RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015067
(413 letters)
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 724 bits (1871), Expect = 0.0
Identities = 287/393 (73%), Positives = 316/393 (80%), Gaps = 12/393 (3%)
Query: 27 SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
S G + PG + + A+ C C + + P + KKR+VSGVQ
Sbjct: 1 SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54
Query: 87 PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55 PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114
Query: 147 IDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 200
ID SK SHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174
Query: 201 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 260
LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234
Query: 261 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 320
IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS GLEFDN ER
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPER 294
Query: 321 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 380
PECNNLLSIYQL++GKTK EV EC +M WG FKPLLTDALIEHL PIQVRYEEIMSD +
Sbjct: 295 PECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPS 354
Query: 381 YLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
YLD VL +GA AA+IAD TL NVYQAMGF++R
Sbjct: 355 YLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 528 bits (1363), Expect = 0.0
Identities = 184/346 (53%), Positives = 233/346 (67%), Gaps = 23/346 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR++SG+QPTG +HLGNYLGAIKNW+ LQ+ YE F I DLHA+T+P D ++L + TRE
Sbjct: 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRE 60
Query: 138 TAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 191
AA YLACGID K SHV H EL W+L+ TP+G L +M QFK+KS K ENV
Sbjct: 61 LAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK-QKENV 119
Query: 192 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 251
L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG
Sbjct: 120 SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGE----------- 168
Query: 252 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS-- 309
+F VPEPLIP GARVM L KMSKS P+D + INLLD IA KIK+ TDS
Sbjct: 169 -VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227
Query: 310 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN--WGTFKPLLTDALIEHLHP 367
+ +D +PE +NLL+IY +SG++ E+ E + +G FK L +A++E L P
Sbjct: 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAP 287
Query: 368 IQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
I+ RYEE+++D AYLD++LA+GA KA +A TL V +AMG LR+
Sbjct: 288 IRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 383 bits (985), Expect = e-132
Identities = 157/327 (48%), Positives = 194/327 (59%), Gaps = 29/327 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPYDT--QQLSKA 134
K R++SG+QP+G +HLGNYLGAI+NW+ LQ Y E FFI DLHAIT+ D + L +A
Sbjct: 5 KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQA 64
Query: 135 TRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
TRE AA YLA G+D K S V H EL WLLS T G L +M QFK+KS K G
Sbjct: 65 TREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG- 123
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 248
E++ + LLTYPVL A+DILLYQ+ VPVGEDQ QHLELTR++A R N+LYG
Sbjct: 124 ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGE-------- 175
Query: 249 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
+F +PE LI AR+ L DG KMSKS P+ S I LLD I KIK+ TD
Sbjct: 176 ----VFPLPEALISKV-ARLPGL-DGPGKMSKSDPN--SAIFLLDDPKTIRKKIKKAATD 227
Query: 309 SSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHL 365
+E+ +PE NL IY + E+ E + + G K L +A+ E L
Sbjct: 228 GPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFL 287
Query: 366 HPIQVRYEEIMSDSAYLDKVLADGAAK 392
PIQ R EE+ D AYLD +L GA K
Sbjct: 288 KPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 337 bits (867), Expect = e-114
Identities = 149/347 (42%), Positives = 187/347 (53%), Gaps = 35/347 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATR 136
K R+++G+QP+G +HLG+YLGAI+ Q E I DLHAIT+ D L KA
Sbjct: 2 KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKARE 61
Query: 137 ETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 190
E AA YLA G+D K S H EL WLLS G L +M QFK+KS EN
Sbjct: 62 ELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---EN 118
Query: 191 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 250
V + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N +
Sbjct: 119 VPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF------------ 166
