
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.4e-65 Score=520.95 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=240.8
Q ss_pred CCceEEEecCCCC-cchhhhHHHH-HHHHHHHhhc--ccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~-i~~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
++++||||++||| .+|||||+|+ +.+| ||+. +.++|+|||+||+++ +.+++++++++++++++|+|||+||+|
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKL 177 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 4789999999998 7999999998 4788 9997 467888999999875 679999999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhh--------ccccceeccccchHH
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVPVGEDQKQ 222 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~adlVpvG~DQ~~ 222 (413)
+.|..+++ |.-.+..++++|.|+++|+++.++.+ .+++++|+|+||+|||||++ .+++|+||||.||+|
T Consensus 178 ~~i~~qs~--~~~~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~ 255 (406)
T 3tze_A 178 TYIFSNVE--ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDP 255 (406)
T ss_dssp EEEEEHHH--HGGGGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHH
T ss_pred eEEEeccH--hHHHHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEeeccchHH
Confidence 88875544 55467778999999999999988876 46799999999999999955 467999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CccccCCCCCCceeecCCCHHHHHHH
Q 015067 223 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 223 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~-~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
|++++||+|+||| +++|..+.. ++|||| +|. +|||||+| +|+|+|+|+|++|++|
T Consensus 256 ~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~p~~I~kK 311 (406)
T 3tze_A 256 FFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDAQDTIRKK 311 (406)
T ss_dssp HHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCCHHHHHHH
Confidence 9999999999998 577887754 599999 554 69999987 4999999999999999
Q ss_pred hhh-ccCCCCCCcccC--CCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHH
Q 015067 302 IKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEE 374 (413)
Q Consensus 302 I~k-A~Td~~~~i~~~--~~~rpev~~ll~i~~~~~--~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~ 374 (413)
||+ |+||+..+++++ .+++|+++|+|+||++|+ ++++++|+++|. +++|++||+.||++|+++|+|||+||++
T Consensus 312 I~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~ 391 (406)
T 3tze_A 312 IIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKR 391 (406)
T ss_dssp HHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999887763 479999999999999996 457999999996 4899999999999999999999999999
Q ss_pred HhcC
Q 015067 375 IMSD 378 (413)
Q Consensus 375 ~~~d 378 (413)
+++|
T Consensus 392 ~~~d 395 (406)
T 3tze_A 392 VTDD 395 (406)
T ss_dssp CCHH
T ss_pred HHhh
Confidence 9864
No 15
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=8e-65 Score=510.50 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=217.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC---CHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
.++++|||++|||.+|||||++.+.+|++||+. ++++|+|||+||+|++. +++++++++++++++|+|+|+||+|
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 368999999999999999999999999999997 89999999999999853 8999999999999999999999998
Q ss_pred -----cch-hcchhHHHHHhc----cccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc---ccceecccc
Q 015067 152 -----SHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 218 (413)
Q Consensus 152 -----S~i-~~~~el~w~L~~----~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---~adlVpvG~ 218 (413)
|++ ++|. ++|.+.+ .+++++|.++.+++.+. ..+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 553 4455 7887765 78888888777777532 22568999999999999999999 999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 015067 219 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I 298 (413)
||+||++++||+|+|||+. .|..+.. ++||||+||++|||||+|+ |+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~------------------~p~~~~~---~~l~gL~dg~~KMSKS~~~--~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLK------------------IPISLSH---HMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCC------------------CCEEEEB---CCCCCTTCSSCCCSTTCGG--GSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCC------------------CceeecC---ccccCCCCcccccccCCCC--CeEeecCCHHHH
Confidence 9999999999999999843 2544443 5999998887899999874 899999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCccchHHHHHHh-------------cCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 015067 299 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL-------------ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 365 (413)
Q Consensus 299 ~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~-------------~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L 365 (413)
++|||+|+||+. +++ |+++.|+.+ ++++++++|+++|.+++|++||+.||++|+++|
T Consensus 252 ~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~l 321 (348)
T 2j5b_A 252 SEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTII 321 (348)
T ss_dssp HHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 999999999873 356 678887765 346789999999999999999999999999999
Q ss_pred chHHHHHHHH
Q 015067 366 HPIQVRYEEI 375 (413)
Q Consensus 366 ~pirer~~~~ 375 (413)
+|||++|++.
T Consensus 322 ~pir~~~~~~ 331 (348)
T 2j5b_A 322 DLVREHFKKP 331 (348)
T ss_dssp HHHHHHTTSG
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=9.5e-67 Score=536.95 Aligned_cols=301 Identities=16% Similarity=0.235 Sum_probs=247.4
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
++++||+||+|| |.||||||++++ .+| ||+ . +.++|+|||+||++++ .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999 899999999986 567 898 3 6789999999998873 5899999999999999999999999
Q ss_pred CcchhcchhHH--HHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhc-----------cccceecc
Q 015067 151 KSHVRAHVELM--WLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQSDFVPV 216 (413)
Q Consensus 151 kS~i~~~~el~--w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~adlVpv 216 (413)
|+.|..+++.. |++.... +++||+++++++++++ .+++++|+|+||+|||||||+ |++++|||
T Consensus 179 k~~i~~nSd~~~~~~~~~~~---~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~ 255 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVV---RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPC 255 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHH---HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEE
T ss_pred ceEEEeCchhhhhhHHHHHH---HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEe
Confidence 96666655531 3333333 4679999999888764 467899999999999999999 67999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 015067 217 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 296 (413)
Q Consensus 217 G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe 296 (413)
|.||++|++++||||+||| |++|..++. ++||||+++++|||||+++ ++|+|+|+|+
T Consensus 256 G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~n--saI~L~d~p~ 312 (432)
T 2ip1_A 256 AIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDDT--TAIFMTDTPK 312 (432)
T ss_dssp EGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CGG--GCCBTTCCHH
T ss_pred ccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCCC--CeEeccCCHH
Confidence 9999999999999999988 567887654 5999996545799999963 6999999999
Q ss_pred HHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHhc--CCcchHHHHHHHHHHHhhchHH
Q 015067 297 VIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQ 369 (413)
Q Consensus 297 ~I~~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~--~~~~~eel~~~~~~--~~~~dlK~~Lae~I~~~L~pir 369 (413)
+|++||++ |+||+..+.++++ +++|++++++.||++| +++++++|+++|.+ +++++||+.||++|+++|+|+|
T Consensus 313 ~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~r 392 (432)
T 2ip1_A 313 QIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQ 392 (432)
T ss_dssp HHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999976554433 4889999999999988 45578899999973 8999999999999999999999
Q ss_pred HHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015067 370 VRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 405 (413)
Q Consensus 370 er~~~~~~d----~~~l~~iL~~Ga~kAr~iA~~tl~~v~ 405 (413)
+||++++++ +.++++++.+|++|||++|++||++|+
T Consensus 393 er~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 393 ERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999988 888999999999999999999999986
No 17
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.2e-64 Score=511.99 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=228.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
.++++|+||+|||.+|||| ++++.+|++||+. ++++|+||||||+|++ .+++.+++++++++++|+|+|+||+|
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 3689999999999999999 7889999999997 8999999999999985 69999999999999999999999998
Q ss_pred -----cchhcchhHHHH----HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHH
Q 015067 152 -----SHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 222 (413)
Q Consensus 152 -----S~i~~~~el~w~----L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~ 222 (413)
|++++| +.+|. ++|.+++++|.|+.+|+.+.. +...+++|+|+||+||||||++|++|+||||.||+|
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 677777 56787 999999999999999997543 224588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCccccCCCCCCc
Q 015067 223 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 287 (413)
Q Consensus 223 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~d---------------g~~KMSKS~p~~~s 287 (413)
|++++||+|+||| +++|..++. ++||||++ |++|||||++ +|
T Consensus 190 ~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 9999999999988 346777665 49999964 3589999987 48
Q ss_pred eeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---------------------CCCHHHHHHHHh
Q 015067 288 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTKGEVAEECQ 346 (413)
Q Consensus 288 ~I~L~D~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~---------------------~~~~eel~~~~~ 346 (413)
+|+|+|+|++|++||++|+||+. +++.|+++.|+++|+ ++++++|+++|.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAK---------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTT---------CCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHhCcCCCC---------CCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 99999999999999999999873 456788999998765 248999999998
Q ss_pred c--CCcchHHHHHHHHHHHhhchHHHHHHH
Q 015067 347 N--MNWGTFKPLLTDALIEHLHPIQVRYEE 374 (413)
Q Consensus 347 ~--~~~~dlK~~Lae~I~~~L~pirer~~~ 374 (413)
+ +++++||+.||++|+++|+|+|+||++
T Consensus 318 ~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 318 DGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 899999999999999999999999984
No 18
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2e-64 Score=512.65 Aligned_cols=274 Identities=15% Similarity=0.207 Sum_probs=242.1
Q ss_pred CCceEEEecCCCCcchhhhHHHH-HHHHHHHhhc--ccEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKS 152 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~-i~~~~~lQ~~--~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GiDp~kS 152 (413)
.+++||||++|||.+|||||+|+ +.+| ||+. +.++|+|+|+||++++ .+++++++++++++++|+|||+||+|+
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt 158 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKT 158 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 47899999999999999999999 5888 9996 4678889999999985 799999999999999999999999998
Q ss_pred chhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhh--------ccc-cceeccccchHH
Q 015067 153 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVPVGEDQKQ 222 (413)
Q Consensus 153 ~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~-adlVpvG~DQ~~ 222 (413)
.|..+++ |.-+|..++++|.|+++|+++.++++ .+++++|+|+||+||||||+ .++ +|+||||.||+|
T Consensus 159 ~i~~qS~--~~~~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~ 236 (386)
T 3hzr_A 159 FIYTDYQ--YFGKMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQ 236 (386)
T ss_dssp EEEEHHH--HHHHHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHH
T ss_pred EEEeccH--HHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccccccchHH
Confidence 8887666 65588899999999999999988776 46799999999999999776 456 999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 015067 223 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 302 (413)
Q Consensus 223 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI 302 (413)
|+++|||||+||| +++|..+.. ++|||| +|.+|||||++ +|+|+|+|+|++|++||
T Consensus 237 hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p~~i~kKI 292 (386)
T 3hzr_A 237 FHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNAKQVERKI 292 (386)
T ss_dssp HHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCHHHHHHHH
Confidence 9999999999998 467855533 699999 45469999986 59999999999999999
Q ss_pred hh-ccCCCCCCccc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHH
Q 015067 303 KR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEI 375 (413)
Q Consensus 303 ~k-A~Td~~~~i~~--~~~~rpev~~ll~i~~~~~--~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~ 375 (413)
|+ |+||++.+.+. ..+++|+++++++||++|+ ++++++|+++|. +++|++||+.||++|+++|+|||+||+++
T Consensus 293 ~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~ 372 (386)
T 3hzr_A 293 NKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPI 372 (386)
T ss_dssp HHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999776432 3468999999999999985 457899999997 58999999999999999999999999998
Q ss_pred hcC
Q 015067 376 MSD 378 (413)
Q Consensus 376 ~~d 378 (413)
++|
T Consensus 373 ~~~ 375 (386)
T 3hzr_A 373 TTA 375 (386)
T ss_dssp CHH
T ss_pred HHH
Confidence 754
No 19
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=7.5e-64 Score=509.70 Aligned_cols=281 Identities=20% Similarity=0.278 Sum_probs=236.6
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--ccEEEEEecceeecC--CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
+++++|+|++|| |.||||||++++ .+| ||++ +.++|+|||+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 368999999999 689999999998 778 9997 357999999999654 46999999999999999999999999
Q ss_pred CcchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhh-------cc-c---cceecccc
Q 015067 151 KSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------LY-Q---SDFVPVGE 218 (413)
Q Consensus 151 kS~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl-------~~-~---adlVpvG~ 218 (413)
++.|..+++ |.-.+..++.||.|+++++++.+..+ .+++++|+|+||+||||||+ ++ + +|+||||.
