BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015069
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 177/289 (61%), Gaps = 18/289 (6%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAAL 100
D R++YVGN+ VT L+ ++FS GP + CK+I + S+ Y FV++++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 101 AIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + + F+ F
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 220 QSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 279
Q +++K + ++ N+ +P+N TVY G ++S +T + + F
Sbjct: 184 QENNTKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPF-- 228
Query: 280 GTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
G I ++RV +KG+ FVR+STH AA AI N + G +KC WG +
Sbjct: 229 GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 277
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 42/217 (19%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186
ED ++VG+LS +VT+ + FS C +++ + + + FV F D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDA 246
A +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN----------------------- 95
Query: 247 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYST 300
+ V+VG+LS E+T+ D+ F G I D RV +D KG+GFV +
Sbjct: 96 ------HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARVVKDMATGKSKGYGFVSFYN 147
Query: 301 HPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 337
+A AI + L G+ I+ +W ++ PP ST
Sbjct: 148 KLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 183
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 35/306 (11%)
Query: 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---------------- 86
D R++YVGN+ VT L+ ++FS GP + CK+I + S
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
Query: 87 ---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-SSQREDTSGHFNVFVGDLSP 142
Y FV++++ R AA A+ +NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSP
Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 143 EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202
E+T + + F+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 203 QIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLS 262
QIR NWA + + Q +++K + ++ N+ +P+N TVY G ++
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQL---------RFEDVVNQSSPKN----CTVYCGGIA 230
Query: 263 SEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322
S +T + + F G I ++RV +KG+ FVR+STH AA AI N + G +K
Sbjct: 231 SGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Query: 323 CSWGSK 328
C WG +
Sbjct: 289 CYWGKE 294
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 55/232 (23%)
Query: 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR----SRGFG----- 177
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 178 ------FVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELT 231
FV F DA +A+ +NG+ + ++++ NWA S +K +S+
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--TPSSQKKDTSN-------- 112
Query: 232 NGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 290
+ V+VG+LS E+T+ D+ F G I D RV +D
Sbjct: 113 ---------------------HFHVFVGDLSPEITTEDIKSAFAPF--GKISDARVVKDM 149
Query: 291 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSST 337
KG+GFV + +A AI + L G+ I+ +W ++ PP ST
Sbjct: 150 ATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKST 200
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 171/295 (57%), Gaps = 29/295 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 273
+ S++K Q +E +++P TVY G ++S +T + +
Sbjct: 187 PAPKSTYESNTK-------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQT 233
Query: 274 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F G I ++RV DKG+ FVR+S+H AA AI N + G +KC WG +
Sbjct: 234 FSPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
NG+ + ++++ NWA T +K+ + S +VV S+D +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVVSTQR--SQD---------------HF 106
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 308
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 309 QMGNARILCGKPIKCSWGSKPTPPGTSST 337
Q + L G+ I+ +W ++ PP ST
Sbjct: 165 QQMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 173/295 (58%), Gaps = 29/295 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTL 105
+++YVGN+ VT AL+ ++FS GP + CK+I + Y FV++ + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGRHIFGQPIKVNWAYA-SSQREDTSG-----------HFNVFVGDLSPEVTDATLFACF 153
NGR I G+ +KVNWA SSQ++DTS HF+VFVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+ F SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA +
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 214 TSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 273
+ S++K +S D E N+ +P N TVY G ++S +T + +
Sbjct: 187 PAPKSTYESNTKQ-------LSYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQT 233
Query: 274 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F G I ++RV DKG+ FVR+++H AA AI N + G +KC WG +
Sbjct: 234 FSPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKE 286
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+LS +VT+A + FS C + +++ D T + + FV F A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
NG+ + ++++ NWA T +K+ + S +VV S+D +
Sbjct: 67 NGRKIMGKEVKVNWAT---TPSSQKKDTSSSTVVSTQR--SQD---------------HF 106
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 308
V+VG+LS E+T+ D+ F G I D RV +D KG+GFV + +A AI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 309 QMGNARILCGKPIKCSWGSKPTPPGTSST 337
Q + L G+ I+ +W ++ PP ST
Sbjct: 165 QQMGGQWLGGRQIRTNWATR-KPPAPKST 192
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI--KKDKS-SYGFVDYFDRRSAALA 101
++ R +YVGN+ +T +L++ F GP+ K++ K +K+ +Y FV+Y A +A
Sbjct: 72 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA 131
Query: 102 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+ TLNG+ I +K+NWA+ SQ+ + FN+FVGDL+ V D TL F FP+
Sbjct: 132 LQTLNGKQIENNIVKINWAF-QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS 190
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
VMWD +TG SRG+GFVSF +Q+DAQ+A++ + G+ L R +R NWAAK
Sbjct: 191 GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG+L +T+ L F V ++ ++M D K ++ + FV + DA A+ L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
NGK + N ++ NWA + Q+ S++D
Sbjct: 136 NGKQIENNIVKINWAFQ--------------------------SQQSSSDDT-------F 162
Query: 255 TVYVGNLSSEVTSVDLHRHFHA----LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
++VG+L+ V L F L + D++ +G+GFV +++ +A A+
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 222
Query: 311 GNARILCGKPIKCSWGSK 328
+ L G+P++ +W +K
Sbjct: 223 MQGQDLNGRPLRINWAAK 240
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
P+ TT Y+GN+ T DL F G I D + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 395
Query: 311 GNARILCGKPIKCSWGSK 328
G+ ++ WG +
Sbjct: 396 LANFPFQGRNLRTGWGKE 413
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-----FGFVRYSTHPEAALAIQ 309
+YVGNL +T L ++F G I ++++ DK + FV Y +A +A+Q
Sbjct: 76 VLYVGNLDKAITEDILKQYFQ--VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 133
Query: 310 MGNARILCGKPIKCSW 325
N + + +K +W
Sbjct: 134 TLNGKQIENNIVKINW 149
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 151/291 (51%), Gaps = 11/291 (3%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAI 102
R++++G++ V L FS TG L K+I+ + YGF+++ +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 103 VTLNGRHIFGQPI--KVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV-FPT 158
T NG + G + ++NWA + S Q+ D ++FVGDL+P+VTD L F V + +
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TGRS+G+GFV F + + A+ ++NG + R +R + A G +
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 202
Query: 219 KQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALC 278
+Q +K+V +T + ++ PE++ TT+ V NL VT +L + F L
Sbjct: 203 QQYV-TKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQL- 260
Query: 279 VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329
G + V++ KG+G+V++ T P A A+Q +++ + ++ SW P
Sbjct: 261 -GEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 44/206 (21%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKS----SYGFVDYFDR 95
+ DA S++VG++ P VT+ LLQE F + G K++ + YGFV + +
Sbjct: 109 KVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEE 168
Query: 96 RSAALAIVTLNGRHIFGQPIKVN--------------------------------WAYAS 123
A+ +NG + +P++++ AY +
Sbjct: 169 SERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVA 228
Query: 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183
D + + V +L VT+ L FS V++ K ++G+G+V F+
Sbjct: 229 PPESDVTCT-TISVANLDQNVTEEELKKAFSQL-----GEVIY-VKIPATKGYGYVQFKT 281
Query: 184 QEDAQSAINDLNGKWLGNRQIRCNWA 209
+ A+ A+ + G+ +G + +R +W+
Sbjct: 282 RPSAEEAVQRMQGQVIGQQAVRISWS 307
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 156/293 (53%), Gaps = 19/293 (6%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++++G++ + + L FS G + K+I+ ++ YGFV++ +A +
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 104 TLNGRHI--FGQPIKVNWAYASS--QREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+ NG + QP ++NWA S+ +R +T F++FVGDL+ +VTD L F S +P+
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
