Query 015069
Match_columns 413
No_of_seqs 291 out of 2629
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 4.9E-47 1.7E-51 348.0 30.4 239 46-330 21-265 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-46 1.2E-50 343.8 27.8 246 41-329 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-34 6E-39 252.6 19.4 166 129-329 12-181 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 8.7E-34 3E-38 238.5 20.2 162 48-210 1-165 (166)
5 4f02_A Polyadenylate-binding p 100.0 3.3E-34 1.1E-38 250.9 17.8 166 44-212 12-181 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.6E-33 2.3E-37 233.6 19.9 161 46-209 2-168 (168)
7 1l3k_A Heterogeneous nuclear r 100.0 6.4E-33 2.2E-37 239.8 19.4 171 43-215 9-186 (196)
8 2qfj_A FBP-interacting repress 100.0 8E-33 2.7E-37 243.0 20.0 169 45-213 26-206 (216)
9 2qfj_A FBP-interacting repress 100.0 2.2E-33 7.4E-38 246.6 15.8 174 132-331 28-207 (216)
10 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-32 5.5E-37 231.2 20.3 159 131-326 2-168 (168)
11 1fxl_A Paraneoplastic encephal 100.0 1.3E-32 4.3E-37 231.6 19.2 161 46-209 1-167 (167)
12 3md3_A Nuclear and cytoplasmic 100.0 2.1E-32 7.2E-37 230.0 20.3 160 133-328 1-166 (166)
13 1fxl_A Paraneoplastic encephal 100.0 4.2E-32 1.4E-36 228.4 20.7 158 132-326 2-167 (167)
14 1l3k_A Heterogeneous nuclear r 100.0 3.6E-32 1.2E-36 235.1 20.2 173 127-332 8-186 (196)
15 2g4b_A Splicing factor U2AF 65 100.0 3.7E-32 1.3E-36 229.9 18.5 159 45-209 2-171 (172)
16 2adc_A Polypyrimidine tract-bi 100.0 9.8E-32 3.4E-36 237.9 21.6 196 127-329 29-228 (229)
17 3nmr_A Cugbp ELAV-like family 100.0 5.3E-32 1.8E-36 229.6 18.8 163 45-210 1-175 (175)
18 3nmr_A Cugbp ELAV-like family 100.0 1.1E-31 3.8E-36 227.6 19.8 161 131-327 2-175 (175)
19 2yh0_A Splicing factor U2AF 65 100.0 8.5E-32 2.9E-36 233.2 18.8 166 45-213 2-195 (198)
20 3pgw_A U1-A; protein-RNA compl 100.0 2.5E-31 8.4E-36 243.3 21.7 196 128-328 5-282 (282)
21 1qm9_A Polypyrimidine tract-bi 100.0 1.5E-31 5E-36 231.7 19.0 191 132-329 3-197 (198)
22 3tyt_A Heterogeneous nuclear r 100.0 1E-31 3.6E-36 232.5 17.1 162 45-209 2-204 (205)
23 2cjk_A Nuclear polyadenylated 100.0 1.8E-32 6E-37 230.8 11.4 161 46-212 2-166 (167)
24 2cjk_A Nuclear polyadenylated 100.0 4.5E-32 1.5E-36 228.3 12.8 159 131-329 2-166 (167)
25 3tyt_A Heterogeneous nuclear r 100.0 8.3E-31 2.8E-35 226.8 20.0 190 130-326 2-204 (205)
26 2adc_A Polypyrimidine tract-bi 100.0 8E-31 2.7E-35 232.0 20.1 163 43-211 30-227 (229)
27 3smz_A Protein raver-1, ribonu 100.0 2.3E-30 7.8E-35 237.1 21.1 168 46-214 94-266 (284)
28 1fje_B Nucleolin RBD12, protei 100.0 1.4E-30 4.9E-35 220.8 17.6 164 42-212 8-174 (175)
29 1fje_B Nucleolin RBD12, protei 100.0 3.9E-31 1.3E-35 224.4 13.9 164 128-329 9-174 (175)
30 3pgw_A U1-A; protein-RNA compl 100.0 5E-30 1.7E-34 234.6 21.1 163 43-210 5-281 (282)
31 3sde_A Paraspeckle component 1 100.0 3.9E-30 1.3E-34 232.1 19.9 163 39-213 14-180 (261)
32 2yh0_A Splicing factor U2AF 65 100.0 7.5E-30 2.5E-34 220.9 20.7 177 131-331 3-196 (198)
33 1qm9_A Polypyrimidine tract-bi 100.0 2E-30 6.9E-35 224.5 16.2 160 46-211 2-196 (198)
34 2g4b_A Splicing factor U2AF 65 100.0 7E-30 2.4E-34 215.9 17.9 153 131-327 3-172 (172)
35 2ghp_A U4/U6 snRNA-associated 100.0 4.5E-30 1.5E-34 236.1 17.7 167 45-212 115-291 (292)
36 3sde_A Paraspeckle component 1 100.0 2.3E-28 7.8E-33 220.5 19.9 153 129-330 19-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-22 7.1E-27 167.3 13.9 139 76-214 2-152 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 6.7E-22 2.3E-26 164.2 15.1 145 161-331 2-152 (158)
39 2i2y_A Fusion protein consists 99.9 3.2E-22 1.1E-26 164.5 11.8 137 171-329 10-148 (150)
40 4f25_A Polyadenylate-binding p 99.9 9.4E-22 3.2E-26 153.8 10.2 103 46-148 4-113 (115)
41 4f25_A Polyadenylate-binding p 99.9 1.4E-21 4.9E-26 152.8 10.4 110 131-269 4-113 (115)
42 2i2y_A Fusion protein consists 99.9 2.9E-21 1E-25 158.8 11.5 124 83-212 11-148 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 4.6E-20 1.6E-24 139.7 11.1 81 131-211 18-98 (99)
44 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-19 3.8E-24 137.2 10.6 80 251-332 14-95 (105)
45 3r27_A HnRNP L, heterogeneous 99.8 1.6E-19 5.4E-24 134.9 11.1 81 248-330 16-98 (100)
46 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-19 5.9E-24 136.6 10.3 74 253-328 19-98 (99)
47 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-19 1.1E-23 128.0 10.7 73 253-327 7-79 (89)
48 2lxi_A RNA-binding protein 10; 99.8 7.5E-20 2.6E-24 136.4 6.9 84 132-215 1-86 (91)
49 3s8s_A Histone-lysine N-methyl 99.8 4.8E-19 1.6E-23 136.8 11.6 83 130-212 4-86 (110)
50 1x4d_A Matrin 3; structural ge 99.8 3.9E-19 1.3E-23 134.3 10.7 78 251-330 13-93 (102)
51 3lqv_A PRE-mRNA branch site pr 99.8 2E-19 6.7E-24 140.8 9.2 103 45-158 6-109 (115)
52 2cq1_A PTB-like protein L; RRM 99.8 1.8E-18 6.1E-23 130.9 13.7 82 249-332 11-94 (101)
53 3r27_A HnRNP L, heterogeneous 99.8 6.9E-19 2.4E-23 131.5 10.2 86 37-124 11-98 (100)
54 2ad9_A Polypyrimidine tract-bi 99.8 9.3E-19 3.2E-23 135.7 11.3 82 249-332 27-110 (119)
55 2lea_A Serine/arginine-rich sp 99.8 1.8E-19 6.1E-24 144.8 7.3 125 87-215 6-130 (135)
56 2hvz_A Splicing factor, argini 99.8 5.5E-19 1.9E-23 134.8 9.3 93 48-141 1-100 (101)
57 1wex_A Hypothetical protein (r 99.8 2.3E-18 7.9E-23 131.1 12.4 81 249-331 11-93 (104)
58 1sjq_A Polypyrimidine tract-bi 99.8 7.6E-19 2.6E-23 132.6 9.6 84 43-128 12-97 (105)
59 2dgo_A Cytotoxic granule-assoc 99.8 7.7E-18 2.6E-22 131.7 15.3 82 251-334 13-100 (115)
60 1x4d_A Matrin 3; structural ge 99.8 9.8E-19 3.4E-23 132.1 9.6 88 36-125 4-94 (102)
61 2lkz_A RNA-binding protein 5; 99.8 4.6E-19 1.6E-23 132.6 7.7 81 131-211 8-94 (95)
62 2cq1_A PTB-like protein L; RRM 99.8 2.8E-18 9.4E-23 129.8 12.0 85 41-127 9-95 (101)
63 2do0_A HnRNP M, heterogeneous 99.8 8.9E-18 3.1E-22 131.1 15.0 82 250-333 12-98 (114)
64 1x4f_A Matrin 3; structural ge 99.8 1.7E-18 5.7E-23 132.7 10.4 80 250-331 22-104 (112)
65 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.1E-18 1.4E-22 130.4 12.5 89 40-128 8-98 (103)
66 2cpj_A Non-POU domain-containi 99.8 3.9E-18 1.3E-22 129.5 12.0 81 249-331 11-91 (99)
67 1why_A Hypothetical protein ri 99.8 4.8E-18 1.7E-22 128.5 12.5 80 250-331 14-95 (97)
68 2dgo_A Cytotoxic granule-assoc 99.8 8.2E-18 2.8E-22 131.5 14.0 91 125-215 8-98 (115)
69 3md1_A Nuclear and cytoplasmic 99.8 4.1E-18 1.4E-22 125.0 11.5 80 133-212 2-81 (83)
70 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.5E-18 8.6E-23 127.3 10.4 83 130-212 4-86 (87)
71 1wex_A Hypothetical protein (r 99.8 4.7E-18 1.6E-22 129.4 12.0 83 43-127 11-95 (104)
72 2cq3_A RNA-binding protein 9; 99.8 7.9E-18 2.7E-22 128.8 13.2 89 39-127 7-97 (103)
73 2lkz_A RNA-binding protein 5; 99.8 1.2E-18 4E-23 130.4 8.3 76 251-328 7-94 (95)
74 2cq0_A Eukaryotic translation 99.8 6.9E-18 2.4E-22 129.2 12.8 89 126-214 9-97 (103)
75 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-18 1.3E-22 125.7 11.0 76 250-327 9-85 (85)
76 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-17 4E-22 127.9 14.0 82 249-332 11-96 (103)
77 2d9p_A Polyadenylate-binding p 99.8 4.6E-18 1.6E-22 130.2 11.7 91 39-129 7-99 (103)
78 1x4g_A Nucleolysin TIAR; struc 99.8 6.7E-18 2.3E-22 130.6 12.5 80 251-332 23-102 (109)
79 1x5u_A Splicing factor 3B subu 99.8 6E-18 2E-22 130.0 12.1 89 39-127 7-99 (105)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.8E-18 9.5E-23 143.2 11.0 125 90-214 11-154 (165)
81 2dgx_A KIAA0430 protein; RRM d 99.8 7E-18 2.4E-22 127.2 12.1 78 252-331 8-92 (96)
82 3s8s_A Histone-lysine N-methyl 99.8 4.2E-18 1.4E-22 131.4 11.1 77 251-329 4-86 (110)
83 2lxi_A RNA-binding protein 10; 99.8 1E-18 3.4E-23 130.3 7.3 76 254-331 2-85 (91)
84 2ad9_A Polypyrimidine tract-bi 99.8 5.9E-18 2E-22 131.1 11.7 86 42-129 26-113 (119)
85 2lea_A Serine/arginine-rich sp 99.8 1.2E-18 3.9E-23 140.0 8.0 119 176-332 6-130 (135)
86 2cq3_A RNA-binding protein 9; 99.8 1.8E-17 6E-22 126.9 14.3 82 248-331 10-95 (103)
87 1whw_A Hypothetical protein ri 99.8 7.1E-18 2.4E-22 128.1 12.0 86 129-214 5-90 (99)
88 2cqc_A Arginine/serine-rich sp 99.8 6.9E-18 2.4E-22 127.2 11.5 86 126-211 9-94 (95)
89 2dnq_A RNA-binding protein 4B; 99.8 1.2E-17 4E-22 124.5 12.6 78 251-332 6-83 (90)
90 1x4a_A Splicing factor, argini 99.8 2.3E-17 8E-22 127.6 14.7 81 249-331 18-101 (109)
91 2do4_A Squamous cell carcinoma 99.8 1.2E-17 4.1E-22 127.1 12.7 86 127-213 12-97 (100)
92 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-17 4.5E-22 128.1 13.0 86 42-127 10-101 (105)
93 2dnz_A Probable RNA-binding pr 99.8 7.8E-18 2.7E-22 126.9 11.4 85 130-214 3-87 (95)
94 2dnz_A Probable RNA-binding pr 99.8 1.2E-17 4.2E-22 125.8 12.5 79 252-332 4-88 (95)
95 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.9E-22 129.4 12.4 88 40-127 15-103 (109)
96 2cpz_A CUG triplet repeat RNA- 99.7 1.5E-17 5.1E-22 130.0 13.3 82 248-331 20-107 (115)
97 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-17 3.9E-22 127.7 12.3 87 42-128 7-97 (102)
98 1whw_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 126.3 12.9 80 251-332 6-91 (99)
99 2x1f_A MRNA 3'-END-processing 99.7 6.1E-18 2.1E-22 127.7 10.6 82 132-213 2-83 (96)
100 2cpz_A CUG triplet repeat RNA- 99.7 8E-18 2.8E-22 131.5 11.5 89 126-214 19-107 (115)
101 2dgs_A DAZ-associated protein 99.7 1.2E-17 4.2E-22 126.8 12.2 86 128-214 6-91 (99)
102 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.8E-18 2E-22 124.7 10.1 81 129-209 4-84 (85)
103 2dgu_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 125.6 14.3 79 251-333 9-87 (103)
104 1x5t_A Splicing factor 3B subu 99.7 6.7E-18 2.3E-22 127.5 10.6 86 130-215 3-89 (96)
105 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.1E-22 125.8 12.5 84 40-124 12-95 (97)
106 2cph_A RNA binding motif prote 99.7 1.3E-17 4.4E-22 128.6 12.3 88 40-127 8-101 (107)
107 2jrs_A RNA-binding protein 39; 99.7 7.6E-18 2.6E-22 129.8 10.9 87 126-212 20-106 (108)
108 2cq0_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 127.5 12.3 81 250-332 12-98 (103)
109 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.7E-18 3.3E-22 128.1 11.3 88 128-215 8-95 (102)
110 2cpj_A Non-POU domain-containi 99.7 1.3E-17 4.3E-22 126.7 11.9 85 39-125 7-91 (99)
111 2cpf_A RNA binding motif prote 99.7 1.2E-17 4.2E-22 126.5 11.8 79 252-332 4-91 (98)
112 2dnq_A RNA-binding protein 4B; 99.7 1.4E-17 4.8E-22 124.0 11.9 81 43-127 4-84 (90)
113 1x5u_A Splicing factor 3B subu 99.7 1E-17 3.6E-22 128.7 11.5 89 126-214 9-97 (105)
114 2kxn_B Transformer-2 protein h 99.7 6.4E-18 2.2E-22 134.5 10.5 86 39-124 38-127 (129)
115 1p27_B RNA-binding protein 8A; 99.7 7.5E-18 2.6E-22 129.7 10.6 85 128-212 19-103 (106)
116 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.6E-22 127.1 12.2 80 251-332 13-96 (103)
117 2dgs_A DAZ-associated protein 99.7 2.4E-17 8.2E-22 125.2 13.0 78 251-331 8-91 (99)
118 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4.1E-22 123.0 10.9 75 251-327 5-85 (85)
119 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-17 4.3E-22 127.5 11.4 80 251-332 10-95 (102)
120 1u6f_A Tcubp1, RNA-binding pro 99.7 9.5E-18 3.3E-22 135.9 11.3 85 42-126 37-125 (139)
121 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-17 5.2E-22 125.0 11.7 77 249-327 12-94 (94)
122 2la6_A RNA-binding protein FUS 99.7 1.3E-17 4.4E-22 126.6 11.4 84 126-209 7-98 (99)
123 1x4c_A Splicing factor, argini 99.7 4.2E-17 1.4E-21 125.8 14.4 78 251-331 13-95 (108)
124 2err_A Ataxin-2-binding protei 99.7 7.6E-18 2.6E-22 130.1 10.1 83 41-123 23-107 (109)
125 1x4h_A RNA-binding protein 28; 99.7 1.5E-17 5E-22 129.2 11.8 90 38-127 6-105 (111)
126 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-17 5E-22 125.1 11.4 83 127-209 11-93 (94)
127 2cpf_A RNA binding motif prote 99.7 1E-17 3.6E-22 126.9 10.7 85 45-129 3-94 (98)
128 2cqd_A RNA-binding region cont 99.7 4.8E-17 1.6E-21 127.3 14.8 82 248-332 12-99 (116)
129 3p5t_L Cleavage and polyadenyl 99.7 1.5E-18 5.1E-23 129.3 5.8 81 133-213 2-84 (90)
130 2la4_A Nuclear and cytoplasmic 99.7 6.1E-18 2.1E-22 129.0 9.3 75 252-328 26-100 (101)
131 2do4_A Squamous cell carcinoma 99.7 2.2E-17 7.7E-22 125.6 12.4 80 250-331 14-98 (100)
132 3md1_A Nuclear and cytoplasmic 99.7 1.3E-17 4.4E-22 122.2 10.7 75 254-330 2-82 (83)
133 2cph_A RNA binding motif prote 99.7 2.6E-17 8.8E-22 126.9 12.9 80 250-331 12-99 (107)
134 2dnm_A SRP46 splicing factor; 99.7 8.4E-18 2.9E-22 128.7 10.0 88 127-214 8-95 (103)
135 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6E-22 128.8 12.0 89 127-215 10-104 (111)
136 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.7E-22 123.9 10.2 76 252-329 5-86 (87)
137 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-17 5.5E-22 126.9 11.4 81 250-332 9-95 (102)
138 2jvr_A Nucleolar protein 3; RN 99.7 7.6E-18 2.6E-22 129.5 9.5 77 252-330 27-106 (111)
139 2la4_A Nuclear and cytoplasmic 99.7 2.8E-18 9.7E-23 130.8 7.1 77 44-122 24-100 (101)
140 3ns6_A Eukaryotic translation 99.7 4E-18 1.4E-22 129.5 7.9 82 130-211 4-92 (100)
141 2dgt_A RNA-binding protein 30; 99.7 3.6E-17 1.2E-21 122.4 12.9 78 250-331 7-84 (92)
142 2dnm_A SRP46 splicing factor; 99.7 1.8E-17 6.1E-22 126.8 11.5 80 250-331 10-95 (103)
143 2khc_A Testis-specific RNP-typ 99.7 8.4E-18 2.9E-22 132.1 9.9 84 126-209 34-117 (118)
144 2wbr_A GW182, gawky, LD47780P; 99.7 8.4E-18 2.9E-22 120.8 8.9 73 46-120 6-78 (89)
145 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.9E-22 124.0 9.9 79 46-124 3-86 (88)
146 2dnh_A Bruno-like 5, RNA bindi 99.7 3E-17 1E-21 126.1 12.5 80 251-332 13-100 (105)
147 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-17 4.8E-22 124.7 10.3 80 251-332 6-89 (92)
148 2cqc_A Arginine/serine-rich sp 99.7 2.3E-17 7.9E-22 124.3 11.6 79 248-328 10-94 (95)
149 2x1f_A MRNA 3'-END-processing 99.7 1.9E-17 6.7E-22 124.9 11.0 76 253-330 2-83 (96)
150 2dnp_A RNA-binding protein 14; 99.7 3.8E-17 1.3E-21 121.7 12.2 77 251-331 7-83 (90)
151 1p27_B RNA-binding protein 8A; 99.7 1.7E-17 5.8E-22 127.7 10.7 83 42-124 18-104 (106)
152 2cpd_A Apobec-1 stimulating pr 99.7 7.4E-17 2.5E-21 122.4 14.0 81 249-331 11-91 (99)
153 2cq2_A Hypothetical protein LO 99.7 2E-17 6.8E-22 126.7 10.7 78 251-330 23-107 (114)
154 1x5t_A Splicing factor 3B subu 99.7 1.9E-17 6.6E-22 125.0 10.6 79 252-332 4-89 (96)
155 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-17 5.9E-22 125.1 10.3 82 44-125 6-92 (96)
156 2khc_A Testis-specific RNP-typ 99.7 1.6E-17 5.5E-22 130.5 10.6 80 42-121 35-118 (118)
157 2fy1_A RNA-binding motif prote 99.7 2.3E-17 8E-22 128.8 11.4 85 129-214 4-88 (116)
158 1why_A Hypothetical protein ri 99.7 3E-17 1E-21 124.1 11.7 80 43-124 13-94 (97)
159 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 127.8 12.4 80 252-333 6-90 (116)
160 1whx_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 129.0 10.0 76 253-330 10-85 (111)
161 3lqv_A PRE-mRNA branch site pr 99.7 5.4E-18 1.9E-22 132.5 7.6 103 129-277 5-107 (115)
162 2dng_A Eukaryotic translation 99.7 4.5E-17 1.6E-21 124.5 12.6 87 126-214 9-95 (103)
163 1x4c_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 126.2 12.0 79 45-126 13-96 (108)
164 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7.1E-22 124.5 10.4 78 249-328 12-94 (95)
165 1x4f_A Matrin 3; structural ge 99.7 2.5E-17 8.7E-22 126.1 11.0 81 43-125 21-104 (112)
166 1wi8_A EIF-4B, eukaryotic tran 99.7 2.7E-17 9.3E-22 126.0 11.1 87 39-127 7-98 (104)
167 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-17 9.6E-22 123.0 10.9 82 44-125 5-88 (92)
168 3s7r_A Heterogeneous nuclear r 99.7 2.8E-17 9.4E-22 121.6 10.8 82 127-209 6-87 (87)
169 1oo0_B CG8781-PA, drosophila Y 99.7 2.1E-17 7.1E-22 128.1 10.5 86 128-213 22-107 (110)
170 2div_A TRNA selenocysteine ass 99.7 1.9E-17 6.3E-22 125.8 10.0 85 129-213 6-95 (99)
171 2dgp_A Bruno-like 4, RNA bindi 99.7 1.6E-17 5.6E-22 127.8 9.8 89 126-214 7-98 (106)
172 2jvr_A Nucleolar protein 3; RN 99.7 9.2E-18 3.2E-22 129.1 8.3 78 46-123 27-105 (111)
173 2kxn_B Transformer-2 protein h 99.7 1.3E-17 4.6E-22 132.6 9.5 88 126-213 40-127 (129)
174 2la6_A RNA-binding protein FUS 99.7 4E-17 1.4E-21 123.9 11.7 79 43-121 9-99 (99)
175 2dhg_A TRNA selenocysteine ass 99.7 2.6E-17 8.9E-22 126.2 10.8 81 251-333 7-94 (104)
176 2cpe_A RNA-binding protein EWS 99.7 3.4E-17 1.2E-21 127.6 11.6 88 127-214 10-105 (113)
177 2cpe_A RNA-binding protein EWS 99.7 3.7E-17 1.3E-21 127.4 11.7 87 41-127 9-107 (113)
178 4a8x_A RNA-binding protein wit 99.7 3.7E-17 1.3E-21 121.2 11.1 76 253-330 4-86 (88)
179 2jwn_A Embryonic polyadenylate 99.7 2.2E-18 7.5E-23 136.7 4.6 81 131-212 35-115 (124)
180 2cqp_A RNA-binding protein 12; 99.7 2.2E-17 7.6E-22 125.1 10.0 85 128-212 11-95 (98)
181 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-17 7.9E-22 127.0 10.1 79 43-125 27-105 (108)
182 2cqd_A RNA-binding region cont 99.7 4.1E-17 1.4E-21 127.7 11.7 89 126-215 11-99 (116)
183 2cqh_A IGF-II mRNA-binding pro 99.7 1.8E-17 6.1E-22 124.3 9.2 78 251-331 6-85 (93)
184 1wi8_A EIF-4B, eukaryotic tran 99.7 4.5E-17 1.5E-21 124.8 11.6 88 126-215 9-97 (104)
185 2jrs_A RNA-binding protein 39; 99.7 4.2E-17 1.4E-21 125.6 11.5 81 248-330 21-107 (108)
186 3p5t_L Cleavage and polyadenyl 99.7 3.8E-18 1.3E-22 127.0 5.4 76 254-331 2-85 (90)
187 1u6f_A Tcubp1, RNA-binding pro 99.7 3.5E-17 1.2E-21 132.5 11.5 89 127-215 37-125 (139)
188 2err_A Ataxin-2-binding protei 99.7 2.3E-17 7.9E-22 127.4 10.0 80 248-329 24-107 (109)
189 2dgp_A Bruno-like 4, RNA bindi 99.7 5.8E-17 2E-21 124.7 12.0 81 249-331 9-98 (106)
190 1x5p_A Negative elongation fac 99.7 1.4E-16 4.8E-21 120.3 13.9 78 250-331 12-89 (97)
191 2do0_A HnRNP M, heterogeneous 99.7 1.3E-16 4.4E-21 124.5 14.1 86 128-214 11-96 (114)
192 2ytc_A PRE-mRNA-splicing facto 99.7 3.4E-17 1.2E-21 120.6 10.1 77 43-121 8-85 (85)
193 2ywk_A Putative RNA-binding pr 99.7 2.9E-17 9.9E-22 123.7 9.9 84 127-211 11-94 (95)
194 2dgt_A RNA-binding protein 30; 99.7 5.1E-17 1.8E-21 121.5 11.1 81 43-127 6-86 (92)
195 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.8E-17 9.7E-22 137.0 10.8 136 179-331 11-154 (165)
196 1oo0_B CG8781-PA, drosophila Y 99.7 4.4E-17 1.5E-21 126.2 11.1 80 250-331 23-108 (110)
197 2xnq_A Nuclear polyadenylated 99.7 6.9E-17 2.3E-21 121.9 11.8 77 249-329 18-95 (97)
198 2jvo_A Nucleolar protein 3; nu 99.7 3.7E-17 1.3E-21 125.9 10.4 80 248-331 26-105 (108)
199 2hvz_A Splicing factor, argini 99.7 3.4E-17 1.2E-21 124.8 10.2 77 254-332 1-78 (101)
200 2dng_A Eukaryotic translation 99.7 1E-16 3.4E-21 122.6 12.8 78 250-331 12-95 (103)
201 1x4g_A Nucleolysin TIAR; struc 99.7 4.2E-17 1.4E-21 126.1 10.8 83 43-127 21-103 (109)
202 2xnq_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 122.8 10.7 78 42-123 17-95 (97)
203 3ulh_A THO complex subunit 4; 99.7 5.3E-17 1.8E-21 125.1 11.2 83 127-210 24-106 (107)
204 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 123.9 10.0 82 42-123 10-95 (98)
205 3n9u_C Cleavage and polyadenyl 99.7 2.4E-17 8.3E-22 135.4 9.7 82 131-212 54-137 (156)
206 2dhg_A TRNA selenocysteine ass 99.7 3E-17 1E-21 125.8 9.7 86 128-214 5-92 (104)
207 2a3j_A U1 small nuclear ribonu 99.7 3.9E-17 1.3E-21 128.9 10.5 81 44-124 26-111 (127)
208 1s79_A Lupus LA protein; RRM, 99.7 1.8E-17 6.3E-22 126.1 8.3 82 128-211 7-88 (103)
209 2e44_A Insulin-like growth fac 99.7 5.2E-17 1.8E-21 122.5 10.8 82 43-124 11-93 (96)
210 2rs2_A Musashi-1, RNA-binding 99.7 4.4E-17 1.5E-21 125.8 10.4 87 127-214 20-106 (109)
211 2m2b_A RNA-binding protein 10; 99.7 4.2E-17 1.4E-21 130.5 10.6 81 248-331 18-110 (131)
212 2a3j_A U1 small nuclear ribonu 99.7 4.9E-17 1.7E-21 128.3 10.8 79 250-330 26-111 (127)
213 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-16 4.2E-21 122.1 12.8 88 126-215 9-96 (103)
214 3ucg_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 120.8 10.2 80 132-212 6-85 (89)
215 2dnp_A RNA-binding protein 14; 99.7 5.6E-17 1.9E-21 120.7 10.4 80 43-126 5-84 (90)
216 2cpi_A CCR4-NOT transcription 99.7 7.3E-17 2.5E-21 125.1 11.4 77 252-330 14-102 (111)
217 2dh8_A DAZ-associated protein 99.7 3.5E-17 1.2E-21 125.7 9.4 87 127-214 11-97 (105)
218 1sjr_A Polypyrimidine tract-bi 99.7 6.7E-17 2.3E-21 131.6 11.5 81 45-125 44-126 (164)
219 1x4e_A RNA binding motif, sing 99.7 9.1E-18 3.1E-22 123.7 5.7 80 130-209 3-82 (85)
220 2dgw_A Probable RNA-binding pr 99.7 1.1E-16 3.6E-21 119.5 11.6 83 128-213 6-88 (91)
221 2ek1_A RNA-binding protein 12; 99.7 2.5E-17 8.7E-22 124.0 8.3 81 130-210 13-93 (95)
222 2m2b_A RNA-binding protein 10; 99.7 4.6E-17 1.6E-21 130.2 10.2 84 43-127 19-112 (131)
223 1p1t_A Cleavage stimulation fa 99.7 1.5E-17 5.2E-22 127.5 7.1 84 131-214 7-90 (104)
224 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-16 4.9E-21 120.8 12.4 82 41-126 9-92 (99)
225 3pgw_S U1-70K; protein-RNA com 99.7 9.1E-18 3.1E-22 160.9 7.1 86 129-214 99-184 (437)
226 2div_A TRNA selenocysteine ass 99.7 5.4E-17 1.8E-21 123.2 10.0 79 251-331 7-96 (99)
227 1wf1_A RNA-binding protein RAL 99.7 1.5E-16 5.1E-21 123.2 12.6 76 252-331 26-102 (110)
228 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.1E-17 7E-22 125.7 7.5 84 127-212 14-98 (100)
229 2kvi_A Nuclear polyadenylated 99.7 6.5E-17 2.2E-21 121.9 10.3 80 43-126 6-86 (96)
230 2e5j_A Methenyltetrahydrofolat 99.7 7.2E-17 2.4E-21 122.0 10.4 78 250-330 16-95 (97)
231 3n9u_C Cleavage and polyadenyl 99.7 2.8E-17 9.6E-22 135.0 8.8 79 45-123 53-137 (156)
232 2kt5_A RNA and export factor-b 99.7 1.7E-16 6E-21 125.6 13.1 86 41-126 29-117 (124)
233 2dgu_A Heterogeneous nuclear r 99.7 9.1E-17 3.1E-21 122.8 11.1 79 44-126 8-86 (103)
234 2fc9_A NCL protein; structure 99.7 4.3E-17 1.5E-21 124.2 9.1 84 41-127 9-95 (101)
235 1nu4_A U1A RNA binding domain; 99.7 8.2E-17 2.8E-21 121.7 10.5 78 251-330 6-90 (97)
236 2mss_A Protein (musashi1); RNA 99.7 1.6E-17 5.5E-22 119.2 6.2 75 134-209 1-75 (75)
237 2dis_A Unnamed protein product 99.7 1.5E-16 5.1E-21 123.0 12.0 79 252-332 7-95 (109)
238 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5.3E-22 126.3 6.3 81 42-124 14-99 (100)
239 2kt5_A RNA and export factor-b 99.7 1.4E-16 4.8E-21 126.2 12.1 85 128-213 31-115 (124)
240 3s7r_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 120.0 9.2 79 41-120 5-87 (87)
241 2cpx_A Hypothetical protein FL 99.7 1.6E-16 5.3E-21 124.2 12.2 86 43-128 21-110 (115)
242 3ulh_A THO complex subunit 4; 99.7 9.8E-17 3.3E-21 123.6 10.9 77 249-327 25-106 (107)
243 3ucg_A Polyadenylate-binding p 99.7 8.2E-17 2.8E-21 119.6 10.0 75 253-330 6-86 (89)
244 2dis_A Unnamed protein product 99.7 7.1E-17 2.4E-21 124.9 9.9 87 129-215 5-95 (109)
245 3ex7_B RNA-binding protein 8A; 99.7 7.9E-17 2.7E-21 128.1 10.3 82 249-332 18-105 (126)
246 2fc9_A NCL protein; structure 99.7 2.4E-16 8.3E-21 120.0 12.5 78 249-331 11-93 (101)
247 3ex7_B RNA-binding protein 8A; 99.7 8E-17 2.7E-21 128.0 10.1 89 127-215 17-105 (126)
248 2kvi_A Nuclear polyadenylated 99.7 5.3E-17 1.8E-21 122.4 8.5 78 251-332 8-86 (96)
249 1wf1_A RNA-binding protein RAL 99.7 2.6E-16 9E-21 121.8 12.7 79 44-126 24-103 (110)
250 2cqh_A IGF-II mRNA-binding pro 99.7 7.5E-17 2.6E-21 120.9 9.3 80 44-126 5-86 (93)
251 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-16 7.1E-21 128.7 12.6 76 253-330 46-125 (164)
252 3ns6_A Eukaryotic translation 99.7 4E-17 1.4E-21 123.9 7.8 80 44-123 3-93 (100)
253 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.9E-17 1E-21 118.5 6.7 76 133-209 1-76 (77)
254 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.6E-16 5.6E-21 131.2 12.0 87 128-214 35-121 (156)
255 2rs2_A Musashi-1, RNA-binding 99.7 6.4E-17 2.2E-21 124.9 8.8 87 38-125 16-106 (109)
256 2cpi_A CCR4-NOT transcription 99.7 1.7E-16 5.8E-21 123.0 11.2 85 129-213 12-102 (111)
257 2dh8_A DAZ-associated protein 99.7 1E-16 3.5E-21 123.0 9.8 80 249-331 12-97 (105)
258 2ek1_A RNA-binding protein 12; 99.7 5.1E-17 1.8E-21 122.3 7.7 77 45-121 13-93 (95)
259 1x5p_A Negative elongation fac 99.7 3.1E-16 1.1E-20 118.4 12.1 85 38-126 6-90 (97)
260 1p1t_A Cleavage stimulation fa 99.7 4.5E-17 1.5E-21 124.9 7.2 77 252-330 7-89 (104)
261 1s79_A Lupus LA protein; RRM, 99.7 9.5E-17 3.2E-21 122.2 8.9 73 252-327 10-87 (103)
262 2e5i_A Heterogeneous nuclear r 99.7 5.6E-16 1.9E-20 121.1 13.3 75 254-330 26-103 (124)
263 1whx_A Hypothetical protein ri 99.7 9.1E-17 3.1E-21 124.4 8.8 79 44-124 7-85 (111)
264 1wg5_A Heterogeneous nuclear r 99.7 2.2E-16 7.6E-21 120.8 10.9 83 41-124 9-95 (104)
265 2diu_A KIAA0430 protein; struc 99.7 3E-16 1E-20 113.7 10.8 75 252-331 7-86 (96)
266 2ki2_A SS-DNA binding protein 99.7 1.7E-17 5.8E-22 123.6 4.4 80 133-213 2-81 (90)
267 2cpy_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 124.9 9.0 83 128-212 11-94 (114)
268 1wg5_A Heterogeneous nuclear r 99.7 1.8E-16 6E-21 121.3 10.1 83 128-212 11-94 (104)
269 3zzy_A Polypyrimidine tract-bi 99.7 2.5E-16 8.4E-21 123.5 11.0 77 252-330 27-107 (130)
270 1x4b_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 124.2 10.1 83 131-214 26-108 (116)
271 1x5o_A RNA binding motif, sing 99.7 2.8E-16 9.7E-21 122.5 11.3 84 128-212 21-112 (114)
272 1wez_A HnRNP H', FTP-3, hetero 99.7 1.3E-16 4.5E-21 121.4 9.0 82 129-213 12-93 (102)
273 2cpx_A Hypothetical protein FL 99.7 6.1E-16 2.1E-20 120.8 13.1 81 250-332 22-108 (115)
274 2cqg_A TDP-43, TAR DNA-binding 99.7 7.2E-16 2.5E-20 117.8 13.1 79 250-332 12-96 (103)
275 2diu_A KIAA0430 protein; struc 99.7 4.4E-16 1.5E-20 112.8 11.0 77 45-127 6-88 (96)
276 2db1_A Heterogeneous nuclear r 99.7 1.8E-16 6.1E-21 124.2 9.7 81 129-211 14-97 (118)
277 2hgl_A HNRPF protein, heteroge 99.7 1.2E-16 4.2E-21 127.5 8.9 82 128-211 40-124 (136)
278 2cpy_A RNA-binding protein 12; 99.7 1.2E-16 4.1E-21 124.5 8.6 81 42-123 10-94 (114)
279 1x4b_A Heterogeneous nuclear r 99.7 2.3E-16 7.9E-21 123.4 10.2 78 251-331 25-108 (116)
280 1x4e_A RNA binding motif, sing 99.7 3.8E-17 1.3E-21 120.3 5.4 75 252-328 4-84 (85)
