Query 015069
Match_columns 413
No_of_seqs 291 out of 2629
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.4E-47 5.2E-52 361.8 34.0 280 46-330 2-350 (352)
2 KOG0148 Apoptosis-promoting RN 100.0 2.6E-44 5.7E-49 301.5 21.6 237 44-332 3-241 (321)
3 KOG0145 RNA-binding protein EL 100.0 1.1E-42 2.3E-47 290.1 26.4 304 21-329 14-358 (360)
4 KOG0117 Heterogeneous nuclear 100.0 1.9E-42 4.2E-47 309.4 25.3 242 46-330 82-332 (506)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-41 4E-46 331.2 33.5 277 46-330 1-352 (481)
6 TIGR01628 PABP-1234 polyadenyl 100.0 4.8E-42 1E-46 343.9 28.6 266 44-329 85-364 (562)
7 TIGR01628 PABP-1234 polyadenyl 100.0 7E-42 1.5E-46 342.7 29.5 248 49-330 2-262 (562)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.7E-41 3.7E-46 328.2 30.4 245 46-331 57-309 (578)
9 TIGR01645 half-pint poly-U bin 100.0 4.7E-40 1E-44 318.4 33.9 167 46-212 106-284 (612)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.7E-40 1.4E-44 320.2 33.7 275 47-329 96-480 (481)
11 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-39 7E-44 316.5 33.2 282 43-327 85-446 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.9E-39 6.2E-44 321.2 32.7 274 42-327 170-500 (509)
13 KOG0127 Nucleolar protein fibr 100.0 6.9E-38 1.5E-42 286.4 26.4 279 48-329 6-378 (678)
14 KOG0144 RNA-binding protein CU 100.0 7.6E-38 1.7E-42 278.7 19.9 285 43-332 30-507 (510)
15 TIGR01645 half-pint poly-U bin 100.0 3.3E-33 7E-38 270.9 24.1 174 131-330 106-285 (612)
16 TIGR01659 sex-lethal sex-letha 100.0 2E-32 4.2E-37 253.1 23.1 169 43-214 103-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 1.9E-32 4.2E-37 254.2 22.1 238 48-328 2-245 (369)
18 TIGR01659 sex-lethal sex-letha 100.0 4.2E-32 9.1E-37 250.9 21.3 168 127-331 102-277 (346)
19 KOG0123 Polyadenylate-binding 100.0 1.2E-31 2.6E-36 249.0 18.8 260 48-328 77-348 (369)
20 KOG0124 Polypyrimidine tract-b 100.0 2.8E-30 6.1E-35 225.7 18.9 164 48-211 114-289 (544)
21 KOG0110 RNA-binding protein (R 100.0 2E-30 4.2E-35 245.4 19.3 257 43-329 381-693 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.7E-29 1.2E-33 236.0 21.0 163 131-330 2-172 (352)
23 KOG0147 Transcriptional coacti 100.0 1.3E-29 2.8E-34 233.7 15.0 283 42-327 174-526 (549)
24 KOG0144 RNA-binding protein CU 100.0 1.3E-29 2.9E-34 226.2 13.2 166 129-330 31-207 (510)
25 KOG0127 Nucleolar protein fibr 100.0 6E-29 1.3E-33 228.0 17.0 265 47-311 117-516 (678)
26 KOG4212 RNA-binding protein hn 100.0 3E-27 6.6E-32 211.2 25.7 162 46-208 43-290 (608)
27 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-27 2.8E-32 234.4 24.2 175 129-329 86-266 (457)
28 KOG0148 Apoptosis-promoting RN 100.0 1.1E-27 2.3E-32 201.8 17.6 163 44-212 59-238 (321)
29 TIGR01648 hnRNP-R-Q heterogene 100.0 2.9E-27 6.3E-32 229.4 21.2 223 45-284 136-370 (578)
30 KOG0145 RNA-binding protein EL 100.0 1.7E-27 3.7E-32 199.2 14.4 166 130-332 39-212 (360)
31 KOG0124 Polypyrimidine tract-b 99.9 1.3E-27 2.9E-32 209.0 11.7 205 133-368 114-324 (544)
32 KOG0131 Splicing factor 3b, su 99.9 1.4E-26 3.1E-31 184.0 12.8 170 45-216 7-181 (203)
33 KOG0131 Splicing factor 3b, su 99.9 2.1E-26 4.6E-31 183.0 12.1 169 128-332 5-180 (203)
34 KOG0117 Heterogeneous nuclear 99.9 6.4E-25 1.4E-29 197.3 20.0 200 89-335 38-254 (506)
35 KOG1190 Polypyrimidine tract-b 99.9 7.8E-25 1.7E-29 194.5 18.6 281 42-330 23-374 (492)
36 KOG1190 Polypyrimidine tract-b 99.9 2.8E-23 6E-28 184.7 23.4 277 45-328 148-490 (492)
37 KOG0109 RNA-binding protein LA 99.9 6.9E-25 1.5E-29 186.7 11.4 150 133-331 3-152 (346)
38 KOG4211 Splicing factor hnRNP- 99.9 2.8E-23 6.1E-28 189.5 22.6 276 44-327 7-356 (510)
39 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-23 2.8E-28 209.0 22.2 187 128-329 171-375 (509)
40 KOG0109 RNA-binding protein LA 99.9 1.1E-24 2.5E-29 185.4 10.6 148 49-213 4-151 (346)
41 KOG0146 RNA-binding protein ET 99.9 2.7E-23 5.8E-28 174.9 9.4 214 112-331 2-367 (371)
42 KOG1456 Heterogeneous nuclear 99.9 1.1E-20 2.3E-25 166.4 25.0 280 43-331 27-365 (494)
43 KOG0110 RNA-binding protein (R 99.9 3.7E-22 8E-27 189.6 12.2 165 49-213 517-694 (725)
44 KOG0146 RNA-binding protein ET 99.9 6.8E-22 1.5E-26 166.4 12.2 177 38-214 10-367 (371)
45 KOG0147 Transcriptional coacti 99.9 6.3E-22 1.4E-26 183.1 9.6 179 131-333 178-362 (549)
46 KOG0120 Splicing factor U2AF, 99.9 3.6E-21 7.8E-26 180.7 14.5 268 43-326 171-489 (500)
47 KOG4205 RNA-binding protein mu 99.9 2.2E-21 4.8E-26 173.9 10.5 170 46-217 5-181 (311)
48 KOG1456 Heterogeneous nuclear 99.8 1.5E-18 3.2E-23 153.0 26.6 271 51-328 126-490 (494)
49 KOG0105 Alternative splicing f 99.8 2.9E-20 6.3E-25 148.2 12.9 150 44-200 3-176 (241)
50 KOG0105 Alternative splicing f 99.8 7.9E-19 1.7E-23 140.1 19.2 174 130-318 4-177 (241)
51 KOG4205 RNA-binding protein mu 99.8 1.5E-20 3.2E-25 168.6 10.6 168 131-331 5-178 (311)
52 KOG4206 Spliceosomal protein s 99.8 3.2E-19 6.9E-24 148.3 17.3 192 131-327 8-220 (221)
53 KOG1365 RNA-binding protein Fu 99.8 1.2E-19 2.6E-24 160.3 10.8 276 44-327 57-360 (508)
54 KOG4212 RNA-binding protein hn 99.8 7.6E-18 1.7E-22 151.4 18.6 196 131-329 43-294 (608)
55 KOG4206 Spliceosomal protein s 99.8 3.9E-18 8.4E-23 141.9 15.5 160 45-209 7-219 (221)
56 KOG1457 RNA binding protein (c 99.8 3.8E-17 8.1E-22 134.5 15.1 225 42-316 29-273 (284)
57 KOG4211 Splicing factor hnRNP- 99.8 2.4E-17 5.3E-22 151.0 15.2 167 130-327 8-180 (510)
58 PLN03134 glycine-rich RNA-bind 99.7 4.2E-17 9.1E-22 132.3 12.1 85 129-213 31-115 (144)
59 PLN03134 glycine-rich RNA-bind 99.7 3.3E-16 7.1E-21 127.0 14.2 79 251-331 32-116 (144)
60 KOG1548 Transcription elongati 99.7 6.4E-16 1.4E-20 135.5 15.8 194 132-328 134-351 (382)
61 KOG0106 Alternative splicing f 99.7 2.9E-17 6.3E-22 138.3 7.1 150 48-209 2-168 (216)
62 KOG0106 Alternative splicing f 99.7 8.9E-17 1.9E-21 135.4 8.3 165 134-326 3-168 (216)
63 KOG1548 Transcription elongati 99.6 1.9E-14 4.1E-19 126.4 16.8 165 44-212 131-352 (382)
64 KOG0122 Translation initiation 99.6 2.5E-15 5.4E-20 125.8 9.7 84 129-212 186-269 (270)
65 PF00076 RRM_1: RNA recognitio 99.6 1.5E-14 3.1E-19 103.1 9.1 70 135-205 1-70 (70)
66 KOG0107 Alternative splicing f 99.6 1.1E-14 2.3E-19 115.9 8.7 78 46-124 9-86 (195)
67 KOG0125 Ataxin 2-binding prote 99.6 1.2E-14 2.5E-19 126.8 8.9 79 45-123 94-174 (376)
68 PLN03120 nucleic acid binding 99.6 3.6E-14 7.9E-19 122.9 11.9 76 253-331 4-82 (260)
69 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4.2E-19 102.4 8.5 65 256-322 1-70 (70)
70 KOG0125 Ataxin 2-binding prote 99.6 3.1E-14 6.7E-19 124.1 11.1 80 249-330 92-175 (376)
71 KOG0114 Predicted RNA-binding 99.5 4.9E-14 1.1E-18 101.9 9.3 86 38-123 9-95 (124)
72 PLN03120 nucleic acid binding 99.5 4.5E-14 9.7E-19 122.4 10.6 76 47-123 4-80 (260)
73 KOG0149 Predicted RNA-binding 99.5 1.2E-14 2.7E-19 121.3 6.8 79 133-212 13-91 (247)
74 PLN03213 repressor of silencin 99.5 1.9E-14 4.1E-19 131.7 8.4 78 46-123 9-88 (759)
75 PF14259 RRM_6: RNA recognitio 99.5 8.1E-14 1.8E-18 99.1 9.2 70 135-205 1-70 (70)
76 KOG0108 mRNA cleavage and poly 99.5 1.4E-14 3E-19 136.1 6.4 83 133-215 19-101 (435)
77 KOG0113 U1 small nuclear ribon 99.5 7.7E-14 1.7E-18 120.2 9.7 94 119-212 88-181 (335)
78 KOG0114 Predicted RNA-binding 99.5 1.3E-13 2.9E-18 99.7 8.6 72 254-327 19-93 (124)
79 KOG0126 Predicted RNA-binding 99.5 7.4E-15 1.6E-19 117.3 2.3 86 130-215 33-118 (219)
80 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.5E-18 97.6 8.6 65 256-322 1-70 (70)
81 COG0724 RNA-binding proteins ( 99.5 4.5E-13 9.9E-18 123.0 14.0 145 132-290 115-260 (306)
82 KOG0107 Alternative splicing f 99.5 9.2E-14 2E-18 110.6 7.5 77 253-331 10-87 (195)
83 KOG0122 Translation initiation 99.5 2.9E-13 6.2E-18 113.6 10.5 76 252-329 188-269 (270)
84 KOG1365 RNA-binding protein Fu 99.5 1.3E-13 2.8E-18 122.5 8.1 162 47-210 161-360 (508)
85 KOG0121 Nuclear cap-binding pr 99.5 1.2E-13 2.7E-18 103.9 6.7 74 252-327 35-114 (153)
86 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 3E-18 103.6 6.7 81 131-211 35-115 (153)
87 KOG4207 Predicted splicing fac 99.4 1.7E-13 3.7E-18 111.8 6.2 88 127-214 8-95 (256)
88 COG0724 RNA-binding proteins ( 99.4 1.3E-12 2.9E-17 119.9 12.9 145 47-191 115-284 (306)
89 KOG4207 Predicted splicing fac 99.4 2.9E-13 6.4E-18 110.5 7.1 80 248-329 8-93 (256)
90 KOG0120 Splicing factor U2AF, 99.4 2.5E-12 5.4E-17 121.6 13.7 166 45-210 287-490 (500)
91 KOG4660 Protein Mei2, essentia 99.4 6.1E-12 1.3E-16 117.8 15.8 160 43-211 71-249 (549)
92 PLN03121 nucleic acid binding 99.4 1.3E-12 2.8E-17 111.4 10.2 76 46-122 4-80 (243)
93 KOG0130 RNA-binding protein RB 99.4 5.2E-13 1.1E-17 101.4 6.7 86 129-214 69-154 (170)
94 KOG4307 RNA binding protein RB 99.4 4.9E-12 1.1E-16 120.5 14.6 162 45-209 309-511 (944)
95 PLN03213 repressor of silencin 99.4 1.3E-12 2.7E-17 119.9 9.7 75 252-328 9-87 (759)
96 KOG0111 Cyclophilin-type pepti 99.4 3E-13 6.6E-18 111.3 5.0 88 130-217 8-95 (298)
97 PLN03121 nucleic acid binding 99.4 2.7E-12 6E-17 109.4 10.8 74 253-329 5-81 (243)
98 PF13893 RRM_5: RNA recognitio 99.4 2.5E-12 5.4E-17 86.9 8.5 55 270-326 1-56 (56)
99 smart00362 RRM_2 RNA recogniti 99.4 2.6E-12 5.5E-17 91.5 9.0 68 255-324 1-72 (72)
100 smart00362 RRM_2 RNA recogniti 99.4 2E-12 4.3E-17 92.1 8.3 70 49-118 1-72 (72)
101 KOG0128 RNA-binding protein SA 99.4 6.1E-14 1.3E-18 136.7 0.1 228 46-328 570-814 (881)
102 KOG4307 RNA binding protein RB 99.4 2.1E-11 4.6E-16 116.3 15.8 187 135-326 314-511 (944)
103 KOG0111 Cyclophilin-type pepti 99.3 8.6E-13 1.9E-17 108.7 5.0 86 253-340 10-101 (298)
104 KOG0113 U1 small nuclear ribon 99.3 8.1E-12 1.7E-16 107.9 10.4 82 247-330 95-182 (335)
105 smart00360 RRM RNA recognition 99.3 6E-12 1.3E-16 89.2 8.2 70 137-206 1-70 (71)
106 PF13893 RRM_5: RNA recognitio 99.3 6.7E-12 1.5E-16 84.7 7.1 56 64-120 1-56 (56)
107 KOG0149 Predicted RNA-binding 99.3 5.8E-12 1.3E-16 105.5 8.1 74 252-328 11-90 (247)
108 KOG0130 RNA-binding protein RB 99.3 6.8E-12 1.5E-16 95.4 7.5 78 253-332 72-155 (170)
109 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.2E-16 88.0 8.9 71 49-119 1-74 (74)
110 smart00360 RRM RNA recognition 99.3 1.2E-11 2.6E-16 87.6 7.6 67 52-118 1-71 (71)
111 cd00590 RRM RRM (RNA recogniti 99.3 3.2E-11 6.8E-16 86.3 9.3 69 255-325 1-74 (74)
112 smart00361 RRM_1 RNA recogniti 99.2 3.6E-11 7.7E-16 85.1 8.2 61 146-206 2-69 (70)
113 KOG0129 Predicted RNA-binding 99.2 1.7E-10 3.6E-15 107.4 14.7 148 44-192 256-431 (520)
114 KOG0129 Predicted RNA-binding 99.2 4.8E-10 1E-14 104.4 16.1 166 128-310 255-432 (520)
115 KOG0108 mRNA cleavage and poly 99.2 5.3E-11 1.1E-15 112.2 8.6 75 254-330 19-99 (435)
116 KOG0128 RNA-binding protein SA 99.2 1.2E-11 2.5E-16 121.0 4.0 146 45-211 665-814 (881)
117 KOG0126 Predicted RNA-binding 99.2 3.9E-12 8.4E-17 101.9 0.2 75 254-330 36-116 (219)
118 KOG0132 RNA polymerase II C-te 99.1 7.9E-11 1.7E-15 114.0 7.7 105 48-154 422-528 (894)
119 KOG4454 RNA binding protein (R 99.1 1E-11 2.2E-16 102.5 1.4 145 45-202 7-153 (267)
120 KOG0153 Predicted RNA-binding 99.1 3.9E-10 8.5E-15 99.7 9.0 79 248-328 223-302 (377)
121 KOG0132 RNA polymerase II C-te 99.1 2.3E-10 5E-15 110.8 8.1 79 253-333 421-499 (894)
122 KOG0226 RNA-binding proteins [ 99.1 1.4E-10 3E-15 98.1 5.1 160 50-209 99-267 (290)
123 smart00361 RRM_1 RNA recogniti 99.1 5.3E-10 1.1E-14 79.1 7.2 56 267-324 2-70 (70)
124 KOG0153 Predicted RNA-binding 99.0 7.6E-10 1.7E-14 97.9 8.5 80 42-123 223-303 (377)
125 KOG0415 Predicted peptidyl pro 99.0 3.8E-10 8.3E-15 99.7 6.5 84 129-212 236-319 (479)
126 KOG4208 Nucleolar RNA-binding 99.0 1.4E-09 3E-14 89.6 8.6 85 128-212 45-130 (214)
127 KOG0112 Large RNA-binding prot 99.0 5.1E-10 1.1E-14 110.2 4.8 161 43-214 368-533 (975)
128 KOG0112 Large RNA-binding prot 99.0 6.6E-10 1.4E-14 109.5 5.3 163 130-332 370-534 (975)
129 KOG1457 RNA binding protein (c 98.9 1.2E-08 2.5E-13 84.9 9.8 81 253-335 34-124 (284)
130 KOG4210 Nuclear localization s 98.9 1.8E-09 3.8E-14 97.4 5.5 168 45-213 86-265 (285)
131 KOG4454 RNA binding protein (R 98.9 7.8E-10 1.7E-14 91.5 1.5 141 130-322 7-156 (267)
132 KOG4661 Hsp27-ERE-TATA-binding 98.9 1.6E-08 3.5E-13 94.9 10.2 78 251-330 403-486 (940)
133 KOG0415 Predicted peptidyl pro 98.8 5.9E-09 1.3E-13 92.3 6.7 80 247-328 233-318 (479)
134 KOG4210 Nuclear localization s 98.8 5.2E-09 1.1E-13 94.4 5.8 173 131-330 87-265 (285)
135 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.1E-13 83.7 7.6 76 253-329 49-130 (214)
136 KOG4661 Hsp27-ERE-TATA-binding 98.8 1E-08 2.2E-13 96.2 7.2 79 132-210 405-483 (940)
137 KOG0226 RNA-binding proteins [ 98.7 1.3E-08 2.8E-13 86.4 5.5 162 133-326 97-267 (290)
138 PF04059 RRM_2: RNA recognitio 98.7 9.6E-08 2.1E-12 70.8 8.4 75 254-328 2-86 (97)
139 PF11608 Limkain-b1: Limkain b 98.7 1.2E-07 2.5E-12 66.6 8.1 70 254-328 3-76 (90)
140 KOG0533 RRM motif-containing p 98.7 6.6E-08 1.4E-12 84.0 8.4 87 128-215 79-165 (243)
141 KOG4660 Protein Mei2, essentia 98.7 2.3E-08 5E-13 94.2 5.7 180 124-328 67-249 (549)
142 KOG0533 RRM motif-containing p 98.6 1.5E-07 3.3E-12 81.8 8.4 79 251-331 81-164 (243)
143 KOG0151 Predicted splicing reg 98.6 2.6E-07 5.6E-12 89.3 10.1 82 247-330 168-258 (877)
144 PF04059 RRM_2: RNA recognitio 98.6 4E-07 8.7E-12 67.5 8.5 78 133-210 2-85 (97)
145 KOG0151 Predicted splicing reg 98.5 2.3E-07 5E-12 89.6 8.3 77 45-121 172-255 (877)
146 KOG0116 RasGAP SH3 binding pro 98.5 1.4E-07 3.1E-12 88.7 6.6 77 45-122 286-366 (419)
147 PF11608 Limkain-b1: Limkain b 98.5 4.4E-07 9.5E-12 63.8 7.0 72 48-125 3-79 (90)
148 KOG2193 IGF-II mRNA-binding pr 98.4 2.7E-08 5.8E-13 90.2 -2.2 149 133-326 2-154 (584)
149 KOG2193 IGF-II mRNA-binding pr 98.4 4.5E-08 9.7E-13 88.8 -0.8 150 49-210 3-155 (584)
150 KOG0116 RasGAP SH3 binding pro 98.4 2.9E-06 6.4E-11 80.0 10.6 79 133-212 289-367 (419)
151 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.6E-11 76.5 6.6 83 129-212 98-180 (231)
152 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.5E-11 76.6 6.2 74 253-329 101-180 (231)
153 KOG4676 Splicing factor, argin 98.3 9.8E-07 2.1E-11 79.6 5.3 182 133-318 8-215 (479)
154 PF08777 RRM_3: RNA binding mo 98.2 3.8E-06 8.3E-11 64.0 6.6 69 254-324 2-75 (105)
155 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4.2E-10 60.1 5.7 59 48-108 2-60 (105)
156 KOG0115 RNA-binding protein p5 97.9 3.5E-05 7.7E-10 66.1 6.3 100 97-207 6-109 (275)
157 KOG4676 Splicing factor, argin 97.8 1.5E-05 3.3E-10 72.1 3.6 148 47-200 7-214 (479)
158 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.5E-05 1.8E-09 48.8 4.7 53 47-102 1-53 (53)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.5E-09 48.1 5.4 52 254-308 2-53 (53)
160 COG5175 MOT2 Transcriptional r 97.7 6.9E-05 1.5E-09 66.6 5.5 105 48-152 115-240 (480)
161 COG5175 MOT2 Transcriptional r 97.7 0.0001 2.2E-09 65.5 6.4 74 254-329 115-203 (480)
162 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00027 5.8E-09 53.0 7.4 70 254-327 7-90 (100)
163 KOG1995 Conserved Zn-finger pr 97.6 4.9E-05 1.1E-09 68.5 3.5 85 130-214 64-156 (351)
164 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00028 6.1E-09 52.8 7.0 74 46-121 5-90 (100)
165 KOG1855 Predicted RNA-binding 97.4 0.0002 4.3E-09 65.9 5.2 64 249-314 227-309 (484)
166 KOG1995 Conserved Zn-finger pr 97.4 0.00024 5.1E-09 64.2 5.5 86 39-124 58-155 (351)
167 KOG3152 TBP-binding protein, a 97.3 0.00013 2.8E-09 62.7 2.6 67 48-114 75-157 (278)
168 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.5E-09 63.1 2.1 58 268-327 83-146 (260)
169 KOG2416 Acinus (induces apopto 97.3 0.00023 5E-09 68.1 4.1 83 245-328 436-521 (718)
170 KOG1855 Predicted RNA-binding 97.3 0.0013 2.8E-08 60.7 8.6 81 127-207 226-319 (484)
171 KOG0115 RNA-binding protein p5 97.2 0.00092 2E-08 57.6 6.3 96 185-324 5-109 (275)
172 KOG2202 U2 snRNP splicing fact 97.2 0.00025 5.5E-09 61.1 2.8 60 62-121 83-146 (260)
173 PF08675 RNA_bind: RNA binding 97.1 0.0018 4E-08 45.8 5.7 54 50-107 11-64 (87)
174 KOG1996 mRNA splicing factor [ 97.0 0.0015 3.4E-08 57.2 6.3 72 254-327 282-365 (378)
175 PF08952 DUF1866: Domain of un 97.0 0.0047 1E-07 49.2 8.3 77 247-328 21-106 (146)
176 PF10309 DUF2414: Protein of u 97.0 0.0048 1E-07 41.5 6.7 53 48-105 6-62 (62)
177 KOG1996 mRNA splicing factor [ 97.0 0.0022 4.7E-08 56.3 6.4 61 61-121 300-365 (378)
178 KOG2314 Translation initiation 96.9 0.0021 4.6E-08 61.4 6.3 77 130-207 56-139 (698)
179 KOG4849 mRNA cleavage factor I 96.9 0.00097 2.1E-08 59.7 3.5 76 132-207 80-157 (498)
180 KOG3152 TBP-binding protein, a 96.8 0.001 2.2E-08 57.3 3.3 73 131-203 73-157 (278)
181 KOG2135 Proteins containing th 96.8 0.0021 4.5E-08 60.2 5.4 76 253-331 372-448 (526)
182 PF08952 DUF1866: Domain of un 96.7 0.009 1.9E-07 47.6 7.5 74 46-124 26-108 (146)
183 KOG2591 c-Mpl binding protein, 96.6 0.0052 1.1E-07 58.7 6.7 68 254-324 176-247 (684)
184 KOG4849 mRNA cleavage factor I 96.6 0.004 8.6E-08 56.0 5.3 73 48-120 81-159 (498)
185 KOG2314 Translation initiation 96.6 0.0052 1.1E-07 58.8 6.3 70 254-325 59-140 (698)
186 KOG2416 Acinus (induces apopto 96.5 0.0038 8.3E-08 60.1 4.9 82 39-122 436-521 (718)
187 PF10309 DUF2414: Protein of u 96.3 0.031 6.7E-07 37.6 7.0 56 254-311 6-62 (62)
188 PF15023 DUF4523: Protein of u 96.1 0.032 6.8E-07 43.9 7.3 75 248-326 81-159 (166)
189 PF04847 Calcipressin: Calcipr 96.0 0.021 4.5E-07 48.2 6.5 62 266-329 8-71 (184)
190 PF07576 BRAP2: BRCA1-associat 95.9 0.093 2E-06 40.2 9.1 64 254-318 14-81 (110)
191 PF15023 DUF4523: Protein of u 95.9 0.051 1.1E-06 42.8 7.5 75 42-120 81-159 (166)
192 PF10567 Nab6_mRNP_bdg: RNA-re 95.7 0.38 8.2E-06 42.9 13.1 158 38-196 6-213 (309)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.021 4.5E-07 48.0 4.0 71 254-326 8-95 (176)
194 PF07576 BRAP2: BRCA1-associat 95.3 0.16 3.4E-06 39.0 8.3 66 47-112 13-81 (110)
195 KOG2253 U1 snRNP complex, subu 95.1 0.014 3E-07 57.3 2.5 76 39-119 32-107 (668)
196 KOG0804 Cytoplasmic Zn-finger 95.0 0.078 1.7E-06 49.8 7.0 68 45-112 72-142 (493)
197 PF08675 RNA_bind: RNA binding 94.9 0.16 3.4E-06 36.2 6.7 55 255-313 10-64 (87)
198 KOG2068 MOT2 transcription fac 94.8 0.013 2.8E-07 52.9 1.5 81 133-213 78-164 (327)
199 PF07292 NID: Nmi/IFP 35 domai 94.8 0.048 1E-06 39.7 4.1 75 177-277 1-76 (88)
200 KOG2135 Proteins containing th 94.6 0.028 6E-07 53.0 3.1 77 45-124 370-447 (526)
201 PF07292 NID: Nmi/IFP 35 domai 94.6 0.052 1.1E-06 39.5 3.8 67 88-154 1-74 (88)
202 KOG2068 MOT2 transcription fac 94.6 0.015 3.3E-07 52.5 1.3 76 48-123 78-163 (327)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.075 1.6E-06 44.7 5.2 81 131-211 6-97 (176)
204 KOG2591 c-Mpl binding protein, 94.3 0.12 2.6E-06 49.8 6.6 95 96-206 148-246 (684)
205 KOG4285 Mitotic phosphoprotein 94.0 0.11 2.3E-06 46.2 5.2 73 254-330 198-271 (350)
206 KOG4574 RNA-binding protein (c 93.8 0.043 9.3E-07 55.4 2.7 75 254-330 299-375 (1007)
207 KOG4285 Mitotic phosphoprotein 93.8 0.23 5E-06 44.2 6.8 71 49-123 199-270 (350)
208 PF10567 Nab6_mRNP_bdg: RNA-re 93.4 4.6 0.0001 36.2 14.1 176 128-313 11-213 (309)
209 PF04847 Calcipressin: Calcipr 93.2 0.27 5.8E-06 41.5 6.1 62 145-212 8-71 (184)
210 PF11767 SET_assoc: Histone ly 93.1 0.48 1E-05 32.5 6.2 55 264-323 11-65 (66)
211 KOG0804 Cytoplasmic Zn-finger 92.9 0.33 7.1E-06 45.8 6.7 65 253-318 74-142 (493)
212 PF03880 DbpA: DbpA RNA bindin 92.3 0.66 1.4E-05 32.7 6.3 61 263-326 11-74 (74)
213 KOG4574 RNA-binding protein (c 92.2 0.11 2.3E-06 52.6 2.9 71 50-122 301-373 (1007)
214 KOG2253 U1 snRNP complex, subu 91.7 0.14 3.1E-06 50.4 3.0 78 244-326 31-108 (668)
215 KOG4019 Calcineurin-mediated s 90.8 0.39 8.4E-06 39.6 4.2 76 254-331 11-92 (193)
216 PF14111 DUF4283: Domain of un 89.8 0.4 8.7E-06 39.2 3.7 106 58-165 28-138 (153)
217 PF03880 DbpA: DbpA RNA bindin 89.6 0.64 1.4E-05 32.8 4.1 58 58-120 12-74 (74)
218 KOG2318 Uncharacterized conser 89.5 1.8 4E-05 42.3 8.2 78 248-325 169-304 (650)
219 KOG2318 Uncharacterized conser 87.8 2.2 4.7E-05 41.8 7.5 78 44-121 171-306 (650)
220 PF11767 SET_assoc: Histone ly 87.3 3.2 6.9E-05 28.5 6.1 55 58-117 11-65 (66)
221 KOG4483 Uncharacterized conser 85.3 3.2 6.9E-05 38.7 6.9 55 46-103 390-445 (528)
222 KOG4410 5-formyltetrahydrofola 82.9 4 8.8E-05 36.2 6.2 51 45-96 328-378 (396)
223 KOG4410 5-formyltetrahydrofola 82.5 5.6 0.00012 35.3 6.9 51 251-302 328-378 (396)
224 KOG3648 Golgi apparatus protei 79.8 2 4.4E-05 42.5 3.7 16 5-20 71-86 (1179)
225 KOG2891 Surface glycoprotein [ 79.2 1.4 3.1E-05 38.8 2.2 75 254-330 150-269 (445)
226 COG5638 Uncharacterized conser 72.7 28 0.0006 32.8 8.7 39 44-82 143-186 (622)
227 KOG3648 Golgi apparatus protei 72.2 1.9 4.2E-05 42.6 1.4 18 2-19 73-90 (1179)
228 PF14111 DUF4283: Domain of un 70.7 3 6.6E-05 34.0 2.1 85 174-290 55-140 (153)
229 COG5624 TAF61 Transcription in 69.5 4.8 0.0001 37.6 3.2 34 10-43 235-268 (505)
230 PF03468 XS: XS domain; Inter 68.2 6.9 0.00015 30.3 3.4 57 49-107 10-78 (116)
231 KOG4369 RTK signaling protein 64.9 6.7 0.00014 42.0 3.5 6 87-92 1929-1934(2131)
232 PF03468 XS: XS domain; Inter 64.3 11 0.00023 29.3 3.7 55 255-309 10-75 (116)
233 PF14893 PNMA: PNMA 64.3 4.6 0.0001 37.6 2.1 51 45-95 16-72 (331)
234 KOG1295 Nonsense-mediated deca 59.0 11 0.00023 35.3 3.4 65 47-111 7-78 (376)
235 KOG4483 Uncharacterized conser 58.2 22 0.00048 33.4 5.2 57 252-310 390-446 (528)
236 COG5638 Uncharacterized conser 57.4 40 0.00088 31.8 6.8 80 247-326 140-295 (622)
237 PRK14548 50S ribosomal protein 55.8 40 0.00086 24.4 5.2 56 50-105 23-81 (84)
238 PF07530 PRE_C2HC: Associated 55.6 23 0.00049 24.5 3.8 63 147-212 2-65 (68)
239 KOG1295 Nonsense-mediated deca 53.9 17 0.00036 34.1 3.8 62 254-316 8-77 (376)
240 KOG4019 Calcineurin-mediated s 50.1 19 0.00041 30.0 3.1 74 47-122 10-89 (193)
241 PF06752 E_Pc_C: Enhancer of P 49.9 8.7 0.00019 33.1 1.2 6 2-7 8-13 (230)
242 TIGR03636 L23_arch archaeal ri 49.5 61 0.0013 23.0 5.3 55 50-104 16-73 (77)
243 smart00596 PRE_C2HC PRE_C2HC d 48.1 28 0.00062 24.0 3.2 63 147-212 2-65 (69)
244 PF02166 Androgen_recep: Andro 48.1 6 0.00013 36.1 0.0 6 399-404 407-412 (423)
245 KOG1883 Cofactor required for 46.9 11 0.00024 40.3 1.7 11 30-40 1461-1471(1517)
246 PF15513 DUF4651: Domain of un 46.7 38 0.00083 22.8 3.6 18 147-164 9-26 (62)
247 PF08734 GYD: GYD domain; Int 45.6 93 0.002 22.8 6.0 45 267-312 22-68 (91)
248 PRK14548 50S ribosomal protein 45.3 72 0.0016 23.1 5.2 56 256-311 23-81 (84)
249 TIGR02542 B_forsyth_147 Bacter 44.4 30 0.00065 26.4 3.2 111 55-184 11-129 (145)
250 PF02714 DUF221: Domain of unk 44.1 41 0.00089 31.3 5.0 57 88-155 1-57 (325)
251 PF04624 Dec-1: Dec-1 repeat; 43.9 26 0.00056 18.9 2.0 7 1-7 6-12 (27)
252 PF00403 HMA: Heavy-metal-asso 43.9 92 0.002 20.5 6.3 54 255-310 1-58 (62)
253 KOG2891 Surface glycoprotein [ 43.7 23 0.00051 31.4 2.9 65 47-111 149-248 (445)
254 TIGR03636 L23_arch archaeal ri 43.5 86 0.0019 22.3 5.3 56 256-311 16-74 (77)
255 PF00403 HMA: Heavy-metal-asso 42.6 97 0.0021 20.3 6.2 53 49-103 1-57 (62)
256 PF08734 GYD: GYD domain; Int 40.4 1E+02 0.0023 22.5 5.6 46 61-106 22-68 (91)
257 PF08544 GHMP_kinases_C: GHMP 40.0 1.2E+02 0.0027 21.2 6.0 44 62-106 37-80 (85)
258 KOG2295 C2H2 Zn-finger protein 38.3 4.4 9.5E-05 39.6 -2.5 71 132-202 231-301 (648)
259 PF13046 DUF3906: Protein of u 37.8 44 0.00095 22.6 2.8 32 59-90 30-63 (64)
260 cd04889 ACT_PDH-BS-like C-term 34.3 1.3E+02 0.0027 19.2 5.2 42 61-102 12-55 (56)
261 PF08544 GHMP_kinases_C: GHMP 34.0 1.6E+02 0.0035 20.6 5.8 41 268-311 37-79 (85)
262 COG5624 TAF61 Transcription in 33.9 50 0.0011 31.2 3.6 10 267-276 460-469 (505)
263 KOG3982 Runt and related trans 33.3 56 0.0012 30.4 3.7 12 60-71 97-108 (475)
264 KOG1151 Tousled-like protein k 33.1 13 0.00029 35.7 -0.2 17 3-19 120-136 (775)
265 PF03439 Spt5-NGN: Early trans 30.6 98 0.0021 22.3 4.0 34 281-314 33-67 (84)
266 KOG4213 RNA-binding protein La 29.4 65 0.0014 26.9 3.2 56 45-104 109-169 (205)
267 PF02714 DUF221: Domain of unk 29.4 63 0.0014 30.0 3.7 31 294-326 1-31 (325)
268 cd04908 ACT_Bt0572_1 N-termina 28.6 1.8E+02 0.004 19.3 8.4 48 266-315 14-63 (66)
269 PF11823 DUF3343: Protein of u 27.9 84 0.0018 21.8 3.2 30 292-321 2-31 (73)
270 PRK11901 hypothetical protein; 27.8 1.7E+02 0.0037 27.1 5.8 63 130-197 243-307 (327)
271 KOG4008 rRNA processing protei 27.5 61 0.0013 28.3 2.8 36 42-77 35-70 (261)
272 PF03249 TSA: Type specific an 27.1 29 0.00063 32.3 0.9 10 61-70 341-350 (503)
273 KOG2295 C2H2 Zn-finger protein 27.1 14 0.0003 36.3 -1.2 68 252-321 230-303 (648)
274 PF03439 Spt5-NGN: Early trans 27.0 1.2E+02 0.0027 21.7 4.0 34 73-107 33-66 (84)
275 PF14893 PNMA: PNMA 26.2 67 0.0015 30.0 3.1 48 253-301 18-72 (331)
276 PF10281 Ish1: Putative stress 25.9 66 0.0014 19.1 2.0 17 58-74 3-19 (38)
277 PF11498 Activator_LAG-3: Tran 25.6 23 0.0005 32.6 0.0 24 1-24 349-372 (468)
278 COG2608 CopZ Copper chaperone 25.2 1.7E+02 0.0037 20.1 4.4 45 254-300 4-48 (71)
279 KOG3982 Runt and related trans 24.9 85 0.0018 29.3 3.4 9 202-210 214-222 (475)
280 PF09902 DUF2129: Uncharacteri 24.9 1.8E+02 0.0039 20.3 4.2 39 66-109 15-53 (71)
281 PRK11901 hypothetical protein; 24.8 1.5E+02 0.0032 27.5 4.9 51 58-109 253-308 (327)
282 PF15407 Spo7_2_N: Sporulation 24.5 32 0.00068 23.7 0.5 25 46-70 26-50 (67)
283 PHA01632 hypothetical protein 23.9 78 0.0017 20.6 2.1 21 50-70 19-39 (64)
284 PRK10927 essential cell divisi 23.2 2E+02 0.0043 26.6 5.4 62 48-113 248-312 (319)
285 KOG4008 rRNA processing protei 23.0 73 0.0016 27.9 2.5 33 253-287 40-72 (261)
286 COG5193 LHP1 La protein, small 22.9 45 0.00098 31.5 1.3 61 132-192 174-244 (438)
287 KOG4592 Uncharacterized conser 22.6 43 0.00093 33.6 1.2 6 49-54 235-240 (728)
288 PF11061 DUF2862: Protein of u 22.3 2.3E+02 0.0051 19.3 4.3 39 259-300 10-51 (64)
289 COG0445 GidA Flavin-dependent 22.1 3.2E+02 0.0069 27.7 6.8 104 177-299 239-343 (621)
290 PF11411 DNA_ligase_IV: DNA li 22.0 73 0.0016 18.9 1.6 16 57-72 19-34 (36)
291 KOG3878 Protein involved in ma 21.7 2.8E+02 0.006 25.7 5.9 55 57-123 301-368 (469)
292 cd00187 TOP4c DNA Topoisomeras 21.2 4.7E+02 0.01 25.8 7.9 94 48-155 226-326 (445)
293 PRK02302 hypothetical protein; 20.6 2.2E+02 0.0048 20.8 4.2 39 66-109 21-59 (89)
294 PRK10629 EnvZ/OmpR regulon mod 20.4 4.3E+02 0.0094 20.8 8.1 68 47-118 35-106 (127)
295 PF02166 Androgen_recep: Andro 20.0 35 0.00076 31.4 0.0 9 313-321 335-343 (423)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.4e-47 Score=361.82 Aligned_cols=280 Identities=28% Similarity=0.457 Sum_probs=225.5
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
+..+|||+|||.+++|+||+++|+.||+|.+|+|++++ ++|||||+|.+.++|.+|++.|||..|.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999875 46899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
+... .....+|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 6542 2345689999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred --eEEEEEEccCCCCCCCccccC------CC-ccccccc------------C---CCC-------c--------------
Q 015069 202 --RQIRCNWAAKGATSGDEKQSS------DS-KSVVELT------------N---GIS-------E-------------- 236 (413)
Q Consensus 202 --~~i~v~~~~~~~~~~~~~~~~------~~-~~~~~~~------------~---~~~-------~-------------- 236 (413)
++|.|.|+............. .. ....... . ... .