Query: 251 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 310
F PE LI R+M L+ KMSKS P+ S I L D I KI++ TD
Sbjct: 167 KNFFPKPESLISKFFPRLMGLSG--KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATDGG 222
Query: 311 AGLEFDNLERPECNNLLSIYQLISGKTK-----GEVAEECQN--MNWGTFKPLLTDALIE 363
F++ E+P NLL IYQ +S E+ E ++ + +G K L + L E
Sbjct: 223 RVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQE 282
Query: 364 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 410
L IQ R EI LDK+L GA KA + A+ TL +VY+AMG
Sbjct: 283 FLKEIQERRAEI--AEEILDKILEPGAKKARETANKTLADVYKAMGL 327
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 331 bits (851), Expect = e-113
Identities = 126/297 (42%), Positives = 164/297 (55%), Gaps = 29/297 (9%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRE 137
R++SG+QP+GS+HLG+YLGA + W+ LQ + YE FFI DLHA+T+ D ++L + TRE
Sbjct: 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRE 60
Query: 138 TAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 191
A YLACG+D K S V H EL WLLS G L +M FK+KS A GE+V
Sbjct: 61 NAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS--AQGESV 118
Query: 192 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 251
+ LLTYPVL A+DILLY++ VPVG DQ HLELTR++A R N LYG
Sbjct: 119 NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGE----------- 167
Query: 252 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 311
IF P L+ GA + L KMSKS P+ + I L D I KI + TD
Sbjct: 168 -IFPKPAALLSK-GAFLPGLQGPSKKMSKSDPN--NAIFLTDSPKEIKKKIMKAATDGGR 223
Query: 312 GLEFDNLERPECNNLLSIYQLISGKTKGEVAE--ECQ--NMNWGTFKPLLTDALIEH 364
+ P +NL+ IY E+ E E + + +G K LL +A+ E
Sbjct: 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 249 bits (639), Expect = 8e-81
Identities = 95/306 (31%), Positives = 133/306 (43%), Gaps = 42/306 (13%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD---TQQLSKAT 135
R+ +G PTG +HLG YL + + Q + +E F I DL AI ++L
Sbjct: 7 RVYTGFDPTGPLHLG-YLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERKLLSRE 65
Query: 136 RETAAI--YLACGIDNSKSHVR------AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 187
LACG+D KS + H+EL WLL LN+M+QFK+ +
Sbjct: 66 EVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLK 125
Query: 188 -GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 246
+ + TYP+L A+DILL ++D P G DQ H+EL R+LA R N
Sbjct: 126 QNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV-------- 177
Query: 247 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306
FK P L P +++ DG KMSKSA + S I L D K+ + KI++
Sbjct: 178 -------FKKPVGLTNP----LLTGLDGGKKMSKSAGN--SAIFLDDEKESVYKKIQKAY 224
Query: 307 TDSSAGLEFDNLERPECNN-LLSIYQLISGKTKGEVAEE----CQNMN--WGTFKPLLTD 359
TD + D E +N + I + GK AEE G K +
Sbjct: 225 TDPDREVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKAAAE 284
Query: 360 ALIEHL 365
A+ L
Sbjct: 285 AVNALL 290
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 249 bits (639), Expect = 3e-80
Identities = 114/345 (33%), Positives = 168/345 (48%), Gaps = 31/345 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR 136
K I++G +PTG +HLG+Y+G++KN +ALQN +E I D A+T + +++ +
Sbjct: 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNIL 61
Query: 137 ETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEK-SHKAGGE 189
E A YLA GID +K S + EL + + L + K + + K G
Sbjct: 62 EVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGR 121
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 249
++ LTYPV A+DI +++ VPVG+DQ +E TRE+ R N LY
Sbjct: 122 SIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLY----------- 170
Query: 250 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 309
G + PE L+P AG R+ L DG +KMSK S + I L D D I K+ TD
Sbjct: 171 GTDVLVEPEALLPEAG-RLPGL-DGKAKMSK---SLGNAIYLSDDADTIKKKVMSMYTD- 224
Query: 310 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG-----TFKPLLTDALIEH 364
+ ++ + E N + + K EVAE + G K L + L E
Sbjct: 225 PNHIRVEDPGKVEGNVVFTYLDAF-DPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQEL 283
Query: 365 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 409
L PI+ R E D Y+ ++L G+ KA ++A TL+ V AMG
Sbjct: 284 LAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMG 328
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 224 bits (574), Expect = 1e-69
Identities = 121/400 (30%), Positives = 198/400 (49%), Gaps = 76/400 (19%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRE 137
R++SG++PTG +HLG+Y G +KNW+ LQ+ YE FF+ D HA+T Y+T + + K +
Sbjct: 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWD 62
Query: 138 TAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 191