A+V+ D TG S+G+GFV F ++ + A+ ++NG + +R +R A S E
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHE 263
Query: 219 KQSSDSKSVVELTNGISEDG--QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 276
+ SS + V L+ G + +G S D +N TT++VG L SEVT +L + F+
Sbjct: 264 QYSSQA---VILSGGYASNGAATHGSQSDGDSSN---TTIFVGGLDSEVTDEELRQSFNQ 317
Query: 277 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329
G + V++ KG GFV++S A AIQ + I+ + ++ SWG P
Sbjct: 318 F--GEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSP 368
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 42/219 (19%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDR 95
R + + S++VG++ VT+ +L++ F+S P L+G K++ + YGFV + D
Sbjct: 170 RAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDE 229
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWA---------------------YAS-------SQRE 127
+ A+ +NG + + +++ A YAS SQ +
Sbjct: 230 SERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSD 289
Query: 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDA 187
S + +FVG L EVTD L F+ F ++ +G GFV F ++ A
Sbjct: 290 GDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSDRSSA 343
Query: 188 QSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKS 226
Q AI L+G +G + +R +W G + +++ +DS S
Sbjct: 344 QEAIQKLSGAIIGKQAVRLSW---GRSPANKQMRTDSGS 379
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRR 96
R ++++VG++ + L FS TG + K+I+ +S YGFV++ R
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 97 SAALAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFA 151
+A + +G + QP ++NWA S+ +R +G +VFVGDLSP+VTD L
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 152 CFS-VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
FS +P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + NRQ+R A
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDL 270
+++Q S ++ +G + S D N T++VG + +V DL
Sbjct: 281 PKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN---ATIFVGGIDPDVIDEDL 337
Query: 271 HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330
+ F G + V++ KG GFV+++ A AI+ N ++ ++ SWG P
Sbjct: 338 RQPFSQF--GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPN 395
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
ST +++VG I P V + L++ FS G + K+ + K GFV + DR+SA AI
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK---GCGFVQFADRKSAEDAIE 374
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
+LNG I ++++W + ++ R D+ +N
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 28/296 (9%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAA 99
A RS+++G++ P + L VF TG K+I+ ++ Y GF+++ + +A
Sbjct: 76 AGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAE 135
Query: 100 LAIVTLNGRHIFG--QPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACF-S 154
+ T NG + Q ++NWA A +R+ VFVGDL+P+VTD L F +
Sbjct: 136 RNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKA 195
Query: 155 VFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214
V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ +R +R AA
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAA---- 251
Query: 215 SGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 274
+K + + ++ Q S E P N TT++VG + VT DL F
Sbjct: 252 ---------NKKPLTMQPASYQNTQGNSGESDPTN----TTIFVGAVDQSVTEDDLKSVF 298
Query: 275 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330
G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P+
Sbjct: 299 GQF--GELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPS 352
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 44/219 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
+++GDL P + + L F + + A+V+ +++ G S G+GF+ F N A+ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 195 NGKWL--GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQ 252
NG + + R NWA GA G+ +Q+ + PE+
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGA--GERRQA-----------------------EGPEH--- 173
Query: 253 YTTVYVGNLSSEVTSVDLHRHFHAL-----CVGTIEDVRVQRDKGFGFVRYSTHPEAALA 307
TV+VG+L+ +VT L F A+ + D R KG+GFVR++ E A
Sbjct: 174 --TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 308 IQMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPH 346
+ N + +P++ T P + PL PA +
Sbjct: 232 MTEMNGQYCSSRPMR-------TGPAANKKPLTMQPASY 263
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
T +++VG + VT L+ VF G L K+ + GFV Y +R A A+ L
Sbjct: 276 TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC--GFVQYANRACAEQALSVL 333
Query: 106 NGRHIFGQPIKVNWAYASSQRE 127
NG + GQ I+++W + S ++
Sbjct: 334 NGTQLGGQSIRLSWGRSPSNKQ 355
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAI 102
++++VG++ + L FS T + K+I+ ++ YGFV++ R +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 103 VTLNGRHI--FGQPIKVNWAYASSQREDTSGH---FNVFVGDLSPEVTDATLFACFS-VF 156
+ +G + QP ++NWA S+ + S + ++FVGDL+P+V+DA L F+ +
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRY 237
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA--KGAT 214
P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG + +RQ+R A + A
Sbjct: 238 PSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAA 297
Query: 215 SGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 274
G + S + L G +G S D NN +T++VG L ++VT DL + F
Sbjct: 298 YGQQNGS----QALTLAGGHGGNG---SMSDGESNN---STIFVGGLDADVTEEDLMQPF 347
Query: 275 HALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329
G + V++ KG GFV+++ A AI N ++ ++ SWG P
Sbjct: 348 SDF--GEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIV 103
S +++VG + VT L + FS G + K+ + K GFV + +R+SA AI
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK---GCGFVQFANRQSAEEAIG 380
Query: 104 TLNGRHIFGQPIKVNWAYASSQ--REDTSGHFN 134
LNG I ++++W + ++ R D+ +N
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 29/294 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++H + A L F+S E K+I+ + YGFV++ A
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDLSP+V+D L FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 216 GDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 275
G ++Q + NG PE + TT++VG L S VT DL + F+
Sbjct: 281 GYQQQGG------YMPNGTLT---------RPEGDIMNTTIFVGGLDSSVTDEDLKQPFN 325
Query: 276 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329
G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 326 EF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 377
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
S++VG++ P V++ LL E FS P ++ K++ + YGFV + D A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 104 TLNGRHIFGQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTD 146
+NG + +++ A ++ E + +FVG L VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206
L F+ F ++ +G GFV F N+ +A+ A+ LNG +G + +R
Sbjct: 318 EDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRL 371
Query: 207 NWAAKGAT 214
+W A
Sbjct: 372 SWGRNPAN 379
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ F+ G + K+ + K GFV + +R +A A+ LNG
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 361
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 391
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 239 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 292
Q + N+ N + T++VG+L + L+ F + I V+V R+K G
Sbjct: 86 QSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEG 145
Query: 293 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 327
+GFV + +H A ++ N + +P + +W S
Sbjct: 146 YGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWAS 182
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 150/297 (50%), Gaps = 28/297 (9%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAA 99
AS +S+++G++ + + VF+ +G K+I+ YGF+++ A
Sbjct: 56 ASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAE 115
Query: 100 LAIVTLNGRHI--FGQPIKVNWAYASS--QREDTSG-HFNVFVGDLSPEVTDATLFACF- 153
+ T NG + Q ++NWA A + +R T G +FVGDL+PEVTD L F
Sbjct: 116 RVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 154 SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213
+V+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG++ R +R AA
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA--- 232
Query: 214 TSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 273
+K+ + + + ++ Q +A +N+P TT++VG L + VT +L
Sbjct: 233 ----------NKNALPMQPAMYQNTQ---GANAGDNDPNNTTIFVGGLDANVTDDELKSI 279
Query: 274 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330
F G + V++ K GFV+Y+ A A+ + N L G+ I+ SWG P
Sbjct: 280 FGQF--GELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPN 334
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 49 SVYVGNIHPQVTNALLQEVFSST-GPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIV 103
+++VG++ P+VT+ +L + F + G ++G K++ + YGFV + D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 104 TLNGRHIFGQPIKVNWA------------YASSQR----EDTSGHFNVFVGDLSPEVTDA 147
+NG++ +P+++ A Y ++Q ++ + +FVG L VTD
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 148 TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207
L + F F ++ ++ G FV + N+ A+ A++ LNG LG + IR +
Sbjct: 275 ELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Query: 208 WAAKGATSGDEKQ 220
W D+ Q
Sbjct: 329 WGRSPNKQSDQAQ 341