281 2cq4_A RNA binding motif prote 99.7 1.2E-16 4E-21 124.7 8.5 80 132-212 25-104 (114)
282 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.5E-21 128.4 10.0 83 127-209 58-140 (140)
283 2cq4_A RNA binding motif prote 99.7 4.8E-17 1.6E-21 126.9 6.0 76 252-330 24-105 (114)
284 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.5E-16 1.5E-20 128.6 12.1 79 251-331 37-121 (156)
285 2nlw_A Eukaryotic translation 99.7 1.7E-16 5.8E-21 121.7 8.7 83 128-212 11-100 (105)
286 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-16 1.1E-20 119.2 10.1 81 42-124 10-93 (102)
287 2dgw_A Probable RNA-binding pr 99.7 4E-16 1.4E-20 116.3 10.5 79 44-124 7-88 (91)
288 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.6E-21 120.5 7.9 81 44-124 5-90 (97)
289 2e44_A Insulin-like growth fac 99.7 5.9E-16 2E-20 116.7 11.4 78 251-330 13-93 (96)
290 2fc8_A NCL protein; structure 99.7 6.9E-16 2.4E-20 117.7 11.9 81 250-332 12-95 (102)
291 2fc8_A NCL protein; structure 99.7 7E-16 2.4E-20 117.7 11.8 86 126-214 9-94 (102)
292 2nlw_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 120.1 9.9 76 252-329 14-100 (105)
293 2e5g_A U6 snRNA-specific termi 99.7 6.8E-16 2.3E-20 115.8 11.4 77 252-331 7-84 (94)
294 1wg1_A KIAA1579 protein, homol 99.7 2.8E-16 9.4E-21 116.4 9.1 77 45-124 3-79 (88)
295 1wg1_A KIAA1579 protein, homol 99.7 5.1E-16 1.7E-20 114.9 10.4 75 253-330 5-79 (88)
296 1wel_A RNA-binding protein 12; 99.7 1.1E-16 3.6E-21 126.8 7.1 84 128-212 21-104 (124)
297 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7E-16 2.4E-20 125.0 12.1 77 248-326 58-140 (140)
298 1x5o_A RNA binding motif, sing 99.7 8.4E-16 2.9E-20 119.8 12.1 77 251-329 23-112 (114)
299 2jwn_A Embryonic polyadenylate 99.7 4.5E-16 1.5E-20 123.3 10.5 76 253-331 36-117 (124)
300 2db1_A Heterogeneous nuclear r 99.7 2E-16 7E-21 123.8 8.4 78 44-122 14-97 (118)
301 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.5E-21 114.4 6.6 69 255-326 1-75 (75)
302 3beg_B Splicing factor, argini 99.7 4.5E-16 1.5E-20 121.3 10.0 76 252-330 15-95 (115)
303 2ki2_A SS-DNA binding protein 99.7 5.6E-17 1.9E-21 120.8 4.6 75 254-331 2-82 (90)
304 3zzy_A Polypyrimidine tract-bi 99.7 6.5E-16 2.2E-20 121.1 10.8 80 45-125 26-108 (130)
305 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-16 4.8E-21 122.6 6.8 83 127-211 6-91 (107)
306 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-16 5.8E-21 114.4 6.8 72 48-120 1-76 (77)
307 3pgw_S U1-70K; protein-RNA com 99.7 9E-17 3.1E-21 154.0 6.9 78 251-330 100-183 (437)
308 2cq2_A Hypothetical protein LO 99.6 4.2E-16 1.4E-20 119.4 9.1 77 44-122 22-105 (114)
309 2dnn_A RNA-binding protein 12; 99.6 3.9E-16 1.3E-20 119.7 8.9 77 131-210 15-91 (109)
310 2e5i_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 118.3 12.7 75 48-124 26-103 (124)
311 1fjc_A Nucleolin RBD2, protein 99.6 8.7E-16 3E-20 115.8 10.7 80 250-331 13-93 (96)
312 1fj7_A Nucleolin RBD1, protein 99.6 2.9E-16 1E-20 119.6 8.2 76 252-331 16-97 (101)
313 2j8a_A Histone-lysine N-methyl 99.6 2.7E-16 9.1E-21 120.6 7.8 80 133-212 3-96 (136)
314 1fjc_A Nucleolin RBD2, protein 99.6 1.9E-16 6.6E-21 119.4 7.0 82 43-125 12-93 (96)
315 1iqt_A AUF1, heterogeneous nuc 99.6 6.9E-17 2.4E-21 115.8 4.2 75 134-209 1-75 (75)
316 2e5g_A U6 snRNA-specific termi 99.6 7E-16 2.4E-20 115.7 9.7 79 44-125 5-84 (94)
317 1fj7_A Nucleolin RBD1, protein 99.6 5.7E-17 1.9E-21 123.5 3.8 84 129-214 14-97 (101)
318 2hzc_A Splicing factor U2AF 65 99.6 7E-16 2.4E-20 114.0 9.5 71 252-325 5-86 (87)
319 2hgl_A HNRPF protein, heteroge 99.6 3.4E-16 1.2E-20 124.9 8.3 79 43-122 40-124 (136)
320 2krb_A Eukaryotic translation 99.6 1.6E-16 5.4E-21 115.7 5.7 72 133-206 2-80 (81)
321 2krb_A Eukaryotic translation 99.6 2.6E-16 8.8E-21 114.6 6.3 69 254-324 2-81 (81)
322 3q2s_C Cleavage and polyadenyl 99.6 3.4E-16 1.2E-20 137.2 8.0 81 131-211 67-149 (229)
323 3beg_B Splicing factor, argini 99.6 6.3E-16 2.2E-20 120.5 8.7 77 45-124 14-95 (115)
324 2lmi_A GRSF-1, G-rich sequence 99.6 3.5E-16 1.2E-20 120.3 7.1 80 43-123 7-92 (107)
325 2bz2_A Negative elongation fac 99.6 9.2E-16 3.2E-20 120.4 9.6 77 251-331 37-113 (121)
326 1wel_A RNA-binding protein 12; 99.6 5E-16 1.7E-20 122.9 7.9 80 43-123 21-104 (124)
327 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.4E-21 127.3 4.8 123 86-213 2-124 (139)
328 3d2w_A TAR DNA-binding protein 99.6 1.6E-15 5.6E-20 112.2 9.9 74 251-330 9-85 (89)
329 2dnn_A RNA-binding protein 12; 99.6 5.3E-16 1.8E-20 119.0 7.5 76 45-122 14-92 (109)
330 2dha_A FLJ20171 protein; RRM d 99.6 4.8E-16 1.7E-20 121.8 7.2 80 130-211 21-104 (123)
331 2bz2_A Negative elongation fac 99.6 2.4E-15 8.3E-20 118.0 10.8 79 43-125 35-113 (121)
332 2lcw_A RNA-binding protein FUS 99.4 3.3E-17 1.1E-21 128.2 0.0 86 129-214 4-97 (116)
333 2xs2_A Deleted in azoospermia- 99.6 3.9E-16 1.3E-20 119.1 5.7 81 130-213 7-87 (102)
334 1iqt_A AUF1, heterogeneous nuc 99.6 5.3E-16 1.8E-20 111.2 5.8 71 49-120 1-75 (75)
335 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5E-20 112.5 8.2 76 44-124 8-85 (89)
336 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.9E-20 112.8 7.6 73 44-119 3-86 (87)
337 3u1l_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.5E-20 132.0 9.1 79 250-330 131-230 (240)
338 2f3j_A RNA and export factor b 99.6 3.2E-15 1.1E-19 125.5 10.7 82 43-124 84-168 (177)
339 1wf0_A TDP-43, TAR DNA-binding 99.6 8.4E-16 2.9E-20 113.8 6.2 80 45-127 3-82 (88)
340 2hgm_A HNRPF protein, heteroge 99.6 9.3E-16 3.2E-20 120.4 6.7 80 129-211 39-120 (126)
341 2f3j_A RNA and export factor b 99.6 1.9E-15 6.6E-20 126.9 9.0 83 129-212 85-167 (177)
342 3egn_A RNA-binding protein 40; 99.6 3.4E-15 1.2E-19 121.3 10.1 83 44-126 42-133 (143)
343 3egn_A RNA-binding protein 40; 99.6 2.3E-15 7.9E-20 122.3 9.1 80 250-331 42-132 (143)
344 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-15 6.8E-20 111.7 7.8 76 252-331 4-80 (88)
345 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-15 4.6E-20 119.3 6.7 77 45-122 21-104 (123)
346 3q2s_C Cleavage and polyadenyl 99.6 1.5E-15 5.3E-20 133.0 7.8 75 252-328 67-149 (229)
347 2lcw_A RNA-binding protein FUS 99.4 9.7E-17 3.3E-21 125.5 0.0 79 251-331 5-97 (116)
348 2hgn_A Heterogeneous nuclear r 99.6 9.2E-16 3.2E-20 122.8 5.1 80 43-124 42-124 (139)
349 2hgm_A HNRPF protein, heteroge 99.6 2.2E-15 7.4E-20 118.3 6.8 79 43-123 38-121 (126)
350 2xs2_A Deleted in azoospermia- 99.6 2.4E-15 8.2E-20 114.7 6.1 75 252-330 8-87 (102)
351 2pe8_A Splicing factor 45; RRM 99.6 1.8E-14 6E-19 109.8 10.6 82 129-210 5-92 (105)
352 2dit_A HIV TAT specific factor 99.6 3.2E-14 1.1E-18 110.2 12.2 83 42-124 10-103 (112)
353 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-14 6.2E-19 122.8 11.7 117 94-212 63-187 (193)
354 2pe8_A Splicing factor 45; RRM 99.6 2.4E-14 8.3E-19 109.0 10.5 76 251-328 6-93 (105)
355 2dnl_A Cytoplasmic polyadenyla 99.5 2.7E-14 9.3E-19 111.0 9.7 78 129-209 5-85 (114)
356 3u1l_A PRE-mRNA-splicing facto 99.5 2.6E-14 8.9E-19 124.4 9.4 80 43-124 130-230 (240)
357 2dnl_A Cytoplasmic polyadenyla 99.5 3.2E-14 1.1E-18 110.6 9.0 74 44-120 5-85 (114)
358 2dit_A HIV TAT specific factor 99.5 1.4E-13 4.9E-18 106.5 12.6 79 251-331 13-104 (112)
359 2voo_A Lupus LA protein; RNA-b 99.5 7.8E-14 2.7E-18 118.8 10.9 74 253-329 109-187 (193)
360 2j8a_A Histone-lysine N-methyl 99.5 3.2E-14 1.1E-18 109.1 7.1 73 254-328 3-95 (136)
361 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.4E-18 105.0 9.7 75 251-327 3-95 (105)
362 3v4m_A Splicing factor U2AF 65 99.5 2.1E-13 7.3E-18 103.8 9.5 81 130-210 3-95 (105)
363 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.4E-17 98.1 12.4 74 254-331 11-92 (100)
364 3ue2_A Poly(U)-binding-splicin 99.4 4.7E-13 1.6E-17 103.8 9.3 80 131-210 19-107 (118)
365 3tht_A Alkylated DNA repair pr 99.4 5.7E-13 1.9E-17 122.3 10.6 78 249-328 14-98 (345)
366 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.7E-18 104.7 5.0 72 137-209 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.4 9.1E-13 3.1E-17 102.2 9.3 74 252-327 19-107 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.5E-12 1.2E-16 95.7 12.1 78 46-126 9-93 (100)
369 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6.1E-18 104.1 4.9 67 258-326 20-103 (104)
370 3s6e_A RNA-binding protein 39; 99.4 1.4E-12 4.9E-17 100.4 9.4 74 252-327 6-91 (114)
371 3s6e_A RNA-binding protein 39; 99.4 2.1E-12 7.2E-17 99.4 9.9 78 45-122 5-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 4.3E-12 1.5E-16 116.5 8.5 77 43-121 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 2E-11 7E-16 87.6 9.7 76 249-329 3-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 7.2E-11 2.5E-15 90.7 10.7 77 248-326 13-93 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.3E-10 4.6E-15 83.7 7.4 75 248-327 10-93 (95)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 2.6E-10 8.8E-15 81.9 7.4 76 44-124 4-87 (91)
377 1owx_A Lupus LA protein, SS-B, 99.1 5.3E-10 1.8E-14 85.9 9.4 77 43-121 14-94 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4E-14 78.8 6.1 73 44-121 12-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 5.8E-09 2E-13 90.9 11.2 66 145-210 142-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.9E-13 88.5 7.5 61 265-327 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 7.1E-08 2.4E-12 70.8 9.2 71 254-324 22-95 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.7 9.1E-07 3.1E-11 64.5 13.4 86 253-341 8-96 (104)
383 2dhx_A Poly (ADP-ribose) polym 98.6 4.2E-07 1.4E-11 66.3 10.7 90 44-145 5-99 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.6 3.4E-07 1.2E-11 67.2 8.9 71 46-118 20-95 (117)
385 1wey_A Calcipressin 1; structu 98.4 2.2E-06 7.5E-11 62.9 9.5 73 254-328 6-83 (104)
386 1whv_A Poly(A)-specific ribonu 98.0 3.3E-05 1.1E-09 55.6 8.2 54 48-106 17-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00012 4.2E-09 52.8 7.6 63 254-318 2-72 (91)
388 1wey_A Calcipressin 1; structu 97.7 0.00033 1.1E-08 51.3 9.2 74 132-211 5-83 (104)
389 1uw4_A UPF3X; nonsense mediate 97.6 0.00018 6.2E-09 51.9 7.5 65 48-112 2-72 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.5 0.00049 1.7E-08 52.0 8.9 71 253-327 24-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.5 9.7E-05 3.3E-09 53.3 4.0 52 50-106 9-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.00055 1.9E-08 51.7 8.0 73 45-121 22-95 (119)
393 1whv_A Poly(A)-specific ribonu 97.1 0.0026 8.7E-08 45.8 7.9 54 254-312 17-70 (100)
394 2l08_A Regulator of nonsense t 97.0 0.00059 2E-08 49.5 4.0 63 254-318 10-80 (97)
395 2l08_A Regulator of nonsense t 96.8 0.00089 3E-08 48.5 3.8 67 46-112 8-80 (97)
396 3p3d_A Nucleoporin 53; structu 96.7 0.0021 7.3E-08 49.2 5.0 74 47-122 7-98 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.7 0.00098 3.4E-08 63.3 3.7 54 48-103 54-107 (464)
398 3ctr_A Poly(A)-specific ribonu 96.7 0.0035 1.2E-07 45.3 5.6 54 254-312 7-60 (101)
399 3p3d_A Nucleoporin 53; structu 96.6 0.0025 8.7E-08 48.7 5.1 71 254-328 8-98 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.8 0.0054 1.8E-07 58.2 3.8 54 254-310 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 90.4 0.74 2.5E-05 44.5 8.1 55 48-107 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 84.2 3.9 0.00013 39.5 9.1 56 253-313 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 65.9 7 0.00024 26.4 3.9 61 264-327 12-75 (76)
404 2g0c_A ATP-dependent RNA helic 59.1 13 0.00046 25.0 4.4 58 58-120 12-74 (76)
405 2cu1_A Mitogen-activated prote 52.3 48 0.0016 23.7 6.1 68 258-329 21-88 (103)
406 4e8u_A Putative uncharacterize 47.7 36 0.0012 27.2 5.6 55 255-309 14-81 (172)
407 4e8u_A Putative uncharacterize 44.8 31 0.0011 27.6 4.8 53 49-102 14-80 (172)
408 4eyt_A Telomerase associated p 38.9 96 0.0033 21.5 8.6 68 45-118 10-77 (129)
409 4eyt_A Telomerase associated p 34.4 1.1E+02 0.0039 21.1 8.9 54 254-311 13-66 (129)
410 3fry_A Probable copper-exporti 31.2 1.1E+02 0.0036 19.7 6.2 55 47-104 6-60 (73)
411 4a4j_A Pacszia, cation-transpo 30.6 85 0.0029 19.7 4.7 55 254-310 4-61 (69)
412 3lpe_A Putative transcription 26.8 1.6E+02 0.0054 20.5 5.7 34 281-314 39-73 (92)
413 3ts2_A Protein LIN-28 homolog 25.7 21 0.00073 27.8 1.0 28 268-299 2-29 (148)
414 3dxs_X Copper-transporting ATP 25.0 1.4E+02 0.0047 19.0 6.6 55 254-310 4-62 (74)
415 3j21_T 50S ribosomal protein L 24.3 1.5E+02 0.0053 20.5 5.1 55 256-310 25-82 (86)
416 1x66_A Friend leukemia integra 23.6 37 0.0013 24.3 1.8 35 35-69 3-37 (98)
417 2e5p_A Protein PHF1, PHD finge 21.4 69 0.0024 20.9 2.5 19 280-300 28-46 (68)
418 1fme_A FSD-EY peptide; beta-BE 20.3 57 0.002 16.4 1.5 14 59-72 13-26 (28)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.9e-47 Score=347.99 Aligned_cols=239 Identities=21% Similarity=0.335 Sum_probs=218.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQ 125 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~ 125 (413)
++++|||+|||.++++++|+++|+.|| |.+|.+ .+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~--- 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT--- 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC---
Confidence 568999999999999999999999999 888888 66788999999999999999999999999999999998643
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
..+|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.++|..++|+.|.
T Consensus 95 ------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 95 ------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp ------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCC-CHHHHHHHhhccCccceEE
Q 015069 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEV-TSVDLHRHFHALCVGTIED 284 (413)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~e~L~~~F~~~~~G~i~~ 284 (413)
|.|+.++... ......++|||+|||..+ |+++|+++|+.| |.|.+
T Consensus 169 v~~a~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~ 214 (284)
T 3smz_A 169 VHWTDAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTF 214 (284)
T ss_dssp EEECCGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSE
T ss_pred EEECCCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCC--CCeEE
Confidence 9998654221 111334789999999995 999999999999 99999
Q ss_pred EEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 285 VRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 285 v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
+++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|++++.
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 999876 7999999999999999999999999999999999997543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-46 Score=343.80 Aligned_cols=246 Identities=17% Similarity=0.227 Sum_probs=210.0
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
....++.++|||+|||.++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456778999999999999999999999999999999999865 46899999999999999995 99999999999999
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCC-CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (413)
++ ..++|||+|||+++++++|+++|+.|| .|.+++++.++. |.++|||||+|.+.++|.+|++.++|.
T Consensus 114 ~~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 356899999999999999999999999 999999998854 889999999999999999999999999
Q ss_pred eecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCC-CCHHHHHHHhhc
Q 015069 198 WLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSE-VTSVDLHRHFHA 276 (413)
Q Consensus 198 ~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~ 276 (413)
.+.|+.|.|.++.+....... .......++|||+|||.. +|+++|+++|+.
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp EETTEECEEEECCCC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred EeCCcEEEEEECCCCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 999999999998755332111 112334588999999999 999999999999
Q ss_pred cCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 277 LCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 277 ~~~G~i~~v~~~~~-------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
| |.|.+|++.++ +|+|||+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 235 ~--G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 235 F--GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp G--SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred c--CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9 99999999764 689999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-34 Score=252.64 Aligned_cols=166 Identities=28% Similarity=0.457 Sum_probs=149.0
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..+.++|||+|||+++++++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee
Q 015069 209 AAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~ 288 (413)
+........ ....+|||+|||+.+|+++|+++|+.| |.|.+|+|+
T Consensus 92 ~~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~ 136 (213)
T 4f02_A 92 SQRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVV 136 (213)
T ss_dssp CCCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEE
T ss_pred ccccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhc--CCeEEEEee
Confidence 754321100 012579999999999999999999999 999999998
Q ss_pred cc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 289 RD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 289 ~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 137 ~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 137 CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 76 789999999999999999999999999999999999764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=238.47 Aligned_cols=162 Identities=43% Similarity=0.812 Sum_probs=152.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
|+|||+|||.++++++|+++|++||+|.+|.++.++ ++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 689999999999999999999999999999998775 36899999999999999999999999999999999997655
Q ss_pred CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 125 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
. .......+|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.++|..++|++|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 345567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 015069 205 RCNWAA 210 (413)
Q Consensus 205 ~v~~~~ 210 (413)
.|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-34 Score=250.88 Aligned_cols=166 Identities=31% Similarity=0.568 Sum_probs=148.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
..+.+||||+|||.++||++|+++|++||+|.+|+|++++ ++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4567899999999999999999999999999999999875 368999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 120 AYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 120 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
+...... ......+|||+|||+++++++|+++|+.||.|.+++|++|+ +.++|||||+|.+.++|.+|++.|+|..|
T Consensus 92 ~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSL-RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHH-HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccc-cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 8654322 22345689999999999999999999999999999999884 45799999999999999999999999999
Q ss_pred cCeEEEEEEccCC
Q 015069 200 GNRQIRCNWAAKG 212 (413)
Q Consensus 200 ~g~~i~v~~~~~~ 212 (413)
+|++|.|.++.++
T Consensus 169 ~g~~i~V~~a~~~ 181 (213)
T 4f02_A 169 NDRKVFVGRFKSR 181 (213)
T ss_dssp TTEECEEEECCCH
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998654
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.6e-33 Score=233.63 Aligned_cols=161 Identities=27% Similarity=0.480 Sum_probs=150.4
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
++++|||+|||.++++++|+++|+.||+|.+|.+++++. +|||||+|.+.++|.+|++.+++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 578999999999999999999999999999999998753 6899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
+... ....++|+|+|||.++++++|+++|+.||.|.++++.+++.++.++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6543 3456799999999999999999999999999999999998899999999999999999999999999999987
Q ss_pred --eEEEEEEc
Q 015069 202 --RQIRCNWA 209 (413)
Q Consensus 202 --~~i~v~~~ 209 (413)
++|.|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999885
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.4e-33 Score=239.82 Aligned_cols=171 Identities=18% Similarity=0.355 Sum_probs=148.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...+.++|||+|||.++++++|+++|+.||+|.+|.++.++. +|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 455688999999999999999999999999999999998753 6799999999999999997 59999999999999
Q ss_pred ecccCCCCC---CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 119 WAYASSQRE---DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 119 ~~~~~~~~~---~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
++....... .....++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 987654322 233458999999999999999999999999999999999988999999999999999999999985 8
Q ss_pred CceecCeEEEEEEccCCCCC
Q 015069 196 GKWLGNRQIRCNWAAKGATS 215 (413)
Q Consensus 196 g~~l~g~~i~v~~~~~~~~~ 215 (413)
+..++|+.|.|.|+.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999876544
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8e-33 Score=243.02 Aligned_cols=169 Identities=23% Similarity=0.432 Sum_probs=153.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.+.++|||+|||.++++++|+++|+.||+|.+|++++++ .+|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 345899999999999999999999999999999998764 5889999999999999999999999999999999987
Q ss_pred ccCCCC--------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 015069 121 YASSQR--------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIN 192 (413)
Q Consensus 121 ~~~~~~--------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~ 192 (413)
...... ......++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 654322 123456799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceecCeEEEEEEccCCC
Q 015069 193 DLNGKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 193 ~l~g~~l~g~~i~v~~~~~~~ 213 (413)
.|+|..|+|+.|.|.|+..+.
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999997654
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.2e-33 Score=246.65 Aligned_cols=174 Identities=25% Similarity=0.451 Sum_probs=148.0
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999987654
Q ss_pred CCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-
Q 015069 212 GATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~- 290 (413)
........ ... .......++|||+|||..+|+++|+++|+.| |.|.+|++.++
T Consensus 108 ~~~~~~~~--------~~~----------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~ 161 (216)
T 2qfj_A 108 IGQAQPII--------DQL----------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDP 161 (216)
T ss_dssp CGGGHHHH--------HHH----------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECT
T ss_pred ccccchhh--------hhh----------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecC
Confidence 32110000 000 0011234789999999999999999999999 99999999876
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 291 -----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 291 -----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
+|+|||+|.+.++|.+|++.|||..|+|++|+|.|++++..
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 78999999999999999999999999999999999987643
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.6e-32 Score=231.25 Aligned_cols=159 Identities=34% Similarity=0.527 Sum_probs=147.0
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
++++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
+... ....++|||+|||..+++++|+++|+.| |.|.++++.++
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEc
Confidence 5421 1223789999999999999999999999 99999999876
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEec
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWG 326 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a 326 (413)
+|+|||+|.+.++|.+|++.|||..|.| ++|+|+||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4899999999999999999999999988 99999986
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-32 Score=231.61 Aligned_cols=161 Identities=34% Similarity=0.539 Sum_probs=148.7
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
++++|||+|||.++++++|+++|+.||+|.+|.+++++. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 368999999999999999999999999999999998762 5899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
+... .....+|+|+|||.++++++|+++|+.||.|.++++..++.+|.++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 81 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 81 PSSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CCCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 6543 3456789999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eE--EEEEEc
Q 015069 202 RQ--IRCNWA 209 (413)
Q Consensus 202 ~~--i~v~~~ 209 (413)
+. |.|.|+
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 65 888875
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=229.99 Aligned_cols=160 Identities=26% Similarity=0.523 Sum_probs=145.1
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++|||+|||+++++++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999885 5789999999999999999999999999999999999998554
Q ss_pred CCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--
Q 015069 213 ATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-- 290 (413)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-- 290 (413)
... ...+..+|||+|||..+|+++|+++|+.| |.|.++++.++
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCC
Confidence 321 12234789999999999999999999999 99999999865
Q ss_pred ----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 291 ----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 291 ----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
+|+|||+|.+.++|.+|++.|||..|+|++|+|.|++.
