RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015067
(413 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 556 bits (1434), Expect = 0.0
Identities = 155/358 (43%), Positives = 211/358 (58%), Gaps = 21/358 (5%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMI 177
D L K T +T A+YLACGID K SHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 178 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 237
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 238 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 297
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 298 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKP 355
+ KIKR TDS + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287
Query: 356 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
+ DA+ L +Q RY D A L V+ +GAAKA A TL VY+A+GF+ +
Sbjct: 288 AVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 551 bits (1423), Expect = 0.0
Identities = 144/350 (41%), Positives = 206/350 (58%), Gaps = 19/350 (5%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 186
+AT + AI LA G+D K SHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 187 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 246
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 247 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 306
IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I KI + +
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQ 230
Query: 307 TDSSAGLE--FDNLERPECNNLLSIYQLISGKTKGEVAEECQNM-NWGTFKPLLTDALIE 363
TD+ +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 231 TDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVA 290
Query: 364 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
L P+Q Y+ I +D YL+ V+ DGA KA+ A TL VY A+GF+ R
Sbjct: 291 MLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 547 bits (1412), Expect = 0.0
Identities = 158/341 (46%), Positives = 205/341 (60%), Gaps = 21/341 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N YG
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG------------E 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 549 bits (1416), Expect = 0.0
Identities = 154/348 (44%), Positives = 207/348 (59%), Gaps = 21/348 (6%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 132 SKATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 185
K R AA+YLA G+D K S V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
Query: 306 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 365
TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L
Sbjct: 255 VTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNAL 314
Query: 366 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
PIQ RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 315 KPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 537 bits (1385), Expect = 0.0
Identities = 115/357 (32%), Positives = 175/357 (49%), Gaps = 34/357 (9%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 137 ETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 185
+ LA G+D K S + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
Query: 306 KTDSSAGLEFDNLERPECNNLLSIYQLISGKT---------KGEVAEECQNMNWGTFKPL 356
TDS + F + +P N+L+I + + + ++ ++ K
Sbjct: 231 TTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNA 290
Query: 357 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
LT+A + L IQ + E+I + + L G +A A TL Y G +
Sbjct: 291 LTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGSQ 345
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 499 bits (1287), Expect = e-178
Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 25/341 (7%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 136 RETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 189
+ AA +L+ GID K S V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 249
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +G
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWG---------- 168
Query: 250 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 309
IF +PE + A V+ DG +KMSKS Q+ I++ + + +I TDS
Sbjct: 169 --EIFTLPEARVNEEVAVVVGT-DG-AKMSKS---YQNTIDIFSSEKTLKKQISSIVTDS 221
Query: 310 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 369
+A + + E + ++ SG+ + ++ E +G FK L + + + +
Sbjct: 222 TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAR 281
Query: 370 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 410
+Y E++ ++L ++L GA KA IA + +Y+ +G
Sbjct: 282 EKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 493 bits (1272), Expect = e-176
Identities = 138/348 (39%), Positives = 193/348 (55%), Gaps = 32/348 (9%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
T E A + +A G+D K SHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 248
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 249 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223
Query: 309 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGT--FKPLLTDALIEHL 365
+ + PE L + + K E + EE + GT K +L D L+E L
Sbjct: 224 -PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 366 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 413
PI+ R E + D Y+ L +GA +A +A AT+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 450 bits (1159), Expect = e-158
Identities = 98/365 (26%), Positives = 161/365 (44%), Gaps = 30/365 (8%)