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 678888886544211100000 00 0000000 0 000 0
Q ss_pred ---ccccc-----------CCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEE
Q 015069 237 ---DGQEK-----------SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFV 296 (413)
Q Consensus 237 ---~~~~~-----------~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV 296 (413)
..... .....+.....+.+|||+|||+++++++|+++|++| |.|.+++|++| ||||||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcCCCCCccceEEE
Confidence 00000 000011112334579999999999999999999999 99999999876 799999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 297 RYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 297 ~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
+|.+.++|.+|++.|||..|+||.|+|.|..++.
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999998764
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-44 Score=301.54 Aligned_cols=237 Identities=40% Similarity=0.740 Sum_probs=204.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
+.+.|||||+||..++||+-|..+|++.|+|..++|+.+ +|+|.|+...
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p 51 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAP 51 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCc
Confidence 456899999999999999999999999999999999876 5667766544
Q ss_pred CC--CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 124 SQ--REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 124 ~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
.. ......+..|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..++|..|++
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 22 2233346779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccc
Q 015069 202 RQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281 (413)
Q Consensus 202 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~ 281 (413)
|.|+-.|+.++......+. ... .+......+..++|||+||+..+||++|++.|++| |.
T Consensus 132 R~IRTNWATRKp~e~n~~~----ltf---------------deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f--G~ 190 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGKP----LTF---------------DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF--GP 190 (321)
T ss_pred ceeeccccccCccccCCCC----ccH---------------HHHhccCCCCCceEEeCCcCccccHHHHHHhcccC--Cc
Confidence 9999999988862221111 000 11122233455899999999999999999999999 99
Q ss_pred eEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q 015069 282 IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 332 (413)
Q Consensus 282 i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~ 332 (413)
|.+||+.+++||+||.|.+.|.|.+||..+|+.+|+|..++|.|.|.....
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999999999999999999876654
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=290.05 Aligned_cols=304 Identities=29% Similarity=0.418 Sum_probs=236.6
Q ss_pred CCcccCCCCCCCccCCCCCCCCCCCCCC-eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCH
Q 015069 21 HPSLLAAPQIEPILSGNLPPRFDASTCR-SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDR 95 (413)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~ 95 (413)
.|....++..+..-..+..+..+..+++ .|.|.-||...|++||+.+|...|+|++|++++|+- -||+||.|.++
T Consensus 14 ~p~~~~~~~~p~t~~~~~~~~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p 93 (360)
T KOG0145|consen 14 GPTSPVQTNGPSTNRNNCSSGNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRP 93 (360)
T ss_pred CCCCCcccCCCcccCCcCCCCCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecCh
Confidence 4443333333333333334444334444 477888999999999999999999999999999984 57999999999
Q ss_pred HHHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCccc
Q 015069 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRG 175 (413)
Q Consensus 96 ~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g 175 (413)
+||.+|+..|||-.+..++|+|+|+.+.+.. .....|||++||+.++..||.++|+.||.|...+|+.|..+|.+||
T Consensus 94 ~DAe~AintlNGLrLQ~KTIKVSyARPSs~~---Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 94 KDAEKAINTLNGLRLQNKTIKVSYARPSSDS---IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRG 170 (360)
T ss_pred HHHHHHHhhhcceeeccceEEEEeccCChhh---hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecc
Confidence 9999999999999999999999999877643 3345799999999999999999999999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCe--EEEEEEccCCCCCCCccccCC--Ccccccc---------------------
Q 015069 176 FGFVSFRNQEDAQSAINDLNGKWLGNR--QIRCNWAAKGATSGDEKQSSD--SKSVVEL--------------------- 230 (413)
Q Consensus 176 ~afV~f~~~~~A~~a~~~l~g~~l~g~--~i~v~~~~~~~~~~~~~~~~~--~~~~~~~--------------------- 230 (413)
.+||.|+..++|++||..|||..-.|. +|.|+|+............+. ..+....
T Consensus 171 VgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~ 250 (360)
T KOG0145|consen 171 VGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHA 250 (360)
T ss_pred eeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhh
Confidence 999999999999999999999987664 799999865533221110000 0000000
Q ss_pred ----cCCCCccc-cccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeC
Q 015069 231 ----TNGISEDG-QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYS 299 (413)
Q Consensus 231 ----~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~ 299 (413)
.+....+. ........+.......+|||-||.++.+|.-|.++|.+| |-|..|++++| |||+||.+.
T Consensus 251 ~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~ttnkCKGfgFVtMt 328 (360)
T KOG0145|consen 251 AQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFTTNKCKGFGFVTMT 328 (360)
T ss_pred hhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCCcccccceeEEEec
Confidence 00000000 000111122233346899999999999999999999999 99999999998 899999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 300 THPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 300 ~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
+.++|..|+..|||..+++|.|.|+|..++
T Consensus 329 NYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 329 NYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred chHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999998654
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-42 Score=309.39 Aligned_cols=242 Identities=24% Similarity=0.412 Sum_probs=214.4
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCccc-CcceEEEec
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNWA 120 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~-g~~l~v~~~ 120 (413)
.-+-|||+.||.++.|+||..+|++.|+|-++++++++ ++|||||.|++.+.|++|++.||+..|. |+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 35679999999999999999999999999999999984 5899999999999999999999999997 899999987
Q ss_pred ccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCC-eeeEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHh-CC-
Q 015069 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVMWDQ-KTGRSRGFGFVSFRNQEDAQSAINDL-NG- 196 (413)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~~d~-~~~~~~g~afV~f~~~~~A~~a~~~l-~g- 196 (413)
..+ ++|||+|||+++++++|.+.|++.++ |++|.+..+. ...++||||||+|.+..+|..|.+.| ++
T Consensus 162 van---------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 162 VAN---------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred eec---------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 544 57999999999999999999999974 6666666543 34678999999999999999999887 33
Q ss_pred ceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhc
Q 015069 197 KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHA 276 (413)
Q Consensus 197 ~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~ 276 (413)
..++|..+.|+|+++....+.. .....+.|||+||+.++|+|.|+++|+.
T Consensus 233 ~klwgn~~tVdWAep~~e~ded------------------------------~ms~VKvLYVRNL~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDED------------------------------TMSKVKVLYVRNLMESTTEETLKKLFNE 282 (506)
T ss_pred eeecCCcceeeccCcccCCChh------------------------------hhhheeeeeeeccchhhhHHHHHHHHHh
Confidence 4589999999999877544322 2233477999999999999999999999
Q ss_pred cCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 277 LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 277 ~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
| |.|++|+.++| ||||+|.+.++|.+||+.+||++|+|..|.|.+||+..
T Consensus 283 ~--G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 283 F--GKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred c--cceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 9 99999999988 99999999999999999999999999999999999765
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.8e-41 Score=331.19 Aligned_cols=277 Identities=20% Similarity=0.234 Sum_probs=215.4
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHh--CCCcccCcceEEEecccC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL--NGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l--~~~~i~g~~l~v~~~~~~ 123 (413)
++++|||+|||++++|++|+++|++||+|.+|.++++ +++|||+|.+.++|.+|++.+ ++..|.|+.|+|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~--k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG--KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC--CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4789999999999999999999999999999999864 579999999999999999864 788999999999999754
Q ss_pred CCCCCC---------CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015069 124 SQREDT---------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (413)
Q Consensus 124 ~~~~~~---------~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l 194 (413)
...... ....+|+|.||++.+++++|+++|+.||.|.++.++++. .+++|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 322111 122479999999999999999999999999999998653 2478999999999999999999
Q ss_pred CCceecC--eEEEEEEccCCCCCC---CccccCCCcccc----------------c----------ccCCCCcc------
Q 015069 195 NGKWLGN--RQIRCNWAAKGATSG---DEKQSSDSKSVV----------------E----------LTNGISED------ 237 (413)
Q Consensus 195 ~g~~l~g--~~i~v~~~~~~~~~~---~~~~~~~~~~~~----------------~----------~~~~~~~~------ 237 (413)
||..|.| +.|+|.|+......- +.+......+.. . ...+....
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999854 589999986533210 000000000000 0 00000000
Q ss_pred --------------ccc-----------cCCCCCCCCCCcccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeecc-
Q 015069 238 --------------GQE-----------KSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD- 290 (413)
Q Consensus 238 --------------~~~-----------~~~~~~~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~- 290 (413)
... ..........++.++|||+|||. .+|+++|+++|+.| |.|.+|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY--GNVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 000 00000011234678999999997 69999999999999 99999999987
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 291 KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 291 kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
+|+|||+|.+.++|.+|+..|||..|.|++|+|.+++...
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 6999999999999999999999999999999999987653
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.8e-42 Score=343.91 Aligned_cols=266 Identities=32% Similarity=0.496 Sum_probs=225.5
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.....+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|++.+||..+.|+.|.|...
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 3445689999999999999999999999999999998864 5799999999999999999999999999999999877
Q ss_pred ccCCCCC--CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 121 YASSQRE--DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 121 ~~~~~~~--~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
..+..+. .....++|||+||+.++++++|+++|+.||.|.++.+..+ .+|+++|||||+|.+.++|.+|++.++|..
T Consensus 165 ~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 165 IKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 6554442 3345578999999999999999999999999999999988 578999999999999999999999999999
Q ss_pred ec----CeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHh
Q 015069 199 LG----NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 274 (413)
Q Consensus 199 l~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F 274 (413)
+. |+.+.|.++..+.............. ...........+|||+||+..+|+++|+++|
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~-----------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEEL-----------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHhh-----------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 99 99999988765543211100000000 0000112234679999999999999999999
Q ss_pred hccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 275 HALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 275 ~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
+.| |.|++|+++.+ +|||||+|.+.++|.+|++.|||+.|+|++|.|.|+..+
T Consensus 307 ~~~--G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 307 SEC--GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred Hhc--CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999 99999999866 699999999999999999999999999999999999764
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-42 Score=342.72 Aligned_cols=248 Identities=31% Similarity=0.562 Sum_probs=218.2
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
+|||+|||.++||++|+++|++||+|.+|+|++++ ++|||||+|.+.++|.+|++.+++..|.|+.|+|.|+..+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999875 36899999999999999999999999999999999986443
Q ss_pred CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 125 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
.. ......+|||+|||.++++++|+++|+.||.|.++++..+ .+|+++|||||+|.+.++|.+|++.++|..+.|+.|
T Consensus 82 ~~-~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SL-RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cc-cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2234567999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEE
Q 015069 205 RCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED 284 (413)
Q Consensus 205 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~ 284 (413)
.|.....+.... .......++|||+|||.++|+++|+++|+.| |.|.+
T Consensus 160 ~v~~~~~~~~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f--G~i~~ 207 (562)
T TIGR01628 160 YVGRFIKKHERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF--GEITS 207 (562)
T ss_pred EEeccccccccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhc--CCEEE
Confidence 997654332211 0011223679999999999999999999999 99999
Q ss_pred EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC----CeeEEEEecCCCC
Q 015069 285 VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKCSWGSKPT 330 (413)
Q Consensus 285 v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~----gr~l~V~~a~~~~ 330 (413)
+.+.++ +|||||+|.+.++|.+|++.|||..|. |+.|.|.++.++.
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 999865 789999999999999999999999999 9999998886543
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.7e-41 Score=328.20 Aligned_cols=245 Identities=23% Similarity=0.366 Sum_probs=207.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec---CCCceEEEEEcCHHHHHHHHHHhCCCccc-CcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIF-GQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~---~~~g~afV~F~~~~~A~~A~~~l~~~~i~-g~~l~v~~~~ 121 (413)
..++|||+|||.+++|++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+||+.||+..|. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 3588999999999999999999999999999999987 35899999999999999999999999886 7888887653
Q ss_pred cCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCC-eeeEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--c
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLNG--K 197 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~-~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~ 197 (413)
..++|||+|||.++++++|.+.|++++. +.++.+. .+...++++|||||+|.++++|..|++.|+. .
T Consensus 137 ---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 137 ---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 2468999999999999999999999864 4444333 2334568899999999999999999998853 4
Q ss_pred eecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhcc
Q 015069 198 WLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 277 (413)
Q Consensus 198 ~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~ 277 (413)
.++|+.|.|+|+.+...... ......++|||+||+.++|+++|+++|+.|
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~------------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDE------------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred EecCceEEEEeecccccccc------------------------------cccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999866432211 111223689999999999999999999999
Q ss_pred CccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 278 CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 278 ~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
..|.|++|++++ +||||+|.+.++|.+|++.|||.+|+|+.|+|+|++++..
T Consensus 258 ~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 258 KPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 667999998775 5999999999999999999999999999999999987543
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.7e-40 Score=318.36 Aligned_cols=167 Identities=22% Similarity=0.413 Sum_probs=151.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
..++|||+|||+++++++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|.+|++.+||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35789999999999999999999999999999998874 58999999999999999999999999999999998754
Q ss_pred cCCC--------CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015069 122 ASSQ--------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (413)
Q Consensus 122 ~~~~--------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (413)
.... .......++|||+||++++++++|+++|+.||.|.++++.+|+.++++||||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 3211 11223457899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecCeEEEEEEccCC
Q 015069 194 LNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 194 l~g~~l~g~~i~v~~~~~~ 212 (413)
+|+..|+|+.|+|.++..+
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998653
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.7e-40 Score=320.24 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=215.3
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecccCC
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~~~~ 124 (413)
..+|+|+||++.+++++|+++|+.||.|.+|.|++++.+++|||+|.+.++|.+|++.|||..|.| +.|+|.|++...
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 457999999999999999999999999999999888777899999999999999999999999975 478888876311
Q ss_pred C--------C-----------------------C----------------------------------------------
Q 015069 125 Q--------R-----------------------E---------------------------------------------- 127 (413)
Q Consensus 125 ~--------~-----------------------~---------------------------------------------- 127 (413)
. . .
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0 0 0
Q ss_pred ---------------CCCCCceEEEcCCCc-ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 015069 128 ---------------DTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (413)
Q Consensus 128 ---------------~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~ 191 (413)
...++.+|||+||+. .+++++|+++|+.||.|.++++++++ +|+|||+|.+.++|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLAL 330 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHH
Confidence 011346899999997 69999999999999999999999762 699999999999999999
Q ss_pred HHhCCceecCeEEEEEEccCCCCCCCcccc-CCCcc-cccccCCCCccccc-cCCCCCCCCCCcccEEEEecCCCCCCHH
Q 015069 192 NDLNGKWLGNRQIRCNWAAKGATSGDEKQS-SDSKS-VVELTNGISEDGQE-KSNEDAPENNPQYTTVYVGNLSSEVTSV 268 (413)
Q Consensus 192 ~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~t~e 268 (413)
..|+|..|.|++|+|.++............ ..... ..... ........ ..........++..+|||+|||..+|++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYS-SSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccccccc-CCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 999999999999999998554322111100 00000 00000 00000000 0000111224577899999999999999
Q ss_pred HHHHHhhccCccc--eEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCee------EEEEecCCC
Q 015069 269 DLHRHFHALCVGT--IEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKP------IKCSWGSKP 329 (413)
Q Consensus 269 ~L~~~F~~~~~G~--i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~------l~V~~a~~~ 329 (413)
+|+++|+.| |. |..+++... +++|||+|.+.++|.+|+..|||+.|.|+. |+|+|++++
T Consensus 410 ~L~~lF~~~--G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAEN--GVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhc--CCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999 76 899988754 599999999999999999999999999985 999999764
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.2e-39 Score=316.46 Aligned_cols=282 Identities=27% Similarity=0.418 Sum_probs=220.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...+.++|||+|||.++++++|+++|++||+|.+|.++.++ ++|||||+|.+.++|.+|+. |+|..|.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34567899999999999999999999999999999999874 47899999999999999996 99999999999999
Q ss_pred ecccCCCC---------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 015069 119 WAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQS 189 (413)
Q Consensus 119 ~~~~~~~~---------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~ 189 (413)
++...... .......+|||+|||..+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 87543211 112336789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceecCeEEEEEEccCCCCCCCccccCC--------Ccc----------------c---ccccCCCC-------
Q 015069 190 AINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSD--------SKS----------------V---VELTNGIS------- 235 (413)
Q Consensus 190 a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~--------~~~----------------~---~~~~~~~~------- 235 (413)
|++.|+|..|.|++|.|.|+.............. ... . .....+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ 323 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc
Confidence 9999999999999999999753221110000000 000 0 00000000
Q ss_pred ---ccc--c--------------ccCCCCCCC--CCCcccEEEEecCCCCCC----------HHHHHHHhhccCccceEE
Q 015069 236 ---EDG--Q--------------EKSNEDAPE--NNPQYTTVYVGNLSSEVT----------SVDLHRHFHALCVGTIED 284 (413)
Q Consensus 236 ---~~~--~--------------~~~~~~~~~--~~~~~~~l~V~nLp~~~t----------~e~L~~~F~~~~~G~i~~ 284 (413)
... . .......+. ...+..+|+|.||....+ .+||++.|++| |.|..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~--G~v~~ 401 (457)
T TIGR01622 324 KLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY--GGVVH 401 (457)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc--CCeeE
Confidence 000 0 000000001 235678999999965443 36899999999 99999
Q ss_pred EEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 285 VRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 285 v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
|.+... .|++||+|.+.++|.+|++.|||+.|+||.|.+.|..
T Consensus 402 v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 999743 7999999999999999999999999999999999874
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.9e-39 Score=321.22 Aligned_cols=274 Identities=18% Similarity=0.285 Sum_probs=214.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhcc------------CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCc
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSST------------GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH 109 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~------------G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~ 109 (413)
......++|||+|||+++|+++|+++|+.+ +.|..+.+ .+.+|||||+|.+.++|..||. |+|..
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 455678999999999999999999999975 24444444 3457899999999999999995 99999
Q ss_pred ccCcceEEEecccCCCC--------------------------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEE
Q 015069 110 IFGQPIKVNWAYASSQR--------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDAR 163 (413)
Q Consensus 110 i~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 163 (413)
|.|+.|+|......... ......++|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 99999999754322100 0112346899999999999999999999999999999
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCC
Q 015069 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSN 243 (413)
Q Consensus 164 i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (413)
++.+..+|.++|||||+|.+.++|..|++.|+|..|+|+.|.|.++................+....... ...
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 399 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKA-------LSQ 399 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccccc-------chh
Confidence 9999999999999999999999999999999999999999999998654332211111000000000000 000
Q ss_pred CCCCCCCCcccEEEEecCCCC--C--------CHHHHHHHhhccCccceEEEEeecc---------ccEEEEEeCCHHHH
Q 015069 244 EDAPENNPQYTTVYVGNLSSE--V--------TSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEA 304 (413)
Q Consensus 244 ~~~~~~~~~~~~l~V~nLp~~--~--------t~e~L~~~F~~~~~G~i~~v~~~~~---------kg~afV~f~~~~~A 304 (413)
........+..+|+|.||... + ..++|+++|++| |.|..|.|+++ .|++||+|.+.++|
T Consensus 400 ~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~--G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 400 SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY--GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc--CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 011122345688999999642 1 236899999999 99999999864 48999999999999
Q ss_pred HHHHHHhCCCeeCCeeEEEEecC
Q 015069 305 ALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 305 ~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.+|+..|||+.|+|+.|.|.|..
T Consensus 478 ~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHcCCCEECCeEEEEEEeC
Confidence 99999999999999999999864
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.9e-38 Score=286.40 Aligned_cols=279 Identities=25% Similarity=0.427 Sum_probs=219.7
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.||||++||++++.++|.++|+.+|+|..+.++.++ ++||+||.|.-.||+..|+..+++..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999875 4899999999999999999999999999999999988654
Q ss_pred CCCC---------------------C--CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEE
Q 015069 124 SQRE---------------------D--TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVS 180 (413)
Q Consensus 124 ~~~~---------------------~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~ 180 (413)
.... . ..+..+|.|+|||+.+...+|+.+|+.||.|.+|.|.+.+. |+..|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEE
Confidence 3211 1 12257899999999999999999999999999999996654 5555999999
Q ss_pred eCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCcc-------------------ccCCCcccc-----------cc
Q 015069 181 FRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEK-------------------QSSDSKSVV-----------EL 230 (413)
Q Consensus 181 f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~-------------------~~~~~~~~~-----------~~ 230 (413)
|....+|..|++.+|+..|+||+|.|.|+..+....... ...+..... ..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 999999999999999999999999999997665433211 000000000 00
Q ss_pred cCCCC------------cccccc---C----------CCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEE
Q 015069 231 TNGIS------------EDGQEK---S----------NEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 285 (413)
Q Consensus 231 ~~~~~------------~~~~~~---~----------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v 285 (413)
.++.+ .+.... + .........-..+|||+|||+++|+|+|.++|+.| |.|.++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF--G~v~ya 322 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF--GEVKYA 322 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh--ccceeE
Confidence 00000 000000 0 00001122234899999999999999999999999 999999
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHh-----CC-CeeCCeeEEEEecCCC
Q 015069 286 RVQRD------KGFGFVRYSTHPEAALAIQMG-----NA-RILCGKPIKCSWGSKP 329 (413)
Q Consensus 286 ~~~~~------kg~afV~f~~~~~A~~A~~~l-----~g-~~l~gr~l~V~~a~~~ 329 (413)
.++.+ +|+|||.|.+..+|..||... .| ..|+||.|+|..+-.+
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99865 799999999999999999976 34 5789999999988543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.6e-38 Score=278.66 Aligned_cols=285 Identities=26% Similarity=0.400 Sum_probs=227.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCc-ccC--cce
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRH-IFG--QPI 115 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~-i~g--~~l 115 (413)
.+.+.-++||+.||.+++|.||+++|++||.|.+|.|++||. +||+||.|.+.++|.+|+..|++.+ |-| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 346667899999999999999999999999999999999984 7899999999999999999998854 555 688
Q ss_pred EEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 116 KVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
.|+++.....+. ..+++|||+.|++.++|.|++++|++||.|++|.|++| ..+.+||||||.|.+.|.|..||+.+|
T Consensus 110 qvk~Ad~E~er~--~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 110 QVKYADGERERI--VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred eecccchhhhcc--ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhc
Confidence 888886655443 66788999999999999999999999999999999999 579999999999999999999999999
Q ss_pred Cce-ecC--eEEEEEEccCCCCCCCccccC--------------------------------------------------
Q 015069 196 GKW-LGN--RQIRCNWAAKGATSGDEKQSS-------------------------------------------------- 222 (413)
Q Consensus 196 g~~-l~g--~~i~v~~~~~~~~~~~~~~~~-------------------------------------------------- 222 (413)
|.. +.| .+|.|+|++.++....+....
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L 266 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPL 266 (510)
T ss_pred cceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCC
Confidence 975 666 589999998776543111000
Q ss_pred -------------------------CCcccccccCCCC---------------cc----c--------------------
Q 015069 223 -------------------------DSKSVVELTNGIS---------------ED----G-------------------- 238 (413)
Q Consensus 223 -------------------------~~~~~~~~~~~~~---------------~~----~-------------------- 238 (413)
.+.....+....+ .. .
T Consensus 267 ~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n 346 (510)
T KOG0144|consen 267 GPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYN 346 (510)
T ss_pred CCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcc
Confidence 0000000000000 00 0
Q ss_pred ---------------------------------------------------------------cccCCCCCCCCCCcccE
Q 015069 239 ---------------------------------------------------------------QEKSNEDAPENNPQYTT 255 (413)
Q Consensus 239 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 255 (413)
..........+++.+..