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 68999999999999999999999999999999999863
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.2e-32 Score=228.39 Aligned_cols=158 Identities=29% Similarity=0.484 Sum_probs=145.1
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
+++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-
Q 015069 212 GATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD- 290 (413)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~- 290 (413)
.... ...++|||+|||..+++++|+++|+.| |.|.++++.++
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecC
Confidence 3210 123679999999999999999999999 99999999865
Q ss_pred -----ccEEEEEeCCHHHHHHHHHHhCCCeeCCee--EEEEec
Q 015069 291 -----KGFGFVRYSTHPEAALAIQMGNARILCGKP--IKCSWG 326 (413)
Q Consensus 291 -----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~--l~V~~a 326 (413)
+|+|||+|.+.++|.+|++.|||..|.|+. |+|+||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 689999999999999999999999999975 888886
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.6e-32 Score=235.09 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=147.0
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445678999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred EEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEE
Q 015069 207 NWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR 286 (413)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~ 286 (413)
.++........ +......++|||+|||.++|+++|+++|+.| |.|.+|+
T Consensus 87 ~~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~ 135 (196)
T 1l3k_A 87 KRAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIE 135 (196)
T ss_dssp EECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEE
T ss_pred ecccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEE
Confidence 99865432110 1112334789999999999999999999999 9999999
Q ss_pred eecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q 015069 287 VQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 332 (413)
Q Consensus 287 ~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~ 332 (413)
+.++ +|||||+|.+.++|.+|++. +|..|+|+.|+|.|+.++...
T Consensus 136 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9865 68999999999999999987 899999999999999876543
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3.7e-32 Score=229.93 Aligned_cols=159 Identities=23% Similarity=0.446 Sum_probs=145.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~ 113 (413)
+++++|||+|||.++++++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 457899999999999999999999999 6 66666664 45789999999999999999 7999999999
Q ss_pred ceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015069 114 PIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAIND 193 (413)
Q Consensus 114 ~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~ 193 (413)
.|.|.++.... .....++|||+|||.++++++|+++|+.||.|.++++.+++.+|.++|+|||+|.+.++|.+|++.
T Consensus 79 ~i~v~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 79 SLKIRRPHDYQ---PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp ECEEECCSSCC---CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeeecCCcccC---CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 99999876543 234478899999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceecCeEEEEEEc
Q 015069 194 LNGKWLGNRQIRCNWA 209 (413)
Q Consensus 194 l~g~~l~g~~i~v~~~ 209 (413)
++|..++|+.|.|.|+
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999987
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=9.8e-32 Score=237.89 Aligned_cols=196 Identities=18% Similarity=0.294 Sum_probs=152.2
Q ss_pred CCCCCCceEEEcCCCc-ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 127 EDTSGHFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
....++++|||+|||+ ++++++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++.++|..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456678999999999 99999999999999999999999774 78999999999999999999999999999999
Q ss_pred EEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCcc-ceEE
Q 015069 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIED 284 (413)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G-~i~~ 284 (413)
|.++.........................................++.++|||+|||..+++++|+++|+.| | .|.+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~ 181 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKG 181 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeE
Confidence 999876532211111000000000000000000000001111234567999999999999999999999999 9 9999
Q ss_pred EEeec-cccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEEecCCC
Q 015069 285 VRVQR-DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 329 (413)
Q Consensus 285 v~~~~-~kg~afV~f~~~~~A~~A~~~l~g~~l~-gr~l~V~~a~~~ 329 (413)
|++.+ ++|+|||+|.+.++|.+|++.|||..|. |++|+|.|++++
T Consensus 182 v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 182 FKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99955 7999999999999999999999999999 999999999864
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.3e-32 Score=229.63 Aligned_cols=163 Identities=22% Similarity=0.389 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC------CCceEEEEEcCHHHHHHHHHHhCCCccc---Ccce
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD------KSSYGFVDYFDRRSAALAIVTLNGRHIF---GQPI 115 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~------~~g~afV~F~~~~~A~~A~~~l~~~~i~---g~~l 115 (413)
+++++|||+|||.++++++|+++|++||+|.+|++++++ ++|||||+|.+.++|.+|++.+++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999999999874 4579999999999999999999998876 5778
Q ss_pred EEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 015069 116 KVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 195 (413)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~ 195 (413)
.+.++.... ......++|||+|||+++++++|+++|+.||.|.++++.+++ +|.++|||||+|.+.++|.+|++.|+
T Consensus 81 ~~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 81 QMKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 887765543 334467789999999999999999999999999999999985 68999999999999999999999999
Q ss_pred Cceec---CeEEEEEEcc
Q 015069 196 GKWLG---NRQIRCNWAA 210 (413)
Q Consensus 196 g~~l~---g~~i~v~~~~ 210 (413)
|..+. |++|.|.|++
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 98765 4999999973
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.1e-31 Score=227.64 Aligned_cols=161 Identities=22% Similarity=0.381 Sum_probs=143.1
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceec---CeEEE
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTG--RSRGFGFVSFRNQEDAQSAINDLNGKWLG---NRQIR 205 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~l~---g~~i~ 205 (413)
+.++|||+|||+++++++|+++|+.||+|.++++++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998887 89999999999999999999999998775 57777
Q ss_pred EEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEE
Q 015069 206 CNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV 285 (413)
Q Consensus 206 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v 285 (413)
+.++...... ....++|||+|||..+|+++|+++|+.| |.|.++
T Consensus 82 ~~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSF--GQIEEC 125 (175)
T ss_dssp EEECGGGCCS----------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEE
T ss_pred Eccccccccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEE
Confidence 7776443221 1133789999999999999999999999 999999
Q ss_pred Eeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeC---CeeEEEEecC
Q 015069 286 RVQRD-----KGFGFVRYSTHPEAALAIQMGNARILC---GKPIKCSWGS 327 (413)
Q Consensus 286 ~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~---gr~l~V~~a~ 327 (413)
++.++ +|+|||+|.+.++|.+|++.|||..+. |++|+|.||.
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99876 789999999999999999999998775 4999999974
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=8.5e-32 Score=233.17 Aligned_cols=166 Identities=22% Similarity=0.426 Sum_probs=147.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~ 113 (413)
+.+++|||+|||.++++++|+++|+.| | .|.++.+ .+++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 457899999999999999999999999 4 4555555 456789999999999999999 7999999999
Q ss_pred ceEEEecccCCCC-----------------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccE
Q 015069 114 PIKVNWAYASSQR-----------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGF 176 (413)
Q Consensus 114 ~l~v~~~~~~~~~-----------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~ 176 (413)
.|.|.++...... ......++|||+|||.++++++|+++|+.||.|.++++.+++.+|.++||
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 9999998754221 11245689999999999999999999999999999999999889999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 015069 177 GFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 177 afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~ 213 (413)
|||+|.+.++|.+|++.|+|..++|+.|.|.|+.++.
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999997654
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=2.5e-31 Score=243.25 Aligned_cols=196 Identities=19% Similarity=0.306 Sum_probs=151.3
Q ss_pred CCCCCceEEEcCCCcccChHHHH----hhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLF----ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~ 203 (413)
+..++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.++|..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999976 8999999999999884 6889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCccccCCCccc-------------------cc---------ccCCC---------------------
Q 015069 204 IRCNWAAKGATSGDEKQSSDSKSV-------------------VE---------LTNGI--------------------- 234 (413)
Q Consensus 204 i~v~~~~~~~~~~~~~~~~~~~~~-------------------~~---------~~~~~--------------------- 234 (413)
|+|.|+.................. .. ...+.
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998655431100000000000 00 00000
Q ss_pred ---------Cccc------------------cccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEe
Q 015069 235 ---------SEDG------------------QEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 287 (413)
Q Consensus 235 ---------~~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~ 287 (413)
.... ............++.++|||+|||..+|+++|+++|+.| |.|.+|++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~ 239 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEE
Confidence 0000 000000011234567899999999999999999999999 99999999
Q ss_pred eccc-cEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEEecCC
Q 015069 288 QRDK-GFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSK 328 (413)
Q Consensus 288 ~~~k-g~afV~f~~~~~A~~A~~~l~g~~l~-gr~l~V~~a~~ 328 (413)
.+++ |+|||+|.+.++|.+|++.|||..|. |+.|+|.|++.
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 9886 99999999999999999999999999 99999999874
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=1.5e-31 Score=231.65 Aligned_cols=191 Identities=18% Similarity=0.296 Sum_probs=149.7
Q ss_pred CceEEEcCCCc-ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 132 HFNVFVGDLSP-EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 132 ~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
+++|||+|||+ ++++++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 56899999999 99999999999999999999998764 7899999999999999999999999999999999987
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCcc-ceEEEEeec
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQR 289 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G-~i~~v~~~~ 289 (413)
........................................++.++|||+|||..+++++|+++|+.| | .|.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESS
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEe
Confidence 6543221111110000000000000000000111112234567999999999999999999999999 9 999999965
Q ss_pred -cccEEEEEeCCHHHHHHHHHHhCCCeeC-CeeEEEEecCCC
Q 015069 290 -DKGFGFVRYSTHPEAALAIQMGNARILC-GKPIKCSWGSKP 329 (413)
Q Consensus 290 -~kg~afV~f~~~~~A~~A~~~l~g~~l~-gr~l~V~~a~~~ 329 (413)
++|+|||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 6999999999999999999999999999 999999999764
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1e-31 Score=232.47 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=141.1
Q ss_pred CCCCeEEEcCCC-ccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 45 STCRSVYVGNIH-PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 45 ~~~~tv~V~nLp-~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.++++|||+||| .++++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|++.|||..+.|+.|+|.+++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 357899999999 89999999999999999999999876 4799999999999999999999999999999999998633
Q ss_pred CCCC----------------------------------CCCCCceEEEcCCCcccChHHHHhhhccCCCe--eeEEEeec
Q 015069 124 SQRE----------------------------------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC--SDARVMWD 167 (413)
Q Consensus 124 ~~~~----------------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~~~i~~d 167 (413)
.... ...++++|||+|||+++++++|+++|+.||.| .+++++.+
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 2100 01235679999999999999999999999999 88998877
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe----EEEEEEc
Q 015069 168 QKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR----QIRCNWA 209 (413)
Q Consensus 168 ~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~----~i~v~~~ 209 (413)
+ +.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|+++
T Consensus 161 ~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 K--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp C--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred C--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4 55679999999999999999999999999876 5666654
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=1.8e-32 Score=230.79 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=147.3
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
++++|||+|||.++++++|+++|+.||+|.+|++++++ ++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 57899999999999999999999999999999998864 47899999999999999997 4678999999999886
Q ss_pred cCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
+... ....++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++ +++..++|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5432 2345689999999999999999999999999999999998899999999999999999999998 89999999
Q ss_pred eEEEEEEccCC
Q 015069 202 RQIRCNWAAKG 212 (413)
Q Consensus 202 ~~i~v~~~~~~ 212 (413)
++|.|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999998764
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.5e-32 Score=228.31 Aligned_cols=159 Identities=26% Similarity=0.453 Sum_probs=143.5
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
++++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999998 4678999999988874
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD 290 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~ 290 (413)
+... .....+|||+|||..+|+++|+++|+.| |.|.++++.++
T Consensus 80 ~~~~-----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDE-----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLD 122 (167)
T ss_dssp CHHH-----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCS
T ss_pred chhh-----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEc
Confidence 3210 0113679999999999999999999999 99999999876
Q ss_pred ------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 291 ------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 291 ------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
+|+|||+|.+.++|.+|++ +||..|+|++|+|.|++++
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999998 8999999999999999764
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=8.3e-31 Score=226.82 Aligned_cols=190 Identities=13% Similarity=0.152 Sum_probs=142.9
Q ss_pred CCCceEEEcCCC-cccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 130 SGHFNVFVGDLS-PEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 130 ~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
.++.+|||+||| .++++++|+++|+.||.|.+++++++ ++|||||+|.+.++|.+|++.|+|..+.|++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 346789999999 89999999999999999999999865 379999999999999999999999999999999999
Q ss_pred ccCCCCCCCcc-ccCCCcccccccCCCCcccccc-CCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccce--EE
Q 015069 209 AAKGATSGDEK-QSSDSKSVVELTNGISEDGQEK-SNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI--ED 284 (413)
Q Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i--~~ 284 (413)
+.......... ...................... .........++.++|||+|||+++|+++|+++|++| |.| .+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~--G~v~~~~ 154 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL--GVKRPTS 154 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH--TCCCCSE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCcceEE
Confidence 86543211100 0000000000000000000000 000011123566899999999999999999999999 998 89
Q ss_pred EEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe----eEEEEec
Q 015069 285 VRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK----PIKCSWG 326 (413)
Q Consensus 285 v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr----~l~V~~a 326 (413)
+++..+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|+||
T Consensus 155 v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999876 58999999999999999999999999886 6777765
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=8e-31 Score=232.04 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=145.8
Q ss_pred CCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 43 DASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
...++++|||+|||. ++++++|+++|+.||+|.+|++++++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345688999999999 99999999999999999999999876 7899999999999999999999999999999999987
Q ss_pred cCCCC--------------------------------CCCCCCceEEEcCCCcccChHHHHhhhccCC-CeeeEEEeecC
Q 015069 122 ASSQR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQ 168 (413)
Q Consensus 122 ~~~~~--------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~d~ 168 (413)
..... ....++++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 54210 0013367899999999999999999999999 9999999742
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceec-CeEEEEEEccC
Q 015069 169 KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAK 211 (413)
Q Consensus 169 ~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-g~~i~v~~~~~ 211 (413)
.+|+|||+|.+.++|.+|++.|+|..+. |+.|+|.|+.+
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 3789999999999999999999999999 99999999865
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.3e-30 Score=237.07 Aligned_cols=168 Identities=25% Similarity=0.405 Sum_probs=156.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
+.++|||+|||.++++++|+++|+.||.|..|.++.++ ++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999875 36799999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEcCCCccc-ChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 122 ASSQREDTSGHFNVFVGDLSPEV-TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 122 ~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
+..........++|||+|||.++ ++++|+++|+.||.|.++++..+. +|+++|+|||+|.+.++|.+|++.|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88777777788999999999995 999999999999999999999885 7999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 015069 201 NRQIRCNWAAKGAT 214 (413)
Q Consensus 201 g~~i~v~~~~~~~~ 214 (413)
|++|.|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999976643
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.4e-30 Score=220.84 Aligned_cols=164 Identities=18% Similarity=0.356 Sum_probs=143.7
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEE---ecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~---~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
....+.++|||+|||.++++++|+++|+.||.+..+.+. ..+++|||||+|.+.++|.+|++ |+|..|.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 345678999999999999999999999999876552222 23568999999999999999995 99999999999999
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
++.+... ......++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..
T Consensus 87 ~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 87 KPKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp CCCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred cCCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 9976543 334567899999999999999999999999988765 4678999999999999999999999999999
Q ss_pred ecCeEEEEEEccCC
Q 015069 199 LGNRQIRCNWAAKG 212 (413)
Q Consensus 199 l~g~~i~v~~~~~~ 212 (413)
++|+.|.|.|+.++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999998764
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.9e-31 Score=224.37 Aligned_cols=164 Identities=23% Similarity=0.382 Sum_probs=143.0
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||.++++++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ ++|..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4566789999999999999999999999998876 344555778999999999999999999995 99999999999999
Q ss_pred EccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEe
Q 015069 208 WAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV 287 (413)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~ 287 (413)
++..+... .....++|||+|||..+|+++|+++|+.| |.|..+ .
T Consensus 87 ~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~-~ 130 (175)
T 1fje_B 87 KPKGRDSK---------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-S 130 (175)
T ss_dssp CCCCSSCS---------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE-C
T ss_pred cCCCcccc---------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe-c
Confidence 98654221 11234789999999999999999999999 999888 2
Q ss_pred e--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 288 Q--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 288 ~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
. +++|+|||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 131 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 2 23899999999999999999999999999999999999764
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5e-30 Score=234.57 Aligned_cols=163 Identities=20% Similarity=0.401 Sum_probs=145.2
Q ss_pred CCCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEec-CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
+..++++|||+|||.++++++|+ ++|+.||.|.+|++.+. +.+|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45668999999999999999977 89999999999998864 35799999999999999999999999999999999
Q ss_pred EecccCCCC-----------------------------------------------------------------------
Q 015069 118 NWAYASSQR----------------------------------------------------------------------- 126 (413)
Q Consensus 118 ~~~~~~~~~----------------------------------------------------------------------- 126 (413)
.|+......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654320
Q ss_pred -------------------------------------CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCC
Q 015069 127 -------------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQK 169 (413)
Q Consensus 127 -------------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~ 169 (413)
......++|||+|||.++++++|+++|+.||.|.+++++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 112245789999999999999999999999999999999653
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceec-CeEEEEEEcc
Q 015069 170 TGRSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAA 210 (413)
Q Consensus 170 ~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-g~~i~v~~~~ 210 (413)
+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|+.
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 689999999999999999999999999 9999999974
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.9e-30 Score=232.12 Aligned_cols=163 Identities=25% Similarity=0.389 Sum_probs=147.3
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
|......+.++|||+|||.++|+++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..++|..|.|+.|.|.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3344456678999999999999999999999999999999964 46899999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCc
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGK 197 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~ 197 (413)
++.+ ..+|||+|||+.+++++|+++|+.||.|.+++++.| .+|+++|||||+|.+.++|.+|++.+ ++.
T Consensus 92 ~a~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 92 FATH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ECCC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred eccc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 9864 458999999999999999999999999999999999 68999999999999999999999999 455
Q ss_pred eec---CeEEEEEEccCCC
Q 015069 198 WLG---NRQIRCNWAAKGA 213 (413)
Q Consensus 198 ~l~---g~~i~v~~~~~~~ 213 (413)
.+. +++|.|.++....
T Consensus 162 ~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSSSCCBCEEEECCCEE
T ss_pred EEecCCCceEEEeeccccC
Confidence 554 9999999987543
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=7.5e-30 Score=220.90 Aligned_cols=177 Identities=14% Similarity=0.252 Sum_probs=143.1
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCC-----------CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFP-----------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-----------~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
..++|||+|||+++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 457899999999999999999999994 4444444 466899999999999999999 7999999
Q ss_pred cCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCc
Q 015069 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 279 (413)
Q Consensus 200 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~ 279 (413)
.|+.|.|.++.............. ...+.........+.++|||+|||..+++++|+++|+.|
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-- 138 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF-- 138 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB--
T ss_pred cCceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc--
Confidence 999999998866533221110000 000011112223456899999999999999999999999
Q ss_pred cceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q 015069 280 GTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 280 G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~ 331 (413)
|.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 139 G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 139 GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999876 78999999999999999999999999999999999987643
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2e-30 Score=224.46 Aligned_cols=160 Identities=22% Similarity=0.369 Sum_probs=143.8
Q ss_pred CCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 46 TCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 46 ~~~tv~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
.+++|||+|||. ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 368999999999 99999999999999999999998876 7899999999999999999999999999999999987542
Q ss_pred CC--------------------------------CCCCCCceEEEcCCCcccChHHHHhhhccCC-CeeeEEEeecCCCC
Q 015069 125 QR--------------------------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTG 171 (413)
Q Consensus 125 ~~--------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~d~~~~ 171 (413)
.. ....++++|||+|||.++++++|+++|+.|| .|.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---- 156 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 156 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----
Confidence 11 0113467899999999999999999999999 9999999753
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceec-CeEEEEEEccC
Q 015069 172 RSRGFGFVSFRNQEDAQSAINDLNGKWLG-NRQIRCNWAAK 211 (413)
Q Consensus 172 ~~~g~afV~f~~~~~A~~a~~~l~g~~l~-g~~i~v~~~~~ 211 (413)
.+|+|||+|.+.++|.+|++.++|..++ |++|.|.|+.+
T Consensus 157 -~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 -DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp -TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred -CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3799999999999999999999999999 99999999865
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7e-30 Score=215.95 Aligned_cols=153 Identities=16% Similarity=0.347 Sum_probs=135.9
Q ss_pred CCceEEEcCCCcccChHHHHhhhccC----C-------CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVF----P-------TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL 199 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 199 (413)
+.++|||+|||+++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35789999999999999999999999 6 66666654 55899999999999999999 7999999
Q ss_pred cCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCc
Q 015069 200 GNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCV 279 (413)
Q Consensus 200 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~ 279 (413)
.|++|.|.++...... ...++|||+|||..+|+++|+++|++|
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~-- 118 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSF-- 118 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTT--
T ss_pred cCceeeecCCcccCCC-----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhc--
Confidence 9999999886443211 114779999999999999999999999
Q ss_pred cceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 280 GTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 280 G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
|.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|+||.
T Consensus 119 G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 119 GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999876 6899999999999999999999999999999999973
No 35
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.5e-30 Score=236.10 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=147.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
...++|||+|||.++++++|+++|+.|| +|..|.++.++ .+|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999 99999998865 5899999999999999999999999999999999999
Q ss_pred ccCCCCC----CCCCCceEEEcCCCcc-cChHHHHhhhccCCCeeeEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHh
Q 015069 121 YASSQRE----DTSGHFNVFVGDLSPE-VTDATLFACFSVFPTCSDARVMWDQK-TGRSRGFGFVSFRNQEDAQSAINDL 194 (413)
Q Consensus 121 ~~~~~~~----~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~d~~-~~~~~g~afV~f~~~~~A~~a~~~l 194 (413)
.+..... .....++|||+|||.+ +++++|+++|+.||.|.+++++.+.. ||.++|||||+|.+.++|.+|+ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 7665432 3456789999999999 99999999999999999999998865 5999999999999999999999 99
Q ss_pred CCceecCeEEEEEEccCC
Q 015069 195 NGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 195 ~g~~l~g~~i~v~~~~~~ 212 (413)
+|..|+|+.|.|.|+.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999765
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.3e-28 Score=220.54 Aligned_cols=153 Identities=26% Similarity=0.420 Sum_probs=139.1
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||+++++++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..++|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45567899999999999999999999999999999873 479999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee
Q 015069 209 AAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ 288 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~ 288 (413)
+.. ..+|||+|||..+|+++|+++|+.| |.|.+|++.
T Consensus 93 a~~-----------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~ 129 (261)
T 3sde_A 93 ATH-----------------------------------------GAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVV 129 (261)
T ss_dssp CCC-----------------------------------------SSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEE
T ss_pred ccc-----------------------------------------CCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEee
Confidence 753 1679999999999999999999999 999999998
Q ss_pred cc-----ccEEEEEeCCHHHHHHHHHHhC-CCeeC---CeeEEEEecCCCC
Q 015069 289 RD-----KGFGFVRYSTHPEAALAIQMGN-ARILC---GKPIKCSWGSKPT 330 (413)
Q Consensus 289 ~~-----kg~afV~f~~~~~A~~A~~~l~-g~~l~---gr~l~V~~a~~~~ 330 (413)
.+ +|+|||+|.+.++|.+|+..|| |..+. +++|.|.++....
T Consensus 130 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 130 VDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred eCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 76 7999999999999999999995 44554 9999999997653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=2.1e-22 Score=167.32 Aligned_cols=139 Identities=23% Similarity=0.306 Sum_probs=112.5
Q ss_pred eEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCccc-------CcceEEEecccC---CCCCCCCCCceEEEcCCCcc
Q 015069 76 GCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIF-------GQPIKVNWAYAS---SQREDTSGHFNVFVGDLSPE 143 (413)
Q Consensus 76 ~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~-------g~~l~v~~~~~~---~~~~~~~~~~~l~v~nl~~~ 143 (413)
+++++.++ .+|||||+|.+.++|.+|++.+++.... +........... ..........+|||+|||++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 35566654 5799999999999999999887753322 222222222211 12233345689999999999
Q ss_pred cChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCC
Q 015069 144 VTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (413)
Q Consensus 144 ~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~ 214 (413)
+++++|+++|+.||.|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..++|++|.|.|+.++..
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999976543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=6.7e-22 Score=164.22 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=107.5
Q ss_pred eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccc
Q 015069 161 DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQE 240 (413)
Q Consensus 161 ~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (413)
.+.++.+.. +++||+||+|.+.++|++|++.+++....+..+.+........ . ...
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~----~------------------~~~ 57 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT----V------------------TEG 57 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE----E------------------ECC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc----c------------------ccc
Confidence 356666643 6899999999999999999988876433222222211100000 0 000
Q ss_pred cCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCC
Q 015069 241 KSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNAR 314 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~ 314 (413)
.............++|||+|||+.+|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 0001112223445899999999999999999999999 99999999875 689999999999999999999999
Q ss_pred eeCCeeEEEEecCCCCC
Q 015069 315 ILCGKPIKCSWGSKPTP 331 (413)
Q Consensus 315 ~l~gr~l~V~~a~~~~~ 331 (413)
.|+|++|+|.|+++..+
T Consensus 136 ~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 136 VLDGRELRVQMARYGRP 152 (158)
T ss_dssp ESSSSEEEEEEECCSSC
T ss_pred EECCeEEEEEECCCCCC
Confidence 99999999999987644
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=3.2e-22 Score=164.54 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=112.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCC
Q 015069 171 GRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPEN 249 (413)
Q Consensus 171 ~~~~g~afV~f~~~~~A~~a~~~l-~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (413)
...+|+++|+|.+.++|++|++.+ +|..++| .+.+.++........... ..........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-------------------HHHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-------------------SCCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-------------------cccccccccC
Confidence 467899999999999999999999 9999999 999987644221100000 0000112223
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
..+.++|||+|||+++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 3455899999999999999999999999 99999999998 99999999999999999999999999999999999976
Q ss_pred C
Q 015069 329 P 329 (413)
Q Consensus 329 ~ 329 (413)
+
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=9.4e-22 Score=153.80 Aligned_cols=103 Identities=24% Similarity=0.460 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.+.+|||+|||+++++++|+++|++||+|.+|+|+.++. +|||||+|.+.++|.+|++.|++..|.|+.|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356899999999999999999999999999999998865 789999999999999999999999999999999998765
Q ss_pred CCCCC-----CCCCceEEEcCCCcccChHH
Q 015069 124 SQRED-----TSGHFNVFVGDLSPEVTDAT 148 (413)
Q Consensus 124 ~~~~~-----~~~~~~l~v~nl~~~~~~~~ 148 (413)
..+.. .....+|||+|||+++|++-
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 22345799999999998763
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.4e-21 Score=152.76 Aligned_cols=110 Identities=28% Similarity=0.510 Sum_probs=74.8
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
...+|||+|||+++++++|+++|+.||.|.+++|++|+ +.+||||||+|.+.++|.+|++.|+|..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35679999999999999999999999999999999985 4589999999999999999999999999999999999986
Q ss_pred CCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHH
Q 015069 211 KGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 269 (413)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~ 269 (413)
.+....... ........+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-------------------------------------------------------
T ss_pred Ccccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 543221110 01111235699999999999874
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.9e-21 Score=158.76 Aligned_cols=124 Identities=20% Similarity=0.294 Sum_probs=111.0
Q ss_pred CCCceEEEEEcCHHHHHHHHHHh-CCCcccCcceEEEecccC-------------CCCCCCCCCceEEEcCCCcccChHH
Q 015069 83 DKSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWAYAS-------------SQREDTSGHFNVFVGDLSPEVTDAT 148 (413)
Q Consensus 83 ~~~g~afV~F~~~~~A~~A~~~l-~~~~i~g~~l~v~~~~~~-------------~~~~~~~~~~~l~v~nl~~~~~~~~ 148 (413)
+-+|+++|+|.+.++|.+|++.+ ||..+.| .+.+.++... .........++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 34789999999999999999999 9999999 9999987652 1233445678999999999999999
Q ss_pred HHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 149 LFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 149 l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
|+++|+.||.|.+++++++ ++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.++
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999865 5899999999999999999999999999999999998665
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=139.74 Aligned_cols=81 Identities=32% Similarity=0.514 Sum_probs=77.5
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
.+++|||+|||+++++++|+++|+.||.|.++++++|+.+|+++|||||+|.+.++|.+|++.|+|..++|++|+|+|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C
Q 015069 211 K 211 (413)
Q Consensus 211 ~ 211 (413)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=137.19 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=73.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEEEecCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWGSK 328 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~l~gr~l~V~~a~~ 328 (413)
++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++ ..|.||+|+|.|+++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 345889999999999999999999999 9999999999999999999999999999998864 789999999999987
Q ss_pred CCCC
Q 015069 329 PTPP 332 (413)
Q Consensus 329 ~~~~ 332 (413)
+...
T Consensus 92 ~~~~ 95 (105)
T 1sjq_A 92 KELK 95 (105)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=134.93 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCe--eCCeeEEEEe
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARI--LCGKPIKCSW 325 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~--l~gr~l~V~~ 325 (413)
...++.++|||+|||+++|+++|+++|++| |.|.+|+++++||+|||+|.+.++|.+|++.||+.. |.||+|+|.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 445567899999999999999999999999 999999999999999999999999999999999885 7899999999
Q ss_pred cCCCC
Q 015069 326 GSKPT 330 (413)
Q Consensus 326 a~~~~ 330 (413)
++++.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98753
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=136.57 Aligned_cols=74 Identities=34% Similarity=0.492 Sum_probs=70.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.++|||+|||+++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4789999999999999999999999 99999999865 689999999999999999999999999999999999
Q ss_pred CC
Q 015069 327 SK 328 (413)
Q Consensus 327 ~~ 328 (413)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 74
No 47
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3.3e-19 Score=128.04 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
...|+|+||++.+|+++|+++|.+| |+|.++++..+||||||+|.+.++|.+|++.||+..+.||+|+|.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4679999999999999999999999 999999999999999999999999999999999999999999999984
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=136.42 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=77.2
Q ss_pred CceEEEcCCCcccChHHHHhhhccCC-CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceecCeEEEEEEc
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFP-TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 209 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~l~g~~i~v~~~ 209 (413)
+++|||+|||+++++++|+++|+.|| .|.++++++|+.+|.+||||||+|.+.++|.+|++.+ ++..++|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999977 456799999999999
Q ss_pred cCCCCC
Q 015069 210 AKGATS 215 (413)
Q Consensus 210 ~~~~~~ 215 (413)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=136.76 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
.+.++|||+|||+++++++|+++|++||.|.+++|++|+.+++++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 015069 210 AKG 212 (413)
Q Consensus 210 ~~~ 212 (413)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=134.32 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=72.6
Q ss_pred CcccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeEEEEecC
Q 015069 251 PQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWGS 327 (413)
Q Consensus 251 ~~~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~gr~l~V~~a~ 327 (413)
.+.++|||+|||+ ++|+++|+++|++| |.|.+|++++++|||||+|.+.++|.+|++.||+. .|.||+|+|.|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 3568999999999 99999999999999 99999999999999999999999999999998864 5999999999998
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 644
No 51
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2e-19 Score=140.81 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=93.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.++++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 457899999999999999999999999999999998765 4789999999999999999999999999999999999765
Q ss_pred CCCCCCCCCceEEEcCCCcccChHHHHhhhccCCC
Q 015069 124 SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPT 158 (413)
Q Consensus 124 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 158 (413)
... .+++...++++|.++|++||.
