Query 015072
Match_columns 413
No_of_seqs 248 out of 2765
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01377 soxA_mon sarcosine o 100.0 1E-48 2.2E-53 366.2 43.7 375 8-396 1-379 (380)
2 KOG2820 FAD-dependent oxidored 100.0 7.7E-49 1.7E-53 331.6 31.9 389 1-394 1-397 (399)
3 PRK11259 solA N-methyltryptoph 100.0 5.6E-46 1.2E-50 347.1 42.0 367 7-392 3-375 (376)
4 TIGR01373 soxB sarcosine oxida 100.0 1.9E-44 4E-49 339.6 38.3 366 6-396 29-404 (407)
5 PRK00711 D-amino acid dehydrog 100.0 1.3E-43 2.9E-48 335.4 33.6 358 9-391 2-416 (416)
6 PRK12409 D-amino acid dehydrog 100.0 2.4E-40 5.3E-45 312.0 33.6 348 8-378 2-408 (410)
7 PF01266 DAO: FAD dependent ox 100.0 5.1E-41 1.1E-45 312.2 26.4 345 9-372 1-358 (358)
8 PRK01747 mnmC bifunctional tRN 100.0 3.9E-40 8.5E-45 326.2 30.0 360 7-400 260-659 (662)
9 TIGR03329 Phn_aa_oxid putative 100.0 3.1E-39 6.7E-44 307.3 32.5 349 6-377 23-395 (460)
10 COG0665 DadA Glycine/D-amino a 100.0 1.7E-38 3.8E-43 298.0 35.8 366 5-393 2-383 (387)
11 KOG2853 Possible oxidoreductas 100.0 2.4E-38 5.1E-43 268.0 27.2 370 7-395 86-501 (509)
12 KOG2844 Dimethylglycine dehydr 100.0 3.4E-37 7.3E-42 281.9 29.3 371 6-398 38-422 (856)
13 TIGR03364 HpnW_proposed FAD de 100.0 1.4E-36 3E-41 282.3 33.2 335 8-367 1-364 (365)
14 TIGR03197 MnmC_Cterm tRNA U-34 100.0 2.1E-36 4.6E-41 282.1 28.0 337 22-392 1-380 (381)
15 TIGR02352 thiamin_ThiO glycine 100.0 1.7E-35 3.8E-40 272.6 29.3 325 24-376 1-336 (337)
16 PRK11728 hydroxyglutarate oxid 100.0 1.9E-33 4.1E-38 263.2 31.6 347 7-373 2-393 (393)
17 PRK11101 glpA sn-glycerol-3-ph 100.0 9.6E-31 2.1E-35 252.7 35.4 340 6-376 5-370 (546)
18 COG0579 Predicted dehydrogenas 100.0 2.4E-28 5.3E-33 221.9 30.7 353 6-375 2-374 (429)
19 PRK13369 glycerol-3-phosphate 100.0 2.2E-28 4.8E-33 234.8 32.2 348 4-376 3-377 (502)
20 PLN02464 glycerol-3-phosphate 100.0 3.5E-28 7.7E-33 237.2 33.0 351 5-375 69-453 (627)
21 PRK12266 glpD glycerol-3-phosp 100.0 1.3E-27 2.8E-32 229.2 34.9 350 1-376 1-378 (508)
22 KOG2852 Possible oxidoreductas 100.0 7.2E-29 1.6E-33 205.9 21.7 350 4-393 7-380 (380)
23 COG0578 GlpA Glycerol-3-phosph 99.9 1.7E-24 3.6E-29 200.7 31.9 344 5-375 10-385 (532)
24 TIGR03377 glycerol3P_GlpA glyc 99.9 1.8E-24 3.9E-29 208.9 30.2 322 23-375 1-346 (516)
25 TIGR01320 mal_quin_oxido malat 99.9 1.7E-23 3.6E-28 198.6 30.8 228 8-240 1-270 (483)
26 PTZ00383 malate:quinone oxidor 99.9 1.3E-23 2.8E-28 198.5 29.6 227 5-237 43-298 (497)
27 KOG3923 D-aspartate oxidase [A 99.9 2.4E-24 5.2E-29 180.2 21.5 315 7-374 3-334 (342)
28 PRK13339 malate:quinone oxidor 99.9 4.2E-23 9.1E-28 194.2 24.2 230 5-239 4-276 (497)
29 PRK05257 malate:quinone oxidor 99.9 7.1E-22 1.5E-26 187.6 24.1 229 5-239 3-275 (494)
30 KOG2665 Predicted FAD-dependen 99.9 6.4E-20 1.4E-24 154.9 21.7 354 5-374 46-452 (453)
31 KOG0042 Glycerol-3-phosphate d 99.8 1.2E-19 2.6E-24 163.8 11.6 340 5-373 65-445 (680)
32 PRK10157 putative oxidoreducta 99.8 8.1E-17 1.7E-21 151.9 22.6 175 6-229 4-178 (428)
33 PRK06185 hypothetical protein; 99.8 3E-16 6.4E-21 148.3 23.4 218 150-391 105-340 (407)
34 PRK08773 2-octaprenyl-3-methyl 99.7 2E-15 4.2E-20 141.8 22.8 76 149-230 109-184 (392)
35 COG0644 FixC Dehydrogenases (f 99.7 6E-15 1.3E-19 138.1 24.0 288 6-376 2-306 (396)
36 PRK07608 ubiquinone biosynthes 99.7 5.7E-15 1.2E-19 138.7 22.8 176 6-230 4-182 (388)
37 TIGR02032 GG-red-SF geranylger 99.7 1.7E-14 3.7E-19 130.3 24.7 198 148-373 86-295 (295)
38 TIGR01984 UbiH 2-polyprenyl-6- 99.7 5.5E-15 1.2E-19 138.5 21.5 220 149-391 101-331 (382)
39 COG2081 Predicted flavoprotein 99.7 8E-16 1.7E-20 136.0 14.7 167 6-214 2-168 (408)
40 PRK06834 hypothetical protein; 99.7 3.3E-14 7E-19 136.1 26.5 72 153-230 100-171 (488)
41 PRK06847 hypothetical protein; 99.7 3.2E-14 6.9E-19 133.0 25.7 63 148-214 102-164 (375)
42 PRK08244 hypothetical protein; 99.7 6.3E-14 1.4E-18 135.4 28.0 214 151-391 98-327 (493)
43 PRK07494 2-octaprenyl-6-methox 99.7 2.4E-15 5.1E-20 141.2 17.0 72 149-226 107-178 (388)
44 PRK05714 2-octaprenyl-3-methyl 99.7 3.1E-14 6.7E-19 134.3 24.4 81 149-235 108-188 (405)
45 TIGR01988 Ubi-OHases Ubiquinon 99.7 1.9E-14 4.1E-19 135.1 22.0 70 149-224 102-172 (385)
46 PRK07333 2-octaprenyl-6-methox 99.7 1.6E-14 3.5E-19 136.3 20.9 72 148-225 106-177 (403)
47 PLN02697 lycopene epsilon cycl 99.7 3.3E-14 7.2E-19 135.5 22.9 85 149-238 188-274 (529)
48 PRK06184 hypothetical protein; 99.6 4E-14 8.7E-19 137.0 23.8 67 153-225 109-178 (502)
49 PRK05732 2-octaprenyl-6-methox 99.6 5.8E-14 1.2E-18 132.3 24.1 78 151-234 110-188 (395)
50 PRK07190 hypothetical protein; 99.6 1.1E-13 2.4E-18 132.4 25.3 69 153-227 109-177 (487)
51 PRK08163 salicylate hydroxylas 99.6 3.5E-14 7.6E-19 133.7 21.3 62 149-214 105-167 (396)
52 PRK10015 oxidoreductase; Provi 99.6 4E-14 8.6E-19 133.5 21.3 69 148-223 103-172 (429)
53 COG0654 UbiH 2-polyprenyl-6-me 99.6 2.7E-14 5.8E-19 133.5 18.5 217 149-390 100-332 (387)
54 PRK07364 2-octaprenyl-6-methox 99.6 2E-13 4.4E-18 129.4 23.0 65 153-223 121-189 (415)
55 PRK08013 oxidoreductase; Provi 99.6 2.3E-13 5E-18 128.0 22.9 72 149-226 107-179 (400)
56 PRK06126 hypothetical protein; 99.6 4.1E-13 8.8E-18 131.4 25.4 68 151-224 124-197 (545)
57 PRK08020 ubiF 2-octaprenyl-3-m 99.6 7.4E-14 1.6E-18 131.2 19.4 70 149-224 108-178 (391)
58 PRK09126 hypothetical protein; 99.6 1.6E-13 3.4E-18 129.1 21.6 65 151-220 108-173 (392)
59 PRK06183 mhpA 3-(3-hydroxyphen 99.6 5.3E-13 1.2E-17 130.1 24.7 66 153-224 113-183 (538)
60 PRK08849 2-octaprenyl-3-methyl 99.6 1.8E-13 3.8E-18 128.1 20.4 214 153-392 110-333 (384)
61 PF03486 HI0933_like: HI0933-l 99.6 4.2E-15 9E-20 137.5 9.0 164 8-213 1-166 (409)
62 TIGR01790 carotene-cycl lycope 99.6 1.3E-12 2.7E-17 122.7 26.0 85 148-237 80-164 (388)
63 PF05834 Lycopene_cycl: Lycope 99.6 1.3E-13 2.9E-18 127.9 17.4 192 148-375 82-290 (374)
64 PF06039 Mqo: Malate:quinone o 99.6 7.5E-13 1.6E-17 119.8 21.5 229 6-238 2-272 (488)
65 PRK08132 FAD-dependent oxidore 99.6 1.5E-12 3.2E-17 127.4 25.5 68 153-226 125-196 (547)
66 PRK08850 2-octaprenyl-6-methox 99.6 1.1E-12 2.4E-17 123.7 23.5 79 151-235 109-188 (405)
67 PRK07045 putative monooxygenas 99.6 1.4E-12 3E-17 122.4 23.6 63 150-214 103-166 (388)
68 PRK06996 hypothetical protein; 99.5 3.7E-13 8E-18 126.5 18.0 74 148-226 110-186 (398)
69 PLN02463 lycopene beta cyclase 99.5 1E-12 2.3E-17 123.5 20.6 62 148-214 109-170 (447)
70 PF01494 FAD_binding_3: FAD bi 99.5 2.2E-13 4.7E-18 126.5 15.7 72 149-224 107-181 (356)
71 TIGR02023 BchP-ChlP geranylger 99.5 5.5E-12 1.2E-16 118.2 24.7 68 149-223 88-163 (388)
72 PRK08294 phenol 2-monooxygenas 99.5 4.6E-12 1E-16 124.8 24.4 221 150-391 138-395 (634)
73 PRK07588 hypothetical protein; 99.5 2.6E-12 5.7E-17 120.7 21.3 58 152-214 102-159 (391)
74 TIGR02734 crtI_fam phytoene de 99.5 1.5E-11 3.3E-16 119.3 27.2 67 141-213 210-276 (502)
75 PRK11445 putative oxidoreducta 99.5 8.9E-12 1.9E-16 115.0 24.2 66 149-220 95-163 (351)
76 PLN00093 geranylgeranyl diphos 99.5 2.1E-11 4.5E-16 115.4 26.8 68 149-220 128-205 (450)
77 PRK05868 hypothetical protein; 99.5 6.8E-12 1.5E-16 116.6 22.9 63 152-220 104-166 (372)
78 PRK06753 hypothetical protein; 99.5 3.2E-12 6.9E-17 119.4 20.6 60 149-214 94-153 (373)
79 PRK06617 2-octaprenyl-6-methox 99.5 6.2E-12 1.4E-16 117.2 22.4 62 148-214 99-161 (374)
80 PRK04176 ribulose-1,5-biphosph 99.5 1.3E-12 2.9E-17 113.9 16.0 145 6-220 24-179 (257)
81 PRK08274 tricarballylate dehyd 99.5 6.8E-13 1.5E-17 127.4 15.1 187 5-214 2-193 (466)
82 PRK07538 hypothetical protein; 99.5 1.9E-11 4.2E-16 115.5 24.5 62 149-214 98-166 (413)
83 PRK06481 fumarate reductase fl 99.5 8.3E-13 1.8E-17 127.3 14.8 182 6-214 60-252 (506)
84 PRK07233 hypothetical protein; 99.5 1E-10 2.2E-15 111.8 27.6 56 153-212 198-253 (434)
85 COG1233 Phytoene dehydrogenase 99.4 2.8E-12 6.1E-17 122.9 16.5 65 141-211 215-279 (487)
86 TIGR02028 ChlP geranylgeranyl 99.4 1.6E-10 3.5E-15 108.2 26.6 68 149-220 89-166 (398)
87 TIGR01989 COQ6 Ubiquinone bios 99.4 4E-11 8.6E-16 114.0 22.6 86 149-238 113-206 (437)
88 PRK08243 4-hydroxybenzoate 3-m 99.4 1.4E-10 3E-15 108.9 26.0 59 153-214 103-164 (392)
89 PRK06475 salicylate hydroxylas 99.4 3.1E-11 6.8E-16 113.6 20.4 61 150-214 104-168 (400)
90 PRK07121 hypothetical protein; 99.4 5.1E-12 1.1E-16 121.9 14.4 62 151-214 175-240 (492)
91 TIGR00292 thiazole biosynthesi 99.4 2.6E-11 5.6E-16 105.4 17.3 140 6-214 20-171 (254)
92 PLN02985 squalene monooxygenas 99.4 8.4E-11 1.8E-15 113.1 21.7 69 148-220 142-214 (514)
93 TIGR02730 carot_isom carotene 99.4 7.1E-12 1.5E-16 121.0 14.5 69 140-214 219-287 (493)
94 PF00890 FAD_binding_2: FAD bi 99.4 4.4E-12 9.5E-17 120.2 12.8 194 9-214 1-204 (417)
95 TIGR01789 lycopene_cycl lycope 99.4 6.3E-11 1.4E-15 109.6 19.9 190 148-374 84-286 (370)
96 TIGR02733 desat_CrtD C-3',4' d 99.4 3.4E-10 7.3E-15 109.6 25.8 46 8-53 2-47 (492)
97 COG1635 THI4 Ribulose 1,5-bisp 99.4 2.5E-11 5.5E-16 98.3 14.4 139 7-214 30-179 (262)
98 PRK06263 sdhA succinate dehydr 99.4 4E-11 8.7E-16 116.8 18.0 192 1-214 1-198 (543)
99 PRK11883 protoporphyrinogen ox 99.4 3.8E-10 8.3E-15 108.3 24.4 43 9-51 2-46 (451)
100 TIGR01813 flavo_cyto_c flavocy 99.3 9.4E-12 2E-16 118.6 13.1 180 9-214 1-193 (439)
101 TIGR03219 salicylate_mono sali 99.3 4.3E-10 9.3E-15 106.5 24.0 59 150-214 102-160 (414)
102 TIGR00275 flavoprotein, HI0933 99.3 1.9E-11 4.1E-16 114.4 14.3 179 11-233 1-190 (400)
103 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 6.8E-10 1.5E-14 104.0 24.7 59 153-214 103-164 (390)
104 TIGR02732 zeta_caro_desat caro 99.3 1.5E-09 3.2E-14 103.9 27.3 41 9-49 1-41 (474)
105 PF13738 Pyr_redox_3: Pyridine 99.3 1.2E-11 2.6E-16 105.1 11.6 65 152-220 81-145 (203)
106 PF01946 Thi4: Thi4 family; PD 99.3 5.4E-11 1.2E-15 97.2 14.6 140 6-214 16-166 (230)
107 PLN02927 antheraxanthin epoxid 99.3 3.6E-10 7.8E-15 110.1 22.6 59 149-214 190-249 (668)
108 PTZ00139 Succinate dehydrogena 99.3 6.4E-11 1.4E-15 116.5 17.7 191 6-214 28-230 (617)
109 PRK06175 L-aspartate oxidase; 99.3 4.3E-11 9.3E-16 113.1 15.5 184 6-214 3-190 (433)
110 PRK09078 sdhA succinate dehydr 99.3 1.5E-10 3.4E-15 113.6 19.5 192 6-215 11-214 (598)
111 PLN02612 phytoene desaturase 99.3 3.6E-09 7.7E-14 103.4 28.7 59 153-213 308-366 (567)
112 PRK06854 adenylylsulfate reduc 99.3 1.4E-11 3E-16 121.0 11.9 179 6-214 10-196 (608)
113 PRK07804 L-aspartate oxidase; 99.3 8.6E-11 1.9E-15 114.2 17.2 188 6-214 15-211 (541)
114 PRK05192 tRNA uridine 5-carbox 99.3 3.3E-11 7.1E-16 115.3 13.8 63 148-214 95-158 (618)
115 PRK06452 sdhA succinate dehydr 99.3 1.1E-10 2.4E-15 114.0 17.9 188 6-213 4-198 (566)
116 TIGR00562 proto_IX_ox protopor 99.3 1.6E-09 3.4E-14 104.3 25.7 46 8-53 3-52 (462)
117 TIGR00551 nadB L-aspartate oxi 99.3 1.1E-10 2.3E-15 112.4 17.5 184 7-214 2-190 (488)
118 PLN00128 Succinate dehydrogena 99.3 1.7E-10 3.7E-15 113.5 19.1 192 6-215 49-252 (635)
119 PRK12842 putative succinate de 99.3 6.7E-11 1.4E-15 116.0 16.2 41 5-45 7-47 (574)
120 PRK05945 sdhA succinate dehydr 99.3 1.6E-11 3.5E-16 120.2 11.7 188 7-214 3-198 (575)
121 PRK08958 sdhA succinate dehydr 99.3 2.2E-10 4.7E-15 112.2 19.3 197 1-214 1-207 (588)
122 PRK08626 fumarate reductase fl 99.3 4E-11 8.6E-16 118.5 14.0 195 5-214 3-221 (657)
123 PRK07236 hypothetical protein; 99.3 8.5E-11 1.8E-15 110.2 15.5 55 154-214 101-155 (386)
124 PF04820 Trp_halogenase: Trypt 99.3 1.6E-11 3.4E-16 116.3 10.4 65 146-213 147-211 (454)
125 PLN02172 flavin-containing mon 99.3 5.9E-11 1.3E-15 112.4 14.2 67 152-222 110-182 (461)
126 KOG2614 Kynurenine 3-monooxyge 99.3 7.9E-10 1.7E-14 98.6 20.2 37 7-43 2-38 (420)
127 PRK07573 sdhA succinate dehydr 99.3 1.4E-10 3.1E-15 114.4 17.2 193 6-214 34-233 (640)
128 COG1232 HemY Protoporphyrinoge 99.3 3E-09 6.5E-14 98.6 24.2 50 9-58 2-53 (444)
129 PRK08275 putative oxidoreducta 99.3 1.1E-10 2.4E-15 113.9 15.6 191 1-214 3-201 (554)
130 PRK08205 sdhA succinate dehydr 99.3 2E-10 4.4E-15 112.6 17.4 187 4-214 2-207 (583)