T Consensus 347 ~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGan 426 (510)
T KOG0144|consen 347 LAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGAN 426 (510)
T ss_pred cccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccc
Confidence 00000111224566788
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
|||.+||.+.-+.+|...|.+| |.|.+.++..| |.|+||.|++..+|..||..|||+.|++++|+|.+.+++
T Consensus 427 lfiyhlPqefgdq~l~~~f~pf--G~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 427 LFIYHLPQEFGDQDLIATFQPF--GGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eeeeeCchhhhhHHHHHHhccc--cceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 9999999999999999999999 99999988766 679999999999999999999999999999999998776
Q ss_pred CCC
Q 015069 330 TPP 332 (413)
Q Consensus 330 ~~~ 332 (413)
..+
T Consensus 505 ~np 507 (510)
T KOG0144|consen 505 NNP 507 (510)
T ss_pred CCC
Confidence 543
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.3e-33 Score=270.92 Aligned_cols=174 Identities=26% Similarity=0.508 Sum_probs=149.5
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..++|||+||++++++++|+++|+.||+|.++++++|+.+|+++|||||+|.+.++|.+|++.++|..++||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
....... .. ..........++|||+|||+++++++|+++|+.| |.|.++++.++
T Consensus 186 ~~p~a~~---------~~---------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svrl~~D 239 (612)
T TIGR01645 186 NMPQAQP---------II---------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARA 239 (612)
T ss_pred ccccccc---------cc---------------ccccccccccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEEEEec
Confidence 2211000 00 0000111234689999999999999999999999 99999999865
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
||||||+|.+.++|.+|++.||+..|+|+.|+|.++..+.
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 7999999999999999999999999999999999998654
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2e-32 Score=253.09 Aligned_cols=169 Identities=25% Similarity=0.441 Sum_probs=153.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
.....++|||+|||+++||++|+++|+.||+|++|+|++++ ++|||||+|.++++|.+|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999875 46899999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
|+.+... .....+|||+|||.++++++|+++|++||.|..++|++|+.+++++|||||+|.+.++|++|++.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9876432 2345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC--eEEEEEEccCCCC
Q 015069 199 LGN--RQIRCNWAAKGAT 214 (413)
Q Consensus 199 l~g--~~i~v~~~~~~~~ 214 (413)
+.+ ++|.|.++.....
T Consensus 260 ~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCceeEEEEECCcccc
Confidence 866 7899999876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-32 Score=254.20 Aligned_cols=238 Identities=32% Similarity=0.557 Sum_probs=211.4
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR 126 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~ 126 (413)
.+|||+ +++||..|.++|+.+|+|.+|+++++- +-|||||+|.++++|.+||+++|...+.|++|++-|+..+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 368998 899999999999999999999999986 3479999999999999999999999999999999998765433
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
|||.||+++++..+|.++|+.||.|.+|++..|. .| ++|| ||+|++++.|.+|++.+||..+.|++|.|
T Consensus 79 --------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 --------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred --------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 9999999999999999999999999999999984 44 9999 99999999999999999999999999999
Q ss_pred EEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEE
Q 015069 207 NWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~ 286 (413)
.....+......... .......++|.|++.+++++.|.++|..+ |.|.++.
T Consensus 148 g~~~~~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i~s~~ 198 (369)
T KOG0123|consen 148 GLFERKEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAY--GSITSVA 198 (369)
T ss_pred eeccchhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhccc--CcceEEE
Confidence 887665433221111 11222569999999999999999999999 9999999
Q ss_pred eecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 287 VQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 287 ~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
++++ +||+||.|.+.++|..|++.||+..+.+..+.|..+.+
T Consensus 199 v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 199 VMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9876 79999999999999999999999999999999987765
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.2e-32 Score=250.89 Aligned_cols=168 Identities=32% Similarity=0.503 Sum_probs=151.0
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||+|++++|++|+.+++++|||||+|.++++|.+|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEE
Q 015069 207 NWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~ 286 (413)
.|+.+.... ...++|||+|||..+|+++|+++|++| |.|++++
T Consensus 182 ~~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~f--G~V~~v~ 224 (346)
T TIGR01659 182 SYARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKY--GQIVQKN 224 (346)
T ss_pred ecccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhc--CCEEEEE
Confidence 987542110 012569999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCCC
Q 015069 287 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTP 331 (413)
Q Consensus 287 ~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~~~~~ 331 (413)
++++ ||+|||+|.+.++|.+|++.||+..|.+ ++|+|.|++....
T Consensus 225 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 225 ILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9877 5899999999999999999999998866 7999999987544
No 19
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.2e-31 Score=248.99 Aligned_cols=260 Identities=32% Similarity=0.520 Sum_probs=219.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ 125 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~ 125 (413)
+.|||.||+.+++.++|.++|+.||+|.+|++..+.+ +|| ||+|.+++.|++|++.+||..+.|+.|.|.....+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3499999999999999999999999999999999764 789 9999999999999999999999999999988776554
Q ss_pred CCCCCC-----CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 126 REDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 126 ~~~~~~-----~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
+..... -..+++.+++.+.++++|.++|..+|.|.++.++.+ ..+++++|+||+|.+.++|..|++.+++..++
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 433322 346999999999999999999999999999999988 55679999999999999999999999999999
Q ss_pred CeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCcc
Q 015069 201 NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG 280 (413)
Q Consensus 201 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G 280 (413)
+..+.|..+..+.+....-...... .............|||.||+..++.+.|++.|+.| |
T Consensus 235 ~~~~~V~~aqkk~e~~~~l~~~~~~-----------------~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~--G 295 (369)
T KOG0123|consen 235 DKELYVGRAQKKSEREAELKRKFEQ-----------------EFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF--G 295 (369)
T ss_pred ccceeecccccchhhHHHHhhhhHh-----------------hhhhccccccccccccccCccccchhHHHHHHhcc--c
Confidence 9999988776632221111000000 00111112334679999999999999999999999 9
Q ss_pred ceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 281 TIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 281 ~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
+|.++++..+ +|++||.|.+.++|.+|+..+|+..+.+++|.|.++..
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 9999999865 89999999999999999999999999999999988763
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=225.65 Aligned_cols=164 Identities=22% Similarity=0.425 Sum_probs=146.0
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
++|||+.|.+++.|+.|+..|..||+|+++.+-.| +++|||||+|+-+|.|..|++.+||..+.||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 57999999999999999999999999999999876 45899999999999999999999999999999999854321
Q ss_pred CCC--------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 124 SQR--------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 124 ~~~--------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
... ++...-++|||..+.++.+|+||+..|+.||+|.+|.+-+++.++.+|||+||+|.+..+-..|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 111 112234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCeEEEEEEccC
Q 015069 196 GKWLGNRQIRCNWAAK 211 (413)
Q Consensus 196 g~~l~g~~i~v~~~~~ 211 (413)
=..++|..|+|-.+..
T Consensus 274 lFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVT 289 (544)
T ss_pred hhhcccceEecccccC
Confidence 9999999999977643
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=2e-30 Score=245.36 Aligned_cols=257 Identities=24% Similarity=0.339 Sum_probs=212.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
..+..+.|+|+|||..+..++|..+|..||+|..|.+. +....|+|+|.++.+|.+|+..|.+..+...++++.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 44566789999999999999999999999999988443 4445799999999999999999999999999999988752
Q ss_pred CCCC--------------------------------C---------------CCCCCceEEEcCCCcccChHHHHhhhcc
Q 015069 123 SSQR--------------------------------E---------------DTSGHFNVFVGDLSPEVTDATLFACFSV 155 (413)
Q Consensus 123 ~~~~--------------------------------~---------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 155 (413)
.... . ......+|||.||+++.+.+++...|.+
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 2100 0 0001123999999999999999999999
Q ss_pred CCCeeeEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccC
Q 015069 156 FPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTN 232 (413)
Q Consensus 156 ~G~v~~~~i~~d~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
.|.|.++.|...+.. -.+.|||||+|.+.++|..|++.|+|+.|+|+.|.|.++..+......+
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK------------- 605 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK------------- 605 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc-------------
Confidence 999999988754322 1356999999999999999999999999999999999987222111110
Q ss_pred CCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHH
Q 015069 233 GISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAAL 306 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~ 306 (413)
.......+..|+|+|||+..+..+++++|..| |.|.+|+|++. +|||||+|-++.+|.+
T Consensus 606 -------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 606 -------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred -------------ccccccccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 01111225789999999999999999999999 99999999865 8999999999999999
Q ss_pred HHHHhCCCeeCCeeEEEEecCCC
Q 015069 307 AIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 307 A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
|+..|.+..|.||+|-+.|++..
T Consensus 671 A~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHhhcccceechhhheehhccc
Confidence 99999999999999999999763
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.7e-29 Score=236.03 Aligned_cols=163 Identities=31% Similarity=0.532 Sum_probs=147.4
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
+..+|||+|||+++++++|+++|+.||+|.+++|++|+.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
+.... ....+|||+|||..+++++|+++|+.| |.|..+++..+
T Consensus 82 ~~~~~-----------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~--G~i~~~~~~~~ 124 (352)
T TIGR01661 82 PSSDS-----------------------------------IKGANLYVSGLPKTMTQHELESIFSPF--GQIITSRILSD 124 (352)
T ss_pred ccccc-----------------------------------cccceEEECCccccCCHHHHHHHHhcc--CCEEEEEEEec
Confidence 43210 012579999999999999999999999 99999998764
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPT 330 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~~~~ 330 (413)
+|+|||+|.+.++|.+|++.|||..+.| ++|+|.|+..+.
T Consensus 125 ~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 125 NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 7899999999999999999999999877 679999987655
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=1.3e-29 Score=233.72 Aligned_cols=283 Identities=24% Similarity=0.380 Sum_probs=218.6
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
...+..+|||+-.|+..+++.||.+||+.+|.|.+|.++.++ ++|.|||+|.+.++...|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 345677999999999999999999999999999999999986 47899999999999999995 9999999999999
Q ss_pred EecccCCCC-----------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHH
Q 015069 118 NWAYASSQR-----------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186 (413)
Q Consensus 118 ~~~~~~~~~-----------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~ 186 (413)
........+ ....+-.+|+|+||.+++++++|+.+|++||.|..|.+..|.+||.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 976432221 111222349999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceecCeEEEEEEccCCCCCCCccc-c--CCCcccccccCCCCc---------------------------
Q 015069 187 AQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQ-S--SDSKSVVELTNGISE--------------------------- 236 (413)
Q Consensus 187 A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~--------------------------- 236 (413)
|.+|++.|||..|-|+.|+|......-....... . .+......+..+...
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 9999999999999999999865533322221100 0 000000000000000
Q ss_pred --------------cccccCCCCCCCCCCcccEEEEecCCCCCC----------HHHHHHHhhccCccceEEEEeeccc-
Q 015069 237 --------------DGQEKSNEDAPENNPQYTTVYVGNLSSEVT----------SVDLHRHFHALCVGTIEDVRVQRDK- 291 (413)
Q Consensus 237 --------------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t----------~e~L~~~F~~~~~G~i~~v~~~~~k- 291 (413)
.....+....+....++.|+.++|+-...| .||+.+.+.+| |+|..|.+.+..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~--g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKH--GKVCHIFVDKNSA 490 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhc--CCeeEEEEccCCC
Confidence 000001111222336678888998843222 26888999999 999999998885
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 292 GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 292 g~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
|+.||.|.+.+.|..|++.|||++|.||.|...|-.
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999999999999999999999999999998864
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.3e-29 Score=226.20 Aligned_cols=166 Identities=25% Similarity=0.452 Sum_probs=147.5
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecC--eEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGN--RQIR 205 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-l~g--~~i~ 205 (413)
+.+.-++||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|+++. |.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3556789999999999999999999999999999999999999999999999999999999999998866 544 6888
Q ss_pred EEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEE
Q 015069 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 285 (413)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v 285 (413)
|+|++...+.. ...++|||+-|+..+||.+++++|++| |.|++|
T Consensus 111 vk~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~f--G~Ied~ 154 (510)
T KOG0144|consen 111 VKYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRF--GHIEDC 154 (510)
T ss_pred ecccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhh--Cccchh
Confidence 98886553321 112679999999999999999999999 999999
Q ss_pred Eeecc-----ccEEEEEeCCHHHHHHHHHHhCCC-eeCC--eeEEEEecCCCC
Q 015069 286 RVQRD-----KGFGFVRYSTHPEAALAIQMGNAR-ILCG--KPIKCSWGSKPT 330 (413)
Q Consensus 286 ~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~-~l~g--r~l~V~~a~~~~ 330 (413)
.|++| ||||||+|.+.+.|..|++.|||. .+.| .+|.|+||.+..
T Consensus 155 ~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 155 YILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred hheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 99987 999999999999999999999997 4666 489999997654
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6e-29 Score=228.04 Aligned_cols=265 Identities=25% Similarity=0.404 Sum_probs=197.0
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.-+|.|+|||+.+.+.+|..+|+.||.|.+|.|.+.+. .|||||.|.+..+|.+|++.+|+..|.||+|-|-|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56799999999999999999999999999999987543 589999999999999999999999999999999998632
Q ss_pred CC------------------------------------------------------------------------------
Q 015069 124 SQ------------------------------------------------------------------------------ 125 (413)
Q Consensus 124 ~~------------------------------------------------------------------------------ 125 (413)
..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 10
Q ss_pred ---------CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--
Q 015069 126 ---------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-- 194 (413)
Q Consensus 126 ---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-- 194 (413)
+.+.....+|||+|||+++++++|.+.|+.||+|..+.++.++.|++++|+|||.|.+..+|..||+..
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 000111256999999999999999999999999999999999999999999999999999999999977
Q ss_pred ---CC-ceecCeEEEEEEccCCCCCCCccc------cCCCcccccccCCCCccccccCC--------------------C
Q 015069 195 ---NG-KWLGNRQIRCNWAAKGATSGDEKQ------SSDSKSVVELTNGISEDGQEKSN--------------------E 244 (413)
Q Consensus 195 ---~g-~~l~g~~i~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 244 (413)
.| ..|+||.|.|..+..+....+... ......+.....+.-..+..... .
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~l 436 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKL 436 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhh
Confidence 23 678999999999876654322211 01111111111111111100000 0
Q ss_pred CCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCc---cce-EEEEeecc---------ccEEEEEeCCHHHHHHHHHHh
Q 015069 245 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV---GTI-EDVRVQRD---------KGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 245 ~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~---G~i-~~v~~~~~---------kg~afV~f~~~~~A~~A~~~l 311 (413)
..+......++|.|+|||..++...|..+....-. +.+ ..++.+++ .||+|+.|...+.|.+|++.+
T Consensus 437 knpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 437 KNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred cCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 11112234477999999999999999988764310 122 22333322 699999999999999999875
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=211.24 Aligned_cols=162 Identities=23% Similarity=0.314 Sum_probs=137.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHh-ccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~-~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
..|+|||+|||+++.+.||+++|+ +.|+|+.|.++.|. .+|||.|+|+++|.+++|++.||.+.+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 56899999999875 58999999999999999999999999999999998654
Q ss_pred cCCC------------------------------------------C---------------------------------
Q 015069 122 ASSQ------------------------------------------R--------------------------------- 126 (413)
Q Consensus 122 ~~~~------------------------------------------~--------------------------------- 126 (413)
.... +
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 2100 0
Q ss_pred -------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 127 -------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 127 -------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
-..+...++||.||.+.+....|++.|..-|.|..+.+-.|+. |.++|++.++|.++-.|..||..+++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0112234599999999999999999999999999999888865 68999999999999999999999987666
Q ss_pred cCeEEEEEE
Q 015069 200 GNRQIRCNW 208 (413)
Q Consensus 200 ~g~~i~v~~ 208 (413)
..++..+..
T Consensus 282 ~~~~~~~Rl 290 (608)
T KOG4212|consen 282 FDRRMTVRL 290 (608)
T ss_pred ccccceeec
Confidence 666655554
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1.3e-27 Score=234.43 Aligned_cols=175 Identities=30% Similarity=0.525 Sum_probs=149.7
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||.++++++|+++|+.||.|.+|+++.|+.+++++|||||+|.+.++|.+|+. ++|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3446789999999999999999999999999999999999999999999999999999999998 999999999999987
Q ss_pred ccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee
Q 015069 209 AAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~ 288 (413)
+........... .......+...+|||+|||..+|+++|+++|+.| |.|..|.+.
T Consensus 165 ~~~~~~~~~~~~-----------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~v~~~ 219 (457)
T TIGR01622 165 SQAEKNRAAKAA-----------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF--GDIEDVQLH 219 (457)
T ss_pred cchhhhhhhhcc-----------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEE
Confidence 643221110000 0000011225889999999999999999999999 999999998
Q ss_pred cc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 289 RD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 289 ~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+...
T Consensus 220 ~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 220 RDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 54 689999999999999999999999999999999998744
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-27 Score=201.75 Aligned_cols=163 Identities=29% Similarity=0.621 Sum_probs=148.8
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
.+.+--|||+.|..+++.++|++.|.+||+|.+++|++| |++||+||.|.+.++|++||..+||..|.+|.|+-.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 344666999999999999999999999999999999998 4689999999999999999999999999999999999
Q ss_pred cccCCCC-------------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHH
Q 015069 120 AYASSQR-------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186 (413)
Q Consensus 120 ~~~~~~~-------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~ 186 (413)
+..+... .....+++||++||+.-++|++|++.|+.||+|.+|++++| +||+||.|++.|+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhh
Confidence 9876532 22345678999999999999999999999999999999977 7999999999999
Q ss_pred HHHHHHHhCCceecCeEEEEEEccCC
Q 015069 187 AQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 187 A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
|.+||..+|+..+.|..+++.|....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999997544
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=2.9e-27 Score=229.43 Aligned_cols=223 Identities=21% Similarity=0.303 Sum_probs=170.4
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEec-----CCCceEEEEEcCHHHHHHHHHHhCC--CcccCcceE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKK-----DKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIK 116 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~-----~~~g~afV~F~~~~~A~~A~~~l~~--~~i~g~~l~ 116 (413)
.+.++|||+|||.++++++|++.|+++++ +.++.+... +++|||||+|.+.++|..|++.|+. ..++|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34688999999999999999999999974 555544432 3579999999999999999988864 457899999
Q ss_pred EEecccCCCCCC--CCCCceEEEcCCCcccChHHHHhhhccC--CCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 015069 117 VNWAYASSQRED--TSGHFNVFVGDLSPEVTDATLFACFSVF--PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 117 v~~~~~~~~~~~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (413)
|.|+.+...... ....++|||+||+.++++++|+++|+.| |.|++++++ ++||||+|.+.++|.+|++
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 999987654322 2345789999999999999999999999 999998876 4699999999999999999
Q ss_pred HhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHH
Q 015069 193 DLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHR 272 (413)
Q Consensus 193 ~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~ 272 (413)
.+|+..|+|+.|+|.|+.+............ ..+.................+...++++.|++++.+++.+.+
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg-------~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~ 360 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKKSYVRYTRG-------TGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLH 360 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcccccccccc-------cCCCcccccccccccCcccCccccccccccccccccccchhh
Confidence 9999999999999999976543211100000 000000000001112223445668899999999999999999
Q ss_pred HhhccCccceEE
Q 015069 273 HFHALCVGTIED 284 (413)
Q Consensus 273 ~F~~~~~G~i~~ 284 (413)
+|..+ |.|..
T Consensus 361 ~f~~~--g~~~~ 370 (578)
T TIGR01648 361 FPRMP--GPIRG 370 (578)
T ss_pred ccccC--ccccC
Confidence 99998 76553
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.7e-27 Score=199.25 Aligned_cols=166 Identities=30% Similarity=0.496 Sum_probs=150.5
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
.....|.|.-||..++++|++.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~ 289 (413)
.+....-. ...|||++||..+|..||.++|++| |.|.--+|+.
T Consensus 119 RPSs~~Ik-----------------------------------~aNLYvSGlPktMtqkelE~iFs~f--GrIItSRiL~ 161 (360)
T KOG0145|consen 119 RPSSDSIK-----------------------------------DANLYVSGLPKTMTQKELEQIFSPF--GRIITSRILV 161 (360)
T ss_pred cCChhhhc-----------------------------------ccceEEecCCccchHHHHHHHHHHh--hhhhhhhhhh
Confidence 77543211 1459999999999999999999999 9998888876
Q ss_pred c------ccEEEEEeCCHHHHHHHHHHhCCCeeCCe--eEEEEecCCCCCC
Q 015069 290 D------KGFGFVRYSTHPEAALAIQMGNARILCGK--PIKCSWGSKPTPP 332 (413)
Q Consensus 290 ~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr--~l~V~~a~~~~~~ 332 (413)
| ||.+||.|+..++|+.|++.|||..-.|+ +|.|+|+..+...
T Consensus 162 dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 162 DQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred hcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 6 89999999999999999999999987664 8999999887543
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=208.96 Aligned_cols=205 Identities=26% Similarity=0.486 Sum_probs=160.7
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++|||+.|.+.+.|+.|+..|.+||+|.+|.+.+|+.|+++|||+||+|+-+|.|..|++.+||..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999632111
Q ss_pred CCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--
Q 015069 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-- 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-- 290 (413)
... .+.. +...+......+|||..++++++++||+.+|+.| |+|.+|.+-++
T Consensus 194 pQA---------QpiI---------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 PQA---------QPII---------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAPT 247 (544)
T ss_pred ccc---------chHH---------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh--cceeeEEeeccCC
Confidence 000 0000 0011122234789999999999999999999999 99999999876
Q ss_pred ----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhh
Q 015069 291 ----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPGTSSTPLPPPPAPHLPGFSATDLAAYERQIALSK 366 (413)
Q Consensus 291 ----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (413)
|||+||+|.+...-..|+..||-+.|+|..|+|..+..+..+- ..|......|.+.+.++++..+.+....
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL-----l~Pat~s~~P~aaaVAaAAaTAKi~A~e 322 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL-----LQPATVSAIPAAAAVAAAAATAKIMAAE 322 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh-----cCCCCcccCchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999997775543221 2233334445444545555555544444
Q ss_pred hh
Q 015069 367 IA 368 (413)
Q Consensus 367 ~~ 368 (413)
++
T Consensus 323 Av 324 (544)
T KOG0124|consen 323 AV 324 (544)
T ss_pred Hh
Confidence 43
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=184.02 Aligned_cols=170 Identities=35% Similarity=0.641 Sum_probs=153.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
....||||+||+..++++-|.++|-+.|+|.+++|.+++ .+||||++|.++|+|.-|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345689999999999999999999999999999999875 5899999999999999999999999999999999988
Q ss_pred ccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeee-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
. ........+.++||+||.++++|.-|.+.|+.||.+.+ -++++|..||.++||+||.|.+.|.+.+|++.++|..+
T Consensus 87 s--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 87 S--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred c--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 7 22333344578999999999999999999999998865 48889999999999999999999999999999999999
Q ss_pred cCeEEEEEEccCCCCCC
Q 015069 200 GNRQIRCNWAAKGATSG 216 (413)
Q Consensus 200 ~g~~i~v~~~~~~~~~~ 216 (413)
.+|++.|.|+.++....
T Consensus 165 ~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCceEEEEEEecCCCc
Confidence 99999999997766544
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=183.05 Aligned_cols=169 Identities=31% Similarity=0.496 Sum_probs=148.1
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
+.....+|||+||+..++++-|.++|-..|+|.++++.+|+.+..++|||||+|.++|+|+-|++-|+...|.||+|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEE-E
Q 015069 208 WAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV-R 286 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v-~ 286 (413)
.+...... ...+.+|||+||.+.+++..|.+.|+.| |.+.+. .
T Consensus 85 kas~~~~n----------------------------------l~vganlfvgNLd~~vDe~~L~dtFsaf--G~l~~~P~ 128 (203)
T KOG0131|consen 85 KASAHQKN----------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAF--GVLISPPK 128 (203)
T ss_pred eccccccc----------------------------------ccccccccccccCcchhHHHHHHHHHhc--cccccCCc
Confidence 87522111 1112569999999999999999999999 777662 4
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q 015069 287 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 332 (413)
Q Consensus 287 ~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~ 332 (413)
++++ +|++||.|++.+.+.+|+..|||..+++++|.|+|+.++...
T Consensus 129 i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 129 IMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 4443 789999999999999999999999999999999999887654
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.4e-25 Score=197.33 Aligned_cols=200 Identities=23% Similarity=0.395 Sum_probs=163.5
Q ss_pred EEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc-------CCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeee
Q 015069 89 FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA-------SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD 161 (413)
Q Consensus 89 fV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~-------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 161 (413)
.-...+.++|.++|.+-.|. .|.|+-... ..........+.|||+.||.++.|+||.-+|++.|.|-+
T Consensus 38 ~~~~~~~eaal~al~E~tgy-----~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e 112 (506)
T KOG0117|consen 38 VAGVQSEEAALKALLERTGY-----TLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE 112 (506)
T ss_pred ccccccHHHHHHHHHHhcCc-----eEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee
Confidence 33345678888888755543 344443221 122233355678999999999999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-cCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccc
Q 015069 162 ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQE 240 (413)
Q Consensus 162 ~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (413)
++++.|+.+|.+||||||.|.+.++|++|++.||+..| .|+.|.|..+..+
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan---------------------------- 164 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN---------------------------- 164 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec----------------------------
Confidence 99999999999999999999999999999999999988 6899988776544
Q ss_pred cCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec-------cccEEEEEeCCHHHHHHHHHHh-C
Q 015069 241 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-------DKGFGFVRYSTHPEAALAIQMG-N 312 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~-------~kg~afV~f~~~~~A~~A~~~l-~ 312 (413)
++|||+|||.+.++|+|++.|++.+ -.|.+|.+.. +||||||+|.+...|..|..+| +
T Consensus 165 -------------~RLFiG~IPK~k~keeIlee~~kVt-eGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 165 -------------CRLFIGNIPKTKKKEEILEEMKKVT-EGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred -------------ceeEeccCCccccHHHHHHHHHhhC-CCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 7799999999999999999999996 4577777653 3899999999999999987755 5
Q ss_pred CC-eeCCeeEEEEecCCCCCCCCC
Q 015069 313 AR-ILCGKPIKCSWGSKPTPPGTS 335 (413)
Q Consensus 313 g~-~l~gr~l~V~~a~~~~~~~~~ 335 (413)
|+ .+-|..+.|.||.+...+...
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded 254 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDED 254 (506)
T ss_pred CceeecCCcceeeccCcccCCChh
Confidence 54 589999999999988766544
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.93 E-value=7.8e-25 Score=194.50 Aligned_cols=281 Identities=18% Similarity=0.232 Sum_probs=202.4
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC--CcccCcceEEEe
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNW 119 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~--~~i~g~~l~v~~ 119 (413)
....+++.|.++|||++++|+||.+++..||.|+.+.+++.++ .||++|.++++|...+..... -.+.|++|.|.|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 3445788999999999999999999999999999988877766 999999999999885543332 346788888887
Q ss_pred cccCCC----------------------------CC-CC--------CCCceEEEcCCCcccChHHHHhhhccCCCeeeE
Q 015069 120 AYASSQ----------------------------RE-DT--------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA 162 (413)
Q Consensus 120 ~~~~~~----------------------------~~-~~--------~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~ 162 (413)
+.-..- .. .. ..-.+++|.++-+.++-|-|..+|++||.|.+|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 652100 00 00 011358899999999999999999999999988
Q ss_pred EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--cCeEEEEEEccCCCCC---CCccccCCCcccccccCCC---
Q 015069 163 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL--GNRQIRCNWAAKGATS---GDEKQSSDSKSVVELTNGI--- 234 (413)
Q Consensus 163 ~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l--~g~~i~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--- 234 (413)
..+.- ...-.|+|+|.+.+.|..|...|+|+.| +.+.|++.|+.-.... ...+......+..+..++.
T Consensus 181 iTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l 256 (492)
T KOG1190|consen 181 ITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSL 256 (492)
T ss_pred EEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccccc
Confidence 76622 2222389999999999999999999987 3478888887432211 1111111111111111000
Q ss_pred --------------------CccccccCCCCCCCCCCc--ccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeeccc
Q 015069 235 --------------------SEDGQEKSNEDAPENNPQ--YTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDK 291 (413)
Q Consensus 235 --------------------~~~~~~~~~~~~~~~~~~--~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~k 291 (413)
.................+ ...|.|.||.. .+|.+.|..+|.-| |+|.+|+|+.+|
T Consensus 257 ~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY--GdVqRVkil~nk 334 (492)
T KOG1190|consen 257 DQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY--GDVQRVKILYNK 334 (492)
T ss_pred chhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh--cceEEEEeeecC
Confidence 000000000110111111 47788888865 88999999999999 999999999885
Q ss_pred -cEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 292 -GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 292 -g~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
-.|+|+|.|...|+-|++.|+|..|.||+|+|.++|...
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 479999999999999999999999999999999998654
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=184.70 Aligned_cols=277 Identities=18% Similarity=0.294 Sum_probs=205.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecc-
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY- 121 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~- 121 (413)
.+--++.|.|+-+.++-+-|..+|++||.|..+.-+...+.-.|+|.|.+.+.|..|...|+|..|.. ..|+|.|++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 34456889999999999999999999999886655544444469999999999999999999988864 466666553
Q ss_pred ---------cCCC--------C----------------------------------------CCCC--CCceEEEcCCCc
Q 015069 122 ---------ASSQ--------R----------------------------------------EDTS--GHFNVFVGDLSP 142 (413)
Q Consensus 122 ---------~~~~--------~----------------------------------------~~~~--~~~~l~v~nl~~ 142 (413)
.++. . .... .+..|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 1100 0 0000 135688888875
Q ss_pred -ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCcccc
Q 015069 143 -EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQS 221 (413)
Q Consensus 143 -~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~ 221 (413)
.+|.+-|..+|+.||.|.+|+|++++. --|+|+|.+...|..|++.|+|..|.|++|+|.++............
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 689999999999999999999998753 46999999999999999999999999999999998654432211111
Q ss_pred CCCcccccccCCCCccccccCC-CCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee-ccccEEEEEeC
Q 015069 222 SDSKSVVELTNGISEDGQEKSN-EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-RDKGFGFVRYS 299 (413)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~-~~kg~afV~f~ 299 (413)
.+. .........+-.....+. .......+++.+|++.|+|.+++||+|++.|...| |.|+..+.. +|+.+|++++.
T Consensus 383 ~d~-glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g-~~vkafkff~kd~kmal~q~~ 460 (492)
T KOG1190|consen 383 EDQ-GLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPG-GQVKAFKFFQKDRKMALPQLE 460 (492)
T ss_pred ccc-cccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCC-ceEEeeeecCCCcceeecccC
Confidence 110 000000000000111111 11223447889999999999999999999999995 566766665 47899999999
Q ss_pred CHHHHHHHHHHhCCCeeCCe-eEEEEecCC
Q 015069 300 THPEAALAIQMGNARILCGK-PIKCSWGSK 328 (413)
Q Consensus 300 ~~~~A~~A~~~l~g~~l~gr-~l~V~~a~~ 328 (413)
+.|+|..|+-.+|.+.+++. .|+|+|.++
T Consensus 461 sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999998654 999999875
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=6.9e-25 Score=186.71 Aligned_cols=150 Identities=23% Similarity=0.420 Sum_probs=138.3
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
.+|||+|||..+++.+|+.+|++||.|.+|.|+ |.||||..++...++.||+.|+|-.|+|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 459999999999999999999999999999999877554
Q ss_pred CCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecccc
Q 015069 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG 292 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg 292 (413)
.+ ...+|+|+||.+.++.++|+..|++| |.|..|+|+++
T Consensus 75 sk-------------------------------------~stkl~vgNis~tctn~ElRa~fe~y--gpviecdivkd-- 113 (346)
T KOG0109|consen 75 SK-------------------------------------ASTKLHVGNISPTCTNQELRAKFEKY--GPVIECDIVKD-- 113 (346)
T ss_pred CC-------------------------------------CccccccCCCCccccCHHHhhhhccc--CCceeeeeecc--
Confidence 21 12679999999999999999999999 99999999988
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 293 FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 293 ~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
|+||.|+..++|..|++.||+++|.|++|+|.+.+++..