T Consensus 86 ~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 432 577888999999999999984
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=130.87 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh--CCCeeCCeeEEEEec
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG--NARILCGKPIKCSWG 326 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l--~g~~l~gr~l~V~~a 326 (413)
..++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.| ++..|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34556899999999999999999999999 99999999999999999999999999999976 567899999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
+.....
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 53
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=131.47 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCc--ccCcc
Q 015069 37 NLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH--IFGQP 114 (413)
Q Consensus 37 ~~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~--i~g~~ 114 (413)
+.+......++++|||+|||+++++++|+++|++||.|.+|.+++ .+|+|||+|.+.++|.+|++.+++.. |.|++
T Consensus 11 ~~~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 11 NYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp ------CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 455666677899999999999999999999999999999999975 46799999999999999999999876 78999
Q ss_pred eEEEecccCC
Q 015069 115 IKVNWAYASS 124 (413)
Q Consensus 115 l~v~~~~~~~ 124 (413)
|+|.|++.+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999997654
No 54
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=135.66 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEEEec
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWG 326 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~l~gr~l~V~~a 326 (413)
..++.++|||+|||+++|+++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++ ..|.|++|+|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 34556899999999999999999999999 9999999999999999999999999999998874 6899999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
+.+...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876544
No 55
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.8e-19 Score=144.76 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=83.7
Q ss_pred eEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEee
Q 015069 87 YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMW 166 (413)
Q Consensus 87 ~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~ 166 (413)
++|.+|.+...+..|+..++|....|+. .+.+.. ........++|||+|||+++++++|+++|+.||.|.+++++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR---PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCC---SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6889999999999999999987766653 222222 233445567899999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCC
Q 015069 167 DQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATS 215 (413)
Q Consensus 167 d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~ 215 (413)
++.+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+..+...
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9889999999999999999999999999999999999999999765443
No 56
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=134.82 Aligned_cols=93 Identities=28% Similarity=0.443 Sum_probs=82.2
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE 127 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~ 127 (413)
++|||+|||.++++++|+++|++||+|.+|.+..+ .+|||||+|.+.++|.+|++.|++..+.|+.|.|+++.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 48999999999999999999999999999999888 78899999999999999999999999999999999997754321
Q ss_pred C-------CCCCceEEEcCCC
Q 015069 128 D-------TSGHFNVFVGDLS 141 (413)
Q Consensus 128 ~-------~~~~~~l~v~nl~ 141 (413)
. .....+|||+||+
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCCccccCCCceecCCCC
Confidence 1 1225679999986
No 57
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=131.10 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCC--eeCCeeEEEEec
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNAR--ILCGKPIKCSWG 326 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~--~l~gr~l~V~~a 326 (413)
..++.++|||+|||+++++++|+++|++| |.|.+|+++++||||||+|.+.++|.+|++.|++. .|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34566899999999999999999999999 99999999999999999999999999999988765 599999999999
Q ss_pred CCCCC
Q 015069 327 SKPTP 331 (413)
Q Consensus 327 ~~~~~ 331 (413)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87554
No 58
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=132.63 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC--CcccCcceEEEec
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNWA 120 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~--~~i~g~~l~v~~~ 120 (413)
.+.+.++|||+|||++++|+||+++|++||+|.+|+|+++ +|||||+|.+.++|.+|++.+++ ..|.|++|+|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4556789999999999999999999999999999999876 68999999999999999998864 7899999999999
Q ss_pred ccCCCCCC
Q 015069 121 YASSQRED 128 (413)
Q Consensus 121 ~~~~~~~~ 128 (413)
.++.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 87655433
No 59
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=7.7e-18 Score=131.67 Aligned_cols=82 Identities=35% Similarity=0.641 Sum_probs=75.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
...++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 455899999999999999999999999 99999999876 6899999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 015069 325 WGSKPTPPGT 334 (413)
Q Consensus 325 ~a~~~~~~~~ 334 (413)
|+++......
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9987765443
No 60
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=132.10 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCC--cccC
Q 015069 36 GNLPPRFDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFG 112 (413)
Q Consensus 36 ~~~~~~~~~~~~~tv~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~--~i~g 112 (413)
++........++++|||+|||+ +++++||+++|++||.|.+|.|+++ ++||||+|.+.++|..|++.|++. .|.|
T Consensus 4 ~~~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 4 GSSGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 3444455566789999999999 9999999999999999999999865 479999999999999999998864 4999
Q ss_pred cceEEEecccCCC
Q 015069 113 QPIKVNWAYASSQ 125 (413)
Q Consensus 113 ~~l~v~~~~~~~~ 125 (413)
++|+|.|+.....
T Consensus 82 r~l~V~~a~~~~~ 94 (102)
T 1x4d_A 82 KPVRVHLSQKYKR 94 (102)
T ss_dssp EECEEEEECCCTT
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 61
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=132.60 Aligned_cols=81 Identities=19% Similarity=0.401 Sum_probs=74.9
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCC--eeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eecCeEE
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPT--CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK----WLGNRQI 204 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~l~g~~i 204 (413)
.-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|++||||||+|.+.++|.+|++.++|. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3467999999999999999999999995 679999999999999999999999999999999999986 4899999
Q ss_pred EEEEccC
Q 015069 205 RCNWAAK 211 (413)
Q Consensus 205 ~v~~~~~ 211 (413)
.|+|+..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999853
No 62
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=129.82 Aligned_cols=85 Identities=14% Similarity=0.238 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHh--CCCcccCcceEEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL--NGRHIFGQPIKVN 118 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l--~~~~i~g~~l~v~ 118 (413)
+....++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+.|++|+|.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 445567899999999999999999999999999999988765 689999999999999999976 4678999999999
Q ss_pred ecccCCCCC
Q 015069 119 WAYASSQRE 127 (413)
Q Consensus 119 ~~~~~~~~~ 127 (413)
|+..+....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 998766544
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.9e-18 Score=131.11 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456889999999999999999999999 99999999876 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 015069 325 WGSKPTPPG 333 (413)
Q Consensus 325 ~a~~~~~~~ 333 (413)
|++......
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2do0_A 90 MDERALPKG 98 (114)
T ss_dssp ECSCCCCCS
T ss_pred EcccCCCCC
Confidence 998655443
No 64
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=132.70 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=73.3
Q ss_pred CCcccEEEEecCCCC-CCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC--CeeCCeeEEEEec
Q 015069 250 NPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA--RILCGKPIKCSWG 326 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~l~gr~l~V~~a 326 (413)
..+.++|||+|||++ +|+++|+++|++| |.|.+|++.++||||||+|.+.++|.+|++.||+ ..|.||+|+|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 455789999999998 9999999999999 9999999999999999999999999999998864 5699999999999
Q ss_pred CCCCC
Q 015069 327 SKPTP 331 (413)
Q Consensus 327 ~~~~~ 331 (413)
+....
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 86554
No 65
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=130.44 Aligned_cols=89 Identities=38% Similarity=0.762 Sum_probs=79.6
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 40 ~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
......+.++|||+|||.++++++|+++|++||+|..|.++.++ ++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34455678999999999999999999999999999999999865 4689999999999999999999999999999999
Q ss_pred EecccCCCCCC
Q 015069 118 NWAYASSQRED 128 (413)
Q Consensus 118 ~~~~~~~~~~~ 128 (413)
+|+.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99987665433
No 66
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=129.55 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=75.8
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
..++.++|||+|||..+|+++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34556899999999999999999999999 9999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 015069 329 PTP 331 (413)
Q Consensus 329 ~~~ 331 (413)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 553
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=128.48 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeC--CeeEEEEecC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILC--GKPIKCSWGS 327 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~--gr~l~V~~a~ 327 (413)
.++.++|||+|||..+|+++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|. |++|+|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3455889999999999999999999999 99999999999999999999999999999999999999 9999999998
Q ss_pred CCCC
Q 015069 328 KPTP 331 (413)
Q Consensus 328 ~~~~ 331 (413)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 68
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=8.2e-18 Score=131.53 Aligned_cols=91 Identities=55% Similarity=0.939 Sum_probs=84.2
Q ss_pred CCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 125 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 125 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
...+....++|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|+|..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEccCCCCC
Q 015069 205 RCNWAAKGATS 215 (413)
Q Consensus 205 ~v~~~~~~~~~ 215 (413)
.|.|+..+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999776554
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4.1e-18 Score=124.96 Aligned_cols=80 Identities=53% Similarity=0.908 Sum_probs=77.3
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
.+|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|++.++|..++|+.|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999765
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=127.32 Aligned_cols=83 Identities=57% Similarity=0.977 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
.+.++|||+|||.++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.++|..++|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 015069 210 AKG 212 (413)
Q Consensus 210 ~~~ 212 (413)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 71
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=129.37 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCC--cccCcceEEEec
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGR--HIFGQPIKVNWA 120 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~--~i~g~~l~v~~~ 120 (413)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .|.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4456789999999999999999999999999999998764 689999999999999999988764 599999999999
Q ss_pred ccCCCCC
Q 015069 121 YASSQRE 127 (413)
Q Consensus 121 ~~~~~~~ 127 (413)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8765443
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=128.83 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=79.7
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC--CceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK--SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~--~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
.......+.++|||+|||.++++++|+++|+.||+|..|+|+.++. ++||||+|.+.++|.+|++.|++..|.|+.|.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445566789999999999999999999999999999999998753 78999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q 015069 117 VNWAYASSQRE 127 (413)
Q Consensus 117 v~~~~~~~~~~ 127 (413)
|+++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998765443
No 73
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=130.37 Aligned_cols=76 Identities=18% Similarity=0.381 Sum_probs=69.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCC----eeCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----ILCG 318 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G--~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~----~l~g 318 (413)
....+|||+|||+.+|+++|+++|++| | .|.+|++++| ||||||+|.+.++|.+|++.|||. .|+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~--G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPY--ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTT--CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhh--CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 445889999999999999999999999 7 4778999876 799999999999999999999997 5899
Q ss_pred eeEEEEecCC
Q 015069 319 KPIKCSWGSK 328 (413)
Q Consensus 319 r~l~V~~a~~ 328 (413)
|+|+|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 74
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-18 Score=129.15 Aligned_cols=89 Identities=27% Similarity=0.446 Sum_probs=82.9
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.|+.++..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999976643
No 75
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=125.70 Aligned_cols=76 Identities=30% Similarity=0.618 Sum_probs=72.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeEEEEecC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSWGS 327 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l-~g~~l~gr~l~V~~a~ 327 (413)
....++|||+|||..+++++|+++|+.| |.|.++++.+++|+|||+|.+.++|.+|++.| ||..+.|++|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3455889999999999999999999999 99999999999999999999999999999988 9999999999999985
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=127.86 Aligned_cols=82 Identities=32% Similarity=0.581 Sum_probs=75.4
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456899999999999999999999999 99999999885 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015069 325 WGSKPTPP 332 (413)
Q Consensus 325 ~a~~~~~~ 332 (413)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876544
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=130.16 Aligned_cols=91 Identities=23% Similarity=0.424 Sum_probs=80.8
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec--CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK--DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~--~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
.......+.++|||+|||.++++++|+++|++||+|..|.++.+ +.++||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34445567899999999999999999999999999999999987 4578999999999999999999999999999999
Q ss_pred EEecccCCCCCCC
Q 015069 117 VNWAYASSQREDT 129 (413)
Q Consensus 117 v~~~~~~~~~~~~ 129 (413)
|+|+.++..+...
T Consensus 87 V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 87 VALAQRKEERQSG 99 (103)
T ss_dssp EEECSSCCCCCCC
T ss_pred EEEecccccCCCC
Confidence 9999877654443
No 78
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-18 Score=130.62 Aligned_cols=80 Identities=38% Similarity=0.671 Sum_probs=75.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
...++|||+|||..+++++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.|+++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 345889999999999999999999999 999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 015069 331 PP 332 (413)
Q Consensus 331 ~~ 332 (413)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=130.04 Aligned_cols=89 Identities=30% Similarity=0.555 Sum_probs=79.6
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
.+.....+.++|||+|||.++++++|+++|++||+|..|.++.++ .+|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344555678999999999999999999999999999999999875 3689999999999999999999999999999
Q ss_pred eEEEecccCCCCC
Q 015069 115 IKVNWAYASSQRE 127 (413)
Q Consensus 115 l~v~~~~~~~~~~ 127 (413)
|+|+++.++....
T Consensus 87 l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 87 IRVNKASAHNKNL 99 (105)
T ss_dssp CEEEETTTTSCCC
T ss_pred EEEEECCCCCcCC
Confidence 9999998776543
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.8e-18 Score=143.15 Aligned_cols=125 Identities=17% Similarity=0.304 Sum_probs=80.2
Q ss_pred EEEcCHHHHHHHHHHhCCCccc--CcceEEEecccC-----------------CCCCCCCCCceEEEcCCCcccChHHHH
Q 015069 90 VDYFDRRSAALAIVTLNGRHIF--GQPIKVNWAYAS-----------------SQREDTSGHFNVFVGDLSPEVTDATLF 150 (413)
Q Consensus 90 V~F~~~~~A~~A~~~l~~~~i~--g~~l~v~~~~~~-----------------~~~~~~~~~~~l~v~nl~~~~~~~~l~ 150 (413)
.+|.+.++|..++..+++.... |+.+...+.... ..+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987665 666666553211 011223446789999999999999999
Q ss_pred hhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCC
Q 015069 151 ACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGAT 214 (413)
Q Consensus 151 ~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~ 214 (413)
++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|++.|+|..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999976543
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=127.22 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=73.1
Q ss_pred cccEEEEecCCCCCCHHHHH----HHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 252 QYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~----~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
..++|||+|||+.+++++|+ ++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34789999999999999999 999999 99999999977 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|+++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976543
No 82
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=131.41 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=71.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
++.++|||+|||+++++++|+++|++| |.|.+|++++| +|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345889999999999999999999999 99999999865 6899999999999999999999999999999999
Q ss_pred ecCCC
Q 015069 325 WGSKP 329 (413)
Q Consensus 325 ~a~~~ 329 (413)
+++..
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 83
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=130.28 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=69.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCcc-ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeEEEEe
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMG-NARILCGKPIKCSW 325 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G-~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l-~g~~l~gr~l~V~~ 325 (413)
++|||+|||+++|+++|+++|+.| | .|.+|+++++ ||||||+|.+.++|.+|++.+ |+..|+||+|+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 689999999999999999999999 8 8999999865 799999999999999999987 45689999999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987543
No 84
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=131.14 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhC--CCcccCcceEEEe
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN--GRHIFGQPIKVNW 119 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~--~~~i~g~~l~v~~ 119 (413)
....++++|||+|||++++|++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.++ +..|.|++|+|.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34456889999999999999999999999999999999876 6799999999999999999887 4689999999999
Q ss_pred cccCCCCCCC
Q 015069 120 AYASSQREDT 129 (413)
Q Consensus 120 ~~~~~~~~~~ 129 (413)
+.++......
T Consensus 104 a~~k~~~~~~ 113 (119)
T 2ad9_A 104 SNHKELKTDS 113 (119)
T ss_dssp CSSSSCCCCC
T ss_pred ccCCCCCccc
Confidence 9877654433
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.2e-18 Score=140.03 Aligned_cols=119 Identities=23% Similarity=0.365 Sum_probs=74.8
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccE
Q 015069 176 FGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTT 255 (413)
Q Consensus 176 ~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (413)
+.|++|.+...+..|++.++|....|+.- +.+ ...+......++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-----------------------------------~~~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-----------------------------------GRPPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CCS-----------------------------------CCSCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCc-----------------------------------CCCCCCCCCCCE
Confidence 57788888888899998887766555421 000 011122233478
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
|||+|||..+|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+++.
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999 99999999865 689999999999999999999999999999999999876
Q ss_pred CCC
Q 015069 330 TPP 332 (413)
Q Consensus 330 ~~~ 332 (413)
.++
T Consensus 128 ~~~ 130 (135)
T 2lea_A 128 RPP 130 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 86
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-17 Score=126.88 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=75.5
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
......++|||+|||..+|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334456899999999999999999999999 99999999977 799999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015069 324 SWGSKPTP 331 (413)
Q Consensus 324 ~~a~~~~~ 331 (413)
.|++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987654
No 87
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-18 Score=128.10 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=81.0
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.++|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015069 209 AAKGAT 214 (413)
Q Consensus 209 ~~~~~~ 214 (413)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 977654
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=127.17 Aligned_cols=86 Identities=34% Similarity=0.456 Sum_probs=80.6
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
+....+.++|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|+|..++|++|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccC
Q 015069 206 CNWAAK 211 (413)
Q Consensus 206 v~~~~~ 211 (413)
|.|+..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999753
No 89
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=124.48 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=72.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.+.++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 455899999999999999999999999 999999998 7899999999999999999999999999999999998765
Q ss_pred CC
Q 015069 331 PP 332 (413)
Q Consensus 331 ~~ 332 (413)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-17 Score=127.56 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=74.4
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
.....++|||+|||.++|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 33456899999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 91
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=127.05 Aligned_cols=86 Identities=19% Similarity=0.377 Sum_probs=80.0
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
....+.++|||+|||.++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|++..++|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567889999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 015069 207 NWAAKGA 213 (413)
Q Consensus 207 ~~~~~~~ 213 (413)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997654
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.3e-17 Score=128.11 Aligned_cols=86 Identities=19% Similarity=0.373 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccC---cce
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFG---QPI 115 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g---~~l 115 (413)
....+.++|||+|||.++++++|+++|+.||+|..|.|+.++. +|||||+|.+.++|.+|++.||+..+.| +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3445689999999999999999999999999999999998754 6899999999999999999999999998 999
Q ss_pred EEEecccCCCCC
Q 015069 116 KVNWAYASSQRE 127 (413)
Q Consensus 116 ~v~~~~~~~~~~ 127 (413)
.|+|+.++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998766543
No 93
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=126.85 Aligned_cols=85 Identities=33% Similarity=0.555 Sum_probs=80.3
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
.+.++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 015069 210 AKGAT 214 (413)
Q Consensus 210 ~~~~~ 214 (413)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76644
No 94
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=125.76 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=73.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45889999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 015069 326 GSKPTPP 332 (413)
Q Consensus 326 a~~~~~~ 332 (413)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876654
No 95
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=129.36 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=78.5
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 40 ~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
......+.++|||+|||.++++++|+++|++||+|..|.+..++. ++||||+|.+.++|.+|++.||+..|.|+.|+|+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 334456678999999999999999999999999999999977654 8899999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 015069 119 WAYASSQRE 127 (413)
Q Consensus 119 ~~~~~~~~~ 127 (413)
|+.+.....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4a_A 95 FPRSGRGTG 103 (109)
T ss_dssp CCCCCCCCC
T ss_pred EcccCCCCC
Confidence 998765443
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.5e-17 Score=130.01 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=74.9
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
...+..++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556899999999999999999999999 99999999876 4899999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 015069 322 KCSWGSKPTP 331 (413)
Q Consensus 322 ~V~~a~~~~~ 331 (413)
+|.|++++..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 97
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=127.73 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
....+.++|||+|||.++++++|+++|++||+|..|.++.++ .+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345568899999999999999999999999999999999864 4789999999999999999999999999999999
Q ss_pred EecccCCCCCC
Q 015069 118 NWAYASSQRED 128 (413)
Q Consensus 118 ~~~~~~~~~~~ 128 (413)
+++.++.....
T Consensus 87 ~~a~~~~~~~~ 97 (102)
T 1x5s_A 87 DQAGKSSDNRS 97 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EECCCCCCCCC
Confidence 99987665433
No 98
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=126.29 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=74.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||..+|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999876 5999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015069 325 WGSKPTPP 332 (413)
Q Consensus 325 ~a~~~~~~ 332 (413)
|++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876553
No 99
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=6.1e-18 Score=127.66 Aligned_cols=82 Identities=29% Similarity=0.622 Sum_probs=78.5
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
+++|||+|||.++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 015069 212 GA 213 (413)
Q Consensus 212 ~~ 213 (413)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 100
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=8e-18 Score=131.54 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=82.2
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445668999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.|+.++..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876543
No 101
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=126.78 Aligned_cols=86 Identities=21% Similarity=0.459 Sum_probs=80.5
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EccCCCC
Q 015069 208 WAAKGAT 214 (413)
Q Consensus 208 ~~~~~~~ 214 (413)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9976644
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=5.8e-18 Score=124.74 Aligned_cols=81 Identities=38% Similarity=0.555 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.++|..++|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 015069 209 A 209 (413)
Q Consensus 209 ~ 209 (413)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 103
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=2.9e-17 Score=125.65 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=72.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.+.++|||+|||.++|+++|+++|+.| |.|.+|++.+ +||||+|.+.++|.+|++.|||..|.|+.|+|.|++++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 445889999999999999999999999 9999999984 599999999999999999999999999999999998766
Q ss_pred CCC
Q 015069 331 PPG 333 (413)
Q Consensus 331 ~~~ 333 (413)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 104
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=127.49 Aligned_cols=86 Identities=34% Similarity=0.694 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
.+.++|||+|||.++++++|+++|+.||.|.++ ++++|+.++.++|||||+|.+.++|.+|++.+++..+.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 015069 209 AAKGATS 215 (413)
Q Consensus 209 ~~~~~~~ 215 (413)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9776543
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=125.76 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=76.2
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 40 ~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
........++|||+|||.++++++|+++|++||.|. +.++.++.+|||||+|.+.++|.+|++.|||..|.|+.|.|++
T Consensus 12 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 12 PGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 334455678999999999999999999999999997 7888888899999999999999999999999999999999999
Q ss_pred cccCC
Q 015069 120 AYASS 124 (413)
Q Consensus 120 ~~~~~ 124 (413)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97654
No 106
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=128.63 Aligned_cols=88 Identities=27% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----CCceEEEEEcCHHHHHHHHHHh-CCCcccCc
Q 015069 40 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTL-NGRHIFGQ 113 (413)
Q Consensus 40 ~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-----~~g~afV~F~~~~~A~~A~~~l-~~~~i~g~ 113 (413)
......+.++|||+|||.++++++|+++|+.||+|..|.++.+. .+|||||+|.+.++|.+|++.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 33455678899999999999999999999999999999998772 3789999999999999999999 99999999
Q ss_pred ceEEEecccCCCCC
Q 015069 114 PIKVNWAYASSQRE 127 (413)
Q Consensus 114 ~l~v~~~~~~~~~~ 127 (413)
.|.|+|+.++....
T Consensus 88 ~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 RLVLEWADSEVTVQ 101 (107)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999998776543
No 107
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=129.81 Aligned_cols=87 Identities=30% Similarity=0.583 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.....+.++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.++|..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 015069 206 CNWAAKG 212 (413)
Q Consensus 206 v~~~~~~ 212 (413)
|.++.++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998665
No 108
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=127.54 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=74.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456899999999999999999999999 99999999866 589999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 015069 324 SWGSKPTPP 332 (413)
Q Consensus 324 ~~a~~~~~~ 332 (413)
.|++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876544
No 109
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.7e-18 Score=128.12 Aligned_cols=88 Identities=35% Similarity=0.478 Sum_probs=81.8
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
...+.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 015069 208 WAAKGATS 215 (413)
Q Consensus 208 ~~~~~~~~ 215 (413)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99766543
No 110
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=126.67 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=76.3
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
+......+.++|||+|||.++++++|+++|++||+|..|.+.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 33344567889999999999999999999999999999999754 6899999999999999999999999999999999
Q ss_pred ecccCCC
Q 015069 119 WAYASSQ 125 (413)
Q Consensus 119 ~~~~~~~ 125 (413)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987654
No 111
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=126.52 Aligned_cols=79 Identities=23% Similarity=0.435 Sum_probs=72.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
+.++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44789999999999999999999999 99999999843 57999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 015069 323 CSWGSKPTPP 332 (413)
Q Consensus 323 V~~a~~~~~~ 332 (413)
|.|+++...+
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=124.04 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|||.++++++|+++|++||+|.+|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|+++.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 34568899999999999999999999999999999997 67999999999999999999999999999999999987
Q ss_pred CCCCC
Q 015069 123 SSQRE 127 (413)
Q Consensus 123 ~~~~~ 127 (413)
+....
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 113
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=128.67 Aligned_cols=89 Identities=28% Similarity=0.406 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.++..+..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999977644
No 114
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=6.4e-18 Score=134.46 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=77.9
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
.......+.++|||+|||.++++++|+++|++||+|..|+++.++ .+|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344456678899999999999999999999999999999999863 4789999999999999999999999999999
Q ss_pred eEEEecccCC
Q 015069 115 IKVNWAYASS 124 (413)
Q Consensus 115 l~v~~~~~~~ 124 (413)
|+|+|+.++.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999997764
No 115
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=129.72 Aligned_cols=85 Identities=22% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
....+++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.++|..++|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 015069 208 WAAKG 212 (413)
Q Consensus 208 ~~~~~ 212 (413)
|+.++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98665
No 116
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=127.07 Aligned_cols=80 Identities=33% Similarity=0.527 Sum_probs=74.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
...++|||+|||..+|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 355889999999999999999999999 99999999965 899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876543
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=125.16 Aligned_cols=78 Identities=18% Similarity=0.436 Sum_probs=72.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ ||+..|.|++|+|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 455899999999999999999999999 99999999875 7999999999999999998 89999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987654
No 118
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.2e-17 Score=123.05 Aligned_cols=75 Identities=33% Similarity=0.561 Sum_probs=70.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345899999999999999999999999 99999999765 7999999999999999999999999999999999
Q ss_pred ecC
Q 015069 325 WGS 327 (413)
Q Consensus 325 ~a~ 327 (413)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=127.48 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=74.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455889999999999999999999999 99999999765 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015069 325 WGSKPTPP 332 (413)
Q Consensus 325 ~a~~~~~~ 332 (413)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 120
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=135.87 Aligned_cols=85 Identities=32% Similarity=0.505 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
....+.++|||+|||.++++++|+++|+.||+|.+|+++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456678999999999999999999999999999999998864 789999999999999999999999999999999
Q ss_pred EecccCCCC
Q 015069 118 NWAYASSQR 126 (413)
Q Consensus 118 ~~~~~~~~~ 126 (413)
+++.++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 121
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=124.99 Aligned_cols=77 Identities=32% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
..++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|.|++|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456889999999999999999999999 99999999875 68999999999999999999999999999999
Q ss_pred EEecC
Q 015069 323 CSWGS 327 (413)
Q Consensus 323 V~~a~ 327 (413)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 122
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=126.62 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=79.3
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeee--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 197 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (413)
.......++|||+|||.++++++|+++|+.||.|.+ ++++.|+.+|+++|||||+|.+.++|.+|++.++|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566789999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eecCeEEEEEEc
Q 015069 198 WLGNRQIRCNWA 209 (413)
Q Consensus 198 ~l~g~~i~v~~~ 209 (413)
.++|+.|+|+++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999987
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-17 Score=125.79 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=73.6
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC-----eeEEEEe
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-----KPIKCSW 325 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g-----r~l~V~~ 325 (413)
...++|||+|||+++|+++|+++|+.| |.|.+|++..+ |||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 345899999999999999999999999 99999999998 999999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
++++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987654
No 124
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=130.15 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
.....+.++|||+|||.++++++|+++|++||+|..|.+..++ .+|||||+|.+.++|.+|++.|+|..|.|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445668899999999999999999999999999999999875 37899999999999999999999999999999999
Q ss_pred ecccC
Q 015069 119 WAYAS 123 (413)
Q Consensus 119 ~~~~~ 123 (413)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 125
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=129.24 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhC------C
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLN------G 107 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~------~ 107 (413)
.+......+.++|||+|||.++++++|+++|+.||+|..|.|+.++ .+|||||+|.+.++|.+|++.++ +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3444556678999999999999999999999999999999999874 47899999999999999999999 9
Q ss_pred CcccCcceEEEecccCCCCC
Q 015069 108 RHIFGQPIKVNWAYASSQRE 127 (413)
Q Consensus 108 ~~i~g~~l~v~~~~~~~~~~ 127 (413)
..|.|+.|.|+|+.++....
T Consensus 86 ~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp EESSSCEEEEECCCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccCC
Confidence 99999999999998765443
No 126
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=125.10 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 015069 207 NWA 209 (413)
Q Consensus 207 ~~~ 209 (413)
.|+
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 127
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=126.93 Aligned_cols=85 Identities=25% Similarity=0.477 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-------CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-------SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-------~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.+.++|||+|||.++++++|+++|+.||+|..|.+..++. +|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999997643 589999999999999999999999999999999
Q ss_pred EecccCCCCCCC
Q 015069 118 NWAYASSQREDT 129 (413)
Q Consensus 118 ~~~~~~~~~~~~ 129 (413)
+++.++......
T Consensus 83 ~~a~~~~~~~~~ 94 (98)
T 2cpf_A 83 RISERATKPASG 94 (98)
T ss_dssp ECSSCSSCCCCC
T ss_pred EEccCCCCCCCC
Confidence 999877654433
No 128
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-17 Score=127.32 Aligned_cols=82 Identities=27% Similarity=0.505 Sum_probs=74.1
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
......++|||+|||..+|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.||+ .|.|++|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 344556899999999999999999999999 99999999876 68999999999999999999998 8999999
Q ss_pred EEEecCCCCCC
Q 015069 322 KCSWGSKPTPP 332 (413)
Q Consensus 322 ~V~~a~~~~~~ 332 (413)
+|.|++....+
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999765543
No 129
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.5e-18 Score=129.28 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=72.7
Q ss_pred ceEEEcCCCcccChHHHHhhhccCC--CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
.+|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999999999999999999999999999999999999999999999886
Q ss_pred CCC
Q 015069 211 KGA 213 (413)
Q Consensus 211 ~~~ 213 (413)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.1e-18 Score=128.97 Aligned_cols=75 Identities=32% Similarity=0.556 Sum_probs=72.3
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
..++|||+|||.++++++|+++|+.| |.|.++++.+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 35889999999999999999999999 9999999999999999999999999999999999999999999999976
No 131
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=125.56 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
....++|||+|||..+|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455889999999999999999999999 99999999876 5999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987543
No 132
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.3e-17 Score=122.25 Aligned_cols=75 Identities=25% Similarity=0.533 Sum_probs=71.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.+|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 679999999999999999999999 99999999876 7999999999999999999999999999999999998
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 133
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=126.94 Aligned_cols=80 Identities=21% Similarity=0.481 Sum_probs=74.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHh-CCCeeCCeeE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMG-NARILCGKPI 321 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-------kg~afV~f~~~~~A~~A~~~l-~g~~l~gr~l 321 (413)
....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.| |+..|.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3455889999999999999999999999 99999999877 799999999999999999999 9999999999
Q ss_pred EEEecCCCCC
Q 015069 322 KCSWGSKPTP 331 (413)
Q Consensus 322 ~V~~a~~~~~ 331 (413)
+|.|+++...
