Query 015070
Match_columns 413
No_of_seqs 231 out of 877
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 06:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 86.1 3.7 0.00027 34.8 11.9 116 70-200 1-123 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 59.6 13 0.00098 29.6 7.8 101 71-191 4-108 (265)
3 d1xhba2 c.68.1.17 (A:95-422) P 45.9 85 0.0062 26.7 11.7 109 68-191 20-134 (328)
4 d1iioa_ a.39.4.1 (A:) Hypothet 26.5 9.2 0.00067 28.1 0.9 19 171-189 60-78 (84)
5 d1iioa_ a.39.4.1 (A:) Hypothet 26.0 9.7 0.00071 28.0 0.9 17 173-189 21-37 (84)
6 d3beda1 c.54.1.1 (A:1-132) PTS 25.3 84 0.0061 24.1 6.8 95 70-180 1-97 (132)
7 d1jsda_ b.19.1.2 (A:) Hemagglu 18.8 25 0.0018 31.8 2.3 44 163-207 73-122 (317)
8 d1j20a1 c.26.2.1 (A:1-165) Arg 18.2 40 0.0029 24.9 3.3 39 70-110 1-39 (165)
9 d2bgka1 c.2.1.2 (A:11-278) Rhi 17.3 93 0.0068 26.2 6.0 9 365-373 248-256 (268)
10 d1zk4a1 c.2.1.2 (A:1-251) R-sp 15.6 1.1E+02 0.008 25.5 6.0 33 76-109 34-66 (251)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=86.11 E-value=3.7 Score=34.80 Aligned_cols=116 Identities=6% Similarity=0.049 Sum_probs=67.5
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee---e
Q 015070 70 PRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT---Y 143 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~---w 143 (413)
|++..+|.++++ ...|++.|+.+- .++..++| +|-.|++...+.++++.+ -.+|+++....... -
T Consensus 1 P~vSiiip~yN~-~~~l~~~l~Si~~Qt~~~~eiiv-vdd~S~d~t~~~l~~~~~-------~~~i~~~~~~~~~~~~~~ 71 (255)
T d1qg8a_ 1 PKVSVIMTSYNK-SDYVAKSISSILSQTFSDFELFI-MDDNSNEETLNVIRPFLN-------DNRVRFYQSDISGVKERT 71 (255)
T ss_dssp CCEEEEEEESSC-TTTHHHHHHHHHTCSCCCEEEEE-EECSCCHHHHHHHGGGGG-------STTEEEEECCCCSHHHHH
T ss_pred CEEEEEEecCCC-HHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHhhh-------hccccccccccccccccc
Confidence 689999999984 678999888873 34445555 455566776666665432 34566654332110 0
Q ss_pred cCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhccCCCcceEE
Q 015070 144 RGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSGLSRKLNFIE 200 (413)
Q Consensus 144 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~~~~~~nFIe 200 (413)
...+.-.|-=.|++.+ +-||++.|-+.|++..+ .+.+..+|.. +.+..++-
T Consensus 72 ~~~g~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v~ 123 (255)
T d1qg8a_ 72 EKTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVIY 123 (255)
T ss_dssp SSCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEEE
T ss_pred ccchhccccccccccc-----ccccccccccccccccchHHHHHHHHHh-CCCCCeEe
Confidence 1222222222222222 35899999999999755 4455566644 34556653
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.59 E-value=13 Score=29.59 Aligned_cols=101 Identities=8% Similarity=0.003 Sum_probs=58.2
Q ss_pred cEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCcc
Q 015070 71 RFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPT 147 (413)
Q Consensus 71 kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S 147 (413)
++..+|.+|+ ..+.|+++|+.|- ++ +..+|..|..+++.. ++++.... ..+.+.+..+ .++|.+
T Consensus 4 ~~tvii~tyn-~~~~l~~~l~sl~~q~~~-~~~iiV~d~~sd~~~-~~i~~~~~------~~~~~~~~~~----~~~g~~ 70 (265)
T d1omza_ 4 SFTLIMQTYN-RTDLLLRLLNHYQAVPSL-HKVIVVWNNVGEKGP-EELWNSLG------PHPIPVIFKP----QTANKM 70 (265)
T ss_dssp CEEEEEEESS-CHHHHHHHHHHHTTSTTE-EEEEEEECCTTCCCT-HHHHHHTC------CCSSCEEEEE----CSSCCG
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHcCCCc-CeEEEEECCCCCccH-HHHHHHhc------ccceEEEEec----CCCCch
Confidence 6788999998 6999999999994 34 356677776655443 33333221 2222333222 234443
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhc
Q 015070 148 MVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSG 191 (413)