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 999999999999999999999999999999999877654
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=189.50 Aligned_cols=276 Identities=17% Similarity=0.204 Sum_probs=196.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec--CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~--~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
.++.--|.+++||+++|++||++||+.++ |+.+.+.+. +..|-|||+|.++|++++|++ ++...+..|.|.|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34566799999999999999999999986 777777775 457899999999999999997 88889999999997664
Q ss_pred cCC--------CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeee-EEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 015069 122 ASS--------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 122 ~~~--------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (413)
... ..........|.+++||+.|+++||.++|+..-.|.+ +.++.| ..+++.|.|||.|++.+.|+.|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 332 1222235668999999999999999999998876665 445555 457799999999999999999998
Q ss_pred HhCCceecCeEEEEEEccCCCCCCCc------c--ccCCC-----ccc-----------------ccc------------
Q 015069 193 DLNGKWLGNRQIRCNWAAKGATSGDE------K--QSSDS-----KSV-----------------VEL------------ 230 (413)
Q Consensus 193 ~l~g~~l~g~~i~v~~~~~~~~~~~~------~--~~~~~-----~~~-----------------~~~------------ 230 (413)
-+...|+.|.|.|..+......... . ..+.. ... ...
T Consensus 164 -rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 -RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred -HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 5667788888888665321110000 0 00000 000 000
Q ss_pred cC--CC----C----------ccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee--cc--
Q 015069 231 TN--GI----S----------EDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RD-- 290 (413)
Q Consensus 231 ~~--~~----~----------~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~--~~-- 290 (413)
.. .. . ...............+....++.++||+..++.++.++|+.. ....|++. .+
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl---~p~~v~i~ig~dGr 319 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL---NPYRVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC---CceeEEEEeCCCCc
Confidence 00 00 0 000000000011122233778999999999999999999987 33355554 33
Q ss_pred -ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 291 -KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 291 -kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.|-|+|+|.+.++|..|+.. ++..+..+.|.+..-.
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 78999999999999999987 8888999999886653
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.3e-23 Score=209.05 Aligned_cols=187 Identities=17% Similarity=0.289 Sum_probs=137.0
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccC------------CCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVF------------PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~------------G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
.....++|||+|||+.+++++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..|+. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34456789999999999999999999864 23333333 4568999999999999999996 99
Q ss_pred CceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhh
Q 015069 196 GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH 275 (413)
Q Consensus 196 g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~ 275 (413)
|..+.|+.|.|................... ........... ...........++|||+|||..+|+++|+++|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 317 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQK-----NPDDNAKNVEK-LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE 317 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCC-----CCccccccccc-ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 999999999996543222111000000000 00000000000 001111223457899999999999999999999
Q ss_pred ccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 276 ALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 276 ~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
.| |.|..+.++++ +|||||+|.+.++|..|++.|||..|+|+.|+|.++...
T Consensus 318 ~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 318 SF--GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred hc--CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99 99999999764 799999999999999999999999999999999998654
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=185.39 Aligned_cols=148 Identities=26% Similarity=0.473 Sum_probs=138.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCCC
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED 128 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~ 128 (413)
+|||+|||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|..|+..|+|..|+|..|.|+-++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc-----
Confidence 6999999999999999999999999999999764 9999999999999999999999999999999988766
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
...+.+|+|+||.+.++.+||+..|++||+|.++.|++ +|+||.|...++|..|++.|+++.+.|+++.|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34567899999999999999999999999999999994 5999999999999999999999999999999998
Q ss_pred ccCCC
Q 015069 209 AAKGA 213 (413)
Q Consensus 209 ~~~~~ 213 (413)
+..+-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 86543
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.7e-23 Score=174.85 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=160.6
Q ss_pred CcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 015069 112 GQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAI 191 (413)
Q Consensus 112 g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~ 191 (413)
+|.|.|+.+.... .....++|||+.|.+.-+|||++.+|..||+|+++.+++. ..|.+|||+||.|.+..+|..||
T Consensus 2 nrpiqvkpadses---rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSES---RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCcccccccccc---CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 5677787664433 2336678999999999999999999999999999999987 56899999999999999999999
Q ss_pred HHhCCce-ecC--eEEEEEEccCCCCCCCccccC----------------------------------------------
Q 015069 192 NDLNGKW-LGN--RQIRCNWAAKGATSGDEKQSS---------------------------------------------- 222 (413)
Q Consensus 192 ~~l~g~~-l~g--~~i~v~~~~~~~~~~~~~~~~---------------------------------------------- 222 (413)
..|+|.. +-| ..|.|+|++..++...++...
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999865 433 678899986654332000000
Q ss_pred -----------------CCccccccc-------------CCCCcc-------------------------------cc--
Q 015069 223 -----------------DSKSVVELT-------------NGISED-------------------------------GQ-- 239 (413)
Q Consensus 223 -----------------~~~~~~~~~-------------~~~~~~-------------------------------~~-- 239 (413)
...+..... .+.+.. ..
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 000000000 000000 00
Q ss_pred ----------------------------------ccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEE
Q 015069 240 ----------------------------------EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 285 (413)
Q Consensus 240 ----------------------------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v 285 (413)
..........++..++|||-.||....+.||.+.|-+| |.|.+.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF--GhivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF--GHIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc--cceeee
Confidence 00000011355778999999999999999999999999 999999
Q ss_pred Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 286 RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 286 ~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
++.-| |.|+||.|+++.+|+.||..|||+.|+-++|+|.+.+++..
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 98766 78999999999999999999999999999999999887764
No 42
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.89 E-value=1.1e-20 Score=166.35 Aligned_cols=280 Identities=16% Similarity=0.142 Sum_probs=208.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHH--hCCCcccCcceEEEec
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT--LNGRHIFGQPIKVNWA 120 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~--l~~~~i~g~~l~v~~~ 120 (413)
....+..|.|++|-..++|.||.+.++.||+|..|.++..+ ..|+|+|++.+.|+.++.. -+...+.|+.-.+.|+
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 34556779999999999999999999999999988887654 4899999999999999853 3345678888888888
Q ss_pred ccCCCCCCCCCC----ce--EEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015069 121 YASSQREDTSGH----FN--VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL 194 (413)
Q Consensus 121 ~~~~~~~~~~~~----~~--l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l 194 (413)
..+...+...++ .. +.|-|--+.+|.+-|..++...|.|..|.|++. + --.|.|||++.+.|++|.+.|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhc
Confidence 766544443332 22 334455578999999999999999999999843 2 336999999999999999999
Q ss_pred CCcee--cCeEEEEEEccCCCCCCCcc---ccCCCcc----------------cc---------ccc---CCCCcc----
Q 015069 195 NGKWL--GNRQIRCNWAAKGATSGDEK---QSSDSKS----------------VV---------ELT---NGISED---- 237 (413)
Q Consensus 195 ~g~~l--~g~~i~v~~~~~~~~~~~~~---~~~~~~~----------------~~---------~~~---~~~~~~---- 237 (413)
||..| +.++|+|+|+.+....-... .+....+ .. ... .+....
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99876 56899999996653211000 0000000 00 000 000000
Q ss_pred ------c------cccCCCCCCCCCCcccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHH
Q 015069 238 ------G------QEKSNEDAPENNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPE 303 (413)
Q Consensus 238 ------~------~~~~~~~~~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~ 303 (413)
. ........+....+.+.+.|.+|+. .++.+.|..+|.-| |.|.+|++++. .|.|+|++.|..+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY--GNV~rvkFmkTk~gtamVemgd~~a 337 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY--GNVERVKFMKTKPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc--CceeeEEEeecccceeEEEcCcHHH
Confidence 0 0000111223455678999999997 67899999999999 99999999988 5899999999999
Q ss_pred HHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 304 AALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 304 A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
.++|+..||+..+.|.+|.|.+++...-
T Consensus 338 ver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 338 VERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred HHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999876553
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=3.7e-22 Score=189.59 Aligned_cols=165 Identities=24% Similarity=0.419 Sum_probs=145.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-------CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-------~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
+|||.||+++++.++|...|...|.|.++.|...+. .|||||+|.++++|..|++.|+|..+.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998887653 3999999999999999999999999999999999998
Q ss_pred cCC------CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 122 ASS------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 122 ~~~------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
.+. ........++|.|+|||+..+-.+++.+|..||.|.+++|..-...+-++|||||+|-+..+|.+|++.|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 211 11122224689999999999999999999999999999998665556789999999999999999999999
Q ss_pred CceecCeEEEEEEccCCC
Q 015069 196 GKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 196 g~~l~g~~i~v~~~~~~~ 213 (413)
.+.|.||.|.++|+....
T Consensus 677 STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ccceechhhheehhccch
Confidence 999999999999996543
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.8e-22 Score=166.41 Aligned_cols=177 Identities=26% Similarity=0.444 Sum_probs=152.5
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCc-ccC-
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRH-IFG- 112 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~-i~g- 112 (413)
.+..++..+.|+|||+-|...-.|+|++.+|..||+|++|.+.+.. ++|||||+|.+.-+|..||..|+|.. +-|
T Consensus 10 adsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 10 ADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred cccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 3444445567899999999999999999999999999999999864 58999999999999999999999965 334
Q ss_pred -cceEEEecccCCC------------------------------------------------------------------
Q 015069 113 -QPIKVNWAYASSQ------------------------------------------------------------------ 125 (413)
Q Consensus 113 -~~l~v~~~~~~~~------------------------------------------------------------------ 125 (413)
..|-|+++..+++
T Consensus 90 SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~ 169 (371)
T KOG0146|consen 90 SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAAL 169 (371)
T ss_pred ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHH
Confidence 5778887751100
Q ss_pred --------------------------------------------------------------------------------
Q 015069 126 -------------------------------------------------------------------------------- 125 (413)
Q Consensus 126 -------------------------------------------------------------------------------- 125 (413)
T Consensus 170 ~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g 249 (371)
T KOG0146|consen 170 NANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAG 249 (371)
T ss_pred hhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhh
Confidence
Q ss_pred -----------------------------CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccE
Q 015069 126 -----------------------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (413)
Q Consensus 126 -----------------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~ 176 (413)
.++.++.++|||..||.+..+.||..+|-.||.|.+.+++.|+.|+.+|.|
T Consensus 250 ~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 250 VQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccce
Confidence 133445677999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCC
Q 015069 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (413)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~ 214 (413)
+||.|++..+|..||..+||..|+=++|+|...+++..
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999999999999999988766543
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=6.3e-22 Score=183.14 Aligned_cols=179 Identities=25% Similarity=0.378 Sum_probs=149.3
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..+++|+.-|+...++.||.++|+.+|.|.+++++.|+.+++++|.+||+|.+.+....||. |.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 34679999999999999999999999999999999999999999999999999999999997 99999999999998764
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
......... ...........+...|||+||++++++++|+.+|++| |.|..|.+.+|
T Consensus 257 aeknr~a~~---------------------s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf--g~Ie~v~l~~d 313 (549)
T KOG0147|consen 257 AEKNRAANA---------------------SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF--GKIENVQLTKD 313 (549)
T ss_pred HHHHHHHhc---------------------cccccccccccchhhhhhcccccCchHHHHhhhccCc--ccceeeeeccc
Confidence 332210000 0000111112233449999999999999999999999 99999999877
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPPG 333 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~~ 333 (413)
+||+||+|.+.++|.+|+..|||.+|.||.|+|..........
T Consensus 314 ~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 314 SETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred cccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 8999999999999999999999999999999998877655443
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.6e-21 Score=180.71 Aligned_cols=268 Identities=21% Similarity=0.334 Sum_probs=205.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhcc-----------C-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSST-----------G-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI 110 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i 110 (413)
.....+.++|+++|..++++....+|..- | .+..|.+.. .+++||++|.+.++|..++. +++..+
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhhc-ccchhh
Confidence 34566889999999999999999999863 3 366666644 45699999999999999996 899999
Q ss_pred cCcceEEEecccCCC--------------------CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCC
Q 015069 111 FGQPIKVNWAYASSQ--------------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT 170 (413)
Q Consensus 111 ~g~~l~v~~~~~~~~--------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~ 170 (413)
.|..+++........ ........+++|++||..++++.++++...||++....++.|..+
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 999888875443211 112233457999999999999999999999999999999999999
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCC
Q 015069 171 GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENN 250 (413)
Q Consensus 171 ~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (413)
|.++||||.+|.+......|+..|||..++++++.|..+.............. .. ..............
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~-~~----------~~~~i~~~~~q~~g 396 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNIS-QS----------QVPGIPLLMTQMAG 396 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcc-cc----------ccccchhhhcccCC
Confidence 99999999999999999999999999999999999998866544332221100 00 00001111122334
Q ss_pred CcccEEEEecCC--CCC-CH-------HHHHHHhhccCccceEEEEeecc---------ccEEEEEeCCHHHHHHHHHHh
Q 015069 251 PQYTTVYVGNLS--SEV-TS-------VDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 251 ~~~~~l~V~nLp--~~~-t~-------e~L~~~F~~~~~G~i~~v~~~~~---------kg~afV~f~~~~~A~~A~~~l 311 (413)
.+...|.+.|+= ..+ .+ |+++.-+.+| |.|.+|.+.++ -|..||+|.+.+++++|++.|
T Consensus 397 ~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~--g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L 474 (500)
T KOG0120|consen 397 IPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF--GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL 474 (500)
T ss_pred CcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc--CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc
Confidence 445556665541 111 12 4566677889 99999999876 477899999999999999999
Q ss_pred CCCeeCCeeEEEEec
Q 015069 312 NARILCGKPIKCSWG 326 (413)
Q Consensus 312 ~g~~l~gr~l~V~~a 326 (413)
+|+.|.||.|...|-
T Consensus 475 ~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 475 TGRKFANRTVVASYY 489 (500)
T ss_pred cCceeCCcEEEEEec
Confidence 999999999998875
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=2.2e-21 Score=173.94 Aligned_cols=170 Identities=20% Similarity=0.419 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
+.++|||++|.++++++.|+++|.+||+|.+|.+++++ .++|+||+|.+++....++. ...+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999975 47899999999999999985 67788999999999998
Q ss_pred cCCCCCCCC---CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 122 ASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 122 ~~~~~~~~~---~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
+........ ...+|||++||.+++++++++.|..||.|.++.++.|..+.+++||+||.|.+++.+.+++. ...+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 776544333 36789999999999999999999999999999999999999999999999999999999998 78889
Q ss_pred ecCeEEEEEEccCCCCCCC
Q 015069 199 LGNRQIRCNWAAKGATSGD 217 (413)
Q Consensus 199 l~g~~i~v~~~~~~~~~~~ 217 (413)
|.|+.+.|..+.++.....
T Consensus 163 ~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecCceeeEeeccchhhccc
Confidence 9999999999988765543
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=1.5e-18 Score=152.99 Aligned_cols=271 Identities=15% Similarity=0.155 Sum_probs=197.8
Q ss_pred EEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecccCCCC--
Q 015069 51 YVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASSQR-- 126 (413)
Q Consensus 51 ~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~~~~~~-- 126 (413)
-|-|--+.+|.+-|..++...|.|..|.|++. +.-.|.|+|++.+.|++|.+.|||..|.. .+|+|+|+++.+..
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeee
Confidence 34465667999999999999999999988765 55689999999999999999999988763 68999988743100
Q ss_pred -----------------------------------------------------------------------------CCC
Q 015069 127 -----------------------------------------------------------------------------EDT 129 (413)
Q Consensus 127 -----------------------------------------------------------------------------~~~ 129 (413)
...
T Consensus 205 knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~ 284 (494)
T KOG1456|consen 205 KNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGG 284 (494)
T ss_pred ecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCC
Confidence 000
Q ss_pred CCCceEEEcCCCc-ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 130 SGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 130 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..+..++|.+|.. .++-+.|.++|.-||+|+.|+.++.+ .|.|.|++.+....++|+..|++..+.|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 1123489999986 46778999999999999999999664 57899999999999999999999999999999987
Q ss_pred ccCCCCCCCcc-ccCCCcc-cccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEE
Q 015069 209 AAKGATSGDEK-QSSDSKS-VVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 286 (413)
Q Consensus 209 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~ 286 (413)
+.......... ...+..+ .......-...-............+++++|+.-|.|..+|||.|.++|.... ....+++
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~-v~~~svk 438 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD-VPPTSVK 438 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-CCcceEE
Confidence 75443222100 0000000 0000000000000111122334557789999999999999999999999874 3466777
Q ss_pred eecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe------eEEEEecCC
Q 015069 287 VQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK------PIKCSWGSK 328 (413)
Q Consensus 287 ~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr------~l~V~~a~~ 328 (413)
+... ...++++|++.++|..|+..+|...+.+. .|++.|+++
T Consensus 439 vFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 439 VFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 7654 24579999999999999999999988663 456666544
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.9e-20 Score=148.23 Aligned_cols=150 Identities=22% Similarity=0.358 Sum_probs=130.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
.+.+++|||+|||.++.|.||.++|.+||.|.+|.+..... ..||||+|+++.||..||.-.+|..+.|..|+|++...
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35678999999999999999999999999999998865543 67999999999999999999999999999999999864
Q ss_pred CCCC-----------------------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEE
Q 015069 123 SSQR-----------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFV 179 (413)
Q Consensus 123 ~~~~-----------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV 179 (413)
-... .......+|.|++||++-+|+||++.+.+-|.|-...+.+| |.+.|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV 155 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVV 155 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceee
Confidence 4211 11223467999999999999999999999999988888866 47999
Q ss_pred EeCCHHHHHHHHHHhCCceec
Q 015069 180 SFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 180 ~f~~~~~A~~a~~~l~g~~l~ 200 (413)
+|...|+.+-|+..|+...+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeehhhHHHHHHhhcccccc
Confidence 999999999999999877653
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=7.9e-19 Score=140.10 Aligned_cols=174 Identities=21% Similarity=0.329 Sum_probs=136.6
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
..+++|||+|||.++.+.||.++|.+||.|.+|.+... .....||||+|++..+|+.||..-+|..++|..|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45678999999999999999999999999999988633 345689999999999999999999999999999999998
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~ 289 (413)
..........-. ..+....+........+........|.|++||.+-+|++|++++.+. |.|....+.+
T Consensus 81 rggr~s~~~~G~---------y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea--GdvCfadv~r 149 (241)
T KOG0105|consen 81 RGGRSSSDRRGS---------YSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA--GDVCFADVQR 149 (241)
T ss_pred cCCCcccccccc---------cCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh--CCeeeeeeec
Confidence 766422211100 00001111111122223333445789999999999999999999999 9999999988
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 290 DKGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 290 ~kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
| |++.|+|...|+-+-|+..|+...+..
T Consensus 150 D-g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 150 D-GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred c-cceeeeeeehhhHHHHHHhhccccccC
Confidence 8 699999999999999999998886643
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.83 E-value=1.5e-20 Score=168.62 Aligned_cols=168 Identities=28% Similarity=0.452 Sum_probs=146.6
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
...+|||++|+++++++.|++.|..||.|.++.+++|+.+++++||+||+|.+.+...+++. .....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999999999999999999999999999987 55678999999988876
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
++........ ....++|||++||.++++++++++|++| |.|..+.++.|
T Consensus 84 ~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQF--GKVADVVIMYD 132 (311)
T ss_pred Cccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhcc--ceeEeeEEeec
Confidence 6544322211 0134789999999999999999999999 99999988866
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
+||+||.|.+++.+.+++.. +-+.|.|+.+.|..|.++..
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhh
Confidence 79999999999999999864 88899999999999977653
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=3.2e-19 Score=148.30 Aligned_cols=192 Identities=20% Similarity=0.277 Sum_probs=148.6
Q ss_pred CCceEEEcCCCcccChHHHHh----hhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 131 GHFNVFVGDLSPEVTDATLFA----CFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
+..+|||.||+..+..++|+. +|+.||.|.+|..+ .+.+.||-|||.|.+.+.|..|++.|+|..+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999988 99999999999988 56799999999999999999999999999999999999
Q ss_pred EEccCCCCCCCccccCC----Cc----ccc---c--ccCCCCc--cccccCCCCCCCCCCcccEEEEecCCCCCCHHHHH
Q 015069 207 NWAAKGATSGDEKQSSD----SK----SVV---E--LTNGISE--DGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH 271 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~----~~----~~~---~--~~~~~~~--~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~ 271 (413)
.|+..+........... .. ... . ...+... .....+........++...+++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99976654322211000 00 000 0 0000000 00000000013346778899999999999999999
Q ss_pred HHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEEecC
Q 015069 272 RHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGS 327 (413)
Q Consensus 272 ~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~-gr~l~V~~a~ 327 (413)
.+|+.| ...+.++++.. ++.|||+|.+...|..|...+.|..|. ...+.|.+++
T Consensus 165 ~lf~qf--~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQF--PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhC--cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999 89999999986 789999999999999999999999886 8889998875
No 53
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=160.32 Aligned_cols=276 Identities=17% Similarity=0.153 Sum_probs=188.1
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc----CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~----G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
..++..|..++||+..++.+|..||+.. |.+.-|.....+..|+|.|.|.+.|.-+.|++ .+.+.+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 4456678899999999999999999953 22332333334567899999999999999997 788888999999987
Q ss_pred cccCCCC-------------CCCCCCceEEEcCCCcccChHHHHhhhccC----CCeeeEEEeecCCCCCcccEEEEEeC
Q 015069 120 AYASSQR-------------EDTSGHFNVFVGDLSPEVTDATLFACFSVF----PTCSDARVMWDQKTGRSRGFGFVSFR 182 (413)
Q Consensus 120 ~~~~~~~-------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~v~~~~i~~d~~~~~~~g~afV~f~ 182 (413)
+....-- ....+---|.+++||+++++.|+.++|... |..+.+..+ .+.+|+..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV-~rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV-TRPDGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE-ECCCCCcccceEEEec
Confidence 7643210 111223458899999999999999999643 234455444 4457999999999999
Q ss_pred CHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCC
Q 015069 183 NQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLS 262 (413)
Q Consensus 183 ~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 262 (413)
.+++|..|+. -+...++-|.|.+..+....-.. .-......+... +.............-.......+|.+++||
T Consensus 215 ~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqq-vlnr~~s~pLi~---~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 215 CEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQ-VLNREVSEPLIP---GLTSPLLPGGPARLVPPTRSKDCVRLRGLP 289 (508)
T ss_pred CHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHH-HHHhhccccccC---CCCCCCCCCCccccCCCCCCCCeeEecCCC
Confidence 9999999998 35555666666553332110000 000000001111 000000010011111222336789999999
Q ss_pred CCCCHHHHHHHhhccCccceEE--EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 263 SEVTSVDLHRHFHALCVGTIED--VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 263 ~~~t~e~L~~~F~~~~~G~i~~--v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
+..+.|+|.+||..|. -.|.. |++.-+ .|.|||+|.+.+.|..|....|.+...+|.|+|--+.
T Consensus 290 y~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 9999999999999983 23444 566543 6899999999999999999988888889999997664
No 54
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=7.6e-18 Score=151.38 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=145.9
Q ss_pred CCceEEEcCCCcccChHHHHhhh-ccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
..+.+||+|||+++.|.+|+++| ++.|+|+.|.++.| .+|++||||.|||+++|.+++|++.|+...+.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34569999999999999999999 57899999999999 68999999999999999999999999999999999999765
Q ss_pred cCCCCCCCccc------------------------------------cCCCccccc------ccCCCCccc--------c
Q 015069 210 AKGATSGDEKQ------------------------------------SSDSKSVVE------LTNGISEDG--------Q 239 (413)
Q Consensus 210 ~~~~~~~~~~~------------------------------------~~~~~~~~~------~~~~~~~~~--------~ 239 (413)
.........+. ..+...... +...+.... .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 43211100000 000000000 000000000 0
Q ss_pred ccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCC
Q 015069 240 EKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR 314 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~ 314 (413)
........-..|-..++||.||.+.+....|++.|.-. |.|+.+.+.-| +|+|.++|+++-+|..|+..|++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA--Gkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA--GKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccc--eeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00000111234556789999999999999999999999 99999988655 799999999999999999999998
Q ss_pred eeCCeeEEEEecCCC
Q 015069 315 ILCGKPIKCSWGSKP 329 (413)
Q Consensus 315 ~l~gr~l~V~~a~~~ 329 (413)
-+.+++..+++.+-+
T Consensus 280 g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRIP 294 (608)
T ss_pred CCccccceeeccccc
Confidence 888899888886543
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=3.9e-18 Score=141.87 Aligned_cols=160 Identities=21% Similarity=0.399 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHH----HHhccCCcceEEEEec-CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 45 STCRSVYVGNIHPQVTNALLQE----VFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~----~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
.++.||||.||+..+..++|+. +|++||.|.+|...+. +.+|.|||.|.+.+.|..|+..|+|..+.|++++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3455999999999999999998 9999999999988865 5699999999999999999999999999999999999
Q ss_pred cccCCCC-----------------------------------------------CCCCCCceEEEcCCCcccChHHHHhh
Q 015069 120 AYASSQR-----------------------------------------------EDTSGHFNVFVGDLSPEVTDATLFAC 152 (413)
Q Consensus 120 ~~~~~~~-----------------------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~ 152 (413)
++.+... ....++..+|+.|||..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 9754210 01234567999999999999999999
Q ss_pred hccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-CeEEEEEEc
Q 015069 153 FSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWA 209 (413)
Q Consensus 153 f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-g~~i~v~~~ 209 (413)
|..|.-...++++..+ ++.|||+|.+...+..|...+.+..+. ...+.+.++
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999999999998442 678999999999999999999998876 667777665
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.75 E-value=3.8e-17 Score=134.52 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-----CceEEEEEcCHHHHHHHHHHhCCCccc---Cc
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVTLNGRHIF---GQ 113 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-----~g~afV~F~~~~~A~~A~~~l~~~~i~---g~ 113 (413)
......|||||.+||.++...||..+|..|-..+.+.+..... +.+|||.|.+..+|..|+..|||..|+ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3445579999999999999999999999997777776654322 369999999999999999999999987 78
Q ss_pred ceEEEecccCCCCCCCCCCc------eEEEcCCCcccC-hHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHH
Q 015069 114 PIKVNWAYASSQREDTSGHF------NVFVGDLSPEVT-DATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQED 186 (413)
Q Consensus 114 ~l~v~~~~~~~~~~~~~~~~------~l~v~nl~~~~~-~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~ 186 (413)
.|++++++.+.+........ -+-+.+-.+... +.+. ..+....+
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~----------qhd~~l~~------------------- 159 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADD----------QHDEGLSD------------------- 159 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchh----------hccccccC-------------------
Confidence 99999987665433222111 010100000000 0000 00000000
Q ss_pred HHHHHHHhCCceecCeEEEEEEc---cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCC
Q 015069 187 AQSAINDLNGKWLGNRQIRCNWA---AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSS 263 (413)
Q Consensus 187 A~~a~~~l~g~~l~g~~i~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 263 (413)
+..+... ..-.................... . ....... .........+.+|||.||..
T Consensus 160 ----------------p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~-a-~a~l~ks-~q~~~~~~acstlfianl~~ 220 (284)
T KOG1457|consen 160 ----------------PDELQEPGNADALKENDTTKSEALSAPDSKAPS-A-NAHLEKS-SQGGSGARACSTLFIANLGP 220 (284)
T ss_pred ----------------ccccCCccccccCCCccccchhhhhhhhhcCCc-c-cchhhhh-hcccccchhhhhHhhhccCC
Confidence 0000000 00000000000000000000000 0 0000001 11113445678999999999
Q ss_pred CCCHHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCee
Q 015069 264 EVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARIL 316 (413)
Q Consensus 264 ~~t~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l 316 (413)
++||++|+.+|+.| .....++|... -..||++|.+.+.|..||..|.|..|
T Consensus 221 ~~~ed~l~~~~~~~--~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 221 NCTEDELKQLLSRY--PGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred CCCHHHHHHHHHhC--CCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 99999999999999 66666666544 45789999999999999999999866
No 57
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=2.4e-17 Score=150.96 Aligned_cols=167 Identities=21% Similarity=0.305 Sum_probs=128.5
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
....-|.+++||+++|++||.++|+.++ |+++. ..+.+|+..|.|||+|.++|++++|++ .+...+..|.|.|-.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~--~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLE--IPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEE--EeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3445689999999999999999999985 55544 445679999999999999999999999 6888899999999776
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEE-EEee
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQ 288 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~-v~~~ 288 (413)
.........+.. .+........|.+++||+.||++||.+||+.. -.|.. +.++
T Consensus 84 ~~~e~d~~~~~~------------------------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~ 137 (510)
T KOG4211|consen 84 GGAEADWVMRPG------------------------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLP 137 (510)
T ss_pred CCccccccccCC------------------------CCCCCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeee
Confidence 544332111100 00000223679999999999999999999987 34444 3333
Q ss_pred cc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 289 RD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 289 ~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.+ .|.|||+|++.+.|++|+.. |...|+.|.|.|-.+.
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 33 68999999999999999987 8889999999997553
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=4.2e-17 Score=132.27 Aligned_cols=85 Identities=41% Similarity=0.622 Sum_probs=79.8
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
...+++|||+|||++++|++|+++|++||.|.+++++.|+.+++++|||||+|.+.++|+.|++.+++..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 015069 209 AAKGA 213 (413)
Q Consensus 209 ~~~~~ 213 (413)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87553
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=3.3e-16 Score=127.04 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
...++|||+|||+.+|+++|+++|++| |.|.+++++.+ +|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHF--GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344789999999999999999999999 99999999865 7999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|++.+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9986554
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.70 E-value=6.4e-16 Score=135.52 Aligned_cols=194 Identities=19% Similarity=0.244 Sum_probs=140.0
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCee--------eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~ 203 (413)
+..|||+|||.++|-+++.++|+++|.|. .|++.++ ..|..+|-|.+.|-..+++..|+..|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45699999999999999999999999874 3677777 45999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCccccCC---CcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCC----CCC-------HHH
Q 015069 204 IRCNWAAKGATSGDEKQSSD---SKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSS----EVT-------SVD 269 (413)
Q Consensus 204 i~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~e~ 269 (413)
|+|+.+.-............ ..................+....+......++|.+.||-. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99988743322211111000 0000000000000000011112233334458899999832 223 467
Q ss_pred HHHHhhccCccceEEEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 270 LHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 270 L~~~F~~~~~G~i~~v~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
|++-+++| |.|.+|.|. ...|.+.|.|.+.++|..|++.|+|+.|+||.|.-+.-..
T Consensus 293 l~eec~K~--G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKF--GQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHh--CCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 77889999 999999998 4489999999999999999999999999999998876543
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.9e-17 Score=138.31 Aligned_cols=150 Identities=29% Similarity=0.479 Sum_probs=129.5
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCC--
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ-- 125 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~-- 125 (413)
..|||++||+.+.+.+|..||..||.+.+|.+ ..+|+||+|.+..+|..|+..|++..|.|..+.|+|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 36999999999999999999999999998877 557999999999999999999999999998899999874211
Q ss_pred ---------------CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 015069 126 ---------------REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSA 190 (413)
Q Consensus 126 ---------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a 190 (413)
.........+.|.+++..+.+.+|.+.|..+|.+....+ .++++||+|.+.+++.+|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 011233467999999999999999999999999854433 367899999999999999
Q ss_pred HHHhCCceecCeEEEEEEc
Q 015069 191 INDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 191 ~~~l~g~~l~g~~i~v~~~ 209 (413)
++.+++..+.++.|.+.+.
T Consensus 150 ~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred chhccchhhcCceeeeccc
Confidence 9999999999999999444
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=8.9e-17 Score=135.40 Aligned_cols=165 Identities=26% Similarity=0.420 Sum_probs=132.4
Q ss_pred eEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 015069 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 134 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~ 213 (413)
.+||++||+.+.+.+|..+|..||.+.++.+. -||+||+|.+..+|..|+..+++..|.|-.+.|+|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999999999998887 4689999999999999999999999999888898886432
Q ss_pred CCCCccccCCCcccccccCCCCcccccc-CCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecccc
Q 015069 214 TSGDEKQSSDSKSVVELTNGISEDGQEK-SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG 292 (413)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg 292 (413)
... +.+..+... ............+.++|.|+...+.+.+|.++|..+ |.+....+ .++
T Consensus 75 ~~~----------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~~~~~~--~~~ 134 (216)
T KOG0106|consen 75 RGR----------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEVTYVDA--RRN 134 (216)
T ss_pred ccc----------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCCchhhh--hcc
Confidence 211 000000000 011112223334779999999999999999999999 99966655 567
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 293 FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 293 ~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
++||+|.+.++|.+|+..|++..+.|++|.+...
