Query 015068
Match_columns 413
No_of_seqs 383 out of 1815
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 06:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1E-38 3.5E-43 302.9 33.6 352 45-413 7-398 (491)
2 3o7q_A L-fucose-proton symport 100.0 3.3E-31 1.1E-35 247.5 27.5 278 51-364 27-343 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6.8E-31 2.3E-35 246.3 19.4 297 47-362 25-337 (451)
4 2gfp_A EMRD, multidrug resista 100.0 1.5E-28 5.1E-33 224.8 13.1 253 54-345 4-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 6E-25 2E-29 208.2 27.1 138 80-217 49-193 (491)
6 2cfq_A Lactose permease; trans 99.9 1.2E-22 4.2E-27 188.0 5.1 267 67-363 24-306 (417)
7 2xut_A Proton/peptide symporte 99.8 3.8E-20 1.3E-24 176.6 19.0 144 74-217 37-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 6.7E-14 2.3E-18 130.6 17.1 153 68-220 270-433 (451)
9 2cfq_A Lactose permease; trans 99.5 4.2E-13 1.4E-17 123.9 13.6 142 83-224 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 2.9E-12 9.8E-17 119.1 16.6 146 71-219 279-431 (438)
11 4gc0_A D-xylose-proton symport 99.4 1E-12 3.5E-17 124.0 10.7 157 68-224 295-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2.9E-12 9.8E-17 121.0 12.4 147 71-217 304-468 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.1E-10 3.6E-15 106.1 3.3 133 71-206 220-362 (375)
14 2xut_A Proton/peptide symporte 98.9 5.9E-09 2E-13 99.1 9.3 134 86-219 336-501 (524)
15 2g9p_A Antimicrobial peptide l 72.3 2.4 8.1E-05 19.7 1.6 14 104-117 2-15 (26)
16 4dve_A Biotin transporter BIOY 32.9 89 0.003 24.6 5.7 25 91-115 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1e-38 Score=302.87 Aligned_cols=352 Identities=30% Similarity=0.476 Sum_probs=280.4
Q ss_pred chhhhHHHHHHhHHHHhhhccccccchhhHHHhhhhcc--------CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhH
Q 015068 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG 116 (413)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 116 (413)
.+..+.+.++++++.+..++|.++++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 35567777788889999999999999999999888743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhH
Q 015068 117 SLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178 (413)
Q Consensus 117 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 178 (413)
+++++.+++.++.++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc------------chHHHHHhhHHHHHHHHhhhccccCchHHHHHcCChHHHHHHHHHHhCC
Q 015068 179 NQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246 (413)
Q Consensus 179 ~~~~~~~g~~~~~~i~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
.+.+..+|..+++.++... .||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999888776432 5888888888888888888899999999999999999999988876543
Q ss_pred CcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhhcCCCCch--hHHHH
Q 015068 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFG 324 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~ 324 (413)
+...++..+.. +..+ +.++....... ...++..+......+.++.+.+.+.+|.+.+.+..+.+... .....