131 PRK06134 putative FAD-binding 99.3 1.5E-10 3.3E-15 113.4 16.2 66 147-214 211-279 (581)
132 PRK07208 hypothetical protein; 99.3 5.5E-10 1.2E-14 107.9 19.5 49 5-53 2-50 (479)
133 PRK12837 3-ketosteroid-delta-1 99.3 1.5E-10 3.3E-15 111.9 15.5 43 1-44 1-43 (513)
134 PRK07803 sdhA succinate dehydr 99.3 5.7E-11 1.2E-15 117.1 12.7 189 6-214 7-214 (626)
135 PRK05249 soluble pyridine nucl 99.2 2.9E-10 6.2E-15 109.2 17.2 58 153-214 216-273 (461)
136 TIGR01812 sdhA_frdA_Gneg succi 99.2 2.6E-10 5.7E-15 112.0 17.2 185 9-214 1-192 (566)
137 PLN02487 zeta-carotene desatur 99.2 1.1E-08 2.4E-13 98.9 27.4 63 154-218 296-366 (569)
138 PRK07057 sdhA succinate dehydr 99.2 4.8E-10 1E-14 110.0 18.3 191 6-214 11-212 (591)
139 PRK12416 protoporphyrinogen ox 99.2 2.8E-09 6.1E-14 102.4 23.0 45 9-53 3-53 (463)
140 PRK08071 L-aspartate oxidase; 99.2 6E-11 1.3E-15 114.4 11.3 184 7-214 3-191 (510)
141 TIGR02485 CobZ_N-term precorri 99.2 1.5E-10 3.3E-15 109.9 13.4 181 12-214 1-184 (432)
142 PRK06069 sdhA succinate dehydr 99.2 2.2E-10 4.7E-15 112.5 14.8 188 5-214 3-201 (577)
143 TIGR01292 TRX_reduct thioredox 99.2 2.3E-10 4.9E-15 103.6 13.8 56 153-213 57-112 (300)
144 PRK07512 L-aspartate oxidase; 99.2 5.8E-11 1.3E-15 114.6 10.2 187 5-214 7-198 (513)
145 PRK08641 sdhA succinate dehydr 99.2 5.2E-10 1.1E-14 109.7 17.0 189 7-214 3-201 (589)
146 TIGR01176 fum_red_Fp fumarate 99.2 6.9E-10 1.5E-14 108.4 17.5 185 7-214 3-196 (580)
147 PRK12839 hypothetical protein; 99.2 2.5E-10 5.5E-15 111.2 14.4 63 150-214 211-277 (572)
148 PLN02815 L-aspartate oxidase 99.2 9.7E-11 2.1E-15 114.2 11.3 186 6-214 28-223 (594)
149 PRK08401 L-aspartate oxidase; 99.2 7.3E-10 1.6E-14 106.0 17.0 177 8-216 2-178 (466)
150 PRK06116 glutathione reductase 99.2 1E-09 2.2E-14 105.0 17.9 59 153-214 208-266 (450)
151 PRK09231 fumarate reductase fl 99.2 1.5E-10 3.3E-15 113.3 12.3 187 6-214 3-197 (582)
152 TIGR03378 glycerol3P_GlpB glyc 99.2 4.4E-10 9.5E-15 103.3 14.3 65 153-220 263-330 (419)
153 PTZ00367 squalene epoxidase; P 99.2 6.9E-09 1.5E-13 100.5 22.7 35 6-40 32-66 (567)
154 PRK07395 L-aspartate oxidase; 99.2 7.3E-10 1.6E-14 107.6 16.0 187 5-214 7-198 (553)
155 TIGR02731 phytoene_desat phyto 99.2 1.1E-09 2.5E-14 104.9 17.1 59 152-212 212-275 (453)
156 PTZ00363 rab-GDP dissociation 99.2 3.2E-10 6.9E-15 106.3 12.9 60 153-214 232-291 (443)
157 TIGR00136 gidA glucose-inhibit 99.2 5.5E-10 1.2E-14 106.8 14.6 63 148-213 91-154 (617)
158 PF01134 GIDA: Glucose inhibit 99.2 2.6E-10 5.6E-15 103.5 11.2 60 148-211 90-150 (392)
159 PLN02576 protoporphyrinogen ox 99.2 1.2E-08 2.5E-13 99.2 23.2 49 5-53 10-59 (496)
160 PRK12844 3-ketosteroid-delta-1 99.1 6.3E-10 1.4E-14 108.5 14.2 59 153-214 208-270 (557)
161 COG1231 Monoamine oxidase [Ami 99.1 1E-09 2.2E-14 99.4 14.4 50 2-51 2-51 (450)
162 PRK06370 mercuric reductase; V 99.1 1.3E-09 2.9E-14 104.5 16.3 41 4-44 2-42 (463)
163 PRK07843 3-ketosteroid-delta-1 99.1 6.8E-10 1.5E-14 108.3 14.2 44 1-44 1-44 (557)
164 COG3380 Predicted NAD/FAD-depe 99.1 3.6E-10 7.8E-15 94.6 10.2 161 9-217 3-165 (331)
165 PF12831 FAD_oxidored: FAD dep 99.1 4.3E-11 9.3E-16 113.1 5.4 146 9-211 1-148 (428)
166 PRK12845 3-ketosteroid-delta-1 99.1 7.9E-10 1.7E-14 107.5 13.8 40 5-45 14-53 (564)
167 PRK08010 pyridine nucleotide-d 99.1 2.1E-09 4.5E-14 102.6 16.4 57 153-214 199-255 (441)
168 COG0492 TrxB Thioredoxin reduc 99.1 8.3E-10 1.8E-14 98.2 12.7 58 153-216 61-118 (305)
169 TIGR03143 AhpF_homolog putativ 99.1 6.9E-10 1.5E-14 108.3 13.2 56 153-214 60-115 (555)
170 COG2072 TrkA Predicted flavopr 99.1 9.6E-10 2.1E-14 103.8 13.7 66 156-223 85-154 (443)
171 PRK09077 L-aspartate oxidase; 99.1 4E-09 8.6E-14 102.6 18.3 187 5-214 6-208 (536)
172 TIGR01811 sdhA_Bsu succinate d 99.1 1.9E-09 4.1E-14 105.9 16.2 187 10-214 1-197 (603)
173 PRK12835 3-ketosteroid-delta-1 99.1 7.4E-10 1.6E-14 108.4 12.2 40 5-44 9-48 (584)
174 KOG1399 Flavin-containing mono 99.1 9.4E-10 2E-14 102.4 11.8 152 5-222 4-162 (448)
175 PTZ00306 NADH-dependent fumara 99.1 1.4E-09 3.1E-14 114.4 14.5 183 6-214 408-621 (1167)
176 PRK12843 putative FAD-binding 99.1 6.3E-09 1.4E-13 102.1 18.1 62 150-214 218-283 (578)
177 PLN02268 probable polyamine ox 99.1 4.9E-09 1.1E-13 100.0 17.0 42 9-50 2-43 (435)
178 TIGR02061 aprA adenosine phosp 99.1 4.1E-09 8.8E-14 103.0 16.5 180 9-216 1-194 (614)
179 TIGR01424 gluta_reduc_2 glutat 99.1 2.4E-09 5.2E-14 102.1 14.6 35 7-41 2-36 (446)
180 COG1249 Lpd Pyruvate/2-oxoglut 99.1 8.7E-09 1.9E-13 96.5 17.7 57 152-212 213-271 (454)
181 PRK13977 myosin-cross-reactive 99.1 1.2E-08 2.6E-13 97.0 18.7 43 7-49 22-68 (576)
182 COG2907 Predicted NAD/FAD-bind 99.1 1E-09 2.2E-14 95.2 10.4 47 2-49 3-49 (447)
183 PRK12834 putative FAD-binding 99.1 1.8E-09 3.8E-14 105.5 13.5 35 6-40 3-37 (549)
184 PRK15317 alkyl hydroperoxide r 99.1 2.6E-09 5.6E-14 103.7 14.5 57 153-213 266-322 (517)
185 PRK06467 dihydrolipoamide dehy 99.1 3.7E-09 8.1E-14 101.3 15.4 40 5-44 2-41 (471)
186 PLN02661 Putative thiazole syn 99.1 3.5E-09 7.5E-14 94.7 14.0 38 6-43 91-129 (357)
187 COG2509 Uncharacterized FAD-de 99.1 3E-08 6.6E-13 89.6 19.9 73 145-220 165-237 (486)
188 PLN02676 polyamine oxidase 99.1 1.5E-08 3.4E-13 97.1 19.4 45 5-49 24-69 (487)
189 PRK06416 dihydrolipoamide dehy 99.1 1E-08 2.3E-13 98.4 18.2 58 153-214 213-273 (462)
190 KOG2415 Electron transfer flav 99.1 1.6E-09 3.4E-14 96.1 11.2 169 5-220 74-266 (621)
191 TIGR01421 gluta_reduc_1 glutat 99.1 4.1E-09 8.8E-14 100.5 15.0 37 6-42 1-37 (450)
192 PRK07251 pyridine nucleotide-d 99.0 6E-09 1.3E-13 99.3 15.9 57 153-214 198-254 (438)
193 PRK05976 dihydrolipoamide dehy 99.0 4.3E-09 9.4E-14 101.2 15.0 38 5-42 2-39 (472)
194 KOG0029 Amine oxidase [Seconda 99.0 1.6E-09 3.6E-14 102.7 11.1 48 5-52 13-60 (501)
195 PRK13800 putative oxidoreducta 99.0 1.2E-08 2.6E-13 105.1 17.9 37 6-42 12-48 (897)
196 TIGR03140 AhpF alkyl hydropero 99.0 6.2E-09 1.3E-13 100.9 15.0 57 153-213 267-323 (515)
197 PRK14694 putative mercuric red 99.0 1.5E-08 3.2E-13 97.3 17.4 57 153-214 218-274 (468)
198 TIGR01350 lipoamide_DH dihydro 99.0 1.1E-08 2.5E-13 98.2 16.6 58 153-214 211-270 (461)
199 COG1053 SdhA Succinate dehydro 99.0 8.9E-10 1.9E-14 106.0 8.8 192 3-213 2-202 (562)
200 PLN02507 glutathione reductase 99.0 9.4E-09 2E-13 99.0 15.5 32 7-38 25-56 (499)
201 PRK14727 putative mercuric red 99.0 1.8E-08 4E-13 96.9 17.4 57 153-214 228-284 (479)
202 PRK06327 dihydrolipoamide dehy 99.0 1.2E-08 2.5E-13 98.2 15.9 34 5-38 2-35 (475)
203 COG0029 NadB Aspartate oxidase 99.0 1.3E-09 2.8E-14 99.5 8.6 178 9-214 9-197 (518)
204 PLN02568 polyamine oxidase 99.0 1.9E-08 4.2E-13 97.2 17.3 46 4-49 2-52 (539)
205 PF13454 NAD_binding_9: FAD-NA 99.0 1.2E-08 2.6E-13 82.2 13.2 42 166-211 113-155 (156)
206 PLN02546 glutathione reductase 99.0 9.6E-09 2.1E-13 99.6 14.6 32 7-38 79-110 (558)
207 PRK07818 dihydrolipoamide dehy 99.0 5.7E-08 1.2E-12 93.3 19.6 58 153-214 213-274 (466)
208 COG1252 Ndh NADH dehydrogenase 99.0 1.2E-07 2.7E-12 86.7 20.2 62 151-220 207-269 (405)
209 PTZ00058 glutathione reductase 99.0 1.3E-08 2.7E-13 98.8 14.6 37 6-42 47-83 (561)
210 PF00732 GMC_oxred_N: GMC oxid 99.0 4E-09 8.7E-14 95.2 10.6 35 8-42 1-36 (296)
211 KOG4254 Phytoene desaturase [C 99.0 1.5E-08 3.3E-13 90.9 13.5 73 136-214 250-322 (561)
212 PRK13748 putative mercuric red 99.0 4.3E-08 9.3E-13 96.6 18.1 57 153-214 310-366 (561)
213 PRK05329 anaerobic glycerol-3- 98.9 1.1E-07 2.3E-12 88.9 19.5 60 152-214 258-319 (422)
214 PRK06115 dihydrolipoamide dehy 98.9 2.1E-08 4.6E-13 96.1 15.3 38 7-44 3-40 (466)
215 TIGR02053 MerA mercuric reduct 98.9 4.8E-08 1E-12 93.9 17.3 58 153-214 207-267 (463)
216 PRK02106 choline dehydrogenase 98.9 4.5E-08 9.8E-13 96.1 17.3 38 4-41 2-40 (560)
217 PF13450 NAD_binding_8: NAD(P) 98.9 1.7E-09 3.7E-14 73.2 5.0 42 12-53 1-42 (68)
218 COG3075 GlpB Anaerobic glycero 98.9 2.5E-08 5.5E-13 86.0 12.9 72 153-227 258-332 (421)
219 KOG1298 Squalene monooxygenase 98.9 1E-09 2.3E-14 96.3 4.4 66 151-220 145-214 (509)
220 PTZ00052 thioredoxin reductase 98.9 1.1E-07 2.3E-12 91.8 18.5 58 153-214 222-279 (499)
221 PF00743 FMO-like: Flavin-bind 98.9 9E-09 2E-13 99.0 10.8 66 151-218 82-155 (531)
222 PRK08255 salicylyl-CoA 5-hydro 98.9 9E-08 1.9E-12 97.0 18.2 49 150-214 94-142 (765)
223 PRK10262 thioredoxin reductase 98.9 3.8E-08 8.3E-13 89.8 14.2 37 5-41 4-40 (321)
224 PRK09897 hypothetical protein; 98.9 7.8E-08 1.7E-12 92.3 16.4 54 157-214 111-167 (534)
225 PRK07845 flavoprotein disulfid 98.9 9.4E-08 2E-12 91.7 16.2 35 8-42 2-36 (466)
226 TIGR01810 betA choline dehydro 98.8 1.1E-07 2.4E-12 92.8 15.9 33 9-41 1-34 (532)
227 PLN02529 lysine-specific histo 98.8 2.2E-07 4.7E-12 92.1 16.7 45 6-50 159-203 (738)
228 PRK06912 acoL dihydrolipoamide 98.8 1.6E-07 3.4E-12 90.1 15.3 35 9-43 2-36 (458)
229 PLN02328 lysine-specific histo 98.8 1.8E-07 3.9E-12 93.2 15.9 45 6-50 237-281 (808)
230 TIGR01438 TGR thioredoxin and 98.8 4.2E-07 9.1E-12 87.4 17.6 58 153-214 220-280 (484)
231 COG2303 BetA Choline dehydroge 98.8 1.1E-07 2.4E-12 92.3 13.6 39 2-40 2-40 (542)
232 KOG0685 Flavin-containing amin 98.8 1.6E-07 3.5E-12 85.4 13.3 44 5-48 19-63 (498)
233 PRK06292 dihydrolipoamide dehy 98.8 1.3E-07 2.7E-12 91.0 13.6 35 7-41 3-37 (460)
234 TIGR01423 trypano_reduc trypan 98.7 2.2E-07 4.7E-12 89.1 14.6 34 6-39 2-36 (486)
235 COG0445 GidA Flavin-dependent 98.7 3.5E-08 7.7E-13 91.1 8.5 154 6-214 3-159 (621)
236 PF00070 Pyr_redox: Pyridine n 98.7 2.4E-07 5.3E-12 65.4 11.0 34 9-42 1-34 (80)
237 KOG2404 Fumarate reductase, fl 98.7 1.3E-07 2.7E-12 81.5 10.5 36 9-44 11-46 (477)
238 PLN03000 amine oxidase 98.7 2.3E-07 5E-12 92.5 13.9 45 6-50 183-227 (881)
239 KOG1335 Dihydrolipoamide dehyd 98.7 4.9E-07 1.1E-11 79.8 13.8 56 153-211 252-312 (506)
240 PRK07846 mycothione reductase; 98.7 1.9E-06 4.1E-11 82.3 18.1 56 154-214 208-263 (451)
241 PF07992 Pyr_redox_2: Pyridine 98.6 2.4E-07 5.2E-12 78.5 10.5 32 9-40 1-32 (201)
242 PTZ00153 lipoamide dehydrogena 98.6 5.7E-07 1.2E-11 88.6 13.8 34 6-39 115-148 (659)
243 COG3573 Predicted oxidoreducta 98.6 1.2E-06 2.7E-11 76.0 13.4 36 6-41 4-39 (552)
244 PLN02785 Protein HOTHEAD 98.6 1E-06 2.2E-11 86.2 14.6 35 6-41 54-88 (587)
245 PRK12779 putative bifunctional 98.6 1.7E-07 3.7E-12 96.2 9.1 38 6-43 305-342 (944)
246 COG3349 Uncharacterized conser 98.6 8.2E-08 1.8E-12 88.9 6.0 44 9-52 2-45 (485)
247 PRK09564 coenzyme A disulfide 98.6 4.5E-07 9.8E-12 86.8 11.4 34 9-42 2-37 (444)
248 PRK13512 coenzyme A disulfide 98.5 3.8E-06 8.3E-11 80.0 16.7 59 153-219 189-248 (438)
249 PRK04965 NADH:flavorubredoxin 98.5 1.8E-06 3.9E-11 80.7 14.2 59 158-220 188-247 (377)
250 PTZ00318 NADH dehydrogenase-li 98.5 4.4E-07 9.5E-12 86.0 9.7 37 5-41 8-44 (424)
251 TIGR01372 soxA sarcosine oxida 98.5 1E-06 2.2E-11 91.8 13.2 37 7-43 163-199 (985)
252 PRK09754 phenylpropionate diox 98.5 2.1E-06 4.6E-11 80.7 14.1 57 158-219 191-248 (396)
253 PRK09853 putative selenate red 98.5 6.4E-07 1.4E-11 91.1 11.2 38 6-43 538-575 (1019)
254 TIGR03452 mycothione_red mycot 98.5 9.1E-06 2E-10 77.7 17.9 57 153-214 210-266 (452)
255 TIGR00031 UDP-GALP_mutase UDP- 98.5 3E-07 6.4E-12 84.5 7.3 46 8-53 2-47 (377)
256 PRK09754 phenylpropionate diox 98.5 1.1E-06 2.3E-11 82.7 11.1 45 164-214 69-113 (396)
257 TIGR03169 Nterm_to_SelD pyridi 98.5 6.8E-07 1.5E-11 83.2 8.9 47 160-213 61-107 (364)
258 PLN02976 amine oxidase 98.4 9.6E-06 2.1E-10 84.3 17.2 43 6-48 692-734 (1713)
259 PRK04965 NADH:flavorubredoxin 98.4 2.3E-06 5.1E-11 79.9 11.6 46 161-213 66-111 (377)
260 TIGR03467 HpnE squalene-associ 98.4 0.00013 2.8E-09 69.4 23.1 53 157-213 201-254 (419)
261 PRK11749 dihydropyrimidine deh 98.4 1.7E-05 3.8E-10 76.0 16.9 39 6-44 139-177 (457)
262 KOG4716 Thioredoxin reductase 98.4 8.6E-07 1.9E-11 77.0 6.6 48 5-53 17-64 (503)
263 PRK12778 putative bifunctional 98.4 1E-06 2.2E-11 89.6 8.3 38 6-43 430-467 (752)
264 COG0562 Glf UDP-galactopyranos 98.3 1.7E-06 3.7E-11 74.8 7.8 43 8-50 2-44 (374)
265 KOG1238 Glucose dehydrogenase/ 98.3 1.3E-05 2.9E-10 76.3 14.4 38 5-42 55-93 (623)