T Consensus 151 kt~i~~ns~--~~~~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~ 228 (393)
T 3hv0_A 151 LTFIFTNLE--YIAELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAI 228 (393)
T ss_dssp TEEEEEHHH--HHHHHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEG
T ss_pred ceEEEECCH--HHHHHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceeccccc
Confidence 988876444 76666788899999999999988776 46899999999999999996 33 3 48899999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 015067 219 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I 298 (413)
||+||++++||+|+||| +++|..+.. ++||||+++++|||||++ +|+|+|+|+|++|
T Consensus 229 DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--nsaI~L~D~p~~i 285 (393)
T 3hv0_A 229 DQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ--NSSIFVNDNEESI 285 (393)
T ss_dssp GGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC---------------CCCCBTTCCHHHH
T ss_pred chHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC--CCeEeccCCHHHH
Confidence 99999999999999988 567877765 599999544479999997 4799999999999
Q ss_pred HHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHH
Q 015067 299 ANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVR 371 (413)
Q Consensus 299 ~~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~--~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer 371 (413)
++|||+ |+||+..++++++ +++|+++++|+||++| +++++++++++|. +++|++||+.|+++|+++|+|+|+|
T Consensus 286 ~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer 365 (393)
T 3hv0_A 286 RNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKN 365 (393)
T ss_dssp HHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999888764 7999999999999998 4668999999997 6899999999999999999999999
Q ss_pred HHHHhcCHHHHHHHH
Q 015067 372 YEEIMSDSAYLDKVL 386 (413)
Q Consensus 372 ~~~~~~d~~~l~~iL 386 (413)
|+++++|. |++++
T Consensus 366 ~~~~~~d~--~~~~~ 378 (393)
T 3hv0_A 366 REAINDDV--IAKFT 378 (393)
T ss_dssp HHTCCHHH--HHHHH
T ss_pred HHHHHHhH--HHHHh
Confidence 99998753 77766
No 20
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.2e-63 Score=534.52 Aligned_cols=285 Identities=21% Similarity=0.323 Sum_probs=243.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC-
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GiDp~k- 151 (413)
++++|||||+|||.+||||++....+|++||+. ++++|+||||||+|++ .+++++++++.+++++|+|+|+||+|
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 468999999999999999966543468899997 7999999999999973 58899999999999999999999998
Q ss_pred -----cc-hhcchhHHHHHh----ccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchH
Q 015067 152 -----SH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 221 (413)
Q Consensus 152 -----S~-i~~~~el~w~L~----~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 221 (413)
|+ +++|++++|.+. +.++++||.++.+|+.+. . +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~---~-~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT---E-GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc---c-CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 55 778888999864 489999999999998642 1 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015067 222 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 222 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
||++++||+|+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996543 444443 599999889889999986 3899999999999999
Q ss_pred hhhccCCCCCC--cccCCCCC----CccchHHHHHHhc--------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 015067 302 IKRCKTDSSAG--LEFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 359 (413)
Q Consensus 302 I~kA~Td~~~~--i~~~~~~r----pev~~ll~i~~~~--------------~~~~~eel~~~~~--~~~~~dlK~~Lae 359 (413)
||+|+||+... .+...++. +++|++|+||.+| +++++++++++|. +++|++||+.|++
T Consensus 253 I~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae 332 (690)
T 3p0j_A 253 IRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLID 332 (690)
T ss_dssp HHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999998652 11122333 5899999999986 3468999999997 4899999999999
Q ss_pred HHHHhhchHHHHHHHHhcCHHHHHHHHH
Q 015067 360 ALIEHLHPIQVRYEEIMSDSAYLDKVLA 387 (413)
Q Consensus 360 ~I~~~L~pirer~~~~~~d~~~l~~iL~ 387 (413)
+|+++|+|||+||+++.++++++++|+.
T Consensus 333 ~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 333 EVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999875
No 21
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=4.8e-64 Score=511.46 Aligned_cols=287 Identities=17% Similarity=0.226 Sum_probs=218.4
Q ss_pred CCceEEEecCCCC-cchhhhHHHH-HHHHHHHhhc--ccEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~-i~~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+++++|+|++||| .||||||+++ +.+| ||+. +.++|+|+|+|++++ +.+++++++++++++++|+|||+||+|
T Consensus 77 ~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 154 (395)
T 3i05_A 77 QPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPEL 154 (395)
T ss_dssp CCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTS
T ss_pred CCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4789999999999 6999999998 4778 9997 457888999977665 679999999999999999999999999
Q ss_pred cchhcchhHHHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHH--------hhhccc----cceecccc
Q 015067 152 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----SDFVPVGE 218 (413)
Q Consensus 152 S~i~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA--------DIl~~~----adlVpvG~ 218 (413)
+.|..+++ |.-.....+++|.|+++|+++.++.+ .+++++|+|+||+|||| ||++|+ +|+||||.
T Consensus 155 t~i~~ns~--~~~~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~ 232 (395)
T 3i05_A 155 TFIFRDFD--YMGCMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAI 232 (395)
T ss_dssp EEEEEHHH--HTTTSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEG
T ss_pred eEEEEcCH--HHHHHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEecc
Confidence 88876554 54345577889999999999988776 46799999999999999 677898 99999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 015067 219 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298 (413)
Q Consensus 219 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I 298 (413)
||+||++++||+|+||| +++|..+.. ++||||+++++||||| + +|+|+|+|+|++|
T Consensus 233 DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L~D~p~~i 288 (395)
T 3i05_A 233 DQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLLTDTEKMV 288 (395)
T ss_dssp GGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC----------------CCBTTCCHHHH
T ss_pred chHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C--CCcccCCCCHHHH
Confidence 99999999999999998 456776654 5999995444799999 4 6999999999999
Q ss_pred HHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHH
Q 015067 299 ANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVR 371 (413)
Q Consensus 299 ~~KI~k-A~Td~~~~i~~--~~~~rpev~~ll~i~~~~--~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer 371 (413)
++|||+ |+||+..++++ +++++|+++++|+||++| +++++++|+++|. +++|++||+.|+++|+++|+|||+|
T Consensus 289 ~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer 368 (395)
T 3i05_A 289 KDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEK 368 (395)
T ss_dssp HHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999887664 567999999999999999 5668999999997 4899999999999999999999999
Q ss_pred HHHHhcCHHHHHHHH----HHHHHHH
Q 015067 372 YEEIMSDSAYLDKVL----ADGAAKA 393 (413)
Q Consensus 372 ~~~~~~d~~~l~~iL----~~Ga~kA 393 (413)
|+++++| .+++.+ ..||+||
T Consensus 369 ~~~~~~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 369 RKLVTDE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HTTCCHH--HHHHHHSCCCCTTTTC-
T ss_pred HHHHHHh--HHHHHhChhcccchhhh
Confidence 9999864 455555 3666665
No 22
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.2e-62 Score=502.52 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=232.0
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--ccEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 015067 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
+++++|+||+|| |.||||||++++ .+| ||+. +.++|+|+|+|+++++ .+++++++++++++++|+|+|+||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999 889999999997 778 9997 4578899999999864 5999999999999999999999999
Q ss_pred CcchhcchhH---HHHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhc------------------
Q 015067 151 KSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL------------------ 208 (413)
Q Consensus 151 kS~i~~~~el---~w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~------------------ 208 (413)
++.|..++++ .|++.+ +-+|.|.++++...+..+ .+++++|+|+||+|||||||.
T Consensus 168 kt~i~~nSd~~~~~~~~~~---l~~L~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~ 244 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRF---SCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTG 244 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHH---HHHHHHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC----
T ss_pred ceEEEeCchhhcchhHHHH---HHHHHhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccc
Confidence 9666655542 122222 224555555555554444 367899999999999999983
Q ss_pred ------------------------cccc-----------------eeccccchHHHHHHHHHHHHHHhhhhCCccccccC
Q 015067 209 ------------------------YQSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 247 (413)
Q Consensus 209 ------------------------~~ad-----------------lVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g 247 (413)
|++| +||||+||+||+|||||||+|||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------------ 312 (451)
T 3foc_A 245 NEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------------ 312 (451)
T ss_dssp ---------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT------------
T ss_pred cchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC------------
Confidence 3334 99999999999999999999988
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccc
Q 015067 248 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECN 324 (413)
Q Consensus 248 ~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~k-A~Td~~~~i~~--~~~~rpev~ 324 (413)
+++|..+.. ++||||+++++|||||+++ |+|+|+|+|++|++|||+ |+||+..++++ .++++|++|
T Consensus 313 ------~~~p~~~~~---~~l~gLdG~~~KMSKS~~n--s~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~ 381 (451)
T 3foc_A 313 ------HPKNAYLLG---KFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVD 381 (451)
T ss_dssp ------SCCCEEEEE---CCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTC
T ss_pred ------CCCCeeecC---CcccCCCCCCCccCCCCCC--CeeeecCCHHHHHHHHhhhccCCCCccchhcccCCCCcchh
Confidence 467776654 5999996555799999973 799999999999999999 99999887764 567999999
Q ss_pred hHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHH
Q 015067 325 NLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 385 (413)
Q Consensus 325 ~ll~i~~~~--~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 385 (413)
++|+||++| +++++++|+++|. +++|++||+.|+++|+++|+|||+||+++++| .|++.
T Consensus 382 ~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~d--~v~~f 444 (451)
T 3foc_A 382 VSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT--MIESF 444 (451)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHH
T ss_pred hHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 999999999 4558899999997 58999999999999999999999999998763 45543
No 23
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.8e-60 Score=474.51 Aligned_cols=258 Identities=24% Similarity=0.342 Sum_probs=228.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
.+++||+|++|||.+||||+ +++.+|++||+. ++++|+||||||+|++. +++.+++++++++++|+|+|+||++
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 36799999999999999985 678999999995 89999999999999865 9999999999999999999999998
Q ss_pred ---cchh---cchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHH
Q 015067 152 ---SHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 225 (413)
Q Consensus 152 ---S~i~---~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hle 225 (413)
|+++ ++.++.|.++|.+++++|.|+.+++.+ .. +..++|+|+||+||||||++|++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 6775 677889999999999999998776532 11 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhc
Q 015067 226 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305 (413)
Q Consensus 226 LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA 305 (413)
++|+||+||| ++.|..++. ++||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~------------------~~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLG------------------YSSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGT------------------CCCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcC------------------CCCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 9999999988 345766665 499999 57 799999 3 58999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhc--------------------CCCCHHHHHHHHhc--CCcchHHHHHHHHHHH
Q 015067 306 KTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQN--MNWGTFKPLLTDALIE 363 (413)
Q Consensus 306 ~Td~~~~i~~~~~~rpev~~ll~i~~~~--------------------~~~~~eel~~~~~~--~~~~dlK~~Lae~I~~ 363 (413)
+||+. .++.|++++|+++| +++++++++++|.+ ++|++||+.|+++|++
T Consensus 240 ~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~ 310 (323)
T 2cyb_A 240 YCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNM 310 (323)
T ss_dssp CCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99873 45678999999987 34589999999984 8999999999999999
Q ss_pred hhchHHHHHHH
Q 015067 364 HLHPIQVRYEE 374 (413)
Q Consensus 364 ~L~pirer~~~ 374 (413)
+|+|||+||++
T Consensus 311 ~l~pir~~~~~ 321 (323)
T 2cyb_A 311 LLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 24
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.7e-59 Score=465.99 Aligned_cols=253 Identities=25% Similarity=0.321 Sum_probs=222.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCC---
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK--- 151 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GiDp~k--- 151 (413)
.+++||+||+|||.+|||| ++++.+|++||+. ++++|+|||+||++++. +++++++++.+++++|+|+|+| ..
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~~~~ 104 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AKYVY 104 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEE
Confidence 3689999999999999999 7888999999997 89999999999999864 8999999999999999999999 32
Q ss_pred -cchhcchhHHHH----HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchHHHHHH
Q 015067 152 -SHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 226 (413)
Q Consensus 152 -S~i~~~~el~w~----L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~~hleL 226 (413)
|+++.+ +.+|. ++|.+++++|.|+.+|+.+. . +..++|+|+||+||||||++|++|+||||.||++|++|
T Consensus 105 qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l 179 (314)
T 2zp1_A 105 GSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHML 179 (314)
T ss_dssp GGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred CChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHHHH
Confidence 777766 44565 99999999999999998642 2 23499999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhcc
Q 015067 227 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306 (413)
Q Consensus 227 aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~kA~ 306 (413)
+|++++ ++|..+.. ++||||+ |++||||| + +|+|+|+|+|++|++|||+|+
T Consensus 180 ~R~i~~----------------------~~~~~~~~---~~l~~l~-G~~KMSKS-~--~~~I~L~d~~~~i~~KI~~a~ 230 (314)
T 2zp1_A 180 ARELLP----------------------KKVVCIHN---PVLTGLD-GEGKMSSS-K--GNFIAVDDSPEEIRAKIKKAY 230 (314)
T ss_dssp HHHHSS----------------------SCCEEEEE---CCCBCTT-SSSBCCTT-T--TCSCBTTCCHHHHHHHHHHSC
T ss_pred HHHhcC----------------------CCcEEeec---cccccCC-cccccCCC-C--cceecCCCCHHHHHHHHHhCC
Confidence 999864 23555444 5999994 87899999 4 589999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhc-----------------CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhch
Q 015067 307 TDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 367 (413)
Q Consensus 307 Td~~~~i~~~~~~rpev~~ll~i~~~~-----------------~~~~~eel~~~~~--~~~~~dlK~~Lae~I~~~L~p 367 (413)
||+. .++.|++|+||++| ++++++||+++|. +++|++||+.||++|+++|+|
T Consensus 231 td~~---------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p 301 (314)
T 2zp1_A 231 CPAG---------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEP 301 (314)
T ss_dssp CCTT---------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9874 44678999999987 3459999999997 479999999999999999999
Q ss_pred HHHHHHH
Q 015067 368 IQVRYEE 374 (413)
Q Consensus 368 irer~~~ 374 (413)
+|++|+.