Q Consensus 148 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~ 191 (413)
. |-- .+++. .+=||++.|-+.|.+-.. .+.+...+.+
T Consensus 71 ~--a~n----~~~~~-a~ge~i~~lD~D~~~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 71 R--NRL----QVFPE-VETNAVLMVDDDTLISAQDLVFAFSIWQQ 108 (265)
T ss_dssp G--GGG----SCCTT-CCSSEEEEECTTEEECHHHHHHHHHHHTT
T ss_pred h--hhh----hhHHh-CCcCEEEEeCcccCCCHHHHHHHHHHHHh
Confidence 2 111 22322 245899999999888553 4445555543
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.94 E-value=85 Score=26.74 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=64.8
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHHHc--CC-CCe-EEEEEcCCCChH-HHHHHHhhhccCCCcccccceEeeCccceee
Q 015070 68 KIPRFAYLVSGSKGDLEKLWRTLQALY--HP-RNR-YVLHLDLEAPTE-ERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 (413)
Q Consensus 68 ~~~kiAYLI~~hk~d~~~l~RLL~aLy--~p-~n~-y~IHlD~ks~~~-~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~ 142 (413)
..|.+..+|-+|....+.|.|+|+.+- .| ... =+|-||-.|++. .+..+..+++. ..++|+++...
T Consensus 20 ~~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~-----~~~~i~vi~~~---- 90 (328)
T d1xhba2 20 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKK-----LKVPVHVIRME---- 90 (328)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHS-----SSSCEEEEECS----
T ss_pred CCCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHh-----cCCCeEEEEec----
Confidence 357889999999732456899998873 22 322 267788766544 23444444432 24578877532
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhc
Q 015070 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSG 191 (413)
Q Consensus 143 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~ 191 (413)
...+...|--.|++.+ .=+|++.|-+.|.+-.. .+.+...|.+
T Consensus 91 -~n~G~~~a~N~Gi~~a-----~gd~i~flD~D~~~~p~~l~~l~~~~~~ 134 (328)
T d1xhba2 91 -QRSGLIRARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIKH 134 (328)
T ss_dssp -SCCCHHHHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHHH
T ss_pred -ccccchHHHHHHHHhh-----hcceeeecCcccccChhHHHHHHHHHhc
Confidence 1223334444444443 24799999999987544 3556666654
No 4
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.48 E-value=9.2 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.6
Q ss_pred eccCCcccccchhHHHHHH
Q 015070 171 NLSASDYPLVTQDDLLYTF 189 (413)
Q Consensus 171 ~LSgsDyPLkt~~~i~~~f 189 (413)
+|+++|||+++.+++.+.+
T Consensus 60 ~l~~~DFP~ksae~lad~i 78 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTI 78 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHH
Confidence 5678999999999998866
No 5
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.02 E-value=9.7 Score=27.98 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=14.9
Q ss_pred cCCcccccchhHHHHHH
Q 015070 173 SASDYPLVTQDDLLYTF 189 (413)
Q Consensus 173 SgsDyPLkt~~~i~~~f 189 (413)
.|.+||+.|++||...|
T Consensus 21 ~gA~FPI~s~~eL~~al 37 (84)
T d1iioa_ 21 AGADFPINSPEELMAAL 37 (84)
T ss_dssp TTSSSTTBHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHhC
Confidence 46899999999998876
No 6
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=25.31 E-value=84 Score=24.06 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=60.7
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcCC-CCeEEEEEcCCCCh-HHHHHHHhhhccCCCcccccceEeeCccceeeecCcc
Q 015070 70 PRFAYLVSGSKGDLEKLWRTLQALYHP-RNRYVLHLDLEAPT-EERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPT 147 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~p-~n~y~IHlD~ks~~-~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S 147 (413)
|+...+|.+|.+=..-+...++.+.-+ .|..+|.+....+. ..++++.+.++.. .-..|-|+.+ ...|.+.