Query: 59 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ+ E + D
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIG 171
+ A+T +D +Q+ + A YLA G+D K S V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 172 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 230
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 231 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 290
R N LY + P+ + R+ L DG +KMSKS + I
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIA 225
Query: 291 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG--EVAEECQN- 347
L D D +A K+ TD L + R E N + + + ++ +
Sbjct: 226 LGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAG 284
Query: 348 -MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 406
+ K L D L L PI+ R E D + + + +G A+ ++A TL V +
Sbjct: 285 GLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRR 344
Query: 407 AMGFL 411
AM
Sbjct: 345 AMRLF 349
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 431 bits (1110), Expect = e-151
Identities = 115/347 (33%), Positives = 171/347 (49%), Gaps = 32/347 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 136 RETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 188
R+ +LACGID K S V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 248
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 249 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 308
+F PE ++ ++ DG KMSK S + INL + + I R TD
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQTILRMMTD 233
Query: 309 SSAGLEFDNLERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEH 364
A + + PE + +Q + V E C + K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 365 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 411
L PI + +I D Y+D V+ +G KA ++A T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 288 bits (738), Expect = 1e-94
Identities = 57/341 (16%), Positives = 110/341 (32%), Gaps = 35/341 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATR 136
+ G + +G IHLG L A Q + +T F+ D H+ L
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 137 ET--------AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEK 182
G D K S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 183 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 242
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 243 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298
+KL + P P KMSKS P S + + D + I
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFIHDSPEEI 270
Query: 299 ANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 346
K+++ + + + + ++ T E+ +
Sbjct: 271 RQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFA 330
Query: 347 N--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 385
++ K + + LI L PI+ +E+ + V
Sbjct: 331 EGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 290 bits (743), Expect = 7e-92
Identities = 63/369 (17%), Positives = 121/369 (32%), Gaps = 57/369 (15%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
R G +P+G +H+ + N + E +F++ D A+ + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 134 ATRETAAIYLACGIDNSK-------SHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 185
R ++ A G+D K + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
P L + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 306 KTD-----SSAGLEFDNLERPECNNLLSIY------------QLISGKTKGEVAE----- 343
+SA + + N + Y I G T +
Sbjct: 257 YCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAF 316
Query: 344 ECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 403
++ K L D + L P++ + L+ V + A T
Sbjct: 317 VSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETALP 376
Query: 404 VYQAMGFLR 412
A
Sbjct: 377 AAPAKPHAC 385
Score = 208 bits (531), Expect = 5e-61
Identities = 43/370 (11%), Positives = 100/370 (27%), Gaps = 63/370 (17%)
Query: 51 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSK------SHVRAHVEL 160
+ D A+ + + +S A + A+ A G+ +S + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 161 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 219
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 220 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 279
RE + + R+ +L + +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAAPA 566
Query: 280 KSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------NLERPECNN 325
+ L D I KIK+ +++ + ++ER E N
Sbjct: 567 VLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624
Query: 326 LLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 383
Y T + +C + ++ K + L++ + + + +
Sbjct: 625 GNVSY-----NTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTVL 679
Query: 384 KVLADGAAKA 393
+ AK
Sbjct: 680 RNAEKKMAKK 689
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 274 bits (702), Expect = 2e-89
Identities = 55/341 (16%), Positives = 119/341 (34%), Gaps = 49/341 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
K G +P+G +H+ L L ++ +F+I D A + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 134 ATRETAAIYLACGIDNSKS-------HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 185
++ +CG++ + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
+ + + + L +G KMSKS + S I + D + + KIK+
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRKIKKA 273
Query: 306 KTDSSAGLEFDNLERPECNNLLSIYQLIS------------GKTKGEVAEECQN--MNWG 351