266 KOG0404 Thioredoxin reductase 98.3 4.1E-06 8.9E-11 68.6 9.3 58 153-216 70-127 (322)
267 KOG0405 Pyridine nucleotide-di 98.3 6.6E-06 1.4E-10 71.9 10.9 56 154-212 231-286 (478)
268 TIGR02374 nitri_red_nirB nitri 98.3 2.3E-06 5E-11 87.1 9.5 46 162-213 63-108 (785)
269 TIGR01421 gluta_reduc_1 glutat 98.3 1.2E-05 2.7E-10 76.8 13.4 55 157-214 211-266 (450)
270 PRK14989 nitrite reductase sub 98.3 4.7E-06 1E-10 85.0 11.0 46 162-213 68-113 (847)
271 PLN02507 glutathione reductase 98.3 1.2E-05 2.6E-10 77.7 13.3 53 158-214 249-301 (499)
272 COG4529 Uncharacterized protei 98.3 1.5E-05 3.3E-10 73.4 12.9 36 8-43 2-40 (474)
273 PRK14989 nitrite reductase sub 98.3 1.4E-05 3E-10 81.6 13.8 61 157-219 191-252 (847)
274 PRK09564 coenzyme A disulfide 98.3 1.6E-05 3.6E-10 76.1 13.7 60 156-220 194-254 (444)
275 TIGR01424 gluta_reduc_2 glutat 98.3 1.4E-05 3.1E-10 76.4 13.1 52 159-214 213-264 (446)
276 TIGR03385 CoA_CoA_reduc CoA-di 98.3 1.9E-05 4.1E-10 75.2 13.8 57 158-220 184-241 (427)
277 PRK06912 acoL dihydrolipoamide 98.2 2.5E-05 5.5E-10 74.9 14.3 53 158-214 216-269 (458)
278 KOG2311 NAD/FAD-utilizing prot 98.2 3.2E-06 6.9E-11 76.9 7.5 35 6-40 27-61 (679)
279 PRK07845 flavoprotein disulfid 98.2 2E-05 4.3E-10 75.7 13.5 53 158-214 223-275 (466)
280 TIGR02374 nitri_red_nirB nitri 98.2 1.6E-05 3.4E-10 81.1 13.4 58 158-219 187-245 (785)
281 PRK05976 dihydrolipoamide dehy 98.2 2E-05 4.3E-10 76.0 13.3 34 8-41 181-214 (472)
282 PF01593 Amino_oxidase: Flavin 98.2 1.4E-05 3.1E-10 76.2 11.8 51 159-213 215-265 (450)
283 COG3634 AhpF Alkyl hydroperoxi 98.2 4.8E-06 1E-10 72.7 7.0 58 153-212 266-324 (520)
284 PTZ00318 NADH dehydrogenase-li 98.2 3.1E-05 6.6E-10 73.5 13.2 56 157-220 232-287 (424)
285 TIGR03862 flavo_PP4765 unchara 98.2 3.2E-05 7E-10 70.9 12.6 76 151-233 84-171 (376)
286 PRK06115 dihydrolipoamide dehy 98.1 4.1E-05 8.9E-10 73.6 13.5 35 7-41 174-208 (466)
287 TIGR01423 trypano_reduc trypan 98.1 4.3E-05 9.3E-10 73.5 13.2 55 157-214 235-289 (486)
288 PRK06327 dihydrolipoamide dehy 98.1 4.8E-05 1E-09 73.4 13.1 33 8-40 184-216 (475)
289 COG1148 HdrA Heterodisulfide r 98.1 4.1E-06 8.8E-11 76.4 4.9 41 7-47 124-164 (622)
290 PRK05335 tRNA (uracil-5-)-meth 98.1 4.3E-06 9.3E-11 77.2 5.0 35 8-42 3-37 (436)
291 PTZ00058 glutathione reductase 98.1 7E-05 1.5E-09 73.0 13.3 34 7-40 237-270 (561)
292 PRK05675 sdhA succinate dehydr 98.0 8.6E-05 1.9E-09 73.0 13.3 61 152-214 125-190 (570)
293 TIGR03315 Se_ygfK putative sel 98.0 6.5E-06 1.4E-10 84.3 5.5 39 7-45 537-575 (1012)
294 PF06100 Strep_67kDa_ant: Stre 98.0 0.00032 7E-09 65.4 15.8 44 7-50 2-49 (500)
295 PF13434 K_oxygenase: L-lysine 98.0 2.8E-05 6.1E-10 71.0 8.9 35 7-41 2-37 (341)
296 PRK06467 dihydrolipoamide dehy 98.0 0.00011 2.4E-09 70.7 12.8 34 8-41 175-208 (471)
297 PRK12831 putative oxidoreducta 98.0 1.1E-05 2.4E-10 77.2 5.6 39 6-44 139-177 (464)
298 PLN02546 glutathione reductase 97.9 0.00018 3.9E-09 70.2 13.1 54 158-214 298-351 (558)
299 PTZ00153 lipoamide dehydrogena 97.9 0.00017 3.7E-09 71.5 12.9 34 8-41 313-346 (659)
300 KOG3855 Monooxygenase involved 97.9 0.00067 1.5E-08 61.2 15.2 61 164-226 164-228 (481)
301 KOG1276 Protoporphyrinogen oxi 97.9 2.9E-05 6.3E-10 70.0 6.6 43 6-48 10-54 (491)
302 PF00996 GDI: GDP dissociation 97.9 0.00037 8.1E-09 65.2 14.1 45 4-48 1-45 (438)
303 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.6E-05 3.4E-10 73.9 4.8 35 8-42 1-35 (433)
304 TIGR01316 gltA glutamate synth 97.9 2.4E-05 5.2E-10 74.8 5.9 39 6-44 132-170 (449)
305 KOG1336 Monodehydroascorbate/f 97.8 0.00016 3.5E-09 66.4 10.6 58 155-214 257-314 (478)
306 COG0446 HcaD Uncharacterized N 97.8 0.00018 3.9E-09 68.2 11.8 104 8-218 137-242 (415)
307 PRK06292 dihydrolipoamide dehy 97.8 0.0003 6.5E-09 67.7 13.2 35 7-41 169-203 (460)
308 PLN02852 ferredoxin-NADP+ redu 97.8 2.5E-05 5.3E-10 74.4 5.5 40 6-45 25-66 (491)
309 PRK12810 gltD glutamate syntha 97.7 4.2E-05 9.1E-10 73.6 5.7 39 6-44 142-180 (471)
310 PRK12769 putative oxidoreducta 97.7 3.8E-05 8.2E-10 77.0 5.5 39 6-44 326-364 (654)
311 PRK12775 putative trifunctiona 97.7 3.5E-05 7.7E-10 80.2 5.2 39 6-44 429-467 (1006)
312 PRK06567 putative bifunctional 97.7 5E-05 1.1E-09 76.8 5.6 36 6-41 382-417 (1028)
313 PF13434 K_oxygenase: L-lysine 97.7 0.00065 1.4E-08 62.1 12.4 35 6-40 189-225 (341)
314 TIGR02462 pyranose_ox pyranose 97.7 5.5E-05 1.2E-09 72.9 5.1 36 8-43 1-36 (544)
315 TIGR03169 Nterm_to_SelD pyridi 97.6 0.001 2.2E-08 62.0 13.2 54 158-219 196-249 (364)
316 PRK12770 putative glutamate sy 97.6 8.6E-05 1.9E-09 68.7 5.9 39 6-44 17-55 (352)
317 PRK12809 putative oxidoreducta 97.6 0.00017 3.6E-09 72.1 8.3 39 6-44 309-347 (639)
318 PRK12814 putative NADPH-depend 97.6 7.1E-05 1.5E-09 74.8 5.5 38 7-44 193-230 (652)
319 TIGR01318 gltD_gamma_fam gluta 97.6 9.6E-05 2.1E-09 70.9 5.7 39 6-44 140-178 (467)
320 PTZ00188 adrenodoxin reductase 97.6 0.0001 2.2E-09 69.4 5.6 39 7-45 39-78 (506)
321 KOG2495 NADH-dehydrogenase (ub 97.6 0.007 1.5E-07 55.2 16.4 102 123-233 243-348 (491)
322 PRK10262 thioredoxin reductase 97.5 0.0011 2.4E-08 60.6 11.0 33 8-40 147-179 (321)
323 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00017 3.7E-09 69.6 5.5 37 7-43 143-179 (485)
324 TIGR01316 gltA glutamate synth 97.5 0.0011 2.4E-08 63.5 10.9 32 8-39 273-304 (449)
325 TIGR01816 sdhA_forward succina 97.4 0.004 8.7E-08 61.4 14.6 61 152-215 118-183 (565)
326 TIGR03140 AhpF alkyl hydropero 97.4 0.0011 2.4E-08 64.6 10.6 32 8-39 353-384 (515)
327 TIGR01292 TRX_reduct thioredox 97.4 0.0013 2.9E-08 59.2 10.5 32 8-39 142-173 (300)
328 KOG2960 Protein involved in th 97.4 4.7E-05 1E-09 61.9 0.4 38 7-44 76-115 (328)
329 PRK12771 putative glutamate sy 97.4 0.00026 5.6E-09 69.9 5.5 39 6-44 136-174 (564)
330 PRK12770 putative glutamate sy 97.3 0.0014 3.1E-08 60.6 9.6 32 8-39 173-205 (352)
331 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00038 8.2E-09 62.0 4.8 41 5-45 18-60 (468)
332 PRK13984 putative oxidoreducta 97.2 0.00043 9.3E-09 69.0 5.6 39 6-44 282-320 (604)
333 COG3486 IucD Lysine/ornithine 97.2 0.0037 8.1E-08 56.6 10.4 39 4-42 2-41 (436)
334 KOG3851 Sulfide:quinone oxidor 97.2 0.0057 1.2E-07 53.5 11.1 36 5-40 37-74 (446)
335 COG0493 GltD NADPH-dependent g 97.2 0.00036 7.8E-09 65.9 4.2 38 7-44 123-160 (457)
336 COG1251 NirB NAD(P)H-nitrite r 97.1 0.0023 5E-08 62.3 8.2 58 158-219 192-250 (793)
337 PRK12831 putative oxidoreducta 97.1 0.0066 1.4E-07 58.3 11.5 32 8-39 282-313 (464)
338 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00094 2E-08 58.4 4.7 35 8-42 4-38 (439)
339 PRK15317 alkyl hydroperoxide r 96.9 0.0072 1.6E-07 59.1 10.3 33 8-40 352-384 (517)
340 KOG1439 RAB proteins geranylge 96.9 0.077 1.7E-06 48.2 15.6 44 5-48 2-45 (440)
341 PF02737 3HCDH_N: 3-hydroxyacy 96.7 0.0023 4.9E-08 52.8 4.1 32 9-40 1-32 (180)
342 TIGR01372 soxA sarcosine oxida 96.6 0.024 5.2E-07 59.8 12.4 57 162-220 360-419 (985)
343 PRK12778 putative bifunctional 96.5 0.025 5.4E-07 58.0 11.5 32 8-39 571-603 (752)
344 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0036 7.9E-08 50.4 4.2 32 9-40 1-32 (157)
345 PRK07066 3-hydroxybutyryl-CoA 96.5 0.0045 9.7E-08 55.9 5.1 40 1-40 1-40 (321)
346 KOG0399 Glutamate synthase [Am 96.4 0.0032 6.8E-08 63.9 4.2 38 7-44 1785-1822(2142)
347 PRK12810 gltD glutamate syntha 96.4 0.031 6.7E-07 54.0 11.0 32 8-39 282-314 (471)
348 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0034 7.4E-08 51.9 3.7 32 9-40 2-33 (185)
349 PF02558 ApbA: Ketopantoate re 96.3 0.0064 1.4E-07 48.6 4.7 31 10-40 1-31 (151)
350 TIGR01318 gltD_gamma_fam gluta 96.3 0.031 6.8E-07 53.8 10.1 33 8-40 283-316 (467)
351 COG0569 TrkA K+ transport syst 96.2 0.0057 1.2E-07 52.4 4.3 33 9-41 2-34 (225)
352 PRK07819 3-hydroxybutyryl-CoA 96.2 0.0069 1.5E-07 54.1 4.7 34 8-41 6-39 (286)
353 KOG1336 Monodehydroascorbate/f 96.2 0.022 4.8E-07 52.8 7.7 44 162-211 136-179 (478)
354 PRK12769 putative oxidoreducta 96.1 0.042 9.2E-07 55.4 10.5 32 8-39 469-501 (654)
355 PRK06249 2-dehydropantoate 2-r 96.1 0.0097 2.1E-07 54.0 5.1 34 7-40 5-38 (313)
356 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.0075 1.6E-07 54.6 4.3 32 9-40 4-35 (308)
357 COG1251 NirB NAD(P)H-nitrite r 96.0 0.073 1.6E-06 52.3 10.6 47 161-213 67-113 (793)
358 PRK07530 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 53.3 4.7 34 7-40 4-37 (292)
359 COG1004 Ugd Predicted UDP-gluc 95.9 0.0093 2E-07 54.1 4.2 32 9-40 2-33 (414)
360 PRK12814 putative NADPH-depend 95.9 0.069 1.5E-06 53.7 10.9 34 7-40 323-357 (652)
361 PRK12779 putative bifunctional 95.9 0.096 2.1E-06 54.8 11.8 32 8-39 448-479 (944)
362 PRK09853 putative selenate red 95.8 0.092 2E-06 54.6 11.4 33 8-40 669-703 (1019)
363 PRK05708 2-dehydropantoate 2-r 95.8 0.013 2.8E-07 52.9 4.8 32 8-39 3-34 (305)
364 PRK01438 murD UDP-N-acetylmura 95.7 0.014 2.9E-07 56.7 4.9 34 7-40 16-49 (480)
365 PRK08293 3-hydroxybutyryl-CoA 95.6 0.015 3.2E-07 52.1 4.4 33 8-40 4-36 (287)
366 COG5044 MRS6 RAB proteins gera 95.6 0.025 5.3E-07 50.7 5.4 43 6-48 5-47 (434)
367 PTZ00082 L-lactate dehydrogena 95.6 0.023 5E-07 51.5 5.4 40 1-41 1-41 (321)
368 PRK02705 murD UDP-N-acetylmura 95.6 0.016 3.4E-07 55.9 4.6 34 9-42 2-35 (459)
369 PRK09260 3-hydroxybutyryl-CoA 95.5 0.015 3.4E-07 52.0 4.2 32 9-40 3-34 (288)
370 PRK08268 3-hydroxy-acyl-CoA de 95.5 0.02 4.3E-07 55.4 5.0 41 1-41 1-41 (507)
371 PRK07251 pyridine nucleotide-d 95.4 0.021 4.5E-07 54.7 4.8 36 7-42 157-192 (438)
372 PRK08229 2-dehydropantoate 2-r 95.4 0.021 4.6E-07 52.6 4.7 33 8-40 3-35 (341)
373 COG1249 Lpd Pyruvate/2-oxoglut 95.4 0.022 4.9E-07 54.0 4.9 36 7-42 173-208 (454)
374 PRK07818 dihydrolipoamide dehy 95.3 0.083 1.8E-06 51.0 8.6 35 8-42 173-207 (466)
375 TIGR02354 thiF_fam2 thiamine b 95.3 0.03 6.5E-07 47.0 4.9 36 6-41 20-56 (200)
376 PRK06130 3-hydroxybutyryl-CoA 95.3 0.027 5.8E-07 51.2 4.8 33 8-40 5-37 (311)
377 PRK12921 2-dehydropantoate 2-r 95.3 0.024 5.3E-07 51.3 4.5 30 9-38 2-31 (305)
378 PRK06719 precorrin-2 dehydroge 95.2 0.035 7.5E-07 44.6 4.9 33 6-38 12-44 (157)
379 PRK06522 2-dehydropantoate 2-r 95.2 0.024 5.2E-07 51.3 4.5 31 9-39 2-32 (304)
380 PRK07846 mycothione reductase; 95.2 0.026 5.7E-07 54.1 4.8 36 7-42 166-201 (451)
381 PLN02545 3-hydroxybutyryl-CoA 95.2 0.028 6.1E-07 50.6 4.8 33 8-40 5-37 (295)
382 PRK06370 mercuric reductase; V 95.2 0.093 2E-06 50.6 8.6 35 8-42 172-206 (463)
383 PRK06035 3-hydroxyacyl-CoA deh 95.2 0.023 5.1E-07 51.0 4.2 33 8-40 4-36 (291)
384 PRK14618 NAD(P)H-dependent gly 95.2 0.032 7E-07 51.0 5.1 33 8-40 5-37 (328)
385 TIGR01350 lipoamide_DH dihydro 95.2 0.026 5.6E-07 54.5 4.6 36 7-42 170-205 (461)
386 PRK06718 precorrin-2 dehydroge 95.1 0.037 8E-07 46.5 5.0 34 6-39 9-42 (202)
387 TIGR02053 MerA mercuric reduct 95.1 0.029 6.2E-07 54.1 4.9 35 8-42 167-201 (463)
388 PRK05808 3-hydroxybutyryl-CoA 95.1 0.03 6.5E-07 50.0 4.6 32 9-40 5-36 (282)
389 PRK05249 soluble pyridine nucl 95.1 0.11 2.4E-06 50.1 8.6 36 7-42 175-210 (461)
390 TIGR01470 cysG_Nterm siroheme 95.1 0.04 8.8E-07 46.4 4.9 33 7-39 9-41 (205)
391 PRK14106 murD UDP-N-acetylmura 95.0 0.036 7.8E-07 53.3 5.2 34 7-40 5-38 (450)
392 PF00899 ThiF: ThiF family; I 95.0 0.038 8.3E-07 43.2 4.5 36 7-42 2-38 (135)
393 KOG2755 Oxidoreductase [Genera 95.0 0.019 4.1E-07 48.9 2.7 32 10-41 2-35 (334)
394 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.031 6.8E-07 52.8 4.4 34 8-41 4-37 (415)
395 PRK06416 dihydrolipoamide dehy 94.9 0.035 7.5E-07 53.6 4.8 35 8-42 173-207 (462)
396 PRK13512 coenzyme A disulfide 94.9 0.033 7.1E-07 53.3 4.5 35 8-42 149-183 (438)
397 cd05292 LDH_2 A subgroup of L- 94.9 0.037 8E-07 50.0 4.6 32 9-40 2-35 (308)
398 KOG2304 3-hydroxyacyl-CoA dehy 94.9 0.03 6.5E-07 46.5 3.6 38 4-41 8-45 (298)
399 TIGR03315 Se_ygfK putative sel 94.9 0.23 5E-06 51.9 10.6 34 7-40 666-701 (1012)
400 TIGR01763 MalateDH_bact malate 94.8 0.039 8.4E-07 49.8 4.5 32 8-39 2-34 (305)
401 PF01488 Shikimate_DH: Shikima 94.7 0.066 1.4E-06 41.8 5.0 34 6-39 11-45 (135)