T Consensus 302 ~r~~~~~ 308 (314)
T 2zp1_A 302 IRKRLLE 308 (314)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9999974
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.4e-60 Score=491.00 Aligned_cols=279 Identities=19% Similarity=0.286 Sum_probs=237.7
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
++++||+||+|| |.||||||++++ .+| ||+ . +.++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 478999999999 899999999987 677 887 3 6799999999999985 68999999999999999999999999
Q ss_pred cchhcchhHH----HHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhc-----------cccceec
Q 015067 152 SHVRAHVELM----WLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQSDFVP 215 (413)
Q Consensus 152 S~i~~~~el~----w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~adlVp 215 (413)
+.|..++++. +++... .+++||+++++++++++ .+++++|+|+||+||||||++ |++|+||
T Consensus 185 t~i~~nSd~~~~l~~~~~l~---~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVp 261 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNV---VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIP 261 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHH---HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEE
T ss_pred eEEEechhhhhhHHHHHHHH---HHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEE
Confidence 6665554421 233322 46889999999988765 467899999999999999999 7889999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 015067 216 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 295 (413)
Q Consensus 216 vG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~p 295 (413)
||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||++ +|+|+|+|+|
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsaI~L~D~p 318 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSIFLTDTA 318 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSCCBTTCCH
T ss_pred eehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCeeeccCCH
Confidence 99999999999999999988 567887654 599999543479999997 3699999999
Q ss_pred HHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CCcchHHHHHHHHHHHhhchH
Q 015067 296 DVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPI 368 (413)
Q Consensus 296 e~I~~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~~--~~~~eel~~~~~~--~~~~dlK~~Lae~I~~~L~pi 368 (413)
++|++||++ |+||+..++++++ +++|++++++.||++|+ ++++++|+++|.+ ++++++|+.||++|+++|+|+
T Consensus 319 ~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~ 398 (437)
T 1r6u_A 319 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEH 398 (437)
T ss_dssp HHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999976655433 37899999999999885 4578889999973 899999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHH
Q 015067 369 QVRYEEIMSDSAYLDKV 385 (413)
Q Consensus 369 rer~~~~~~d~~~l~~i 385 (413)
|+||++++++ .+++.
T Consensus 399 rer~~~~~~~--~~~~~ 413 (437)
T 1r6u_A 399 QARRKEVTDE--IVKEF 413 (437)
T ss_dssp HHHHHTCCHH--HHHHH
T ss_pred HHHHHHHHHH--HHHHh
Confidence 9999999754 34444
No 26
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=5.4e-60 Score=492.05 Aligned_cols=274 Identities=19% Similarity=0.291 Sum_probs=235.2
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+++++|+||+|| |.||||||+|++ .+| ||+ . +.++|+|+|+|+++++ .+++++++++++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 478999999999 899999999987 678 887 3 7789999999999974 68999999999999999999999999
Q ss_pred cchhcchhHH----HHHhccccHHHHhhhhhHHHhHHhhC-CCCccchhhhhhHHHHHhhhc-----------cccceec
Q 015067 152 SHVRAHVELM----WLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQSDFVP 215 (413)
Q Consensus 152 S~i~~~~el~----w~L~~~~~i~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~adlVp 215 (413)
+.|..++++. +++.. +.+|+|++++++++++++ .+++++|+|+||+||||||++ |++|+||
T Consensus 232 ~~i~~nsd~~~~l~~~~~~---~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~Vp 308 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKN---VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIP 308 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHH---HHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEE
T ss_pred eEEEechhhhcccHHHHHH---HHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEe
Confidence 6666555421 23322 248889999999887765 467899999999999999999 6889999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 015067 216 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 295 (413)
Q Consensus 216 vG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~p 295 (413)
||.||++|++++||||+||| |++|..++. ++||||+++++|||||+++ |+|+|+|+|
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~n--saI~L~d~p 365 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDPN--SSIFLTDTA 365 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSTT--CCCBTTCCH
T ss_pred ccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCCC--CceeecCCH
Confidence 99999999999999999988 567887664 5999995434799999973 699999999
Q ss_pred HHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CCcchHHHHHHHHHHHhhchH
Q 015067 296 DVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPI 368 (413)
Q Consensus 296 e~I~~KI~k-A~Td~~~~i~~~~--~~rpev~~ll~i~~~~~--~~~~eel~~~~~~--~~~~dlK~~Lae~I~~~L~pi 368 (413)
++|++||++ |+||+..++++++ +++|++++++.||.+|+ ++++++|+++|.+ ++++++|+.||++|+++|+||
T Consensus 366 ~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pi 445 (477)
T 1r6t_A 366 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEH 445 (477)
T ss_dssp HHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999976554433 38999999999999985 4578889999973 899999999999999999999
Q ss_pred HHHHHHHhcC
Q 015067 369 QVRYEEIMSD 378 (413)
Q Consensus 369 rer~~~~~~d 378 (413)
|+||++++++
T Consensus 446 rer~~~~~~~ 455 (477)
T 1r6t_A 446 QARRKEVTDE 455 (477)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 27
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-58 Score=472.04 Aligned_cols=273 Identities=23% Similarity=0.230 Sum_probs=219.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecC-CC-CHHHHHHHH----HHHHHHHHHcCCCCC
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~-~~~~i~~~~----~~~~a~~lA~GiDp~ 150 (413)
++++||+||+|||.||||||+++++.|..+|..++++|+|+||||+|+ +. +.+.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999999888877999999999999997 43 445566554 345567899999999
Q ss_pred C------cch---hcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchH
Q 015067 151 K------SHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 221 (413)
Q Consensus 151 k------S~i---~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 221 (413)
+ |++ .++.++.|.++|.+++++++|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 8 666 34556689999999999999886532 11 2 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015067 222 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 222 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
+|++++|+++++|| +++|..++.+ +||+| +|++|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999988 4568887764 99999 53379999997 3679999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHH----------------------------hcCCCCHHHHHHHHhc--CCcc
Q 015067 302 IKRCKTDSSAGLEFDNLERPECNNLLSIYQ----------------------------LISGKTKGEVAEECQN--MNWG 351 (413)
Q Consensus 302 I~kA~Td~~~~i~~~~~~rpev~~ll~i~~----------------------------~~~~~~~eel~~~~~~--~~~~ 351 (413)
||+|+||+. +++.++++.|++ +++++++++|+++|.+ ++++
T Consensus 250 I~ka~Td~~---------~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~ 320 (394)
T 2dlc_X 250 INSAFCSPG---------NVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPP 320 (394)
T ss_dssp HHHSCCCTT---------CCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHH
T ss_pred HHHhcCCCC---------CCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHH
Confidence 999999874 344556666643 3456799999999984 8999
Q ss_pred hHHHHHHHHHHHhhchHHHHHHHHhcCHHHHHHHHHHHH
Q 015067 352 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 390 (413)
Q Consensus 352 dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga 390 (413)
+||+.||++|+++|+|+|++|+ ++++ ++++++.|.
T Consensus 321 ~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~~ 355 (394)
T 2dlc_X 321 DLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKGY 355 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhccC
Confidence 9999999999999999999988 3444 788887653
No 28
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.9e-58 Score=475.28 Aligned_cols=280 Identities=19% Similarity=0.229 Sum_probs=231.8
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 144 (413)
.++++|+||+|||. +|||||++ +.+|++||+. |+++|+|||+||+++ | .+++++++|+..+.+.+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 46899999999996 99999995 7899999997 899999999999997 3 246788888877666554
Q ss_pred cCCC--CCC------cchhcchhHHHHH--hccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcccccee
Q 015067 145 CGID--NSK------SHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 214 (413)
Q Consensus 145 ~GiD--p~k------S~i~~~~el~w~L--~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlV 214 (413)
+|+| |++ |++..+.++.|++ .+.++++++.++.+||.+... .+++++|+|+||+||||||++|++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 8999 998 5555554566765 889999999888899976543 267899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015067 215 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 294 (413)
Q Consensus 215 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~ 294 (413)
|||.||++|++++||+++|||. ..|..+.. ++||++ ||++|||||++ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 9999999999999999999872 22333333 599999 78679999985 69999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhc----hHHH
Q 015067 295 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH----PIQV 370 (413)
Q Consensus 295 pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~~~~~~dlK~~Lae~I~~~L~----pire 370 (413)
|++|++||+++.+ ++++.||++|++.+++|+++.+.+ +++++|+.||++|+++++ |||+
T Consensus 247 p~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~~~~~pire 309 (432)
T 1h3f_A 247 PEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYALPQIPPRI 309 (432)
T ss_dssp HHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSSCCSCC
T ss_pred HHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999863 478999999999999999998887 999999999999999999 9999
Q ss_pred HHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 015067 371 RYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 404 (413)
Q Consensus 371 r~~~~~~d~~~l~~iL~~----Ga~kAr~iA~~tl~~v 404 (413)
||+++++ ++||++||++ |++.|++ |++.-+.+
T Consensus 310 rr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 310 DRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 9999999 9999999999 9888864 45544444
No 29
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1e-57 Score=462.57 Aligned_cols=259 Identities=24% Similarity=0.227 Sum_probs=212.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~---~--~~a~~lA~GiDp~ 150 (413)
.+++||+||+|||.+|||||+|+++.|..+|..++++|+|+||||+|+ +.+++++.+++. + +.+.|+|||+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999888777767999999999999997 567777654443 2 3345799999999
Q ss_pred C------cchh---cchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhccccceeccccchH
Q 015067 151 K------SHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 221 (413)
Q Consensus 151 k------S~i~---~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlVpvG~DQ~ 221 (413)
+ |+++ ++.++.|.++|.++++++.+..+. ..+. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~---v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE---VVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT---TSCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh---hhcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 8 7775 455567889999999998886321 1111 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 015067 222 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301 (413)
Q Consensus 222 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 301 (413)
+|++++|||+++|+ +.+|..++. ++||+| +| +|||||+++ ++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~n--s~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEEE--SKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C-------C--CSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCCC--CeEeccCCHHHHHHH
Confidence 99999999999985 567888775 499999 57 699999974 799999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHh--------c------------CCCCHHHHHHHHhc--CCcchHHHHHHH
Q 015067 302 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWGTFKPLLTD 359 (413)
Q Consensus 302 I~kA~Td~~~~i~~~~~~rpev~~ll~i~~~--------~------------~~~~~eel~~~~~~--~~~~dlK~~Lae 359 (413)
||+|+||+. +++.++++.|+++ | +++++++|+++|.+ +++++||+.||+
T Consensus 245 i~~A~td~~---------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~ 315 (372)
T 1n3l_A 245 LKKAFCEPG---------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEV 315 (372)
T ss_dssp HHTCCCCTT---------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHccCCCC---------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999874 3455788888775 3 45699999999984 899999999999
Q ss_pred HHHHhhchHHHHHH
Q 015067 360 ALIEHLHPIQVRYE 373 (413)
Q Consensus 360 ~I~~~L~pirer~~ 373 (413)
+|+++|+|+|++|+
T Consensus 316 ~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 316 ALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhc
Confidence 99999999999997
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=9e-58 Score=454.93 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=219.4
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHH---HHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~---~~~~a~ 141 (413)
.+++||+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+|+ |. +++++++++ +++++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 7899999997 899999999999997 43 899999999 888999
Q ss_pred HHHcCCCCCCcchhc-------chhHHHH--HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc---
Q 015067 142 YLACGIDNSKSHVRA-------HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 209 (413)
Q Consensus 142 ~lA~GiDp~kS~i~~-------~~el~w~--L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 209 (413)
|+|+|+||+++.|.. ++++.|+ ++|.++++|+.++.+||++.... .+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 999999999844433 2455677 89999999999999999765421 2578999999999999999999
Q ss_pred -ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 210 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 210 -~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
++|+++||.||+||++++||||+|||+ + .|..+.. ++||++ || +|||||++ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 999999999999999999999999994 2 2334443 489999 67 69999986 69
Q ss_pred eecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHh
Q 015067 289 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 364 (413)
Q Consensus 289 I~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~Lae~I~~~ 364 (413)
|+|+| +|+++++||+++. ++++.+++.+|.+++++++++++++|. +.+++++|+.||++|+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~ 310 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRL 310 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999863 234566666666667789999999997 469999999999999999
Q ss_pred hchHHHHHHH
Q 015067 365 LHPIQVRYEE 374 (413)
Q Consensus 365 L~pirer~~~ 374 (413)
|+|.+++.+.
