RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015067
(413 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 293 bits (750), Expect = 1e-97
Identities = 153/340 (45%), Positives = 200/340 (58%), Gaps = 21/340 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
AA+YLA GID ++ S V AH + W+L IG L +M QFKEKS + G
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 252
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N R G
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 312
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 313 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 372
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 373 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 412
M LD+VL +GA KA +A + + QAMG R
Sbjct: 288 HHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 181 bits (460), Expect = 9e-54
Identities = 52/335 (15%), Positives = 104/335 (31%), Gaps = 52/335 (15%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D Q
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 135 TRETAAIYLACGIDNSK----SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 190
E A +ACG D +K S + + I Q K ++
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGF--TDS 191
Query: 191 VGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYLYG 239
+ +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 192 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPK- 250
Query: 240 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 299
P L +L +KMS S P S I L D I
Sbjct: 251 -----------------PALLHST---FFPALQGAQTKMSASDP--NSSIFLTDTAKQIK 288
Query: 300 NKIKRCKTDSSAGLEFDNLERPECN-----NLLSIYQLISGKTKGEVAEECQN--MNWGT 352
K+ + ++ + + + L ++ ++ + M G
Sbjct: 289 TKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGE 348
Query: 353 FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 387
K L + L + Q R +E+ + + + +
Sbjct: 349 LKKALIEVLQPLIAEHQARRKEVTDE--IVKEFMT 381
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 163 bits (412), Expect = 2e-47
Identities = 50/337 (14%), Positives = 105/337 (31%), Gaps = 56/337 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ +I G TG H+ ++ K L+ E DLHA R
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91
Query: 138 TAAI------YLACGIDNSK------SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 185
+ + G+ K + + E + + + + + + K
Sbjct: 92 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151
Query: 186 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 245
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR------ 204
Query: 246 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 305
+ + GL+ S+ ++S+I+LLD K+ + K+K+
Sbjct: 205 -------------------VHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKA 245
Query: 306 KTDS-----------SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGT 352
+ + F + ++ ++ ++ G
Sbjct: 246 FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 305
Query: 353 FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 389
K + AL + L PI+ ++ ++ L K+ +
Sbjct: 306 LKNSVEVALNKLLDPIREKF-----NTPALKKLASAA 337
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 115 bits (287), Expect = 8e-30
Identities = 60/309 (19%), Positives = 107/309 (34%), Gaps = 46/309 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 135
+K G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSK---SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 192
++ A G+ S + + + L + + E EN
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL-IAREDENPK 145
Query: 193 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 252
VA + YP++ +DI D G +Q++ L REL +
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL--------- 196
Query: 253 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA- 311
GL K + S + I + D + I KIK+ +
Sbjct: 197 --------------------TGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVV 236
Query: 312 -------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTDALI 362
++ ++ + E+ +N ++ K + + LI
Sbjct: 237 EGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELI 296
Query: 363 EHLHPIQVR 371
+ L PI+ R
Sbjct: 297 KILEPIRKR 305
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 79.7 bits (195), Expect = 5e-17
Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 18/177 (10%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ G PT +HLG+ + K + ++ + I D + + ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 137 ETAAI-----------------YLACGIDNSKSHVRAHVELMWLLSSATPIGWLNKMIQF 179
S + ++ + + + +
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152
Query: 180 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 236
K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 333 ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 367
+ + + + +NM W L ++ L
Sbjct: 189 VVAPSGDNITHKSENMKWYNGPTLE--EYLDQLEL 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 2.1
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 78 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 104
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.1 bits (58), Expect = 3.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 329 IYQLISG----KTKGEVAEECQNMNWGTFKPL--LTDALIEHLHPIQVRYEEIM 376
+Y I G ++ EV + M +PL L+ + HLH I+ EE M
Sbjct: 40 VYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGV--HLHTIEAPDEETM 91
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.7 bits (58), Expect = 4.8
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 25.9 bits (57), Expect = 9.2
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRE-----TAAIYL 143
L N W+ ++ + + + I PY ++++ + T ++L
Sbjct: 13 GARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHL 72
Query: 144 AC 145
Sbjct: 73 MY 74
>d2o9xa1 a.184.1.1 (A:1-153) Reductase assembly protein AF0173
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 153
Score = 25.3 bits (55), Expect = 9.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 105 ALQNSYETLFFIVDLHAITLPY-----DTQQLSKATRETAAIYLACGID 148
ALQ Y +LF PY + KA+ A +Y G++
Sbjct: 46 ALQVEYTSLFISSHPSVPCPPYQSYFEEGSVYGKASLRAAELYSKYGLN 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,472,145
Number of extensions: 66598
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 12
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)