+LA G+D ++ S V H EL LLS TP+GWL ++ +K++ K +++
Sbjct: 63 MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDL 122
Query: 192 GV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------- 242
L YP+L ++DIL+Y++ VPVGEDQ H+E+TRE+A R N+LYG
Sbjct: 123 STYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEA 182
Query: 243 -WKKLGGRGGAIF---------------------------------------------KV 256
KKLG + ++ K+
Sbjct: 183 AIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242
Query: 257 ----PEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
P+ L+ A +++ L DG KMSKS + I L + + + KI+ TD +
Sbjct: 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARV 296
Query: 313 LEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQNMNWGTF--KPLLTDALIEHLHPIQ 369
D + PE + ++Q+ S + TK V + C++ G K + DA++ P++
Sbjct: 297 RRTDPGD-PEKCPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMR 355
Query: 370 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 409
R ++ D + + ++ADG KA +A T+ +V +AMG
Sbjct: 356 ERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMG 395
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 217 bits (555), Expect = 1e-67
Identities = 119/351 (33%), Positives = 186/351 (52%), Gaps = 40/351 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKAT 135
+K +++G++PTG HLGNY+GAIK + + +YE L+FI D HA+ +D +Q T
Sbjct: 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYT 62
Query: 136 RETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKA 186
RE AA +L+ G+D S V EL W+LS TP G +N+ +K +++ +A
Sbjct: 63 REVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEA 122
Query: 187 G-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 241
G G N+G L TYP+LMA+DILL+Q+ VPVG+DQ QH+E+ R++A N+ +
Sbjct: 123 GLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTF--- 177
Query: 242 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301
G F +PE +I ++ DG KMSKS + I L ++ +
Sbjct: 178 ---------GDTFTLPEYVI-QEEGAILPGLDG-RKMSKSY---GNVIPLFAEQEKLRKL 223
Query: 302 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEE--CQNMNWGTFKPLLTD 359
I + KTDSS E + PE + L +IY+ + + + + E + WG K L
Sbjct: 224 IFKIKTDSSLPNEPKD---PETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFR 280
Query: 360 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 410
+ L + +Y M++ + LD+ L GA +A +IA L + +A+GF
Sbjct: 281 VVDRELAGPREKYAMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGF 331
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 181 bits (462), Expect = 9e-53
Identities = 120/349 (34%), Positives = 181/349 (51%), Gaps = 36/349 (10%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIA--LQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
R+++G+ TG+ HLGNY GAI+ IA Q E+ +F+ D HA+ D ++ ++T E
Sbjct: 4 RVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLE 63
Query: 138 TAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKAGG 188
AA +LA G+D + S + EL WLL+ G LN+ +K +K+ AG
Sbjct: 64 IAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGE 123
Query: 189 E---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
+ V L YPVLMA+DIL++ + VPVG DQ QH+E+ R++A+R N+LY
Sbjct: 124 DPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLY------- 176
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
GG F +PE +I + A + L DG KMSKS + I L P++ + I
Sbjct: 177 ----GGEFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFSI 227
Query: 306 KTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQNMNWGTFKPLLTDALIE 363
TDS A E + E + L +YQ + +T + WG K L + +
Sbjct: 228 VTDSRAPGE---PKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDR 284
Query: 364 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 412
L P++ RYE +++ A ++ +L GAAKA IA L + +A+G LR
Sbjct: 285 ELAPMRERYEALIARPADIEDILLAGAAKARRIATPFLAELREAVG-LR 332
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 118 bits (296), Expect = 2e-30
Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 74/314 (23%)
Query: 81 IVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT----------LPYDT 128
+ G+ PT S+H+G+ +G + + Q++ + +F I I D
Sbjct: 2 LYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP 60
Query: 129 QQLSKATRETAAIYLACGIDNSKSHVR-----------AHVELMWLLSSATPIGWLNKMI 177
+++ + R AA YLA GI + AH++ + L + ++ +
Sbjct: 61 EEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKT 120
Query: 178 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLELTRELAER 233
F+ +S + + TYP L A+D LL + D P G DQ ++ L RELA R
Sbjct: 121 SFQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARR 176