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 134
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=128.68 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 015069 207 NWAAKGAT 214 (413)
Q Consensus 207 ~~~~~~~~ 214 (413)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976543
No 135
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=128.78 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=82.3
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------Cceec
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN------GKWLG 200 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~------g~~l~ 200 (413)
......++|||+|||+++++++|+++|+.||.|.++++++|+.++.++|||||+|.+.++|.+|++.++ +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEEccCCCCC
Q 015069 201 NRQIRCNWAAKGATS 215 (413)
Q Consensus 201 g~~i~v~~~~~~~~~ 215 (413)
|+.|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999766443
No 136
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=123.87 Aligned_cols=76 Identities=36% Similarity=0.639 Sum_probs=70.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999999999999999999 99999999876 68999999999999999999999999999999999
Q ss_pred cCCC
Q 015069 326 GSKP 329 (413)
Q Consensus 326 a~~~ 329 (413)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 137
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=126.89 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=74.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
....++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455899999999999999999999999 99999999875 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 015069 324 SWGSKPTPP 332 (413)
Q Consensus 324 ~~a~~~~~~ 332 (413)
.|++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=7.6e-18 Score=129.55 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=70.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCcc-ceEEEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVG-TIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G-~i~~v~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
...+|||+|||+++++++|+++|+.| | .|..+++. +++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34789999999999999999999999 9 89999996 3489999999999999999999999999999999999975
Q ss_pred CC
Q 015069 329 PT 330 (413)
Q Consensus 329 ~~ 330 (413)
+.
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.8e-18 Score=130.83 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
....++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|||..|.|+.|+|+|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456899999999999999999999999999999997 5678999999999999999999999999999999999865
No 140
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=4e-18 Score=129.50 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCc------ccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-e
Q 015069 130 SGHFNVFVGDLSP------EVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN-R 202 (413)
Q Consensus 130 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g-~ 202 (413)
..+++|||+|||+ ++++++|+++|+.||.|.++++++|+.||+++|||||+|.+.++|.+|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEccC
Q 015069 203 QIRCNWAAK 211 (413)
Q Consensus 203 ~i~v~~~~~ 211 (413)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999854
No 141
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-17 Score=122.36 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
....++|||+|||.++++++|+++|+.| |.|.+|++.++ ||||+|.+.++|.+|++.|||..|.|+.|+|.|++++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 3455899999999999999999999999 99999999865 9999999999999999999999999999999999876
Q ss_pred CC
Q 015069 330 TP 331 (413)
Q Consensus 330 ~~ 331 (413)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 142
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=126.84 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..+.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456899999999999999999999999 99999999865 689999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015069 324 SWGSKPTP 331 (413)
Q Consensus 324 ~~a~~~~~ 331 (413)
.|++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987554
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=8.4e-18 Score=132.11 Aligned_cols=84 Identities=33% Similarity=0.522 Sum_probs=79.4
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 015069 206 CNWA 209 (413)
Q Consensus 206 v~~~ 209 (413)
|+|+
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9986
No 144
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=8.4e-18 Score=120.77 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 366799999999999999999999999999999966 6889999999999999999999999999999999976
No 145
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=124.03 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
..++|||+|||.++++++|+++|++||+|.+|.+..++ .+|||||+|.+.++|.+|++.|||..|.|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999998876 5789999999999999999999999999999999998
Q ss_pred ccCC
Q 015069 121 YASS 124 (413)
Q Consensus 121 ~~~~ 124 (413)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 146
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3e-17 Score=126.08 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=74.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCC---eeEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCG---KPIK 322 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~g---r~l~ 322 (413)
+..++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..+.| ++|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 456899999999999999999999999 99999999987 7999999999999999999999999988 9999
Q ss_pred EEecCCCCCC
Q 015069 323 CSWGSKPTPP 332 (413)
Q Consensus 323 V~~a~~~~~~ 332 (413)
|.|+++....
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 147
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.4e-17 Score=124.65 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=74.0
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.+.++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 445899999999999999999999999 99999999874 799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
++...+
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 148
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=124.26 Aligned_cols=79 Identities=32% Similarity=0.344 Sum_probs=72.7
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
...++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||..|.|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 334556899999999999999999999999 99999999865 6899999999999999999999999999999
Q ss_pred EEEecCC
Q 015069 322 KCSWGSK 328 (413)
Q Consensus 322 ~V~~a~~ 328 (413)
+|.|+++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999875
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.9e-17 Score=124.86 Aligned_cols=76 Identities=21% Similarity=0.421 Sum_probs=72.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4789999999999999999999999 99999999866 799999999999999999999999999999999999
Q ss_pred CCCC
Q 015069 327 SKPT 330 (413)
Q Consensus 327 ~~~~ 330 (413)
+++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8765
No 150
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=121.67 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=71.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.+.++|||+|||.++|+++|+++|+.| |.|.+|++.++ ||||+|.+.++|.+|++.|||..|.|++|+|.|+++..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD--YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS--CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 345889999999999999999999999 99999999865 99999999999999999999999999999999998764
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=127.69 Aligned_cols=83 Identities=24% Similarity=0.503 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
....+.++|||+|||.++++++|+++|+.||+|.+|.+..++. +|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3445678999999999999999999999999999999998754 689999999999999999999999999999999
Q ss_pred EecccCC
Q 015069 118 NWAYASS 124 (413)
Q Consensus 118 ~~~~~~~ 124 (413)
+|+.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9997654
No 152
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-17 Score=122.39 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=72.8
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
...+.++|||+|||..+|+++|+++|+.|+.|.|.+|++. +|||||+|.+.++|.+|++.|||..|.|++|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3445689999999999999999999999966689888775 67999999999999999999999999999999999987
Q ss_pred CCC
Q 015069 329 PTP 331 (413)
Q Consensus 329 ~~~ 331 (413)
...
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=126.71 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=72.4
Q ss_pred CcccEEEE--ecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee-----CCeeEEE
Q 015069 251 PQYTTVYV--GNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL-----CGKPIKC 323 (413)
Q Consensus 251 ~~~~~l~V--~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l-----~gr~l~V 323 (413)
.+.++||| +||+.++|+++|+++|++| |.|.+|.+..+||||||+|.+.++|.+|++.|||.+| .|++|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34588999 6699999999999999999 9999999999999999999999999999999999998 7899999
Q ss_pred EecCCCC
Q 015069 324 SWGSKPT 330 (413)
Q Consensus 324 ~~a~~~~ 330 (413)
.|++...
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9997644
No 154
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=124.95 Aligned_cols=79 Identities=29% Similarity=0.585 Sum_probs=73.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEE-Eeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDV-RVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v-~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
+.++|||+|||..+++++|+++|+.| |.|.++ ++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45889999999999999999999999 999999 99876 7999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 015069 325 WGSKPTPP 332 (413)
Q Consensus 325 ~a~~~~~~ 332 (413)
|++++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 155
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=125.08 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEecCC-CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKKDK-SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~~~-~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..+.++|||+|||+++++++|+ ++|++||+|.+|+++.++. ++||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999 9999999999999997653 7899999999999999999999999999999999
Q ss_pred ecccCCC
Q 015069 119 WAYASSQ 125 (413)
Q Consensus 119 ~~~~~~~ 125 (413)
++.+...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976653
No 156
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.6e-17 Score=130.48 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
....+.++|||+|||.++++++|+++|++||+|.+|+++.++ .+|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345677999999999999999999999999999999998764 3789999999999999999999999999999999
Q ss_pred Eecc
Q 015069 118 NWAY 121 (413)
Q Consensus 118 ~~~~ 121 (413)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 157
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=128.81 Aligned_cols=85 Identities=33% Similarity=0.512 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556789999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015069 209 AAKGAT 214 (413)
Q Consensus 209 ~~~~~~ 214 (413)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976543
No 158
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=124.08 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCccc--CcceEEEec
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF--GQPIKVNWA 120 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~--g~~l~v~~~ 120 (413)
...+.++|||+|||.++++++|+++|++||+|.+|.+..+ ++||||+|.+.++|.+|++.||+..|. |+.|.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3455789999999999999999999999999999998765 679999999999999999999999999 999999999
Q ss_pred ccCC
Q 015069 121 YASS 124 (413)
Q Consensus 121 ~~~~ 124 (413)
.++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 159
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=127.80 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=74.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
..++|||+|||.++|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34789999999999999999999999 99999999986 599999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 015069 327 SKPTPPG 333 (413)
Q Consensus 327 ~~~~~~~ 333 (413)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8766543
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=128.96 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.++|||+|||+++++++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.|++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4789999999999999999999999 999999999999999999999999999999999999999999999997643
No 161
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=5.4e-18 Score=132.54 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
...+++|||+|||+++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|.+|++.++|..++|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455679999999999999999999999999999999865 56699999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHhhcc
Q 015069 209 AAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHAL 277 (413)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~ 277 (413)
+.+.... .+++...++++|.++|+.|
T Consensus 82 a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 82 YNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp CCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHH
T ss_pred ecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHh
Confidence 8543211 3677788999999999999
No 162
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=4.5e-17 Score=124.55 Aligned_cols=87 Identities=23% Similarity=0.442 Sum_probs=80.0
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.....+.++|||+|||+++++++|+++|+.|| |.++++++++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455678999999999999999999999997 999999999999999999999999999999999 7999999999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.++..+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999976543
No 163
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=126.19 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC-----cceEEEe
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-----QPIKVNW 119 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g-----~~l~v~~ 119 (413)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|.+|++.||+..|.| +.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 45789999999999999999999999999999999877 899999999999999999999999999 9999999
Q ss_pred cccCCCC
Q 015069 120 AYASSQR 126 (413)
Q Consensus 120 ~~~~~~~ 126 (413)
+.++...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9876543
No 164
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=124.52 Aligned_cols=78 Identities=33% Similarity=0.469 Sum_probs=72.7
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
.....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 34456899999999999999999999999 99999999876 789999999999999999999999999999999
Q ss_pred EecCC
Q 015069 324 SWGSK 328 (413)
Q Consensus 324 ~~a~~ 328 (413)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 165
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=126.10 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCcc-CCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC--CcccCcceEEEe
Q 015069 43 DASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG--RHIFGQPIKVNW 119 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~--~~i~g~~l~v~~ 119 (413)
...++++|||+|||++ ++++||+++|++||+|.+|.|++ .+|||||+|.+.++|.+|++.|++ ..|.|++|+|.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4567899999999998 99999999999999999999975 568999999999999999998864 569999999999
Q ss_pred cccCCC
Q 015069 120 AYASSQ 125 (413)
Q Consensus 120 ~~~~~~ 125 (413)
+..+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976654
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=126.05 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC-----CceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 015069 39 PPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK-----SSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (413)
Q Consensus 39 ~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-----~g~afV~F~~~~~A~~A~~~l~~~~i~g~ 113 (413)
.+.....+.++|||+|||.++++++|+++|+.|| |.+|.|+.++. +|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3344456679999999999999999999999999 99999998743 789999999999999999 8999999999
Q ss_pred ceEEEecccCCCCC
Q 015069 114 PIKVNWAYASSQRE 127 (413)
Q Consensus 114 ~l~v~~~~~~~~~~ 127 (413)
.|.|+++.++....
T Consensus 85 ~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 85 RIRVDVADQAQDKD 98 (104)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999998766543
No 167
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.8e-17 Score=122.99 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC--CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD--KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
..+.++|||+|||.++++++|+++|++||+|..|.+.++. .+|||||+|.+.++|.+|++.|++..|.|+.|+|+++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4567899999999999999999999999999999999753 46899999999999999999999999999999999998
Q ss_pred cCCC
Q 015069 122 ASSQ 125 (413)
Q Consensus 122 ~~~~ 125 (413)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 168
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.8e-17 Score=121.63 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999997 5888999999999
Q ss_pred EEc
Q 015069 207 NWA 209 (413)
Q Consensus 207 ~~~ 209 (413)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 169
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=2.1e-17 Score=128.11 Aligned_cols=86 Identities=20% Similarity=0.395 Sum_probs=80.6
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC
Q 015069 208 WAAKGA 213 (413)
Q Consensus 208 ~~~~~~ 213 (413)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987653
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=125.79 Aligned_cols=85 Identities=21% Similarity=0.429 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCee-eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE----
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCS-DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ---- 203 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~---- 203 (413)
....++|||+|||+++++++|+++|+.||.|. ++++++|+.+++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 015069 204 IRCNWAAKGA 213 (413)
Q Consensus 204 i~v~~~~~~~ 213 (413)
|+|.|+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999986553
No 171
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.6e-17 Score=127.79 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=82.1
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---cCe
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL---GNR 202 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l---~g~ 202 (413)
.......++|||+|||.++++++|+++|+.||.|.+++++.|+.+++++|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred EEEEEEccCCCC
Q 015069 203 QIRCNWAAKGAT 214 (413)
Q Consensus 203 ~i~v~~~~~~~~ 214 (413)
+|.|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999976543
No 172
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=9.2e-18 Score=129.06 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
..++|||+|||+++++++|+++|++|| +|..|.+..++++|||||+|.+.++|.+|++.|||..|.|+.|+|+++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 467999999999999999999999999 899999876678999999999999999999999999999999999998644
No 173
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.3e-17 Score=132.59 Aligned_cols=88 Identities=33% Similarity=0.469 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.....+.++|||+|||+++++++|+++|+.||.|.++++++|+.+++++|||||+|.+.++|.+|++.|+|..|+|++|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC
Q 015069 206 CNWAAKGA 213 (413)
Q Consensus 206 v~~~~~~~ 213 (413)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99986653
No 174
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=123.91 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcce--------EEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG--------CKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHI 110 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~--------v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i 110 (413)
...+.++|||+|||.++++++|+++|++||.|.. |+++.++. +|||||+|.+.++|.+|++.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445789999999999999999999999999999 99998753 68999999999999999999999999
Q ss_pred cCcceEEEecc
Q 015069 111 FGQPIKVNWAY 121 (413)
Q Consensus 111 ~g~~l~v~~~~ 121 (413)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 175
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=126.17 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=74.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhc-cCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCe-eCCeeEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHA-LCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARI-LCGKPIKC 323 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~-~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-l~gr~l~V 323 (413)
.+.++|||+|||.++|+++|+++|+. | |.|.+|+++++ +|||||+|.+.++|.+|++.|||.. |.|++|+|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 34578999999999999999999999 9 99999999876 7999999999999999999999999 99999999
Q ss_pred EecCCCCCCC
Q 015069 324 SWGSKPTPPG 333 (413)
Q Consensus 324 ~~a~~~~~~~ 333 (413)
.|++++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998765543
No 176
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=127.56 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=81.7
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCee--------eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--------DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW 198 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 198 (413)
......++|||+|||+++++++|+++|+.||.|. .++++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456678999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEccCCCC
Q 015069 199 LGNRQIRCNWAAKGAT 214 (413)
Q Consensus 199 l~g~~i~v~~~~~~~~ 214 (413)
|.|+.|.|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999877644
No 177
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=127.35 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcc--------eEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCC
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--------GCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGR 108 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~ 108 (413)
.....+.++|||+|||.++++++|+++|++||.|. .|+|+.++ .+|||||+|.+.++|.+|++.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999999998 69998874 3789999999999999999999999
Q ss_pred cccCcceEEEecccCCCCC
Q 015069 109 HIFGQPIKVNWAYASSQRE 127 (413)
Q Consensus 109 ~i~g~~l~v~~~~~~~~~~ 127 (413)
.|.|+.|+|+++.++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999998766543
No 178
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=121.23 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=70.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec-------cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-------DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~-------~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
.++|||+|||.++|+++|+++|+.| |.|.++++.. .+|+|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4789999999999999999999999 9999999965 478999999999999999999999999999999999
Q ss_pred cCCCC
Q 015069 326 GSKPT 330 (413)
Q Consensus 326 a~~~~ 330 (413)
++++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 179
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.2e-18 Score=136.73 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..++|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|+ .++|..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3578999999999999999999999999999999999999999999999999999999999 699999999999999986
Q ss_pred CC
Q 015069 211 KG 212 (413)
Q Consensus 211 ~~ 212 (413)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 180
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=125.11 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.++|..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCC
Q 015069 208 WAAKG 212 (413)
Q Consensus 208 ~~~~~ 212 (413)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 181
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.3e-17 Score=127.02 Aligned_cols=79 Identities=24% Similarity=0.484 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|||.++++++|+++|++||+|..|.+. +|||||+|.+.++|.+|++.|+|..|.|+.|.|+|+.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 44667899999999999999999999999999999997 78999999999999999999999999999999999976
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 182
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=127.68 Aligned_cols=89 Identities=34% Similarity=0.515 Sum_probs=81.3
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEEccCCCCC
Q 015069 206 CNWAAKGATS 215 (413)
Q Consensus 206 v~~~~~~~~~ 215 (413)
|.++......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765433
No 183
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=124.32 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=69.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccc-eEEEEeeccccEEEEEeCCHHHHHHHHHHhCC-CeeCCeeEEEEecCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA-RILCGKPIKCSWGSK 328 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~-i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g-~~l~gr~l~V~~a~~ 328 (413)
.+.++|||+|||.++|+++|+++|+.| |. |..+.+ .++|||||+|.+.++|.+|++.||| ..|+|++|+|.|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345789999999999999999999999 88 555554 6789999999999999999999999 999999999999987
Q ss_pred CCC
Q 015069 329 PTP 331 (413)
Q Consensus 329 ~~~ 331 (413)
+..
T Consensus 83 ~~~ 85 (93)
T 2cqh_A 83 KKL 85 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 184
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=124.81 Aligned_cols=88 Identities=28% Similarity=0.494 Sum_probs=80.3
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
.....+.++|||+|||+++++++|+++|+.|| |.++++++++.+ ++++|||||+|.+.++|.+|+ .+++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 33445678999999999999999999999999 999999999887 999999999999999999999 899999999999
Q ss_pred EEEEccCCCCC
Q 015069 205 RCNWAAKGATS 215 (413)
Q Consensus 205 ~v~~~~~~~~~ 215 (413)
.|.++..+...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999776443
No 185
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=125.60 Aligned_cols=81 Identities=30% Similarity=0.481 Sum_probs=74.2
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
...++.++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556899999999999999999999999 99999999865 6899999999999999999999999999999
Q ss_pred EEEecCCCC
Q 015069 322 KCSWGSKPT 330 (413)
Q Consensus 322 ~V~~a~~~~ 330 (413)
+|.|++++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998653
No 186
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3.8e-18 Score=127.05 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=65.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G--~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
.+|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~--G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT--TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh--CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 469999999999999999999999 9 9999999875 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
++++.+
T Consensus 80 ~~~~~~ 85 (90)
T 3p5t_L 80 SNKLEH 85 (90)
T ss_dssp C-----
T ss_pred CCCCcc
Confidence 976543
No 187
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=132.53 Aligned_cols=89 Identities=28% Similarity=0.456 Sum_probs=82.3
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.++|..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 015069 207 NWAAKGATS 215 (413)
Q Consensus 207 ~~~~~~~~~ 215 (413)
.++..+...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999776443
No 188
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=127.42 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=74.2
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
......++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344456899999999999999999999999 99999999877 799999999999999999999999999999999
Q ss_pred EecCCC
Q 015069 324 SWGSKP 329 (413)
Q Consensus 324 ~~a~~~ 329 (413)
.|++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999764
No 189
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=5.8e-17 Score=124.69 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=74.0
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCee---CCe
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL---CGK 319 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l---~gr 319 (413)
.....++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 33456899999999999999999999999 99999999875 68999999999999999999999987 899
Q ss_pred eEEEEecCCCCC
Q 015069 320 PIKCSWGSKPTP 331 (413)
Q Consensus 320 ~l~V~~a~~~~~ 331 (413)
+|+|.|+++...
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 190
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-16 Score=120.34 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=72.5
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
..+.++|||+|| ++|+++|+++|+.| |.|.+|++.+.+|||||+|.+.++|.+|++.|||..|.|++|+|.|++++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 345589999996 89999999999999 99999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 015069 330 TP 331 (413)
Q Consensus 330 ~~ 331 (413)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 191
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=124.47 Aligned_cols=86 Identities=28% Similarity=0.360 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||+++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999996 69999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 015069 208 WAAKGAT 214 (413)
Q Consensus 208 ~~~~~~~ 214 (413)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9865443
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=120.57 Aligned_cols=77 Identities=21% Similarity=0.444 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHh-CCCcccCcceEEEecc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTL-NGRHIFGQPIKVNWAY 121 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l-~~~~i~g~~l~v~~~~ 121 (413)
...+.++|||+|||.++++++|+++|++||+|..|.+.++ +|||||+|.+.++|.+|++.| ++..+.|++|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999999999999999999999999999874 579999999999999999988 9999999999999873
No 193
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=123.71 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=77.4
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.++++..++. ++++|||||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3445678999999999999999999999999999999999965 999999999999999999999999999999999999
Q ss_pred EEccC
Q 015069 207 NWAAK 211 (413)
Q Consensus 207 ~~~~~ 211 (413)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98753
No 194
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=121.48 Aligned_cols=81 Identities=26% Similarity=0.439 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|+++.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 45567899999999999999999999999999999996 34999999999999999999999999999999999987
Q ss_pred CCCCC
Q 015069 123 SSQRE 127 (413)
Q Consensus 123 ~~~~~ 127 (413)
+....
T Consensus 82 ~~~~~ 86 (92)
T 2dgt_A 82 RLRTA 86 (92)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 65443
No 195
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=2.8e-17 Score=137.00 Aligned_cols=136 Identities=21% Similarity=0.362 Sum_probs=74.4
Q ss_pred EEeCCHHHHHHHHHHhCCceec--CeEEEEEEccCCCCCCCccccCCCcccccccCCCCccccccCCCCCCCCCCcccEE
Q 015069 179 VSFRNQEDAQSAINDLNGKWLG--NRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTV 256 (413)
Q Consensus 179 V~f~~~~~A~~a~~~l~g~~l~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (413)
.+|.+.++|..++..+++.... |+.....+........ ..... ..........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~----------~~~~~-----~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS----------YERVR-----NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC----------ccccc-----cCCCCCCCCCCCCCCCCCEE
Confidence 6899999999999988876654 5555444321110000 00000 00000011223334556899
Q ss_pred EEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 257 YVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 257 ~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
||+|||..+++++|+++|+.| |.|..|.+..+ +|||||+|.+.++|.+|++.|||..|.|++|+|.|+++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred EEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999999999999999999 99999999876 6999999999999999999999999999999999998755
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 154 ~ 154 (165)
T 1rk8_A 154 P 154 (165)
T ss_dssp -
T ss_pred C
Confidence 4
No 196
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=4.4e-17 Score=126.24 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=73.8
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
....++|||+|||..+|+++|+++|+.| |.|.+|++..+ +|||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456899999999999999999999999 99999999866 699999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015069 324 SWGSKPTP 331 (413)
Q Consensus 324 ~~a~~~~~ 331 (413)
.|+++..+
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99986543
No 197
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.9e-17 Score=121.87 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=71.2
Q ss_pred CCCcccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 249 NNPQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
..++.++|||+|||. ++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|||..++|++|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 445568999999998 99999999999999 999999995 7899999999999999999999999999999999997
Q ss_pred CC
Q 015069 328 KP 329 (413)
Q Consensus 328 ~~ 329 (413)
+.
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 198
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.7e-17 Score=125.88 Aligned_cols=80 Identities=23% Similarity=0.482 Sum_probs=72.6
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
......++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 334556899999999999999999999999 999999998 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 015069 328 KPTP 331 (413)
Q Consensus 328 ~~~~ 331 (413)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7543
No 199
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=124.78 Aligned_cols=77 Identities=26% Similarity=0.524 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPTPP 332 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~~~ 332 (413)
++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999 99999999997 999999999999999999999999999999999999876643
No 200
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1e-16 Score=122.63 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..+.++|||+|||..+++++|+++|+.| | |.+|+++++ +|||||+|.+.++|.+|+ .|||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456899999999999999999999999 8 999999866 689999999999999999 89999999999999
Q ss_pred EecCCCCC
Q 015069 324 SWGSKPTP 331 (413)
Q Consensus 324 ~~a~~~~~ 331 (413)
.|+++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 201
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=126.08 Aligned_cols=83 Identities=30% Similarity=0.527 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
.....++|||+|||.++++++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|++.|+|..|.|+.|+|+|+.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 3456789999999999999999999999999999999876 68999999999999999999999999999999999987
Q ss_pred CCCCC
Q 015069 123 SSQRE 127 (413)
Q Consensus 123 ~~~~~ 127 (413)
+....
T Consensus 99 ~~~~~ 103 (109)
T 1x4g_A 99 SPDMT 103 (109)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 66543
No 202
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.6e-17 Score=122.84 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 42 FDASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
...++.++|||+|||. ++++++|+++|+.||.|.+|.+ .+|||||+|.+.++|.+|++.|+|..+.|+.|+|+++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3445688999999998 9999999999999999999988 3789999999999999999999999999999999998
Q ss_pred ccC
Q 015069 121 YAS 123 (413)
Q Consensus 121 ~~~ 123 (413)
.++
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 203
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=5.3e-17 Score=125.13 Aligned_cols=83 Identities=29% Similarity=0.379 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+.+++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445667899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EEcc
Q 015069 207 NWAA 210 (413)
Q Consensus 207 ~~~~ 210 (413)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 204
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=123.93 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
......++|||+|||.++++++|+++|++||.|..+.++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3455678999999999999999999999999999888887643 689999999999999999999999999999999
Q ss_pred EecccC
Q 015069 118 NWAYAS 123 (413)
Q Consensus 118 ~~~~~~ 123 (413)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998654
No 205
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=135.43 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCC--CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..++|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 015069 209 AAKG 212 (413)
Q Consensus 209 ~~~~ 212 (413)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 206
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=125.84 Aligned_cols=86 Identities=35% Similarity=0.751 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhcc-CCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecCeEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKW-LGNRQIR 205 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-l~g~~i~ 205 (413)
+....++|||+|||+++++++|+++|+. ||.|.++++++|+ +++++|||||+|.+.++|.+|++.+++.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999866543
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=128.91 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEec-CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..++++|||+|||+++++++|+ ++|++||+|.+|.+.+. +.+|||||+|.+.++|..|++.|||..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 69999999999988654 568999999999999999999999999999999999
Q ss_pred ecccCC
Q 015069 119 WAYASS 124 (413)
Q Consensus 119 ~~~~~~ 124 (413)
|+..+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 208
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=126.12 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||+++++++|+++|+.||+|.++++++|+. |.++|||||+|.+.++|..|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345568899999999999999999999999999999999977 9999999999999999999999 89999999999999
Q ss_pred EccC
Q 015069 208 WAAK 211 (413)
Q Consensus 208 ~~~~ 211 (413)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8743
No 209
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=122.54 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceE-EEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC-KLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v-~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
.....++|||+|||+++++++|+++|++||+|..| .++.++..+.|||+|.+.++|.+|++.|||..|.|+.|+|+++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34457899999999999999999999999999999 58888777779999999999999999999999999999999997
Q ss_pred cCC
Q 015069 122 ASS 124 (413)
Q Consensus 122 ~~~ 124 (413)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 210
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=4.4e-17 Score=125.80 Aligned_cols=87 Identities=30% Similarity=0.386 Sum_probs=76.2
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++.+ +..++|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999965 58999999999
Q ss_pred EEccCCCC
Q 015069 207 NWAAKGAT 214 (413)
Q Consensus 207 ~~~~~~~~ 214 (413)
.++..+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976543
No 211
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=130.48 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=73.1
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEE--EEeecc------ccEEEEEeCCHHHHHHHHHHhCCC----e
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--VRVQRD------KGFGFVRYSTHPEAALAIQMGNAR----I 315 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~--v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~----~ 315 (413)
......++|||+|||+.+|+++|+++|+.| |.|.. |+|+++ ||||||+|.+. +|.+|++.|||. .
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 334556899999999999999999999999 99977 998876 69999999999 999999999999 9
Q ss_pred eCCeeEEEEecCCCCC
Q 015069 316 LCGKPIKCSWGSKPTP 331 (413)
Q Consensus 316 l~gr~l~V~~a~~~~~ 331 (413)
|+||+|+|.|+++...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987543
No 212
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=128.33 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCcccEEEEecCCCCCCHHHHH----HHhhccCccceEEEEeec---cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~~~G~i~~v~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
.++.++|||+|||+.+++++|+ ++|+.| |.|.+|.+.+ .||||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456899999999999999876 699999 9999999875 389999999999999999999999999999999
Q ss_pred EEecCCCC
Q 015069 323 CSWGSKPT 330 (413)
Q Consensus 323 V~~a~~~~ 330 (413)
|.|++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998754
No 213
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=122.12 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.....+.++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++ ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 4455667899999999999999999999999999999999999999999999999999999999998 57899999999
Q ss_pred EEEccCCCCC
Q 015069 206 CNWAAKGATS 215 (413)
Q Consensus 206 v~~~~~~~~~ 215 (413)
|.++..+...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999776543
No 214
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5e-17 Score=120.82 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=76.2
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
.++|||+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|.+|+ .++|..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999989999999999999999999999 8999999999999999865
Q ss_pred C
Q 015069 212 G 212 (413)
Q Consensus 212 ~ 212 (413)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 215
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=120.73 Aligned_cols=80 Identities=25% Similarity=0.506 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|||.++++++|+++|++||+|..|.++ ++||||+|.+.++|.+|++.||+..|.|+.|+|+++.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 34567899999999999999999999999999999996 34999999999999999999999999999999999987
Q ss_pred CCCC
Q 015069 123 SSQR 126 (413)
Q Consensus 123 ~~~~ 126 (413)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 216
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.3e-17 Score=125.08 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=71.9
Q ss_pred cccEEEEecCCCCCCHHHHH---HHhhccCccceEEEEeeccc---------cEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 015069 252 QYTTVYVGNLSSEVTSVDLH---RHFHALCVGTIEDVRVQRDK---------GFGFVRYSTHPEAALAIQMGNARILCGK 319 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~---~~F~~~~~G~i~~v~~~~~k---------g~afV~f~~~~~A~~A~~~l~g~~l~gr 319 (413)
..++|||+|||+++++++|+ ++|+.| |.|.+|++.+++ |||||+|.+.++|.+|++.|||..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 34789999999999999999 999999 999999998663 7999999999999999999999999999
Q ss_pred eEEEEecCCCC
Q 015069 320 PIKCSWGSKPT 330 (413)
Q Consensus 320 ~l~V~~a~~~~ 330 (413)
+|+|.|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=125.69 Aligned_cols=87 Identities=28% Similarity=0.384 Sum_probs=80.8
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEccCCCC
Q 015069 207 NWAAKGAT 214 (413)
Q Consensus 207 ~~~~~~~~ 214 (413)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99876644
No 218
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6.7e-17 Score=131.55 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC--cceEEEeccc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYA 122 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~~ 122 (413)
+...+|||+|||+++++++|+++|++||+|.+|+|..++.++||||+|.+.++|.+|++.|||..|.| ++|+|+|+++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 44567999999999999999999999999999999877778899999999999999999999999966 9999999987
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-18 Score=123.65 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
.+.++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|+|..+.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999887654
No 220
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=119.53 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||+++++++|+++|+.| .|.+++++++ .+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34556889999999999999999999999 9999999999 889999999999999999999999 99999999999999
Q ss_pred EccCCC
Q 015069 208 WAAKGA 213 (413)
Q Consensus 208 ~~~~~~ 213 (413)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987654
No 221
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=2.5e-17 Score=124.02 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.+++..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 015069 210 A 210 (413)
Q Consensus 210 ~ 210 (413)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 222
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=130.24 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcce--EEEEecC----CCceEEEEEcCHHHHHHHHHHhCCC----cccC
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG--CKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGR----HIFG 112 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~--v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~----~i~g 112 (413)
.....++|||+|||+++++++|+++|++||.|.. |+|++++ ++|||||+|.+. +|.+|++.|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466789999999999999999999999999966 9999876 478999999999 999999999999 9999
Q ss_pred cceEEEecccCCCCC
Q 015069 113 QPIKVNWAYASSQRE 127 (413)
Q Consensus 113 ~~l~v~~~~~~~~~~ 127 (413)
+.|+|+++.+.....