402 TIGR03452 mycothione_red mycot 94.7 0.044 9.6E-07 52.6 4.8 34 8-41 170-203 (452)
403 PF13241 NAD_binding_7: Putati 94.6 0.026 5.7E-07 41.7 2.4 34 6-39 6-39 (103)
404 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.059 1.3E-06 43.7 4.6 34 6-39 43-77 (168)
405 PRK07531 bifunctional 3-hydrox 94.5 0.05 1.1E-06 52.8 4.7 33 8-40 5-37 (495)
406 PRK14619 NAD(P)H-dependent gly 94.5 0.061 1.3E-06 48.7 5.1 34 7-40 4-37 (308)
407 PF00056 Ldh_1_N: lactate/mala 94.5 0.071 1.5E-06 42.0 4.7 32 9-40 2-36 (141)
408 PRK12775 putative trifunctiona 94.5 0.36 7.8E-06 51.1 11.2 32 7-38 571-603 (1006)
409 TIGR03026 NDP-sugDHase nucleot 94.5 0.042 9E-07 52.0 4.0 33 9-41 2-34 (411)
410 PRK04148 hypothetical protein; 94.4 0.041 8.9E-07 42.3 3.1 34 7-41 17-50 (134)
411 COG3486 IucD Lysine/ornithine 94.4 0.57 1.2E-05 43.0 10.7 44 166-212 291-339 (436)
412 PRK14620 NAD(P)H-dependent gly 94.4 0.055 1.2E-06 49.5 4.5 32 9-40 2-33 (326)
413 KOG1346 Programmed cell death 94.4 0.061 1.3E-06 49.0 4.5 63 148-214 388-450 (659)
414 COG0446 HcaD Uncharacterized N 94.4 0.22 4.9E-06 47.0 8.8 45 164-215 64-108 (415)
415 PF00743 FMO-like: Flavin-bind 94.4 0.18 3.9E-06 49.2 8.1 33 7-39 183-215 (531)
416 PF02254 TrkA_N: TrkA-N domain 94.4 0.067 1.5E-06 40.4 4.2 31 10-40 1-31 (116)
417 PF01262 AlaDh_PNT_C: Alanine 94.4 0.07 1.5E-06 43.5 4.6 34 7-40 20-53 (168)
418 PRK07417 arogenate dehydrogena 94.2 0.052 1.1E-06 48.4 3.9 32 9-40 2-33 (279)
419 PRK15116 sulfur acceptor prote 94.2 0.083 1.8E-06 46.3 5.0 37 6-42 29-66 (268)
420 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.2 0.058 1.3E-06 52.2 4.3 33 8-40 6-38 (503)
421 PRK12809 putative oxidoreducta 94.1 0.36 7.7E-06 48.6 10.0 32 8-39 452-484 (639)
422 PRK00094 gpsA NAD(P)H-dependen 94.1 0.064 1.4E-06 49.0 4.4 32 9-40 3-34 (325)
423 PRK13984 putative oxidoreducta 94.1 0.55 1.2E-05 47.0 11.3 30 8-37 419-454 (604)
424 PF03446 NAD_binding_2: NAD bi 94.1 0.07 1.5E-06 43.2 4.1 33 8-40 2-34 (163)
425 PRK07688 thiamine/molybdopteri 94.1 0.084 1.8E-06 48.3 4.9 36 6-41 23-59 (339)
426 PRK08644 thiamine biosynthesis 94.1 0.093 2E-06 44.5 4.9 36 6-41 27-63 (212)
427 PRK12475 thiamine/molybdopteri 94.0 0.088 1.9E-06 48.1 4.9 36 6-41 23-59 (338)
428 COG0492 TrxB Thioredoxin reduc 93.9 0.81 1.8E-05 41.2 10.8 35 7-41 143-177 (305)
429 COG1252 Ndh NADH dehydrogenase 93.9 0.18 4E-06 46.8 6.9 35 8-42 156-203 (405)
430 PRK06116 glutathione reductase 93.9 0.076 1.6E-06 51.0 4.6 34 8-41 168-201 (450)
431 COG1748 LYS9 Saccharopine dehy 93.9 0.086 1.9E-06 48.6 4.6 33 8-40 2-35 (389)
432 PTZ00052 thioredoxin reductase 93.9 0.081 1.8E-06 51.5 4.8 32 8-39 183-214 (499)
433 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.13 2.9E-06 43.1 5.5 33 7-39 28-60 (200)
434 PRK08010 pyridine nucleotide-d 93.9 0.085 1.9E-06 50.5 4.9 34 8-41 159-192 (441)
435 PRK15057 UDP-glucose 6-dehydro 93.8 0.072 1.6E-06 49.7 4.1 32 9-41 2-33 (388)
436 TIGR03143 AhpF_homolog putativ 93.8 0.07 1.5E-06 52.7 4.2 34 8-41 144-177 (555)
437 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.11 2.5E-06 42.5 4.7 33 9-41 1-34 (174)
438 PRK14694 putative mercuric red 93.7 0.093 2E-06 50.7 4.9 32 8-39 179-210 (468)
439 TIGR01915 npdG NADPH-dependent 93.7 0.095 2.1E-06 44.8 4.4 31 9-39 2-33 (219)
440 PLN02353 probable UDP-glucose 93.7 0.083 1.8E-06 50.6 4.4 33 8-40 2-36 (473)
441 TIGR01438 TGR thioredoxin and 93.7 0.086 1.9E-06 51.0 4.6 32 8-39 181-212 (484)
442 TIGR02356 adenyl_thiF thiazole 93.7 0.12 2.7E-06 43.4 5.0 36 6-41 20-56 (202)
443 PRK14727 putative mercuric red 93.7 0.087 1.9E-06 51.0 4.6 32 8-39 189-220 (479)
444 cd01483 E1_enzyme_family Super 93.7 0.13 2.8E-06 40.7 4.8 34 9-42 1-35 (143)
445 PRK06223 malate dehydrogenase; 93.6 0.1 2.3E-06 47.2 4.8 33 8-40 3-36 (307)
446 PRK13748 putative mercuric red 93.6 0.088 1.9E-06 52.2 4.6 32 8-39 271-302 (561)
447 KOG2403 Succinate dehydrogenas 93.6 0.065 1.4E-06 50.7 3.3 36 7-42 55-90 (642)
448 COG1893 ApbA Ketopantoate redu 93.6 0.088 1.9E-06 47.5 4.1 32 9-40 2-33 (307)
449 PRK00066 ldh L-lactate dehydro 93.6 0.14 3E-06 46.4 5.4 34 7-40 6-41 (315)
450 PRK06567 putative bifunctional 93.6 0.42 9.1E-06 49.5 9.2 31 8-38 551-584 (1028)
451 TIGR00518 alaDH alanine dehydr 93.5 0.1 2.2E-06 48.4 4.6 33 7-39 167-199 (370)
452 PRK11730 fadB multifunctional 93.5 0.078 1.7E-06 53.8 4.1 33 8-40 314-346 (715)
453 TIGR02355 moeB molybdopterin s 93.5 0.13 2.8E-06 44.5 4.8 37 6-42 23-60 (240)
454 COG0686 Ald Alanine dehydrogen 93.4 0.07 1.5E-06 46.8 3.0 33 7-39 168-200 (371)
455 TIGR02437 FadB fatty oxidation 93.4 0.086 1.9E-06 53.4 4.1 33 8-40 314-346 (714)
456 COG1250 FadB 3-hydroxyacyl-CoA 93.4 0.11 2.3E-06 46.4 4.2 33 8-40 4-36 (307)
457 PRK05690 molybdopterin biosynt 93.3 0.15 3.1E-06 44.4 4.8 36 6-41 31-67 (245)
458 PRK08328 hypothetical protein; 93.3 0.16 3.4E-06 43.8 5.0 35 7-41 27-62 (231)
459 cd05293 LDH_1 A subgroup of L- 93.2 0.16 3.4E-06 46.0 5.0 34 7-40 3-38 (312)
460 cd01339 LDH-like_MDH L-lactate 93.1 0.11 2.5E-06 46.7 4.1 31 10-40 1-32 (300)
461 cd05311 NAD_bind_2_malic_enz N 93.1 0.15 3.2E-06 43.7 4.6 35 6-40 24-61 (226)
462 cd00757 ThiF_MoeB_HesA_family 93.1 0.16 3.5E-06 43.7 4.9 36 6-41 20-56 (228)
463 PLN02852 ferredoxin-NADP+ redu 93.0 1.6 3.4E-05 42.2 11.7 25 8-32 167-191 (491)
464 TIGR02441 fa_ox_alpha_mit fatt 93.0 0.11 2.3E-06 52.9 4.1 33 8-40 336-368 (737)
465 PTZ00117 malate dehydrogenase; 92.9 0.16 3.6E-06 46.1 4.9 34 7-40 5-39 (319)
466 PRK04690 murD UDP-N-acetylmura 92.9 0.15 3.3E-06 49.1 4.8 34 7-40 8-41 (468)
467 PRK12439 NAD(P)H-dependent gly 92.8 0.18 3.9E-06 46.4 5.0 38 1-39 1-38 (341)
468 PRK02472 murD UDP-N-acetylmura 92.8 0.17 3.6E-06 48.7 5.0 33 8-40 6-38 (447)
469 cd05191 NAD_bind_amino_acid_DH 92.8 0.3 6.4E-06 34.6 5.1 33 6-38 22-55 (86)
470 COG0771 MurD UDP-N-acetylmuram 92.7 0.14 3.1E-06 48.2 4.2 36 7-42 7-42 (448)
471 TIGR01505 tartro_sem_red 2-hyd 92.7 0.14 3E-06 46.0 4.1 32 9-40 1-32 (291)
472 PF13478 XdhC_C: XdhC Rossmann 92.7 0.13 2.9E-06 40.0 3.4 32 10-41 1-32 (136)
473 COG0287 TyrA Prephenate dehydr 92.7 0.2 4.3E-06 44.4 4.8 36 7-42 3-38 (279)
474 PRK04308 murD UDP-N-acetylmura 92.6 0.2 4.3E-06 48.1 5.2 34 8-41 6-39 (445)
475 cd05291 HicDH_like L-2-hydroxy 92.6 0.17 3.7E-06 45.7 4.5 33 9-41 2-36 (306)
476 PRK00421 murC UDP-N-acetylmura 92.5 0.16 3.5E-06 48.9 4.5 34 7-40 7-41 (461)
477 KOG4405 GDP dissociation inhib 92.4 0.2 4.3E-06 45.7 4.5 44 5-48 6-49 (547)
478 PLN02695 GDP-D-mannose-3',5'-e 92.3 0.23 5E-06 46.3 5.1 37 4-40 18-55 (370)
479 PRK12549 shikimate 5-dehydroge 92.3 0.23 5E-06 44.3 4.8 32 8-39 128-160 (284)
480 TIGR03736 PRTRC_ThiF PRTRC sys 92.3 0.24 5.3E-06 42.7 4.8 36 6-41 10-56 (244)
481 PRK02006 murD UDP-N-acetylmura 92.2 0.21 4.7E-06 48.6 5.0 33 8-40 8-40 (498)
482 PRK07502 cyclohexadienyl dehyd 92.2 0.2 4.3E-06 45.4 4.5 33 8-40 7-41 (307)
483 cd00755 YgdL_like Family of ac 92.2 0.26 5.6E-06 42.3 4.9 35 7-41 11-46 (231)
484 cd01492 Aos1_SUMO Ubiquitin ac 92.2 0.25 5.4E-06 41.4 4.7 35 7-41 21-56 (197)
485 PRK01710 murD UDP-N-acetylmura 92.2 0.21 4.5E-06 48.1 4.8 33 8-40 15-47 (458)
486 PRK11199 tyrA bifunctional cho 92.2 0.22 4.7E-06 46.4 4.8 33 7-39 98-131 (374)
487 PRK08223 hypothetical protein; 92.2 0.26 5.6E-06 43.5 4.9 37 6-42 26-63 (287)
488 cd01485 E1-1_like Ubiquitin ac 92.1 0.25 5.3E-06 41.5 4.6 36 6-41 18-54 (198)
489 cd00401 AdoHcyase S-adenosyl-L 92.1 0.2 4.4E-06 46.9 4.4 34 7-40 202-235 (413)
490 PRK11749 dihydropyrimidine deh 92.1 0.2 4.4E-06 48.2 4.6 34 7-40 273-307 (457)
491 PRK11154 fadJ multifunctional 92.1 0.16 3.4E-06 51.6 3.9 33 8-40 310-343 (708)
492 TIGR02440 FadJ fatty oxidation 92.1 0.17 3.7E-06 51.3 4.1 33 8-40 305-338 (699)
493 PF03807 F420_oxidored: NADP o 92.0 0.25 5.3E-06 35.8 4.0 32 9-40 1-36 (96)
494 cd05290 LDH_3 A subgroup of L- 91.9 0.25 5.5E-06 44.5 4.7 32 9-40 1-34 (307)
495 PRK12828 short chain dehydroge 91.9 0.3 6.5E-06 42.1 5.1 40 1-40 1-41 (239)
496 PRK09424 pntA NAD(P) transhydr 91.9 0.2 4.4E-06 48.2 4.2 34 7-40 165-198 (509)
497 PTZ00142 6-phosphogluconate de 91.8 0.18 3.8E-06 48.3 3.8 34 8-41 2-35 (470)
498 PRK06505 enoyl-(acyl carrier p 91.8 0.28 6.1E-06 43.5 4.9 39 1-39 1-42 (271)
499 PLN02602 lactate dehydrogenase 91.8 0.31 6.8E-06 44.7 5.2 33 8-40 38-72 (350)
500 TIGR02853 spore_dpaA dipicolin 91.8 0.25 5.4E-06 44.1 4.4 34 7-40 151-184 (287)
No 1
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=1e-48 Score=366.19 Aligned_cols=375 Identities=45% Similarity=0.776 Sum_probs=299.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY 87 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (413)
+||+|||||++|+++|++|+++|++|+|||+....++.+++....+.++..+....+.++..++.++|+++.+..+.+++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 68999999999999999999999999999998765444555556666666666666678889999999999988887776
Q ss_pred eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG 167 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (413)
...+.+.+...+.+.++...+.++..+.+.++++.+++.+++|. ++......+++.+.+++++|..+++.|.+.+.+.|
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~-l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g 159 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPN-IRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG 159 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCC-CcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence 67777776544445667777778888999999999999999998 66555667899999999999999999999999999
Q ss_pred CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCcccc
Q 015072 168 AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247 (413)
Q Consensus 168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (413)
++++.+++|+++.. + ++.+.|.+++++ +.+|.||+|+|+|+..+.+.+ +..+|+.+.++++..++........+
T Consensus 160 ~~~~~~~~V~~i~~--~--~~~~~v~~~~~~-i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (380)
T TIGR01377 160 ATVRDGTKVVEIEP--T--ELLVTVKTTKGS-YQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGSYGV 233 (380)
T ss_pred CEEECCCeEEEEEe--c--CCeEEEEeCCCE-EEeCEEEEecCcchHHHhhhc-ccCCCceEEEEEEEEEecCCccccCc
Confidence 99999999999988 6 455777777774 999999999999999888877 88899999999988887543221111
Q ss_pred ccCCCCceEEecCC-CeeEecCCCCCCCeEEEEeCCCCcCCCCCCCC---CCCcchHHHHHHHHhhcCCCCCCCCCceee
Q 015072 248 AVGGDFPSFASYGD-PHVYGTPSLEYPGLIKIALHRGYLCDPDRRPW---GPGPLLDSLKELIQGRFAGRVDSSGPAATQ 323 (413)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 323 (413)
. ..+|.+...+. ..+|..|..+..+++.++...+...++....+ .....++.+.+.+.+++|.+.+. ....|
T Consensus 234 ~--~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~--~~~~~ 309 (380)
T TIGR01377 234 S--QAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGE--PKKGE 309 (380)
T ss_pred c--CCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCC--cceee
Confidence 1 13566554432 35888888655566655543332223322222 11226888899999999999853 46779
Q ss_pred eeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCCC
Q 015072 324 LCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPK 396 (413)
Q Consensus 324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~~ 396 (413)
.|++++|||+.|+||++|.. +|+|+++||+|+|+++||++|+++|++|.++++ ..++++|+|+||..+++
T Consensus 310 ~~~~~~t~D~~piIg~~p~~--~~l~va~G~~g~G~~~~p~~g~~la~li~~~~~-~~~~~~f~~~Rf~~~~~ 379 (380)
T TIGR01377 310 VCMYTNTPDEHFVIDLHPKY--DNVVIGAGFSGHGFKLAPVVGKILAELAMKLKP-SYDLAIFSLNRFALKKK 379 (380)
T ss_pred EEEeccCCCCCeeeecCCCC--CCEEEEecCCccceeccHHHHHHHHHHHhcCCC-CCCccccChhhcccCCC
Confidence 99999999999999999988 999999999999999999999999999996665 67899999999988764
No 2
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=7.7e-49 Score=331.63 Aligned_cols=389 Identities=38% Similarity=0.627 Sum_probs=332.8
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS 80 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (413)
|..|.+..|++|||||+-|+++|++|+++|.+++++|+-+.++..++|++.+.+++..|.+..+..+..++.+.|.++..