T Consensus 1 Mk~kIii~sHG~~A~gl~~s~~~i~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~~----~~~~vliltD---l~GGTP~ 73 (132)
T d3beda1 1 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEA----GNVPTLVLAD---LKGGTPC 73 (132)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHH----CSCCEEEEES---STTSHHH
T ss_pred CCCCEEEEcCHHHHHHHHHHHHHHcCCcCCeEEEEcCCCCCHHHHHHHHHHHHhhC----CCCCEEEEEe---cccCChh
Confidence 567789999995567788888888744 57778888876554 4556666665421 1235666643 4445555
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEeccCCccccc
Q 015070 148 MVANTLHACAILLKNSKDWDWFINLSASDYPLV 180 (413)
Q Consensus 148 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLk 180 (413)
.+.+.+ +.. .+-+..+||-.+|+.
T Consensus 74 N~a~~~------~~~---~~~v~visG~NLpml 97 (132)
T d3beda1 74 NVAMMA------MGT---YPQLRVVAGLNLAMA 97 (132)
T ss_dssp HHHHHH------TTT---CTTEEEEESCCHHHH
T ss_pred HHHHHH------Hhc---CCCEEEEECCCHHHH
Confidence 554332 322 234788999999975
No 7
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=18.79 E-value=25 Score=31.83 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=34.2
Q ss_pred CCCCceEEecc----CCccc--ccchhHHHHHHhccCCCcceEEeecCCCC
Q 015070 163 SKDWDWFINLS----ASDYP--LVTQDDLLYTFSGLSRKLNFIEHTSHLGW 207 (413)
Q Consensus 163 ~~~wdyfi~LS----gsDyP--Lkt~~~i~~~f~~~~~~~nFIe~~~~~~w 207 (413)
...|||+|==+ |-||| +...++|.+.|++ .++.++|+..+...|
T Consensus 73 ~~~WsyivErp~a~ng~CYPg~~~d~eeLR~l~ss-~~~~Er~e~~~~~~w 122 (317)
T d1jsda_ 73 GREWSYIVERPSAVNGMCYPGNVENLEELRSLFSS-ASSYQRIQIFPDTIW 122 (317)
T ss_dssp CEECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHH-SSEEEEEESSCGGGC
T ss_pred cCceEEEEecCCcCCCcccccccCCHHHHHHHHhc-cCceeeEEecCcccc
Confidence 45799999764 67999 6778888888876 568999987765556
No 8
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=18.18 E-value=40 Score=24.94 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=31.4
Q ss_pred CcEEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCh
Q 015070 70 PRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPT 110 (413)
Q Consensus 70 ~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~ 110 (413)
||++-.++|.. |.-.+..+|+..+ ..+.+.+|+|.....
T Consensus 1 mKvlvA~SGG~-DS~vll~lL~e~~-~~~vi~~~~~~~~~~ 39 (165)
T d1j20a1 1 MKIVLAYSGGL-DTSIILKWLKETY-RAEVIAFTADIGQGE 39 (165)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHH-TCEEEEEEEESSCSS
T ss_pred CEEEEEEeCHH-HHHHHHHHHHHcC-CCEEEEEEeccCChH
Confidence 78999999988 8888888888765 467889999886653
No 9
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}
Probab=17.31 E-value=93 Score=26.21 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=5.4
Q ss_pred CCCccccCC
Q 015070 365 TPGAWCSGD 373 (413)
Q Consensus 365 ~~g~w~~~~ 373 (413)
+.|||....
T Consensus 248 VDGG~t~~~ 256 (268)
T d2bgka1 248 IDGGYTRTN 256 (268)
T ss_dssp ESTTGGGCC
T ss_pred ECcCcccCC
Confidence 577776443
No 10
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}
Probab=15.62 E-value=1.1e+02 Score=25.53 Aligned_cols=33 Identities=6% Similarity=0.022 Sum_probs=21.3
Q ss_pred EEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCC
Q 015070 76 VSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAP 109 (413)
Q Consensus 76 I~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~ 109 (413)
+++.. +.+.++.+.+.+..+++..+++.|....
T Consensus 34 ~~~~r-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 34 MITGR-HSDVGEKAAKSVGTPDQIQFFQHDSSDE 66 (251)
T ss_dssp EEEES-CHHHHHHHHHHHCCTTTEEEEECCTTCH
T ss_pred EEEEC-CHHHHHHHHHHhCCCCcEEEEEccCCCH
Confidence 34444 5677777777776666667777776543
Done!