T Consensus 98 r~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 98 KTINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCCEECCCSCCCC
T ss_pred EEEEEEECCCCCCCC
Confidence 999999998765443
No 223
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=127.52 Aligned_cols=84 Identities=33% Similarity=0.580 Sum_probs=79.2
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 015069 211 KGAT 214 (413)
Q Consensus 211 ~~~~ 214 (413)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6543
No 224
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=120.79 Aligned_cols=82 Identities=28% Similarity=0.485 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhcc--CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSST--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~--G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
.....+.++|||+|||.++++++|+++|++| |.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3344567899999999999999999999999 889888763 6799999999999999999999999999999999
Q ss_pred ecccCCCC
Q 015069 119 WAYASSQR 126 (413)
Q Consensus 119 ~~~~~~~~ 126 (413)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 225
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=9.1e-18 Score=160.95 Aligned_cols=86 Identities=19% Similarity=0.438 Sum_probs=80.6
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
.....+|||+|||+.+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|+|..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 015069 209 AAKGAT 214 (413)
Q Consensus 209 ~~~~~~ 214 (413)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976543
No 226
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=123.20 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=72.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceE-EEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCee---
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIE-DVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKP--- 320 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~-~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~--- 320 (413)
...++|||+|||.++++++|+++|+.| |.|. +|+++++ +|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345899999999999999999999999 9999 9999876 489999999999999999999999999999
Q ss_pred -EEEEecCCCCC
Q 015069 321 -IKCSWGSKPTP 331 (413)
Q Consensus 321 -l~V~~a~~~~~ 331 (413)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987543
No 227
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.5e-16 Score=123.21 Aligned_cols=76 Identities=30% Similarity=0.594 Sum_probs=71.1
Q ss_pred cccEEEEecCCCC-CCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 252 QYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 252 ~~~~l~V~nLp~~-~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
..++|||+|||.. +++++|+++|+.| |.|.+|++ .+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++.+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 4579999999999 9999999999999 99999999 78999999999999999999999999999999999998654
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 228
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=125.65 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=74.6
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQ-KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
......++|||+|||+++++++|+++|+.|| |.++++++++ .+|+++|||||+|.+.++|.+|+ .++|..++|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999999998 68999999999999999999999 7999999999999
Q ss_pred EEEccCC
Q 015069 206 CNWAAKG 212 (413)
Q Consensus 206 v~~~~~~ 212 (413)
|.++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998654
No 229
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.5e-17 Score=121.92 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCc-cCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 43 DASTCRSVYVGNIHP-QVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
...+.++|||+|||. ++++++|+++|++||+|.+|.+. +|||||+|.+.++|.+|++.|++..+.|+.|+|+++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 345688999999998 99999999999999999999984 6899999999999999999999999999999999997
Q ss_pred cCCCC
Q 015069 122 ASSQR 126 (413)
Q Consensus 122 ~~~~~ 126 (413)
++...
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76543
No 230
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=121.96 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=70.0
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee--ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
....++|||+|||..+|+++|+++|+.| |.|. ++++ +.+|||||+|.+.++|.+|++.|||..|.|++|+|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3445899999999999999999999999 8886 5555 448999999999999999999999999999999999998
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 231
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=135.03 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccC--CcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTG--PLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...++|||+|||+++++++|+++|+.|| .|.+|+|+.++. +|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999998753 6899999999999999999999999999999999
Q ss_pred ecccC
Q 015069 119 WAYAS 123 (413)
Q Consensus 119 ~~~~~ 123 (413)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98654
No 232
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.7e-16 Score=125.64 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.....+.++|||+|||.++++++|+++|+.||+|..|.+..++ .+|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3455677899999999999999999999999999999999875 5789999999999999999999999999999999
Q ss_pred EecccCCCC
Q 015069 118 NWAYASSQR 126 (413)
Q Consensus 118 ~~~~~~~~~ 126 (413)
+++.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999776543
No 233
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=9.1e-17 Score=122.82 Aligned_cols=79 Identities=28% Similarity=0.535 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
..+.++|||+|||.++++++|+++|++||+|..|.++ ++||||+|.+.++|.+|++.|++..|.|+.|.|+|+.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4567899999999999999999999999999999886 459999999999999999999999999999999999876
Q ss_pred CCC
Q 015069 124 SQR 126 (413)
Q Consensus 124 ~~~ 126 (413)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 234
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=124.21 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec---CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~---~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.....+.++|||+|||.++++++|+++|++||.| +++.+ +.+|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 3355678999999999999999999999999977 34443 35789999999999999999999999999999999
Q ss_pred EecccCCCCC
Q 015069 118 NWAYASSQRE 127 (413)
Q Consensus 118 ~~~~~~~~~~ 127 (413)
+++.++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2fc9_A 86 ELQGPRGSPN 95 (101)
T ss_dssp EECSSCCCCC
T ss_pred EEcCCCCCCC
Confidence 9998765443
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=8.2e-17 Score=121.70 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=72.6
Q ss_pred CcccEEEEecCCCCCCHHHHH----HHhhccCccceEEEEeec---cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~~~G~i~~v~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
++.++|||+|||.++++++|+ ++|+.| |.|.+|++.+ .+|+|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 455899999999999999999 999999 9999999984 4899999999999999999999999999999999
Q ss_pred EecCCCC
Q 015069 324 SWGSKPT 330 (413)
Q Consensus 324 ~~a~~~~ 330 (413)
.|+++..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 236
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.6e-17 Score=119.18 Aligned_cols=75 Identities=32% Similarity=0.577 Sum_probs=72.0
Q ss_pred eEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 134 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
+|||+|||+++++++|+++|+.||.|.++++..++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 9999999999999875
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=123.05 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=72.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccc-eEEEEee-------ccccEEEEEeCCHHHHHHHHHHhC--CCeeCCeeE
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGT-IEDVRVQ-------RDKGFGFVRYSTHPEAALAIQMGN--ARILCGKPI 321 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~-i~~v~~~-------~~kg~afV~f~~~~~A~~A~~~l~--g~~l~gr~l 321 (413)
+.++|||+|||..+|+++|+++|+.| |. |.+|++. +.+|||||+|.+.++|.+|++.|| +..|.|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45889999999999999999999999 88 9999998 448999999999999999999996 589999999
Q ss_pred EEEecCCCCCC
Q 015069 322 KCSWGSKPTPP 332 (413)
Q Consensus 322 ~V~~a~~~~~~ 332 (413)
+|.|+++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876554
No 238
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=126.35 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC-----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD-----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
......++|||+|||.++++++|+++|+.|| |.+|.++.++ .+|||||+|.+.++|.+|+ .++|..|.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999998875 3789999999999999999 7999999999999
Q ss_pred EEecccCC
Q 015069 117 VNWAYASS 124 (413)
Q Consensus 117 v~~~~~~~ 124 (413)
|+++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99987653
No 239
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.4e-16 Score=126.21 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||.++++++|+++|+.||.|.++++.+++ +|+++|||||+|.+.++|.+|++.++|..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EccCCC
Q 015069 208 WAAKGA 213 (413)
Q Consensus 208 ~~~~~~ 213 (413)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987653
No 240
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=5.6e-17 Score=119.97 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
.....+.++|||+|||.++++++|+++|++||+|..|.++.++. +|||||+|.+.++|.+|++ +++..|.|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 34556788999999999999999999999999999999998754 7899999999999999996 688899999999
Q ss_pred EEec
Q 015069 117 VNWA 120 (413)
Q Consensus 117 v~~~ 120 (413)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=124.20 Aligned_cols=86 Identities=17% Similarity=0.342 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCc----ceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v----~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...+.++|||+|||.++++++|+++|+.||.| ..+.+...+.+|||||+|.+.++|.+|++.|++..|.|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998 56666656678999999999999999999999999999999999
Q ss_pred ecccCCCCCC
Q 015069 119 WAYASSQRED 128 (413)
Q Consensus 119 ~~~~~~~~~~ 128 (413)
|+.++..+..
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpx_A 101 FGKNKKQRSS 110 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EccCCCCCCC
Confidence 9987765443
No 242
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=9.8e-17 Score=123.64 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=71.9
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
...+.++|||+|||..+|+++|+++|+.| |.|.+|++..+ +|+|||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34556899999999999999999999999 99999999865 789999999999999999999999999999999
Q ss_pred EecC
Q 015069 324 SWGS 327 (413)
Q Consensus 324 ~~a~ 327 (413)
.|++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 243
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=8.2e-17 Score=119.61 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=70.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.++|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3789999999999999999999999 99999999866 789999999999999999 89999999999999999
Q ss_pred CCCC
Q 015069 327 SKPT 330 (413)
Q Consensus 327 ~~~~ 330 (413)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7643
No 244
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=124.88 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCC-eeeEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecCeEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPT-CSDARVM-WDQKTGRSRGFGFVSFRNQEDAQSAINDLN--GKWLGNRQI 204 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~-~d~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~l~g~~i 204 (413)
..+.++|||+|||+++++++|+++|+.||. |.++.++ .++.+|+++|||||+|.+.++|.+|++.++ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345678999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEccCCCCC
Q 015069 205 RCNWAAKGATS 215 (413)
Q Consensus 205 ~v~~~~~~~~~ 215 (413)
.|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999776543
No 245
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.9e-17 Score=128.07 Aligned_cols=82 Identities=30% Similarity=0.523 Sum_probs=75.1
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
.....++|||+|||..+|+++|+++|+.| |.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34456899999999999999999999999 99999999876 79999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 015069 323 CSWGSKPTPP 332 (413)
Q Consensus 323 V~~a~~~~~~ 332 (413)
|.|+++...+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876544
No 246
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=120.03 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=69.2
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
...+.++|||+|||..+|+++|+++|+.| |.| +++.+ +|||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKA--TFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSC--SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 33456899999999999999999999999 888 34433 899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 015069 324 SWGSKPTP 331 (413)
Q Consensus 324 ~~a~~~~~ 331 (413)
.|++++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987654
No 247
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=8e-17 Score=128.05 Aligned_cols=89 Identities=21% Similarity=0.427 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 015069 207 NWAAKGATS 215 (413)
Q Consensus 207 ~~~~~~~~~ 215 (413)
.|+..+...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999765443
No 248
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.3e-17 Score=122.39 Aligned_cols=78 Identities=26% Similarity=0.501 Sum_probs=71.4
Q ss_pred CcccEEEEecCCC-CCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 251 PQYTTVYVGNLSS-EVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 251 ~~~~~l~V~nLp~-~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
++.++|||+|||. .+++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 4568999999998 99999999999999 999999995 789999999999999999999999999999999999876
Q ss_pred CCC
Q 015069 330 TPP 332 (413)
Q Consensus 330 ~~~ 332 (413)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=2.6e-16 Score=121.81 Aligned_cols=79 Identities=30% Similarity=0.571 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCcc-CCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 44 ASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
....++|||+|||.+ +++++|+++|++||+|..|.+ .++||||+|.+.++|.+|++.|++..|.|+.|+|+++.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 345689999999999 999999999999999999998 578999999999999999999999999999999999976
Q ss_pred CCCC
Q 015069 123 SSQR 126 (413)
Q Consensus 123 ~~~~ 126 (413)
....
T Consensus 100 ~~~~ 103 (110)
T 1wf1_A 100 PKPD 103 (110)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 5443
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.5e-17 Score=120.86 Aligned_cols=80 Identities=36% Similarity=0.590 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCC-cceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC-CcccCcceEEEecc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG-RHIFGQPIKVNWAY 121 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~-~~i~g~~l~v~~~~ 121 (413)
..+.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|+|+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 345789999999999999999999999999 7766663 467999999999999999999999 99999999999998
Q ss_pred cCCCC
Q 015069 122 ASSQR 126 (413)
Q Consensus 122 ~~~~~ 126 (413)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 251
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=2.1e-16 Score=128.65 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=70.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSK 328 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~~ 328 (413)
..+|||+||++.+|+++|+++|++| |.|++|++..+ +|||||+|.+.++|.+|++.|||..|.| ++|+|.|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4678999999999999999999999 99999999744 6799999999999999999999999965 9999999987
Q ss_pred CC
Q 015069 329 PT 330 (413)
Q Consensus 329 ~~ 330 (413)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 252
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=4e-17 Score=123.94 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCc------cCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccC-
Q 015069 44 ASTCRSVYVGNIHP------QVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFG- 112 (413)
Q Consensus 44 ~~~~~tv~V~nLp~------~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g- 112 (413)
....++|||+|||. ++++++|+++|++||+|.+|+|+.++. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999999998763 7899999999999999999999999999
Q ss_pred cceEEEecccC
Q 015069 113 QPIKVNWAYAS 123 (413)
Q Consensus 113 ~~l~v~~~~~~ 123 (413)
+.|+|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998754
No 253
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=118.49 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=73.0
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
++|||+|||+++++++|+++|+.||.|.++.+..++.+|+++|||||+|.+.++|.+|++.++ ..++|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999999899999999999999999999999888 9999999999886
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=1.6e-16 Score=131.18 Aligned_cols=87 Identities=26% Similarity=0.398 Sum_probs=81.4
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 015069 208 WAAKGAT 214 (413)
Q Consensus 208 ~~~~~~~ 214 (413)
|+.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9976543
No 255
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=6.4e-17 Score=124.86 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQ 113 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~ 113 (413)
.+......+.++|||+|||.++++++|+++|+.||+|.+|.++.++ .+|||||+|.+.++|.+|++.+ +..|.|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 3334455678899999999999999999999999999999999864 3789999999999999999865 6999999
Q ss_pred ceEEEecccCCC
Q 015069 114 PIKVNWAYASSQ 125 (413)
Q Consensus 114 ~l~v~~~~~~~~ 125 (413)
.|.|+++.++..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999976543
No 256
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=123.00 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCcccChHHHH---hhhccCCCeeeEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015069 129 TSGHFNVFVGDLSPEVTDATLF---ACFSVFPTCSDARVMWDQKTG---RSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~i~~d~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~ 202 (413)
....++|||+|||+++++++|+ ++|+.||.|.++++..++.++ +++|||||+|.+.++|.+|++.|+|..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 999999999999999887654 5669999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 015069 203 QIRCNWAAKGA 213 (413)
Q Consensus 203 ~i~v~~~~~~~ 213 (413)
+|.|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997764
No 257
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=123.04 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEE
Q 015069 249 NNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIK 322 (413)
Q Consensus 249 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~ 322 (413)
.....++|||+|||..+++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++. |+..|.|+.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456899999999999999999999999 99999999876 58999999999999999999 99999999999
Q ss_pred EEecCCCCC
Q 015069 323 CSWGSKPTP 331 (413)
Q Consensus 323 V~~a~~~~~ 331 (413)
|.|++++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 258
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.1e-17 Score=122.33 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC----CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK----SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~----~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.+.++|||+|||.++++++|+++|++||.|..+.++.++. +|||||+|.+.++|.+|++.||+..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4468999999999999999999999999999888887643 689999999999999999999999999999999987
Q ss_pred c
Q 015069 121 Y 121 (413)
Q Consensus 121 ~ 121 (413)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 259
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=118.42 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 38 LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 38 ~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.+......+.++|||+|| ++++++|+++|++||+|..|.+. +.+|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 334445567889999996 89999999999999999999884 66789999999999999999999999999999999
Q ss_pred EecccCCCC
Q 015069 118 NWAYASSQR 126 (413)
Q Consensus 118 ~~~~~~~~~ 126 (413)
.|+.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 260
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-17 Score=124.89 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=72.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
..++|||+|||..+++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 44789999999999999999999999 99999999866 69999999999999999999999999999999999
Q ss_pred cCCCC
Q 015069 326 GSKPT 330 (413)
Q Consensus 326 a~~~~ 330 (413)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98754
No 261
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.5e-17 Score=122.16 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=68.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
..++|||+|||+++|+++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|+. +||..|+|+.|+|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34789999999999999999999999 99999999875 7999999999999999999 8999999999999987
Q ss_pred C
Q 015069 327 S 327 (413)
Q Consensus 327 ~ 327 (413)
+
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 262
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.6e-16 Score=121.06 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=69.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGSKPT 330 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~-afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~~~~ 330 (413)
..|||+||++.+|+++|+++|++| |.|.+|++...+|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|++++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 456899999999999999999999 99999999876796 9999999999999999999999987 699999998765
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.1e-17 Score=124.38 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccC
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS 123 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~ 123 (413)
.++.++|||+|||.++++++|+++|++||.|..|.+.+ .++||||+|.+.++|.+|++.|||..|.|+.|.|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34568999999999999999999999999999998864 6679999999999999999999999999999999999764
Q ss_pred C
Q 015069 124 S 124 (413)
Q Consensus 124 ~ 124 (413)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=120.77 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcce-EEEEec---CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 41 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEG-CKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 41 ~~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~-v~i~~~---~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
.....+.++|||+|||+++++++|+++|+.||.|.+ |.|+.+ +.+|||||+|.+.++|.+|++. ++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 334456789999999999999999999999999987 777765 3478999999999999999986 99999999999
Q ss_pred EEecccCC
Q 015069 117 VNWAYASS 124 (413)
Q Consensus 117 v~~~~~~~ 124 (413)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 265
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=113.73 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=66.6
Q ss_pred cccE-EEEecCCCCCCHHH----HHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 252 QYTT-VYVGNLSSEVTSVD----LHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 252 ~~~~-l~V~nLp~~~t~e~----L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
++.+ |||+|||+++++++ |+++|++|| |+|.+|. .|+|||+|.+.++|.+|++.|||..|.||+|+|.|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4455 99999999999988 558999993 3999982 399999999999999999999999999999999999
Q ss_pred CCCCC
Q 015069 327 SKPTP 331 (413)
Q Consensus 327 ~~~~~ 331 (413)
+....
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87764
No 266
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.7e-17 Score=123.62 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=74.0
Q ss_pred ceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 133 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 133 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++|||+|||.++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.+ |.+|+..++|..++|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred C
Q 015069 213 A 213 (413)
Q Consensus 213 ~ 213 (413)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 267
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=124.88 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCe-eeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTC-SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
.....++|||+|||+++++++|+++|+.||.| .+++|++|+ +|+++|||||+|.+.++|.+|++. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999997 999999999999999999999996 999999999999
Q ss_pred EEccCC
Q 015069 207 NWAAKG 212 (413)
Q Consensus 207 ~~~~~~ 212 (413)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 268
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=121.34 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeee-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD-ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......+|||+|||+++++++|+++|+.||.|.+ ++++++ .+|+++|||||+|.+.++|.+|++. ++..++||.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456689999999999999999999999999987 888888 8899999999999999999999997 999999999999
Q ss_pred EEccCC
Q 015069 207 NWAAKG 212 (413)
Q Consensus 207 ~~~~~~ 212 (413)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 988654
No 269
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.5e-16 Score=123.48 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=70.8
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccE-EEEEeCCHHHHHHHHHHhCCCeeCC--eeEEEEecC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGF-GFVRYSTHPEAALAIQMGNARILCG--KPIKCSWGS 327 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~-afV~f~~~~~A~~A~~~l~g~~l~g--r~l~V~~a~ 327 (413)
....|||+||++.+|+++|+++|++| |.|.+|++.++ +|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 44668899999999999999999999 99999998765 677 9999999999999999999999988 999999998
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
...
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 270
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=124.21 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=78.2
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
..++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 357899999999999999999999999999999999999999999999999999999999997 9999999999999997
Q ss_pred CCCC
Q 015069 211 KGAT 214 (413)
Q Consensus 211 ~~~~ 214 (413)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7644
No 271
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=122.49 Aligned_cols=84 Identities=21% Similarity=0.507 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWL-------- 199 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l-------- 199 (413)
.....++|||+|||+++++++|+++|+.||.|.++++++++ ++.++|||||+|.+.++|.+|++.|+|..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34566899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred cCeEEEEEEccCC
Q 015069 200 GNRQIRCNWAAKG 212 (413)
Q Consensus 200 ~g~~i~v~~~~~~ 212 (413)
.+++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998653
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=121.36 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||+++++++|+++|+.||.+ +++|++|+ +++++|||||+|.+.++|++|++ +++..|+||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456789999999999999999999999955 99999997 89999999999999999999996 799999999999998
Q ss_pred ccCCC
Q 015069 209 AAKGA 213 (413)
Q Consensus 209 ~~~~~ 213 (413)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76543
No 273
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-16 Score=120.80 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=71.8
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccce----EEEEeec--cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTI----EDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i----~~v~~~~--~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..+.++|||+|||..+|+++|+++|+.| |.| ..+++.. .+|||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 998 5666553 3799999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 015069 324 SWGSKPTPP 332 (413)
Q Consensus 324 ~~a~~~~~~ 332 (413)
.|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.2e-16 Score=117.82 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=71.2
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..+.++|||+|||..+++++|+++|+.| |.|.+|+++++ +|||||+|.+.++|.+|++ ++..|+|+.|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 3445889999999999999999999999 99999999876 6899999999999999998 578999999999
Q ss_pred EecCCCCCC
Q 015069 324 SWGSKPTPP 332 (413)
Q Consensus 324 ~~a~~~~~~ 332 (413)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876543
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=112.81 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.6
Q ss_pred CCCCe-EEEcCCCccCCHHH----HHHHHhccC-CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 45 STCRS-VYVGNIHPQVTNAL----LQEVFSSTG-PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 45 ~~~~t-v~V~nLp~~~te~~----l~~~f~~~G-~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
.++.| |||+|||+++++++ |+++|++|| +|.+| ..|+|||.|.+.++|.+|++.|+|..+.||+|+|.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 34566 99999999999988 558999995 99888 23999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 015069 119 WAYASSQRE 127 (413)
Q Consensus 119 ~~~~~~~~~ 127 (413)
+++.++...
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 998776543
No 276
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.8e-16 Score=124.17 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCC---eeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
....++|||+|||+++++++|+++|+.||. |.++++++++. |+++|||||+|.+.++|.+|++ +++..|+||.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 455678999999999999999999999999 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 015069 206 CNWAAK 211 (413)
Q Consensus 206 v~~~~~ 211 (413)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999854
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.2e-16 Score=127.52 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCC---eeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
+....++|||+|||+++++++|+++|+.||. |.+++|++|+. |+++|||||+|.+.++|++|++ +++..|+||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3455678999999999999999999999999 89999999976 9999999999999999999999 99999999999
Q ss_pred EEEEccC
Q 015069 205 RCNWAAK 211 (413)
Q Consensus 205 ~v~~~~~ 211 (413)
.|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998743
No 278
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=124.48 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCc-ceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPL-EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v-~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
....+.++|||+|||+++++++|+++|+.||.| ..|+|+.++ .+|||||+|.+.++|.+|++. |+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 345667899999999999999999999999999 899998865 478999999999999999985 999999999999
Q ss_pred EecccC
Q 015069 118 NWAYAS 123 (413)
Q Consensus 118 ~~~~~~ 123 (413)
.++.++
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 279
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=123.39 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=72.4
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
...++|||+|||..+|+++|+++|+.| |.|..|+++++ +|||||+|.+.++|.+|++. |+..|+|+.|+|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345899999999999999999999999 99999999876 68999999999999999998 9999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|++++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987654
No 280
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-17 Score=120.27 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=70.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
+.++|||+|||..+++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45889999999999999999999999 99999999876 78999999999999999999999999999999988
Q ss_pred cCC
Q 015069 326 GSK 328 (413)
Q Consensus 326 a~~ 328 (413)
.++
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 281
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=76.3
Q ss_pred CceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 015069 132 HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 211 (413)
Q Consensus 132 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~ 211 (413)
.++|||+|||.++++++|+++|+.||.|.+++++.|+.++.++|||||+|.+.++|.+|+ .+++..|+|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999 8999999999999999854
Q ss_pred C
Q 015069 212 G 212 (413)
Q Consensus 212 ~ 212 (413)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 282
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=128.38 Aligned_cols=83 Identities=37% Similarity=0.540 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
......++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.++|..++|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 015069 207 NWA 209 (413)
Q Consensus 207 ~~~ 209 (413)
+|+
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 283
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-17 Score=126.89 Aligned_cols=76 Identities=29% Similarity=0.450 Sum_probs=70.6
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
..++|||+|||..+++++|+++|+.| |.|.+|+++.+ +|||||+|.+.++|.+|+ .|||..|.|+.|+|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 45899999999999999999999999 99999999854 689999999999999999 9999999999999999
Q ss_pred cCCCC
Q 015069 326 GSKPT 330 (413)
Q Consensus 326 a~~~~ 330 (413)
++...
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 97543
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=4.5e-16 Score=128.56 Aligned_cols=79 Identities=29% Similarity=0.413 Sum_probs=73.2
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||..+|+++|+++|+.| |.|.+|+|+++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455899999999999999999999999 99999999765 5899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 015069 325 WGSKPTP 331 (413)
Q Consensus 325 ~a~~~~~ 331 (413)
|+++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986543
No 285
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=121.68 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=75.5
Q ss_pred CCCCCceEEEcCCCccc------ChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 128 DTSGHFNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
.....++|||+|||+.+ ++++|+++|+.||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456799999999999 779999999999999999988 4789999999999999999999999999999999
Q ss_pred e-EEEEEEccCC
Q 015069 202 R-QIRCNWAAKG 212 (413)
Q Consensus 202 ~-~i~v~~~~~~ 212 (413)
+ +|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 9 9999998644
No 286
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=119.20 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 42 FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
......++|||+|||++++++||+++|+.||.+ +|+|+.++. +|||||+|.+.++|.+|++ +|+..|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345567899999999999999999999999955 899998753 6799999999999999995 89999999999999
Q ss_pred ecccCC
Q 015069 119 WAYASS 124 (413)
Q Consensus 119 ~~~~~~ 124 (413)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 287
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=116.33 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
..+.++|||+|||.++++++|+++|+.| .|.+|.++.+.. +|||||+|.+.++|.+|++ +|+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 899999998733 6899999999999999999 9999999999999998
Q ss_pred ccCC
Q 015069 121 YASS 124 (413)
Q Consensus 121 ~~~~ 124 (413)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 288
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.3e-16 Score=120.52 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCccCCHHHHH----HHHhccCCcceEEEEec-CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQ----EVFSSTGPLEGCKLIKK-DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~-~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..++++|||+|||.++++++|+ ++|++||.|..|.+.+. +.+|||||+|.+.++|.+|++.|+|..|.|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 99999999999988743 347899999999999999999999999999999999
Q ss_pred ecccCC
Q 015069 119 WAYASS 124 (413)
Q Consensus 119 ~~~~~~ 124 (413)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997754
No 289
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=116.67 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=70.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEE-eecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVR-VQRD--KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~-~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
...++|||+|||+.+++++|+++|+.| |.|.+|+ +..+ .|.|||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345789999999999999999999999 9999995 7766 4569999999999999999999999999999999998
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 290
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-16 Score=117.71 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=69.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeec---cccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR---DKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
..+.++|||+|||.++|+++|+++|+.| +.|.-+.... .+|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3455889999999999999999999998 6555443321 2699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015069 327 SKPTPP 332 (413)
Q Consensus 327 ~~~~~~ 332 (413)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876543
No 291
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=117.70 Aligned_cols=86 Identities=30% Similarity=0.509 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 126 REDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 126 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
.......++|||+|||.++++++|+++|+.|+ +++++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456678999999999999999999999773 678888888999999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 015069 206 CNWAAKGAT 214 (413)
Q Consensus 206 v~~~~~~~~ 214 (413)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999977644
No 292
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=120.11 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=70.3
Q ss_pred cccEEEEecCCCCC------CHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe-e
Q 015069 252 QYTTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK-P 320 (413)
Q Consensus 252 ~~~~l~V~nLp~~~------t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr-~ 320 (413)
..++|||+|||..+ |+++|+++|+.| |.|.+|++.+. +|||||+|.+.++|.+|++.|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35789999999999 789999999999 99999999843 79999999999999999999999999998 9
Q ss_pred EEEEecCCC
Q 015069 321 IKCSWGSKP 329 (413)
Q Consensus 321 l~V~~a~~~ 329 (413)
|+|.|++..
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=115.81 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=68.0
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecccc-EEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg-~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
..++|||+|||..+|+++|+++|+.| |.|.+|.+.+..| ||||+|.+.++|.+|++ |||..|+|+.|+|.++..+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34789999999999999999999999 9999984444333 99999999999999999 99999999999999987554
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 294
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.8e-16 Score=116.38 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
+..++|||+|||.++++++|+++|++| +|.+|++. +.+|||||+|.+.++|.+|++.|||..+.|++|+|+++..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 457899999999999999999999999 99999884 678899999999999999999999999999999999986654
No 295
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=5.1e-16 Score=114.92 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=69.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.++|||+|||+++++++|+++|+.| .|.++++.+.+|||||+|.+.++|.+|++.|||..++|++|+|.|+....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4789999999999999999999999 68888888889999999999999999999999999999999999986543
No 296
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=126.83 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEE
Q 015069 128 DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN 207 (413)
Q Consensus 128 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~ 207 (413)
.....++|||+|||+++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ +++..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456899999999999999999999999999997777777899999999999999999999999 99999999999999
Q ss_pred EccCC
Q 015069 208 WAAKG 212 (413)
Q Consensus 208 ~~~~~ 212 (413)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98543
No 297
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=125.00 Aligned_cols=77 Identities=32% Similarity=0.545 Sum_probs=70.8
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeE
Q 015069 248 ENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPI 321 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l 321 (413)
....+.++|||+|||..+++++|+++|+.| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|++|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 334456899999999999999999999999 99999999865 7999999999999999999999999999999
Q ss_pred EEEec
Q 015069 322 KCSWG 326 (413)
Q Consensus 322 ~V~~a 326 (413)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
No 298
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=119.78 Aligned_cols=77 Identities=22% Similarity=0.485 Sum_probs=71.1
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCee--------C
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARIL--------C 317 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l--------~ 317 (413)
...++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.|||..| .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 445889999999999999999999999 99999999876 78999999999999999999999999 5
Q ss_pred CeeEEEEecCCC
Q 015069 318 GKPIKCSWGSKP 329 (413)
Q Consensus 318 gr~l~V~~a~~~ 329 (413)
+++|.|.|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999754
No 299
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=4.5e-16 Score=123.31 Aligned_cols=76 Identities=26% Similarity=0.503 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
.++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4789999999999999999999999 99999999865 789999999999999999 79999999999999999
Q ss_pred CCCCC
Q 015069 327 SKPTP 331 (413)
Q Consensus 327 ~~~~~ 331 (413)
+...+
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86443
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=123.83 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCC---cceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
..+.++|||+|||+++++++|+++|+.||. |..|+|+.++. +|||||+|.+.++|.+|++ +|+..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 89999998754 6899999999999999998 9999999999999
Q ss_pred Eeccc
Q 015069 118 NWAYA 122 (413)
Q Consensus 118 ~~~~~ 122 (413)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 301
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.3e-16 Score=114.36 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=65.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 255 TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 255 ~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
+|||+|||.++++++|+++|+.| |.|.++++.++ +|+|||+|.+.++|.+|++ |||..|+|++|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999 99999999865 5899999999999999998 8999999999999985
No 302
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=4.5e-16 Score=121.34 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=67.9
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee-----EEEEec
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP-----IKCSWG 326 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~-----l~V~~a 326 (413)
..++|||+|||+++++++|+++|+.| |.|.+|.+..+ |||||+|.+.++|.+|++.|||..|+|+. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 34789999999999999999999999 99999999988 99999999999999999999999999998 777777
Q ss_pred CCCC
Q 015069 327 SKPT 330 (413)
Q Consensus 327 ~~~~ 330 (413)
++..