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 42/323 (13%)
Query: 20 YHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL 79
++P A P ++P A R++++G++ + L F+ TG + K+
Sbjct: 43 WNPQAAAPPSVQPTT---------ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKV 93
Query: 80 IKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASS-QREDTSG 131
I+ ++ YGF+++ +A + T N I P ++NWA SS + D S
Sbjct: 94 IRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSP 153
Query: 132 HFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190
+ +FVGDL+ +VTD L F + +P+ A+V+ D+ TGR++G+GFV F ++ + A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 191 INDLNGKWLGNRQIRCNWAA--KGATSG-DEKQSSDSKSVVELTNGISEDGQEKSNEDAP 247
+ ++NG R +R AA KG T D QSS + G++ D
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA--------GVTTD---------- 255
Query: 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALA 307
N+P TTV+VG L + VT L F G I V++ K GFV++S A A
Sbjct: 256 -NDPNNTTVFVGGLDASVTDDHLKNVFSQY--GEIVHVKIPAGKRCGFVQFSEKSCAEEA 312
Query: 308 IQMGNARILCGKPIKCSWGSKPT 330
++M N L G ++ SWG P+
Sbjct: 313 LRMLNGVQLGGTTVRLSWGRSPS 335
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR 108
+V+VG + VT+ L+ VFS G + K+ + GFV + ++ A A+ LNG
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC--GFVQFSEKSCAEEALRMLNGV 319
Query: 109 HIFGQPIKVNWAYASSQRE 127
+ G ++++W + S ++
Sbjct: 320 QLGGTTVRLSWGRSPSNKQ 338
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 29/294 (9%)
Query: 48 RSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKDKSS----YGFVDYFDRRSAALA 101
++++VG++ + A L F+S E K+I+ + YGFV++ A
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 102 IVTLNGRHI--FGQPIKVNWAYASS---QREDTSGHFNVFVGDLSPEVTDATLFACFS-V 155
+ NG + QP ++NWA S+ + E+ ++FVGDL+P+V+DA L FS
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+ A+V+ D TGRS+G+GFV F ++ + A+ ++NG +R +R A T+
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 216 GDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 275
G ++Q G G +E N TT++VG L S VT DL + F
Sbjct: 283 GYQQQG-----------GYMPSGAFTRSEGDTIN----TTIFVGGLDSSVTDEDLKQPFS 327
Query: 276 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329
G I V++ KG GFV++ P A A++ N ++ + ++ SWG P
Sbjct: 328 EF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 379
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+++VG + VT+ L++ FS G + K+ + K GFV + +R +A A+ LNG
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK---GCGFVQFVNRPNAEEALEKLNG 363
Query: 108 RHIFGQPIKVNWAYASSQREDTSGHFNVFV 137
I Q ++++W + ++ + N +V
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGNQWV 393
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 239 QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------G 292
Q + N+ N + T++VG+L + + L+ F + I ++V R+K G
Sbjct: 88 QSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEG 147
Query: 293 FGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGS 327
+GFV + +H A +Q N + +P + +W S
Sbjct: 148 YGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWAS 184
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 141/300 (47%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+QS EL + QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 273 HFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F L GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 131/292 (44%), Gaps = 47/292 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S SY ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F E A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAF--GN 216
Query: 282 IEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 217 TLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 147/309 (47%), Gaps = 26/309 (8%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDY 92
N P + + RS+++G++ + L F TG L K+I+ ++ YGF+++
Sbjct: 73 NPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEF 132
Query: 93 FDRRSAALAIVTLNGRHI--FGQPIKVNWA-YASSQREDTSGHFNVFVGDLSPEVTDATL 149
+A + T NG + Q ++NWA + +R D S +FVGDL+ +VTD L
Sbjct: 133 RSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYIL 192
Query: 150 FACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208
F SV+ + A+V+ D+ TGRS+G+GFV F ++ + A+ ++NG R +R
Sbjct: 193 QETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGP 252
Query: 209 AAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV 268
AA G ++++ + T G E++P TT++VG L V
Sbjct: 253 AANKKPVGTPQKATYQNP--QATQG--------------ESDPNNTTIFVGGLDPTVAEE 296
Query: 269 DLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
L + F G + V++ K GFV++ T A A+ N L G+ I+ SWG
Sbjct: 297 HLRQVFSPY--GELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRS 354
Query: 329 PTPPGTSST 337
P+ T T
Sbjct: 355 PSSKQTDQT 363
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D TGRSRGFGFV++ N E+AQ A++++NGK + R I A K
Sbjct: 211 FSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q EL + QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 273 HFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPY--GTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 131/292 (44%), Gaps = 47/292 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAF--GN 216
Query: 282 IEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V+V R +GFGFV Y H EA A+ N + + G+ I K
Sbjct: 217 TLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 130/291 (44%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP T A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 139/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 ANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +GRSRGFGFV++ N E+AQ A+ ++NGK + R + A K
Sbjct: 211 FSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q EL + QE+ N Q +YV NL + L +
Sbjct: 270 I----ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRK 312
Query: 273 HFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPY--GTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 131/292 (44%), Gaps = 47/292 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+Y+G++HP VT A+L E FS GP+ C+ I +S Y ++++ A A+ T
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ SRG+GFV F QE A AI +NG L +R++ S E++
Sbjct: 128 CKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH----FKSRREREL 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
V+E TN VY+ N ++ L F A G
Sbjct: 182 EYGAKVMEFTN-----------------------VYIKNFGEDMDDKRLKEIFSAF--GN 216
Query: 282 IEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V+V R +GFGFV Y H EA A+ N + + G+ + K
Sbjct: 217 TLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVSTKPLYVALAQRKEERK 375
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +++V N+ + N L + S+ G + C ++ + S YGFV + +
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG----HF-NVFVGDLSPEVTDATLFAC 152
A AI +NG + G+ + V + +RE G F NV++ + ++ D L
Sbjct: 151 AERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F F +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K
Sbjct: 211 FGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRTFEQMKQDRITRY------QVVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 AFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 128/291 (43%), Gaps = 45/291 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + LI S+Y +V++ + A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+FV +L + + L+ S F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
V+ D+ S+G+GFV F E A+ AI +NG L R++ S E+++
Sbjct: 128 CNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQ----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E N VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFPN-----------------------VYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V + D + KGFGFV + H +A A+ N + L GK I K
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 251 PQYTT--VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHP 302
P Y T +YVG+L +VT L+ F G I +R+ RD + +V +
Sbjct: 6 PSYPTASLYVGDLHPDVTEAMLYEKFSP--AGPILSIRICRDLITSGSSNYAYVNFQHTK 63
Query: 303 EAALAIQMGNARILCGKPIKCSWGSK 328
+A A+ N ++ GKP++ W +
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQR 89
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 28/298 (9%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVT 104
++++G + P VT A +Q+V+++ G KLI+ + Y FV++ A+ A+ +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 105 LNGRHIFG--QPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPT 158
+N + I G K+NWA RE + + +++FVGDLSP V + +++ F S + +
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 159 CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 218
C A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G+R IR A + +
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA--- 269
Query: 219 KQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQY-----TTVYVGNLSSEVTSVDLHRH 273
V N + A + PQ+ +TV+VG LS V+ +L
Sbjct: 270 -------HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYL 322
Query: 274 FHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331
F G I V++ KG GFV++ A +AI L I+ SWG P
Sbjct: 323 FQNF--GEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNP 378
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 35/209 (16%)