T Consensus 247 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 247 TLATQAVQEIK-HSLD--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHH-HHHH--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHH-HHHH--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 32211111111 1100 11111111111 22334555566667777778888899999998888776554 45566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 015068 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGA 404 (413)
Q Consensus 325 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
.++..+++.++.+++.||+|||+.++.+...+.++++.++........ ....+...+++..+++.++++
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHHH
Confidence 778889999999999999999999999999998888887766544332 234455566777888999999
Q ss_pred cceeeecCC
Q 015068 405 IPWVIMSEV 413 (413)
Q Consensus 405 i~~~~~~E~ 413 (413)
+.+++.+|+
T Consensus 390 ~~~~~~~E~ 398 (491)
T 4gc0_A 390 VCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999888885
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.3e-31 Score=247.47 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=219.3
Q ss_pred HHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHH
Q 015068 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (413)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (413)
....+++..+..+++.....+..|.+.+++|+|..+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33444555666777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH---HHhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc-----c----
Q 015068 131 II---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N---- 198 (413)
Q Consensus 131 ~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~---- 198 (413)
++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99 88899999999999999999999999999999999999999999999999999999999998776 2
Q ss_pred ---------------------hHHHHHhhHHHHHHHHhhhcc--ccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHH
Q 015068 199 ---------------------WRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255 (413)
Q Consensus 199 ---------------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
||+.|++.+...++..+..++ .||+++. ++ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~-~---------------------- 240 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH-S---------------------- 240 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC-C----------------------
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc-c----------------------
Confidence 999998766655554443322 4555320 00 0
Q ss_pred HHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHhcCchhHHhchHHH-Hhhc-CCCCch--hHHHHHHHHHHH
Q 015068 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQVV 331 (413)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~~~ 331 (413)
++++++.+..++++++++..+...+...+... .......+.+.+ +++. |.++.+ .......++.++
T Consensus 241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 01112233456667776665554444333333 234556677777 7766 887665 666667888999
Q ss_pred HHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Q 015068 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (413)
Q Consensus 332 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 364 (413)
+.++.+++.||++||+.+..+..+..++++++.
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887777666554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=6.8e-31 Score=246.30 Aligned_cols=297 Identities=13% Similarity=0.094 Sum_probs=220.6
Q ss_pred hhhHHHHHHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHH
Q 015068 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (413)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (413)
..+......+++.+..+++...+.+.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3445556666777778888888999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH----hcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c
Q 015068 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (413)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~ 198 (413)
++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHhhHHHHHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHh
Q 015068 199 -WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (413)
Q Consensus 199 -w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (413)
||+.|++.++..++..+ ..+++||+|+....+++++.. . +...+ .++..++.....+...++.+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------N-DYPDD---YNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------C-C----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------c-ccccc---chhhhhcccccccchHHHHH
Confidence 99999988877666544 456678876532211111100 0 00000 00000000111111134445
Q ss_pred hhcchhHHHHHHHHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhc--CCcHHHHH
Q 015068 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (413)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~ 351 (413)
+++..+...+.. +........+..+.|.++++ .|.++.+ ......+++.+++.++.+++.||+ +||+.+..
T Consensus 250 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKLLWYIAIAN----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHHHHHHHHHH----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 444433333322 22222345667778888877 5887665 666777889999999999999999 99988877
Q ss_pred HhHHHH-HHHHH
Q 015068 352 SSSGMA-ASFFL 362 (413)
Q Consensus 352 ~~~~~~-~~~~~ 362 (413)
+..+.. +++++
T Consensus 326 ~~~~~~~~~~~~ 337 (451)
T 1pw4_A 326 FFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766655 44443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.5e-28 Score=224.76 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=199.0
Q ss_pred HHhHHHHhhhccccccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 015068 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (413)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (413)
..++..+..+++...+.+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34555566677888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHH
Q 015068 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (413)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~ 209 (413)
+++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999988877
Q ss_pred HHHHHh-hhccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHH
Q 015068 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (413)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (413)
.++..+ ..+.+||+++... ++++.+.++++.++++..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA-----------------------------------PRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC-----------------------------------CCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCc-----------------------------------ccccHHHHHHHHhcCcchHHHHHHH
Confidence 766665 5566787754100 0011222344555555444444333
Q ss_pred HHHHHHHhcCchhHHhchHHHHhh-cCCCCch--hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015068 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (413)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~ 345 (413)
.+.... ......+.|.++++ .|.++.+ .......++.+++.++.+++.||.++
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 209 IGGLAG----IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHH----HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 23344445555444 4655444 55666678888899999999999887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=6e-25 Score=208.20 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=127.4
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHhHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhh
Q 015068 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (413)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (413)
+|.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh
Q 015068 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 159 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (413)
..+++.|++|+++ |+.++++++.+..+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77788889999999999999998876 89999998776655554443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.86 E-value=1.2e-22 Score=187.98 Aligned_cols=267 Identities=13% Similarity=0.047 Sum_probs=156.4
Q ss_pred cccchhhHH-HhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHH---HHHHHhcCh-hHH
Q 015068 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFL 141 (413)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l 141 (413)
+...+.+|. +++++|.|+.+.|++.+.+.++..++++++|+++||+|||++++.+..+.+++. ....+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 566799999999999999999999999999999999999999998887765532 111222211 123
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHHHHhh
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~~~~~ 216 (413)
...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4456666665555444444444444432 3456666666666677777888777665 7999998877665555444
Q ss_pred hccccCchHHHHHcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhhhHHHHhhhcchhHHHHHHHHHHHHHh
Q 015068 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (413)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
.++.+|+++. +.+.++ + + .++.++.....++++++++..+...+........