+E + + + + Y + T E+ + N ++
Sbjct: 274 YCP-PNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPL 332
Query: 352 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 392
K + + + L P++ ++ + L+++ K
Sbjct: 333 DLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVTK 373
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 265 bits (680), Expect = 2e-86
Identities = 56/334 (16%), Positives = 117/334 (35%), Gaps = 55/334 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
+G +P+G IH+ L + N + + + +I D A + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 134 ATRETAAIYLACGIDNSK------SHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 183
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 184 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 240
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 241 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 300
+ I + +MSL+ KMSKS P I + D + ++
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEVSE 253
Query: 301 KIKRCKTDSS-------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF 353
KI R +++ L NL + E+ +MN
Sbjct: 254 KISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCG----KIYTDIESIQEDFSSMNKREL 309
Query: 354 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 387
K + + + + ++ +++ L V +
Sbjct: 310 KTDVANYINTIIDLVREHFKKPELSE-LLSNVKS 342
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 241 bits (617), Expect = 2e-76
Identities = 52/351 (14%), Positives = 103/351 (29%), Gaps = 49/351 (13%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
+ +G P+G +H+G+ + W+ + I D + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 135 TRETAAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
+ +A G D K S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 189 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 247
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT-------- 236
Query: 248 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 307
+ +P SLT KMS S ++ I L D + + K+ +
Sbjct: 237 ------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTL 281
Query: 308 DSSAGLEFDNLE---RPECNNLLSIYQLISGKTKGEVAE---ECQN--MNWGTFKPLLTD 359
+ E PE + ++ + ++ E C+N + G K L
Sbjct: 282 TGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLIS 341
Query: 360 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 410
+ E L Q R ++ + L +
Sbjct: 342 KIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRSHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 188 bits (478), Expect = 2e-55
Identities = 56/355 (15%), Positives = 114/355 (32%), Gaps = 52/355 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 135 TRETAAIYLACGIDNSK----SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 190
E A +ACG D +K S + + I Q K ++
Sbjct: 168 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFTDS 225
Query: 191 VGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYLYG 239
+ +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 226 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY--- 282
Query: 240 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 299
P+P + + +L +KMS S P+ S I L D I
Sbjct: 283 -----------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQIK 322
Query: 300 NKIKRCKTDSSAGLEFD------NLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWG 351
K+ + + N + L+ + L ++ ++ + M G
Sbjct: 323 TKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAMLTG 381
Query: 352 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 406
K L + L + Q R +E+ + + +A A ++ +
Sbjct: 382 ELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHHH 436
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 178 bits (453), Expect = 3e-52
Identities = 46/343 (13%), Positives = 98/343 (28%), Gaps = 49/343 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
+ +G P+ S+H+G+ + + W+ + + D +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 135 TRETAAIYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGV 193
T E +A G D + + + M + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFDYM--GCMYRTVAKIERAFTASQVRGCFGFAMEDNC 195
Query: 194 ALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVNYLYGGR 241
+P + A+ +P DQ + LTR++A R+ YL
Sbjct: 196 GRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLK--- 252
Query: 242 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301
P + L+ KMS S + + L D + ++ +K
Sbjct: 253 ---------------PAVIHSK---FFPGLSGPKGKMSSS---SGTAVLLTDTEKMVKDK 291
Query: 302 IKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLI--SGKTKGEVAEECQN--MNWGTFK 354
I + + ++ E + + + V +E + G K
Sbjct: 292 INKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVK 351
Query: 355 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIA 397
LL + + Q + + + + L
Sbjct: 352 KLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 170 bits (431), Expect = 5e-49
Identities = 57/351 (16%), Positives = 115/351 (32%), Gaps = 56/351 (15%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
+ +G P+ S+H+G+ + + LQ++ + + D + ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 133 KATRETAAIYLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENV 191
E +ACG D + + ++E + I + K I + G ++
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYI--AELYPDILRIEKKISCSQIKSIFGFKDSC 190