Query: 234 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 293
N F + E L P V L K KS +
Sbjct: 177 FN-----------------GFTIAEGLTIP---LVTKLDG--PKFGKSESGPKWLDTEKT 214
Query: 294 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN---- 349
S ++++I + + +K E+ Q
Sbjct: 215 SPYEFYQFWI--NAVDS--------------DVINILKYFTFLSKEEIERLEQEQYEAPG 258
Query: 350 WGTFKPLLTDALIE 363
+ + L + + +
Sbjct: 259 YRVAQKTLAEEVTK 272
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 70.7 bits (174), Expect = 2e-13
Identities = 80/323 (24%), Positives = 127/323 (39%), Gaps = 63/323 (19%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHA-ITLPYDTQQLSKATRET 138
+ +G P+G +H+G+ + Q ++ I D A ++ + E
Sbjct: 69 VYTGFMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEY 127
Query: 139 AAIYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLT 197
+A G D K+ + E + + A + K + F E G + +
Sbjct: 128 ILDLIALGFDPDKTEIYFQSENIKVYDLAFELA---KKVNFSELKAIYGFTGETNIGHIF 184
Query: 198 YPVLMASDILLYQSDF------VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 251
YP A+DIL Q + VPVG DQ H+ LTR++AER++ YG
Sbjct: 185 YPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYG------------ 232
Query: 252 AIFKVPEPLIPPAG--ARVM-SLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
I P+ + M LT G KMS S P +S I L D + + KI + T
Sbjct: 233 --------FIKPSSTYHKFMPGLTGG--KMSSSKP--ESAIYLTDDPETVKKKIMKALTG 280
Query: 309 SSAGLEFDNLER-----PE-CNNLLSIYQLIS-------GKTKGEVAEECQN--MNWGTF 353
A LE +R P+ C +Y+L+ + K E+ EEC++ + G
Sbjct: 281 GRATLE---EQRKLGGEPDEC----VVYELLLYHLEEDDKELK-EIYEECRSGELLCGEC 332
Query: 354 KPLLTDALIEHLHPIQVRYEEIM 376
K + + E L Q + EE
Sbjct: 333 KKEAAEKIAEFLKEHQEKREEAR 355
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 52.1 bits (125), Expect = 3e-08
Identities = 39/204 (19%), Positives = 59/204 (28%), Gaps = 66/204 (32%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
SG+ P G +H+G+ + L +Y L + V
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDF-LAQAYRKLGYKV----------------------- 37
Query: 141 IYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 200
+A D + + A W+ ++ + Y
Sbjct: 38 RCIALIDDAGGLIGDPANK-KGENAKAFVERWIERIK----------------EDVEYMF 80
Query: 201 LMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP 257
L A+D LL + D G DQ H+EL EL ++ P
Sbjct: 81 LQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG-----------------GPARP 123
Query: 258 EPLIPPAGARVMSLTDGLSKMSKS 281
L RVM +KMSKS
Sbjct: 124 FGLTFG---RVMG--ADGTKMSKS 142
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 52.2 bits (126), Expect = 2e-07
Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 51/238 (21%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
G +P+G IHLG+ L K LQ + ++ + D HA + D +++ K +
Sbjct: 36 GFEPSGKIHLGHLLTMNK-LADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94
Query: 142 YLACGIDNSKSH-VRA--------HVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGGENV 191
+ A G+D K+ V + L+ L+ T L + + + E
Sbjct: 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTT---LARARRSMTIMGRRM--EEP 149
Query: 192 GVALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRG 250
V+ L YP++ +DI D G DQ K H+ L RE+ ++ Y
Sbjct: 150 DVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM-LAREVLPKLGY-------------- 194
Query: 251 GAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304
K P PL+ L G KMSKS P S I + D + I KIK+
Sbjct: 195 ----KKPVCIHTPLLT-------GLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 49.7 bits (119), Expect = 1e-06
Identities = 62/292 (21%), Positives = 101/292 (34%), Gaps = 43/292 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDTQQLSK-A 134
K ++ G PT S+HLG+ + +K Q +E + + D A I P + K
Sbjct: 30 KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLL 89
Query: 135 TRETAAIY-------LACGIDNSKSHVRAHVELMWLLS--------SATPIGWLNKMIQF 179
TRE +A +D K + WLL I +N+M++
Sbjct: 90 TREEVQENAENIKKQIARFLDFEK--AKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRR 147
Query: 180 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 239
S + + ++ YP+L A D + D G DQ ++ R+L R
Sbjct: 148 DAFSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLIRRNL---- 202
Query: 240 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 299
LG F + PL+ PA M ++G +S ++ D
Sbjct: 203 ----PSLG------FGLTVPLLTPADGEKMGKSEG-GAVSLDEGKYDFYQFWINTPDEDV 251
Query: 300 NKIKR--CKTDSSAGLEFDNLERP-----ECNNLLSIYQLISGKTKGEVAEE 344
KI + L+ P + N I + + G+ AEE
Sbjct: 252 KKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEE 303
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 41.8 bits (99), Expect = 3e-04