T Consensus 184 ~~~~~~~~~~---~~~~~~-----------~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN-----------A-V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-- 235 (417)
T ss_dssp SCSSCCCCSC---SSCSSS-----------S-S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHcCccccc---cccccc-----------c-c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH--
Confidence 4444443210 000000 0 0 0000011112344555555444333322211111
Q ss_pred cCchhHHhchHHHHhhc-CC---CCch--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Q 015068 297 SGINGVLFYSSNIFANA-GI---SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (413)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~---~~~~--~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 363 (413)
+.....+.|.++.+. +. +... .......++.+++.++.++++||+|||+.+..+..+.+++.+.+
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 236 --YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp --HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 122222344444432 21 1111 33444566778889999999999999999887777766655444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=3.8e-20 Score=176.61 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=130.6
Q ss_pred HHHhhhhc------cCcchhHHHHHHHHHHHHHHHHhHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHH
Q 015068 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (413)
Q Consensus 74 ~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 145 (413)
+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34677899 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhH---HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhhh
Q 015068 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (413)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (413)
++.|++.+...+...+++.|++|+++|+++.+. .+....+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876666 8889999999999998766 89999998877666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=6.7e-14 Score=130.63 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=128.5
Q ss_pred ccchhhHHHhhh-hccCcchhHHHHHHHHHHHHHHHHhHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHHhc--ChhHH
Q 015068 68 YSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFSK--DSSFL 141 (413)
Q Consensus 68 ~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~~--~~~~l 141 (413)
......|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+.+ +.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344556666655 899999999999999999999999999999999 99999888877766 6666666653 67778
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhHHHHHHHHhh
Q 015068 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (413)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~ 216 (413)
.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999999998988899999999999999999999999999 999999888766 8999998887776666655
Q ss_pred hccc
Q 015068 217 LFFI 220 (413)
Q Consensus 217 ~~~~ 220 (413)
.+++
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.47 E-value=4.2e-13 Score=123.91 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=116.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhhhhhhhhHHHH
Q 015068 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (413)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (413)
+....++..++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999988888888777778888888888888888877777778899
Q ss_pred HHhcCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhHHHHHHHHhh-hccccCch
Q 015068 163 IAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (413)
Q Consensus 163 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (413)
+.|.+|++.|+++.++ ++....+|..++|.+++.+ +++..|.+.++..++..+. .+..||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4777888999998888766 6788888777766666554 44456543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=2.9e-12 Score=119.08 Aligned_cols=146 Identities=13% Similarity=-0.037 Sum_probs=118.1
Q ss_pred hhhHHH-h-hhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH
Q 015068 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (413)
Q Consensus 71 ~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (413)
...|.+ . +.+|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++...++. -++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence 444444 4 446999999999999999999999999999999999999999999999999998888888765544 4888
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhHHHHHHHHhhhcc
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFF 219 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~~~~~~~~~~~~~~~~~~ 219 (413)
|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+.