T Consensus 311 l~~~~~~~~a 320 (322)
T 2yxn_A 311 VHGEEGLQAA 320 (322)
T ss_dssp HHHHHHHHHT
T ss_pred hCCHHHHHHh
Confidence 9999988653
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=3.8e-55 Score=441.17 Aligned_cols=255 Identities=17% Similarity=0.144 Sum_probs=201.2
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 144 (413)
++++||+||+|||. +||||++ ++.+|++||+. ++++|+|||+||+|+ |. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 35899999999997 9999965 57899999997 899999999999997 32 699999999999999999
Q ss_pred cCCCCCC-----------cchhc------chhHHHHHh---ccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHH
Q 015067 145 CGIDNSK-----------SHVRA------HVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 204 (413)
Q Consensus 145 ~GiDp~k-----------S~i~~------~~el~w~L~---~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 204 (413)
+ +||++ +.|.. +.++.|++. +.+++++|.++.+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 98854 23222 223445543 48899999999998865432 25789999999999999
Q ss_pred hhhcc----ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcccc
Q 015067 205 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 280 (413)
Q Consensus 205 DIl~~----~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSK 280 (413)
||++| ++|+||||.||+||++++||||+|||+ + .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999994 2 2333333 488999 78 69999
Q ss_pred CCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHH
Q 015067 281 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 356 (413)
Q Consensus 281 S~p~~~s~I~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~ 356 (413)
|. +|+|+|+| +|++|++||+++. ++++.+++.+|++++++++++|+++|. +.+++++|+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQP-------------DDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 96 58999999 9999999999953 245778888888777889999999997 4689999999
Q ss_pred HHHHHHHhhchHHHHHHH
Q 015067 357 LTDALIEHLHPIQVRYEE 374 (413)
Q Consensus 357 Lae~I~~~L~pirer~~~ 374 (413)
||++|+++|+..++..+.
T Consensus 322 La~~v~~~l~g~~~~~~a 339 (356)
T 2pid_A 322 LAAEVTKLVHGREGLDSA 339 (356)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHH
Confidence 999999999998766554
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-54 Score=443.46 Aligned_cols=257 Identities=13% Similarity=0.130 Sum_probs=219.5
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C--------CCHHHHHHHHHHH---HHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~--------~~~~~i~~~~~~~---~a~~ 142 (413)
.++++|+||+|||. +||||++ .+.+|++||+. ++++|+|||+||+|+ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999996 9999966 57899999997 899999999999997 5 6789999999755 7779
Q ss_pred HHcCCCCCC------cchhc-chhHHHH--HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc----
Q 015067 143 LACGIDNSK------SHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 209 (413)
Q Consensus 143 lA~GiDp~k------S~i~~-~~el~w~--L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 209 (413)
+|+|+||+| |++.. +.++.|+ +++.+++++|.|+.+||++. ..+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhccC
Confidence 999999999 55444 3467788 89999999999999999765 23678999999999999999999
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
++|+||||.||+||++++||||+|||+ ..|..+.. ++||++ || +|||||+++ ++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS~~n--saI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKSTGG--GSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBCSSS--CBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCCCCC--CeE
Confidence 999999999999999999999999994 22333333 489999 78 699999863 699
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhh
Q 015067 290 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 365 (413)
Q Consensus 290 ~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L 365 (413)
+|+| +|++|++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||++|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~ 308 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNTA-------------DADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLV 308 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999953 245677777777777789999999997 5589999999999999999
Q ss_pred chHHHHHHHH
Q 015067 366 HPIQVRYEEI 375 (413)
Q Consensus 366 ~pirer~~~~ 375 (413)
++.++..+..
T Consensus 309 hg~~~~~~a~ 318 (432)
T 2jan_A 309 HGEAATAAVE 318 (432)
T ss_dssp HHHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9987665543
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=8.8e-53 Score=428.53 Aligned_cols=269 Identities=17% Similarity=0.133 Sum_probs=215.6
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 144 (413)
.++++|+||+|||. ||||||++ +.+|++||+. ++++|+|||+||+|+ | .+++.+++|+..+.++++|
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999996 7899999997 899999999999997 4 2778899999999888888
Q ss_pred cC-----------CC---CCCcch-------hcchhHHHH--HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHH
Q 015067 145 CG-----------ID---NSKSHV-------RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 201 (413)
Q Consensus 145 ~G-----------iD---p~kS~i-------~~~~el~w~--L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvL 201 (413)
+| +| |+++.| +.+.++.|+ +++.+++++|.+..+||.+.. ..+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~--~~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMT--QGDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTS--SSSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhc--CCCCcccHHHHHHHH
Confidence 65 45 577444 344456676 777888887666667765322 136789999999999
Q ss_pred HHHhhhcc----ccceeccccchHHHHHHHHHHHHHHhhhhCCc-----cccccCCCCCccccCCccccCCCCcccccCC
Q 015067 202 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGR-----KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 272 (413)
Q Consensus 202 QAADIl~~----~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~-----~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~ 272 (413)
|||||+++ ++|+||||.||+||++++||||+|||+.|+.. ..+++| +..|..+.. ++||+|
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 69999999999999999999999999887310 012222 344555544 599999
Q ss_pred CCCCccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cC
Q 015067 273 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 348 (413)
Q Consensus 273 dg~~KMSKS~p~~~s~I~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~ 348 (413)
|| +|||||+ +|+|+|+| +|+++++||+++. ++++.+++.+|++++++++++|+++|. +.
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-------------DQEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-------------TTTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 77 6999997 47999999 9999999999852 246778888888778889999999997 35
Q ss_pred CcchHHHHHHHHHHHhhchHHHHHHHH
Q 015067 349 NWGTFKPLLTDALIEHLHPIQVRYEEI 375 (413)
Q Consensus 349 ~~~dlK~~Lae~I~~~L~pirer~~~~ 375 (413)
+++++|+.||++|+++|++.++..+..
T Consensus 353 ~~~~~K~~LA~~v~~~lhg~~~~~~a~ 379 (392)
T 1y42_X 353 SKRVAQHTLAREVVTLVHGKQEASAAE 379 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 899999999999999999998776543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=5.1e-53 Score=433.20 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=209.3
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHH---HHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~---~a~ 141 (413)
.++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+|+ |. +++++++|+..+ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999996 7899999997 899999999999997 43 899999999766 666
Q ss_pred HHHcCCCCCCcch------hcchhHHHHHhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc----cc
Q 015067 142 YLACGIDNSKSHV------RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY----QS 211 (413)
Q Consensus 142 ~lA~GiDp~kS~i------~~~~el~w~L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~----~a 211 (413)
|+++|+||+++.| +.+..+.|+|.++.+...++||.++...+++.+ +++++|+|+||+||||||++| ++
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~-~~is~~ef~YPlLQaaDil~l~~~~~~ 186 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIE-TGISFTEFSYMMLQAYDFLRLYETEGC 186 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTT-TCCCHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccC-CCcchHHHHHHHHHHHHHHHHhccCCC
Confidence 8899999998444 444445565654444444445555544444443 678999999999999999999 99
Q ss_pred ceeccccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceee
Q 015067 212 DFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 290 (413)
Q Consensus 212 dlVpvG~DQ~~hleLaRdiA~r~-n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~ 290 (413)
|+||||.||++|++++||+|+|| |+ + .|..+.. ++||++ || +|||||. +|+|+
T Consensus 187 ~i~~gG~DQ~~ni~lgrdlarr~~~~--~----------------~~~~lt~---pll~~l-dG-~KMSKS~---~naI~ 240 (419)
T 2ts1_A 187 RLQIGGSDQWGNITAGLELIRKTKGE--A----------------RAFGLTI---PLVTKA-DG-TKFGKTE---SGTIW 240 (419)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SCCCB
T ss_pred cEEeccHHHHHHHHHHHHHHHHhcCC--C----------------Ceeeccc---ccccCC-Cc-ccccCCC---CCeEe
Confidence 99999999999999999999999 73 1 2333333 488998 78 6999997 47999
Q ss_pred cCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhhc
Q 015067 291 LLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHLH 366 (413)
Q Consensus 291 L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~Lae~I~~~L~ 366 (413)
|+| +|+++++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||++|+++++
T Consensus 241 L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~h 307 (419)
T 2ts1_A 241 LDKEKTSPYEFYQFWINTD-------------DRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307 (419)
T ss_dssp SSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999953 235667777777777789999999997 56899999999999999999
Q ss_pred hHHHHHHHH
Q 015067 367 PIQVRYEEI 375 (413)
Q Consensus 367 pirer~~~~ 375 (413)
+.++..+..
T Consensus 308 g~~~~~~a~ 316 (419)
T 2ts1_A 308 GEEALRQAI 316 (419)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988766554
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3.1e-52 Score=428.01 Aligned_cols=254 Identities=14% Similarity=0.143 Sum_probs=217.7
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (413)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 144 (413)
.++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+|+ |. +++++++|+..+.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999996 7899999997 899999999999997 43 899999999999999999
Q ss_pred cCCCC---CC------cchh-cchhHHHHH--hccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcc---
Q 015067 145 CGIDN---SK------SHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 209 (413)
Q Consensus 145 ~GiDp---~k------S~i~-~~~el~w~L--~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 209 (413)
+ ||| ++ |+.. .++++.|+. ++.+++++|.++.+||.+. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 888 77 4443 456778875 7999999999999998654 2 678999999999999999999
Q ss_pred -ccceeccccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 210 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 210 -~adlVpvG~DQ~~hleLaRdiA~r~-n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
++|+||||.||++|++++||+|+|| |+ ..|..+.. ++||++ || +|||||+ +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 12333333 489999 78 6999998 47
Q ss_pred eeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHH
Q 015067 288 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 363 (413)
Q Consensus 288 ~I~L~D---~pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~~~~~~eel~~~~~-~~~~~dlK~~Lae~I~~ 363 (413)
+|+|+| +|++|++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||++|++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~ 305 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTK 305 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999 9999999999953 235667777777777789999999997 45899999999999999
Q ss_pred hhchHHHHHHHH
Q 015067 364 HLHPIQVRYEEI 375 (413)
Q Consensus 364 ~L~pirer~~~~ 375 (413)
++++.++..+..