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9999999999999999999999999999999443
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.9e-14 Score=126.35 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=132.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcc--------eEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
..-++.|||.|||.++|.+++.++|+++|.|. .|++.++.. +|-|++.|--.+++..|++-|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45567799999999999999999999999654 466666543 7889999999999999999999999999
Q ss_pred cceEEEecccCC-----------------------------------CCCCCCCCceEEEcCCC----cccC-------h
Q 015069 113 QPIKVNWAYASS-----------------------------------QREDTSGHFNVFVGDLS----PEVT-------D 146 (413)
Q Consensus 113 ~~l~v~~~~~~~-----------------------------------~~~~~~~~~~l~v~nl~----~~~~-------~ 146 (413)
+.|+|+.+.-.. ........++|.+.|+= ...+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999775110 01112335678898882 1222 3
Q ss_pred HHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 147 ~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
+||++-+.+||.|.++.|. | ..+.|.+-|.|.+.++|..||+.|+|+.++||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 5677778999999998886 3 356889999999999999999999999999999988765443
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.5e-15 Score=125.81 Aligned_cols=84 Identities=32% Similarity=0.514 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
...+.+|.|+||+.+++|++|.++|.+||.|..+.+.+|+.||.+||||||.|.+.++|.+||+.|+|.-+++--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015069 209 AAKG 212 (413)
Q Consensus 209 ~~~~ 212 (413)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9764
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.5e-14 Score=103.07 Aligned_cols=70 Identities=41% Similarity=0.798 Sum_probs=67.3
Q ss_pred EEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 135 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|..|++.++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7889999999999999999999999999999999885
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=115.88 Aligned_cols=78 Identities=31% Similarity=0.533 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
-.++|||+||+..+++.||...|..||+|..|+|-. ...|||||+|+++.||..|+..|+|+.|+|..|.|+.+....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 368899999999999999999999999999998877 456999999999999999999999999999999999987654
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.2e-14 Score=126.76 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...++|+|.|||+...|-||+.+|.+||.|.+|.|+.+. ++||+||.|++.+||++|-++|||..+.||+|+|+.+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 445789999999999999999999999999999999864 699999999999999999999999999999999999876
Q ss_pred C
Q 015069 123 S 123 (413)
Q Consensus 123 ~ 123 (413)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=3.6e-14 Score=122.93 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
.++|||+|||+.+|+++|+++|+.| |.|++|+|.++ +|||||+|.+.++|..|+. |||..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~--G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS--GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 3789999999999999999999999 99999999876 6999999999999999995 8999999999999998765
Q ss_pred CC
Q 015069 330 TP 331 (413)
Q Consensus 330 ~~ 331 (413)
..
T Consensus 81 ~~ 82 (260)
T PLN03120 81 QL 82 (260)
T ss_pred CC
Confidence 44
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.9e-14 Score=102.41 Aligned_cols=65 Identities=35% Similarity=0.709 Sum_probs=62.4
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
|||+|||.++|+++|+++|+.| |.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF--GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT--STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh--hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999 99999999884 79999999999999999999999999999986
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.1e-14 Score=124.13 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=73.6
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.....++|+|+|||+...|-||+.+|++| |+|.+|.|+-+ |||+||+|++.+||++|.+.|||..+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kf--G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKF--GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhh--CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33445889999999999999999999999 99999999854 8999999999999999999999999999999999
Q ss_pred ecCCCC
Q 015069 325 WGSKPT 330 (413)
Q Consensus 325 ~a~~~~ 330 (413)
.++.+.
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 987654
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.9e-14 Score=101.89 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-CceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
.+.+-....++-|||+|||+++|.++..++|.+||+|..|+|-..+. +|.|||.|++..+|++|++.|+|..+.++.+.
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34444556678899999999999999999999999999999977664 89999999999999999999999999999999
Q ss_pred EEecccC
Q 015069 117 VNWAYAS 123 (413)
Q Consensus 117 v~~~~~~ 123 (413)
|.+..+.
T Consensus 89 vlyyq~~ 95 (124)
T KOG0114|consen 89 VLYYQPE 95 (124)
T ss_pred EEecCHH
Confidence 9987654
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.5e-14 Score=122.36 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=71.3
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.++|||+|||+.++|++|+++|+.||.|.+|.|..++ .+|||||+|.++++|..|+. |+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5799999999999999999999999999999999887 47999999999999999996 9999999999999997643
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=121.28 Aligned_cols=79 Identities=39% Similarity=0.633 Sum_probs=72.5
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
.+|||+||++.+..++|++.|+.||+|++..|+.|+.+|++|||+||+|++.++|.+|++. ..-.|+||+..|+++.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhhc
Confidence 5799999999999999999999999999999999999999999999999999999999983 345689999988887653
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=1.9e-14 Score=131.70 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCH--HHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR--RSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~--~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
...+|||+||+++++++||...|..||.|.+|.|++...+|||||+|.+. .++.+|+..|||..|+|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 45689999999999999999999999999999999888899999999987 7899999999999999999999998754
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=8.1e-14 Score=99.15 Aligned_cols=70 Identities=39% Similarity=0.705 Sum_probs=64.9
Q ss_pred EEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 135 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
|+|+|||+++++++|+++|+.+|.|..+++..++. +..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999876 89999999999999999999999999999999874
No 76
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=1.4e-14 Score=136.11 Aligned_cols=83 Identities=34% Similarity=0.641 Sum_probs=79.6
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+.||+.+||+|++|.+.+++.+|++.|+|..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCC
Q 015069 213 ATS 215 (413)
Q Consensus 213 ~~~ 215 (413)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 553
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=7.7e-14 Score=120.20 Aligned_cols=94 Identities=20% Similarity=0.393 Sum_probs=84.4
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
|..........++-++|||.-|+++++|.+|+..|+.||+|..|+|++|+.||+++|||||+|+++.+...|.+..+|+.
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 33333444555778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEccCC
Q 015069 199 LGNRQIRCNWAAKG 212 (413)
Q Consensus 199 l~g~~i~v~~~~~~ 212 (413)
|+|+.|.|.+-...
T Consensus 168 Idgrri~VDvERgR 181 (335)
T KOG0113|consen 168 IDGRRILVDVERGR 181 (335)
T ss_pred ecCcEEEEEecccc
Confidence 99999999886543
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=99.66 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=68.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
+.|||+|||+++|.|++.++|.+| |.|..|++... +|.|||.|++..+|.+|+..|+|..+.++.|.|-|-.
T Consensus 19 riLyirNLp~~ITseemydlFGky--g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKY--GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcc--cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 679999999999999999999999 99999999765 8999999999999999999999999999999998753
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=7.4e-15 Score=117.30 Aligned_cols=86 Identities=27% Similarity=0.525 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
..+..|||+|||+.+||.||.-.|+.||+|++|.+++|+.||+++||||+-|++..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCC
Q 015069 210 AKGATS 215 (413)
Q Consensus 210 ~~~~~~ 215 (413)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 544433
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.6e-13 Score=97.62 Aligned_cols=65 Identities=32% Similarity=0.672 Sum_probs=60.2
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
|+|+|||..+++++|+++|+.| |.|..+++.++ +|+|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~--g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF--GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS--SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999 99999999887 69999999999999999999999999999985
No 81
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=4.5e-13 Score=123.02 Aligned_cols=145 Identities=29% Similarity=0.433 Sum_probs=112.9
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
..+|||+|||.++++++|+++|..||.|..+.+..|+.++.++|+|||+|.+.+++..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999753
Q ss_pred -CCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 212 -GATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
.......... ... ...................+++.+++..++..++...|..+ |.+....+...
T Consensus 195 ~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN----LDA--------SFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR--GDIVRASLPPS 260 (306)
T ss_pred ccccccccccc----cch--------hhhccccccccccccccceeeccccccccchhHHHHhcccc--ccceeeeccCC
Confidence 1000000000 000 00000011122233445779999999999999999999999 89977777655
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.2e-14 Score=110.63 Aligned_cols=77 Identities=32% Similarity=0.571 Sum_probs=71.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
.++|||+||+..+++.||..+|..| |.|.+|.|.+. .|||||+|+++.+|..|+..|+|..|.|..|+|++.+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y--G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY--GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc--CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4789999999999999999999999 99999999876 79999999999999999999999999999999999876543
No 83
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.9e-13 Score=113.57 Aligned_cols=76 Identities=33% Similarity=0.467 Sum_probs=72.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
...+|.|.||+.++++++|+++|.+| |.|.++.|.+| ||||||+|.+.++|.+||+.|||+-+++-.|+|.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~f--g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPF--GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhcc--CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 55789999999999999999999999 99999999987 79999999999999999999999999999999999
Q ss_pred cCCC
Q 015069 326 GSKP 329 (413)
Q Consensus 326 a~~~ 329 (413)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9874
No 84
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=122.50 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=125.9
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhc---c-CCcceEEEEec---CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSS---T-GPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~---~-G~v~~v~i~~~---~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
.-.|.+++||+++++.|+.+||.. . |.++.|.++.. +..|-|||.|..+++|..|+. .|...|.-|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 346899999999999999999962 2 34566777765 346899999999999999997 565566666555544
Q ss_pred ccc----------------------------CCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCC-ee--eEEEeecC
Q 015069 120 AYA----------------------------SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT-CS--DARVMWDQ 168 (413)
Q Consensus 120 ~~~----------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~--~~~i~~d~ 168 (413)
++. ...........+|.+++||+..+.+||.++|..|.. |. .+.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 331 011122234678999999999999999999999853 33 3677766
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 169 KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 169 ~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..|+..|.|||+|.+.|+|..|...++.+..++|.|.|-.+.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 568999999999999999999999999888889999987653
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=103.89 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=69.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
.+++|||+||.+.++||+|.++|+.+ |+|..|.+--| -|||||+|.+.++|..|++.++|..++.++|++.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c--G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC--GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc--cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 44899999999999999999999999 99999988766 38999999999999999999999999999999998
Q ss_pred cC
Q 015069 326 GS 327 (413)
Q Consensus 326 a~ 327 (413)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 63
No 86
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.4e-13 Score=103.60 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=76.6
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
.+++|||+||++.++|+.|.++|+++|+|..|.+-.|+.+..+=|||||+|.+.++|..|++.++|..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999874
Q ss_pred C
Q 015069 211 K 211 (413)
Q Consensus 211 ~ 211 (413)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=1.7e-13 Score=111.81 Aligned_cols=88 Identities=28% Similarity=0.479 Sum_probs=81.1
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
.+...-..|.|-||.+.++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|..|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 015069 207 NWAAKGAT 214 (413)
Q Consensus 207 ~~~~~~~~ 214 (413)
.++.-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 88755433
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=119.89 Aligned_cols=145 Identities=25% Similarity=0.376 Sum_probs=113.4
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
.++|||+|||.++++++|.++|..||.|..|.+..++ .+|+|||+|.+.++|..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999998874 489999999999999999999999999999999999542
Q ss_pred ----CCCCC-----------------CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEe
Q 015069 123 ----SSQRE-----------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSF 181 (413)
Q Consensus 123 ----~~~~~-----------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f 181 (413)
..... .......+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 21111 112345699999999999999999999999997666654433333333444444
Q ss_pred CCHHHHHHHH
Q 015069 182 RNQEDAQSAI 191 (413)
Q Consensus 182 ~~~~~A~~a~ 191 (413)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4444444333
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=2.9e-13 Score=110.46 Aligned_cols=80 Identities=28% Similarity=0.475 Sum_probs=73.4
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
........|.|.||.+.++.++|+.+|++| |.|-+|.|.+| +|||||.|.+..+|+.|++.|+|..|+|+.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekY--G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKY--GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHh--CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 334455789999999999999999999999 99999999988 7999999999999999999999999999999
Q ss_pred EEEecCCC
Q 015069 322 KCSWGSKP 329 (413)
Q Consensus 322 ~V~~a~~~ 329 (413)
+|.+|+-.
T Consensus 86 rVq~aryg 93 (256)
T KOG4207|consen 86 RVQMARYG 93 (256)
T ss_pred eehhhhcC
Confidence 99988643
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.5e-12 Score=121.60 Aligned_cols=166 Identities=20% Similarity=0.342 Sum_probs=131.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
-....++|++||..++++.++++...||++....++.+. ++||||.+|.++.....|+..|||+.+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 345679999999999999999999999999999999875 4789999999999999999999999999999999987
Q ss_pred ccCCCCCC---------------------CCCCceEEEcCCC--ccc-C-------hHHHHhhhccCCCeeeEEEeecC-
Q 015069 121 YASSQRED---------------------TSGHFNVFVGDLS--PEV-T-------DATLFACFSVFPTCSDARVMWDQ- 168 (413)
Q Consensus 121 ~~~~~~~~---------------------~~~~~~l~v~nl~--~~~-~-------~~~l~~~f~~~G~v~~~~i~~d~- 168 (413)
........ ..++..|.+.|+= .++ + -++++.-+++||.|.+|.+.++.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 64322111 1222334444441 111 1 14567778899999999998762
Q ss_pred --CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 169 --KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 169 --~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
......|..||+|.+.+++++|++.|+|..+.||.+...|-.
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 223456789999999999999999999999999999998864
No 91
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=6.1e-12 Score=117.76 Aligned_cols=160 Identities=22% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
.+.+.++|+|.|||.+|++++|+.+|+.||+|..|+.-+. .++..||+|.|..+|+.|++.|++..|.|+.|+......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 3566789999999999999999999999999998655433 468999999999999999999999999999888221111
Q ss_pred CC-------------------CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCC
Q 015069 123 SS-------------------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN 183 (413)
Q Consensus 123 ~~-------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~ 183 (413)
.. ..........++. .|++..+..-+...+..+|.+.. + +++.-+..-+++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~-----~~~~~~hq~~~~~~~ 222 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-R-----ETPLLNHQRFVEFAD 222 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-c-----cccchhhhhhhhhcc
Confidence 00 0011111222333 38777776555566666676644 2 223333356788888
Q ss_pred HHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 184 QEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 184 ~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
..++..+... .|..+.+....+.++..
T Consensus 223 ~~s~a~~~~~-~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 223 NRSYAFSEPR-GGFLISNSSGVITFSGP 249 (549)
T ss_pred ccchhhcccC-CceecCCCCceEEecCC
Confidence 8888666552 26666666655655543
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.3e-12 Score=111.39 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...||+|+||++.+||++|++||+.||+|.+|+|++++. +++|||+|.++++|..|+. |+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 457999999999999999999999999999999999864 5799999999999999996 999999999999997653
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.2e-13 Score=101.41 Aligned_cols=86 Identities=22% Similarity=0.448 Sum_probs=80.2
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
......|||+++....+|++|.+.|..||+|..+.+-.|+.||..|||++|+|++.+.|..|++.+||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015069 209 AAKGAT 214 (413)
Q Consensus 209 ~~~~~~ 214 (413)
+..+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 865543
No 94
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.40 E-value=4.9e-12 Score=120.53 Aligned_cols=162 Identities=13% Similarity=0.004 Sum_probs=123.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec---C-CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---D-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~---~-~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.+.+.+-+.+.+.+.++.|+++||... .|..+.+..+ . ..|-++|+|....++.+|++ .|...+-.|.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 446678899999999999999999853 2444444433 2 37899999999999999996 6777777888777644
Q ss_pred ccCC------------------------------------CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeee-EE
Q 015069 121 YASS------------------------------------QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-AR 163 (413)
Q Consensus 121 ~~~~------------------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~ 163 (413)
.... .+-....+.+|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 3110 0112233568999999999999999999998888887 55
Q ss_pred EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 164 VMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 164 i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
|-+. -+++.++.|||+|.+++++..|...-+...++.|.|+|+-.
T Consensus 467 lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 5444 56788999999999999888888755666677788888654
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=1.3e-12 Score=119.93 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=70.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCH--HHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTH--PEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~--~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
...+|||+||++.+++++|+.+|..| |.|.+|.|++. ||||||+|.+. .++.+|+..|||..+.||.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeF--GsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPM--GTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34789999999999999999999999 99999999977 89999999987 78999999999999999999999886
Q ss_pred C
Q 015069 328 K 328 (413)
Q Consensus 328 ~ 328 (413)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3e-13 Score=111.33 Aligned_cols=88 Identities=35% Similarity=0.533 Sum_probs=82.2
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
...++|||++|..+++|.-|...|-+||.|.+|.+..|.++.++|||+||+|.-.|||..||..+|+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 015069 210 AKGATSGD 217 (413)
Q Consensus 210 ~~~~~~~~ 217 (413)
.+......
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 87765543
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=2.7e-12 Score=109.41 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=68.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
..+|+|+||++.+|+++|+++|+.| |+|.+|+|.++ +++|||+|.++++|..|+ .|||..|.|++|.|......
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~--G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHC--GAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhc--CCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 4789999999999999999999999 99999999987 579999999999999998 58999999999999876543
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.5e-12 Score=86.86 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=51.9
Q ss_pred HHHHhhccCccceEEEEeeccc-cEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 270 LHRHFHALCVGTIEDVRVQRDK-GFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 270 L~~~F~~~~~G~i~~v~~~~~k-g~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
|+++|++| |+|.++.+.+++ ++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~f--G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF--GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT--S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCc--ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999 999999999987 99999999999999999999999999999999985
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.6e-12 Score=91.53 Aligned_cols=68 Identities=38% Similarity=0.719 Sum_probs=64.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccc----cEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK----GFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 255 ~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~k----g~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
+|+|+|||..+++++|+++|+.| |.|..+++.+++ |+|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~--g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF--GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999 999999999875 999999999999999999999999999999874
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2e-12 Score=92.09 Aligned_cols=70 Identities=37% Similarity=0.700 Sum_probs=64.8
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
+|+|+|||..+++++|+++|+.||+|..+.+..++ .+++|||+|.+.++|..|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988765 46899999999999999999999999999988774
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=6.1e-14 Score=136.72 Aligned_cols=228 Identities=20% Similarity=0.219 Sum_probs=185.5
Q ss_pred CCCeEEEcCCCccCCHH-HHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 46 TCRSVYVGNIHPQVTNA-LLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~-~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
..+...+.++-+..... ..+..|+.+|.|+.|++-..+ ...+.++.+....++..+.. -.+..+.++...|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34456677776666555 678899999999988887632 13489999999999999986 7788888888888777
Q ss_pred ccCCCCCCC-------CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015069 121 YASSQREDT-------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (413)
Q Consensus 121 ~~~~~~~~~-------~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (413)
.+....... ....++||+||+..+.+.||...|..+|.+..+++......++.||+||++|.+++.+.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 655432222 1235699999999999999999999999988887765566789999999999999999999995
Q ss_pred hCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHH
Q 015069 194 LNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRH 273 (413)
Q Consensus 194 l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~ 273 (413)
.+++.++ + ..|+|+|.|+..|.++|+.+
T Consensus 729 ~d~~~~g-K---------------------------------------------------~~v~i~g~pf~gt~e~~k~l 756 (881)
T KOG0128|consen 729 RDSCFFG-K---------------------------------------------------ISVAISGPPFQGTKEELKSL 756 (881)
T ss_pred hhhhhhh-h---------------------------------------------------hhhheeCCCCCCchHHHHhh
Confidence 4444333 1 44999999999999999999
Q ss_pred hhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 274 FHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 274 F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
+.++ |++.+++++.. +|.|+|.|.++.++.++....++..+.-+.+.|..+.+
T Consensus 757 ~~~~--gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 757 ASKT--GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccc--CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999 99999987654 79999999999999999999899888888888877655
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.36 E-value=2.1e-11 Score=116.25 Aligned_cols=187 Identities=13% Similarity=0.035 Sum_probs=123.7
Q ss_pred EEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCC
Q 015069 135 VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (413)
Q Consensus 135 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~ 214 (413)
+.+.+.+++.++.|++++|... .|....|..+...+...|-++|+|....++.+|+. -+...+-.|.+.+.......-
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcccc
Confidence 7788999999999999998543 34455566665555558899999999999999987 455556677777654422211
Q ss_pred CCCccccC-CCccccc----ccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEE-EEee
Q 015069 215 SGDEKQSS-DSKSVVE----LTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQ 288 (413)
Q Consensus 215 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~-v~~~ 288 (413)
........ ....... ...+.... ........+.......+|||..||..+++.++.++|... -.|++ |.|.
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~-~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~--~~Ved~I~lt 468 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRA-MVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA--AAVEDFIELT 468 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCccc-ccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh--hhhhheeEec
Confidence 11000000 0000000 00000000 111112233444556899999999999999999999987 67777 5554
Q ss_pred cc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 289 RD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 289 ~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
+. ++.|||.|.+++++..|...-+.+.++.|.|+|.-.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 33 689999999999999998876777889999999643
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.6e-13 Score=108.71 Aligned_cols=86 Identities=35% Similarity=0.545 Sum_probs=79.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.++|||++|...+|+.-|...|=+| |.|.+|.++-| |||+||+|...|+|..||..||+.+|.||.|+|.|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPF--GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPF--GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccc--cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3889999999999999999999999 99999999865 899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 015069 327 SKPTPPGTSSTPLP 340 (413)
Q Consensus 327 ~~~~~~~~~~~~~~ 340 (413)
++......+..|..
T Consensus 88 kP~kikegsqkPvW 101 (298)
T KOG0111|consen 88 KPEKIKEGSQKPVW 101 (298)
T ss_pred CCccccCCCCCCcc
Confidence 99887766665553
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=8.1e-12 Score=107.89 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=75.3
Q ss_pred CCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 015069 247 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP 320 (413)
Q Consensus 247 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~ 320 (413)
.....+.+||||+.|+++++|..|+..|+.| |.|+.|+|++| +|||||+|+++-+-..|.+..+|..|+|+.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~Y--G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKY--GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhc--CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3445778999999999999999999999999 99999999987 799999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 015069 321 IKCSWGSKPT 330 (413)
Q Consensus 321 l~V~~a~~~~ 330 (413)
|.|.+-+...
T Consensus 173 i~VDvERgRT 182 (335)
T KOG0113|consen 173 ILVDVERGRT 182 (335)
T ss_pred EEEEeccccc
Confidence 9998876543
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=6e-12 Score=89.24 Aligned_cols=70 Identities=43% Similarity=0.753 Sum_probs=66.4
Q ss_pred EcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 137 VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 137 v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..++|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999988878999999999999999999999999999999999876
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=6.7e-12 Score=84.75 Aligned_cols=56 Identities=38% Similarity=0.653 Sum_probs=51.4
Q ss_pred HHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 64 LQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 64 l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
|+++|++||+|..+.+.+++ +++|||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997766 689999999999999999999999999999999985
No 107
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5.8e-12 Score=105.48 Aligned_cols=74 Identities=31% Similarity=0.540 Sum_probs=66.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
..++|||+||+..++.|+|+++|+.| |+|.++.++.| |||+||+|.|.+.|.+|++. -.-.|+||+-.|.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqf--GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQF--GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHh--CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34789999999999999999999999 99999998865 89999999999999999986 45689999999988
Q ss_pred cCC
Q 015069 326 GSK 328 (413)
Q Consensus 326 a~~ 328 (413)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 108
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=6.8e-12 Score=95.41 Aligned_cols=78 Identities=29% Similarity=0.492 Sum_probs=72.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
...|||.++....|+++|.+.|..| |+|+.+.+--| ||||+|+|.+.++|+.|+..|||..|.|.+|.|.||
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dy--GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADY--GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhc--ccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 4779999999999999999999999 99999998765 799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
-.+.++
T Consensus 150 Fv~gp~ 155 (170)
T KOG0130|consen 150 FVKGPE 155 (170)
T ss_pred EecCCc
Confidence 765543
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=1.5e-11 Score=88.02 Aligned_cols=71 Identities=32% Similarity=0.717 Sum_probs=66.3
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
+|+|+|||..+++++|+++|+.+|+|..+.+..++. +++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999998763 78999999999999999999999999999998874
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=1.2e-11 Score=87.64 Aligned_cols=67 Identities=36% Similarity=0.701 Sum_probs=62.0
Q ss_pred EcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 52 VGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 52 V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
|+|||..+++++|+++|+.||+|..+.+..++. +++|||+|.+.++|..|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988754 7899999999999999999999999999988774
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.2e-11 Score=86.29 Aligned_cols=69 Identities=39% Similarity=0.747 Sum_probs=65.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 255 ~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
+|+|+|||..+++++|+++|+.+ |.|..+.+..+ +|+|||+|.+.++|..|++.+++..+.|++|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~--g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF--GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc--CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999 99999999876 68999999999999999999999999999999875
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3.6e-11 Score=85.11 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=55.5
Q ss_pred hHHHHhhhc----cCCCeeeEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 146 DATLFACFS----VFPTCSDAR-VMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 146 ~~~l~~~f~----~~G~v~~~~-i~~d~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
+++|+++|+ .||.|.++. ++.++.+ +.++|++||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 899999999999999999999999999999999876
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.7e-10 Score=107.38 Aligned_cols=148 Identities=23% Similarity=0.293 Sum_probs=115.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-------CCc---eEEEEEcCHHHHHHHHHHhCC----C-
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-------KSS---YGFVDYFDRRSAALAIVTLNG----R- 108 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-------~~g---~afV~F~~~~~A~~A~~~l~~----~- 108 (413)
.+-+++|||++||++++|+.|...|..||.+. |.+..+. .+| |+|+.|+++..+..-+..+.- -
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 35568899999999999999999999999765 4454211 256 999999999998887765432 1
Q ss_pred ------cccCcceEEEec-ccC-----CCCCCCCCCceEEEcCCCcccChHHHHhhhc-cCCCeeeEEEeecCCCCCccc
Q 015069 109 ------HIFGQPIKVNWA-YAS-----SQREDTSGHFNVFVGDLSPEVTDATLFACFS-VFPTCSDARVMWDQKTGRSRG 175 (413)
Q Consensus 109 ------~i~g~~l~v~~~-~~~-----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~i~~d~~~~~~~g 175 (413)
.++.+.++|..= ..+ .....-++.++|||++||..++.++|..+|+ -||-|..+-|..|++-+-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 112233333311 100 1234456788999999999999999999997 799999999999988899999
Q ss_pred EEEEEeCCHHHHHHHHH
Q 015069 176 FGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 176 ~afV~f~~~~~A~~a~~ 192 (413)
-|-|.|.+..+-.+||+
T Consensus 415 aGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cceeeecccHHHHHHHh
Confidence 99999999999999998
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.8e-10 Score=104.36 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=113.1
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeec--CCCCCccc---EEEEEeCCHHHHHHHHHHhCCceecCe
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD--QKTGRSRG---FGFVSFRNQEDAQSAINDLNGKWLGNR 202 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d--~~~~~~~g---~afV~f~~~~~A~~a~~~l~g~~l~g~ 202 (413)
....+++|||++||.+++|+.|...|..||.+..---.+. +.--.++| |+|+-|+++..+..-+..+.- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 3445678999999999999999999999998742111111 11123466 999999999999888776643 333
Q ss_pred EEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhh-ccCccc
Q 015069 203 QIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFH-ALCVGT 281 (413)
Q Consensus 203 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~-~~~~G~ 281 (413)
.+.+....+........ ..+........ .........+.+||||++||.-++.++|..+|+ -| |.
T Consensus 332 ~~yf~vss~~~k~k~VQ----IrPW~laDs~f--------v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ly--Gg 397 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQ----IRPWVLADSDF--------VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLF--GG 397 (520)
T ss_pred ceEEEEecCccccccee----EEeeEeccchh--------hhccCcccCccceEEecCCCCcchHHHHHHHHHHhc--Cc
Confidence 33333332222211100 00000000000 011334455679999999999999999999999 77 99
Q ss_pred eEEEEeecc------ccEEEEEeCCHHHHHHHHHH
Q 015069 282 IEDVRVQRD------KGFGFVRYSTHPEAALAIQM 310 (413)
Q Consensus 282 i~~v~~~~~------kg~afV~f~~~~~A~~A~~~ 310 (413)
|..+-|..| +|-+-|.|.+...-.+||.+
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999999877 79999999999999999984
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=5.3e-11 Score=112.16 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=71.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
+.|||+|+|+++++|+|.++|+.. |.|.+++++.| |||+|++|.+.++|.+|++.|||.++.||+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~--g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV--GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc--CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 789999999999999999999999 99999999877 7999999999999999999999999999999999996
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 543
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.2e-11 Score=121.05 Aligned_cols=146 Identities=16% Similarity=0.263 Sum_probs=121.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEE----ecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI----KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~----~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
+...++||+||+..+.+.||...|..+|.+..|.+. .++-+|.|||+|..++++..|+...+++.+ |+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-GK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-hh-------
Confidence 344679999999999999999999999977766655 233489999999999999999985554444 32
Q ss_pred ccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 121 YASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 121 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
..|+|+|.|+..|.++++.++.++|.+.+.+++.. ..|+++|.++|.|.++.++.++....++..+.
T Consensus 737 ------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 737 ------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ------------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhh
Confidence 25999999999999999999999999999987766 56999999999999999999999877777777
Q ss_pred CeEEEEEEccC
Q 015069 201 NRQIRCNWAAK 211 (413)
Q Consensus 201 g~~i~v~~~~~ 211 (413)
.+.+.|..+.+
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 66666666544
No 117
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.9e-12 Score=101.91 Aligned_cols=75 Identities=31% Similarity=0.492 Sum_probs=69.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.-|||+|||+.+||.||.-+|+.| |.|.+|.+++| +||||+.|++.-...-|+..|||..|.||.|+|....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqy--Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQY--GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeecc--CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 459999999999999999999999 99999999988 7999999999999999999999999999999998775
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
.-.
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 433
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=7.9e-11 Score=113.99 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=85.9
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~ 127 (413)
+||||++||..++|.||.++|+.||+|.+|.++. +++||||.+.+.++|.+|+.+|++..+.++.|+|.|+..+..+.