T Consensus 92 ~~~~ 95 (115)
T 3beg_B 92 GPRS 95 (115)
T ss_dssp C---
T ss_pred CCCC
Confidence 6544
No 303
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.6e-17 Score=120.78 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=67.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
++|||+|||.++++++|+++|+.| |.|.++++.++ +|||||+|.+.+ |.+|++.|||..|+|++|+|.|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 679999999999999999999999 99999999865 789999999999 999999999999999999999997
Q ss_pred CCCC
Q 015069 328 KPTP 331 (413)
Q Consensus 328 ~~~~ 331 (413)
+...
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 304
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6.5e-16 Score=121.11 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCce-EEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAY 121 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~-afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~ 121 (413)
+...+|||+||++.+|+++|+++|++||+|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 345668899999999999999999999999999888754 566 9999999999999999999999998 899999998
Q ss_pred cCCC
Q 015069 122 ASSQ 125 (413)
Q Consensus 122 ~~~~ 125 (413)
+...
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7654
No 305
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=122.60 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCcccChHHHHhhhccCCC---eeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeE
Q 015069 127 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPT---CSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQ 203 (413)
Q Consensus 127 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~ 203 (413)
.......+|||+|||+++++++|+++|+.||. |.++++++|+. |+++|||||+|.+.++|.+|++ +++..++||.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34456788999999999999999999999998 89999999976 9999999999999999999999 9999999999
Q ss_pred EEEEEccC
Q 015069 204 IRCNWAAK 211 (413)
Q Consensus 204 i~v~~~~~ 211 (413)
|.|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998754
No 306
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=114.43 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=67.6
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
++|||+|||.++++++|+++|++||+|.+|.+..++ ++|||||+|.+.++|.+|++.++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999875 37899999999999999999888 9999999999986
No 307
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=9e-17 Score=154.04 Aligned_cols=78 Identities=18% Similarity=0.423 Sum_probs=72.8
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
.+.++|||+|||+.+|+++|+++|+.| |.|..|.|+.+ +|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999999999999999999 99999999865 7999999999999999999999999999999999
Q ss_pred ecCCCC
Q 015069 325 WGSKPT 330 (413)
Q Consensus 325 ~a~~~~ 330 (413)
|++...
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998654
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.2e-16 Score=119.35 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=68.8
Q ss_pred CCCCCeEEE--cCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcc-----cCcceE
Q 015069 44 ASTCRSVYV--GNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI-----FGQPIK 116 (413)
Q Consensus 44 ~~~~~tv~V--~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i-----~g~~l~ 116 (413)
..++++||| +||++++++++|+++|++||+|.+|.+.. ++|||||+|.+.++|.+|++.|||..+ .|++|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 345788999 77999999999999999999999998864 468999999999999999999999988 688999
Q ss_pred EEeccc
Q 015069 117 VNWAYA 122 (413)
Q Consensus 117 v~~~~~ 122 (413)
|.++..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 998753
No 309
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=119.75 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=71.7
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
...+|||+|||++++++||+++|+.| .|.+++|++|+. |+++|||||+|.+.++|.+|+ .+++..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999 899999999965 999999999999999999999 599999999999998774
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.7e-15 Score=118.33 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=68.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCce-EEEEEcCHHHHHHHHHHhCCCcccC--cceEEEecccCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSY-GFVDYFDRRSAALAIVTLNGRHIFG--QPIKVNWAYASS 124 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~-afV~F~~~~~A~~A~~~l~~~~i~g--~~l~v~~~~~~~ 124 (413)
..|||+|||+.+++++|+++|++||.|.+|+|+.. .|+ |||+|.+.++|..|++.|||..|.| +.|+|.+++++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 44789999999999999999999999999999764 486 9999999999999999999999988 689999998765
No 311
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=8.7e-16 Score=115.76 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEe-eccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV-QRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~-~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
..+.++|||+|||..+++++|+++|+.| |.|..+.. .+.+|||||+|.+.++|.+|++.|||..|.|++|+|.|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456899999999999999999999999 99988811 12389999999999999999999999999999999999977
Q ss_pred CCC
Q 015069 329 PTP 331 (413)
Q Consensus 329 ~~~ 331 (413)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 312
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=119.56 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=67.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEee------ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ------RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~------~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
..++|||+|||.++|+++|+++|+.| |.|.. .++ +.+|||||+|.+.++|.+|++ |||..|.|+.|+|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 45899999999999999999999999 98776 333 338999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987543
No 313
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.7e-16 Score=120.62 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=71.9
Q ss_pred ceEEEcCC----CcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 015069 133 FNVFVGDL----SPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRN----QED----AQSAIN--DLNGKW 198 (413)
Q Consensus 133 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 198 (413)
..|+|+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999999999999999999996 333 888988 689999
Q ss_pred ecCeEEEEEEccCC
Q 015069 199 LGNRQIRCNWAAKG 212 (413)
Q Consensus 199 l~g~~i~v~~~~~~ 212 (413)
|+||+|+|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987543
No 314
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=119.37 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|||.++++++|+++|+.||.|..+ ....+.+|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999988876 22334578999999999999999999999999999999999976
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 315
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=6.9e-17 Score=115.83 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=71.4
Q ss_pred eEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 134 NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 134 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
+|||+|||+++++++|+++|+.||+|.++.+.+++.+++++|||||+|.+.++|.+|++ .++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999 5889999999999874
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=115.73 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCC-ceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~-g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
....++|||+|||.++++++|+++|+.||+|.+| +.++.. .||||+|.+.++|.+|++ |++..|.|+.|.|+++.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3456899999999999999999999999999987 333322 299999999999999999 999999999999998876
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 317
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-17 Score=123.55 Aligned_cols=84 Identities=29% Similarity=0.455 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||+++++++|+++|+.||.|.. .++.++.+++++|||||+|.+.++|.+|++ ++|..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 677777889999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 015069 209 AAKGAT 214 (413)
Q Consensus 209 ~~~~~~ 214 (413)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 876543
No 318
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=7e-16 Score=114.00 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=67.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCcc-----------ceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVG-----------TIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP 320 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G-----------~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~ 320 (413)
+.++|||+|||.++++++|+++|+.| | .|.++++.+++|||||+|.+.++|.+|+ .|||..|.|++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQ--MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH--HHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH--hhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 45889999999999999999999998 4 7999999999999999999999999999 99999999999
Q ss_pred EEEEe
Q 015069 321 IKCSW 325 (413)
Q Consensus 321 l~V~~ 325 (413)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 319
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.4e-16 Score=124.92 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCC---cceEEEEecCC---CceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKDK---SSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~~---~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
...+.++|||+|||+++|++||+++|+.||. |.+|+|+.++. +|||||+|.+.++|.+|++ +|+..|.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999999 89999998753 6899999999999999999 999999999999
Q ss_pred EEeccc
Q 015069 117 VNWAYA 122 (413)
Q Consensus 117 v~~~~~ 122 (413)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 320
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=115.71 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=67.2
Q ss_pred ceEEEcCCCccc------ChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCe-EEE
Q 015069 133 FNVFVGDLSPEV------TDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR-QIR 205 (413)
Q Consensus 133 ~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~-~i~ 205 (413)
++|||+|||..+ ++++|+++|+.||.|.++++. +.+|+++|||||+|.+.++|.+|++.++|..++|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 679999999999999999987 46899999999999999999999999999999999 886
Q ss_pred E
Q 015069 206 C 206 (413)
Q Consensus 206 v 206 (413)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 321
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=114.59 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=64.3
Q ss_pred cEEEEecCCCCC------CHHHHHHHhhccCccceEEEEeecc----ccEEEEEeCCHHHHHHHHHHhCCCeeCCe-eEE
Q 015069 254 TTVYVGNLSSEV------TSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEAALAIQMGNARILCGK-PIK 322 (413)
Q Consensus 254 ~~l~V~nLp~~~------t~e~L~~~F~~~~~G~i~~v~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~l~gr-~l~ 322 (413)
++|||+|||..+ ++++|+++|++| |.|.++++.++ +|||||+|.+.++|.+|++.|||..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999 99999999853 79999999999999999999999999999 888
Q ss_pred EE
Q 015069 323 CS 324 (413)
Q Consensus 323 V~ 324 (413)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 322
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=3.4e-16 Score=137.19 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCceEEEcCCCcccChHHHHhhhccCC--CeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 131 GHFNVFVGDLSPEVTDATLFACFSVFP--TCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 131 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
..++|||+||++++++++|+++|+.|| .|.+|+|++|+.++++||||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 015069 209 AAK 211 (413)
Q Consensus 209 ~~~ 211 (413)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=6.3e-16 Score=120.48 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcc-----eEEEe
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP-----IKVNW 119 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~-----l~v~~ 119 (413)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|.+|++.||+..|.|+. |+|..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45688999999999999999999999999999999776 89999999999999999999999999998 77776
Q ss_pred cccCC
Q 015069 120 AYASS 124 (413)
Q Consensus 120 ~~~~~ 124 (413)
..+..
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 65443
No 324
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=120.32 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCC---cceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGP---LEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
...+.++|||+|||+++++++|+++|+.||. |..|.|+.++ .+|||||+|.+.++|.+|++ +++..|.|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999988 8999998865 47899999999999999998 999999999999
Q ss_pred EEecccC
Q 015069 117 VNWAYAS 123 (413)
Q Consensus 117 v~~~~~~ 123 (413)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988643
No 325
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=9.2e-16 Score=120.40 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=71.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
.+.++|||+|+ ++|+++|+++|+.| |.|.+|++.+++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 44689999996 69999999999999 999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 326
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5e-16 Score=122.95 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
...+.++|||+|||+++++++|+++|+.||.|..+.++.+. .+|||||+|.+.++|.+|++ +|+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999999885555432 36899999999999999999 99999999999999
Q ss_pred ecccC
Q 015069 119 WAYAS 123 (413)
Q Consensus 119 ~~~~~ 123 (413)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 327
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.6e-16 Score=127.28 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=73.7
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCCCCCCCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEe
Q 015069 86 SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (413)
Q Consensus 86 g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~ 165 (413)
++++.+|.-++.+..++...... ..|....-... ...........++|||+|||+++++++|+++|+.|| |.+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 35666666666555555432221 22222211111 111123344567899999999999999999999999 6799999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 015069 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 213 (413)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~~ 213 (413)
+|+. ++++|||||+|.+.++|++|+ .+++..|+||.|.|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9975 999999999999999999999 689999999999999886543
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=112.20 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=62.9
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCe--eCCeeEEEEecC
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARI--LCGKPIKCSWGS 327 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~--l~gr~l~V~~a~ 327 (413)
++..+|||+|||+++|+++|+++|+.| |.|.+|+++++ ||||||+|.+.++|.+ |++.. +.|++|.|.+++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 445889999999999999999999999 99999999976 9999999999999883 46665 569999999997
Q ss_pred CCC
Q 015069 328 KPT 330 (413)
Q Consensus 328 ~~~ 330 (413)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=118.97 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY 121 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~ 121 (413)
.+.++|||+|||++++++||+++|+.| .|.+|.|+.++ .+|||||+|.+.++|.+|+ .+|+..|.||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 445799999999999999999999999 89999998764 4789999999999999999 599999999999998775
Q ss_pred c
Q 015069 122 A 122 (413)
Q Consensus 122 ~ 122 (413)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 330
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=121.78 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCe----eeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTC----SDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
....+|||+|||++++++||+++|+.||.| .+|+|++| .+|+++|||||+|.+.++|.+|++. ++..++||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345789999999999999999999999975 68999998 5899999999999999999999995 99999999999
Q ss_pred EEEccC
Q 015069 206 CNWAAK 211 (413)
Q Consensus 206 v~~~~~ 211 (413)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 331
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=2.4e-15 Score=117.99 Aligned_cols=79 Identities=27% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEeccc
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA 122 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~ 122 (413)
...+.++|||+|| ++++++|+++|++||+|.+|.+. +.+|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3456789999996 69999999999999999999986 5678999999999999999999999999999999999987
Q ss_pred CCC
Q 015069 123 SSQ 125 (413)
Q Consensus 123 ~~~ 125 (413)
...
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 332
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-17 Score=128.20 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeee--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSD--------ARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 200 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 200 (413)
..+.++|||+|||.++++++|+++|+.||.|.+ ++++.++.+++++|||||+|.+.++|.+|++.|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 455678999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 015069 201 NRQIRCNWAAKGAT 214 (413)
Q Consensus 201 g~~i~v~~~~~~~~ 214 (413)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999876543
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=3.9e-16 Score=119.08 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEc
Q 015069 130 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 209 (413)
Q Consensus 130 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~ 209 (413)
...++|||+|||+++++++|+++|+.||.|.+++++.++ +|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345789999999999999999999999999999999997 99999999999999999999999 999999999999998
Q ss_pred cCCC
Q 015069 210 AKGA 213 (413)
Q Consensus 210 ~~~~ 213 (413)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=5.3e-16 Score=111.15 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=65.9
Q ss_pred eEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC----CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 49 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 49 tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
+|||+|||.++++++|+++|++||+|.+|.+..++ ++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999998764 47899999999999999998 6999999999999874
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=112.47 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCc--ccCcceEEEecc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRH--IFGQPIKVNWAY 121 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~--i~g~~l~v~~~~ 121 (413)
..+..+|||+|||+++++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 345679999999999999999999999999999999875 78999999999999983 55555 458999999987
Q ss_pred cCC
Q 015069 122 ASS 124 (413)
Q Consensus 122 ~~~ 124 (413)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.1e-15 Score=112.85 Aligned_cols=73 Identities=22% Similarity=0.498 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhcc----C-------CcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSST----G-------PLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
..+.++|||+|||.++++++|+++|++| | +|.++.+.++ +|||||+|.+.++|.+|+ .||+..|.|
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3567899999999999999999999999 8 8998888654 689999999999999999 899999999
Q ss_pred cceEEEe
Q 015069 113 QPIKVNW 119 (413)
Q Consensus 113 ~~l~v~~ 119 (413)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999984
No 337
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.6e-15 Score=132.02 Aligned_cols=79 Identities=23% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCcccEEEEecCCCCC---------CHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee----
Q 015069 250 NPQYTTVYVGNLSSEV---------TSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---- 316 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~---------t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l---- 316 (413)
....++|||+||+..+ ++++|+++|+.| |.|.+|+++++||||||+|.+.++|..|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 3456899999999998 799999999999 9999999999999999999999999999999999999
Q ss_pred --------CCeeEEEEecCCCC
Q 015069 317 --------CGKPIKCSWGSKPT 330 (413)
Q Consensus 317 --------~gr~l~V~~a~~~~ 330 (413)
.|+.|.|.||+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=3.2e-15 Score=125.51 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
...+.++|||+|||.++++++|+++|+.||+|..|.|..++ .+|||||+|.+.++|.+|++.|++..|.|+.|.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999998864 478999999999999999999999999999999999
Q ss_pred cccCC
Q 015069 120 AYASS 124 (413)
Q Consensus 120 ~~~~~ 124 (413)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87643
No 339
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=113.78 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEecccCC
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASS 124 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~~~~~ 124 (413)
.++++|||+|||.++++++|+++|++||+|.+|.++.+ .+|||||+|.+.++|.++.. ....+.|+.|.|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 45789999999999999999999999999999999865 68999999999999976432 1344589999999988765
Q ss_pred CCC
Q 015069 125 QRE 127 (413)
Q Consensus 125 ~~~ 127 (413)
...
T Consensus 80 ~~~ 82 (88)
T 1wf0_A 80 NSN 82 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 340
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=9.3e-16 Score=120.39 Aligned_cols=80 Identities=23% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCee--eEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCS--DARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
.....+|||+|||+++++++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|.+|++ .++..|+||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456789999999999999999999999 566 899999976 9999999999999999999999 5779999999999
Q ss_pred EEccC
Q 015069 207 NWAAK 211 (413)
Q Consensus 207 ~~~~~ 211 (413)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88743
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=1.9e-15 Score=126.86 Aligned_cols=83 Identities=29% Similarity=0.373 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNW 208 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~ 208 (413)
....++|||+|||+.+++++|+++|+.||.|.++.++.++ ++.++|||||+|.+.++|.+|++.++|..|+|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 015069 209 AAKG 212 (413)
Q Consensus 209 ~~~~ 212 (413)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=121.33 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceE--------EEEe-cCCCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGC--------KLIK-KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v--------~i~~-~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
..++++|||+|||.++++++|+++|+.||.|..| .+.. .+.+|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4557899999999999999999999999998864 3333 356899999999999999999999999999999
Q ss_pred eEEEecccCCCC
Q 015069 115 IKVNWAYASSQR 126 (413)
Q Consensus 115 l~v~~~~~~~~~ 126 (413)
|.|.++.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999776543
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=122.33 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=70.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHhhccCccceEE--------EEee---ccccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 250 NPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQ---RDKGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 250 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~--------v~~~---~~kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
..+.++|||+|||+.+|+++|+++|+.| |.|.. +++. +.+|||||+|.+.++|.+|++.|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3455899999999999999999999999 88765 3333 348999999999999999999999999999
Q ss_pred eeEEEEecCCCCC
Q 015069 319 KPIKCSWGSKPTP 331 (413)
Q Consensus 319 r~l~V~~a~~~~~ 331 (413)
++|+|.|+++..+
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=111.75 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=65.4
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKPT 330 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~~ 330 (413)
..++|||+|||.++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|... ...+.|++|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 34889999999999999999999999 99999999877 99999999999999754221 235699999999998765
Q ss_pred C
Q 015069 331 P 331 (413)
Q Consensus 331 ~ 331 (413)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=119.25 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCc----ceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPL----EGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v----~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.+.++|||+|||+++|++||+++|++||+| .+|.|+.++ .+|||||+|.+.++|.+|++. |+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 689998864 368999999999999999984 999999999999
Q ss_pred Eeccc
Q 015069 118 NWAYA 122 (413)
Q Consensus 118 ~~~~~ 122 (413)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87653
No 346
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.5e-15 Score=133.00 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=69.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCcc--ceEEEEeecc------ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEE
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVG--TIEDVRVQRD------KGFGFVRYSTHPEAALAIQMGNARILCGKPIKC 323 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G--~i~~v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V 323 (413)
..++|||+||++.+|+++|+++|+.| | .|.+|+|+++ ||||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 34789999999999999999999999 9 9999999876 689999999999999999999999999999999
Q ss_pred EecCC
Q 015069 324 SWGSK 328 (413)
Q Consensus 324 ~~a~~ 328 (413)
.|+++
T Consensus 145 ~~a~~ 149 (229)
T 3q2s_C 145 TPVNK 149 (229)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 347
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=9.7e-17 Score=125.54 Aligned_cols=79 Identities=27% Similarity=0.457 Sum_probs=72.3
Q ss_pred CcccEEEEecCCCCCCHHHHHHHhhccCccceEE--------EEeecc------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 015069 251 PQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIED--------VRVQRD------KGFGFVRYSTHPEAALAIQMGNARIL 316 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~--------v~~~~~------kg~afV~f~~~~~A~~A~~~l~g~~l 316 (413)
.+.++|||+|||..+++++|+++|+.| |.|.. |++..+ +|||||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 345789999999999999999999999 99998 888765 68999999999999999999999999
Q ss_pred CCeeEEEEecCCCCC
Q 015069 317 CGKPIKCSWGSKPTP 331 (413)
Q Consensus 317 ~gr~l~V~~a~~~~~ 331 (413)
.|++|+|.|++++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987654
No 348
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=9.2e-16 Score=122.82 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEe
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNW 119 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~ 119 (413)
.....++|||+|||+++|++||+++|++|| |.+|.|+.++ ++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345568999999999999999999999999 6699998764 4789999999999999999 6999999999999998
Q ss_pred cccCC
Q 015069 120 AYASS 124 (413)
Q Consensus 120 ~~~~~ 124 (413)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.2e-15 Score=118.30 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCccCCHHHHHHHHhccCCcc--eEEEEecC---CCceEEEEEcCHHHHHHHHHHhCCCcccCcceEE
Q 015069 43 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLE--GCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKV 117 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~--~v~i~~~~---~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v 117 (413)
.....++|||+|||+++|+++|+++|+.| .|. +|.|+.++ .+|||||+|.+.++|.+|++ +++..|.||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34557889999999999999999999999 566 89988764 47899999999999999998 5889999999999
Q ss_pred EecccC
Q 015069 118 NWAYAS 123 (413)
Q Consensus 118 ~~~~~~ 123 (413)
.++..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987543
No 350
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.4e-15 Score=114.67 Aligned_cols=75 Identities=21% Similarity=0.468 Sum_probs=69.7
Q ss_pred cccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 015069 252 QYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWG 326 (413)
Q Consensus 252 ~~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a 326 (413)
..++|||+|||.++++++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++ ++..|+|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 45889999999999999999999999 99999999875 6999999999999999998 999999999999998
Q ss_pred CCCC
Q 015069 327 SKPT 330 (413)
Q Consensus 327 ~~~~ 330 (413)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7554
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.8e-14 Score=109.75 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCc-----ccChHHHHhhhccCCCeeeEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 015069 129 TSGHFNVFVGDLSP-----EVTDATLFACFSVFPTCSDARVMWDQKT-GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNR 202 (413)
Q Consensus 129 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~~~i~~d~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~ 202 (413)
..++++|+|.|+.. +-++++|++.|++||.|.++.|++++.+ ++++|++||+|.+.++|.+|++.|||+.++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34567899999963 2367899999999999999999988654 68999999999999999999999999999999
Q ss_pred EEEEEEcc
Q 015069 203 QIRCNWAA 210 (413)
Q Consensus 203 ~i~v~~~~ 210 (413)
.|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999984
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-14 Score=110.19 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCccCC-----------HHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcc
Q 015069 42 FDASTCRSVYVGNIHPQVT-----------NALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI 110 (413)
Q Consensus 42 ~~~~~~~tv~V~nLp~~~t-----------e~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i 110 (413)
....++++|+|.||....+ +++|+++|++||+|.+|.|.....+|||||+|.+.++|.+|++.|||..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3556789999999944332 68999999999999999775445689999999999999999999999999
Q ss_pred cCcceEEEecccCC
Q 015069 111 FGQPIKVNWAYASS 124 (413)
Q Consensus 111 ~g~~l~v~~~~~~~ 124 (413)
.|+.|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987654
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=1.8e-14 Score=122.76 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHh--CCCcccCcceEEEecccCCCCC------CCCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEe
Q 015069 94 DRRSAALAIVTL--NGRHIFGQPIKVNWAYASSQRE------DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVM 165 (413)
Q Consensus 94 ~~~~A~~A~~~l--~~~~i~g~~l~v~~~~~~~~~~------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~ 165 (413)
+.+.+..|+... ....+.+....|+.......+. .....++|||+|||+++++++|+++|+.||.|.++++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667778888755 3445666666776653211111 11235789999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 015069 166 WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKG 212 (413)
Q Consensus 166 ~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~~~ 212 (413)
++. ++.++|||||+|.+.++|.+|++.+ +..++|+.|.|.+....
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 5899999999999999999999855 56899999999987554
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.4e-14 Score=108.97 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=67.2
Q ss_pred CcccEEEEecCCC-----CCCHHHHHHHhhccCccceEEEEeecc-------ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 251 PQYTTVYVGNLSS-----EVTSVDLHRHFHALCVGTIEDVRVQRD-------KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 251 ~~~~~l~V~nLp~-----~~t~e~L~~~F~~~~~G~i~~v~~~~~-------kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
.++++|+|.||.. +.++++|+++|++| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||+.|.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3458899999963 23789999999999 99999999853 7999999999999999999999999999
Q ss_pred eeEEEEecCC
Q 015069 319 KPIKCSWGSK 328 (413)
Q Consensus 319 r~l~V~~a~~ 328 (413)
|.|+|.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999853
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=111.05 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=67.5
Q ss_pred CCCCceEEEcCCCcccChHHHHhhhccCCCeeeEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEE
Q 015069 129 TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKT---GRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 205 (413)
Q Consensus 129 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~d~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~ 205 (413)
....++|||+|||+++++++|+++|+.||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34567899999999999999999999999999 888888777 7999999999999999999999883 36677666
Q ss_pred EEEc
Q 015069 206 CNWA 209 (413)
Q Consensus 206 v~~~ 209 (413)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.6e-14 Score=124.38 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCccC---------CHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcc---
Q 015069 43 DASTCRSVYVGNIHPQV---------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHI--- 110 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~~---------te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i--- 110 (413)
....+++|||+|||.++ +|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|..|++.|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 35678999999999998 79999999999999999999864 67999999999999999999999999
Q ss_pred ---------cCcceEEEecccCC
Q 015069 111 ---------FGQPIKVNWAYASS 124 (413)
Q Consensus 111 ---------~g~~l~v~~~~~~~ 124 (413)
.|+.|.|+|+..+.
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=110.65 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEec-------CCCceEEEEEcCHHHHHHHHHHhCCCcccCcceE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK-------DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIK 116 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~-------~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~ 116 (413)
....++|||+|||+++++++|+++|++||+|. +.++.+ +.+|||||+|.+.++|.+|++.++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45678999999999999999999999999999 777664 347899999999999999999884 36677776
Q ss_pred EEec
Q 015069 117 VNWA 120 (413)
Q Consensus 117 v~~~ 120 (413)
+...
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6643
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-13 Score=106.51 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=68.2
Q ss_pred CcccEEEEecCCCCCC-----------HHHHHHHhhccCccceEEEEeec--cccEEEEEeCCHHHHHHHHHHhCCCeeC
Q 015069 251 PQYTTVYVGNLSSEVT-----------SVDLHRHFHALCVGTIEDVRVQR--DKGFGFVRYSTHPEAALAIQMGNARILC 317 (413)
Q Consensus 251 ~~~~~l~V~nLp~~~t-----------~e~L~~~F~~~~~G~i~~v~~~~--~kg~afV~f~~~~~A~~A~~~l~g~~l~ 317 (413)
.+.++|+|+||....+ +++|+++|++| |.|.+|.+.. .+|||||+|.+.++|.+|++.|||+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4568999999944332 58999999999 9999997742 3899999999999999999999999999
Q ss_pred CeeEEEEecCCCCC
Q 015069 318 GKPIKCSWGSKPTP 331 (413)
Q Consensus 318 gr~l~V~~a~~~~~ 331 (413)
||+|+|.|+++...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999976543
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=7.8e-14 Score=118.84 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=67.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.++|||+|||+++|+++|+++|+.| |.|.+|++.++ +|||||+|.+.++|.+|++.+ +..|+|++|+|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 3789999999999999999999999 99999999864 799999999999999999875 459999999999986
Q ss_pred CC
Q 015069 328 KP 329 (413)
Q Consensus 328 ~~ 329 (413)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.2e-14 Score=109.11 Aligned_cols=73 Identities=12% Similarity=0.239 Sum_probs=65.2
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhccCccceEEEEeecc------ccEEEEEeCC----HHH----HHHHHH--HhCC
Q 015069 254 TTVYVGNL----SSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYST----HPE----AALAIQ--MGNA 313 (413)
Q Consensus 254 ~~l~V~nL----p~~~t~e~L~~~F~~~~~G~i~~v~~~~~------kg~afV~f~~----~~~----A~~A~~--~l~g 313 (413)
..|||+|| |+.+++++|+++|+.| |+|.+|.+..| +|||||+|.+ +++ |.+|+. .|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 67999999 9999999999999999 99999999977 7999999996 433 788988 7899
Q ss_pred CeeCCeeEEEEecCC
Q 015069 314 RILCGKPIKCSWGSK 328 (413)
Q Consensus 314 ~~l~gr~l~V~~a~~ 328 (413)
..|+||+|+|.+.+.
T Consensus 81 ~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 CFIMGFKFEVILNKH 95 (136)
T ss_dssp EEETTEEEEEEECCT
T ss_pred CeecCcEEEEEECcc
Confidence 999999999998754
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.3e-13 Score=105.00 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=66.2
Q ss_pred CcccEEEEecC--CCCCC--------HHHHHHHhhccCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhC
Q 015069 251 PQYTTVYVGNL--SSEVT--------SVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGN 312 (413)
Q Consensus 251 ~~~~~l~V~nL--p~~~t--------~e~L~~~F~~~~~G~i~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~ 312 (413)
.++++|.|.|+ |..+. +++|++.|++| |.|.+|+|+++ +|++||+|.+.++|.+|++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 45688999998 33443 37999999999 99999999864 6999999999999999999999
Q ss_pred CCeeCCeeEEEEecC
Q 015069 313 ARILCGKPIKCSWGS 327 (413)
Q Consensus 313 g~~l~gr~l~V~~a~ 327 (413)
|+.++||.|+|.|..
T Consensus 81 G~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 81 GRKFANRVVVTKYCD 95 (105)
T ss_dssp TCEETTEECEEEEEC
T ss_pred CCEeCCCEEEEEEeC
Confidence 999999999999874
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=2.1e-13 Score=103.77 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=70.3
Q ss_pred CCCceEEEcCC--CcccC--------hHHHHhhhccCCCeeeEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 015069 130 SGHFNVFVGDL--SPEVT--------DATLFACFSVFPTCSDARVMWDQKT--GRSRGFGFVSFRNQEDAQSAINDLNGK 197 (413)
Q Consensus 130 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~~~i~~d~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~ 197 (413)
.+++.|.|.|+ |..+. ++||++.|++||.|.+++|.+++.+ ++++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45678999998 33443 3689999999999999999988654 468999999999999999999999999
Q ss_pred eecCeEEEEEEcc
Q 015069 198 WLGNRQIRCNWAA 210 (413)
Q Consensus 198 ~l~g~~i~v~~~~ 210 (413)
.++||.|.|.|..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-12 Score=98.07 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=62.9
Q ss_pred cEEEEecCC-------CCCCHHHHHHHhhccCccceEEEEee-ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 015069 254 TTVYVGNLS-------SEVTSVDLHRHFHALCVGTIEDVRVQ-RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSW 325 (413)
Q Consensus 254 ~~l~V~nLp-------~~~t~e~L~~~F~~~~~G~i~~v~~~-~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~ 325 (413)
.+|.|.-.. ..+++++|+++|++| |.|.+|+++ +.+|||||+|.+.++|.+|++.+++ +.|++|+|.|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEE
Confidence 556666543 468999999999999 999999998 4589999999999999999998554 6899999999
Q ss_pred cCCCCC
Q 015069 326 GSKPTP 331 (413)
Q Consensus 326 a~~~~~ 331 (413)
++.+..