Query: 192 GVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYLYGG 240
V +P + A+ VP DQ + + R++A R+ YL
Sbjct: 191 NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLK-- 248
Query: 241 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 300
P + + SL +KMS S + S I + D ++ I N
Sbjct: 249 ----------------PSSIHSI---FLPSLQGSQTKMSASVQN--SSIFVNDNEESIRN 287
Query: 301 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAEECQNMNWGT--F 353
KI + E + ++ +Q + + E+ ++ + +
Sbjct: 288 KIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEI 347
Query: 354 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNV 404
K +L L++ Q E D V+A K+ + N
Sbjct: 348 KSILVQELVKLTKNHQKNREA------INDDVIAKFTNKSREQLLKLFINK 392
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 163 bits (413), Expect = 5e-46
Identities = 47/358 (13%), Positives = 103/358 (28%), Gaps = 65/358 (18%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
+ +G P+ S+HLG+ + + W+ + + D + +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 134 ATRETAAIYLACGID--------NSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 185
RE A +A G D + + A E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 234
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 235 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 294
Y +P + +L +KMS S + + I + D
Sbjct: 274 KY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--TAIFMTDT 310
Query: 295 KDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN-- 347
I KI + + E P+ + E ++ ++
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370
Query: 348 MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA----YLDKVLADGAAKAADIADATL 401
+ G K L + L E + Q R ++ ++ K++ + T
Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTK 428
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 163 bits (413), Expect = 1e-45
Identities = 53/325 (16%), Positives = 112/325 (34%), Gaps = 48/325 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 135 TRETAAIYLACGIDNSKSHVRAHV-ELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVG 192
E A +ACG D +K+ + + + + + + K + F + G ++
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDC 274
Query: 193 VALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYLYGGR 241
+ +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 275 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY----- 329
Query: 242 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 301
P+P + + +L +KMS S P+ S I L D I K
Sbjct: 330 ---------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQIKTK 371
Query: 302 IKRCKTDSSA------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTF 353
+ + N + L+ + L ++ ++ + M G
Sbjct: 372 VNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 354 KPLLTDALIEHLHPIQVRYEEIMSD 378
K L + L + Q R +E+ +
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDE 455
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 149 bits (378), Expect = 2e-41
Identities = 41/327 (12%), Positives = 99/327 (30%), Gaps = 59/327 (18%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
I P + L Y+ LQ+++ I L I + + SK
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140
Query: 135 TRETAAIYLACGIDNSKS-------HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 187
+ + LA G + K+ + + L+ AT + F+ +
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197
Query: 188 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 238
+ L P +M + + V Q + ++A +N+
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF-- 250
Query: 239 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 298
+P + +++ L G++K + + I L D +
Sbjct: 251 ------------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLSDNAKQV 288
Query: 299 ANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN--MNWG 351
KI + ++ + + + + + + S +V E+ + G
Sbjct: 289 ERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSG 348
Query: 352 TFKPLLTDALIEHLHPIQVRYEEIMSD 378
K +++ ++ + + + + I +
Sbjct: 349 ELKKIVSASMKDFIVAYDAKKKPITTA 375
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 137 bits (346), Expect = 1e-36
Identities = 44/323 (13%), Positives = 88/323 (27%), Gaps = 50/323 (15%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + + ++ + I D + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 135 TRETAAIYLACGIDNSKSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GEN 190
RE + G D +++ I ++K I E G +
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEEN-----ILKISKTINLNEAIKVFGFDMS 215
Query: 191 VGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLYGGRK 242
+ + +P + F VP DQ L R+ A+ +
Sbjct: 216 SNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK---- 271
Query: 243 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 302
P + + L KMS S P+ S I L D +D I KI
Sbjct: 272 --------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLDDAQDTIRKKI 312
Query: 303 KRCKTDSSAGLEFDNLE---RPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKP 355
++ E + + + + + + K
Sbjct: 313 IAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKE 372
Query: 356 LLTDALIEHLHPIQVRYEEIMSD 378
+ E + Q + + D
Sbjct: 373 KCVVVIQEFVSRYQESRKRVTDD 395
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 96.8 bits (240), Expect = 5e-22
Identities = 61/361 (16%), Positives = 106/361 (29%), Gaps = 72/361 (19%)