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 8999999999999999999999999999998855 56799999999999999999999999999999999998766544
Q ss_pred C--CCCCceEEEcCCCcccChHHHHhhhc
Q 015069 128 D--TSGHFNVFVGDLSPEVTDATLFACFS 154 (413)
Q Consensus 128 ~--~~~~~~l~v~nl~~~~~~~~l~~~f~ 154 (413)
+ ..-...+=|+-||++.-.+++..+++
T Consensus 500 e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 1 12222345666777655555666654
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1e-11 Score=102.47 Aligned_cols=145 Identities=24% Similarity=0.345 Sum_probs=122.3
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+||||.|+-..++|+-|.++|-+-|+|..|.|..++. ..||||+|.++-+..-|++.+||..+.+++++|.+-..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3468999999999999999999999999999998877653 45999999999999999999999999999999885433
Q ss_pred CCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015069 123 SSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (413)
Q Consensus 123 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~ 202 (413)
.+. .-|...++++.+...|+.-|++..+++.++. .|+.+.++|+.+........++....+..+.-+
T Consensus 87 ~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 87 NSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCc------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 221 1266778999999999999999999998874 488999999999988888888887776654433
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.9e-10 Score=99.65 Aligned_cols=79 Identities=30% Similarity=0.553 Sum_probs=71.2
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHH-hCCCeeCCeeEEEEec
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM-GNARILCGKPIKCSWG 326 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~-l~g~~l~gr~l~V~~a 326 (413)
.......+|||++|-..+++.+|+++|.+| |+|+++++...+++|||+|.+.+.|+.|.+. +|...|+|++|+|.|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqy--Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQY--GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhc--CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 344456899999999999999999999999 9999999999999999999999999998774 4555789999999999
Q ss_pred CC
Q 015069 327 SK 328 (413)
Q Consensus 327 ~~ 328 (413)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=2.3e-10 Score=110.84 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=75.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 332 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~ 332 (413)
++||||++|+.++++.||.++|+.| |.|.+|.+...+|||||.+.+..+|.+|+.+|+...+.++.|+|.|+..+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef--GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF--GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc--ccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999877654
Q ss_pred C
Q 015069 333 G 333 (413)
Q Consensus 333 ~ 333 (413)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 3
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.07 E-value=1.4e-10 Score=98.11 Aligned_cols=160 Identities=29% Similarity=0.470 Sum_probs=127.0
Q ss_pred EEEcCCCccCCHHH-H--HHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 50 VYVGNIHPQVTNAL-L--QEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 50 v~V~nLp~~~te~~-l--~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.+++++-.++..+- | ...|+.+-.+...++++++ -++++|+.|.....-.++-..-+++++..++|++.-...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555555544443 3 5677777766666666654 3689999999888888887777788888887776644322
Q ss_pred C---CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 124 S---QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 124 ~---~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
. ..+-.....+||.+.|..+++.+-|...|.+|-.-...++++|+.||+++||+||.|.+..++.+|+..++|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 2 2333456678999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEc
Q 015069 201 NRQIRCNWA 209 (413)
Q Consensus 201 g~~i~v~~~ 209 (413)
.|+|++..+
T Consensus 259 srpiklRkS 267 (290)
T KOG0226|consen 259 SRPIKLRKS 267 (290)
T ss_pred cchhHhhhh
Confidence 999987544
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.07 E-value=5.3e-10 Score=79.09 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=49.2
Q ss_pred HHHHHHHhh----ccCccceEEEE-ee--c------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 267 SVDLHRHFH----ALCVGTIEDVR-VQ--R------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 267 ~e~L~~~F~----~~~~G~i~~v~-~~--~------~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
+++|+++|+ .| |.|.++. +. + .+|++||+|.+.++|.+|++.|||+.+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~f--G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF--GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc--CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 99 9999985 32 2 27999999999999999999999999999999873
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=7.6e-10 Score=97.85 Aligned_cols=80 Identities=19% Similarity=0.427 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHH-hCCCcccCcceEEEec
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT-LNGRHIFGQPIKVNWA 120 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~-l~~~~i~g~~l~v~~~ 120 (413)
..+...+||||++|-..++|.||+++|-+||+|..+.++..+. ||||+|.+.+.|..|.++ ++...|.|++|+|.|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3566788999999999999999999999999999999987654 999999999999999976 4556689999999999
Q ss_pred ccC
Q 015069 121 YAS 123 (413)
Q Consensus 121 ~~~ 123 (413)
.+.
T Consensus 301 ~~~ 303 (377)
T KOG0153|consen 301 RPK 303 (377)
T ss_pred CCc
Confidence 883
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.8e-10 Score=99.70 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
.++.+.|||..|.+-++.+||.-+|+.||.|.+|.+++|+.||.+..||||+|++.++++.|.-.+++..|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015069 209 AAKG 212 (413)
Q Consensus 209 ~~~~ 212 (413)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8544
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=89.62 Aligned_cols=85 Identities=22% Similarity=0.396 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccC-CCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVF-PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......-+++..+|.-+.+.++..+|..| |.|..+++.+++.||.|+|||||+|++++.|.-|-+.+|+..+.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445569999999999999999999988 78899999999999999999999999999999999999999999999999
Q ss_pred EEccCC
Q 015069 207 NWAAKG 212 (413)
Q Consensus 207 ~~~~~~ 212 (413)
++..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998665
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=5.1e-10 Score=110.25 Aligned_cols=161 Identities=19% Similarity=0.342 Sum_probs=138.4
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
+...++|||++||+..+++.+|+..|..+|.|.+|.|-..+ ...||||.|.+...+-.|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45677999999999999999999999999999999887653 245999999999999999999999998887888877
Q ss_pred cccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
..+ ....++.+++++|...+....|...|..||+|..|.+- +.--|+||.|++...+..|+..+.|..|
T Consensus 448 G~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcC
Confidence 654 34566789999999999999999999999999887654 3346999999999999999999999999
Q ss_pred cC--eEEEEEEccCCCC
Q 015069 200 GN--RQIRCNWAAKGAT 214 (413)
Q Consensus 200 ~g--~~i~v~~~~~~~~ 214 (413)
+| +.+.|.|+.....
T Consensus 517 G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPGA 533 (975)
T ss_pred CCCCcccccccccCCCC
Confidence 76 6788888865543
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=6.6e-10 Score=109.48 Aligned_cols=163 Identities=19% Similarity=0.328 Sum_probs=137.4
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
..+++||++||+..+++.+|+..|..+|.|.+|.|-+.+ -+..--|+||.|.+...+.+|...+.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 346789999999999999999999999999999887552 3444568999999999999999888888876555554443
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~ 289 (413)
.. .....+.+++++|..-+....|...|..| |.|..|.+..
T Consensus 449 ~~-------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~f--Gpir~Idy~h 489 (975)
T KOG0112|consen 449 QP-------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF--GPIRIIDYRH 489 (975)
T ss_pred cc-------------------------------------ccccceeeccCCCCCCChHHHHHHHhhcc--Ccceeeeccc
Confidence 21 11223679999999999999999999999 9999999988
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCCCC
Q 015069 290 DKGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPTPP 332 (413)
Q Consensus 290 ~kg~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~~~~~~ 332 (413)
.-.|++|.|.+...++.|+..|-|..|+| ++|+|.|+..+...
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 88899999999999999999999999976 78999999877643
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=84.90 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=66.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee-cc------ccEEEEEeCCHHHHHHHHHHhCCCee---CCeeEE
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-RD------KGFGFVRYSTHPEAALAIQMGNARIL---CGKPIK 322 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~-~~------kg~afV~f~~~~~A~~A~~~l~g~~l---~gr~l~ 322 (413)
.++|||.+||.++...+|..+|..| -..+.+.+. .+ +.+|||.|.+..+|..|++.|||..| .+..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f--~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRF--HGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccC--CCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 5899999999999999999999999 444444443 22 36899999999999999999999988 478999
Q ss_pred EEecCCCCCCCCC
Q 015069 323 CSWGSKPTPPGTS 335 (413)
Q Consensus 323 V~~a~~~~~~~~~ 335 (413)
+.++|+.......
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9999876644433
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.90 E-value=1.8e-09 Score=97.40 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=133.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec----CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~----~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
...++.|++++-+.+.+.++..++..+|.+..+..... ..++++++.|...+.+..++.......+.++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45788999999999999999999999997666655542 35889999999999999999743333444443333222
Q ss_pred ccC-------CCCCCCCCCceEE-EcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 015069 121 YAS-------SQREDTSGHFNVF-VGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 121 ~~~-------~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (413)
+.. ..+.......+++ |.+++..+++++|+..|..+|.|..+++..++.++.++|++||.|....++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 211 1122233334455 99999999999999999999999999999999999999999999999999999998
Q ss_pred HhCCceecCeEEEEEEccCCC
Q 015069 193 DLNGKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 193 ~l~g~~l~g~~i~v~~~~~~~ 213 (413)
. ....+.++++.+.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 8888999999998876553
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=7.8e-10 Score=91.53 Aligned_cols=141 Identities=24% Similarity=0.298 Sum_probs=115.4
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
...++|||.|+...++|+-|.++|-.-|+|..+.|..+ ..++.| ||||+|.++-.+..|++.+||..+.++.+.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc-
Confidence 45678999999999999999999999999999988866 446666 999999999999999999999999999887643
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEec----CCCCCCHHHHHHHhhccCccceEEE
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGN----LSSEVTSVDLHRHFHALCVGTIEDV 285 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~e~L~~~F~~~~~G~i~~v 285 (413)
+-++ |+..++++.+...|+.. |.+..+
T Consensus 84 -----------------------------------------------r~G~shapld~r~~~ei~~~v~s~a--~p~~~~ 114 (267)
T KOG4454|consen 84 -----------------------------------------------RCGNSHAPLDERVTEEILYEVFSQA--GPIEGV 114 (267)
T ss_pred -----------------------------------------------ccCCCcchhhhhcchhhheeeeccc--CCCCCc
Confidence 3333 67788999999999999 999999
Q ss_pred Eeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 286 RVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 286 ~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
++.++ +.+.|+.+......-.++....+..+.-+++.
T Consensus 115 R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 115 RIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred cccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 98765 56888888777666677776666655444443
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.85 E-value=1.6e-08 Score=94.90 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=72.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
...++|||.+|...+...+|+.+|++| |+|.-.+++.+ +.|+||++.+.++|.++|+.||..+|.||.|.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKy--GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKY--GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHh--cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 345889999999999999999999999 99999999876 7899999999999999999999999999999999
Q ss_pred ecCCCC
Q 015069 325 WGSKPT 330 (413)
Q Consensus 325 ~a~~~~ 330 (413)
-+++..
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 987654
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.9e-09 Score=92.34 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=73.6
Q ss_pred CCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccc------cEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 015069 247 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDK------GFGFVRYSTHPEAALAIQMGNARILCGKP 320 (413)
Q Consensus 247 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~k------g~afV~f~~~~~A~~A~~~l~g~~l~gr~ 320 (413)
....|+.+.|||..|.+-+|+|+|.-+|+.| |+|.+|.+++|+ .||||+|.+.++..+|.-+|++..|++++
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrF--G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRF--GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhc--ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 3466788999999999999999999999999 999999999983 58999999999999999999999999999
Q ss_pred EEEEecCC
Q 015069 321 IKCSWGSK 328 (413)
Q Consensus 321 l~V~~a~~ 328 (413)
|+|.|+-+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99998743
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.82 E-value=5.2e-09 Score=94.38 Aligned_cols=173 Identities=24% Similarity=0.301 Sum_probs=133.4
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
...++|++++...+.+.+...++...|.+....+........++|++++.|...+.+..++.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45679999999999999899999999988888877767788999999999999999999999544446666655443332
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
....... ........+......+|.+|++.+++++|+.+|..+ |.|..+++..+
T Consensus 167 ~~~~~~~------------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~--~~i~~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGLRPK------------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS--GEITSVRLPTD 220 (285)
T ss_pred ccccccc------------------------chhcccccCccccceeecccccccchHHHhhhccCc--CcceeeccCCC
Confidence 2210000 000011122222335599999999999999999999 99999999865
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
+|+++|.|.+...+..++.. ....+.++++.+.+.+...
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 78999999999999999987 8889999999999887654
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=83.67 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=69.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
...++|..+|..+.+.++..+|..|+ |.|..+++.|+ ||||||+|.+.+.|.-|.+.||+..|.++.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 35689999999999999999999997 89999999766 799999999999999999999999999999999886
Q ss_pred CCC
Q 015069 327 SKP 329 (413)
Q Consensus 327 ~~~ 329 (413)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 443
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=1e-08 Score=96.16 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=74.6
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
.++|+|.+|+..+...||+++|++||.|+..+++.+..+.-.+.|+||++.+.++|.+||+.|+.+.|.|+.|.|+.+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4679999999999999999999999999999999998888889999999999999999999999999999999998874
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.75 E-value=1.3e-08 Score=86.37 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=114.5
Q ss_pred ceEEEcCCCcccChHH-H--HhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 133 FNVFVGDLSPEVTDAT-L--FACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~-l--~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
...++.++-..+..+- | ...|+.+-.+....+++++ -+.-++++|+.|.....-.++-..-+++.++-+.++..-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4456666655555444 2 5566666666666777663 4667889999998887766666655666666655444222
Q ss_pred cCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec
Q 015069 210 AKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR 289 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~ 289 (413)
....... ..+-.....+||.+.|...++++.|-..|.+| -.....++++
T Consensus 176 tswedPs-----------------------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf--psf~~akviR 224 (290)
T KOG0226|consen 176 TSWEDPS-----------------------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF--PSFQKAKVIR 224 (290)
T ss_pred cccCCcc-----------------------------cccCccccceeecccccccccHHHHHHHHHhc--cchhhccccc
Confidence 1111000 00001122679999999999999999999999 7777777776
Q ss_pred c------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 290 D------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 290 ~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
| +||+||.|.+..++.+|+..|||..++.|+|+++-.
T Consensus 225 dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 225 DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 6 799999999999999999999999999999988543
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=9.6e-08 Score=70.83 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=65.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeC----CeeEEE
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILC----GKPIKC 323 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~----gr~l~V 323 (413)
+||.|+|||...|.++|.+++...+.|....+.++-| .|||||.|.+++.|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999998877788888777755 799999999999999999999999774 567788
Q ss_pred EecCC
Q 015069 324 SWGSK 328 (413)
Q Consensus 324 ~~a~~ 328 (413)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.70 E-value=1.2e-07 Score=66.65 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=49.3
Q ss_pred cEEEEecCCCCCCHHH----HHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 254 TTVYVGNLSSEVTSVD----LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~----L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
..|+|.|||.+.+... |+.++..+| |.|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4589999999888654 666777887 999988 357999999999999999999999999999999999843
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=6.6e-08 Score=83.97 Aligned_cols=87 Identities=30% Similarity=0.401 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
......+|.|.|||+.++++||+++|..||.+..+-+.+| ..|.+.|.|-|.|...++|..+++.++|..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3344568999999999999999999999999999999888 679999999999999999999999999999999999998
Q ss_pred EccCCCCC
Q 015069 208 WAAKGATS 215 (413)
Q Consensus 208 ~~~~~~~~ 215 (413)
........
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 77655443
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=2.3e-08 Score=94.19 Aligned_cols=180 Identities=21% Similarity=0.252 Sum_probs=117.6
Q ss_pred CCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015069 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (413)
Q Consensus 124 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~ 203 (413)
...+...+.++|+|-|||.++++++|+.+|+.||+|..++. +...+|.+||+|-+..+|++|++.|++..+.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 33444667789999999999999999999999999988553 4566899999999999999999999999999998
Q ss_pred EEEEEccCCCCCCCccccCCCcccccccCCCCccc-cc-cCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccc
Q 015069 204 IRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDG-QE-KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGT 281 (413)
Q Consensus 204 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~ 281 (413)
|+......... ....+..... .. ......+...+. ..++. .|++..+..-++..|.-+ |.
T Consensus 142 ~k~~~~~~~~~--------------~~~~~~~~~~~~~~p~a~s~pgg~~~-~~~~g-~l~P~~s~~~~~~~~~~~--~~ 203 (549)
T KOG4660|consen 142 IKRPGGARRAM--------------GLQSGTSFLNHFGSPLANSPPGGWPR-GQLFG-MLSPTRSSILLEHISSVD--GS 203 (549)
T ss_pred hcCCCcccccc--------------hhcccchhhhhccchhhcCCCCCCcC-Cccee-eeccchhhhhhhcchhcc--Cc
Confidence 87211111100 0000000000 00 001111111221 22332 388888887777777777 66
Q ss_pred eEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 282 IEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 282 i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
+.. +.... +..-|++|.+..++..+...+ |..+.+......+..+
T Consensus 204 ~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 204 SPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 666 33322 345678888888886666543 7777777777777655
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=1.5e-07 Score=81.75 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=70.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
....+|+|.|||+.|+++||+++|..| |.++.+-+..+ .|+|-|.|...++|.+|++.+||..++|++|++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~--~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEF--GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHh--ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344789999999999999999999999 89999888766 58999999999999999999999999999999988
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
..++..
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 766543
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.60 E-value=2.6e-07 Score=89.26 Aligned_cols=82 Identities=28% Similarity=0.510 Sum_probs=73.7
Q ss_pred CCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec---------cccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 015069 247 PENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR---------DKGFGFVRYSTHPEAALAIQMGNARILC 317 (413)
Q Consensus 247 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~---------~kg~afV~f~~~~~A~~A~~~l~g~~l~ 317 (413)
....+..+.|||+||++.++++.|...|..| |+|.+++++- ++.|+||-|.+..+|.+|++.|+|..+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrf--gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRF--GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhccc--CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3445667889999999999999999999999 9999999872 2689999999999999999999999999
Q ss_pred CeeEEEEecCCCC
Q 015069 318 GKPIKCSWGSKPT 330 (413)
Q Consensus 318 gr~l~V~~a~~~~ 330 (413)
+..+++.|++.-.
T Consensus 246 ~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 246 EYEMKLGWGKAVP 258 (877)
T ss_pred eeeeeeccccccc
Confidence 9999999997543
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=4e-07 Score=67.53 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=66.9
Q ss_pred ceEEEcCCCcccChHHHHhhhccC--CCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----CeEEEE
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVF--PTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG----NRQIRC 206 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~----g~~i~v 206 (413)
++|+|+|||...+.++|.+++... |...-+.+..|..++.+.|||||.|.+.+.+.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988643 77777888889889999999999999999999999999999875 344566
Q ss_pred EEcc
Q 015069 207 NWAA 210 (413)
Q Consensus 207 ~~~~ 210 (413)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6653
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.55 E-value=2.3e-07 Score=89.60 Aligned_cols=77 Identities=29% Similarity=0.591 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-------CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-------KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-------~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
...+.|||+||+..++|+.|...|..||+|..|+|+..+ .+.|+||-|-+..||..|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 445669999999999999999999999999999999643 3679999999999999999999999999999999
Q ss_pred Eecc
Q 015069 118 NWAY 121 (413)
Q Consensus 118 ~~~~ 121 (413)
-|++
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9985
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.54 E-value=1.4e-07 Score=88.67 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
....+|||+|||.++++++|+++|+.||+|+...|.... ...||||+|.+.+.+..|++ .+...|.+++|.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 334569999999999999999999999999988887643 34799999999999999997 5688899999999965
Q ss_pred cc
Q 015069 121 YA 122 (413)
Q Consensus 121 ~~ 122 (413)
.+
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 44
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=4.4e-07 Score=63.79 Aligned_cols=72 Identities=15% Similarity=0.314 Sum_probs=48.5
Q ss_pred CeEEEcCCCccCCHHHHHH----HHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 48 RSVYVGNIHPQVTNALLQE----VFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~----~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
..|+|.|||.+.+...|+. ++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.++|....|+.|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999998877664 555677 45544 357999999999999999999999999999999999865
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
...
T Consensus 77 ~r~ 79 (90)
T PF11608_consen 77 NRE 79 (90)
T ss_dssp S--
T ss_pred ccc
Confidence 443
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=2.7e-08 Score=90.22 Aligned_cols=149 Identities=22% Similarity=0.312 Sum_probs=119.8
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecCeEEEEEEccC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIRCNWAAK 211 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-l~g~~i~v~~~~~ 211 (413)
+.+|++||.+.++.+||..+|...-.-.+-.++ ...||+||.+.+..-|.+|++.++|+. +.|..+.+.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 358999999999999999999764111111111 125899999999999999999999875 8999999887755
Q ss_pred CCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec-c
Q 015069 212 GATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-D 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~-~ 290 (413)
+... .+.+-|+|+|+...|+.|..+...| |.++.|.... +
T Consensus 76 kkqr-------------------------------------srk~Qirnippql~wevld~Ll~qy--g~ve~~eqvnt~ 116 (584)
T KOG2193|consen 76 KKQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQY--GTVENCEQVNTD 116 (584)
T ss_pred HHHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhcc--CCHhHhhhhccc
Confidence 4322 1558899999999999999999999 9999987643 3
Q ss_pred ccEE--EEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 291 KGFG--FVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 291 kg~a--fV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.-.+ -|+|.+.+.+..|+..|+|..+....++|.|-
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 2222 47899999999999999999999999999885
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=4.5e-08 Score=88.82 Aligned_cols=150 Identities=27% Similarity=0.414 Sum_probs=121.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhccC--CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCC-cccCcceEEEecccCCC
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTG--PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR-HIFGQPIKVNWAYASSQ 125 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~-~i~g~~l~v~~~~~~~~ 125 (413)
.+||+||.+.++..||..+|...- --..+.+ ..|||||.+.+..-|.+|++.++|+ .+.|+++.|.++.++..
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 589999999999999999998642 1112212 3579999999999999999999985 58899999998877653
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
+ ++++-|+|+|+...++-|..+...||.++.+..+. +....-..-|+|...+.++.++..++|..+.+..++
T Consensus 79 r-----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 79 R-----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred H-----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 3 34589999999999999999999999999886541 112222244678899999999999999999999999
Q ss_pred EEEcc
Q 015069 206 CNWAA 210 (413)
Q Consensus 206 v~~~~ 210 (413)
+.|..
T Consensus 151 ~~YiP 155 (584)
T KOG2193|consen 151 VGYIP 155 (584)
T ss_pred cccCc
Confidence 98864
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=2.9e-06 Score=79.95 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=67.5
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
.+|||.|||.+++.++|+++|..||+|....|......++..+||||+|.+.+++..+|++ +...++++++.|+.-...
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999888875433455559999999999999999994 577899999999876543
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=76.46 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
......+||+|+.+.++.+++...|+.||.+..+.+..|+.++.+|||+||+|.+.+.+..++. +++..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3445679999999999999999999999999999999999999999999999999999999999 999999999999987
Q ss_pred ccCC
Q 015069 209 AAKG 212 (413)
Q Consensus 209 ~~~~ 212 (413)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6443
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=1.2e-06 Score=76.60 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=68.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
...+||+|+++.+|.+++..+|+.| |.|..+.+..+ |||+||+|.+.+....++. |||..|.|+.+.|.+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~C--g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESC--GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeecc--CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3679999999999999999999999 99998888765 7899999999999999998 8999999999999988
Q ss_pred CCC
Q 015069 327 SKP 329 (413)
Q Consensus 327 ~~~ 329 (413)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.29 E-value=9.8e-07 Score=79.59 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=121.0
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ---KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
..|.|.||.++++.+.++.||...|.|.++.++.+. .-......|||.|.+...+..|.. |.++.+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 368999999999999999999999999999887532 223446789999999999988877 7777777777777655
Q ss_pred cCCCCCCCcc--ccCCC---cccccccCCCCccccccCCCC-------CCC---------CCCcccEEEEecCCCCCCHH
Q 015069 210 AKGATSGDEK--QSSDS---KSVVELTNGISEDGQEKSNED-------APE---------NNPQYTTVYVGNLSSEVTSV 268 (413)
Q Consensus 210 ~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~l~V~nLp~~~t~e 268 (413)
.......... ..... .......+...........+. .+. ...-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4333322210 00000 000000000000000000000 000 01113779999999999999
Q ss_pred HHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 269 DLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 269 ~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
++.+.|..+ |.|...++-.. ..+|.|+|........|+.. +|+++.-
T Consensus 167 e~~e~f~r~--Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k~ 215 (479)
T KOG4676|consen 167 ESGESFERK--GEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERKR 215 (479)
T ss_pred hhhhhhhhc--chhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhhh
Confidence 999999999 99999887643 56788999988888888875 7887763
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.23 E-value=3.8e-06 Score=63.96 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=45.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC-----eeCCeeEEEE
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR-----ILCGKPIKCS 324 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~-----~l~gr~l~V~ 324 (413)
..|+|.+++..++.++|++.|+.| |.|..|.+.+....|+|.|.+.+.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~--g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF--GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc--CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568999999999999999999999 99999999998889999999999999999876444 4555555443
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.9e-05 Score=60.11 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.8
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR 108 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~ 108 (413)
+.|+|.+++..++.++|++.|+.||.|..|.+.+ ....|||.|.++++|..|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 3689999999999999999999999988777754 3449999999999999999876543
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=3.5e-05 Score=66.05 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=83.1
Q ss_pred HHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccE
Q 015069 97 SAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (413)
Q Consensus 97 ~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~ 176 (413)
-|..|-..|++....|+.++|.|+... .|+|.||..-++.+.+..-|+.||+|....++.| ..+++.+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a----------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA----------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc----------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccccccc
Confidence 356666779999999999999999763 4999999999999999999999999998888877 45788899
Q ss_pred EEEEeCCHHHHHHHHHHhCCce----ecCeEEEEE
Q 015069 177 GFVSFRNQEDAQSAINDLNGKW----LGNRQIRCN 207 (413)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~----l~g~~i~v~ 207 (413)
++|+|...-.+.+|...+.-.- ..+++.-|.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred chhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 9999999999999999884332 244555443
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.81 E-value=1.5e-05 Score=72.09 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=113.6
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-------CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-------~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
...|.|.||.+.++.+.+..+|.-.|.|.++.++.... ...|||.|.+...+..|-. |.+..|-++-|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34799999999999999999999999999999987432 4589999999999999987 777777777777765
Q ss_pred cccCCCC--------------------------------CC---------------------CCCCceEEEcCCCcccCh
Q 015069 120 AYASSQR--------------------------------ED---------------------TSGHFNVFVGDLSPEVTD 146 (413)
Q Consensus 120 ~~~~~~~--------------------------------~~---------------------~~~~~~l~v~nl~~~~~~ 146 (413)
+.....+ .. ..-.++++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 4311000 00 000246899999999999
Q ss_pred HHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 147 ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 147 ~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
.++-++|..+|.|...++- .+...-+|.|+|........|+. .+|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999998766553 34445678899999999999988 5666554
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=8.5e-05 Score=48.79 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=43.0
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHH
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAI 102 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~ 102 (413)
++.|-|.|.|.+.. ++++.+|..||+|..+.+- ....+.||+|.+..+|.+|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 35789999997755 5566699999999987774 44569999999999999985
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.00012 Score=48.12 Aligned_cols=52 Identities=21% Similarity=0.496 Sum_probs=44.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHH
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAI 308 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~ 308 (413)
+.|-|.+.+.+..+ .+..+|..| |+|..+.+..++.+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~f--GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASF--GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhc--CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56889999976664 555689999 99999999977889999999999999985
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.68 E-value=6.9e-05 Score=66.58 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=75.5
Q ss_pred CeEEEcCCCccCCHHHH------HHHHhccCCcceEEEEecCC-----CceE--EEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 48 RSVYVGNIHPQVTNALL------QEVFSSTGPLEGCKLIKKDK-----SSYG--FVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l------~~~f~~~G~v~~v~i~~~~~-----~g~a--fV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
.-|||-+||..+..+++ .++|.+||.|..|.+.+... .+.+ ||.|.+.|||.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999888873 37999999999877765431 2334 99999999999999999999999999
Q ss_pred eEEEecccCC-----CCCCCCCCceEEEcCCCc---ccChHHHHhh
Q 015069 115 IKVNWAYASS-----QREDTSGHFNVFVGDLSP---EVTDATLFAC 152 (413)
Q Consensus 115 l~v~~~~~~~-----~~~~~~~~~~l~v~nl~~---~~~~~~l~~~ 152 (413)
|+..|...+- ....=.+..+.|+.---. +.+.+||.+.
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 9999876541 111223334566654332 3455666543
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=0.0001 Score=65.55 Aligned_cols=74 Identities=26% Similarity=0.481 Sum_probs=62.4
Q ss_pred cEEEEecCCCCCCHHH------HHHHhhccCccceEEEEeecc-------ccEE--EEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 254 TTVYVGNLSSEVTSVD------LHRHFHALCVGTIEDVRVQRD-------KGFG--FVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~------L~~~F~~~~~G~i~~v~~~~~-------kg~a--fV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
.-+||-+|++.+-.|+ =.++|..| |.|..|.+-+. .+.+ ||+|.+.++|.++|...+|..++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQy--GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQY--GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhc--cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4489999999887766 24789999 99999988654 2323 999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 015069 319 KPIKCSWGSKP 329 (413)
Q Consensus 319 r~l~V~~a~~~ 329 (413)
|.|+..|+..+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998643
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.64 E-value=0.00027 Score=52.96 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=53.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEE-------------eeccccEEEEEeCCHHHHHHHHHHhCCCeeCCe-
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-------------VQRDKGFGFVRYSTHPEAALAIQMGNARILCGK- 319 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~-------------~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr- 319 (413)
+.|.|-+.|.. ....|.++|+.| |+|.+.. ......+..|+|+++.+|.+|+.. ||..|.|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~--G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSF--GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCC--S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhc--ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 56889999987 566788999999 9998885 444577899999999999999987 99999885
Q ss_pred eEEEEecC
Q 015069 320 PIKCSWGS 327 (413)
Q Consensus 320 ~l~V~~a~ 327 (413)
-+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577764
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.60 E-value=4.9e-05 Score=68.53 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCee--------eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
....+|||-+||..+++.+|.++|..+|.|. .|.|.+|++|+.+||-|.|.|.+...|..|+..++++.+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3445799999999999999999999999884 46778899999999999999999999999999999999999
Q ss_pred eEEEEEEccCCCC
Q 015069 202 RQIRCNWAAKGAT 214 (413)
Q Consensus 202 ~~i~v~~~~~~~~ 214 (413)
.+|+|..+.....
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999988876653
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00028 Score=52.83 Aligned_cols=74 Identities=20% Similarity=0.124 Sum_probs=53.7
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEE-E----------EecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCK-L----------IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~-i----------~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
..+.|.|-|.|.. ....|.+.|++||+|.+.. + ......++-.|.|.++.+|.+||. .||..|.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567999999988 7788999999999987664 0 011235699999999999999996 8999998864
Q ss_pred -eEEEecc
Q 015069 115 -IKVNWAY 121 (413)
Q Consensus 115 -l~v~~~~ 121 (413)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4477764
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.44 E-value=0.0002 Score=65.92 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=56.2
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-------------------ccEEEEEeCCHHHHHHHHH
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------------------KGFGFVRYSTHPEAALAIQ 309 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-------------------kg~afV~f~~~~~A~~A~~ 309 (413)
.+.+.++|.+.|||.+-.-|.|.++|+.+ |.|+.|+|++. +-+|+|+|.+.+.|.+|.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~--G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTV--GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcc--cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 34466899999999999999999999999 99999999854 4579999999999999999
Q ss_pred HhCCC
Q 015069 310 MGNAR 314 (413)
Q Consensus 310 ~l~g~ 314 (413)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 87544
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.43 E-value=0.00024 Score=64.23 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=70.6
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcc--------eEEEEecC----CCceEEEEEcCHHHHHHHHHHhC
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKD----KSSYGFVDYFDRRSAALAIVTLN 106 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~ 106 (413)
......+...||||.+||..+++++|.++|.++|.|. .|+|-+++ .++-|.|.|.+...|+.|+..++
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3344567778999999999999999999999998665 23333333 37799999999999999999999
Q ss_pred CCcccCcceEEEecccCC
Q 015069 107 GRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 107 ~~~i~g~~l~v~~~~~~~ 124 (413)
+..+.+..|+|..+....
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 999999999998876443
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.34 E-value=0.00013 Score=62.66 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=59.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCC---------c-------eEEEEEcCHHHHHHHHHHhCCCccc
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---------S-------YGFVDYFDRRSAALAIVTLNGRHIF 111 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~---------g-------~afV~F~~~~~A~~A~~~l~~~~i~ 111 (413)
-.||+++||+..+...|+++|+.||.|-.|.+-+.... + -|+|+|.+...|+.+.+.||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 45999999999999999999999999999988764321 1 4899999999999999999999999
Q ss_pred Ccc
Q 015069 112 GQP 114 (413)
Q Consensus 112 g~~ 114 (413)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 974
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.32 E-value=0.00012 Score=63.10 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=51.2
Q ss_pred HHHHHHhh-ccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 268 VDLHRHFH-ALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 268 e~L~~~F~-~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
|+|...|+ +| |.|+.+.+..+ +|-++|.|...++|++|++.||++.+.|++|...+..
T Consensus 83 Ed~f~E~~~ky--gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKY--GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHh--hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 89 99999988776 7889999999999999999999999999999998874
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.30 E-value=0.00023 Score=68.11 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee---CCeeE
Q 015069 245 DAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGKPI 321 (413)
Q Consensus 245 ~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l---~gr~l 321 (413)
..+..+...+.|+|.||-.-.|.-+|+.++..-| |.|++..|.+=|..|||.|.+.++|...+.+|||..+ +.+.|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3444666788999999999999999999999665 8888885444488999999999999999999999965 67899
Q ss_pred EEEecCC
Q 015069 322 KCSWGSK 328 (413)
Q Consensus 322 ~V~~a~~ 328 (413)
.+.|++.