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 33456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHH
Q 015072 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQ 160 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
..+..+....+.+.....+...+......++..++..+.++.++++++||..+.+++.+.++..+.+|++++.+-++.+.
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 88887766666666666666778888888889999999999999999999548889999999999999999999999999
Q ss_pred HHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEe
Q 015072 161 TLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239 (413)
Q Consensus 161 ~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~ 239 (413)
..+++.|+.++.+..|+.++. .+ .+..+.|.|.+|..+.|+++|+|+|+|.+.+++...++..|+.+.+-.+-+|+.
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~--~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk~ 238 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKF--VDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWKT 238 (399)
T ss_pred HHHHHcCeEEecCcceeeEee--ccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhhee
Confidence 999999999999999999986 43 246788999999999999999999999999999866889999999999888886
Q ss_pred cCCCccccccCCCCceEEecCCC--eeEecCCCCCCCeEEEEeCCCC---cCCCCCCCCCCCc-chHHHHHHHHhhcCCC
Q 015072 240 KEGDEADYAVGGDFPSFASYGDP--HVYGTPSLEYPGLIKIALHRGY---LCDPDRRPWGPGP-LLDSLKELIQGRFAGR 313 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~~~~p~~ 313 (413)
..+.+.-+..+...++|...++. +.|..|..+++|++....+.+. ..+|+...+.+.. .++...+.++++.|.+
T Consensus 239 ~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l 318 (399)
T KOG2820|consen 239 KKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDL 318 (399)
T ss_pred ecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccc
Confidence 65544334445567777777777 7899999999999888887663 4455555555544 5555666677888999
Q ss_pred CCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCC-CccccccccccccC
Q 015072 314 VDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEA-QGVELRHFRIARFK 392 (413)
Q Consensus 314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~-~~~~~~~~~~~R~~ 392 (413)
.+. .++....|++..|||...+|+.+|.. .|+|+++|.+|||+.++|.+|+++|+++++..+ ...+.+.|+.+||.
T Consensus 319 ~~~-~p~~t~~C~YT~TpD~~FviD~~P~~--~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e~~~d~~~f~~~rf~ 395 (399)
T KOG2820|consen 319 DDR-SPINTKMCMYTDTPDANFVIDKHPQY--DNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSEEWVDAWRFREDRFE 395 (399)
T ss_pred cCC-CcceeeEEEeeCCCCcCeeeecCCCc--ccEEEecCCCCcceeecchHHHHHHHHhhhcccccceehhhhhhhhcc
Confidence 874 67888999999999999999999998 899999999999999999999999999983333 25667888888886
Q ss_pred CC
Q 015072 393 EN 394 (413)
Q Consensus 393 ~~ 394 (413)
..
T Consensus 396 ~~ 397 (399)
T KOG2820|consen 396 SE 397 (399)
T ss_pred cc
Confidence 54
No 3
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=5.6e-46 Score=347.13 Aligned_cols=367 Identities=35% Similarity=0.621 Sum_probs=287.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC-CccccchHHHHHHHHHHHHHhcCCe
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
++||+|||||++|+++|++|+++|++|+|||++..+++.+++++..+.++..+. ...+.++...+.+.|.++.+..+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999999999998776545566666666655443 3456678889999999998888877
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
++...+.+.+.....+.++...+.+++.+++.++++.+++.+++|. ++......+++.+.+++++|.+++..+.+.+.+
T Consensus 83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~-l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~ 161 (376)
T PRK11259 83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLARE 161 (376)
T ss_pred cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-CcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence 6667787777655555556667777888999999999999999998 655556678999999999999999999999999
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCcc
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~ 245 (413)
.|++++++++|+++.. + ++.+.|++++|+ +.+|+||+|+|+|+..++..+ .+|+.+.+++++.++....
T Consensus 162 ~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~a~~vV~A~G~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~--- 230 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--D--GDGVTVTTADGT-YEAKKLVVSAGAWVKDLLPPL---ELPLTPVRQVLAWFQADGR--- 230 (376)
T ss_pred CCCEEECCCEEEEEEe--e--CCeEEEEeCCCE-EEeeEEEEecCcchhhhcccc---cCCceEEEEEEEEEecCCc---
Confidence 9999999999999998 6 456778888885 999999999999998887753 5789999999988764321
Q ss_pred ccccCCCCceEEe--cCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCC--CcchHHHHHHHHhhcCCCCCCCCCc
Q 015072 246 DYAVGGDFPSFAS--YGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGP--GPLLDSLKELIQGRFAGRVDSSGPA 320 (413)
Q Consensus 246 ~~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~p~~~~~~~~~ 320 (413)
+.....+|.+.. ..+..+|.+|..+.++++.++...+. ..++...+... ....+.+.+.+.++||.+.+ ..
T Consensus 231 -~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~---~~ 306 (376)
T PRK11259 231 -YSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP---CL 306 (376)
T ss_pred -cCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc---cc
Confidence 111112454432 22334788888664444444433211 11222211111 22688899999999998774 57
Q ss_pred eeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccC
Q 015072 321 ATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK 392 (413)
Q Consensus 321 ~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~ 392 (413)
..|+|+|++|||+.|+||++|.. +|+|+++||+|+|+++||++|+.+|++|+++++ ..+++.|+|+||.
T Consensus 307 ~~~~g~~~~t~D~~P~ig~~~~~--~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~~-~~~~~~~~~~Rf~ 375 (376)
T PRK11259 307 RGAACTYTNTPDEHFIIDTLPGH--PNVLVASGCSGHGFKFASVLGEILADLAQDGTS-DFDLSPFSLSRFA 375 (376)
T ss_pred cceEEecccCCCCCceeecCCCC--CCEEEEecccchhhhccHHHHHHHHHHHhcCCC-CCCcCccCccccc
Confidence 78999999999999999999987 999999999999999999999999999996664 6789999999986
No 4
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1.9e-44 Score=339.64 Aligned_cols=366 Identities=20% Similarity=0.226 Sum_probs=280.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (413)
..+||+|||||++|+++|++|+++ |. +|+|+|+...+ .++|..+.+.++..+..+....+...+.+.|.++.+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~--~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~ 106 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG--GGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLN 106 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc--CcccccccceeeecccCccccHHHHHHHHHHHHHHHHhC
Confidence 568999999999999999999996 85 99999998755 357777788888776655566788889999999999888
Q ss_pred Cee-EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCC-----CCeEEEEecCCeeecHHHH
Q 015072 84 YKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIP-----ENWVGVTTELGGVIKPTKA 155 (413)
Q Consensus 84 ~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~ 155 (413)
.++ +.+.+.+.+...+ .+.+....+.++..|++.++++.+++.+++|. ++.. ....+++.+.++.++|..+
T Consensus 107 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~~~~~~~~~~~ga~~~~~~g~v~p~~l 185 (407)
T TIGR01373 107 YNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPI-LDFSPDARFPVVGGLLQRRGGTARHDAV 185 (407)
T ss_pred CCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCC-CccccccccceeEEEEcCCCCcCCHHHH
Confidence 776 5567777765432 33445556666778999999999999999998 6543 2356788899999999999
Q ss_pred HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072 156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC 235 (413)
Q Consensus 156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~ 235 (413)
+..|.+.+.+.|++++.+++|+++.. .+++..+.|++++|+ +.+++||+|+|+|+..+.+.+ +..+|+.+.+++++
T Consensus 186 ~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~~~~v~t~~g~-i~a~~vVvaagg~~~~l~~~~-g~~~~~~~~~~~~~ 261 (407)
T TIGR01373 186 AWGYARGADRRGVDIIQNCEVTGFIR--RDGGRVIGVETTRGF-IGAKKVGVAVAGHSSVVAAMA-GFRLPIESHPLQAL 261 (407)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEeCCce-EECCEEEECCChhhHHHHHHc-CCCCCcCcccceEE
Confidence 99999999999999999999999986 522234567787885 999999999999998877655 88889999888866
Q ss_pred EEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCC
Q 015072 236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVD 315 (413)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~ 315 (413)
..+ ... .+ .+......+..+|++|..+ |.++++..... .+........+..+.+.+.+.+++|.+.+
T Consensus 262 ~~~---~~~-~~-----~~~~~~~~~~~~y~~p~~~--g~~~ig~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~P~l~~ 328 (407)
T TIGR01373 262 VSE---PLK-PI-----IDTVVMSNAVHFYVSQSDK--GELVIGGGIDG--YNSYAQRGNLPTLEHVLAAILEMFPILSR 328 (407)
T ss_pred Eec---CCC-CC-----cCCeEEeCCCceEEEEcCC--ceEEEecCCCC--CCccCcCCCHHHHHHHHHHHHHhCCCcCC
Confidence 443 111 11 1222222334578888753 54444432110 01111111122678889999999999986
Q ss_pred CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCC
Q 015072 316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENP 395 (413)
Q Consensus 316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~ 395 (413)
. .+...|+|.|++|+|+.|+||++| . +|+|+++||+|+|+++||++|+++|++|+++++ ..+++.|+|.||..+.
T Consensus 329 ~-~~~~~w~G~~~~t~D~~PiIg~~~-~--~gl~~a~G~~g~G~~~ap~~G~~la~li~~~~~-~~~~~~f~~~Rf~~~~ 403 (407)
T TIGR01373 329 V-RMLRSWGGIVDVTPDGSPIIGKTP-L--PNLYLNCGWGTGGFKATPASGTVFAHTLARGEP-HDINAPFTLDRFHSGR 403 (407)
T ss_pred C-CeEEEeccccccCCCCCceeCCCC-C--CCeEEEeccCCcchhhchHHHHHHHHHHhCCCC-CCCCcccCHhHhccCC
Confidence 4 567899999999999999999998 3 899999999999999999999999999996665 5578999999997644
Q ss_pred C
Q 015072 396 K 396 (413)
Q Consensus 396 ~ 396 (413)
.
T Consensus 404 ~ 404 (407)
T TIGR01373 404 L 404 (407)
T ss_pred c
Confidence 3
No 5
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=1.3e-43 Score=335.36 Aligned_cols=358 Identities=18% Similarity=0.204 Sum_probs=264.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc--------------------------
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-------------------------- 62 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-------------------------- 62 (413)
||+|||||++|+++|++|+++|++|+|+|++...+ .++|..++|.++..+..+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~-~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA-LETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD 80 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh-hhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCC
Confidence 79999999999999999999999999999975432 466777777766543211
Q ss_pred --------------------------cccchHHHHHHHHHHHHHhcCCee-EeeeeeeeeCCCC--hHHHHHHHHHHHhC
Q 015072 63 --------------------------YYHPMVLESSLLWEQAQSEIGYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKN 113 (413)
Q Consensus 63 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 113 (413)
.+.++...+.+.|.++.+..++++ +.+.+.+.+...+ .+.+.+..+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~ 160 (416)
T PRK00711 81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEA 160 (416)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHc
Confidence 122344566788888888888876 4455666665432 23455566777788
Q ss_pred CCCccccCHHHHHHhcCCcccC--CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE
Q 015072 114 SVPHQVLDCRQVLQKYSGRIEI--PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT 191 (413)
Q Consensus 114 g~~~~~l~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~ 191 (413)
|+++++++.+++.+.+|. +.. .....+++.+.++.++|..+++.|.+.+.+.|++|+++++|+++.. +++ ..+.
T Consensus 161 g~~~~~l~~~e~~~~~P~-l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~-~~~~ 236 (416)
T PRK00711 161 GVPYELLDRDELAAVEPA-LAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGG-RITG 236 (416)
T ss_pred CCCceecCHHHHHHhCCC-ccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCC-EEEE
Confidence 999999999999999997 531 3456688999999999999999999999999999999999999988 622 2234
Q ss_pred EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCC
Q 015072 192 VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLE 271 (413)
Q Consensus 192 v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 271 (413)
+++++++ +.||+||+|+|+|+..+++.+ +..+|+.|.+++++....++... .|..........+..+..+
T Consensus 237 v~t~~~~-~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p~rg~~~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~ 306 (416)
T PRK00711 237 VQTGGGV-ITADAYVVALGSYSTALLKPL-GVDIPVYPLKGYSLTVPITDEDR--------APVSTVLDETYKIAITRFD 306 (416)
T ss_pred EEeCCcE-EeCCEEEECCCcchHHHHHHh-CCCcccCCccceEEEEecCCCCC--------CCceeEEecccCEEEeecC
Confidence 6666664 999999999999999888877 78889999999877654332211 1221111111122333322
Q ss_pred CCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEE
Q 015072 272 YPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVA 351 (413)
Q Consensus 272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~ 351 (413)
+.++.++.......+.. ...+..+.+.+.+.++||.+.+. .+...|+|+|++|+|+.|+||+++. +|+|++
T Consensus 307 -~~~~iG~~~~~~~~~~~----~~~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~t~D~~PiIG~~~~---~gl~~a 377 (416)
T PRK00711 307 -DRIRVGGMAEIVGFDLR----LDPARRETLEMVVRDLFPGGGDL-SQATFWTGLRPMTPDGTPIVGATRY---KNLWLN 377 (416)
T ss_pred -CceEEEEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCcccc-cccceeeccCCCCCCCCCEeCCcCC---CCEEEe
Confidence 23333332111111111 11126778888899999998864 5678899999999999999999873 899999
Q ss_pred eCCCccccccchHHHHHHHHHHHcCCCCcccccccccccc
Q 015072 352 GGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391 (413)
Q Consensus 352 ~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~ 391 (413)
+||+|+|+++||++|+++|++|.++.. +.+++.|+|+||
T Consensus 378 ~G~~g~G~~~ap~~g~~la~li~g~~~-~~~~~~f~~~Rf 416 (416)
T PRK00711 378 TGHGTLGWTMACGSGQLLADLISGRKP-AIDADDLSVARY 416 (416)
T ss_pred cCCchhhhhhhhhHHHHHHHHHcCCCC-CCCccccCccCC
Confidence 999999999999999999999995554 678999999998
No 6
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=312.00 Aligned_cols=348 Identities=14% Similarity=0.132 Sum_probs=252.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC--------------------------
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-------------------------- 61 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-------------------------- 61 (413)
+||+|||||++|+++|++|+++|++|+|+|+++..+ .++|..++|.+......
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA-METSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNP 80 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC-cCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecC
Confidence 589999999999999999999999999999987543 45666666766542211
Q ss_pred ------------------------ccccchHHHHHHHHHHHHHhcCCee-EeeeeeeeeCCCC--hHHHHHHHHHHHhCC
Q 015072 62 ------------------------DYYHPMVLESSLLWEQAQSEIGYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNS 114 (413)
Q Consensus 62 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g 114 (413)
....++..++.+.|.++.+..++++ +.+.+.+.+.... .+.+++..+.++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g 160 (410)
T PRK12409 81 KPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGG 160 (410)
T ss_pred CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcC
Confidence 0113455667788888888888876 4456777664322 233455666677788
Q ss_pred CCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe
Q 015072 115 VPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT 194 (413)
Q Consensus 115 ~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~ 194 (413)
++.+.++++++.+++|. +. .....+++.+.++.+++..++..|.+.+++.|++++++++|+++.. + ++.+.+.+
T Consensus 161 ~~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~--~--~~~~~v~~ 234 (410)
T PRK12409 161 LERRAVTPEEMRAIEPT-LT-GEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKT--D--GGGVVLTV 234 (410)
T ss_pred CCeEEcCHHHHHHhCCC-Cc-cccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEE
Confidence 88899999999999998 54 3456788899999999999999999999999999999999999988 6 34455543
Q ss_pred CCc-----cEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCCCceEE-ecCCCeeEecC
Q 015072 195 SSG-----EEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFA-SYGDPHVYGTP 268 (413)
Q Consensus 195 ~~g-----~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p 268 (413)
.++ .+++||+||+|+|+|+..+.+.+ +..+|+.|.+++++.+++.+.... ...|.+. ...+.+++..+
T Consensus 235 ~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p~~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~ 308 (410)
T PRK12409 235 QPSAEHPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYPVKGYSITVNLDDEASR-----AAAPWVSLLDDSAKIVTSR 308 (410)
T ss_pred EcCCCCccceEecCEEEECCCcChHHHHHHh-CCCCccccCCceEEEeecCCcccc-----ccCCceeeeecCCcEEEEe
Confidence 322 25999999999999999888876 778899999999877664332111 1133222 11222222212
Q ss_pred CCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCE
Q 015072 269 SLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDV 348 (413)
Q Consensus 269 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~ 348 (413)
. ..+.++.+++......++. ...+.++.+.+.+.++||.+.+. .+..|+|+|++|+|++|+||+.+ . +|+
T Consensus 309 ~-~~~~~~igg~~~~~~~~~~----~~~~~~~~l~~~~~~~~P~l~~~--~~~~w~G~r~~t~D~~PiiG~~~-~--~~l 378 (410)
T PRK12409 309 L-GADRFRVAGTAEFNGYNRD----IRADRIRPLVDWVRRNFPDVSTR--RVVPWAGLRPMMPNMMPRVGRGR-R--PGV 378 (410)
T ss_pred c-CCCcEEEEEEEEecCCCCC----CCHHHHHHHHHHHHHhCCCCCcc--ccceecccCCCCCCCCCeeCCCC-C--CCE
Confidence 1 1223334433211111111 11126788889999999999864 34479999999999999999876 3 899
Q ss_pred EEEeCCCccccccchHHHHHHHHHHHcCCC
Q 015072 349 VVAGGFSGHGFKMAPVVGRILADLVLSGEA 378 (413)
Q Consensus 349 ~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~ 378 (413)
|+++|++++|+++||++|+++|++|+++.+
T Consensus 379 ~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~ 408 (410)
T PRK12409 379 FYNTGHGHLGWTLSAATADLVAQVVAQKLP 408 (410)
T ss_pred EEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence 999999999999999999999999985554
No 7
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=5.1e-41 Score=312.20 Aligned_cols=345 Identities=30% Similarity=0.461 Sum_probs=266.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecc---cCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT---YPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
||+|||||++|+++|++|+++|++|+|||++..+ .++|..+.+.++.. .......++...+.+.|+++.+..+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~--~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG--SGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP 78 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT--SSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc--ccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence 7999999999999999999999999999999554 36677777888776 455567788999999999999988877
Q ss_pred eE-eeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072 86 VY-FKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 86 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
.. .+.+.+.+... +.+.++...+.++..+.+.+.++.+++.+.+|. +. +....+++.+.++++++.++++.|.+.