Query: 78 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
I +G P+ G++HLG+ L I Y + D + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 134 ATRETAAIYLACGIDNSKSH---------VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 184
TRE +ACG D K+ ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 185 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 244
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 245 KLGGRGGAIFKVPEPL-----------IPPAGA--------------------------- 266
K + V E + +G
Sbjct: 263 KKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGK 322
Query: 267 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNL 326
+ L +KMS S P+ S I L D I NKI + S G + + R +L
Sbjct: 323 FLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKIN--RYAFSGGRDTEEEHRAFGADL 378
Query: 327 LSI----YQLISGKTKGEVAE---ECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMS 377
Y + K E+ + + + + G K L L + R +++ +
Sbjct: 379 SVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT 438
Query: 378 D 378
Sbjct: 439 T 439
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 85.2 bits (211), Expect = 3e-18
Identities = 62/345 (17%), Positives = 98/345 (28%), Gaps = 92/345 (26%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 134
++ G PTG H G ++ K + E + DLHA + P +
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99
Query: 135 TRETAAIYL--ACGIDNSKSHVR---------AHVELMWLLSSATPIGWLNKMIQFKEKS 183
E + + + K + ++ LS+ + K
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159
Query: 184 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 243
N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY------- 208
Query: 244 KKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 299
K P++P KMS S P S+I+LL+ +
Sbjct: 209 -----------KKRAHLMNPMVPG--------LAQGGKMSASDP--NSKIDLLEEPKQVK 247
Query: 300 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------SGKTKGEVAEECQNMNWG 351
KI F + E N LLS Q + G E + G
Sbjct: 248 KKINSA---------FCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGG 298
Query: 352 TF----------------------KPLLTDALIEHLHPIQVRYEE 374
K + DA+ E L PI+ +
Sbjct: 299 PITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 77.3 bits (191), Expect = 6e-16
Identities = 64/328 (19%), Positives = 112/328 (34%), Gaps = 78/328 (23%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K G +P+G IHLG+YL K I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGID------NSKSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 189
++ A G+ + + + ++ L+ T + + ++ + E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DE 142
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 249
N VA + YP++ + D G +Q++ L REL
Sbjct: 143 NPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP----------------- 185
Query: 250 GGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
K P++ G DG KMS S + I + D + I KIK+
Sbjct: 186 -----KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDSPEEIRAKIKKA 229
Query: 306 KTDSSAGLEFDNLERPECNNLLSIYQLI--------------SGKTKGEVAEECQNMNWG 351
+ E N ++ I + T E
Sbjct: 230 ---------YCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 352 TF-----KPLLTDALIEHLHPIQVRYEE 374
K + + LI+ L PI+ R E
Sbjct: 281 ELHPMYLKNAVAEELIKILEPIRKRLLE 308
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 72.9 bits (179), Expect = 3e-14
Identities = 58/341 (17%), Positives = 112/341 (32%), Gaps = 84/341 (24%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
G +P+G H+G + K + L + + HA I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98
Query: 139 AAIYLACGIDNSK------SHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 189
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 99 RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156
Query: 190 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY------------- 236
V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISS 216
Query: 237 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 296
L G + + G + KMSKS P ++ + ++D D
Sbjct: 217 LQGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVFVVDSDD 255
Query: 297 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF--- 353
I KI++ + ++ + N +L I + I G + +G
Sbjct: 256 DIRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEY 306
Query: 354 --------------------KPLLTDALIEHLHPIQVRYEE 374
K + ++LIE + PI+
Sbjct: 307 TSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 70.4 bits (173), Expect = 1e-13
Identities = 61/331 (18%), Positives = 115/331 (34%), Gaps = 81/331 (24%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
R G +P+G IHLG+ + K + LQ + +E + + D+HA + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 138 TAAIYLACGIDNSKSHVR---------AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 188
+++A G+D S++ +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 189 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 248
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------------ 196
Query: 249 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 304
P P++ DG KMS S + I++ DP + + KI++
Sbjct: 197 ------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEEVERKIRK 238
Query: 305 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF----------- 353
+ E N +L I + G++ E G
Sbjct: 239 A---------YCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAED 289