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999853
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.0013 Score=60.71 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=63.3
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeec---CCCCC----------cccEEEEEeCCHHHHHHHHHH
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWD---QKTGR----------SRGFGFVSFRNQEDAQSAIND 193 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d---~~~~~----------~~g~afV~f~~~~~A~~a~~~ 193 (413)
+..-..++|.+.|||.+-..+.|.++|+.+|.|..|+|+.. +.+.+ .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999999999999999999999999865 22221 256899999999999999998
Q ss_pred hCCceecCeEEEEE
Q 015069 194 LNGKWLGNRQIRCN 207 (413)
Q Consensus 194 l~g~~l~g~~i~v~ 207 (413)
++....+-..++|.
T Consensus 306 ~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 306 LNPEQNWRMGLKVK 319 (484)
T ss_pred hchhhhhhhcchhh
Confidence 86554443334443
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00092 Score=57.59 Aligned_cols=96 Identities=25% Similarity=0.397 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCC
Q 015069 185 EDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSE 264 (413)
Q Consensus 185 ~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 264 (413)
.-|..|-..|++....|+.++|.|+.. ..|+|.||...
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~ 42 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQG 42 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchh
Confidence 346677777999999999999999854 34999999999
Q ss_pred CCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCC----eeCCeeEEEE
Q 015069 265 VTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNAR----ILCGKPIKCS 324 (413)
Q Consensus 265 ~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~----~l~gr~l~V~ 324 (413)
++.|.|.+-|+.| |.|....+..| .+-++|.|...-.|.+|...++-. ...+++.-|.
T Consensus 43 ~sndll~~~f~~f--g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 43 ASNDLLEQAFRRF--GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hhhHHHHHhhhhc--CccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 9999999999999 99998776655 467899999999999998876433 3344555443
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.18 E-value=0.00025 Score=61.07 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHh-ccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 62 ALLQEVFS-STGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 62 ~~l~~~f~-~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
+||...|. +||+|++++|..+.. .|-+||.|..+++|.+|+..||+..+.|++|..+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444555 899999998876543 7899999999999999999999999999999999764
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.08 E-value=0.0018 Score=45.83 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred EEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC
Q 015069 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~ 107 (413)
||--.+|..+...||.++|+.||.|. |.++.+. .|||...+.+.|..++..+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 44444999999999999999999886 6666554 699999999999999987763
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.05 E-value=0.0015 Score=57.15 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=56.7
Q ss_pred cEEEEecCC--CCCC---HHHHHHHhhccCccceEEEEeeccc-------cEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 254 TTVYVGNLS--SEVT---SVDLHRHFHALCVGTIEDVRVQRDK-------GFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 254 ~~l~V~nLp--~~~t---~e~L~~~F~~~~~G~i~~v~~~~~k-------g~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
+.|.++|+- -.++ ++++++.+++| |.|..|.|.... --.||+|...++|.+|+-.|||+.|+||.+
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKy--g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKY--GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhh--cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 345566652 2333 46788999999 999999887542 246999999999999999999999999999
Q ss_pred EEEecC
Q 015069 322 KCSWGS 327 (413)
Q Consensus 322 ~V~~a~ 327 (413)
+-.|-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887753
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.03 E-value=0.0047 Score=49.19 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCCCcccEEEEecCC-----CCCCH----HHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 015069 247 PENNPQYTTVYVGNLS-----SEVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC 317 (413)
Q Consensus 247 ~~~~~~~~~l~V~nLp-----~~~t~----e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~ 317 (413)
...+|+--+|.|.=+. ...-. .+|.+.|..| |.+.-+|+..+ .-.|+|.+-+.|.+|+. ++|..++
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~--GevvLvRfv~~--~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY--GEVVLVRFVGD--TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC--S-ECEEEEETT--CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC--CceEEEEEeCC--eEEEEECccHHHHHHHc-cCCcEEC
Confidence 3445556777776555 12223 3677888899 99998888876 78899999999999997 5999999
Q ss_pred CeeEEEEecCC
Q 015069 318 GKPIKCSWGSK 328 (413)
Q Consensus 318 gr~l~V~~a~~ 328 (413)
|+.|+|++.++
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999998654
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.96 E-value=0.0048 Score=41.50 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=45.2
Q ss_pred CeEEEcCCCccCCHHHHHHHHhcc----CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHh
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSST----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL 105 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~----G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l 105 (413)
.+|+|+|+. +.+.+||+.+|..| + ...|.++.+.+ |=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 479999985 69999999999999 5 45788988875 788899999999999753
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.0022 Score=56.27 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCcceEEEEecCCC-----ceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 61 NALLQEVFSSTGPLEGCKLIKKDKS-----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 61 e~~l~~~f~~~G~v~~v~i~~~~~~-----g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
++++.+-+.+||.|..|.|....+. ---||+|...++|.+|+-.|||.+|.||.++..|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4677889999999999999887542 247999999999999999999999999998888764
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0021 Score=61.36 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCceEEEcCCCcc--cChH----HHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-Ce
Q 015069 130 SGHFNVFVGDLSPE--VTDA----TLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NR 202 (413)
Q Consensus 130 ~~~~~l~v~nl~~~--~~~~----~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-g~ 202 (413)
.-...|+|.|+|-- ...+ -|..+|+++|.+....+..+..+| ++|+.|++|.+..+|..|++.|||..|+ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44567999999842 2222 356789999999999988886655 9999999999999999999999999875 45
Q ss_pred EEEEE
Q 015069 203 QIRCN 207 (413)
Q Consensus 203 ~i~v~ 207 (413)
+..|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55553
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.85 E-value=0.00097 Score=59.74 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=66.6
Q ss_pred CceEEEcCCCcccChHHHHhhhccCC--CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
..++||+||-+.+|++||.+.+...| .+.+++++.++.+|.+||||+|...+....++-++.|-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45799999999999999998887766 56788899999999999999999999999999999999999988765553
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.84 E-value=0.001 Score=57.34 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCce
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT--------GRSR----GFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~--------~~~~----g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
....||+++||+.++..-|+++|+.||.|-.|.+-....+ |..+ ..|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999988877654333 2222 236899999999999999999999
Q ss_pred ecCeE
Q 015069 199 LGNRQ 203 (413)
Q Consensus 199 l~g~~ 203 (413)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 181
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.81 E-value=0.0021 Score=60.18 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=64.3
Q ss_pred ccEEEEecCCCCC-CHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 253 YTTVYVGNLSSEV-TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 253 ~~~l~V~nLp~~~-t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
.+.|-+.-.|+.. +-++|..+|..| |+|..|.+..+.-.|.|+|.+..+|-+|.. .++..|++|.|+|.|-++...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~f--G~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQF--GEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhc--CccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCcc
Confidence 3556677777766 578999999999 999999998776779999999999988875 499999999999999987553
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.70 E-value=0.009 Score=47.62 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCCeEEEcCCC-----ccCCH----HHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 46 TCRSVYVGNIH-----PQVTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 46 ~~~tv~V~nLp-----~~~te----~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
+..||.|.=+- ...-. .+|.+.|..||+|.-|+++. +.-+|.|.+-++|-+|+. ++|..+.|+.|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 34577776544 11222 36778999999888776654 368999999999999996 999999999999
Q ss_pred EEecccCC
Q 015069 117 VNWAYASS 124 (413)
Q Consensus 117 v~~~~~~~ 124 (413)
|+.-.++.
T Consensus 101 i~LKtpdW 108 (146)
T PF08952_consen 101 IRLKTPDW 108 (146)
T ss_dssp EEE-----
T ss_pred EEeCCccH
Confidence 99876654
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.0052 Score=58.71 Aligned_cols=68 Identities=12% Similarity=0.251 Sum_probs=56.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc--cCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeEEEE
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHA--LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCS 324 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~--~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~gr~l~V~ 324 (413)
+.|.++.||..+..|+++.+|+. + .++.+|.+-.+.++ ||+|.+..||+.|.+.|... +|.|++|.-+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~enc--Pk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENC--PKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCC--CCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 67889999999999999999985 4 78899988776544 79999999999999987554 6788877543
No 184
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.58 E-value=0.004 Score=55.96 Aligned_cols=73 Identities=23% Similarity=0.275 Sum_probs=62.6
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccC--CcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTG--PLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
-++||+||-|.+|++||.+.+...| .+.+++++.++ ++|||+|..-+....++-++-|..+.|+|..-.|..+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4599999999999999999999887 46777787765 4789999999999999999999999999986666544
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0052 Score=58.84 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCC------HHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeE
Q 015069 254 TTVYVGNLSSEVT------SVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC-GKPI 321 (413)
Q Consensus 254 ~~l~V~nLp~~~t------~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~-gr~l 321 (413)
.+|+|.|+|---. ..-|..+|+++ |+|..+.++.+ +|+.|++|.+..+|..|++.|||+.|+ +++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~--gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKA--GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhh--ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 6789999985221 23467789999 99999998855 799999999999999999999999875 5666
Q ss_pred EEEe
Q 015069 322 KCSW 325 (413)
Q Consensus 322 ~V~~ 325 (413)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6653
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.48 E-value=0.0038 Score=60.08 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHh-ccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCccc---Ccc
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFS-STGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQP 114 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~-~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~---g~~ 114 (413)
+++.....+..|+|.||-...|...|+.++. ..|.|++.+| ++-+..|||.|.+.++|......|||..|- ++.
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3334556677899999999999999999999 4557887754 666779999999999999999999998875 567
Q ss_pred eEEEeccc
Q 015069 115 IKVNWAYA 122 (413)
Q Consensus 115 l~v~~~~~ 122 (413)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777653
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.29 E-value=0.031 Score=37.63 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccC-ccceEEEEeeccccEEEEEeCCHHHHHHHHHHh
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALC-VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~-~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l 311 (413)
..|+|+|++ +++.++|+.+|..|. ......|.++.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 569999997 688899999999882 1356677777774 4668999999999999764
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.12 E-value=0.032 Score=43.90 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCCcccEEEEecCCCCCC-HHHH---HHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 248 ENNPQYTTVYVGNLSSEVT-SVDL---HRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t-~e~L---~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
...++..+|.|+=|..++. .||| ...++.| |+|.+|.+.- +-.|.|.|.|...|-+|+.+++. ...|..+.+
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~f--GpI~SVT~cG-rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVF--GPIQSVTLCG-RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhc--CCcceeeecC-CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4556778999987777663 4444 4556789 9999998764 45799999999999999999876 667888999
Q ss_pred Eec
Q 015069 324 SWG 326 (413)
Q Consensus 324 ~~a 326 (413)
+|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 885
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.02 E-value=0.021 Score=48.21 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.4
Q ss_pred CHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC--CCeeCCeeEEEEecCCC
Q 015069 266 TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPIKCSWGSKP 329 (413)
Q Consensus 266 t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~l~gr~l~V~~a~~~ 329 (413)
..+.|+++|..+ +.+..+..+++=+-..|.|.+.+.|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~--~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTY--DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhc--CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 458899999999 999999999997788999999999999999999 99999999999999543
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.91 E-value=0.093 Score=40.17 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=51.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
..+.+...|.-++.++|..+.+.+. ..|..++++++ +=.++++|.+.+.|..-.+.+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455666666777788877777664 68889999988 3368999999999999999999998755
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.88 E-value=0.051 Score=42.78 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEcCCCccC----CHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQV----TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~----te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
..+.+-.||.|+=|..++ +-..|...++.||+|.+|..+- +..|.|.|.+..+|-+|+..+.. ...|..+++
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345666789887666554 3345666788999999998763 34799999999999999986665 566777777
Q ss_pred Eec
Q 015069 118 NWA 120 (413)
Q Consensus 118 ~~~ 120 (413)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 775
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.72 E-value=0.38 Score=42.86 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=107.1
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----------CCceEEEEEcCHHHHHHHH----
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----------KSSYGFVDYFDRRSAALAI---- 102 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-----------~~g~afV~F~~~~~A~~A~---- 102 (413)
+|.+.+.-..|+|.+.|+..+++-.++...|-+||+|++|.++.+. ......+-|-+.+.+-...
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 4667777888999999999999999999999999999999999865 1347899999999886544
Q ss_pred HHhCC--CcccCcceEEEecccCCC-----------------------CCCCCCCceEEEcCCCcccChHHHHh----hh
Q 015069 103 VTLNG--RHIFGQPIKVNWAYASSQ-----------------------REDTSGHFNVFVGDLSPEVTDATLFA----CF 153 (413)
Q Consensus 103 ~~l~~--~~i~g~~l~v~~~~~~~~-----------------------~~~~~~~~~l~v~nl~~~~~~~~l~~----~f 153 (413)
.+|.. ..++...|.+.+..-+-. -.....+|.|.|.=- ..+.++++.+ ++
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhh
Confidence 33332 345566676665531100 112234566776433 4443444322 22
Q ss_pred ccCCC----eeeEEEeecC--CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 015069 154 SVFPT----CSDARVMWDQ--KTGRSRGFGFVSFRNQEDAQSAINDLNG 196 (413)
Q Consensus 154 ~~~G~----v~~~~i~~d~--~~~~~~g~afV~f~~~~~A~~a~~~l~g 196 (413)
..-++ +++|.++... ...-++.||.+.|-+...|...++.+.-
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 22243 5667776432 2234678999999999999999998863
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.34 E-value=0.021 Score=48.02 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=48.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc-cCccce---EEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC---
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHA-LCVGTI---EDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG--- 318 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~-~~~G~i---~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l~g--- 318 (413)
.+|.|++||+++|++++.+.+++ + +.- ..+.-..+ -.-|||.|.+.++...-...++|+.|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l--~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWL--PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhc--ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 67999999999999999998877 5 433 33331111 2469999999999999999999987633
Q ss_pred --eeEEEEec
Q 015069 319 --KPIKCSWG 326 (413)
Q Consensus 319 --r~l~V~~a 326 (413)
.+-.|.+|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 24456665
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.29 E-value=0.16 Score=38.96 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=49.9
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
...+.+...|.-++.++|..+...+- .|..++|+++.. +-.++++|.+.++|....+.+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34445555555566677776666654 588899998764 4469999999999999999999998764
No 195
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.12 E-value=0.014 Score=57.30 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=63.5
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
|....-.+.-+|||+|+-..+..+-++.....+|-|.+++... |+|..|........|+..++...+.|..+.+.
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3333445567899999999999999999999999877665543 99999999999999999899999998887776
Q ss_pred e
Q 015069 119 W 119 (413)
Q Consensus 119 ~ 119 (413)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.03 E-value=0.078 Score=49.76 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
.+++.|.|-.+|...+..||..|+..+- .|.+++|+++.. +-..++.|.+.++|....+.+||+.|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3478899999999999999999998765 699999999763 4479999999999999999999998874
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.92 E-value=0.16 Score=36.25 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=39.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC
Q 015069 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA 313 (413)
Q Consensus 255 ~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g 313 (413)
.||--..|..+...||.++|++| |.|. |..+.| ..|||...+.+.|..+++.++-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspf--G~I~-VsWi~d-TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPF--GQIY-VSWIND-TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCC--CCEE-EEEECT-TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccC--CcEE-EEEEcC-CcEEEEeecHHHHHHHHHHhcc
Confidence 34444499999999999999999 6664 444444 5799999999999999988753
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.84 E-value=0.013 Score=52.91 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=61.8
Q ss_pred ceEEEcCCCcccChHHH---HhhhccCCCeeeEEEeecCC--CCC-cccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 133 FNVFVGDLSPEVTDATL---FACFSVFPTCSDARVMWDQK--TGR-SRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l---~~~f~~~G~v~~~~i~~d~~--~~~-~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
+-+||-+|+.....+++ .+.|..||.|.++.+..+.. .+. ...-++|+|...++|.+||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 34788889887655544 36888999999999887652 111 1122899999999999999999999999999887
Q ss_pred EEccCCC
Q 015069 207 NWAAKGA 213 (413)
Q Consensus 207 ~~~~~~~ 213 (413)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7765543
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.81 E-value=0.048 Score=39.69 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=46.3
Q ss_pred EEEEeCCHHHHHHHHHHhCC-ceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccE
Q 015069 177 GFVSFRNQEDAQSAINDLNG-KWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTT 255 (413)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g-~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
|+|+|.+++-|.+.++.-.- ..++++.+.|.-..-.......- .-......++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCCE
Confidence 68999999999999983221 23566666664331111100000 0011123378
Q ss_pred EEEecCCCCCCHHHHHHHhhcc
Q 015069 256 VYVGNLSSEVTSVDLHRHFHAL 277 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~ 277 (413)
|.|.|||...++|+|++.++-|
T Consensus 55 Vlvsgip~~l~ee~l~D~LeIh 76 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLEIH 76 (88)
T ss_pred EEEeCCCCCCChhhheeeEEEE
Confidence 9999999999999999887643
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.64 E-value=0.028 Score=52.96 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCccC-CHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 45 STCRSVYVGNIHPQV-TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~-te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.+++.+-+.-.|... +..+|...|-+||.|..|.+-.. .-.|.|.|.+..+|.+|.. .++..|+++.|+|.|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 455667777777775 56899999999999998888443 3479999999999999986 8999999999999998775
Q ss_pred C
Q 015069 124 S 124 (413)
Q Consensus 124 ~ 124 (413)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.61 E-value=0.052 Score=39.51 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=46.5
Q ss_pred EEEEEcCHHHHHHHHHHhC-CCcccCcceEEEecccCC------CCCCCCCCceEEEcCCCcccChHHHHhhhc
Q 015069 88 GFVDYFDRRSAALAIVTLN-GRHIFGQPIKVNWAYASS------QREDTSGHFNVFVGDLSPEVTDATLFACFS 154 (413)
Q Consensus 88 afV~F~~~~~A~~A~~~l~-~~~i~g~~l~v~~~~~~~------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 154 (413)
|+|.|.++.-|.+.++.-. ...+.+..+.|....-.. .-......++|.|+|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999996322 133556655555433211 123345678899999999999999988654
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.58 E-value=0.015 Score=52.48 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=62.6
Q ss_pred CeEEEcCCCccCCHHHHH---HHHhccCCcceEEEEecCC-------CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 48 RSVYVGNIHPQVTNALLQ---EVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~---~~f~~~G~v~~v~i~~~~~-------~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.-+||-+|+..+..+++. ++|.+||.|..|.+.++.+ .--+||.|...++|..||...+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 458999999887666665 4899999999888877552 124899999999999999999999999999888
Q ss_pred EecccC
Q 015069 118 NWAYAS 123 (413)
Q Consensus 118 ~~~~~~ 123 (413)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 876544
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.52 E-value=0.075 Score=44.68 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=50.6
Q ss_pred CCceEEEcCCCcccChHHHHhhhcc-CCCe---eeEEEeecCCC-C-CcccEEEEEeCCHHHHHHHHHHhCCceecC---
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSV-FPTC---SDARVMWDQKT-G-RSRGFGFVSFRNQEDAQSAINDLNGKWLGN--- 201 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~~~i~~d~~~-~-~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--- 201 (413)
...+|.|++||+.++++++.+.++. ++.- ..+.-.....+ + ..-..|||.|.+.++....+..++|..+-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999998887 5655 23321122111 1 123459999999999999999999987632
Q ss_pred --eEEEEEEccC
Q 015069 202 --RQIRCNWAAK 211 (413)
Q Consensus 202 --~~i~v~~~~~ 211 (413)
..-.|+++.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2445666644
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.34 E-value=0.12 Score=49.82 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhcc--CCCeeeEEEeecCCCCCc
Q 015069 96 RSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV--FPTCSDARVMWDQKTGRS 173 (413)
Q Consensus 96 ~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~~~i~~d~~~~~~ 173 (413)
+-...++++.-+..++.+-.+|+.. -..+.|.++-||..+-.|+++.||+. +-.+.+|..-.+.
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~---------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----- 213 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPN---------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----- 213 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccC---------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----
Confidence 3344555555556666666666532 23356889999999999999999964 5677777776442
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCC--ceecCeEEEE
Q 015069 174 RGFGFVSFRNQEDAQSAINDLNG--KWLGNRQIRC 206 (413)
Q Consensus 174 ~g~afV~f~~~~~A~~a~~~l~g--~~l~g~~i~v 206 (413)
-=||+|++..||+.|.+.|.. +.|.|++|..
T Consensus 214 --nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 214 --NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred --ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 269999999999999988853 3466665543
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.11 Score=46.24 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=58.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCe-eEEEEecCCCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK-PIKCSWGSKPT 330 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr-~l~V~~a~~~~ 330 (413)
.-|.|.+.|+.-. .-|..+|+.| |.|.+....++-.+-+|.|.+.-+|++|+.+ ||+.|+|- -|-|+-|..+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~c--G~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRC--GEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhh--CeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 4577778887543 4678899999 9999988886677999999999999999998 99999875 45677765544
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.83 E-value=0.043 Score=55.38 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee--CCeeEEEEecCCCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL--CGKPIKCSWGSKPT 330 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l--~gr~l~V~~a~~~~ 330 (413)
.+..+.|.+-+.+-..|..+|+.| |.|.+.+.+++-..|.|+|...+.|..|+++|+|+++ -|-+.+|.+++.-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~y--g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDY--GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhh--cchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 345566677788889999999999 9999999999999999999999999999999999974 68899999998654
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.78 E-value=0.23 Score=44.20 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=55.4
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCc-ceEEEecccC
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ-PIKVNWAYAS 123 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~-~l~v~~~~~~ 123 (413)
=|-|-++|.. .-.-|...|.+||+|.+... ..+..+-+|.|.+.-+|.+||. .||..|.|. -|-|+.|..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~--~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT--PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeec--CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 3777788865 45678899999999875544 4556799999999999999996 899999886 4566666543
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.35 E-value=4.6 Score=36.22 Aligned_cols=176 Identities=9% Similarity=0.109 Sum_probs=99.3
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecC-------CCCCcccEEEEEeCCHHHHHHHHHH----hC-
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-------KTGRSRGFGFVSFRNQEDAQSAIND----LN- 195 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~-------~~~~~~g~afV~f~~~~~A~~a~~~----l~- 195 (413)
+.-.+|.|...|+..+++--.+...|-+||+|++|.++.+. ...+......+-|-+.+.+-..... |.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456789999999999888889999999999999999764 1123345688899998877655432 22
Q ss_pred -CceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHH-HHHH
Q 015069 196 -GKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD-LHRH 273 (413)
Q Consensus 196 -g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~-L~~~ 273 (413)
...+....+.+.|..-+......... ......... .......-......+.|.|.=- ..+.+++ +.+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~-~~~~~~~~~--------~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~k 160 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPND-EEADFSDYL--------VASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKK 160 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccc-cccchhhHH--------hhhhhheeecCCcceEEEEEec-CccchhHHHHHh
Confidence 13456667777665432211111000 000000000 0000000011122366776433 4443333 3332
Q ss_pred h---hccC--ccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCC
Q 015069 274 F---HALC--VGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNA 313 (413)
Q Consensus 274 F---~~~~--~G~i~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~g 313 (413)
+ ..-+ .--+++|.++.- +.||.++|-+..-|...+..+.-
T Consensus 161 L~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 161 LPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred hhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2 1110 015777777642 68999999999999998887653
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.17 E-value=0.27 Score=41.53 Aligned_cols=62 Identities=23% Similarity=0.164 Sum_probs=46.6
Q ss_pred ChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecCeEEEEEEccCC
Q 015069 145 TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN--GKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 145 ~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~l~g~~i~v~~~~~~ 212 (413)
..+.|+++|..++++.....++ +-+-..|.|.+.++|.+|...|+ +..+.|..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999998888883 34569999999999999999999 89999999999988443
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.12 E-value=0.48 Score=32.48 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 264 EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 264 ~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
.++-++++..+..| .-.+|+ .++--=||.|.+.++|.++....||..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y---~~~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY---RWDRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC---CcceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999 334444 34323479999999999999999999988877754
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.93 E-value=0.33 Score=45.79 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=58.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
...|+|-.+|..+|-.||..|+..+. -.|.+++++|| +=..+|.|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~-~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI-KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh-hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57799999999999999999999886 68999999987 3457999999999999999999997754
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.28 E-value=0.66 Score=32.74 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHhhccC---ccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 263 SEVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 263 ~~~t~e~L~~~F~~~~---~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
..++..+|..++...+ ...|-.|++..+ |+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3778888888887662 135667777666 89999865 5889999999999999999999864
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.21 E-value=0.11 Score=52.65 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=60.8
Q ss_pred EEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCccc--CcceEEEeccc
Q 015069 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYA 122 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~--g~~l~v~~~~~ 122 (413)
..+.|.+-..+..-|..+|++||.|.+.+.+++-+ .|.|+|.+.+.|..|++.|.|+... |-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44556677788899999999999999999877655 8999999999999999999998754 77888888764
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.71 E-value=0.14 Score=50.43 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 244 EDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 244 ~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
.+.....++..++||+|+-..+..+-++.+...+ |.|.++.... |+|+.|.......+|+..++-..++|..+.+
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~--g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKS--GFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhC--Ccchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3444556677899999999999999999999999 8898886655 9999999999999999999999999998877
Q ss_pred Eec
Q 015069 324 SWG 326 (413)
Q Consensus 324 ~~a 326 (413)
.-.
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 553
No 215
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=90.80 E-value=0.39 Score=39.61 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCC-----HHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCe-eEEEEecC
Q 015069 254 TTVYVGNLSSEVT-----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGK-PIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t-----~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr-~l~V~~a~ 327 (413)
..+.+.+++..+- ......+|..| -+..-.+++++.+...|.|.+.+.|..|...++++.|.|+ .+++-++-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~--n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQI--NEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhh--CcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 4477777776542 23456667777 6666677788888889999999999999999999999998 88888886
Q ss_pred CCCC
Q 015069 328 KPTP 331 (413)
Q Consensus 328 ~~~~ 331 (413)
....
T Consensus 89 ~~~~ 92 (193)
T KOG4019|consen 89 PGHP 92 (193)
T ss_pred CCCc
Confidence 5443
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.80 E-value=0.4 Score=39.23 Aligned_cols=106 Identities=8% Similarity=-0.046 Sum_probs=71.8
Q ss_pred cCCHHHHHHHHhc-cCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCCCC---CCCc
Q 015069 58 QVTNALLQEVFSS-TGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHF 133 (413)
Q Consensus 58 ~~te~~l~~~f~~-~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~---~~~~ 133 (413)
..+-..|...+.. ++....+.+..- ..++..+.|.+++++.+++. .....+.|..+.++.-.+....... .-..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccch
Confidence 3566667766654 233223333322 45799999999999999996 5556677877777755543322221 1234
Q ss_pred eEEEcCCCcc-cChHHHHhhhccCCCeeeEEEe
Q 015069 134 NVFVGDLSPE-VTDATLFACFSVFPTCSDARVM 165 (413)
Q Consensus 134 ~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~ 165 (413)
-|.|.|||.. .+++-++.+-+.+|.+.++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 5889999987 6778888999999999877654
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.59 E-value=0.64 Score=32.83 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHhccCCcc-----eEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 58 QVTNALLQEVFSSTGPLE-----GCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 58 ~~te~~l~~~f~~~G~v~-----~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.++..+|..++...+.|. .|.| ...|+||+-.. +.|..++..|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478899999998765443 4544 34589998655 5899999999999999999999853
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=1.8 Score=42.28 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCCCcccEEEEecCCC-CCCHHHHHHHhhccC--ccceEEEEeecc----------------------------------
Q 015069 248 ENNPQYTTVYVGNLSS-EVTSVDLHRHFHALC--VGTIEDVRVQRD---------------------------------- 290 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~~--~G~i~~v~~~~~---------------------------------- 290 (413)
.....+++|-|-||+. .+..++|.-+|+.|+ .|.|.+|.|.++
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 4456678999999998 778999999998773 278999988632
Q ss_pred -----------------c--cEEEEEeCCHHHHHHHHHHhCCCeeCCe--eEEEEe
Q 015069 291 -----------------K--GFGFVRYSTHPEAALAIQMGNARILCGK--PIKCSW 325 (413)
Q Consensus 291 -----------------k--g~afV~f~~~~~A~~A~~~l~g~~l~gr--~l~V~~ 325 (413)
. =||.|+|.+.+.|......++|.++... .|-++|
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 1689999999999999999999998654 444444
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.80 E-value=2.2 Score=41.81 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCcc-CCHHHHHHHHhcc----CCcceEEEEecC------------CC---------------------
Q 015069 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSST----GPLEGCKLIKKD------------KS--------------------- 85 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~-~te~~l~~~f~~~----G~v~~v~i~~~~------------~~--------------------- 85 (413)
..++++|-|.||.|+ +...||.-+|+.| |.|.+|.|.... ..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556788999999998 8899999999976 578899887521 00
Q ss_pred ------------------ceEEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecc
Q 015069 86 ------------------SYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (413)
Q Consensus 86 ------------------g~afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~ 121 (413)
-||.|+|.+++.|....+.++|..+.. ..+-++|-+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 179999999999999999999999874 455556544
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.30 E-value=3.2 Score=28.47 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 58 QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 58 ~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.++-+|++..++.|+-. +|..++. | =||.|.|..+|+++....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 37889999999999743 2443443 2 488899999999999999998887766554
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.34 E-value=3.2 Score=38.70 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHH
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~ 103 (413)
-.+.|-|.++|.....+||...|+.|+ .-.+|+|+.+. .||-.|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 456799999999999999999999997 35677787766 69999999999999995
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.92 E-value=4 Score=36.23 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=39.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHH
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRR 96 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~ 96 (413)
.-..-|+++|||.++.-.||+.-+.+.|.+ -..|-.....|-||+.|.|..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 334559999999999999999999988743 244544667788999998753
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.48 E-value=5.6 Score=35.35 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=41.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHH
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHP 302 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~ 302 (413)
+...-|+++||+.++.-.||+..+.+-+ ....++.+.-..|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~-~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRE-CTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcC-CCceeEeeecCCcceeEecCCcc
Confidence 3446699999999999999999999873 45667777777899999997654
No 224
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.82 E-value=2 Score=42.52 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 015069 5 RLKQQTMMQQQSLYQY 20 (413)
Q Consensus 5 ~~~qq~~~~qq~~~~~ 20 (413)
|+|||+|+|||+++-+
T Consensus 71 ~~~~~~~~~~~~~~~~ 86 (1179)
T KOG3648|consen 71 QLQQQQQQQQQQQQLQ 86 (1179)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3444444444433333
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.17 E-value=1.4 Score=38.77 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=51.9
Q ss_pred cEEEEecCCCC------------CCHHHHHHHhhccCccceEEEEeecc----------------ccE---------EEE
Q 015069 254 TTVYVGNLSSE------------VTSVDLHRHFHALCVGTIEDVRVQRD----------------KGF---------GFV 296 (413)
Q Consensus 254 ~~l~V~nLp~~------------~t~e~L~~~F~~~~~G~i~~v~~~~~----------------kg~---------afV 296 (413)
.+|++.+||-. -+++.|+..|+.| |.|..|.|+-- +|| |||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf--g~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF--GEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHh--ccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 56777777632 3578899999999 99999988521 233 347
Q ss_pred EeCCHHHHHHHHHHhCCCee----CC----eeEEEEecCCCC
Q 015069 297 RYSTHPEAALAIQMGNARIL----CG----KPIKCSWGSKPT 330 (413)
Q Consensus 297 ~f~~~~~A~~A~~~l~g~~l----~g----r~l~V~~a~~~~ 330 (413)
+|.....-..|+..|.|..+ +| -.++|.|.++..
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 77777777778888877743 33 367787776543
No 226
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=72.71 E-value=28 Score=32.83 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCCCeEEEcCCCcc-CCHHHHHHHHhcc----CCcceEEEEec
Q 015069 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSST----GPLEGCKLIKK 82 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~-~te~~l~~~f~~~----G~v~~v~i~~~ 82 (413)
+.++.+|-|-||.|+ +...||...|+.| |.+..|.|.+.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 566778999999998 8889999988865 57888888654
No 227
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=1.9 Score=42.65 Aligned_cols=18 Identities=33% Similarity=0.213 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 015069 2 QQHRLKQQTMMQQQSLYQ 19 (413)
Q Consensus 2 ~q~~~~qq~~~~qq~~~~ 19 (413)
||||+|||+|++.|..+.