T Consensus 306 ~~hg~~~~~~a~ 317 (420)
T 1jil_A 306 FIHGEDALNDAI 317 (420)
T ss_dssp HHHCHHHHHHHH
T ss_pred HHcCHHHHHHHH
Confidence 999987665543
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.1e-46 Score=404.54 Aligned_cols=258 Identities=15% Similarity=0.149 Sum_probs=207.0
Q ss_pred CCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhh---cccEEEEEecceeecC-C--CCHHHHHHHHHHHHHHHHH
Q 015067 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN---SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLA 144 (413)
Q Consensus 71 ~~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~---~~~~~i~IaDlhA~t~-~--~~~~~i~~~~~~~~a~~lA 144 (413)
.+++...+..|+|+- |||.+||||++++++.|.++|+ .++++|+||||||+++ + .+++++++++.+++++|+|
T Consensus 375 ~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~a 453 (690)
T 3p0j_A 375 LPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKA 453 (690)
T ss_dssp -CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344445677899998 9999999999997654666544 3689999999999998 3 5899999999999999999
Q ss_pred cCCCCCC-----cchhcc-hhHHHH----HhccccHHHHhhhhhHHHhHHhhCCCCccchhhhhhHHHHHhhhcccccee
Q 015067 145 CGIDNSK-----SHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 214 (413)
Q Consensus 145 ~GiDp~k-----S~i~~~-~el~w~----L~~~~~i~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adlV 214 (413)
+|+||+. |+.... .+.+|. ++..++++|+.+. .+.+++++|+|+||+||||||+.+++|++
T Consensus 454 lG~d~k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~---------~~~~~~~i~~~~YPlmQaaDi~~l~aDi~ 524 (690)
T 3p0j_A 454 YGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEEL---------YGGEVRNAGQVIAALMRVATALMLSVSHV 524 (690)
T ss_dssp HTCCTTSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHH---------TTSCCSSHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cCCCcCeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHH---------hCCCCcchHHHHHHHHHHhhhhccCCCEE
Confidence 9999843 333322 135664 4666777766654 23477899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 015067 215 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 294 (413)
Q Consensus 215 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D~ 294 (413)
|||.||++|++|+||+|++++ .|..++. .++|+|+++.++||||++ +|+|+|+|+
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D~ 579 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDDN 579 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------CCSCBTTCC
T ss_pred ecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--CCeeeccCC
Confidence 999999999999999999843 2444443 489999777666667765 699999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc-------------------CCCCHHHHHHHHh--cCCcchH
Q 015067 295 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------------SGKTKGEVAEECQ--NMNWGTF 353 (413)
Q Consensus 295 pe~I~~KI~kA~Td~~~~i~~~~~~rpev~~ll~i~~~~-------------------~~~~~eel~~~~~--~~~~~dl 353 (413)
|++|++||++|||++ + ++.|++++|++++ +.++++||+++|. .+||+||
T Consensus 580 ~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dl 649 (690)
T 3p0j_A 580 DMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADL 649 (690)
T ss_dssp HHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHH
Confidence 999999999999865 2 4678999999876 1369999999997 5899999
Q ss_pred HHHHHHHHHHhhchHHHHHH
Q 015067 354 KPLLTDALIEHLHPIQVRYE 373 (413)
Q Consensus 354 K~~Lae~I~~~L~pirer~~ 373 (413)
|++|+++|+++|+|+|++|+
T Consensus 650 K~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 650 KAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.89 E-value=1e-09 Score=107.86 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=96.9
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC-----cchhc-c
Q 015067 85 VQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-----SHVRA-H 157 (413)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k-----S~i~~-~ 157 (413)
=.|||.+||||+..++.+|...+.. +.+++-|-|. + +.....+....+..++.++|++++. |+-.. .
T Consensus 12 PsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D--~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y 85 (298)
T 1nzj_A 12 PSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----D--PPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAY 85 (298)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----C--GGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----C--chhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHH
Confidence 3567999999999999999877664 4556667773 2 1233456778899999999999986 33211 1
Q ss_pred hhH-------HHHHhccccHHHHhhhhh-HHHhHHh-----------hC-C------CCccchhhhhhH-HHHHhhhccc
Q 015067 158 VEL-------MWLLSSATPIGWLNKMIQ-FKEKSHK-----------AG-G------ENVGVALLTYPV-LMASDILLYQ 210 (413)
Q Consensus 158 ~el-------~w~L~~~~~i~~l~r~~~-~k~~~~~-----------~~-~------~~~~~g~l~YPv-LQAADIl~~~ 210 (413)
.++ .+.+.|.++-.+|+++-. |....+. +. . +..-.|.+.++. ....|.++++
T Consensus 86 ~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R 165 (298)
T 1nzj_A 86 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR 165 (298)
T ss_dssp HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEEC
Confidence 111 112568888888876411 1000000 00 0 011234455554 4566777777
Q ss_pred cceecc-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccC
Q 015067 211 SDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 271 (413)
Q Consensus 211 adlVpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL 271 (413)
+|-.|. |.|+..+...-..+.+-++ ++.|...+.+ +|.+.
T Consensus 166 ~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~p---ll~~~ 224 (298)
T 1nzj_A 166 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLP---LALNP 224 (298)
T ss_dssp TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEEC---BCCC-
T ss_pred CCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEee---eeECC
Confidence 666666 9999887766666656544 4567666554 77787
Q ss_pred CCCCCccccCCC
Q 015067 272 TDGLSKMSKSAP 283 (413)
Q Consensus 272 ~dg~~KMSKS~p 283 (413)
+| +||||++.
T Consensus 225 -~g-~KLSKR~g 234 (298)
T 1nzj_A 225 -QG-AKLSKQNH 234 (298)
T ss_dssp ------------
T ss_pred -CC-CcccccCC
Confidence 66 69999974
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.85 E-value=7.1e-09 Score=108.36 Aligned_cols=192 Identities=18% Similarity=0.190 Sum_probs=123.5
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcccEEEE-EecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-------chhc
Q 015067 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKS-------HVRA 156 (413)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~-IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS-------~i~~ 156 (413)
=.|||.+||||+..++.+|...+..+-.+++ |-|. ++ .....+....+..++..+||+++.. .+..
T Consensus 13 PsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 3567999999999999999877666556666 7775 21 1334457778888999999998761 1222
Q ss_pred chh---HH-----------HHHhccccHHHHhhhh---------hHHHhH---------H--hhCCC----------Cc-
Q 015067 157 HVE---LM-----------WLLSSATPIGWLNKMI---------QFKEKS---------H--KAGGE----------NV- 191 (413)
Q Consensus 157 ~~e---l~-----------w~L~~~~~i~~l~r~~---------~~k~~~---------~--~~~~~----------~~- 191 (413)
.++ .+ ..+.|.++-.+|+.+- .|.... + ..|.. .+
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 222 11 1256899988886542 111100 0 00100 00
Q ss_pred ----cchhhhhhHHHHHhhhccccceecc-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCC
Q 015067 192 ----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGG 248 (413)
Q Consensus 192 ----~~g~l~YPvLQAADIl~~~adlVpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~ 248 (413)
-.|.+.|+.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +| .|
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g------~g- 238 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG------VA- 238 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT------SC-
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc------CC-
Confidence 1244666666667777766666666 99999999999999999976 53 11
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 249 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 249 ~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
++.|+..+.+ +|.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 239 -----~~~P~~~h~p---lil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 239 -----ERIPKFAHLP---TVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp -----CCCCEEEEEC---CEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred -----CCCCeEEEee---eeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 5667766654 77886 66 69999974 334433 57777777665
No 39
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.67 E-value=3.3e-08 Score=103.18 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=116.5
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKS----- 152 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS----- 152 (413)
.++=..=.|||.+||||+..++.+|...+.. +.+++-|-|. ++ .....+....+..++..+||+++..
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 3444455678999999999999999876654 4566666664 21 1334456778888999999998762
Q ss_pred -----chhcchhHHH-----H------HhccccHHHHhhh--hhHHHh--HHhhC---------C-CCc-----cchhhh
Q 015067 153 -----HVRAHVELMW-----L------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-ENV-----GVALLT 197 (413)
Q Consensus 153 -----~i~~~~el~w-----~------L~~~~~i~~l~r~--~~~k~~--~~~~~---------~-~~~-----~~g~l~ 197 (413)
.-.++.+.+. + +.|.++-.+|+++ +.|... ....| + ..+ -.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 1112222111 1 3477766666542 111100 00001 0 000 123344
Q ss_pred hhHHHHHhhhcc-------------------ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 015067 198 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 258 (413)
Q Consensus 198 YPvLQAADIl~~-------------------~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~ 258 (413)
++.-+.-|.+++ +.++|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 444444444444 45556669999999988888888765 56677
Q ss_pred cccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 259 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 259 ~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
..+.+ +|.+. +| +||||++.+ +.|.+ .|+.|.+-+..
T Consensus 242 f~H~p---li~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 242 FMHIP---LILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp EEEEC---CEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEe---eeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 66654 78887 67 699999742 44443 68888887766
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.59 E-value=3.3e-08 Score=102.66 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=118.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcc---------hh
Q 015067 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSH---------VR 155 (413)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS~---------i~ 155 (413)
.|||.+||||+..++.+|...+.. +.+++=|-|. ++ .....+....+..++..+|++++..- .+
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 578999999999999999866654 4455555654 21 12233467788889999999987621 11
Q ss_pred -cchhHHH-----------HHhccccHHHHhhhh-------------hHHHhHHh--hCC---------C--Cc-----c
Q 015067 156 -AHVELMW-----------LLSSATPIGWLNKMI-------------QFKEKSHK--AGG---------E--NV-----G 192 (413)
Q Consensus 156 -~~~el~w-----------~L~~~~~i~~l~r~~-------------~~k~~~~~--~~~---------~--~~-----~ 192 (413)
++.+.+. .+.|.++-.+|.++- +..+..+. .|. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 1112111 145888888776532 22221111 110 0 01 1
Q ss_pred chhhhhhHHHHHhhhccccceecc-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 015067 193 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 253 (413)
Q Consensus 193 ~g~l~YPvLQAADIl~~~adlVpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~ 253 (413)
.|.+.+|..+.-|.+++++|..|. |.|+..|...-.-+.+.++
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 255777777778888887777776 9999999998888888764
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
++.|+..+. ++|.+. +| +||||++.+ ..|.+ .|+.|.+-+..
T Consensus 225 ~~~p~~~h~---~li~~~-~g-~klSKR~g~----~~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 WEAPRFYHM---PLLRNP-DK-TKISKRKSH----TSLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CCCCEEEEE---CCCBCT-TS-CBCCTTTSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeEEEe---eeeeCC-CC-Cccccccch----hhHHHHHHCCCCHHHHHHHHHH
Confidence 455765554 377776 56 699999853 23332 58888877765
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.39 E-value=2.3e-06 Score=89.33 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=111.5
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC-----cc-hhc
Q 015067 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-----SH-VRA 156 (413)
Q Consensus 84 Gi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k-----S~-i~~ 156 (413)
.=.|||.+||||...++.+|...+.. +.+++=|-|.- + .....+.+..+..++..+||+++. |+ +..
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 34577999999999999999765543 45666666652 1 122355778888899999999875 22 111
Q ss_pred chhHH-------HHHhccccHHHHhhhh----------hHHH---------hHH--hhCCC-----Ccc-----------
Q 015067 157 HVELM-------WLLSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG----------- 192 (413)
Q Consensus 157 ~~el~-------w~L~~~~~i~~l~r~~----------~~k~---------~~~--~~~~~-----~~~----------- 192 (413)
..++. ..+.|.++-.+|+.+- .|.. ... ..|.. .++
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v 160 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLV 160 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETT
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecc
Confidence 11111 1134777776665421 1110 000 00100 000
Q ss_pred chhhhhhHHHH-Hhhh------------------------ccccceeccccchHHHHHHHHHHHHHHhhhhCCccccccC
Q 015067 193 VALLTYPVLMA-SDIL------------------------LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 247 (413)
Q Consensus 193 ~g~l~YPvLQA-ADIl------------------------~~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g 247 (413)
.|.+.++.-.. .|.+ ..+.|+|..|.|+..+-..-..|.+.|+
T Consensus 161 ~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg------------ 228 (492)
T 2cfo_A 161 RGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG------------ 228 (492)
T ss_dssp TEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT------------
T ss_pred eeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC------------
Confidence 12233333333 3444 4456677799999999888877777654
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 248 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 248 ~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
++.|...+.+ +|.+. +| +|||||+.+ +.|.+ .|+.|..-+..
T Consensus 229 ------~~~P~~~H~p---lil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 ------ATPPNFAHTP---LILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp ------CCCCEEEEEC---CEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred ------CCCceEEEee---eEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 4567666554 77887 67 699999853 23332 58888887766
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.38 E-value=5.2e-08 Score=103.84 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=113.3
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKS----- 152 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~kS----- 152 (413)
.++=..=.|||.+||||+.+++.+|.-.+.. +++++-|.| |++. .........+..++..+|++++..