Query: 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180
Y SS+ E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 181 FRNQEDAQSAINDLNGKWLG-NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQ 239
F + +A SA++ N G N + NWA+ G G+ E
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGG--------------------GLREKSI 180
Query: 240 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH-----RHFHALCVGTIEDVRVQRDKGFG 294
K++E +++VG+LS V D++ R+ + D + +G+G
Sbjct: 181 SKASE---------YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
Query: 295 FVRYSTHPEAALAIQMGNARILCGKPIKC 323
FVR++ + A+ +I +PI+
Sbjct: 232 FVRFTDENDQKSALAEMQGQICGDRPIRV 260
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 130/283 (45%), Gaps = 47/283 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPL---EGCKLIKKDKS-SYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ C+ + +S Y ++++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ SRGFGFV F E AQ AIN +NG L +R++ S E+++
Sbjct: 128 CKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH----FKSRREREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
+E TN +YV NL +V L F G
Sbjct: 182 ELGARALEFTN-----------------------IYVKNLPVDVDEQGLQDLFSQF--GK 216
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 319
+ V+V RD + FGFV + H EA A+ N + + G+
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 27/298 (9%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK+ + S +GFV + +
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI T+NG + + + V + +RE G N++V +L +V + L
Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K
Sbjct: 211 FSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQN-------ELKRRFEQMKQDRLRRY------QGVNLYVKNLDDSIDDDKLRK 312
Query: 273 HFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F V T V + KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 255 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
++YVG+L +VT L+ F L + DV +R G+ ++ + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 311 GNARILCGKPIKCSWGSK 328
N +L G+PI+ W +
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ FS G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGTKPLYVALAQRKEERK 375
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 129/285 (45%), Gaps = 47/285 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCK-LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP + C+ +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+PI++ W SQR+ + SG NVF+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+ FV F QE A AI +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
E TN VY+ N EV L F G
Sbjct: 182 ELGAKAKEFTN-----------------------VYIKNFGEEVDDESLKELFSQF--GK 216
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321
V+V RD KGFGFV Y H +A A++ N + + GK I
Sbjct: 217 TLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 136/300 (45%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S +V++ N+ + N L + FS+ G + CK++ + S Y FV + + +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + EV D +L
Sbjct: 151 ADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKEL 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +VM D G+S+GFGFVS+ EDA A+ ++NGK + + I A K
Sbjct: 211 FSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + QE+ + Q +Y+ NL + L +
Sbjct: 270 V----ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFSPF--GSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 370
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 255 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
++YVG+L S+VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 311 GNARILCGKPIKCSWGSK 328
N ++ GKPI+ W +
Sbjct: 72 MNFDVIKGKPIRIMWSQR 89
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++Y+ N+ + + L++ FS G + K++ +D S +GFV + A A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVGSKPLYVALAQRKEERK 375
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 42/276 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P +T ALL +VFS GP+ ++ + K Y +V+Y D + AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 105 LNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163
LN I G+P ++ W+ + R+ SG N+F+ +L P + + L FS F +
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
V D+ G SRGFGFV F+ + DA+ AI +NG + ++ + A D
Sbjct: 169 VALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEV---YVAMHVPKKDR----- 219
Query: 224 SKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 283
IS+ + K+N +T +YV N+ E T + + F G I
Sbjct: 220 ----------ISKLEEAKAN---------FTNIYVKNIDVETTDEEFEQLFSQY--GEIV 258
Query: 284 DVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 314
+++D KGFGFV + H AA A++ N +
Sbjct: 259 SAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGK 294
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 33/293 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L E FS+ G + CK+ + + +GFV + + A AI +
Sbjct: 139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + G + V R E+ +F N++V ++ E TD FS +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D + G+ +GFGFV+F + A A+ +LNGK ++ + A K +E +
Sbjct: 259 SAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELK 317
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E Q +++ NL + L F G
Sbjct: 318 KQYEQYRLEKLAKF-----------------QGVNLFIKNLDDSIDDEKLKEEFAPY--G 358
Query: 281 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
TI RV RD KGFGFV +S+ EA A+ N +I+ GKP+ + +
Sbjct: 359 TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTH 301
ENN ++YVG L +T L+ F L G I +RV RD G+ +V Y+ +
Sbjct: 46 ENN--NASLYVGELDPNITEALLYDVFSPL--GPISSIRVCRDAVTKASLGYAYVNYTDY 101
Query: 302 PEAALAIQMGNARILCGKPIKCSWGSK 328
AIQ N + G+P + W +
Sbjct: 102 EAGKKAIQELNYAEINGRPCRIMWSER 128
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 22/296 (7%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAI 102
++++G++ P + +Q++++S K+++ SS Y FV + +A A+
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 103 VTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SV 155
+ N I G K+NWA + + F++FVGDL P D+ LF F S+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 156 FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215
+P+C+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A S
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA-----S 260
Query: 216 GDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 275
+ S + S + + + + Q N+D +P TTV+VG L+S ++ DL F
Sbjct: 261 PKSRASIAADSALGIVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQ 318
Query: 276 ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331
G I ++++ KG GFV+YS A AI ++ I+ +WG P
Sbjct: 319 PF--GRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLP 372
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEW 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+SRGFGFVSF EDAQ A++D+NGK L + I A K
Sbjct: 211 FGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F G+I +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EFTPF--GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 131/284 (46%), Gaps = 45/284 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++HP VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF----HAL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 321
V + D + +GFGFV + H +A A+ N + L GK I
Sbjct: 219 SVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 255 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 311 GNARILCGKPIKCSWGSK 328
N ++ GKP++ W +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F+ G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 31/300 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRS 97
P S ++++ N+ + N L + FS+ G + CK++ + S YGFV + + +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 150
Query: 98 AALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFAC 152
A AI +NG + + + V + +RE G NV++ + ++ D L
Sbjct: 151 AERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + +VM D G+S+GFGFVSF EDAQ A++++NGK + + + A K
Sbjct: 211 FGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
E+Q+ EL + Q++ Q +YV NL + L +
Sbjct: 270 V----ERQT-------ELKRKFEQMKQDRITRY------QGVNLYVKNLDDGIDDERLRK 312
Query: 273 HFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F L GTI +V R KGFGFV +S+ EA A+ N RI+ KP+ + +
Sbjct: 313 EF--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 45/282 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++H VT A+L E FS GP+ + +I + Y +V++ A A+ T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F
Sbjct: 72 MNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR----FKSRKEREA 181
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH----AL 277
E TN VY+ N ++ L F AL
Sbjct: 182 ELGARAKEFTN-----------------------VYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK 319
V + D + KGFGFV + H +A A+ N + + GK
Sbjct: 219 SVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 255 TVYVGNLSSEVTSVDLHRHFH----ALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310
++YVG+L +VT L+ F L + D+ +R G+ +V + +A A+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 311 GNARILCGKPIKCSWGSK 328
N ++ G+P++ W +