Identities = 56/245 (22%), Positives = 85/245 (34%), Gaps = 51/245 (20%)
Query: 84 GVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDT----QQLSKATRE 137
G PT S+HLG+ + +K Q +E + I D A I P + L
Sbjct: 6 GFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIR 65
Query: 138 TAAIYL-----ACGIDNSKSHVRAHVELMWLLSSATPIGWL-----------NKMIQFK- 180
A Y A + WLLS + L N+M++
Sbjct: 66 ENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLS----LYTLDFLRLGKHFTVNRMLRRDA 121
Query: 181 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 240
K E + + YP+L A D + D G DQ+ ++ L R+L ++ Y
Sbjct: 122 VKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLGY---- 177
Query: 241 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 300
KK + + PL+ DG KMSKS + +LD +
Sbjct: 178 ---KK-------VVGLTTPLLTGL--------DG-GKMSKSEG-NAIWDPVLDSPYDVYQ 217
Query: 301 KIKRC 305
KI+
Sbjct: 218 KIRNA 222
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 36.4 bits (85), Expect = 0.024
Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 42/246 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAI----TLPYDT-QQ 130
R+ G PT S+HLG+ + +K Q++ ++ + I D A+ + + +
Sbjct: 32 PLRVYIGFDPTAPSLHLGHLVPLMK-LRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKL 90
Query: 131 LSKATRE--TAAIYLACGIDNSKSHVRAHVELMWLLSS--------ATPIGWLNKMIQFK 180
L++ T I G + WL +N+M++
Sbjct: 91 LTRETVLENAETIKKQLGKF-LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRD 149
Query: 181 -EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV-GEDQKQHLELTRELAERVNYLY 238
K + + YP+L A D + Y + + + G DQ ++ R+L R+
Sbjct: 150 DVKKRLEREQGISFTEFNYPLLQAYDFV-YLNKDLQLGGSDQWGNILAGRDLIRRLGQ-- 206
Query: 239 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-----DQSRINLLD 293
KK+ G + PL+ + M ++G + S + Q +N+ D
Sbjct: 207 -----KKVVG-------LTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFYQYWMNIED 254
Query: 294 PKDVIA 299
DV
Sbjct: 255 -ADVKR 259
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.0 bits (83), Expect = 0.034
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 194 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 253
A + YP++ +DI ++D +G DQ++ L RE + + GRK K
Sbjct: 159 AQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLI-----GRKLK--------- 204
Query: 254 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303
P+I + + L G +KMSKS P S I + D ++ +A KI+
Sbjct: 205 -----PVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIR 246
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 34.2 bits (79), Expect = 0.091
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 218 EDQKQHLELTRELAERVNYLYGGRKWKKL--------GGRGGAIFKVPEPLIPPAGARVM 269
ED ++ LEL + ++ + + G+GGAI ++ E L P GARV+
Sbjct: 48 EDYEKELELLQIELVKLQRWVAETGQRVVIVFEGRDAAGKGGAIKRITEAL-NPRGARVV 106
Query: 270 SLTDGLSKMSKSAPSDQSR 288
+L AP+D+ R
Sbjct: 107 ALP---------APTDRER 116
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 30.6 bits (69), Expect = 0.41
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 206 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 265
+ D GED +Q+ EL R W K + PE + P
Sbjct: 52 KESIEEDISVCGEDFQQNRELYR--------------WVK---DNITLPVDPEQVELPRL 94
Query: 266 ARVMSLTDGLSKMSKS 281
+ MSK
Sbjct: 95 N------LETTVMSKR 104
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+P G +H+G+ I + + + I D + + D +L +
Sbjct: 2 ARFPGEP-GYLHIGHAKL-ICRAKGIA--DQCVVRIDDNPPVKVWQDPHELEERKESIEE 57
Query: 141 IYLACGID 148
CG D
Sbjct: 58 DISVCGED 65
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 30.0 bits (68), Expect = 1.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 23/81 (28%)
Query: 218 EDQKQHLELTRELAE----------RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGAR 267
E + + +L EL + ++ ++ GR G+GGAI +V E L P G R
Sbjct: 6 EYEAELAKLQIELVKLQEWVYAEGKKLVVIFEGRD---AAGKGGAIKRVTEAL-NPRGYR 61
Query: 268 VMSLTDGLSKMSKSAPSDQSR 288
+++L AP+++ R
Sbjct: 62 IVALP---------APTEEER 73
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 30.4 bits (68), Expect = 2.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 357 LTDALIEHLHPIQVRYEEIMSDSAYLDKV----LADGAAKAADIADATLNNVYQAM 408
L D+ +++LH + +M+D+ ++ V + G+ KA DI DA L +Y +
Sbjct: 167 LIDSFMKNLHNVT---GVLMTDTDFVSAVKRNLFSHGSQKATDIMDAMLKKLYSVL 219
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 29.5 bits (66), Expect = 3.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 78 KKRIVSGVQPTGSIHLGNY 96
+ SG+ P+G IH+GN+
Sbjct: 19 LYTVASGITPSGHIHIGNF 37
>gnl|CDD|237206 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF;
Reviewed.