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieD----tD~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIED----TDTE--RSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCC----CCSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecC----cChh--hccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 4444456788999999999999999765543 567777777 3322 234456677888899999998752
Q ss_pred -----chhcchhHH-----H------HHhccccHHHHhhh--hhHHHh--HHhhC---------C-C-----Cccchhhh
Q 015067 153 -----HVRAHVELM-----W------LLSSATPIGWLNKM--IQFKEK--SHKAG---------G-E-----NVGVALLT 197 (413)
Q Consensus 153 -----~i~~~~el~-----w------~L~~~~~i~~l~r~--~~~k~~--~~~~~---------~-~-----~~~~g~l~ 197 (413)
.-.++.+.+ . .+.|.++-.+|+++ +.|... ....| + . ..-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 111122211 1 13466665555432 001100 00000 0 0 01123333
Q ss_pred hhHHHHHhhhcc-------------------ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 015067 198 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 258 (413)
Q Consensus 198 YPvLQAADIl~~-------------------~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~ 258 (413)
+|.-+.-|.+++ +.++|.-|.|+..|...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 333333344443 45666669999999988887776643 45576
Q ss_pred cccCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 015067 259 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 304 (413)
Q Consensus 259 ~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~k 304 (413)
..+. ++|.+. +| +||||++.+ +.|.+ .|+.|.+-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 5554 377887 66 699999842 34433 68888887766
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.82 E-value=0.00036 Score=72.59 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=44.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.+....-.|||.+||||.-+++.+|.--... +..++=|-|.- + ..........+..++..+|++++.
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD----~--~r~~~~~~~~I~~~l~wlGl~~de 81 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD----L--ERSEREYEEKLMESLRWLGLLWDE 81 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS----C--CSGGGHHHHHHHHHHHHHTCCCSB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----c--cccHHHHHHHHHHHHHHcCCCCCC
Confidence 4667788899999999999999898644333 33333333322 1 123345666778888889998764
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.68 E-value=0.00026 Score=73.73 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=46.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+.++=..=.|||.+||||+..++.+|...+...-.+++--|. |++ .....+....+..++..+|++++.
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieD---tD~--~R~~~~~~~~i~~dl~wlGl~~d~ 93 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIED---TDV--ERSSQEAVDAILEGMAWLGLDYDE 93 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC---CCG--GGCCHHHHHHHHHHHHHTTCCCSE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCC---CCc--ccccHHHHHHHHHHHHHcCCCCCC
Confidence 344444556679999999999999997655543344443332 221 123456777888899999999975
No 45
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.10 E-value=0.0017 Score=67.25 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=44.3
Q ss_pred CceEEEecCC--CCcchhhhHHHHHHH--HHHHhh--cccEEEEE-ecceeecC-------CCCHH-HHHHHHHHHHHHH
Q 015067 78 KKRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIY 142 (413)
Q Consensus 78 ~~~i~tGi~P--TG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~-~i~~~~~~~~a~~ 142 (413)
+..+++|--| +|.+||||....+.. +.++++ +++|++.. .|.|..-. ..++. -.+++...+..++
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 82 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAW 82 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4456677666 799999998876522 334443 35665432 34332211 12343 3444566788889
Q ss_pred HHcCCCCCC
Q 015067 143 LACGIDNSK 151 (413)
Q Consensus 143 lA~GiDp~k 151 (413)
.++|++++.
T Consensus 83 ~~lgi~~d~ 91 (500)
T 2d5b_A 83 DLLGIAYDD 91 (500)
T ss_dssp HHTTCCCSE
T ss_pred HHhCCcCCC
Confidence 999998864
No 46
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.01 E-value=0.0012 Score=68.40 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=44.6
Q ss_pred ceEEEecC--CCCcchhhhHHHHHHH--HHHHhh--cccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 015067 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (413)
..+++|-- |||.+||||....+.. +.++++ +++|++.- .|-|..-. ..++ +-.+++...+..++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45556655 5699999998876522 344443 35654432 34443321 1234 345566778888999
Q ss_pred HcCCCCCC
Q 015067 144 ACGIDNSK 151 (413)
Q Consensus 144 A~GiDp~k 151 (413)
++|++++.
T Consensus 86 ~lgi~~d~ 93 (497)
T 2csx_A 86 FLKIEYTK 93 (497)
T ss_dssp HTTCCCSE
T ss_pred HhCCcCCC
Confidence 99998875
No 47
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.98 E-value=0.0019 Score=67.64 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=44.6
Q ss_pred ceEEEecCC--CCcchhhhHHHHHH--HHHHHhhc--ccEEE-EEecceeecC-------CCCHH-HHHHHHHHHHHHHH
Q 015067 79 KRIVSGVQP--TGSIHLGNYLGAIK--NWIALQNS--YETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (413)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~i~--~~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~l 143 (413)
...++|-=| ||.+||||..+++. -+.++++. ++|++ +-.|.|..-. ..+++ -.++.......++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445566554 59999999887652 24444443 67644 4456654321 12443 34455667788888
Q ss_pred HcCCCCCC
Q 015067 144 ACGIDNSK 151 (413)
Q Consensus 144 A~GiDp~k 151 (413)
++|+.++.
T Consensus 106 ~lgi~~d~ 113 (536)
T 4dlp_A 106 VLNSSNDD 113 (536)
T ss_dssp HTTCCCSE
T ss_pred HcCCCCCc
Confidence 99998874
No 48
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=96.70 E-value=0.17 Score=52.18 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred ceEE-EecCCCCcchhhhHHHHHH--HHHHHhh--cccEEEEE--eccee-ec-----CCCCHHH-HHHHHHHHHHHHHH
Q 015067 79 KRIV-SGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI--VDLHA-IT-----LPYDTQQ-LSKATRETAAIYLA 144 (413)
Q Consensus 79 ~~i~-tGi~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~I--aDlhA-~t-----~~~~~~~-i~~~~~~~~a~~lA 144 (413)
.++| +|--|.|.+||||.-.++. -+.++++ .++|++.. .|+=. +. ...++.+ .+.....+..++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444 5544449999999876652 2333333 36765542 33311 00 1124433 34556678888999
Q ss_pred cCCCC
Q 015067 145 CGIDN 149 (413)
Q Consensus 145 ~GiDp 149 (413)
+|+.+
T Consensus 103 LgI~~ 107 (461)
T 1li5_A 103 LNILR 107 (461)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 99985
No 49
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.62 E-value=0.046 Score=57.12 Aligned_cols=52 Identities=25% Similarity=0.184 Sum_probs=39.9
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCC
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
.+.++|.-|.|...+--.-.-|.+-|+ ++.|...+.+ .|.+- +| +|+||.+.
T Consensus 228 mgITHViRG~D~l~sTp~q~~l~~alg------------------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 228 MKITHVLRAQEWVSSGPLHVLLYKAFK------------------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp TTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred cCCceeccccccccccHHHHHHHHHcC------------------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 478999999999888776666666554 6778877764 77776 66 79999974
No 50
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.59 E-value=0.0083 Score=63.29 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=42.3
Q ss_pred EEEecCC--CCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 81 i~tGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+.+=|.| ||.+||||...++.+|...+.. +.+++=|-|. + +.....+.+..+..++..+|++++.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt----D--~~R~~~e~~~~I~edL~wLGl~wd~ 164 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT----D--PRRVDPEAYDMIPADLEWLGVEWDE 164 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----C--GGGCCTTHHHHHHHHHHHHTCCCSE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----C--cccccHHHHHHHHHHHHHcCCCCCC
Confidence 4455554 5999999999998888644332 3344444443 1 1122335677888888999999965
No 51
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.01 E-value=0.15 Score=52.61 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=43.1
Q ss_pred ceE-EEecCCCCcchhhhHHHHHHH--HHHHhh--cccEEEEE-ecceee--cC-----CCCH-HHHHHHHHHHHHHHHH
Q 015067 79 KRI-VSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI--TL-----PYDT-QQLSKATRETAAIYLA 144 (413)
Q Consensus 79 ~~i-~tGi~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~--t~-----~~~~-~~i~~~~~~~~a~~lA 144 (413)
+++ ++|.-|.|.+||||....+.. +.++++ .++|.+.. .|.|.- .. ..++ +..++++..+..++.+
T Consensus 26 v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~ 105 (462)
T 3tqo_A 26 VKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKA 105 (462)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 444 478888899999997765411 223322 36765443 333321 10 1244 3345566788888999
Q ss_pred cCCCCCC
Q 015067 145 CGIDNSK 151 (413)
Q Consensus 145 ~GiDp~k 151 (413)
+|+.++.
T Consensus 106 LgI~~d~ 112 (462)
T 3tqo_A 106 LRVLSPD 112 (462)
T ss_dssp HTCCCCS
T ss_pred cCCCCCc
Confidence 9998753
No 52
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=95.61 E-value=0.0042 Score=66.06 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=27.5
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEE--EEecc
Q 015067 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLF--FIVDL 119 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i--~IaDl 119 (413)
.-|+|--|+|.+||||.-+++ .-+.++.+. ++|++ -|.||
T Consensus 107 ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 107 VEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 336888899999999987765 335555553 67654 46776
No 53
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=93.03 E-value=0.085 Score=56.49 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=26.1
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEE--EEecc
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLF--FIVDL 119 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i--~IaDl 119 (413)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|++ -|.||
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 6899999999999977654 223344343 67643 56776
No 54
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=90.65 E-value=0.54 Score=48.77 Aligned_cols=74 Identities=8% Similarity=-0.014 Sum_probs=46.5
Q ss_pred CceEEEe-cCCCCcchhhhHHHHHH--HHHHHhh--cccEEEEE-ecceeec--C-----CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHAIT--L-----PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~I-aDlhA~t--~-----~~~~-~~i~~~~~~~~a~~l 143 (413)
++.|-|. --++|.+||||.++.+. -+.+++. +++|++.- .|-|.+- . ..++ +-.+++...+..++.
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455554 35789999999887652 2333433 36776544 4545432 1 2355 455667778888999
Q ss_pred HcCCCCCC
Q 015067 144 ACGIDNSK 151 (413)
Q Consensus 144 A~GiDp~k 151 (413)
++|++.+.
T Consensus 90 ~lgi~~D~ 97 (542)
T 3u1f_A 90 QMDYSIDY 97 (542)
T ss_dssp HHTCCCSE
T ss_pred HhCCccCc
Confidence 99998764
No 55
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=89.48 E-value=0.74 Score=48.19 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=44.7
Q ss_pred CceEEEe-cCCCCcchhhhHHHHHHH--HHHHhh--cccEEE-EEecceeecC-------CCCHH-HHHHHHHHHHHHHH
Q 015067 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i-~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~l 143 (413)
++.|.++ .-|||.+||||....+.. +.++++ .++|.+ .-.|.|..-. ..+++ -.++.......++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 445599999998876532 333433 367654 4455554321 22443 34555667888899
Q ss_pred HcCCCCCC
Q 015067 144 ACGIDNSK 151 (413)
Q Consensus 144 A~GiDp~k 151 (413)
++|++++.
T Consensus 99 ~lgi~~d~ 106 (560)
T 3h99_A 99 GFNISYDN 106 (560)
T ss_dssp HTTCCCSE
T ss_pred HcCCCCCC
Confidence 99999875
No 56
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=86.46 E-value=0.67 Score=48.22 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=45.8
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHH--HHhh--cccE-EEEEecceeecC--CC------------C-----------H
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWI--ALQN--SYET-LFFIVDLHAITL--PY------------D-----------T 128 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~--~lQ~--~~~~-~i~IaDlhA~t~--~~------------~-----------~ 128 (413)
.++-||--|||.+||||.-.++..++ ++.. .+++ +++-.|.|--.. |. + .
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 45557999999999999888875533 1222 2565 344356664111 00 1 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Q 015067 129 QQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 129 ~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
+-.+++...+..++..+||+++.
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D~ 124 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVDL 124 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCceE
Confidence 22345677888888999999864
No 57
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.38 E-value=1.7 Score=45.51 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=45.3
Q ss_pred eEEEec--CCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEecceeecC-------CCCHH-HHHHHHHHHHHHHHH
Q 015067 80 RIVSGV--QPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLA 144 (413)
Q Consensus 80 ~i~tGi--~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~lA 144 (413)
.++++- -|||.+||||..+.+ .-+.++++. ++|+ ++-.|.|..-. ..+++ -.++.......++..
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344443 477999999987765 234555543 6764 44466665321 12453 445556678888899
Q ss_pred cCCCCCC
Q 015067 145 CGIDNSK 151 (413)
Q Consensus 145 ~GiDp~k 151 (413)
+|+..+.