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 888888776 5568888888888776 6 888887765554444443333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=1e-12 Score=124.03 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=111.7
Q ss_pred ccchhhHHHhhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHh---c-ChhHHHH
Q 015068 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-DSSFLFM 143 (413)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~~~~l~~ 143 (413)
......+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. . +....++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 33445567788888888788888888889999999999999999999999999988888777665542 1 1122222
Q ss_pred HHHHHhh-hhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------chHHHHHhhHHHHHH
Q 015068 144 GRLLEGF-GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTL 212 (413)
Q Consensus 144 ~r~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------~w~~~~~~~~~~~~~ 212 (413)
.-++... ......+....+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.+.++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222222 22234466778999999999999999999888888888776654332 344567766666666
Q ss_pred HHh-hhccccCch
Q 015068 213 LIP-GLFFIPESP 224 (413)
Q Consensus 213 ~~~-~~~~~~e~~ 224 (413)
..+ .++++||+.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 555 456789984
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=2.9e-12 Score=121.00 Aligned_cols=147 Identities=16% Similarity=0.034 Sum_probs=117.5
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHH-----HHHHHHHHHHHHHHHhc--------
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK-------- 136 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~-------- 136 (413)
..+|.+ .+.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++.....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444 4446777677888889999999999999999999999986655 67777777776666543
Q ss_pred -ChhHHHHHHHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhHHHHHH
Q 015068 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (413)
Q Consensus 137 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~~~~~~~~~~~ 212 (413)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|.+.+...++
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVV 463 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999998877 566777776666555
Q ss_pred HHhhh
Q 015068 213 LIPGL 217 (413)
Q Consensus 213 ~~~~~ 217 (413)
..+..
T Consensus 464 ~~~~~ 468 (491)
T 4aps_A 464 LGIVL 468 (491)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.01 E-value=1.1e-10 Score=106.15 Aligned_cols=133 Identities=18% Similarity=0.106 Sum_probs=102.0
Q ss_pred hhhHHH-hhhhccCcchhHHHHHHHHHHHHHHHHhHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHH--hcChhHHHHH
Q 015068 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMG 144 (413)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~l~~~ 144 (413)
...|.+ ++++|.++.+.+++.+...++..++.++.+++.||+|+|.. .+..+ ...+.. .... .++.+.+.+.
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVP 297 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHH
Confidence 334444 44489999999999999999999999999999999998332 22222 222222 2222 2367777788
Q ss_pred HHHHhhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhh
Q 015068 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (413)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~~~~~ 206 (413)
-++.|++.+...+...+++.|..| ++|+++.++.+....+|..+++.+.+.+ +|+..+++.
T Consensus 298 ~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 298 AALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999999999998 8999999999999999999888888776 455555543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.86 E-value=5.9e-09 Score=99.10 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHH----hhhch----hHHHHHHHHHHHHHHHHHHHh---------cChhHHHHHHHHH
Q 015068 86 EFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLE 148 (413)
Q Consensus 86 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 148 (413)
..+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++.-++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666677777666654 55543 356677888888887777664 3667788889999
Q ss_pred hhhhhhhhhhHHHHHHhcCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------ch---------HHHHHhhHHHHHHH
Q 015068 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW---------RVLAVLGVLPCTLL 213 (413)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w---------~~~~~~~~~~~~~~ 213 (413)
|++.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+ +| +..|++.+...++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988766 24 33355555555555
Q ss_pred Hhhhcc
Q 015068 214 IPGLFF 219 (413)
Q Consensus 214 ~~~~~~ 219 (413)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 444333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=72.28 E-value=2.4 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.5
Q ss_pred hHHHHHhhhchhHH
Q 015068 104 ASGQIAEYIGRKGS 117 (413)
Q Consensus 104 ~~g~l~dr~Grr~~ 117 (413)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999875
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=32.95 E-value=89 Score=24.58 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhchh
Q 015068 91 GSLANVGAMVGAIASGQIAEYIGRK 115 (413)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr 115 (413)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3557788888899999999987543
Done!