Sbjct: 72 MNFDVIKGRPVRIMWSQR 89
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLN 106
++YV N+ + + L++ F G + K++ + S +GFV + A A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 107 GRHIFGQPIKVNWAYASSQRE 127
GR + +P+ V A +R+
Sbjct: 355 GRIVATKPLYVALAQRKEERQ 375
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 50/294 (17%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +A AI
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+ ++ W SQR+ + G N+F+ +L P++ + L+ FSVF
Sbjct: 96 LNFTPIKGKLCRIMW----SQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
++V D+ TG+S+GFG+V F E A AI+ LNG L ++I
Sbjct: 152 SKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPH------------ 198
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV-- 279
+S+ +E E+ N +T VY+ N+++E T + F L
Sbjct: 199 ------------LSKKERESKFEEMKAN---FTNVYIKNINTETTD----KEFEELVAKF 239
Query: 280 GTIEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
G + V ++R +KGFGFV + H +A ++ N G+P+ + K
Sbjct: 240 GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 130/295 (44%), Gaps = 33/295 (11%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRR 96
P ++++ N+HP + N L + FS G + K+ + +G+V + +
Sbjct: 115 PSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDE 174
Query: 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFA 151
SA+ AI LNG + GQ I V + +RE + +F NV++ +++ E TD
Sbjct: 175 SASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEE 234
Query: 152 CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ F +D+ V+ G ++GFGFV+F N EDA + +LN + + N A K
Sbjct: 235 LVAKFGK-TDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Query: 212 GATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 271
E+Q EL EK + Q +++ NL + L
Sbjct: 294 KY----ERQQ-------ELKKQYEATRMEKMAK------YQGINLFIKNLDDSIDDKKLE 336
Query: 272 RHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQMGNARILCGKPI 321
F GTI +V + KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 337 EEFAPY--GTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 389
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 224 SKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE 283
K+ +L N +D QE +NE+ ++ ++YVG+L V+ L+ F +G +
Sbjct: 6 EKTAEQLENLSLQDKQEGTNEEN-QSETVSASLYVGDLDPSVSEAHLYDIFSP--IGAVS 62
Query: 284 DVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
+RV RD G+ +V ++ H A AI+ N + GK + W +
Sbjct: 63 SIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR 113
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 42/294 (14%)
Query: 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAAL 100
++ S+YVG++ P V+ A L ++FS G + ++ I K Y +V++ D +
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 101 AIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC 159
AI LN I G+ ++ W+ S R+ SG N+F+ +L P++ + L+ FSVF
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDI 152
Query: 160 SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK 219
+++ D+ G+S+GFGFV F + A+ AI+ LNG L ++I + A + +
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI---YVAPHLS----R 204
Query: 220 QSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 279
+ DS+ E YT +YV N++SE T F
Sbjct: 205 KERDSQ--------------------LEETKAHYTNLYVKNINSETTDEQFQELFAKF-- 242
Query: 280 GTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
G I +++D KGFGFV Y H +A A++ N L G+ + K
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 33/286 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS G + K+ + +GFV + + +A AI L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 106 NGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + GQ I V + SQ E+T H+ N++V +++ E TD F+ F
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D G+ +GFGFV++ EDA A+ LN L ++ A K
Sbjct: 247 SASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK--------- 296
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
++ V++ Q ++ Q ++V NL V L F G
Sbjct: 297 KNERMHVLK--------KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPY--G 346
Query: 281 TIEDVRVQR-----DKGFGFVRYSTHPEAALAIQMGNARILCGKPI 321
TI +V R KGFGFV +ST EA AI N +I+ GKP+
Sbjct: 347 TITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++YV NI+ + T+ QE+F+ GP+ L K +GFV+Y A A+ L
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 106 NGRHIFGQPIKVNWAYASSQR-------------EDTSGH--FNVFVGDLSPEVTDATLF 150
N + G+ + V A ++R E + + N+FV +L V D L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ + T + A+VM + G+S+GFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+++V N+ V + L+E F+ G + K+++ + +GFV + A AI
Sbjct: 323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N + + G+P+ V A +QR+D
Sbjct: 383 NQQIVAGKPLYV----AIAQRKDV 402
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 129/297 (43%), Gaps = 46/297 (15%)
Query: 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAA 99
A S+YVG ++P V A L E+FS G + ++ + K Y +V+Y
Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGE 122
Query: 100 LAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVF 156
AI LN + G+P ++ W SQR+ + SG N+F+ +L P + + L FS F
Sbjct: 123 KAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAF 178
Query: 157 PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSG 216
+V D G+S+ FGFV + +E AQ+AI +NG L +R++ G
Sbjct: 179 GKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV---------G 228
Query: 217 DEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 276
D +S +E E YT +YV N+ T + F
Sbjct: 229 KHVSKKDRESKLE------------------EMKANYTNIYVKNIDLAYTEKEFEELFAP 270
Query: 277 LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
G I + +++D KGFGFV + H AA A++ N + + G+ I K
Sbjct: 271 F--GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 39/304 (12%)
Query: 43 DASTCRS----VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDR 95
D S RS +++ N+HP + N L + FS+ G + K+ D +GFV Y
Sbjct: 146 DPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETE 205
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLF 150
+A AI ++NG + + + V + RE + + N++V ++ T+
Sbjct: 206 EAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFE 265
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F + + D + G+S+GFGFV+F E A A+ +LN K + ++I A
Sbjct: 266 ELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 211 KGATSGDE-KQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 269
K +E K+ ++ + +L+ Q ++V NL ++ S
Sbjct: 325 KKRERTEELKKQYEAVRLEKLSKY------------------QGVNLFVKNLDEQIDSEK 366
Query: 270 LHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324
L F GTI +V D KGFGFV +ST EA AI N R++ GKP+ +
Sbjct: 367 LEEEFKPF--GTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVA 424
Query: 325 WGSK 328
+
Sbjct: 425 LAQR 428
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ Q+ + L+E F G + K++ D +GFV + A AI +
Sbjct: 352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEM 411
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R + G+P+ V A +QR+D
Sbjct: 412 NQRMVNGKPLYV----ALAQRKDV 431
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 35/294 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 106 NGRHIFGQPIKVNWAYASSQRE----DTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + RE + +F NV+V +L+PEV +A F F +
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVT 266
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-K 219
+ DQ+ G+SRGFGFV+F N E A +A+ ++N K + +++ A K DE K
Sbjct: 267 SVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELK 325
Query: 220 QSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 279
+ +S + +L+ Q ++V NL + S L F
Sbjct: 326 RLYESTRLEKLSKY------------------QGVNLFVKNLDDSIDSEKLEEEFKPF-- 365
Query: 280 GTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
GTI RV D KGFGFV +S+ EA AI N R++ GKP+ + +
Sbjct: 366 GTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 46/291 (15%)
Query: 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTL 105
+YVG ++P V ALL E+FS G + ++ + K Y +V++ + AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N + G+P ++ W SQR+ + +G N+F+ +L P + + L FS F
Sbjct: 120 NYSLVDGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D+ G+S+ FGFV + E A++AI ++NG L +R++ G
Sbjct: 176 KVATDE-LGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV---------GKHVSKR 225
Query: 223 DSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 282
D +S E E +T VYV NL+ EV + F G +
Sbjct: 226 DRESKFE------------------EMKANFTNVYVKNLAPEVDNAKFEEIFKPF--GPV 265
Query: 283 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
V ++ D +GFGFV + H A A++ N + + G+ + K
Sbjct: 266 TSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+++V N+ + + L+E F G + +++ D +GFV + A AI +
Sbjct: 343 NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEM 402
Query: 106 NGRHIFGQPIKVNWAYASSQREDT 129
N R I G+P+ V A +QR+D
Sbjct: 403 NQRMIQGKPLYV----ALAQRKDV 422
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 48/322 (14%)
Query: 21 HPSLLAAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK 78
+P+ +AP++ + S + P + S+YVG + P VT A+L E+FSS G + +
Sbjct: 23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 79 L----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SG 131