Query: 354 -----------KPLLTDALIEHLHPIQVRYE 373
K + L L + R
Sbjct: 290 FKSGQLHPLDLKIAVAKYLNMLLEDARKRLG 320
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 70.2 bits (172), Expect = 2e-13
Identities = 64/332 (19%), Positives = 104/332 (31%), Gaps = 77/332 (23%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAI----TLPYDTQQLSKA 134
+I G TG H+ ++ K + E DLHA P++ +L +
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK-IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVS 95
Query: 135 TRETA--AIYLACGIDNSKSHVR---------AHVELMWLLSSATPIGWLNKMIQFKEKS 183
E A+ + G+ K + ++ LSS K K
Sbjct: 96 YYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQ 155
Query: 184 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 243
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 156 ----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------- 204
Query: 244 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 303
L+ P ++ G SKMS S S+I+LLD K+ + K+K
Sbjct: 205 -----------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKEDVKKKLK 246
Query: 304 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF---------- 353
+ F E N +LS + + K E G
Sbjct: 247 KA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEK 297
Query: 354 ------------KPLLTDALIEHLHPIQVRYE 373
K + AL + L PI+ ++
Sbjct: 298 DFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 8e-07
Identities = 75/532 (14%), Positives = 138/532 (25%), Gaps = 217/532 (40%)
Query: 3 RALLSHF---LIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
L+ F + N L + L + L LI+ Y
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK----ELIK--------------NY 126
Query: 60 --CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYL-----GAIKNWIA-LQNSYE 111
+ P ++S+ + V G+ L G ++ L++ Y+
Sbjct: 127 ITARIMAKRPFDKKSNSA-----LFRAVG-EGNAQL--VAIFGGQGNTDDYFEELRDLYQ 178
Query: 112 T----LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKSHVRAHVELMWL---- 163
T + ++ A TL +L + T + ++ G++ + WL
Sbjct: 179 TYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQ-GLN-----ILE-----WLENPS 223
Query: 164 -------LSSAT---P-IGWLNKMIQFKEKSHKAG----------------GENVGVALL 196
L S P IG + ++ + + G + + A+
Sbjct: 224 NTPDKDYLLSIPISCPLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 197 ------------------------------TYPVLMASDILLYQSDFVPVGEDQ------ 220
YP +L D + E
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLS 340
Query: 221 -----KQHLELTRELAERVN-----------YLYGGRKWKKLGGRGGAIFKVPEPLIPPA 264
++ ++ + + N L G K + G PP
Sbjct: 341 ISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-------------PPQ 384
Query: 265 GARVMSLTDGLS----KMSKSAPSDQSRINLLDPKDVIANK----------------IKR 304
SL GL+ K + DQSRI + K +N+
Sbjct: 385 -----SLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 305 CKTD-SSAGLEFDN--LERPECNNLLSIYQLISGK----TKGEVAEECQNMNWGTFKPLL 357
D + F+ ++ P +Y G G ++E +
Sbjct: 439 INKDLVKNNVSFNAKDIQIP-------VYDTFDGSDLRVLSGSISER------------I 479
Query: 358 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 409
D +I V++E A +L G A+ + T N G
Sbjct: 480 VDCIIRL----PVKWETTTQFKA--THILDFGPGGASGLGVLTHRNK-DGTG 524
Score = 37.3 bits (86), Expect = 0.010
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 68/176 (38%)
Query: 252 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 286
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 287 S-----RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG-- 339
+ ++P V +A + L+ + + + +T
Sbjct: 1802 LGRSNYGMIAINPGRV------------AASFSQEALQY--------VVERVGKRTGWLV 1841
Query: 340 EVAEECQNMNW--------GTFKPLLTDALIEHLHPIQVRYEEI--MSDSAYLDKV 385
E+ N N G + L D + L+ I+++ +I + S L++V
Sbjct: 1842 EIV----NYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.5 bits (63), Expect = 5.5
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 339 GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY---EEIMSDSAYLDKVLADGAAKAAD 395
G V+ + G F +L L E + Y +I + +A L + K +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 396 IADATLNNVYQAMGFLRR 413
+ + N A +R
Sbjct: 122 L----IKNYITARIMAKR 135
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 29.3 bits (66), Expect = 2.4
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 366 HPIQVRYEEIMSDSAYLDKVLADGAA-KAADIADATLNNV--YQAMGFL 411
+ ++V + + K L + ADI + V G +
Sbjct: 28 YGVEVEVQYVNFQD-IKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLI 75
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.1 bits (63), Expect = 5.3
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 196 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 255
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 256 VPEPLIPPAGARVMSLTDGLSKMSKSA 282
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 27.1 bits (61), Expect = 6.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 362 IEHLHPIQVRYEE 374
+E + I+VRY E
Sbjct: 1 MESVTRIKVRYAE 13
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 6.6
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 385 VLADGAAKA--ADIADATLNNVYQAMGFLRR 413
++A G KA + L N+ A+ +L
Sbjct: 212 LVATGVYKARDIKAPGSGLGNIVAALDYLTT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,154,704
Number of extensions: 363387
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 37
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)