T Consensus 73 ~~~~~~~~~~~~~~P~~~ 90 (1179)
T KOG3648|consen 73 QQQQQQQQQQQQLQPPQP 90 (1179)
T ss_pred HHHHHHHHHHHhhCCCCC
Confidence 344444444444444433
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=70.65 E-value=3 Score=33.95 Aligned_cols=85 Identities=11% Similarity=-0.025 Sum_probs=56.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcc
Q 015069 174 RGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQY 253 (413)
Q Consensus 174 ~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (413)
.++..+.|.+++++.++++ .....++|..+.+..-.+....... ......
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~-----------------------------~~~~~~ 104 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV-----------------------------KFEHIP 104 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc-----------------------------ceeccc
Confidence 5789999999999999987 4455567766665433221110000 000011
Q ss_pred cEEEEecCCCC-CCHHHHHHHhhccCccceEEEEeecc
Q 015069 254 TTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 254 ~~l~V~nLp~~-~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
.-|.|.|||.. .+++-|+.+.+.+ |.+.+++....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~i--G~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKI--GEPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhc--CCeEEEEcCCC
Confidence 33678899985 5788899999999 99999987644
No 229
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.49 E-value=4.8 Score=37.64 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCcccCCCCCCCccCCCCCCCCC
Q 015069 10 TMMQQQSLYQYHPSLLAAPQIEPILSGNLPPRFD 43 (413)
Q Consensus 10 ~~~~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (413)
+|.||++.|..+|++.-...+...++++.||...
T Consensus 235 pQ~qq~q~q~~~pqqr~~~~~~r~~as~~~P~~~ 268 (505)
T COG5624 235 PQFQQGQKQVLSPQQRFLHGMERYEASGMPPPAE 268 (505)
T ss_pred HHHHHHHHHhhChHhhhhcchhhhhccCCCCCCc
Confidence 3333333334445544444455555555555443
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.16 E-value=6.9 Score=30.33 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=31.5
Q ss_pred eEEEcCCCccC---------CHHHHHHHHhccCCcceEEEEecCC--CceEEEEEcCHHHH-HHHHHHhCC
Q 015069 49 SVYVGNIHPQV---------TNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSA-ALAIVTLNG 107 (413)
Q Consensus 49 tv~V~nLp~~~---------te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A-~~A~~~l~~ 107 (413)
++.|-|+|... +.++|++.|+.|.+++ |+.+.++. .|+++|+|.+.-.- ..|+. |+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH-HHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH-HHH
Confidence 56777876543 5678999999999875 65665543 68999999875443 44443 443
No 231
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=64.90 E-value=6.7 Score=42.04 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.5
Q ss_pred eEEEEE
Q 015069 87 YGFVDY 92 (413)
Q Consensus 87 ~afV~F 92 (413)
.+-..|
T Consensus 1929 qgs~~y 1934 (2131)
T KOG4369|consen 1929 QGSNLY 1934 (2131)
T ss_pred cccccc
Confidence 344444
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.28 E-value=11 Score=29.33 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=26.2
Q ss_pred EEEEecCCCC---------CCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCH-HHHHHHHH
Q 015069 255 TVYVGNLSSE---------VTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTH-PEAALAIQ 309 (413)
Q Consensus 255 ~l~V~nLp~~---------~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~-~~A~~A~~ 309 (413)
++.|-|++.. .+.++|++.|+.|+.++|..+.-... +|+++|+|... ..-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4667777543 35688999999994333332221121 68999999853 33444443
No 233
>PF14893 PNMA: PNMA
Probab=64.26 E-value=4.6 Score=37.55 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=34.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhc----cCCcc--eEEEEecCCCceEEEEEcCH
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSS----TGPLE--GCKLIKKDKSSYGFVDYFDR 95 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~----~G~v~--~v~i~~~~~~g~afV~F~~~ 95 (413)
...+.|.|.|||.+++++||.+.+.. .|... .-.+.++.+...|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 44678999999999999999987764 44321 11112223455789988653
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=59.03 E-value=11 Score=35.31 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=47.8
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEec-C-----CCceEEEEEcCHHHHHHHHHHhCCCccc
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKK-D-----KSSYGFVDYFDRRSAALAIVTLNGRHIF 111 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~-~-----~~g~afV~F~~~~~A~~A~~~l~~~~i~ 111 (413)
...|.|.+||...++++|.+-...+-+ |.-..+... . ..+.|||.|.+.++.......++|+.|-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457999999999999999998887653 322222211 1 1457999999999988888888887654
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.19 E-value=22 Score=33.42 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=46.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHH
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQM 310 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~ 310 (413)
-.+.|-|.++|...-.+||...|+.|+ +.=-+|.++.| -.||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq-~kgfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQ-NKGFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhh-cCCceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 347788999999999999999999995 44455666655 4789999999999999875
No 236
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=57.39 E-value=40 Score=31.80 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCCCcccEEEEecCCC-CCCHHHHHHHhhccC--ccceEEEEeecc---------------------------------
Q 015069 247 PENNPQYTTVYVGNLSS-EVTSVDLHRHFHALC--VGTIEDVRVQRD--------------------------------- 290 (413)
Q Consensus 247 ~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~~--~G~i~~v~~~~~--------------------------------- 290 (413)
+..+.+..+|-|-||+. .+...+|...|+.|+ .|.+..|.|.++
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 34466778899999997 778899999998763 278887777421
Q ss_pred -------------------cc-------------------EEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEec
Q 015069 291 -------------------KG-------------------FGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 326 (413)
Q Consensus 291 -------------------kg-------------------~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a 326 (413)
+| ||.|++.+...+......++|.++.. ..+-+.|.
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 12 68899999999999999999987754 34444443
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.77 E-value=40 Score=24.43 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=42.8
Q ss_pred EEEcCCCccCCHHHHHHHHhc-cC-CcceEEEEecCC-CceEEEEEcCHHHHHHHHHHh
Q 015069 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTL 105 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~-~G-~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l 105 (413)
-|.--.+...+..+|++.++. || .|.+|..+..+. ..-|||.+...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455567788999999999986 56 577777766543 357999999999998876543
No 238
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=55.59 E-value=23 Score=24.49 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=44.7
Q ss_pred HHHHhhhccCC-CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 147 ~~l~~~f~~~G-~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++|.+-|...| +|..+.-+..+.++.....-||+.....+...+ ++=+.+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777787777 677777777766777778888888877653322 3445678888888876544
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.87 E-value=17 Score=34.10 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=47.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARIL 316 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l 316 (413)
..+.|++||+..++++|.+-..++- -.+....+.+. .+.++|.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6799999999999999999888872 34444444422 46789999999997777777788764
No 240
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=50.10 E-value=19 Score=30.04 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCeEEEcCCCccCCH-----HHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCc-ceEEEec
Q 015069 47 CRSVYVGNIHPQVTN-----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ-PIKVNWA 120 (413)
Q Consensus 47 ~~tv~V~nLp~~~te-----~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~-~l~v~~~ 120 (413)
..++.+++++..+-. .....+|..|-+.....+++ +.+.--|.|.+++.|..|...+++..|.|+ .++.-++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 346788888876422 22334666665554444433 445788999999999999999999999988 6666665
Q ss_pred cc
Q 015069 121 YA 122 (413)
Q Consensus 121 ~~ 122 (413)
.+
T Consensus 88 Q~ 89 (193)
T KOG4019|consen 88 QP 89 (193)
T ss_pred cC
Confidence 43
No 241
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=49.94 E-value=8.7 Score=33.09 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=2.9
Q ss_pred hhHHHH
Q 015069 2 QQHRLK 7 (413)
Q Consensus 2 ~q~~~~ 7 (413)
||||+|
T Consensus 8 QqHQqQ 13 (230)
T PF06752_consen 8 QQHQQQ 13 (230)
T ss_pred HHHHHH
Confidence 455544
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=49.50 E-value=61 Score=23.01 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=41.8
Q ss_pred EEEcCCCccCCHHHHHHHHhc-cC-CcceEEEEecCC-CceEEEEEcCHHHHHHHHHH
Q 015069 50 VYVGNIHPQVTNALLQEVFSS-TG-PLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVT 104 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~-~G-~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~ 104 (413)
-|+-..+.+.+..+|++.++. || .|..|..+..+. -.-|||.+...++|.+.-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 566677889999999999886 56 566776665543 34699999999988887654
No 243
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.12 E-value=28 Score=23.98 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=43.5
Q ss_pred HHHHhhhccCC-CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 147 ATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 147 ~~l~~~f~~~G-~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++|.+-|.+.| ++..+.-+..+.++.+-..-+|+.....+-.. -++=+.|+|+.+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46777888888 67888877777767777778888776643333 23445578888888766443
No 244
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=48.05 E-value=6 Score=36.07 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCccch
Q 015069 399 SGFQNV 404 (413)
Q Consensus 399 ~~~~~~ 404 (413)
..||..
T Consensus 407 sswhtl 412 (423)
T PF02166_consen 407 SSWHTL 412 (423)
T ss_dssp ------
T ss_pred cccccc
Confidence 445543
No 245
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=46.94 E-value=11 Score=40.31 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.7
Q ss_pred CCCccCCCCCC
Q 015069 30 IEPILSGNLPP 40 (413)
Q Consensus 30 ~~~~~~~~~~~ 40 (413)
+.++++...|.
T Consensus 1461 ~vQt~s~p~p~ 1471 (1517)
T KOG1883|consen 1461 MVQTMSPPYPG 1471 (1517)
T ss_pred eeeecCCCCCc
Confidence 34444444443
No 246
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.71 E-value=38 Score=22.79 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHHHhhhccCCCeeeEEE
Q 015069 147 ATLFACFSVFPTCSDARV 164 (413)
Q Consensus 147 ~~l~~~f~~~G~v~~~~i 164 (413)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976554
No 247
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=45.65 E-value=93 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=35.2
Q ss_pred HHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhC
Q 015069 267 SVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGN 312 (413)
Q Consensus 267 ~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~ 312 (413)
.+.++++++.+| |+++++.+... -....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 567889999997 99999988765 3467889999998887665443
No 248
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.33 E-value=72 Score=23.09 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=42.6
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHh
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l 311 (413)
-|+..++...+..+|++.++..-.-.|.+|+...- ..-|||.+..-++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 56667899999999999999742257888876543 346999999988888775543
No 249
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=44.42 E-value=30 Score=26.39 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCC--cccCcceEEEecccCCC-CC-CC-
Q 015069 55 IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNWAYASSQ-RE-DT- 129 (413)
Q Consensus 55 Lp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~--~i~g~~l~v~~~~~~~~-~~-~~- 129 (413)
||+.+ +.|.++|+.=|.|.+|..+..-... .|+-.++|. .++|. |++.-.....+ +. ..
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypdn-------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPDN-------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCCc-------------hhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 55553 4689999999999888665432211 222223332 13333 33332221111 00 01
Q ss_pred CCCceEEEcCCCcccChHHHHhhhcc---CCCeeeEEEeecCCCCCcccEEEEEeCCH
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSV---FPTCSDARVMWDQKTGRSRGFGFVSFRNQ 184 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~---~G~v~~~~i~~d~~~~~~~g~afV~f~~~ 184 (413)
..+..+| -|+.++..+++++|+. |--|..-.+.+|--..-+-..||..|...
T Consensus 75 sgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1112222 3678999999999975 33344444454422223445688877655
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.10 E-value=41 Score=31.31 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=39.3
Q ss_pred EEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhcc
Q 015069 88 GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSV 155 (413)
Q Consensus 88 afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 155 (413)
|||.|.+..+|..|.+.+.... ++.+.++.+.+.. .|.=.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655443 3556777665443 2666677666666666665543
No 251
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=43.91 E-value=26 Score=18.89 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=3.4
Q ss_pred ChhHHHH
Q 015069 1 MQQHRLK 7 (413)
Q Consensus 1 ~~q~~~~ 7 (413)
|||+|--
T Consensus 6 MqqRQws 12 (27)
T PF04624_consen 6 MQQRQWS 12 (27)
T ss_pred HHHHHhh
Confidence 4555433
No 252
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.88 E-value=92 Score=20.45 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=43.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCH----HHHHHHHHH
Q 015069 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTH----PEAALAIQM 310 (413)
Q Consensus 255 ~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~----~~A~~A~~~ 310 (413)
++.|.||.=.-....|...+... -.|.++.+....+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~--~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKL--PGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcC--CCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 46777888777788999999999 8899999988889999999754 455556654
No 253
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.69 E-value=23 Score=31.41 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCeEEEcCCCccC------------CHHHHHHHHhccCCcceEEEEec---------CC-----Cce---------EEEE
Q 015069 47 CRSVYVGNIHPQV------------TNALLQEVFSSTGPLEGCKLIKK---------DK-----SSY---------GFVD 91 (413)
Q Consensus 47 ~~tv~V~nLp~~~------------te~~l~~~f~~~G~v~~v~i~~~---------~~-----~g~---------afV~ 91 (413)
+.||++.+||..| +++-|+..|..||.|..|.|... +. .|| |||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4589999999754 67889999999999887766531 11 122 5677
Q ss_pred EcCHHHHHHHHHHhCCCccc
Q 015069 92 YFDRRSAALAIVTLNGRHIF 111 (413)
Q Consensus 92 F~~~~~A~~A~~~l~~~~i~ 111 (413)
|.....-..|+..|.|..+.
T Consensus 229 fmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHhHHHHHHHHhcchHH
Confidence 76666667777777776653
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=43.54 E-value=86 Score=22.26 Aligned_cols=56 Identities=14% Similarity=0.050 Sum_probs=42.0
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHh
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l 311 (413)
-|+..++...+..+|+..++..-.-+|.+|+...- ..-|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 66777899999999999998742257777766543 346999999888887765543
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.58 E-value=97 Score=20.34 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=41.0
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCH----HHHHHHHH
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDR----RSAALAIV 103 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~----~~A~~A~~ 103 (413)
|+.|.||-..--...|.+.+...-.|.++.+ +-..+.+-|.|... +...++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~v--d~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKV--DLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEE--ETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEE--ECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 5788888888888999999999888888877 44456888888755 45555554
No 256
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=40.44 E-value=1e+02 Score=22.55 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhC
Q 015069 61 NALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (413)
Q Consensus 61 e~~l~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~ 106 (413)
.+.++++++..| .+.++.+...+-.-...+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456778888887 6888888877777789999999999988875443
No 257
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=40.04 E-value=1.2e+02 Score=21.22 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.6
Q ss_pred HHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhC
Q 015069 62 ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (413)
Q Consensus 62 ~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~ 106 (413)
.++.+.+.++| +..+.+.-....++.|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777888888 444555333336789998889999999887664
No 258
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.31 E-value=4.4 Score=39.57 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=51.5
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~ 202 (413)
+++++++|+++.++-.+|..+++.+--+..+-+..+..-.+-..+++|.|+..-.-..|+.+|+++.+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 35699999999999999999999885554444332222234456788999988777888888888766433
No 259
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=37.80 E-value=44 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCHHHHHHHHhccCCcceEEEEecCC--CceEEE
Q 015069 59 VTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFV 90 (413)
Q Consensus 59 ~te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV 90 (413)
.-+.+|.++|-+-.+|+++.+...|. +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 34567888888878899999988764 778887
No 260
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=34.28 E-value=1.3e+02 Score=19.24 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHHhccC-CcceEEEEecC-CCceEEEEEcCHHHHHHHH
Q 015069 61 NALLQEVFSSTG-PLEGCKLIKKD-KSSYGFVDYFDRRSAALAI 102 (413)
Q Consensus 61 e~~l~~~f~~~G-~v~~v~i~~~~-~~g~afV~F~~~~~A~~A~ 102 (413)
-.++.+.+.+.| .|..+.+.... ......+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356777888877 67777776654 4567778888888777765
No 261
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=34.04 E-value=1.6e+02 Score=20.60 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=32.2
Q ss_pred HHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHh
Q 015069 268 VDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 268 e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l 311 (413)
+++.+.+..+ | +....+.-. -++.|+-+.+.+.+.++.+.+
T Consensus 37 ~~~~~~~~~~--G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEEN--G-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHT--T-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC--C-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 4677777888 6 667777777 678888898999988888765
No 262
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.87 E-value=50 Score=31.21 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=3.9
Q ss_pred HHHHHHHhhc
Q 015069 267 SVDLHRHFHA 276 (413)
Q Consensus 267 ~e~L~~~F~~ 276 (413)
.++|+.-..+
T Consensus 460 ~d~I~~s~rk 469 (505)
T COG5624 460 DDIIHMSYRK 469 (505)
T ss_pred HHHHHHHHHh
Confidence 3444433333
No 263
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=33.33 E-value=56 Score=30.44 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=7.5
Q ss_pred CHHHHHHHHhcc
Q 015069 60 TNALLQEVFSST 71 (413)
Q Consensus 60 te~~l~~~f~~~ 71 (413)
.+..+.+++.++
T Consensus 97 ~~rt~~~~laeh 108 (475)
T KOG3982|consen 97 VFRTVVEFLAEH 108 (475)
T ss_pred hHHHHHHHHHhC
Confidence 345566777765
No 264
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=33.06 E-value=13 Score=35.69 Aligned_cols=17 Identities=41% Similarity=0.306 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHHh
Q 015069 3 QHRLKQQTMMQQQSLYQ 19 (413)
Q Consensus 3 q~~~~qq~~~~qq~~~~ 19 (413)
|+|++.|||.|||..++
T Consensus 120 ~~qqq~~qqs~qq~~~q 136 (775)
T KOG1151|consen 120 QQQQQPQQQSQQQSAQQ 136 (775)
T ss_pred hhhhCchhhhhhccccc
Confidence 33444344444444433
No 265
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.55 E-value=98 Score=22.27 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=24.2
Q ss_pred ceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCC
Q 015069 281 TIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNAR 314 (413)
Q Consensus 281 ~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~ 314 (413)
.|.++....+ +||-||+=.+..+..+|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5677766665 999999999999999998865543
No 266
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.45 E-value=65 Score=26.88 Aligned_cols=56 Identities=18% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-----CceEEEEEcCHHHHHHHHHH
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVT 104 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-----~g~afV~F~~~~~A~~A~~~ 104 (413)
.-.|++|.. |.+..-++|.++-+ |.+..|.+-+... +|--||.|.+.+.|..+++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 344778877 44445566666665 6777777765433 57789999999999998863
No 267
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.39 E-value=63 Score=30.05 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 294 GFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 294 afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
|||+|++..+|..|.+.+.... ++.+++..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999655544 345566555
No 268
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.58 E-value=1.8e+02 Score=19.34 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=32.9
Q ss_pred CHHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCe
Q 015069 266 TSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARI 315 (413)
Q Consensus 266 t~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~ 315 (413)
.-.++.++|...+ ..|.++..... ++.-.+.+.+.+.|.++++. +|..
T Consensus 14 ~La~v~~~l~~~~-inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAG-INIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCC-CCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3467888888875 68888876544 44555667777777877776 5554
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.85 E-value=84 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=23.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 292 GFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 292 g~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
.+.+|.|.+..+|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 467899999999999999887766654443
No 270
>PRK11901 hypothetical protein; Reviewed
Probab=27.84 E-value=1.7e+02 Score=27.14 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEE--EEeCCHHHHHHHHHHhCCc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGF--VSFRNQEDAQSAINDLNGK 197 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~af--V~f~~~~~A~~a~~~l~g~ 197 (413)
....+|-|..+ -+++.|..|.+.++ +..+++......|+.. |.. -.|.+.++|..|++.|-..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34456666665 44777888877775 4556666554444432 443 3699999999999988643
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.53 E-value=61 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC 77 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v 77 (413)
+.....+++|+-|+|..++++.|..+.+..|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455667889999999999999999999999855433
No 272
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=27.14 E-value=29 Score=32.31 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=5.8
Q ss_pred HHHHHHHHhc
Q 015069 61 NALLQEVFSS 70 (413)
Q Consensus 61 e~~l~~~f~~ 70 (413)
.+.|.++++.
T Consensus 341 n~qi~qlykd 350 (503)
T PF03249_consen 341 NEQIIQLYKD 350 (503)
T ss_pred cHHHHHHHHH
Confidence 4556666654
No 273
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.05 E-value=14 Score=36.32 Aligned_cols=68 Identities=9% Similarity=0.045 Sum_probs=48.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
..++|+++|++++++-.+|..+++.+ .-+..+-+... ..+..|+|+---.-..|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i--~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGI--PGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccC--chheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45789999999999999999999998 55555555433 3456788875555555666667766655444
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.97 E-value=1.2e+02 Score=21.74 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=23.6
Q ss_pred CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC
Q 015069 73 PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (413)
Q Consensus 73 ~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~ 107 (413)
.|.++ +.++.-+||-|||=.+..++.+|++.+.+
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 45555 44556799999999999999999975543
No 275
>PF14893 PNMA: PNMA
Probab=26.21 E-value=67 Score=30.03 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=31.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec-----c--ccEEEEEeCCH
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-----D--KGFGFVRYSTH 301 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~-----~--kg~afV~f~~~ 301 (413)
.+.|.|.+||.++++++|.+.+..-- -.+-..++.. + ...++|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l-~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAAL-SPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhh-cccccceehhhHhhhhcccceeeeecccc
Confidence 36799999999999999998876420 2223333332 1 34678888643
No 276
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.88 E-value=66 Score=19.08 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHhccCCc
Q 015069 58 QVTNALLQEVFSSTGPL 74 (413)
Q Consensus 58 ~~te~~l~~~f~~~G~v 74 (413)
++++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999843
No 277
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=25.59 E-value=23 Score=32.64 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCcc
Q 015069 1 MQQHRLKQQTMMQQQSLYQYHPSL 24 (413)
Q Consensus 1 ~~q~~~~qq~~~~qq~~~~~~~~~ 24 (413)
|||++++||+++|+|++...+...
T Consensus 349 lQQqq~QqQQ~hQqQQm~lqQqQQ 372 (468)
T PF11498_consen 349 LQQQQQQQQQRHQQQQMQLQQQQQ 372 (468)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 278
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.21 E-value=1.7e+02 Score=20.13 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=38.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYST 300 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~ 300 (413)
.++.|.++.=.-....+...++.. ..|.++.+..+++.+.|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v--~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEV--DGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcC--CCeeEEEEEcccCeEEEEEcC
Confidence 457787887777788899999998 779999999999999999988
No 279
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=24.90 E-value=85 Score=29.32 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=4.0
Q ss_pred eEEEEEEcc
Q 015069 202 RQIRCNWAA 210 (413)
Q Consensus 202 ~~i~v~~~~ 210 (413)
+.|+|....
T Consensus 214 kaIKVTVDG 222 (475)
T KOG3982|consen 214 KAIKVTVDG 222 (475)
T ss_pred ceEEEeccC
Confidence 444454443
No 280
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=24.87 E-value=1.8e+02 Score=20.32 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCc
Q 015069 66 EVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH 109 (413)
Q Consensus 66 ~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~ 109 (413)
.-+.+||.|.-+ .+...|+.+ |.|.+++...++.|....
T Consensus 15 r~L~kfG~i~Y~----Skk~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 15 RQLRKFGDIHYV----SKKMKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhHhhcccEEEE----ECCccEEEE-EECHHHHHHHHHHHhcCC
Confidence 356789976533 344567766 788999999998877644
No 281
>PRK11901 hypothetical protein; Reviewed
Probab=24.81 E-value=1.5e+02 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHhccCCcceEEEEecCC---CceE--EEEEcCHHHHHHHHHHhCCCc
Q 015069 58 QVTNALLQEVFSSTGPLEGCKLIKKDK---SSYG--FVDYFDRRSAALAIVTLNGRH 109 (413)
Q Consensus 58 ~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~a--fV~F~~~~~A~~A~~~l~~~~ 109 (413)
..+++.|..|.++++ +..+++.+... .+|. |=.|.+.++|+.|+..|....
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 356888999999886 45566665433 3344 447999999999999877543
No 282
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=24.46 E-value=32 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSS 70 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~ 70 (413)
.+++||||+||..+-.+.=..+++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHHH
Confidence 4689999999998876665444443
No 283
>PHA01632 hypothetical protein
Probab=23.90 E-value=78 Score=20.61 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.1
Q ss_pred EEEcCCCccCCHHHHHHHHhc
Q 015069 50 VYVGNIHPQVTNALLQEVFSS 70 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~ 70 (413)
|.|...|..-||++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987664
No 284
>PRK10927 essential cell division protein FtsN; Provisional
Probab=23.18 E-value=2e+02 Score=26.58 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=39.4
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceE---EEEEcCHHHHHHHHHHhCCCcccCc
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYG---FVDYFDRRSAALAIVTLNGRHIFGQ 113 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~a---fV~F~~~~~A~~A~~~l~~~~i~g~ 113 (413)
-.|-|+-+-....-+.|+.-+..-|--..| . .+.++- +-=|.+.++|.+++..|.+.-|.|.
T Consensus 248 ~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I--~--~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~c 312 (319)
T PRK10927 248 WMVQCGSFRGAEQAETVRAQLAFEGFDSKI--T--TNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 312 (319)
T ss_pred EEEEeCccCCHHHHHHHHHHHHHcCCeeEE--c--cCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCce
Confidence 346677777777777788877776732222 1 122222 2237899999999998887766544
No 285
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.98 E-value=73 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=27.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEe
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 287 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~ 287 (413)
..+||+-|+|..+|++-|..+.+.. |.+..+.+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsql--g~vq~~~y 72 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQL--GHVQELLY 72 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHh--hhhhheec
Confidence 3779999999999999999999999 65555543
No 286
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.88 E-value=45 Score=31.53 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=49.5
Q ss_pred CceEEEcCCCcccChH--------HHHhhhcc--CCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 015069 132 HFNVFVGDLSPEVTDA--------TLFACFSV--FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~--------~l~~~f~~--~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (413)
.+.+|+.+.......+ ++...|.. ++++..++.-+|......+|..|++|.....+++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3568888887665544 89999988 6788888888887677889999999999999998874
No 287
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.63 E-value=43 Score=33.56 Aligned_cols=6 Identities=17% Similarity=0.600 Sum_probs=2.5
Q ss_pred eEEEcC
Q 015069 49 SVYVGN 54 (413)
Q Consensus 49 tv~V~n 54 (413)
.|++..
T Consensus 235 vi~~pq 240 (728)
T KOG4592|consen 235 VIYLPQ 240 (728)
T ss_pred cccccc
Confidence 344433
No 288
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=22.33 E-value=2.3e+02 Score=19.27 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=26.3
Q ss_pred ecCCCCCCHHHHHHHhhc--cCccceEEEEeeccccEE-EEEeCC
Q 015069 259 GNLSSEVTSVDLHRHFHA--LCVGTIEDVRVQRDKGFG-FVRYST 300 (413)
Q Consensus 259 ~nLp~~~t~e~L~~~F~~--~~~G~i~~v~~~~~kg~a-fV~f~~ 300 (413)
.-+-..+..+ |.+.... . |.|...++...+|.+ +|+|.+
T Consensus 10 ~~irDRi~~~-l~~~l~~~~~--g~I~~fKmtDG~giG~vv~~~n 51 (64)
T PF11061_consen 10 SRIRDRIPKE-LVDKLGKNPI--GTIKGFKMTDGSGIGVVVEFSN 51 (64)
T ss_pred hhhhhhccHH-HHHHhccCCc--EEEEEEEEecCCcEEEEEEecC
Confidence 3444444444 4444554 6 999999999999976 577765
No 289
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.13 E-value=3.2e+02 Score=27.69 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEE-EEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccE
Q 015069 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIR-CNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTT 255 (413)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~l~g~~i~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
||+++.++..-+-..+.++...+.+-.|. +-.-......+..-...+..+-.-+..........
T Consensus 239 C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~e--------------- 303 (621)
T COG0445 239 CYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDE--------------- 303 (621)
T ss_pred eeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCce---------------
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeC
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 299 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~ 299 (413)
+|+.+|..+..++-=.++.... ...+.+++.+. ||| |+|+
T Consensus 304 vY~nGlSTSlP~dVQ~~~irsi--pGlEna~i~rp-gYA-IEYD 343 (621)
T COG0445 304 VYPNGLSTSLPEDVQEQIIRSI--PGLENAEILRP-GYA-IEYD 343 (621)
T ss_pred EecCcccccCCHHHHHHHHHhC--cccccceeecc-cee-eeec
No 290
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.97 E-value=73 Score=18.85 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHHhccC
Q 015069 57 PQVTNALLQEVFSSTG 72 (413)
Q Consensus 57 ~~~te~~l~~~f~~~G 72 (413)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998764
No 291
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.69 E-value=2.8e+02 Score=25.72 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHhc-------------cCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 57 PQVTNALLQEVFSS-------------TGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 57 ~~~te~~l~~~f~~-------------~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.-||..||.+|=.. .|+++.|++....+..|-|-+|.+.. +=-|--|..+|..+.
T Consensus 301 s~WtRpdI~~FK~~i~~d~~~gvItvGhGetVTVRVPThenGsclFWEFATD~------------YDIGFGvYFEWt~~~ 368 (469)
T KOG3878|consen 301 SIWTRPDIEQFKTEISADDGDGVITVGHGETVTVRVPTHENGSCLFWEFATDS------------YDIGFGVYFEWTKPV 368 (469)
T ss_pred hhcCcccHHHHHHHhccCCCCCeEEecCCceEEEeccccCCCceEEEEecccc------------ccccceEEEEeecCC
Confidence 34677777766443 46677777777777779999997632 112556777887554
No 292
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.22 E-value=4.7e+02 Score=25.78 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=52.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhc---cCCcceEEEEecCC--CceE-EEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSS---TGPLEGCKLIKKDK--SSYG-FVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~---~G~v~~v~i~~~~~--~g~a-fV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
.+|.|+.||+.+..+++.+.... -+.+..|.=+++.+ .+.- .|++.....+...+..|-. -..|...++.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k----~t~L~~s~~~ 301 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYK----VTKLQTTFGI 301 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHH----hcCCceeeee
Confidence 67999999999999888876543 13232232333322 2444 4556555555544443332 2233333332
Q ss_pred cCCCCCCCCCCceEEE-cCCCcccChHHHHhhhcc
Q 015069 122 ASSQREDTSGHFNVFV-GDLSPEVTDATLFACFSV 155 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v-~nl~~~~~~~~l~~~f~~ 155 (413)
+-.++. .|-|...+-.+|.+.|-.
T Consensus 302 ----------Nm~~~~~~g~p~~~~l~~iL~~f~~ 326 (445)
T cd00187 302 ----------NMVAFDPNGRPKKLNLKEILQEFLD 326 (445)
T ss_pred ----------eEEEEecCCeeEEeCHHHHHHHHHH
Confidence 224666 677777776666665543
No 293
>PRK02302 hypothetical protein; Provisional
Probab=20.64 E-value=2.2e+02 Score=20.84 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCc
Q 015069 66 EVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH 109 (413)
Q Consensus 66 ~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~ 109 (413)
.-+.+||.|..+ .+...|+.+ |.|.+++...++.|....
T Consensus 21 r~LrkfG~I~Y~----Skk~kYvvl-Yvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 21 RKLSKYGDIVYH----SKRSRYLVL-YVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHHhhcCcEEEE----eccccEEEE-EECHHHHHHHHHHHhcCC
Confidence 346789976533 344457766 789999999998877644
No 294
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.41 E-value=4.3e+02 Score=20.80 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCeEEEcCCCcc---CCHHHHHHHHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 47 CRSVYVGNIHPQ---VTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 47 ~~tv~V~nLp~~---~te~~l~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...|.|+..... .+-..+.+.+++-| .++++.. ..+...|.|.+.++-.+|.+-|....-.+-.|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~----~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP----ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe----eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 445777766333 56778888999877 4555443 23379999999999998888776554334444433
No 295
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=20.00 E-value=35 Score=31.37 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCeeCCeeE
Q 015069 313 ARILCGKPI 321 (413)
Q Consensus 313 g~~l~gr~l 321 (413)
++..++-+|
T Consensus 335 sRDyYnF~l 343 (423)
T PF02166_consen 335 SRDYYNFPL 343 (423)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 334444343
Done!