+ + + Y +V+Y + A+ LN I G+P ++ W SQR+ +G
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTG 138
Query: 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191
NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI
Sbjct: 139 QGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAI 197
Query: 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNP 251
+NG L ++++ G D +S E E
Sbjct: 198 KHVNGMLLNDKKVFV---------GHHISKKDRQSKFE------------------EMKA 230
Query: 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAAL 306
+T VY+ N+ EVT + + F G I + RD +GFGFV +STH A
Sbjct: 231 NFTNVYIKNIDQEVTDEEFRKMFEKF--GEITSATLSRDQEGKSRGFGFVNFSTHDSAQA 288
Query: 307 AIQMGNARILCGKPIKCSWGSK 328
A+ N + + G+ + K
Sbjct: 289 AVDEMNDKEIKGQKLYVGRAQK 310
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 137/338 (40%), Gaps = 78/338 (23%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +YV NL+ +V L F G
Sbjct: 320 KQYEAARLEKASKY-----------------QGVNLYVKNLTDDVDDEKLRELFSPF--G 360
Query: 281 TIEDVRVQRD-------------------------------------------------- 290
TI +V RD
Sbjct: 361 TITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKS 420
Query: 291 KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 421 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 458
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 8/193 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGISE 236
++ ++ N +S+
Sbjct: 191 AERLLAAQNPLSQ 203
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 41/200 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK-----------------NLDVGAN----- 101
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 309 QMGNARILCGKPIKCSWGSK 328
+ N + LC +PI S+ K
Sbjct: 160 EAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 305
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 306 LAIQMGNARILCGKPIKCSWGS 327
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 42/299 (14%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDR 95
P A T S+YVG + P VT A+L E+F+S GP+ ++ + + Y +V++ +
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFAC 152
A+ LN I G+P ++ W SQR+ + G NVF+ +L P + + L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
FS F +V D+ G ++G+GFV F + E A +AI +NG L ++++
Sbjct: 188 FSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV------ 240
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
G + +S VE K+N +T VY+ NL +E+T +
Sbjct: 241 ---GHHVSRRERQSKVEAL---------KAN---------FTNVYIKNLDTEITEQEFSD 279
Query: 273 HFHALC-VGTIEDVRVQRDK--GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
F + ++ V+ Q DK GFGFV Y+ H A A+ N + GK + K
Sbjct: 280 LFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 33/293 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ P + N L + FS+ G + CK+ + YGFV + SA AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + +R E +F NV++ +L E+T+ F F +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
++ DQ + RGFGFV++ N E AQ A+++LN K +++ A K +E +
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E N Q +++ NL EV L F A G
Sbjct: 348 KRYEQMKLEKMNKY-----------------QGVNLFIKNLQDEVDDERLKAEFSAF--G 388
Query: 281 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
TI ++ D KGFGFV Y+T EA A+ N R+L GKP+ + +
Sbjct: 389 TITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++++ N+ +V + L+ FS+ G + K++ ++ +GFV Y A A+ +
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 106 NGRHIFGQPIKVNWAYASSQR 126
N R + G+P+ V A R
Sbjct: 425 NQRMLAGKPLYVALAQRKEVR 445
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 8/193 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGISE 236
++ ++ N +S+
Sbjct: 191 AERLLAAQNPLSQ 203
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 41/200 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK-----------------NLDVGAN----- 101
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 309 QMGNARILCGKPIKCSWGSK 328
+ N + LC +PI S+ K
Sbjct: 160 EAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 305
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 306 LAIQMGNARILCGKPIKCSWGS 327
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 8/193 (4%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVT 104
+VYVG + +V+ LL E+F GP+ + K YGFV++ A AI
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDAR 163
+N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F +
Sbjct: 74 MNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSA 190
Query: 224 SKSVVELTNGISE 236
++ ++ N +S+
Sbjct: 191 AERLLAAQNPLSQ 203
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 41/200 (20%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
V+VG L +V++ L+ F + + D+ TG+ +G+GFV F ++EDA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
N L + IR N K S+ +K N D N
Sbjct: 75 NMIKLYGKPIRVN-----------KASAHNK-----------------NLDVGAN----- 101
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAI 308
+++GNL E+ L+ F A V ++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 309 QMGNARILCGKPIKCSWGSK 328
+ N + LC +PI S+ K
Sbjct: 160 EAMNGQYLCNRPITVSYAFK 179
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 305
Q TVYVG L +V+ L F L G + + + +D+ G+GFV + + +A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELF--LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
Query: 306 LAIQMGNARILCGKPIKCSWGS 327
AI++ N L GKPI+ + S
Sbjct: 69 YAIKIMNMIKLYGKPIRVNKAS 90
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 46/292 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 113 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 169 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 218
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
D +S E E +T VY+ N+ EVT + + F G
Sbjct: 219 KDRQSKFE------------------EMKANFTNVYIKNIDQEVTDEEFRKMFEKF--GE 258
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
I + RD +GFGFV +STH A A+ N + + G+ + K
Sbjct: 259 ITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 137/340 (40%), Gaps = 80/340 (23%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ ++ EVTD F F +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEIT 260
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F + AQ+A++++N K + +++ A K +E +
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +YV NL+ +V L F G
Sbjct: 320 KQYEAARLEKASKY-----------------QGVNLYVKNLTDDVDDEKLRELFSPF--G 360
Query: 281 TIEDVRVQRD-------------------------------------------------- 290
TI +V RD
Sbjct: 361 TITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILG 420
Query: 291 --KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 421 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 304
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 305 ALAIQMGNARILCGKPIKCSWGSK 328
A++ N ++ GKP + W +
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQR 130
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 46/292 (15%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 109 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 165 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 214
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
D +S E E +T VY+ NL E++ + + F G
Sbjct: 215 KDRQSKFE------------------EMKANFTNVYIKNLDQEISEEEFRQMFEKF--GE 254
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
I + RD +GFGFV YSTH A A+ N + + G+ + K
Sbjct: 255 ITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 28/250 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+++ F F +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEIT 256
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV++ + AQ+A++++N K + +++ A K +E +
Sbjct: 257 SATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELR 315
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +YV NL+ ++ L F G
Sbjct: 316 KQYEAARLEKASKY-----------------QGVNLYVKNLTDDIDDEKLREMFAPY--G 356
Query: 281 TIEDVRVQRD 290
TI +V RD
Sbjct: 357 TITSAKVMRD 366
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 68/231 (29%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ +++ +++F G + L + + +GFV+Y SA A+ +
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEM 289
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + + GQ + V A +RE+ N++V +L+ ++ D L
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 349
Query: 151 ACFSVFPTCSDARVMWD---QKT------------------------------------- 170
F+ + T + A+VM D ++T
Sbjct: 350 EMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDK 409
Query: 171 ----------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 410 ENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 304
P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+ +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 305 ALAIQMGNARILCGKPIKCSWGSK 328
A++ N ++ GKP + W +
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQR 126
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 43/310 (13%)
Query: 29 QIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDK 84
Q P + + P+ + S S+YVG + P V+ ALL ++FS G + ++ I
Sbjct: 20 QTAPTTTESETPKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTS 78
Query: 85 SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPE 143