T Consensus 79 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 79 VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPF-LN-PRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT-SS-TTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcc-cc-cchhhhhcccccccccccchhhhhHHH
Confidence 64 46677766533 233456777888888999999999999999998 65 667889999999999999999999999
Q ss_pred HHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072 163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE 241 (413)
Q Consensus 163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~ 241 (413)
+++.|++++.+++|++|.. + ++.+. |.+++|+ ++||+||+|+|+|+..+++.+ +..+|+.+.+++++.++...
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~--~--~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 230 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDV--D--GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL-GLDLPLRPVRGQVLVLEPPE 230 (358)
T ss_dssp HHHTT-EEEESEEEEEEEE--E--TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT-TTSSTEEEEEEEEEEEEGCC
T ss_pred HHHhhhhccccccccchhh--c--ccccccccccccc-cccceeEecccccceeeeecc-cccccccccceEEEEEccCC
Confidence 9999999999999999999 7 45666 9999998 999999999999999988877 77779999999999888433
Q ss_pred CCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCC------CCCcchHHHHHHHHhhcCCCCC
Q 015072 242 GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPW------GPGPLLDSLKELIQGRFAGRVD 315 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~p~~~~ 315 (413)
........ ...........+|+.|.. ++++.+.........+..... ...+ ++.+.+.+.+++|.+.+
T Consensus 231 ~~~~~~~~---~~~~~~~~~~~~~~~p~~--g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~ 304 (358)
T PF01266_consen 231 SPLAPAIL---FPPVIFGPSDGVYIRPRP--GGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGD 304 (358)
T ss_dssp SGSSSEEE---EEEECESSCTEEEEEEET--TEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGG
T ss_pred cccccccc---cccccccccccceecccc--cccccccccccccccccccccccccccccHH-HHHhHHHHHHHHHHhhh
Confidence 22100000 011112223457777775 233333222111111111100 0001 46899999999999986
Q ss_pred CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072 316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL 372 (413)
Q Consensus 316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~ 372 (413)
. .+...|+|+|++|+|+.|+||++|.. +|+|+++|++|+|+++||++|+++|++
T Consensus 305 ~-~v~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 305 A-EVVRSWAGIRPFTPDGRPIIGELPGS--PNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp S-EEEEEEEEEEEEETTSECEEEEESSE--EEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred c-cccccccceeeeccCCCeeeeecCCC--CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 4 55678999999999999999999988 999999999999999999999999985
No 8
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=3.9e-40 Score=326.19 Aligned_cols=360 Identities=18% Similarity=0.177 Sum_probs=257.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccchHH----HHHHHHHHHHH
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVL----ESSLLWEQAQS 80 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~ 80 (413)
.+||+|||||++|+++|++|+++|++|+|+|++...+ .++|+.+.|.+.+.+.... ..++.. .+.+.|.++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~- 337 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA-QGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP- 337 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc-ccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 3699999999999999999999999999999985443 3567777777766543221 223332 4667788776
Q ss_pred hcCCee-EeeeeeeeeCCCChHHHHHHHHHHHhC--CCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072 81 EIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKN--SVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS 157 (413)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+.+.++ +...+.+.+...+ +..+...+..... +...+.++.+++.+.++. .....+++.+.+++++|..+++
T Consensus 338 ~~~~~~~~~~~G~l~~a~~~-~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~~g~~~p~~G~v~p~~l~~ 412 (662)
T PRK01747 338 AAGVAFDHDWCGVLQLAWDE-KSAEKIAKMLALGLPAELARALDAEEAEELAGL----PVPCGGIFYPQGGWLCPAELCR 412 (662)
T ss_pred hcCCCCCCCCCceEEeecCc-hHHHHHHHHHhccCchHhhhhCCHHHHHHHhCC----CCCCCcEEeCCCCeeCHHHHHH
Confidence 445554 3345666554332 2222222222221 233578888888887764 3456789999999999999999
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEE
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYW 237 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~ 237 (413)
.|.+.+.+ |++++++++|+++.. . ++.+.|.+++|..+++|.||+|+|+|+..+... ..+|+.++||+++.+
T Consensus 413 aL~~~a~~-Gv~i~~~~~V~~i~~--~--~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~---~~lpl~p~RGqv~~~ 484 (662)
T PRK01747 413 ALLALAGQ-QLTIHFGHEVARLER--E--DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT---AHLPLYSVRGQVSHL 484 (662)
T ss_pred HHHHhccc-CcEEEeCCEeeEEEE--e--CCEEEEEECCCcEEECCEEEECCCCCccccccc---cCCCcccccceEEee
Confidence 99999988 999999999999988 6 456778888887678999999999999877653 257999999999877
Q ss_pred EecCCCccccccCCCCceEEecCCCeeEecC-CCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCC---
Q 015072 238 RIKEGDEADYAVGGDFPSFASYGDPHVYGTP-SLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGR--- 313 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~--- 313 (413)
+...... . .+..... ..|++| .. +|.+.+|.+... +....+. ..+..+.+.+.+.+++|.+
T Consensus 485 ~~~~~~~--~-----~~~~~~~---~~Y~~p~~~--~g~~~iGat~~~--~~~~~~~-~~~~~~~~~~~l~~~~P~l~~~ 549 (662)
T PRK01747 485 PTTPALS--A-----LKQVLCY---DGYLTPQPA--NGTHCIGASYDR--DDTDTAF-READHQENLERLAECLPQALWA 549 (662)
T ss_pred cCCcccc--c-----cCceeEC---CceeCCCCC--CCceEeCcccCC--CCCCCCC-CHHHHHHHHHHHHHhCCCchhh
Confidence 6332111 0 1111121 258888 43 355554442211 1111111 1125667778899999976
Q ss_pred --CCCCCCceeeeeeeeccCCCCeEEec----------------------CCCCCCCCEEEEeCCCccccccchHHHHHH
Q 015072 314 --VDSSGPAATQLCMYSMTPDKDFVIDF----------------------LGGELGEDVVVAGGFSGHGFKMAPVVGRIL 369 (413)
Q Consensus 314 --~~~~~~~~~~~g~~~~t~d~~p~ig~----------------------~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~ 369 (413)
.+ ..+...|+|+|++|+|++|+||+ +|.. +|+|+++||||+|+++||++|+++
T Consensus 550 ~~~~-~~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~--~gl~v~~G~gs~Gl~~ap~~a~~l 626 (662)
T PRK01747 550 KEVD-VSALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRL--PGLYVAGALGSRGLCSAPLGAELL 626 (662)
T ss_pred hccC-ccccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCC--CCeEEEecccccHHHHHHHHHHHH
Confidence 33 24678899999999999999999 4555 899999999999999999999999
Q ss_pred HHHHHcCCCCccc---cccccccccCCCCCCCcc
Q 015072 370 ADLVLSGEAQGVE---LRHFRIARFKENPKGNVK 400 (413)
Q Consensus 370 a~~i~~~~~~~~~---~~~~~~~R~~~~~~~~~~ 400 (413)
|++|+ |++.+.+ ++.|+|.||..+++.+.+
T Consensus 627 A~li~-g~~~p~~~~~~~~~~p~Rf~~r~l~~~~ 659 (662)
T PRK01747 627 ASQIE-GEPLPLERDLLAALHPNRFWVRKLLKGK 659 (662)
T ss_pred HHHHh-CCCCCCCHHHHHhhChHHHHHHHHhcCC
Confidence 99998 5553433 688999999888776644
No 9
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=3.1e-39 Score=307.26 Aligned_cols=349 Identities=17% Similarity=0.160 Sum_probs=243.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecc----------cCCccccchHHHH--
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRAT----------YPEDYYHPMVLES-- 71 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~----------~~~~~~~~~~~~~-- 71 (413)
.++||+|||||++|+++|++|+++ |.+|+|+|++..+ .++|..+.|.+... +......++...+
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g--~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 100 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG--AGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQ 100 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc--cccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHH
Confidence 458999999999999999999998 8999999998764 46666666654321 1111222333333
Q ss_pred -HHHHHHHHHhcCCeeE-eeeeeeeeCCC--ChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecC
Q 015072 72 -SLLWEQAQSEIGYKVY-FKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTEL 146 (413)
Q Consensus 72 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 146 (413)
.+.+.++.++.++++. ...+.+.+... +...++...+.+++.|++ +++++.+++.++++. .....+++.+.
T Consensus 101 ~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~----~~~~~g~~~~~ 176 (460)
T TIGR03329 101 AVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS----ARHLEGFYSPV 176 (460)
T ss_pred HHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC----CcceEEEEeCC
Confidence 3334455566777763 44666665433 233455666677778876 589999999998886 34567899999
Q ss_pred CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072 147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP 226 (413)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p 226 (413)
++.+||.++++.|.+.+++.|++|+++++|++|.. . +.+.|++++|+ +.||+||+|+|+|+..+++.+ + .+
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~---~~~~v~t~~g~-v~A~~VV~Atga~s~~l~~~~-~--~~ 247 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G---QPAVVRTPDGQ-VTADKVVLALNAWMASHFPQF-E--RS 247 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C---CceEEEeCCcE-EECCEEEEcccccccccChhh-c--Ce
Confidence 99999999999999999999999999999999977 4 44678888786 999999999999998887755 3 35
Q ss_pred eeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCC-C----CcCCCCCCCCCCCcchHH
Q 015072 227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHR-G----YLCDPDRRPWGPGPLLDS 301 (413)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 301 (413)
+.+.+++++..+............... .+........|+++..+ |.++++... . ...++... ......+.
T Consensus 248 ~~p~~~~~~~t~pl~~~~~~~~~~~~~-~~~d~~~~~~y~r~~~d--grll~G~~~~~~~~~~~~~~~~~--~~~~~~~~ 322 (460)
T TIGR03329 248 IAIVSSDMVITEPAPDLLAATGLDHGT-SVLDSRIFVHYYRSTPD--GRLMLGKGGNTFAYGGRMLPVFN--QPSPYEAL 322 (460)
T ss_pred EEEeccceEecCCCcHHHHhhcCCCCc-eEecchhhhhheeECCC--CcEEEcCCccccccCcccccccC--CchHHHHH
Confidence 566666665443111100000000001 11111111246666543 434443211 1 01111111 11114678
Q ss_pred HHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCC
Q 015072 302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGE 377 (413)
Q Consensus 302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~ 377 (413)
|.+.+.++||.+.+. .+...|+|++++|+|++|+||+++.. +|+|+++||+|+|+++|+++|+++|++|+++.
T Consensus 323 l~~~~~~~fP~L~~~-~i~~~W~G~~~~t~D~~P~iG~~~~~--~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 323 LTRSLRKFFPALAEV-PIAASWNGPSDRSVTGLPFFGRLNGQ--PNVFYGFGYSGNGVAPSRMGGQILSSLVLGLD 395 (460)
T ss_pred HHHHHHHhCCCcCCC-eeeEEEeceeCCCCCCCceeeeecCC--CCEEEEeCcCCCChhHHHHHHHHHHHHhcCCC
Confidence 889999999999874 56788999999999999999999876 99999999999999999999999999998443
No 10
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=297.99 Aligned_cols=366 Identities=27% Similarity=0.383 Sum_probs=269.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc----cccchHHHHHHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED----YYHPMVLESSLLWEQAQS 80 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 80 (413)
.+++||+|||||++|+++|++|+++|.+|+|+|+...++ +++..+.+.+...+... ....+...+..+|+.+..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE 79 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC--cchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHH
Confidence 356899999999999999999999999999999988765 45555555555444432 356677788889999888
Q ss_pred hcCCee-EeeeeeeeeCCCCh----HHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHH
Q 015072 81 EIGYKV-YFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKA 155 (413)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
...... +...+.+.+..... .......+..+......+.++..+..+..|. +.......+++.+.+++++|..+
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~a~~~~~~~~~~p~~~ 158 (387)
T COG0665 80 ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPA-LGPDFVCGGLFDPTGGHLDPRLL 158 (387)
T ss_pred HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCC-CCcccceeeEecCCCCcCCHHHH
Confidence 776552 34444444433322 2334444455555444467888889899998 66555677899999999999999
Q ss_pred HHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcC-CCcceeEEEEE
Q 015072 156 VSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISG-LELPIQAVETS 233 (413)
Q Consensus 156 ~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g-~~~p~~~~~~~ 233 (413)
++.+.+.+.+.| ..+..++.|..+.. . + ..+.|.+.+|+ +.|++||+|+|+|+..+.... + ..+|+.|.+++
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~~~~~~~--~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~-~~~~~~~~p~~~~ 232 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLER--D-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATL-GELPLPLRPVRGQ 232 (387)
T ss_pred HHHHHHHHHhcCCeEEEccceEEEEEe--c-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhc-CCCcCccccccce
Confidence 999999999999 56666889999888 5 2 67889999998 999999999999999998877 6 67899999999
Q ss_pred EEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCc--CCCCCCCCCCCc-chHHHHHHHHhhc
Q 015072 234 VCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYL--CDPDRRPWGPGP-LLDSLKELIQGRF 310 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~~~~ 310 (413)
++..+..+..... ...+..........|++|..+ +.+.++...... .+.+.. ..+ ....+.+.+.+++
T Consensus 233 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~y~~~~~~--g~~~~g~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~ 303 (387)
T COG0665 233 ALTTEPPEGLLAD----GLAPVVLVVDDGGGYIRPRGD--GRLRVGGTDEEGGDDPSDPE---REDLVIAELLRVARALL 303 (387)
T ss_pred EEEecCCCccccc----cccceEEEecCCceEEEEcCC--CcEEEeecccccCCCCcccc---CcchhHHHHHHHHHHhC
Confidence 9988744422110 001112233334578888733 545444422111 111111 111 3568999999999
Q ss_pred CCCCCCCCCceeeeeeeecc-CCCCeEEec-CCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccc
Q 015072 311 AGRVDSSGPAATQLCMYSMT-PDKDFVIDF-LGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRI 388 (413)
Q Consensus 311 p~~~~~~~~~~~~~g~~~~t-~d~~p~ig~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~ 388 (413)
|.+.+. .....|+|+|++| ||++|+||+ .+ . +|+|+++||+++|++++|++|+++|++|+++.. ..+...+.+
T Consensus 304 P~l~~~-~~~~~w~g~~~~t~pd~~P~iG~~~~-~--~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~~~-~~~~~~~~~ 378 (387)
T COG0665 304 PGLADA-GIEAAWAGLRPPTTPDGLPVIGRAAP-L--PNLYVATGHGGHGFTLAPALGRLLADLILGGEP-ELDLRPLLL 378 (387)
T ss_pred cccccc-ccceeeeccccCCCCCCCceeCCCCC-C--CCEEEEecCCCcChhhccHHHHHHHHHHcCCCC-CCCcccccc
Confidence 999974 5667899999988 999999995 77 7 999999999999999999999999999994444 566777777
Q ss_pred cccCC
Q 015072 389 ARFKE 393 (413)
Q Consensus 389 ~R~~~ 393 (413)
.||..
T Consensus 379 ~~f~~ 383 (387)
T COG0665 379 DRFAP 383 (387)
T ss_pred ccccc
Confidence 77543
No 11
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=268.01 Aligned_cols=370 Identities=21% Similarity=0.240 Sum_probs=280.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEI 82 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (413)
+.||+|||||..|+++|+.|.++ |++|+|||+++.- ..+++.-+.|.+...+.-+...++...+.+++....+.+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty-tqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl 164 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY-TQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL 164 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc-cccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence 58999999999999999999875 7999999998754 356666667788888888888888888888888887777
Q ss_pred CC------ee-EeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEE-EEecCCeeecHH
Q 015072 83 GY------KV-YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVG-VTTELGGVIKPT 153 (413)
Q Consensus 83 ~~------~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~ 153 (413)
++ +. +.+.|++.+..+ +.+.++...+...+.|...++++++++.++||. ++.....-+ +-...+|++||.
T Consensus 165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPw-lntegVaLa~lG~e~EGwfdpw 243 (509)
T KOG2853|consen 165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPW-LNTEGVALASLGVEKEGWFDPW 243 (509)
T ss_pred ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCc-ccccceeeeecccccccccCHH
Confidence 64 32 668888877653 344556666667778999999999999999998 765544433 334678999999
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCC-------------------cEEEEeCCc--cEEEeCeEEEcCCcC
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRG-------------------GVTVVTSSG--EEFWGKKCVVTAGAW 212 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~-------------------~~~v~~~~g--~~i~ad~vV~A~G~~ 212 (413)
.++..+++.+...|+.+. +.+|+.++. +. +. ++.|+..|+ +.+++..+|+|+|+|
T Consensus 244 ~LLs~~rrk~~~lGv~f~-~GeV~~Fef--~s-qr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 244 ALLSGIRRKAITLGVQFV-KGEVVGFEF--ES-QRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred HHHHHHHHHhhhhcceEe-cceEEEEEE--ec-ccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 999999999999999987 678888877 41 12 223333333 268999999999999
Q ss_pred hhhhhhhhcCC---------CcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC
Q 015072 213 VGKLVKKISGL---------ELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG 283 (413)
Q Consensus 213 ~~~l~~~~~g~---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~ 283 (413)
+.++++.. |+ .+|+.|.|.++..+..+.... ..+|...+.. .+|++-..-..+++.+.+ ..