Length = 115
Score = 28.0 bits (63), Expect = 3.6
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 369 QVRYEEIMSDSAYLDK------------VLADGAAKAADIADATLNNVYQAMGFLRR 413
Q Y E+M DS + +L AK A +A +A+ F RR
Sbjct: 3 QFSYAEVMEDSVASARERERQAFDRSIDLLEAARAKGAYSREAI-----EALYFTRR 54
>gnl|CDD|213852 TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family.
Members of this protein family are designated
polyphosphate kinase 2 (PPK2) after the characterized
protein in Pseudomonas aeruginosa. This family comprises
one of three well-separated clades in the larger family
described by pfam03976. PA0141 from this family has been
shown capable of operating in reverse, with GDP
preferred (over ADP) as a substrate, producing GTP (or
ATP) by transfer of a phosphate residue from
polyphosphate. Most species with a member of this family
also encode a polyphosphate kinase 1 (PPK1) [Central
intermediary metabolism, Phosphorus compounds].
Length = 230
Score = 28.4 bits (64), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 248 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 288
G+GG I ++ E L P GARV++L P+D+ R
Sbjct: 43 GKGGTIKRITEHL-NPRGARVVAL---------PKPTDRER 73
>gnl|CDD|225566 COG3022, COG3022, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 253
Score = 28.4 bits (64), Expect = 5.9
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 252 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK-IKRCKTDSS 310
+ K+ L P + +M ++D K A + R + + A + I D
Sbjct: 33 ELLKILRKLSPNQISSLMKISD------KLAGLNAQRFQDWETQFTPARQAILAFNGDVY 86
Query: 311 AGLEFDNLERPECNNLLSIYQLISG 335
GL+ + L + L +++SG
Sbjct: 87 TGLDAETLSEKDQAYLQQHLRILSG 111
>gnl|CDD|153380 cd07368, PhnC_Bs_like, PhnC is a Class III Extradiol ring-cleavage
dioxygenase involved in the polycyclic aromatic
hydrocarbon (PAH) catabolic pathway. This subfamily is
composed of Burkholderia sp. PhnC and similar poteins.
PhnC is one of nine protein products encoded by the phn
locus. These proteins are involved in the polycyclic
aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a
member of the class III extradiol dioxygenase family, a
group os enzymes which use a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. LigAB-like enzymes are
usually composed of two subunits, designated A and B,
which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
Length = 277
Score = 27.9 bits (62), Expect = 8.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 115 FIVDLHAITLPYD-----TQQLSKATRETAAIYLACGIDNSKSHVRAH 157
F VD HA T+P + K R +YLA G+D + RAH
Sbjct: 118 FTVD-HAATIPIHLAVRPVRAKGKGMR-AIPVYLATGVDPFITSWRAH 163
>gnl|CDD|236365 PRK09041, motB, flagellar motor protein MotB; Validated.
Length = 317
Score = 28.0 bits (63), Expect = 9.8
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 160 LMWLLSSATP 169
+MWLLSS+TP
Sbjct: 43 VMWLLSSSTP 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,674,222
Number of extensions: 1962028
Number of successful extensions: 1567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1505
Number of HSP's successfully gapped: 39
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)