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987653
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=4.7e-13 Score=103.83 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=69.9
Q ss_pred CCceEEEcCCCc--cc---ChHHHHhhhccCCCeeeEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 015069 131 GHFNVFVGDLSP--EV---TDATLFACFSVFPTCSDARVMWDQK----TGRSRGFGFVSFRNQEDAQSAINDLNGKWLGN 201 (413)
Q Consensus 131 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~G~v~~~~i~~d~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 201 (413)
++++|+|.|+-. ++ .++||++.|++||.|.+++|++++. +++++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 22 3589999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 015069 202 RQIRCNWAA 210 (413)
Q Consensus 202 ~~i~v~~~~ 210 (413)
|.|.|.|..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5.7e-13 Score=122.32 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=69.7
Q ss_pred CCCcccEEEEec--CCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCee---CCe--eE
Q 015069 249 NNPQYTTVYVGN--LSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARIL---CGK--PI 321 (413)
Q Consensus 249 ~~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l---~gr--~l 321 (413)
...++++|||+| |++++|+++|+++|++| |.|.+|.+.++||||||+|.+.++|.+|++.|||.++ .|+ +|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 345668999999 57899999999999999 9999999999999999999999999999999999987 244 68
Q ss_pred EEEecCC
Q 015069 322 KCSWGSK 328 (413)
Q Consensus 322 ~V~~a~~ 328 (413)
.|.|+.+
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 8888853
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=1.4e-13 Score=104.71 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=63.8
Q ss_pred EcCCCcccChHHHHhhh------------ccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEE
Q 015069 137 VGDLSPEVTDATLFACF------------SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 204 (413)
Q Consensus 137 v~nl~~~~~~~~l~~~f------------~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i 204 (413)
+.||+..+++++|++.| ++||.|.+++|.+++ +++++|||||+|.+.++|.+|++.+||+.++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55777778877776666 999999999999885 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 015069 205 RCNWA 209 (413)
Q Consensus 205 ~v~~~ 209 (413)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=9.1e-13 Score=102.20 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.3
Q ss_pred cccEEEEecCCC--CC---CHHHHHHHhhccCccceEEEEeecc----------ccEEEEEeCCHHHHHHHHHHhCCCee
Q 015069 252 QYTTVYVGNLSS--EV---TSVDLHRHFHALCVGTIEDVRVQRD----------KGFGFVRYSTHPEAALAIQMGNARIL 316 (413)
Q Consensus 252 ~~~~l~V~nLp~--~~---t~e~L~~~F~~~~~G~i~~v~~~~~----------kg~afV~f~~~~~A~~A~~~l~g~~l 316 (413)
++++|+|.|+-. .+ .+++|++.|++| |.|.+|+|+++ +|++||+|.+.++|.+|++.|||+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 458899999942 22 368999999999 99999999865 38999999999999999999999999
Q ss_pred CCeeEEEEecC
Q 015069 317 CGKPIKCSWGS 327 (413)
Q Consensus 317 ~gr~l~V~~a~ 327 (413)
+||.|+|.|..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999874
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-12 Score=95.70 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCeEEEcCCC-------ccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 46 TCRSVYVGNIH-------PQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 46 ~~~tv~V~nLp-------~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..++|.|.-.+ .++++++|+++|++||+|.+|.|+ .+.+|||||+|.+.++|..|++.+ ..+.|++|+|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKIS 85 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEE
Confidence 35677777655 458999999999999999999987 467899999999999999999864 44689999999
Q ss_pred ecccCCCC
Q 015069 119 WAYASSQR 126 (413)
Q Consensus 119 ~~~~~~~~ 126 (413)
|+.++...
T Consensus 86 ~a~~~~~~ 93 (100)
T 2d9o_A 86 WLEGQPQD 93 (100)
T ss_dssp CSSCCCCC
T ss_pred EccCCCCC
Confidence 98766543
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.8e-13 Score=104.07 Aligned_cols=67 Identities=25% Similarity=0.474 Sum_probs=59.3
Q ss_pred EecCCCCCCHHHHHHHh------------hccCccceEEEEeecc-----ccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 015069 258 VGNLSSEVTSVDLHRHF------------HALCVGTIEDVRVQRD-----KGFGFVRYSTHPEAALAIQMGNARILCGKP 320 (413)
Q Consensus 258 V~nLp~~~t~e~L~~~F------------~~~~~G~i~~v~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~l~gr~ 320 (413)
+.||+..+++++|++.| ++| |.|.+|++.++ +|+|||+|.+.++|.+|++.|||+.++||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~--G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY--GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccC--CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777777777666 999 99999999876 799999999999999999999999999999
Q ss_pred EEEEec
Q 015069 321 IKCSWG 326 (413)
Q Consensus 321 l~V~~a 326 (413)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.4e-12 Score=100.35 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=65.2
Q ss_pred cccEEEEecCCCCC----------CHHHHHHHhhccCccceEEEEeecc--ccEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 015069 252 QYTTVYVGNLSSEV----------TSVDLHRHFHALCVGTIEDVRVQRD--KGFGFVRYSTHPEAALAIQMGNARILCGK 319 (413)
Q Consensus 252 ~~~~l~V~nLp~~~----------t~e~L~~~F~~~~~G~i~~v~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~l~gr 319 (413)
++++|.|.|+-..- .+++|++.|++| |.|.+|.+.++ +|++||+|.+.++|.+|++.|||+.|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999984321 236899999999 99999999887 79999999999999999999999999999
Q ss_pred eEEEEecC
Q 015069 320 PIKCSWGS 327 (413)
Q Consensus 320 ~l~V~~a~ 327 (413)
.|+|.|..
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.1e-12 Score=99.40 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCccC----------CHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 45 STCRSVYVGNIHPQV----------TNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~----------te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
.+++.|.|.|+=..- -++||++.|++||.|.+|.|.++..+|++||+|.+.++|.+|++.|||..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457889999975432 2457899999999999999988777899999999999999999999999999999
Q ss_pred eEEEeccc
Q 015069 115 IKVNWAYA 122 (413)
Q Consensus 115 l~v~~~~~ 122 (413)
|.|.|+..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999853
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=4.3e-12 Score=116.49 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcC--CCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCccc---Cc--ce
Q 015069 43 DASTCRSVYVGN--IHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIF---GQ--PI 115 (413)
Q Consensus 43 ~~~~~~tv~V~n--Lp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~---g~--~l 115 (413)
...++++|||+| |++.+||++|+++|++||+|.+|.+.. ++|||||+|.+.++|.+|++.|||..+. |+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 356788999999 588999999999999999999887754 6789999999999999999999999874 44 67
Q ss_pred EEEecc
Q 015069 116 KVNWAY 121 (413)
Q Consensus 116 ~v~~~~ 121 (413)
.|.|..
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888763
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=87.59 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCcccEEEEecCC----CCCCH----HHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCee
Q 015069 249 NNPQYTTVYVGNLS----SEVTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKP 320 (413)
Q Consensus 249 ~~~~~~~l~V~nLp----~~~t~----e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~ 320 (413)
.+|+.-+|+|.-.+ .++-+ .+|.+.|..| |.|..+++..++ +||+|.+.++|.+|++ |||..++||.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 34566789888876 23434 6799999999 999999999986 8999999999999998 9999999999
Q ss_pred EEEEecCCC
Q 015069 321 IKCSWGSKP 329 (413)
Q Consensus 321 l~V~~a~~~ 329 (413)
|+|.++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998753
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=7.2e-11 Score=90.75 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=69.6
Q ss_pred CCCCcccEEEEecCCCC-CCHHHHHHHhhccCccceEEEEeeccccEEEEEeCC-HHHHHHHHHHhC--CCeeCCeeEEE
Q 015069 248 ENNPQYTTVYVGNLSSE-VTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYST-HPEAALAIQMGN--ARILCGKPIKC 323 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~-~~~A~~A~~~l~--g~~l~gr~l~V 323 (413)
...++...|+|+||+.. +++++|+++|+.| |.|.+|.+.++...|||+|.+ .++|..|++.|| +..|.|..+++
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 44556689999999999 9999999999999 999999999999999999999 899999999995 67899988888
Q ss_pred Eec
Q 015069 324 SWG 326 (413)
Q Consensus 324 ~~a 326 (413)
..-
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.3e-10 Score=83.68 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCcccEEEEecCCCC-----CCH----HHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 248 ENNPQYTTVYVGNLSSE-----VTS----VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 248 ~~~~~~~~l~V~nLp~~-----~t~----e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
..+|+.-||+|.-++.. +-+ .+|.+.|..| |.|..+++..++ +||+|.+.++|.+|++ |||..++|
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 45567789999988732 333 5699999999 999999999997 9999999999999998 99999999
Q ss_pred eeEEEEecC
Q 015069 319 KPIKCSWGS 327 (413)
Q Consensus 319 r~l~V~~a~ 327 (413)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998864
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.6e-10 Score=81.88 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred CCCCCeEEEcCCCc----cCCH----HHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcce
Q 015069 44 ASTCRSVYVGNIHP----QVTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPI 115 (413)
Q Consensus 44 ~~~~~tv~V~nLp~----~~te----~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l 115 (413)
.++-.||+|.-.|. ++-. .+|.+.|.+||+|..++++.++ +||+|.+.++|..|++ |||..+.||.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 34456899888772 3433 6788999999999999998866 8999999999999998 99999999999
Q ss_pred EEEecccCC
Q 015069 116 KVNWAYASS 124 (413)
Q Consensus 116 ~v~~~~~~~ 124 (413)
+|++.+++-
T Consensus 79 kV~lkt~dW 87 (91)
T 2dnr_A 79 TIALKSPSG 87 (91)
T ss_dssp EEEECCCSS
T ss_pred EEEeCCCCc
Confidence 999987654
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.3e-10 Score=85.94 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCcc-CCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcC-HHHHHHHHHHhC--CCcccCcceEEE
Q 015069 43 DASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFD-RRSAALAIVTLN--GRHIFGQPIKVN 118 (413)
Q Consensus 43 ~~~~~~tv~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~-~~~A~~A~~~l~--~~~i~g~~l~v~ 118 (413)
.-...+.|+|+||+.+ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|..|++.++ +..|.|..+.++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 3455788999999999 99999999999999999999987766 79999999 899999999985 678899888887
Q ss_pred ecc
Q 015069 119 WAY 121 (413)
Q Consensus 119 ~~~ 121 (413)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.2e-09 Score=78.79 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCcc-----CCH----HHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcc
Q 015069 44 ASTCRSVYVGNIHPQ-----VTN----ALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP 114 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~-----~te----~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~ 114 (413)
.++-.||+|.-++.+ +-. .+|.+.|..||+|..|+++.++ +||+|.+.++|.+|++ |||..+.||.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 345679999988742 333 5688999999999999998876 9999999999999998 9999999999
Q ss_pred eEEEecc
Q 015069 115 IKVNWAY 121 (413)
Q Consensus 115 l~v~~~~ 121 (413)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=5.8e-09 Score=90.94 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=59.9
Q ss_pred ChHHHHhhhccCCCeeeEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 015069 145 TDATLFACFSVFPTCSDARVMWDQ----KTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 210 (413)
Q Consensus 145 ~~~~l~~~f~~~G~v~~~~i~~d~----~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v~~~~ 210 (413)
.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|++.|+|+.++||.|.+.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999998654 445899999999999999999999999999999999999874
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=1.4e-08 Score=88.45 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCHHHHHHHhhccCccceEEEEee----------ccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 265 VTSVDLHRHFHALCVGTIEDVRVQ----------RDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 265 ~t~e~L~~~F~~~~~G~i~~v~~~----------~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
-.+++|++.|++| |.|.++.+. +.+|++||+|.+.++|.+|++.|||+.++||.|.|.|..
T Consensus 141 e~~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3578999999999 999999997 336899999999999999999999999999999999874
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=7.1e-08 Score=70.78 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=66.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcc---CccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEE
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHAL---CVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCS 324 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~---~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~ 324 (413)
++|-+-|||..+++..|+.+++++ ..|.|+.+.+..|.+-|+|+|.|...|.+|.-.|||.+|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 679999999999999999999988 34689999999999999999999999999999999999999999995
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=9.1e-07 Score=64.53 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=69.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhc---cCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHA---LCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~---~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
.++|.|.|||..++++.|.-+|++ -|.|.|.++.... +-|+|+|.+.+.|++.++. ..+.|.|.+|.|.-..+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 478999999999999999999998 3669999999987 6899999999999999874 578899999999766555
Q ss_pred CCCCCCCCCCCC
Q 015069 330 TPPGTSSTPLPP 341 (413)
Q Consensus 330 ~~~~~~~~~~~~ 341 (413)
.+..---...++
T Consensus 85 ~~~r~ll~gl~~ 96 (104)
T 2dhx_A 85 APARLLLQGLPP 96 (104)
T ss_dssp CCCCCCCCSCCC
T ss_pred CcceEeeecCCC
Confidence 444333333333
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=4.2e-07 Score=66.27 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCccCCHHHHHHHHhc---c--CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 44 ASTCRSVYVGNIHPQVTNALLQEVFSS---T--GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 44 ~~~~~tv~V~nLp~~~te~~l~~~f~~---~--G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
.+-.++|.|.|||.+++++.|.-+|+. - |+|.+|.... +-|+|+|.+.+.|.+.++ ...+.|.+.+|.|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 345678999999999999999999997 2 4888887754 589999999999999996 45788999999998
Q ss_pred ecccCCCCCCCCCCceEEEcCCCcccC
Q 015069 119 WAYASSQREDTSGHFNVFVGDLSPEVT 145 (413)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~v~nl~~~~~ 145 (413)
...+.. ..+|++.+|++.++
T Consensus 80 P~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCCC-------CCCCCCCSCCCCCC
T ss_pred cCCCCC-------cceEeeecCCCCCC
Confidence 765443 45799999998775
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.4e-07 Score=67.21 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhcc-----CCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSST-----GPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~-----G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..++|-|-|||..+++..|+.+.+++ |.++.+.+..+. +=|+|+|.+...|-+|...|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 999988776654 489999999999999999999999999998886
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=2.2e-06 Score=62.88 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=65.0
Q ss_pred cEEEEecCCCCC-C----HHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q 015069 254 TTVYVGNLSSEV-T----SVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSK 328 (413)
Q Consensus 254 ~~l~V~nLp~~~-t----~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~ 328 (413)
++|+|.||+..+ . .+.++++|..| +++......++=.-..|.|.+.++|.+|...||+..|.|+.|+|-|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~--~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTY--DKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTT--CSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhh--CcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 679999998866 2 25779999999 8999999999855678999999999999999999999999999999974
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.99 E-value=3.3e-05 Score=55.58 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=46.1
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~ 106 (413)
+.++| ++|.++...||.++|+.||.|. |+++.|- .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999664 7777665 69999999999999998664
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00012 Score=52.80 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
.+|.|++||+++|++++.+.++.. ..+........ -.-|+|.|.+.++...-.+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999 78877777543 2569999999999999999999998743
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00033 Score=51.35 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=62.9
Q ss_pred CceEEEcCCCccc-Ch----HHHHhhhccCCCeeeEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCeEEEE
Q 015069 132 HFNVFVGDLSPEV-TD----ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRC 206 (413)
Q Consensus 132 ~~~l~v~nl~~~~-~~----~~l~~~f~~~G~v~~~~i~~d~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g~~i~v 206 (413)
.++|+|.||+.++ .. +.++++|..|+++.....+++ -+-..|.|.+.++|.+|...|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3579999999866 32 467899999999998888844 335899999999999999999999999999999
Q ss_pred EEccC
Q 015069 207 NWAAK 211 (413)
Q Consensus 207 ~~~~~ 211 (413)
-++..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99863
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00018 Score=51.89 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=55.3
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC------CceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK------SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~------~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
++|.|++||+.+||+++.+.+..+..+.....+..+. -.-|||.|.+.+++....+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999988776666665542 2369999999999999999999998764
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00049 Score=51.97 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=61.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCC-eeEEEEecC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCG-KPIKCSWGS 327 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~g-r~l~V~~a~ 327 (413)
.+.|.|.+.|... ...|...|+.| |+|.+........+..|.|.+..+|++|+.. ||..|+| ..|-|..+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~--G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQY--GNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTT--SCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhh--CcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4779999999885 67888999999 9999999866678999999999999999987 9999985 778887764
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.47 E-value=9.7e-05 Score=53.33 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=45.0
Q ss_pred EEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhC
Q 015069 50 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLN 106 (413)
Q Consensus 50 v~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~ 106 (413)
++| ++|.++...||.++|+.||.| .|.++.+- .|||.|.+++.|..|+..+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 455 999999999999999999955 47777665 69999999999999998765
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00055 Score=51.69 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccC-cceEEEecc
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFG-QPIKVNWAY 121 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g-~~l~v~~~~ 121 (413)
...+.|.|.+.|.. ....|...|++||+|.+... ....++-.|.|.+..+|.+||. .||..|.| --|-|.++.
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 34677999999988 47889999999999987765 4456799999999999999996 89999985 557777654
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.10 E-value=0.0026 Score=45.82 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=43.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 312 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~ 312 (413)
+.++| +.|..+...||.++|+.| |.| .|+.+.| -.|||.|.+++.|..|++.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~f--ggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAF--GNI-QISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTT--CSC-CCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhcc--CCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 45556 999999999999999999 522 3444444 589999999999999999763
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.00059 Score=49.47 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=51.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecc--------ccEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD--------KGFGFVRYSTHPEAALAIQMGNARILCG 318 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~--------kg~afV~f~~~~~A~~A~~~l~g~~l~g 318 (413)
-+|.|+.||+.+||+++.+.+++. -.+.....+.. -.-|+|.|.+.++...-.+.++|..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCC--SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCc--CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 569999999999999999999887 55544444322 2468999999999999999999998743
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.85 E-value=0.00089 Score=48.53 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCC------CceEEEEEcCHHHHHHHHHHhCCCcccC
Q 015069 46 TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDK------SSYGFVDYFDRRSAALAIVTLNGRHIFG 112 (413)
Q Consensus 46 ~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~------~g~afV~F~~~~~A~~A~~~l~~~~i~g 112 (413)
.+-+|.|+.||+.+||+++.+.+..+-++.....+..+. -.-|||.|.+.++.....+..+|..|-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356799999999999999887777654332222222211 2358999999999999999999988764
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.70 E-value=0.0021 Score=49.15 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcce-EEEEe------------c-----CCCceEEEEEcCHHHHHHHHHHhCCC
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEG-CKLIK------------K-----DKSSYGFVDYFDRRSAALAIVTLNGR 108 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~-v~i~~------------~-----~~~g~afV~F~~~~~A~~A~~~l~~~ 108 (413)
...|.|-|.|.+ ....+.+.|++||.|.+ +...+ . ...++-.|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456889999865 56778889999998775 22111 0 024689999999999999996 8999
Q ss_pred cccCcceEEEeccc
Q 015069 109 HIFGQPIKVNWAYA 122 (413)
Q Consensus 109 ~i~g~~l~v~~~~~ 122 (413)
.|.|.-|-|.++.+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998888887643
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.66 E-value=0.00098 Score=63.25 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=41.2
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHH
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIV 103 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~ 103 (413)
|+|+|. .|..+++.+|.++|++||+|.++.+-+++ +-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 889997 79999999999999999999988775432 3599999999999997764
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0035 Score=45.28 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=44.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGN 312 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~ 312 (413)
+.++| +.|..+...||.++|++| | =..|+++.| -.|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~f--g-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAF--G-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTS--E-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhcc--C-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999 7 334555555 589999999999999999764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.63 E-value=0.0025 Score=48.73 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=56.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEE-EEeec-------------------cccEEEEEeCCHHHHHHHHHHhCC
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIED-VRVQR-------------------DKGFGFVRYSTHPEAALAIQMGNA 313 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~-v~~~~-------------------~kg~afV~f~~~~~A~~A~~~l~g 313 (413)
..|.|.+.|...+ ..+.+.|+.| |.|.+ +...+ ...+..|+|++..+|.+|+.. ||
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~--G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEF--GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGG--SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhh--ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 4588889976654 4677889999 88877 22211 256789999999999999987 99
Q ss_pred CeeCCeeEEEEecCC
Q 015069 314 RILCGKPIKCSWGSK 328 (413)
Q Consensus 314 ~~l~gr~l~V~~a~~ 328 (413)
..|.|.-|-|...++
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887753
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.82 E-value=0.0054 Score=58.23 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=42.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeecccc-EEEEEeCCHHHHHHHHHH
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-FGFVRYSTHPEAALAIQM 310 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg-~afV~f~~~~~A~~A~~~ 310 (413)
++|+|. .|..+++.+|.++|+.| |+|.++.+.+++| ||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~--g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQF--GPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGG--SCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhc--CCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 789997 79999999999999999 9999999999876 899999999998877543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.40 E-value=0.74 Score=44.53 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=44.7
Q ss_pred CeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCC
Q 015069 48 RSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNG 107 (413)
Q Consensus 48 ~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~ 107 (413)
..++|+ +|..+...+|.+.|+.||.| +|.++.+ ..|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 445554 99999999999999999965 4555433 4799999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.23 E-value=3.9 Score=39.47 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=45.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCC
Q 015069 253 YTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNA 313 (413)
Q Consensus 253 ~~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g 313 (413)
...++|+ +|..+...+|.+.|+.| |. .+|+++.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f--g~-v~V~widd-t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF--GN-IQISWIDD-TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG--CC-CEEEECSS-SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc--CC-EEEEEEcC-CeEEEEECCHHHHHHHHHHHHh
Confidence 4566665 99999999999999999 74 35555544 5799999999999999998753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.89 E-value=7 Score=26.44 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCCHHHHHHHhhccC---ccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q 015069 264 EVTSVDLHRHFHALC---VGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGS 327 (413)
Q Consensus 264 ~~t~e~L~~~F~~~~---~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~ 327 (413)
.++..+|..++..-+ ...|-.+++..+ +.||+-.. +.+..+++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 566677777776541 135666777655 88998865 56788899999999999999998764
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.11 E-value=13 Score=24.98 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHhccCCcc-----eEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEEec
Q 015069 58 QVTNALLQEVFSSTGPLE-----GCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA 120 (413)
Q Consensus 58 ~~te~~l~~~f~~~G~v~-----~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~~~ 120 (413)
.+...+|..++..-+.|. .+.+ ...|.||+-.. +.+..++..|++..+.|+.+.|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 367778888877655433 3444 33489999765 5688999999999999999999865
No 405
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=52.31 E-value=48 Score=23.71 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=47.6
Q ss_pred EecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q 015069 258 VGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMGNARILCGKPIKCSWGSKP 329 (413)
Q Consensus 258 V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l~g~~l~gr~l~V~~a~~~ 329 (413)
|-.++..+.-++|..-....+ |.-.+++...+ ...|-..+.+|-.+|++.|+.. ..-+.|+|-+..++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~f-Gq~ldL~y~n~--EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAF-GQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHH-SSCEEEEECSS--SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHh-CCeeeEEEecc--eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 335678888888887776543 77777777633 5789999999999999987665 33345555444443
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.69 E-value=36 Score=27.22 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=33.5
Q ss_pred EEEEecCCC-C--------CCHHHHHHHh--hccCccceEEEEeecc-ccEEEEEeCCH-HHHHHHHH
Q 015069 255 TVYVGNLSS-E--------VTSVDLHRHF--HALCVGTIEDVRVQRD-KGFGFVRYSTH-PEAALAIQ 309 (413)
Q Consensus 255 ~l~V~nLp~-~--------~t~e~L~~~F--~~~~~G~i~~v~~~~~-kg~afV~f~~~-~~A~~A~~ 309 (413)
.+.|-|+|. . .+..+|++.| +.|++..|..+.-... +|++.|.|... ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 466778886 2 3447899977 8994333333332232 68899999853 44444443
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.83 E-value=31 Score=27.56 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=36.5
Q ss_pred eEEEcCCCcc---------CCHHHHHHHH--hccCCcceEEEEecC--CCceEEEEEcCHHHH-HHHH
Q 015069 49 SVYVGNIHPQ---------VTNALLQEVF--SSTGPLEGCKLIKKD--KSSYGFVDYFDRRSA-ALAI 102 (413)
Q Consensus 49 tv~V~nLp~~---------~te~~l~~~f--~~~G~v~~v~i~~~~--~~g~afV~F~~~~~A-~~A~ 102 (413)
++.|-|+|.. ....+|++.| +.|.++. |+.+.+. ..|+|.|+|.+--.- ..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHH
Confidence 5778888872 3447899977 8998876 5555543 368999999875443 3344
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.88 E-value=96 Score=21.49 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHHhCCCcccCcceEEE
Q 015069 45 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVN 118 (413)
Q Consensus 45 ~~~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~l~~~~i~g~~l~v~ 118 (413)
..++-|.|-|+|..+-..++.-.....|--..|.. -.|.|.+.|.+.++-..|+..|-++. +..+.++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdy----idgqamirfqnsdeqrlaiqkllnhn--nnklqie 77 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY----IDGQAMIRFQNSDEQRLAIQKLLNHN--NNKLQIE 77 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE----CSSCEEEEESSHHHHHHHHHHHEETT--TTEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee----ecCeeEEEecCChHHHHHHHHHHhcC--CCEEEEE
Confidence 45678999999999999998888887774333333 45789999999999999998764432 3344444
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=34.44 E-value=1.1e+02 Score=21.10 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=43.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeCCHHHHHHHHHHh
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEAALAIQMG 311 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~~~~~A~~A~~~l 311 (413)
+-|.|-|+|..+-..++.-...-. |---.|... .|.|.|.|.+.++-.-|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhl--gyefycdyi--dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHL--GYEFYCDYI--DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTT--CCCEEEEEC--SSCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhc--CeeEeeeee--cCeeEEEecCChHHHHHHHHH
Confidence 567899999999888877777766 665666554 368999999999999998866
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=31.22 E-value=1.1e+02 Score=19.71 Aligned_cols=55 Identities=7% Similarity=-0.102 Sum_probs=42.7
Q ss_pred CCeEEEcCCCccCCHHHHHHHHhccCCcceEEEEecCCCceEEEEEcCHHHHHHHHHH
Q 015069 47 CRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVT 104 (413)
Q Consensus 47 ~~tv~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~afV~F~~~~~A~~A~~~ 104 (413)
..++.|.|+...--...|.+.++. ..|..+.+ +-..+.+.|.|.+.++...+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v--~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKV--DLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEE--CSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEE--EccCCEEEEEECCHHHHHHHHHH
Confidence 356899999988888999999999 87887777 33445788888866777777764
No 411
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.56 E-value=85 Score=19.68 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=42.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeC---CHHHHHHHHHH
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS---THPEAALAIQM 310 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~---~~~~A~~A~~~ 310 (413)
.++.|.++.-.-....+...+... ..|..+.+....+.+.|.|. +.++-.++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKV--PGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTS--TTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcC--CCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 457888888777788899999998 78999988888888899984 34555566655
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.78 E-value=1.6e+02 Score=20.54 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.4
Q ss_pred ceEEEEeecc-ccEEEEEeCCHHHHHHHHHHhCCC
Q 015069 281 TIEDVRVQRD-KGFGFVRYSTHPEAALAIQMGNAR 314 (413)
Q Consensus 281 ~i~~v~~~~~-kg~afV~f~~~~~A~~A~~~l~g~ 314 (413)
.|.++.+... +||.||++...++...+++.+.|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3667766654 899999999999999998877664
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.68 E-value=21 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=18.4
Q ss_pred HHHHHHhhccCccceEEEEeeccccEEEEEeC
Q 015069 268 VDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS 299 (413)
Q Consensus 268 e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~ 299 (413)
+|+.++|... |.|+.+. .+|||+||+-.
T Consensus 2 ~~~~~l~~~~--G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA--GICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE--EEEEEEE--TTTTEEEEEEE
T ss_pred Ccccccccce--eEEEEEE--CCCCeeEEeeC
Confidence 4566778877 8888664 35789999875
No 414
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.96 E-value=1.4e+02 Score=18.99 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=44.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhccCccceEEEEeeccccEEEEEeC----CHHHHHHHHHH
Q 015069 254 TTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYS----THPEAALAIQM 310 (413)
Q Consensus 254 ~~l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~kg~afV~f~----~~~~A~~A~~~ 310 (413)
.++.|.++.-.--...+...+... ..|..+.+....+.+.|.|. +.++-..+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~--~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNV--NGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTS--TTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcC--CCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457888888777788899999998 78888888877888999995 45666777776
No 415
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.29 E-value=1.5e+02 Score=20.48 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=40.9
Q ss_pred EEEecCCCCCCHHHHHHHhhccCccceEEEEeecc---ccEEEEEeCCHHHHHHHHHH
Q 015069 256 VYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD---KGFGFVRYSTHPEAALAIQM 310 (413)
Q Consensus 256 l~V~nLp~~~t~e~L~~~F~~~~~G~i~~v~~~~~---kg~afV~f~~~~~A~~A~~~ 310 (413)
-++..++...+..+|++.++....-.|..|..+.- ..-|+|++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 56667889999999999998753357888776532 34599999887777765554
No 416
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.57 E-value=37 Score=24.34 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCccCCHHHHHHHHh
Q 015069 35 SGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFS 69 (413)
Q Consensus 35 ~~~~~~~~~~~~~~tv~V~nLp~~~te~~l~~~f~ 69 (413)
++..|++....+.++|+|..-|..+++++|.+.+.
T Consensus 3 ~~~~~pp~~~~e~~rl~ip~DP~~Ws~~~V~~WL~ 37 (98)
T 1x66_A 3 SGSSGPPNMTTNERRVIVPADPTLWTQEHVRQWLE 37 (98)
T ss_dssp SCCCCCCCCCCSSSCCCCCSSGGGCCTTHHHHHHH
T ss_pred CCCCCCCCccccceecCCCCChhhcCHHHHHHHHH
Confidence 34445556667788899999999999999998665
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=69 Score=20.92 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=14.3
Q ss_pred cceEEEEeeccccEEEEEeCC
Q 015069 280 GTIEDVRVQRDKGFGFVRYST 300 (413)
Q Consensus 280 G~i~~v~~~~~kg~afV~f~~ 300 (413)
|+|..|. ..++.|||.|.|
T Consensus 28 GtV~kV~--~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFED 46 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred eEEEEEe--cCCcEEEEEEcc
Confidence 6777664 456789999986
No 418
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.29 E-value=57 Score=16.42 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=11.3
Q ss_pred CCHHHHHHHHhccC
Q 015069 59 VTNALLQEVFSSTG 72 (413)
Q Consensus 59 ~te~~l~~~f~~~G 72 (413)
-+|.+|++|.++|-
T Consensus 13 rnekelrdfiekfk 26 (28)
T 1fme_A 13 RNEKELRDFIEKFK 26 (28)
T ss_dssp CCHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHhc
Confidence 46899999998873
Done!