T Consensus 108 lgi~~D~ 114 (564)
T 3kfl_A 108 MNYDMNY 114 (564)
T ss_dssp TTCCCSE
T ss_pred cCCCCCc
Confidence 9998874
No 58
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=86.28 E-value=1.1 Score=47.31 Aligned_cols=67 Identities=13% Similarity=-0.001 Sum_probs=44.0
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.+.=-+=.|||.+||||.-.++.+|...+.. +.+++=|-|. + +.....+....+..++..+|++++.
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT----D--~~R~~~e~~~~I~edL~wLGl~wde 94 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT----N--PVKEDIEYVESIKNDVEWLGFHWSG 94 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----C--GGGCCHHHHHHHHHHHHHTTCCCSS
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----C--chhcCHHHHHHHHHHHHHcCCCCCC
Confidence 3444566677999999999998888654332 3344444443 1 1123445677888889999999853
No 59
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=85.68 E-value=0.23 Score=51.45 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=39.5
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhh--cccEEEEE-ecceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCC
Q 015067 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 86 ~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~a~~lA~GiDp~k 151 (413)
-|+|.+||||....+ .-+.++++ .++|.++. .|-|..-. ..++.+ .+++...+..++..+|+.++.
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~ 100 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDR 100 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 357999999988765 22344443 35665432 44443311 123433 445667788889999998874
No 60
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=85.05 E-value=1 Score=49.67 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=42.5
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 015067 83 SGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 151 (413)
Q Consensus 83 tGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GiDp~k 151 (413)
.+=.|||.+||||.-.++.+|...... +.+++=|-|. ++. ....+....+..++..+||+++.
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde 134 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE 134 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC
Confidence 366677999999999998898654432 3344444443 221 23446777888888999999853
No 61
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=84.99 E-value=0.27 Score=51.71 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=34.6
Q ss_pred cccceeccccchHHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCC
Q 015067 209 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 285 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleL---aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~ 285 (413)
+.+|+..+|.||..++.+ ++-++ .| ++.|..++.. ..+ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 356899999999884322 22221 23 3455555543 255 33 66 6999997
Q ss_pred CceeecCC
Q 015067 286 QSRINLLD 293 (413)
Q Consensus 286 ~s~I~L~D 293 (413)
+|.|.+.|
T Consensus 345 GNvV~p~d 352 (564)
T 3kfl_A 345 GNAFDPVE 352 (564)
T ss_dssp TCCCCHHH
T ss_pred CCCCCHHH
Confidence 67886543
No 62
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=84.54 E-value=1.7 Score=47.17 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=48.6
Q ss_pred CceEEEec-CCCCcchhhhHHH-HH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHH
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg-~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (413)
++.|.+++ -|+|.+||||..+ .+ .-+.+++.. ++|++.. .|-|.+-. ..++ +-..++......+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666666 5679999999987 33 335555554 6775444 56664421 2355 34455667888889
Q ss_pred HHcCCCCCC
Q 015067 143 LACGIDNSK 151 (413)
Q Consensus 143 lA~GiDp~k 151 (413)
.++|++.+.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999998875
No 63
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=81.94 E-value=0.5 Score=49.08 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=32.2
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
-+|+...|.||..++.+- -.|.-+. .| .+.|..++.. ..+ .. +| +|||||. +|.|
T Consensus 278 p~d~~~~G~D~~~fh~~~-~~a~l~~--~g--------------~~~~~~v~~h--g~l-~~-~G-~KMSKSl---GNvi 332 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIY-WPAFLLS--AG--------------LPLPKKIVAH--GWW-TK-DR-KKISKSL---GNVF 332 (542)
T ss_dssp SCSEEEEEGGGHHHHHTH-HHHHHHH--HT--------------CCCCSCEEEE--CCC-EE-TT-BCCBTTT---TBCC
T ss_pred cceEEEecccccccccch-hHHHHHh--hc--------------ccccceeccc--cce-ec-CC-ceecccc---CCCC
Confidence 368999999997754221 1111111 12 3445555543 133 22 56 7999997 5777
Q ss_pred ecC
Q 015067 290 NLL 292 (413)
Q Consensus 290 ~L~ 292 (413)
...
T Consensus 333 ~p~ 335 (542)
T 3u1f_A 333 DPV 335 (542)
T ss_dssp CHH
T ss_pred Chh
Confidence 643
No 64
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=81.70 E-value=0.55 Score=51.47 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=35.4
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
+-+|+..+|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHH---HcCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 76654322221 1221 1234444432 23332 56 7999997 67
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|.+.|
T Consensus 658 vv~p~d 663 (810)
T 1wkb_A 658 VLNFID 663 (810)
T ss_dssp CCBHHH
T ss_pred cCCHHH
Confidence 887654
No 65
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=79.51 E-value=0.74 Score=51.61 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=40.0
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
|-+|+..+|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999964 65554222211 1221 1224444433 24432 56 7999997 67
Q ss_pred eeecCC-----CHHHHHHHhh
Q 015067 288 RINLLD-----PKDVIANKIK 303 (413)
Q Consensus 288 ~I~L~D-----~pe~I~~KI~ 303 (413)
.|.+.| .++.++=-+.
T Consensus 658 vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHH
Confidence 887643 4555554443
No 66
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.78 E-value=0.62 Score=51.65 Aligned_cols=61 Identities=28% Similarity=0.370 Sum_probs=37.3
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
|-+|+...|.||.. +=++|.++.-.. ..| ..| ..++.. ..+... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g---------------~~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMG---------------ERPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSS---------------SCSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcC---------------CCcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 46899999999874 445666665432 223 124 223322 255544 66 7999997 57
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|...|
T Consensus 536 vIdP~d 541 (862)
T 1gax_A 536 VIDPLE 541 (862)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 777543
No 67
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=77.51 E-value=0.78 Score=46.34 Aligned_cols=72 Identities=15% Similarity=-0.032 Sum_probs=43.7
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhh--cccEE-EEEecceeec--C-----CCCHH-HHHHHHHHHHHHHHHcC
Q 015067 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAIT--L-----PYDTQ-QLSKATRETAAIYLACG 146 (413)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~-i~IaDlhA~t--~-----~~~~~-~i~~~~~~~~a~~lA~G 146 (413)
..++|.-|.|.+||||..+.+ .-+.++++ .++|. ++-.|.|..- . ..++. -.+++...+..++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 335666666999999987665 22334433 36764 4446666421 1 12443 34455667888899999
Q ss_pred CC-CCC
Q 015067 147 ID-NSK 151 (413)
Q Consensus 147 iD-p~k 151 (413)
+. ++.
T Consensus 122 i~~~d~ 127 (414)
T 3c8z_A 122 VLPPHD 127 (414)
T ss_dssp CCCCSE
T ss_pred CCCCcc
Confidence 98 654
No 68
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.26 E-value=1 Score=49.45 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=38.0
Q ss_pred cccceeccccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCc
Q 015067 209 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 287 (413)
Q Consensus 209 ~~adlVpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s 287 (413)
+-+|+...|.||.. |+.....++.-+ +|. ..+..++.. ..+... +| +|||||. +|
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~---~~~--------------~pf~~v~~h--g~vl~~-~G-~KMSKS~---GN 598 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVML---FGS--------------IAFKNVICH--GLILDE-KG-QKMSKSK---GN 598 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHH---HSS--------------CSBSEEEEE--CCEECT-TS-SCCCTTT---TC
T ss_pred CCcccccchhhhhccHHHHHHHHHHHh---cCC--------------CCcceEEEE--eeEECC-CC-CCCCccC---CC
Confidence 46899999999963 432222222221 231 112333322 244443 56 7999997 57
Q ss_pred eeecCC-----CHHHHHHHhhh
Q 015067 288 RINLLD-----PKDVIANKIKR 304 (413)
Q Consensus 288 ~I~L~D-----~pe~I~~KI~k 304 (413)
.|.+.| .++.++=-+..
T Consensus 599 vV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 599 VVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp CCCHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCHHHHHHHHHh
Confidence 777543 44555444443
No 69
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=76.10 E-value=1.2 Score=49.72 Aligned_cols=59 Identities=31% Similarity=0.312 Sum_probs=34.7
Q ss_pred ccccceeccccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCccccCCC
Q 015067 208 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 283 (413)
Q Consensus 208 ~~~adlVpvG~DQ~---~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~i~sL~dg~~KMSKS~p 283 (413)
.+-+|+...|.||. -|-.+...++- .| ..| ..++.. .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g---------------~~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RG---------------VSPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HS---------------SCSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hC---------------CCcccceeEe--eeEEcC-CC-cCccccc-
Confidence 36689999999996 34444444431 23 123 233322 255543 56 7999997
Q ss_pred CCCceeecCC
Q 015067 284 SDQSRINLLD 293 (413)
Q Consensus 284 ~~~s~I~L~D 293 (413)
+|.|.+.|
T Consensus 601 --GNvV~P~d 608 (917)
T 1ffy_A 601 --GNVIVPDQ 608 (917)
T ss_dssp --SCCCCHHH
T ss_pred --CCcCChHH
Confidence 67886543
No 70
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=75.93 E-value=0.4 Score=49.46 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=25.4
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEecc
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDL 119 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDl 119 (413)
|+.--|||.+|+||.-+++ .-..++.+. ++| ...|.||
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 5788899999999977654 223344443 555 4567775
No 71
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=74.64 E-value=1 Score=47.07 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=23.9
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhh
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKR 304 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D-----~pe~I~~KI~k 304 (413)
++.|..++.. ..|. + +| +|||||. +|.|.+.| .++.++=-+.+
T Consensus 327 ~~~p~~v~~h--g~v~-~-~G-~KMSKS~---GNvv~p~d~i~~~GaDalR~~ll~ 374 (560)
T 3h99_A 327 FRKPSNLFVH--GYVT-V-NG-AKMSKSR---GTFIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp BCCCSEEEEE--CCEE-E-TT-EECCTTT---TCCCBHHHHHHHSCHHHHHHHHHH
T ss_pred CCCCcEEEEE--eEEE-e-CC-eeccccC---CCcCCHHHHHHHcCcHHHHHHHHH
Confidence 4556544432 1332 2 56 7999997 57887644 34444444444
No 72
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=73.96 E-value=5.2 Score=41.21 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=32.9
Q ss_pred cccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCce
Q 015067 209 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288 (413)
Q Consensus 209 ~~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~ 288 (413)
+.+|+..+|.||...+.+ -.+|.-. ..| ++.|..++.. .+|.. +| +|||||. +|.
T Consensus 264 ~p~di~~~G~D~~~fh~~-~~~a~l~--~~g--------------~~~~~~v~~h--G~v~~--~G-~KMSKS~---GN~ 318 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTV-YWPAFLM--SAG--------------LPLPKRIFAH--GWLLN--RG-EKMSKSI---GNV 318 (524)
T ss_dssp CSCSEEEEEGGGHHHHHT-HHHHHHH--HHT--------------CCCCSCEEEE--CCEEE--CS-CSEETTT---EES
T ss_pred CCCeEEEEeechhHhHHH-HHHHHHH--HCC--------------CCCCcEEEEC--cEEEe--CC-cccCCcC---CCC
Confidence 358999999999853221 1222211 123 2334333322 24433 56 7999997 577
Q ss_pred eecCC
Q 015067 289 INLLD 293 (413)
Q Consensus 289 I~L~D 293 (413)
|.+.|
T Consensus 319 v~p~d 323 (524)
T 2x1l_A 319 VDPVN 323 (524)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 87644
No 73
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=70.43 E-value=12 Score=38.94 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=43.4
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhh--cccEEEE--Eecc---------e--eecC-----CCCH-HHHHH
Q 015067 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL---------H--AITL-----PYDT-QQLSK 133 (413)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--~~~~~lQ~--~~~~~i~--IaDl---------h--A~t~-----~~~~-~~i~~ 133 (413)
++++| +|--|.|.+||||....+ .-+.++++ .++|++. |.|+ | .+.. ..++ +..++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 34444 565555999999977654 11223322 4788766 3443 2 2222 1245 44566
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 015067 134 ATRETAAIYLACGIDNSK 151 (413)
Q Consensus 134 ~~~~~~a~~lA~GiDp~k 151 (413)
++..+..++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 777888899999998764
No 74
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=69.78 E-value=7.9 Score=42.96 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=45.8
Q ss_pred CceEEEec-CCCCcchhhhHHHHHH--HHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (413)
++.+++++ -|||.+||||..+.+. -+.+++.. ++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777776 6679999999887642 24444443 6765433 45554421 1244 334556677888899
Q ss_pred HcCCCCC
Q 015067 144 ACGIDNS 150 (413)
Q Consensus 144 A~GiDp~ 150 (413)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998765
No 75
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=67.97 E-value=8.4 Score=42.64 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=42.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEE-EEecceeec------------C--CCCH---------
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLF-FIVDLHAIT------------L--PYDT--------- 128 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i-~IaDlhA~t------------~--~~~~--------- 128 (413)
++.|++|. -|||.+|+||.+..+ .-+.+++.. +++.+ .--|-|.+- + +.+.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 46666663 468999999988654 224445443 66644 446777761 1 1111
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCC
Q 015067 129 -QQLSKATRETAAIYLACGIDNS 150 (413)
Q Consensus 129 -~~i~~~~~~~~a~~lA~GiDp~ 150 (413)
+-..++...+..++..+|+..+
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 1134455567777888897554
No 76
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=66.12 E-value=14 Score=37.05 Aligned_cols=31 Identities=26% Similarity=0.120 Sum_probs=20.0
Q ss_pred HHHhhhccccceeccccchHH-HHHHHHHHHH
Q 015067 202 MASDILLYQSDFVPVGEDQKQ-HLELTRELAE 232 (413)
Q Consensus 202 QAADIl~~~adlVpvG~DQ~~-hleLaRdiA~ 232 (413)
|+...+--..|+..+|.|+.. |++...-...