Y +V++ D + AI LN I G+P ++ W+ S R+ SG N+++ +L P
Sbjct: 79 LGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPA 136
Query: 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203
+ + +L FS F +V D+ G SRGFGFV F N+ DA+ AI ++G + +++
Sbjct: 137 IDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQE 195
Query: 204 IRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSS 263
+ D +S +E E ++T VYV N+
Sbjct: 196 VYVALHVS---------KKDRQSKLE------------------EVKAKFTNVYVKNIDQ 228
Query: 264 EVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCG 318
E + + F G I +++D +GFGFV + H AA A+ N G
Sbjct: 229 ETSQEEFEELFGKY--GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKG 286
Query: 319 KPIKCSWGSK 328
+ + K
Sbjct: 287 QKLYVGRAQK 296
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VYV NI + + +E+F G + L K + +GFV++ D +AA A+ L
Sbjct: 220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N GQ + V A Y +++ E + + N+FV +L + D L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210
F+ F T + A+VM D+ TG SRGFGFV F E+A AI + N + + + + A
Sbjct: 340 EEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 211 K 211
+
Sbjct: 399 R 399
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 45/275 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105
S+YVG++ P V + L ++F+ P L C+ + Y +V++ + A+ A+ +L
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 106 NGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
N I +PI++ S R+ + SG NVF+ +L + + L+ FS F T
Sbjct: 120 NYAPIRDRPIRIML----SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D GRS+G+GFV F +E AQ+AI+ LNG L ++Q+ + ++ S
Sbjct: 176 KVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARS 230
Query: 223 DSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 282
+S +V P +T VYV NL E+T +L + F G I
Sbjct: 231 ESGAV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKY--GDI 265
Query: 283 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGN 312
V +D + FGFV + + AA+A++ N
Sbjct: 266 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 129/309 (41%), Gaps = 33/309 (10%)
Query: 33 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL---IKKDKSSYGF 89
I+ N P S +V++ N+ + N L E FSS G + CK+ + YGF
Sbjct: 131 IMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGF 190
Query: 90 VDYFDRRSAALAIVTLNG-----RHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEV 144
V + +A AI LNG + +F A S+ NV+V +L E+
Sbjct: 191 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 250
Query: 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204
TD L F + S A VM DQ +G SR FGFV+F + E A A+ +NG LG +
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSE 264
A K + +E + + + + Q + +Y+ NL
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKL-----------------QGSNLYLKNLDDS 352
Query: 265 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGK 319
V L F G + +V + +GFGFV YS EA LA++ N +++ K
Sbjct: 353 VNDEKLKEMFSEY--GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 410
Query: 320 PIKCSWGSK 328
P+ + +
Sbjct: 411 PLYVALAQR 419
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 41/192 (21%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VGDL P V ++ L F+ + RV D T RS G+ +V+F N EDA A+ L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
N + +R IR SN D
Sbjct: 120 NYAPIRDRPIRIML---------------------------------SNRDPSTRLSGKG 146
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEAALAIQ 309
V++ NL + + + L+ F + GTI +V R KG+GFV++ A AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSF--GTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAID 204
Query: 310 MGNARILCGKPI 321
N +L K +
Sbjct: 205 KLNGMLLNDKQV 216
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 158/341 (46%), Gaps = 66/341 (19%)
Query: 36 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGF 89
G+L P +D +T R ++ N+ N L SS GP K+ Y F
Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCF 110
Query: 90 VDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQRE-------DTSGHFNVFVGD 139
VD+ AA A++ NG I P +K+NWA +S + + ++FVGD
Sbjct: 111 VDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGD 169
Query: 140 LSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198
L+P VT++ LF F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +
Sbjct: 170 LAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229
Query: 199 LGNRQIRCNWAAKGATSGDEKQSS-----------------DSKSVVE----LTNGISED 237
L R I+ G TSG ++ S DS+ + + L+NG +
Sbjct: 230 LNGRAIKV-----GPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNM 284
Query: 238 GQEKSN--------EDAPENN----PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 285
G ++++ + P N P TTV++G LSS VT +L +F GTI V
Sbjct: 285 GFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYV 342
Query: 286 RVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326
++ K GFV+Y A AI + ++ SWG
Sbjct: 343 KIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWG 383
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL-IKKDKSSYGFVDYFDRRSAALAIVTLNG 107
+V++G + VT L+ F G + K+ + K GFV Y DR SA AI + G
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGK---CCGFVQYVDRLSAEAAIAGMQG 370
Query: 108 RHIFGQPIKVNWAYASSQ 125
I ++++W ++ Q
Sbjct: 371 FPIANSRVRLSWGRSAKQ 388
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 46/278 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 115 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 171 CKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 220
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
D +S E E +T VY+ NL SE+ + + F G
Sbjct: 221 KDRQSKFE------------------EMKANFTNVYIKNLDSEIDDDEFRKMFEKF--GE 260
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 314
I + RD +GFGFV +STH A A++ N +
Sbjct: 261 ITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDK 298
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 28/250 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F NV++ +L E+ D F F +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEIT 262
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + DQ+ G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K +E +
Sbjct: 263 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +YV NL+ ++ L F G
Sbjct: 322 KQYEAARLEKASKY-----------------QGVNLYVKNLTDDIDDEKLRELFGPY--G 362
Query: 281 TIEDVRVQRD 290
TI +V RD
Sbjct: 363 TITSAKVMRD 372
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ N D + A+ D
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQY 253
LN + + R W+ + + + GQ
Sbjct: 115 LNYTLIKGKPCRIMWSQRDPA-------------------LRKTGQ-------------- 141
Query: 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAI 308
V++ NL S + + LH F A G I +V +D KG+GFV Y T A AI
Sbjct: 142 GNVFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI 199
Query: 309 QMGNARILCGKPI 321
+ N +L K +
Sbjct: 200 KHVNGMLLNDKKV 212
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHP 302
N P ++YVG L VT L+ F + +G + +RV RD G+ +V Y+
Sbjct: 49 NQPHSASLYVGELDPSVTEAMLYELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTA 106
Query: 303 EAALAIQMGNARILCGKPIKCSWGSK 328
+ A++ N ++ GKP + W +
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQR 132
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 74/237 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
+VY+ N+ ++ + +++F G + L + + +GFV++ SA A+ +
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 106 NGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLF 150
N + I Q + V A +RE+ N++V +L+ ++ D L
Sbjct: 296 NDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLR 355
Query: 151 ACFSVFPTCS------DARVMWDQKT---------------------------------- 170
F + T + D V DQ
Sbjct: 356 ELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSES 415
Query: 171 ----------------GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 416 SEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 472
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 289 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 433 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 472
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 43/291 (14%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y + A+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 105 LNGRHIFGQPIKVNWAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 116 LNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E AQ+AI +NG L ++++ G
Sbjct: 172 CKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV---------GHHIAK 221
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSV---DLHRHFHALC 278
D +S E E +T VYV N+ + T DL F +
Sbjct: 222 KDRQSKFE------------------EMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 279 VGTI-EDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
T+ D + +GFGFV +++H AA A++ N + G+ + K
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 27/250 (10%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V A R E+ +F NV+V ++ + T+ F F +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D ++G+SRGFGFV+F + ++A +A+ LN K +++ A K +E +
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +Y+ NLS ++ L F + G