T Consensus 320 s~QvArlA-gIG~g~g~L~vplPiepRKRyvyvi~~~~~PG------l~~Pl~iDps--G~f~Rrdglg~nfl~grs-p~ 389 (509)
T KOG2853|consen 320 SGQVARLA-GIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPG------LDTPLTIDPS--GVFFRRDGLGGNFLCGRS-PS 389 (509)
T ss_pred HHHHHHHh-ccCCCCceeeecccCCccceeEEEEeCCCCCC------CCCceeECCC--ccEEEecCCCCceecccC-Cc
Confidence 99887654 43 478999999888777553221 2255444433 467764432223343333 11
Q ss_pred CcC--CCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeec-cCCCCeEEecCCCCCCCCEEEEeCCCccccc
Q 015072 284 YLC--DPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSM-TPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360 (413)
Q Consensus 284 ~~~--~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~ 360 (413)
.+. ++..-+.+++.+.+.++..+....|.+... ++...|+|++-. |-|..++||++|.. .|+|+++|++|||+.
T Consensus 390 ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~feta-kVqsaWaGyyD~NtfD~ngViG~HP~y--~Nly~atGFsghGvq 466 (509)
T KOG2853|consen 390 EDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETA-KVQSAWAGYYDHNTFDDNGVIGEHPLY--TNLYMATGFSGHGVQ 466 (509)
T ss_pred cccCCCccccccChHHHHhhhhHHHHhccccccee-eeeehhcccccccccccCCcccCCcce--eeeeeeecccccchh
Confidence 111 222223333337788889999999999974 677899999876 78999999999998 999999999999999
Q ss_pred cchHHHHHHHHHHHcCCCCccccccccccccCCCC
Q 015072 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENP 395 (413)
Q Consensus 361 ~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~ 395 (413)
.+|++|+.+|++|++|....++++.|+.+|+.+..
T Consensus 467 qs~avgRAiaElIldG~f~tidLsrf~f~Rlv~~q 501 (509)
T KOG2853|consen 467 QSPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQ 501 (509)
T ss_pred cchHHHHHHHHHHhcCceeEEeccccchhHHhccC
Confidence 99999999999999999989999999999987754
No 12
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-37 Score=281.91 Aligned_cols=371 Identities=19% Similarity=0.284 Sum_probs=286.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
...|++|||||..|+++||+|+++|.+..+++..... .+++++...|.+.....+. ....+...+...+.+++++.++
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l-tsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL-TSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeee-ccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 3589999999999999999999999995555443332 2466666666655533333 3344555667788899999988
Q ss_pred ee-EeeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072 85 KV-YFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT 161 (413)
Q Consensus 85 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (413)
.. +.+.|.+++... ..+.++.+......+|.+.+.+++++..+++|. ++.++...++|.|.++++||..++++|..
T Consensus 117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL-Ln~d~v~g~Ly~P~DG~~DP~~lC~ala~ 195 (856)
T KOG2844|consen 117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL-LNVDDVYGGLYSPGDGVMDPAGLCQALAR 195 (856)
T ss_pred CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc-cchhHheeeeecCCCcccCHHHHHHHHHH
Confidence 76 788888887543 233445555555667889999999999999999 99999999999999999999999999999
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE 241 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~ 241 (413)
.+++.|+.|.+++.|++|.. .. ++.+.|+|.-|. +++.+||+|||.|+..+-. +++..+|+.|..+++++.+..+
T Consensus 196 ~A~~~GA~viE~cpV~~i~~--~~-~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~-m~gvkvPL~p~~H~YvvT~~Ie 270 (856)
T KOG2844|consen 196 AASALGALVIENCPVTGLHV--ET-DKFGGVETPHGS-IETECVVNAAGVWAREVGA-MAGVKVPLVPMHHAYVVTSRIE 270 (856)
T ss_pred HHHhcCcEEEecCCcceEEe--ec-CCccceeccCcc-eecceEEechhHHHHHhhh-hcCCcccceeeeeeEEEecccC
Confidence 99999999999999999998 42 255689999898 9999999999999977654 4589999999999988766444
Q ss_pred CCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCc----CCC------CCCCCCCCcchHHHHHHHHhhcC
Q 015072 242 GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYL----CDP------DRRPWGPGPLLDSLKELIQGRFA 311 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~----~~~------~~~~~~~~~~~~~l~~~~~~~~p 311 (413)
... .+ .+......+..+|++-..+ +.+.++...+.. ..+ .+.+| +.+....+.+.++.|
T Consensus 271 Gi~-s~-----t~p~irD~DgSvylR~~~~--gil~GGyE~n~i~~egv~~~~~~~lqE~DW---d~F~~hlesai~r~P 339 (856)
T KOG2844|consen 271 GVS-SL-----TRPNIRDLDGSVYLRQQGD--GILFGGYESNPIFTEGVPPGFATGLQEPDW---DHFEPHLEAAIERVP 339 (856)
T ss_pred Ccc-CC-----CccceecccceEEEEecCC--ceeccccccCceeccccCCccccccccccH---hhhHHHHHHHHHhCc
Confidence 321 11 1124455666788876543 655554422110 111 11122 145566677888999
Q ss_pred CCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcccccccccccc
Q 015072 312 GRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391 (413)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~ 391 (413)
.+.+. .+...-+|.-.+|||.+|++|+.|.. .|+|+++|+++.|++++-++|+.+++.|+.|++ +.|+..|++.||
T Consensus 340 ~l~k~-~i~~~v~gpe~ftPD~~p~mGe~p~~--~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p-~~d~~~~D~~Rf 415 (856)
T KOG2844|consen 340 VLEKA-GIKSLVNGPETFTPDHLPIMGESPEV--RGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP-PLDVHELDLRRF 415 (856)
T ss_pred hhhhc-CccceecCccccCCccccccCCCccc--cceEEeecCCccceeccCchhHHHHHHhhcCCC-CccchhccHHHh
Confidence 99974 56667789999999999999999999 999999999999999999999999999999988 789999999999
Q ss_pred CCCCCCC
Q 015072 392 KENPKGN 398 (413)
Q Consensus 392 ~~~~~~~ 398 (413)
.+.....
T Consensus 416 ~~~~~~~ 422 (856)
T KOG2844|consen 416 GKLQTNR 422 (856)
T ss_pred hhhhccc
Confidence 8754433
No 13
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=1.4e-36 Score=282.33 Aligned_cols=335 Identities=18% Similarity=0.213 Sum_probs=239.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCCee
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
+||+|||||++|+++|++|+++|++|+|+|+.... .++|..+.|.+...... ....++...+.+.|+++.++.++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~--~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~- 77 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA--QGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIW- 77 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCC-
Confidence 58999999999999999999999999999998764 46666777766543222 334567888999999998887765
Q ss_pred EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 87 YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
+.+.+.+.+...+ .+.+....+.....+.+.++++++++.+.+|. +..+....+++.+.++++||..++..|.+.+.
T Consensus 78 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~ 156 (365)
T TIGR03364 78 VRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPA-LRLDGLRGGLHSPDELRVEPREAIPALAAYLA 156 (365)
T ss_pred EEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCC-CCccCceEEEEcCCCeeECHHHHHHHHHHHHH
Confidence 3556666664332 22234444444556777899999999999997 55456677889999999999999999999887
Q ss_pred Hc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCC
Q 015072 165 KN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD 243 (413)
Q Consensus 165 ~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~ 243 (413)
+. |++++.+++|++|+. . .|++++|+ ++||+||+|+|+|+..+++.+ +..+|+.|.+++++.++.....
T Consensus 157 ~~~Gv~i~~~t~V~~i~~--~------~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p~~~q~~~~~p~~~~ 226 (365)
T TIGR03364 157 EQHGVEFHWNTAVTSVET--G------TVRTSRGD-VHADQVFVCPGADFETLFPEL-FAASGVRRCKLQMMRTAPQPRL 226 (365)
T ss_pred hcCCCEEEeCCeEEEEec--C------eEEeCCCc-EEeCEEEECCCCChhhhCcch-hhccCcceEEEEeeeccCCCCC
Confidence 75 999999999999966 2 46777776 889999999999999887766 5678999999999877633211
Q ss_pred --ccccccC-----------------------CCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcc
Q 015072 244 --EADYAVG-----------------------GDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL 298 (413)
Q Consensus 244 --~~~~~~~-----------------------~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 298 (413)
...+... ...|.... ....+|++|..+ |.+.++.........+. ......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~--g~~~iG~~~~~~~~~~~--~~~~~~ 301 (365)
T TIGR03364 227 PLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLE-WGIHLMVSQNPD--GELIIGDSHEYGLAPDP--FDDEEI 301 (365)
T ss_pred cCCccccccceeeechhHhhCcchHHHHhhhcccCchhhh-cCeEEEEEECCC--CCEEecCcccccCCCCC--cchHHH
Confidence 0010000 00011111 122468888754 54444432222111111 111124
Q ss_pred hHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHH
Q 015072 299 LDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGR 367 (413)
Q Consensus 299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~ 367 (413)
.+.+.+.+.+++ .+.+. .+...|+|+|++|+|..|+++.. . +|+|+++||+|+|+++||++|+
T Consensus 302 ~~~l~~~~~~~~-~l~~~-~~~~~w~G~r~~t~d~~~v~~~~--~--~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 302 DNLILAEAKTIL-GLPDL-DIVERWQGVYASSPPAPIFLERP--D--DGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred HHHHHHHHHHhc-CCCCC-ceEEEEeEEecCCCCCCceecCC--C--CCeEEEEecCCCcccccccccC
Confidence 566777777776 57653 56789999999999988888744 3 8999999999999999999886
No 14
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=2.1e-36 Score=282.07 Aligned_cols=337 Identities=21% Similarity=0.241 Sum_probs=243.5
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC--ccccchH----HHHHHHHHHHHHhcCCee-Eeeeeeee
Q 015072 22 AAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--DYYHPMV----LESSLLWEQAQSEIGYKV-YFKAHQFD 94 (413)
Q Consensus 22 ~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 94 (413)
+|++|+++|++|+|||+....+ .++|+.+.|.+...+.. ....++. ..+.++|+++.+. +.++ +...+.+.
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~~~~G~L~ 78 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPA-QGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDHEWCGVLQ 78 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCccc-ccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccCceEE
Confidence 5999999999999999965332 36677777777664432 1223343 2456778877553 5554 34567776
Q ss_pred eCCCChHHHHHHHHHHHhCCCCc---cccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEe
Q 015072 95 MGPSENKSLRSVIASCRKNSVPH---QVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLR 171 (413)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~ 171 (413)
+... .+.+..+.+..+..+.+. ++++.+++...++. .....+++.+.++++||..++..|.+.+.+ |++++
T Consensus 79 ~a~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~ 152 (381)
T TIGR03197 79 LAYD-EKEAERLQKLLEQLGFPEELARWVDAEQASQLAGI----PLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLH 152 (381)
T ss_pred ecCC-hHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCC----CCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEE
Confidence 6543 233444444444455543 47888888887654 345678899999999999999999999988 99999
Q ss_pred cCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCC
Q 015072 172 DNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGG 251 (413)
Q Consensus 172 ~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (413)
++++|++|+. + ++.+.+++.+|+.++||+||+|+|+|+..+.+. ..+|+.|.+++++.+..++...
T Consensus 153 ~~~~V~~i~~--~--~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~---~~~pi~p~rg~~~~~~~~~~~~------- 218 (381)
T TIGR03197 153 FNTEITSLER--D--GEGWQLLDANGEVIAASVVVLANGAQAGQLAQT---AHLPLRPVRGQVSHLPATEALS------- 218 (381)
T ss_pred eCCEEEEEEE--c--CCeEEEEeCCCCEEEcCEEEEcCCccccccccc---ccCCccccccceeeccCCCccc-------
Confidence 9999999988 6 456888888887789999999999999887664 3679999999998876432110
Q ss_pred CCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCC-----CCCCCceeeeee
Q 015072 252 DFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRV-----DSSGPAATQLCM 326 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~-----~~~~~~~~~~g~ 326 (413)
.++..... ..|++|..+ |.+.++.+..... .+ .. ...+..+.+.+.+.+++|.+. +. .+...|+|+
T Consensus 219 ~~~~~~~~---~~y~~p~~~--g~~~iG~t~~~~~-~~-~~-~~~~~~~~~~~~~~~~~P~l~~~~~~~~-~~~~~~~G~ 289 (381)
T TIGR03197 219 ALKTVLCY---DGYLTPANN--GEHCIGASYDRND-DD-LA-LREADHAENLERLAECLPALAWASEVDI-SALQGRVGV 289 (381)
T ss_pred ccCceEeC---CceecccCC--CceEeecccCCCC-CC-CC-cCHHHHHHHHHHHHHhCcccchhhccCc-cccCceEEE
Confidence 12322222 258888754 5444443221111 11 11 111257788889999999986 43 578899999
Q ss_pred eeccCCCCeEEecCCC-------------------------CCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcc
Q 015072 327 YSMTPDKDFVIDFLGG-------------------------ELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGV 381 (413)
Q Consensus 327 ~~~t~d~~p~ig~~~~-------------------------~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~ 381 (413)
||+|+|++|+||++|. . +|+|+++||+|+|+++||++|+++|++|+ +...+.
T Consensus 290 r~~t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~G~~g~G~~~ap~~g~~la~~i~-~~~~~~ 366 (381)
T TIGR03197 290 RCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYY--PGLYVLGGLGSRGLTSAPLAAEILAAQIC-GEPLPL 366 (381)
T ss_pred eccCCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCC--CCeEEEecccchHHHHHHHHHHHHHHHHh-CCCCCC
Confidence 9999999999999987 6 99999999999999999999999999998 444344
Q ss_pred c---cccccccccC
Q 015072 382 E---LRHFRIARFK 392 (413)
Q Consensus 382 ~---~~~~~~~R~~ 392 (413)
+ ++.|+|+||.
T Consensus 367 ~~~~~~~~~~~rf~ 380 (381)
T TIGR03197 367 ERDLLHALHPARFL 380 (381)
T ss_pred cHHHHHhcChhhhc
Confidence 3 5789999985
No 15
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=1.7e-35 Score=272.56 Aligned_cols=325 Identities=19% Similarity=0.196 Sum_probs=245.0
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc----CCccccchHHHHHHHHHHHHHhc----CCee-Eeeeeeee
Q 015072 24 YQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESSLLWEQAQSEI----GYKV-YFKAHQFD 94 (413)
Q Consensus 24 ~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~ 94 (413)
++|+++|.+|+|+|+.... .++|..+.|.+.... ....+.++...+.++|+++.++. ++++ +...+.+.
T Consensus 1 ~~La~~G~~V~vle~~~~~--~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~ 78 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMG--GGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLV 78 (337)
T ss_pred ChHHHCCCceEEEcCCCCC--cccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEE
Confidence 5799999999999998743 467777777776543 33456677888899999887654 5565 44667776
Q ss_pred eCC--CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEec
Q 015072 95 MGP--SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRD 172 (413)
Q Consensus 95 ~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~ 172 (413)
+.. .+.+.++......+..+.+.++++.+++.+.+|. ++ .....+++.+.+++++|..++..+.+.+.+.|++++.
T Consensus 79 ~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~-l~-~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~ 156 (337)
T TIGR02352 79 VAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPY-LS-GGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE 156 (337)
T ss_pred EeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCC-CC-cccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence 643 3344556666777778888999999999999997 54 4566789999999999999999999999999999999
Q ss_pred CceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCC
Q 015072 173 NTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGD 252 (413)
Q Consensus 173 ~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (413)
+++|++|.. +++ ....|.+.+|. ++||.||+|+|+|+..+.+ +|+.|.+++++.++.+.... ..
T Consensus 157 ~~~v~~i~~--~~~-~~~~v~~~~g~-~~a~~vV~a~G~~~~~l~~------~~~~~~~g~~~~~~~~~~~~------~~ 220 (337)
T TIGR02352 157 HTEVQHIEI--RGE-KVTAIVTPSGD-VQADQVVLAAGAWAGELLP------LPLRPVRGQPLRLEAPAVPL------LN 220 (337)
T ss_pred cceEEEEEe--eCC-EEEEEEcCCCE-EECCEEEEcCChhhhhccc------CCccccCceEEEeecccccc------CC
Confidence 999999998 621 33457777774 9999999999999987754 58899999998887443111 01
Q ss_pred CceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCC
Q 015072 253 FPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPD 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d 332 (413)
.+......+...|++|..+ |.+.++....... . ......+..+.+.+.+.++||.+.+. .+...|+|+|++|+|
T Consensus 221 ~~~~~~~~~~~~y~~p~~~--g~~~iG~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~r~~t~D 294 (337)
T TIGR02352 221 RPLRAVVYGRRVYIVPRRD--GRLVVGATMEESG--F-DTTPTLGGIKELLRDAYTILPALKEA-RLLETWAGLRPGTPD 294 (337)
T ss_pred cccceEEEcCCEEEEEcCC--CeEEEEEeccccC--c-cCCCCHHHHHHHHHHHHHhCCCcccC-cHHHheecCCCCCCC
Confidence 2221111123478888754 5344444221111 1 11112237889999999999999874 567899999999999
Q ss_pred CCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072 333 KDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG 376 (413)
Q Consensus 333 ~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~ 376 (413)
++|+||++|.. +|+|+++|++|+|++++|++|+.+|++|.++
T Consensus 295 ~~piig~~~~~--~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 295 NLPYIGEHPED--RRLLIATGHYRNGILLAPATAEVIADLILGK 336 (337)
T ss_pred CCCEeCccCCC--CCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence 99999999987 8999999999999999999999999999854
No 16
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=1.9e-33 Score=263.19 Aligned_cols=347 Identities=18% Similarity=0.177 Sum_probs=249.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceeccc--CC-ccccchHHHHHHHHHHHHHh
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--PE-DYYHPMVLESSLLWEQAQSE 81 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 81 (413)
++||+|||||++|+++|++|+++ |++|+|+|+....+ .++|..+.|.++... .. ....++...+.+.|.++.++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~-~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA-RHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc-ccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999 99999999986443 356666677776542 11 12456778889999999888
Q ss_pred cCCeeEeeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 82 IGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
.+.. +...+.+.+... +.+.+....+.+...+.+.+.++.+++.+.+|. +. ...+++.+.++++++..+++.|
T Consensus 81 ~~~~-~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~---~~~al~~p~~g~vd~~~l~~aL 155 (393)
T PRK11728 81 HGIP-YEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPN-IR---GLGAIFVPSTGIVDYRAVAEAM 155 (393)
T ss_pred cCCC-cccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCC-cc---ccceEEcCCceEECHHHHHHHH
Confidence 7765 445666665433 233455566667778888899999999999998 43 3678999999999999999999
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCC--CcceeEEEEEEEEE
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGL--ELPIQAVETSVCYW 237 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~--~~p~~~~~~~~~~~ 237 (413)
.+.+++.|++++++++|+++.. . ++.+.|.+.+++ +.+|.||+|+|.|+..+.+.+ |. ..++.|.+|+++.+
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g~-i~ad~vV~A~G~~s~~l~~~~-g~~~~~~v~p~rGq~~~~ 229 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDE--H--ANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMA-GLEPDFRIVPFRGEYYRL 229 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEe--c--CCeEEEEECCCE-EEeCEEEECCCcchHHHHHHh-CCCCCCceEEeeeEEEEe
Confidence 9999999999999999999988 6 345778777774 999999999999998887766 65 37899999999888
Q ss_pred EecCC-CccccccCCCCceEE-ecCCCeeEecCCCCCCCeEEEEe--CCC---CcCCCCCCC---CC-------------
Q 015072 238 RIKEG-DEADYAVGGDFPSFA-SYGDPHVYGTPSLEYPGLIKIAL--HRG---YLCDPDRRP---WG------------- 294 (413)
Q Consensus 238 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~--~~~---~~~~~~~~~---~~------------- 294 (413)
+.... ....+. +|... ......+|++|..+ |.+.+|. +.. ...+..... +.