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~ 267 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAE 267 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHHH
Confidence 344444345789999999876 7766544433
No 77
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=62.25 E-value=2.9 Score=43.55 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=21.8
Q ss_pred HHHHHhhhccccceeccccch-HHHHHHHHHHHH
Q 015067 200 VLMASDILLYQSDFVPVGEDQ-KQHLELTRELAE 232 (413)
Q Consensus 200 vLQAADIl~~~adlVpvG~DQ-~~hleLaRdiA~ 232 (413)
.-|+...|--..|+..+|.|. .+|++--.-.+.
T Consensus 243 sam~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 243 AAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 345556555567999999996 567766543333
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=61.47 E-value=4 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.0
Q ss_pred cccceeccccch-HHHHHHHHHHHH
Q 015067 209 YQSDFVPVGEDQ-KQHLELTRELAE 232 (413)
Q Consensus 209 ~~adlVpvG~DQ-~~hleLaRdiA~ 232 (413)
+-+|+...|.|| .-|+-.+|-+..
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~ 554 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTK 554 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHH
Confidence 469999999999 677777776654
No 79
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=58.21 E-value=3.5 Score=42.78 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=34.4
Q ss_pred cccceeccccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCCccccCCCC
Q 015067 209 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPS 284 (413)
Q Consensus 209 ~~adlVpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~-dg~~KMSKS~p~ 284 (413)
+..++-++|.|+.. ......+|+.. .+| .+.|..++.+ +|.. . +| +|||||.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~-- 284 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK-- 284 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC-----------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC--
Confidence 34555588999877 22344566632 345 3456444433 4433 2 34 7999997
Q ss_pred CCceeecCC-----CHHHHHHHhhh
Q 015067 285 DQSRINLLD-----PKDVIANKIKR 304 (413)
Q Consensus 285 ~~s~I~L~D-----~pe~I~~KI~k 304 (413)
+|.|.+.| .|+.++.-+.+
T Consensus 285 -Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 -GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp --CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred -CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 45665443 67777777664
No 80
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=57.86 E-value=6.3 Score=43.72 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.2
Q ss_pred cccceeccccch-HHHHHHHHHHHHHH
Q 015067 209 YQSDFVPVGEDQ-KQHLELTRELAERV 234 (413)
Q Consensus 209 ~~adlVpvG~DQ-~~hleLaRdiA~r~ 234 (413)
+-+|+-.+|.|| .-|+-.+|-....+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 568999999999 66888888654443
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=55.54 E-value=14 Score=40.99 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=44.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (413)
++.+++|+ -|+|.+||||..+.+ .-+.+++.. ++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777773 445999999988764 223344443 6665433 44444321 1234 444566778888899
Q ss_pred HcCCCCC
Q 015067 144 ACGIDNS 150 (413)
Q Consensus 144 A~GiDp~ 150 (413)
.+|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998665
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=53.10 E-value=14 Score=40.21 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=25.2
Q ss_pred ceEEEec-CCCCcchhhhHHHHHH--HHHHHhhc--ccEEEEE-ecceee
Q 015067 79 KRIVSGV-QPTGSIHLGNYLGAIK--NWIALQNS--YETLFFI-VDLHAI 122 (413)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~I-aDlhA~ 122 (413)
+.|.+|. -|||.+||||.++.+. -+.+++.. ++|.+.. -|.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 4444443 3469999999987652 24444443 6665432 355544
No 83
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=49.88 E-value=3.9 Score=41.98 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=4.2
Q ss_pred eeccccchHHHHHH
Q 015067 213 FVPVGEDQKQHLEL 226 (413)
Q Consensus 213 lVpvG~DQ~~hleL 226 (413)
+||||.||++|.|-
T Consensus 236 ~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 236 RVPLPVGTGNEDAA 249 (451)
T ss_dssp CCBCC---------
T ss_pred ccccccccccchhh
Confidence 57999999999644
No 84
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=48.00 E-value=47 Score=31.44 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=57.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcc-cEEEEEecceeecC----CCCHHHHHHH--------HHHHHHHHHH
Q 015067 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKA--------TRETAAIYLA 144 (413)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~--------~~~~~a~~lA 144 (413)
+..++.||-|=-.-|=+.++-.+..|. +..+ +|.|+++|.++--+ ..++.+.++. .+.+...|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999987888999998888894 6665 69999999865432 2344433222 2355556777
Q ss_pred cCCCCCC----cchhcchhHH
Q 015067 145 CGIDNSK----SHVRAHVELM 161 (413)
Q Consensus 145 ~GiDp~k----S~i~~~~el~ 161 (413)
+|++.+. |++..+.+|.
T Consensus 107 ~g~~~~~v~~~Sd~~~~~~Y~ 127 (257)
T 3oqi_A 107 HGGNPEDIHTFSDFANQTAYR 127 (257)
T ss_dssp HTCCTTCEEETTTTTTCHHHH
T ss_pred cCCCcccceeHHHhhcCHHHH
Confidence 7888766 7777766654
No 85
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=41.27 E-value=17 Score=38.52 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=26.6
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE--EEEecc
Q 015067 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDL 119 (413)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~--i~IaDl 119 (413)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|+ .-|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 5899999999999988765 334445443 6764 456774
No 86
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=40.93 E-value=12 Score=40.89 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=28.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhh--cccEE-EEEecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETL-FFIVDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~-i~IaDlhA~ 122 (413)
++.+++|. -|||.+||||.++.+.+ +.+++. +++|. ++--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 46666776 67899999998875422 334444 36664 444666665
No 87
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=37.50 E-value=13 Score=41.50 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=42.6
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEecceeecC----------CC--CHHHHHH------
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAITL----------PY--DTQQLSK------ 133 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~-~i~IaDlhA~t~----------~~--~~~~i~~------ 133 (413)
++.+.+|. -|||.+||||.+..+.+ +.++|.. +++ +..--|-|.+-. +. +++++++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 46777777 56899999998876522 4445443 665 444567777631 11 2333332
Q ss_pred --HHHHHHHHHHHcCCC
Q 015067 134 --ATRETAAIYLACGID 148 (413)
Q Consensus 134 --~~~~~~a~~lA~GiD 148 (413)
++..+..++..+|+.
T Consensus 129 ~~~~~~~~~~~~rlG~~ 145 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVR 145 (917)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCeE
Confidence 334556677788884
No 88
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=37.02 E-value=22 Score=36.43 Aligned_cols=61 Identities=28% Similarity=0.178 Sum_probs=32.8
Q ss_pred ccee--ccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CccccCCCCCCc
Q 015067 211 SDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQS 287 (413)
Q Consensus 211 adlV--pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~-~KMSKS~p~~~s 287 (413)
.|.+ .+|.||..|+.--..+++.++ +..|..-+... .++.-..||. .|||||. ++
T Consensus 235 ~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~-g~V~l~~dG~~~KMSKr~---Gn 292 (464)
T 3fnr_A 235 YGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA-QMVSLLKDGEPYKMSKRA---GN 292 (464)
T ss_dssp CSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-CCEEEEETTEECCC---C---CS
T ss_pred CCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-eeEEecCCCcccCCcCcC---CC
Confidence 5544 799999999987777766543 22222111111 1331113553 5999997 67
Q ss_pred eeecCC
Q 015067 288 RINLLD 293 (413)
Q Consensus 288 ~I~L~D 293 (413)
.|.+.|
T Consensus 293 ~v~l~d 298 (464)
T 3fnr_A 293 FILMSD 298 (464)
T ss_dssp SCBHHH
T ss_pred CCCHHH
Confidence 887754
No 89
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=36.74 E-value=49 Score=32.03 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=42.8
Q ss_pred ccceeccccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCccccCCCCCCcee
Q 015067 210 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 289 (413)
Q Consensus 210 ~adlVpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I 289 (413)
++|..-.|..-.|.+.+-|++++.+| | |..++.- +.+-- .|| -.||+++ .
T Consensus 152 ~P~~a~FG~Kd~qql~~lr~mv~dl~------------------~--~V~iv~v--p~vRe-~dG-laiSSrN------~ 201 (301)
T 3cov_A 152 RPDRVFFGEKDYQQLVLIRQLVADFN------------------L--DVAVVGV--PTVRE-ADG-LAMSSRN------R 201 (301)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHHTT------------------C--CCEEEEE--CCCBC-TTS-CBCCTTG------G
T ss_pred CCCeEEECCCcccCHHHHHHHHHHcC------------------C--eEEEEee--CcEEe-CCC-CEEEecc------c
Confidence 68788888888999999999999876 2 2222100 01111 256 5999884 6
Q ss_pred ecCCCHHHHHHHhhhcc
Q 015067 290 NLLDPKDVIANKIKRCK 306 (413)
Q Consensus 290 ~L~D~pe~I~~KI~kA~ 306 (413)
||++...+..-.|-++.
T Consensus 202 yLs~~eR~~A~~l~~~L 218 (301)
T 3cov_A 202 YLDPAQRAAAVALSAAL 218 (301)
T ss_dssp GCCHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77766666655555554
No 90
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=35.72 E-value=7 Score=42.25 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.7
Q ss_pred ccCCccccCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhhc
Q 015067 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 305 (413)
Q Consensus 254 f~~P~~l~~~~~~~i~sL~dg~~KMSKS~p~~~s~I~L~D-----~pe~I~~KI~kA 305 (413)
++.|..++.. ..|.. +| +|||||. +|.|+..| .++.++=-+...
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4567655543 24432 56 7999997 68888654 566666665554
No 91
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=35.30 E-value=13 Score=41.51 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEE-Eecceee
Q 015067 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAI 122 (413)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~-IaDlhA~ 122 (413)
++.++.|. -|||.+|+||.+..+.+ +.+++.. ++|.+. --|-|.+
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 56777776 35799999998875422 4444443 565433 2344443
No 92
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=27.12 E-value=97 Score=29.12 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcc-cEEEEEecceeecC----CCCHHHHHHH--------HHHHHHHHH
Q 015067 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKA--------TRETAAIYL 143 (413)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~--------~~~~~a~~l 143 (413)
++..++.||-|=-.-|=+.++-.+..| .+..+ +|-|+++|.+.--+ ..++...++. .+.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~W--a~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQW--AGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHH--HHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999997778899999888889 46665 68999999954321 3344333222 234556677
Q ss_pred HcCCCCCC------cchhcchhHH
Q 015067 144 ACGIDNSK------SHVRAHVELM 161 (413)
Q Consensus 144 A~GiDp~k------S~i~~~~el~ 161 (413)
.+|.+.+. |++..+.+|.
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~~~~Y~ 129 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQETPEYR 129 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTTSHHHH
T ss_pred HhCCCccCceeeeHHHhhCCHHHH
Confidence 88888774 6666665543
No 93
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=26.56 E-value=22 Score=37.62 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.3
Q ss_pred ccceec--cccchHHHHHHHHHHHHHHh
Q 015067 210 QSDFVP--VGEDQKQHLELTRELAERVN 235 (413)
Q Consensus 210 ~adlVp--vG~DQ~~hleLaRdiA~r~n 235 (413)
+.|.+. +|.||..|+.-...+++.++
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 445555 99999999988888877654
Done!