Sbjct: 324 KQYEAARIEKASKY-----------------QGVNLYIKNLSDDIDDEKLRELFSSY--G 364
Query: 281 TIEDVRVQRD 290
TI +V RD
Sbjct: 365 TITSAKVMRD 374
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 71/222 (31%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVT 104
+VYV NI T +++F G + L + +S +GFV++ +AA A+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATL 149
LN + GQ + V A +RE+ N+++ +LS ++ D L
Sbjct: 297 LNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 356
Query: 150 FACFSVFPTCSDARVMW---------------------------------------DQKT 170
FS + T + A+VM D K
Sbjct: 357 RELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE 416
Query: 171 -------------GRSRGFGFVSFRNQEDAQSAINDLNGKWL 199
G+S+GFGFV F + ++A A+ ++N + +
Sbjct: 417 NKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMV 458
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEA 304
P ++YVG L VT L F + +G + +RV RD G+ +V Y+ +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSS--IGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 109
Query: 305 ALAIQMGNARILCGKPIKCSWGSK 328
A++ N ++ G+P + W +
Sbjct: 110 ERALEDLNYTLIKGRPCRIMWSQR 133
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 289 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQR 470
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 7/211 (3%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
++YVG + +V+ ++L E+ GP+ + + + +GFV++ A AI
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 105 LNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-R 163
LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F +
Sbjct: 74 LNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD 223
+M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+ ++
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAA 191
Query: 224 SKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
+ + +D + D P P T
Sbjct: 192 ERMLAAQNPLFPKDRPHQVFSDVPLGVPANT 222
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 87/228 (38%), Gaps = 50/228 (21%)
Query: 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194
++VG L +V+++ L+ + D+ T +GFGFV F +EDA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 195 NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT 254
N L + I+ N A S EK N D N
Sbjct: 75 NMIKLYGKPIKVNKA-----SAHEK-----------------------NMDVGAN----- 101
Query: 255 TVYVGNLSSEVTSVDLHRHFHALCV-----GTIEDVRVQRDKGFGFVRYSTHPEAALAIQ 309
++VGNL EV L+ F A V + DV KGF F+ +++ + A++
Sbjct: 102 -IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 310 MGNARILCGKPIKCSWGSKPTPPG-----------TSSTPLPPPPAPH 346
N + LC + I S+ K G + PL P PH
Sbjct: 161 AMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPH 208
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAA 305
Q T+YVG L +V+ L + G + V + +D+ GFGFV + +A
Sbjct: 11 QDATIYVGGLDEKVSESILWELM--VQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68
Query: 306 LAIQMGNARILCGKPIKCSWGS 327
AI++ N L GKPIK + S
Sbjct: 69 YAIKILNMIKLYGKPIKVNKAS 90
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 46/276 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG++ VT++ L + F G + + L+ + YG+V++ + + AA AI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 105 LNGRHIFGQPIKVNWAY--ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162
LN ++G+PI+V +++ S +R SG N+F+ +L + L FS F
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSS 222
+V D +G+S+G+GFV + N+E AQ AI LNG L ++Q+ +
Sbjct: 154 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR----------- 201
Query: 223 DSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI 282
+ D+ N ++T VYV NL+ T DL F G I
Sbjct: 202 ------------------RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEY--GKI 241
Query: 283 EDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNA 313
V +D KGFGFV + +AA A++ N
Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 139/301 (46%), Gaps = 33/301 (10%)
Query: 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDR 95
P S ++++ N+ + + L + FSS G + CK + D S YGFV Y +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK-VAVDSSGQSKGYGFVQYANE 174
Query: 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF---NVFVGDLSPEVTDATLFAC 152
SA AI LNG + + + V +R+ T+ NV+V +L+ TD L
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212
F + + A VM D + G+S+GFGFV+F N +DA A+ LNG +++ W
Sbjct: 235 FGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVGR 289
Query: 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272
A E+++ EL ++ +E +++ Q + +YV NL ++ L
Sbjct: 290 AQKKSERET-------ELRVRYEQNLKEAADKF------QSSNLYVKNLDPSISDEKLKE 336
Query: 273 HFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327
F GT+ +V RD KG GFV ++T EA A+ + +++ KP+ +
Sbjct: 337 IFSPF--GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 328 K 328
+
Sbjct: 395 R 395
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALA 307
T++YVG+L VT L F + GT+ VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQM--GTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 308 IQMGNARILCGKPIKCSW 325
IQ N L GKPI+ +
Sbjct: 94 IQELNYIPLYGKPIRVMY 111
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY---GFVDYF 93
NL D ++YV N+ P +++ L+E+FS G + K+++ + GFV +
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 94 DRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126
A A+ L+G+ I +P+ V A R
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 46/278 (16%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVT 104
S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y D A+
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 105 LNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161
LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F
Sbjct: 103 LNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221
+V D+ G S+G+GFV + E A +AI +NG L ++++ G
Sbjct: 159 CKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISK 208
Query: 222 SDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281
D +S E E +T +Y+ N+ EV + + F G
Sbjct: 209 KDRQSKFE------------------EMKANFTNIYIKNIDPEVEDEEFRKLFEKF--GE 248
Query: 282 IEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 314
I + RD +GFGFV +STH A A++ N +
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDK 286
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 28/250 (11%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTL 105
+V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 106 NGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCS 160
NG + + + V + R E+ +F N+++ ++ PEV D F F +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ 220
A + D + G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K +E +
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 221 SSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280
+ +E + Q +YV NL+ +V L F G
Sbjct: 310 KQYEAARMEKASKY-----------------QGVNLYVKNLTDDVDDDKLRELFGPY--G 350
Query: 281 TIEDVRVQRD 290
TI +V RD
Sbjct: 351 TITSAKVMRD 360
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ + + A+++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQY 253
LN + + R W+ + + + GQ
Sbjct: 103 LNYTLIKGKPCRIMWSQRDPA-------------------LRKTGQ-------------- 129
Query: 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAI 308
V++ NL S + + LH F A G I +V +D KG+GFV Y T A AI
Sbjct: 130 GNVFIKNLDSAIDNKALHDTFAAF--GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAI 187
Query: 309 QMGNARILCGKPI 321
+ N +L K +
Sbjct: 188 KHVNGMLLNDKKV 200
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 68/231 (29%)
Query: 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTL 105
++Y+ NI P+V + +++F G + L + + +GFV++ SA A+ +
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 106 NGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLF 150
N + + Q + V A Y +++ E S + N++V +L+ +V D L
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 151 ACFSVFPTCSDARVMWD------------------------------------------- 167
F + T + A+VM D
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 168 -------QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211
+ G+S+GFGFV F + ++A A+ ++N + + + + A +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 454
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 220 QSSDSKSVVELTNGISEDGQ--EKSNEDAP--ENNPQYTTVYVGNLSSEVTSVDLHRHFH 275
++S + + E TNG ++ E + +AP + P ++YVG L VT L+ F
Sbjct: 4 ETSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFS 63
Query: 276 ALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
+ +G + +RV RD G+ +V Y+ A+ N ++ GKP + W +
Sbjct: 64 S--IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQR 120
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 289 RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328
+ KGFGFV +S+ EA+ A+ N R++ GKP+ + +
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 454
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,372,348
Number of Sequences: 539616
Number of extensions: 6662026
Number of successful extensions: 38881
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 34547
Number of HSP's gapped (non-prelim): 3309
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)