T Consensus 230 ~~~~~~~~~~~v----~~~p~~~~~~~g~~~~p~~~--G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11728 230 APEKNQLVNHLI----YPVPDPAFPFLGVHLTRMID--GSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQ 303 (393)
T ss_pred ccccccccCCce----ecCCCCCCCcceEEeecCCC--CCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHH
Confidence 64321 111100 11000 01112478888755 6555543 110 001110000 00
Q ss_pred --CCcchHHH---------HHHHHhhcCCCCCCCCCceeeeeeee--ccCCCCeEEecCCCCCCCCEEEEeCCCcccccc
Q 015072 295 --PGPLLDSL---------KELIQGRFAGRVDSSGPAATQLCMYS--MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361 (413)
Q Consensus 295 --~~~~~~~l---------~~~~~~~~p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~ 361 (413)
..+.++++ .+.+.+++|.+.+. .+...|+|+|| +++|+.|+-+.+-.. .++.+.+.|..+-|+|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~-~i~~~~~G~Rp~~~~~d~~~~~d~~i~~-~~~~~~~~~~~spg~t~ 381 (393)
T PRK11728 304 KHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLS-DLQPYPAGVRAQAVSRDGKLVDDFLFVE-TPRSLHVCNAPSPAATS 381 (393)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHH-HcccCCCceeeeeeCCCCCccCceEEec-CCCEEEEcCCCCchHHc
Confidence 01134444 48899999999974 67789999999 899987765533211 27788889999999999
Q ss_pred chHHHHHHHHHH
Q 015072 362 APVVGRILADLV 373 (413)
Q Consensus 362 a~~~a~~~a~~i 373 (413)
||++|+.|++++
T Consensus 382 s~~ia~~v~~~~ 393 (393)
T PRK11728 382 SLPIGEHIVSKV 393 (393)
T ss_pred cHHHHHHHHhhC
Confidence 999999998863
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=9.6e-31 Score=252.67 Aligned_cols=340 Identities=15% Similarity=0.167 Sum_probs=231.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC----ccccchHHHHHHHHHHHHHh
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE----DYYHPMVLESSLLWEQAQSE 81 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (413)
.++||+|||||++|+++|++|+++|++|+|||+++.. .++|..+.+.++..+.. ....+........+.++...
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~--~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~ 82 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA--TGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH 82 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC--CCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence 4699999999999999999999999999999998765 46777778888764321 11111222223334444332
Q ss_pred cCCeeEeeeeeeeeC-C-CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 82 IGYKVYFKAHQFDMG-P-SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
++...+.+.+. + .+...+..+.+.+...|++.++++.+++.+.+|. ++ +...++++.+ ++++||.+++..+
T Consensus 83 ----~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~-l~-~~~~ga~~~~-dg~vdp~rl~~al 155 (546)
T PRK11101 83 ----CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA-VN-PALIGAVKVP-DGTVDPFRLTAAN 155 (546)
T ss_pred ----hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-cC-ccceEEEEec-CcEECHHHHHHHH
Confidence 23344444432 2 2233445566667778888999999999999998 65 3456677777 5799999999999
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCc--cEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEE
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSG--EEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV 234 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~ 234 (413)
...+.++|++++++++|+++.. +++ ..+.|++ .++ .+++|+.||+|+|+|+..+.... +..+|+.|.||++
T Consensus 156 ~~~A~~~Ga~i~~~t~V~~i~~--~~~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~ 231 (546)
T PRK11101 156 MLDAKEHGAQILTYHEVTGLIR--EGD-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFPAKGSL 231 (546)
T ss_pred HHHHHhCCCEEEeccEEEEEEE--cCC-eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc-CCCCceeecceEE
Confidence 9999999999999999999988 632 2223332 223 36999999999999999998766 7889999999999
Q ss_pred EEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-c-CCCCCCCCCCCcchHHHHHHHHhhcCC
Q 015072 235 CYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-L-CDPDRRPWGPGPLLDSLKELIQGRFAG 312 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~p~ 312 (413)
+.++... ...+.. . . ....+. .|++|. ++.+++|++... . .+++... ...+.++.|.+.+.+++|.
T Consensus 232 lv~~~~~--~~~vi~-~-~---~~~~~~-~~~vp~---~~~~liGtT~~~~~~~~~~~~~-~t~~~i~~Ll~~~~~l~P~ 299 (546)
T PRK11101 232 LIMDHRI--NNHVIN-R-C---RKPADA-DILVPG---DTISLIGTTSTRIDYDQIDDNR-VTAEEVDILLREGEKLAPV 299 (546)
T ss_pred EEECCcc--CceeEe-c-c---CCCCCC-CEEEec---CCEEEEeeCCCCccCCCcCCCC-CCHHHHHHHHHHHHHhCCC
Confidence 9875211 100000 0 0 001122 234553 244444443211 1 1222111 1223789999999999999
Q ss_pred CCCCCCCceeeeeeeeccC-CC----------CeEEecC--CCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072 313 RVDSSGPAATQLCMYSMTP-DK----------DFVIDFL--GGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG 376 (413)
Q Consensus 313 ~~~~~~~~~~~~g~~~~t~-d~----------~p~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~ 376 (413)
+.+. .++..|+|+||... +. .++++.. .+. +|++.++| |. ++.++.+|+.++++++..
T Consensus 300 l~~~-~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~--~gli~i~G--Gk-ltt~r~~Ae~v~d~v~~~ 370 (546)
T PRK11101 300 MAKT-RILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL--DGFITITG--GK-LMTYRLMAEWATDAVCRK 370 (546)
T ss_pred CCcc-CEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCC--CCeEEEEC--Ch-HHHHHHHHHHHHHHHHHh
Confidence 9874 68889999999843 22 2677743 334 88999997 43 888889999999999743
No 18
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=221.91 Aligned_cols=353 Identities=20% Similarity=0.221 Sum_probs=259.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCCCcceecccCCc---cccchHHHHHHHHHHHHH
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYPED---YYHPMVLESSLLWEQAQS 80 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (413)
+++||+|||||++|+++|++|++.+ ++|+|+||.+..+ ..+|.++++.+|..+... -..+++..+...+.++++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-QESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc-cccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 3699999999999999999999997 9999999998876 456668888888765322 234677888888899999
Q ss_pred hcCCeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072 81 EIGYKVYFKAHQFDMG--PSENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS 157 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
++++++... +.+.+. ..+.+.++.+++.+...++. .+.++++++.+..|. +. +....+++.+..+.+|+..++.
T Consensus 81 q~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~-l~-~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 81 QLGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPL-LN-EGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HhCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcc-cc-ccceeeEEcCCCceEcHHHHHH
Confidence 999887555 666554 34456778888888888987 899999999999998 54 3467789999999999999999
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccE-EEeCeEEEcCCcChhhhhhhhcCCC--cceeEEEEEE
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEE-FWGKKCVVTAGAWVGKLVKKISGLE--LPIQAVETSV 234 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~vV~A~G~~~~~l~~~~~g~~--~p~~~~~~~~ 234 (413)
+|.+.++++|++++++++|++|++ .++ +...+.+++|++ ++|+.||+|+|.++..++++. |.. ....|.+|+.
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~--~~d-g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~-g~~~~~~~~P~~G~y 233 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEK--QSD-GVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA-GIPEDFKIFPVRGEY 233 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEE--eCC-ceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh-CCCcccccCccceEE
Confidence 999999999999999999999999 622 256667788876 999999999999999999887 543 4567888988
Q ss_pred EEEEecCCC-c-cccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCC-CCCCCCcchHHHHHHHHhhcC
Q 015072 235 CYWRIKEGD-E-ADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDR-RPWGPGPLLDSLKELIQGRFA 311 (413)
Q Consensus 235 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~p 311 (413)
.++...... . +.+.+ .|..-. ....+..+++.+ |.+..|-+..+...... ......+..+.+.....+.||
T Consensus 234 ~~~~~~~~~~~~~~Iy~---~p~~~~-p~~gV~~~~~id--G~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~ 307 (429)
T COG0579 234 LVLDNEVKALLRHKIYP---VPNPGL-PGLGVHHTPTID--GSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMP 307 (429)
T ss_pred EEEcccccccccceeec---CCCCCC-CCCcceeecccC--CeEEECCCcccchhhhccccccccchhhhHHHhhhhhcc
Confidence 877632111 1 11110 000000 012355555543 54555443332211011 011112277888888888998
Q ss_pred CCC-CCCCCceeeeeeeec-----cCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072 312 GRV-DSSGPAATQLCMYSM-----TPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS 375 (413)
Q Consensus 312 ~~~-~~~~~~~~~~g~~~~-----t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~ 375 (413)
.+. .. .....+.|.||+ .++...+|-..... ++.....|.-..|++.++..++.+.+++.+
T Consensus 308 ~~~~~~-~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~--~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 308 DLGIKN-NVLANYAGIRPILKEPRLPALDFIIPEAKDE--DWFINVAGIRSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred cccccc-cchhhhheeccccccccccccceecccccCC--CCceeeeeEEccccccChhHhhhHhhhccc
Confidence 877 32 356678889994 55666666645444 788888999999999999999999999864
No 19
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=2.2e-28 Score=234.82 Aligned_cols=348 Identities=17% Similarity=0.166 Sum_probs=220.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccccchHHHHHHHHHHHHHh
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESSLLWEQAQSE 81 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (413)
|..++||+|||||++|+++|++|+++|++|+|||+++.. .++|..+.+.++... ......++..++...+..+.+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~--~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ 80 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA--QGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA 80 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC--CCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 455699999999999999999999999999999999876 356666666665432 2222455666666666655443
Q ss_pred cCCeeEeeeeeeee-CCCChHHHHH--HHHHHHhCC----C-CccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHH
Q 015072 82 IGYKVYFKAHQFDM-GPSENKSLRS--VIASCRKNS----V-PHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPT 153 (413)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~g----~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
... +....+.+.. ...+...+.. -...+...+ + +.+.++..+..+..|. .....+.+...+++++|.
T Consensus 81 ap~-l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l----~~~~~~a~~~~dg~vd~~ 155 (502)
T PRK13369 81 APH-IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPL----KPEYTKGFEYSDCWVDDA 155 (502)
T ss_pred CCc-cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCc----hHhcCEEEEEcCeeecHH
Confidence 221 1122221111 1111111110 011111111 2 2344554444333332 223445566788899999
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc----cEEEeCeEEEcCCcChhhhhhhhcCCC--cce
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG----EEFWGKKCVVTAGAWVGKLVKKISGLE--LPI 227 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g----~~i~ad~vV~A~G~~~~~l~~~~~g~~--~p~ 227 (413)
+++..+...+.+.|++++.+++|+++.. + ++.+.+.+.++ .+++|+.||+|+|+|+..+.+.+.|.. .++
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v 231 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARR--E--GGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNV 231 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEE--c--CCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcce
Confidence 9999999999999999999999999998 6 34556655443 259999999999999999987554643 469
Q ss_pred eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCC-CCcCCCCCCCCCCCcchHHHHHHH
Q 015072 228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPDRRPWGPGPLLDSLKELI 306 (413)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 306 (413)
.|.+|+++.++... . . .....+...+.+.+|++|..+ +...+|++. ....++.... ...+.++.|.+.+
T Consensus 232 ~p~kG~~lv~~~~~--~----~-~~~~~~~~~dgr~~~i~P~~~--~~~liGtTd~~~~~~~~~~~-~~~~~i~~ll~~~ 301 (502)
T PRK13369 232 RLVKGSHIVVPKFW--D----G-AQAYLFQNPDKRVIFANPYEG--DFTLIGTTDIAYEGDPEDVA-ADEEEIDYLLDAA 301 (502)
T ss_pred EEeeEEEEEeCCcc--C----C-CceEEEeCCCCeEEEEEEecC--CEEEEEecCccccCCCCCCC-CCHHHHHHHHHHH
Confidence 99999988764111 1 0 001122223344578999853 444444432 1122222211 1223899999999
Q ss_pred HhhcC-CCCCCCCCceeeeeeeeccCCC---------CeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072 307 QGRFA-GRVDSSGPAATQLCMYSMTPDK---------DFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG 376 (413)
Q Consensus 307 ~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~ 376 (413)
+++|| .+.+. .+...|+|+||.++|+ ..+|-.......++++.+.| -++|.+..+|+.+++.++..
T Consensus 302 ~~~~~~~l~~~-~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~~~ 377 (502)
T PRK13369 302 NRYFKEKLRRE-DVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLKPF 377 (502)
T ss_pred HHhhCCCCCHh-HEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHHHh
Confidence 99997 77753 5788999999998753 33343332111267888887 37999999999999998743
No 20
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.97 E-value=3.5e-28 Score=237.23 Aligned_cols=351 Identities=15% Similarity=0.092 Sum_probs=218.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--------C-CccccchHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--------P-EDYYHPMVLESSLLW 75 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~ 75 (413)
.+++||+|||||++|+++|++|+++|++|+|||+++..+ ++|..+.+.++... . +.....+..++...+
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~--GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er 146 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER 146 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCC--CcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence 346999999999999999999999999999999998764 45555554444321 0 111234455555544
Q ss_pred HHHHHhcCCeeEeeeeeeeeCCC--ChHH-H--HHHHHHH-HhCCC-CccccCHHHHHHhcCCcccCCC---CeEEEEec
Q 015072 76 EQAQSEIGYKVYFKAHQFDMGPS--ENKS-L--RSVIASC-RKNSV-PHQVLDCRQVLQKYSGRIEIPE---NWVGVTTE 145 (413)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--~~~~~~~-~~~g~-~~~~l~~~~~~~~~p~~~~~~~---~~~~~~~~ 145 (413)
..+.+.... +......+..... .... . ....+.+ ...+. ..++++.+++.+.+|. ++... ...+.+.+
T Consensus 147 ~~l~~~ap~-l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~-L~~~~~~~~l~ga~~~ 224 (627)
T PLN02464 147 KQLIENAPH-LCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPT-LAKKGKDGSLKGTVVY 224 (627)
T ss_pred HHHHhhChh-hccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCC-CCccccccceeEEEEe
Confidence 444332111 0011111100000 0000 0 0111111 11222 3478999999999998 65220 24444466
Q ss_pred CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhh
Q 015072 146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKK 219 (413)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~ 219 (413)
.++++||.+++..+.+.+.+.|++++.+++|+++.. ++ ++..+.|+. .+++ ++.+|.||+|+|+|+..+...
T Consensus 225 ~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~--~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~ 302 (627)
T PLN02464 225 YDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIK--DESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM 302 (627)
T ss_pred cCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEE--ecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence 779999999999999999999999999999999988 63 223333332 2333 589999999999999999887
Q ss_pred hcCCCc-ceeEEEEEEEEEEecCCCccccccCCCCceE--EecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCC
Q 015072 220 ISGLEL-PIQAVETSVCYWRIKEGDEADYAVGGDFPSF--ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPG 296 (413)
Q Consensus 220 ~~g~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
+.+... ++.|.+|+++.+... +.+ ..++.. ....++.+|++|. + |.++++++.....++.... ...
T Consensus 303 ~g~~~~~~I~p~kG~hlvl~~~------~~~-~~~~~i~~~~~dgr~~~~~P~-~--g~~liGtTd~~~~~~~~~~-~t~ 371 (627)
T PLN02464 303 ADGKAKPMICPSSGVHIVLPDY------YSP-EGMGLIVPKTKDGRVVFMLPW-L--GRTVAGTTDSKTPITMLPE-PHE 371 (627)
T ss_pred ccCcCCCceEeeeeEEEecccc------cCC-CCceEEecCCCCCCEEEEEec-C--CcEEEecCCCCCCCCCCCC-CCH
Confidence 633334 499999988765311 000 011111 1234556899998 3 4344444322111111111 122
Q ss_pred cchHHHHHHHHhhcC-CCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCcc-----ccccchHHHHHHH
Q 015072 297 PLLDSLKELIQGRFA-GRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGH-----GFKMAPVVGRILA 370 (413)
Q Consensus 297 ~~~~~l~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~-----G~~~a~~~a~~~a 370 (413)
+.++.|.+.+++++| .+... .+...|+|+||.++|..|.++..+.. ++++...|++-- =+|....+|+.+.
T Consensus 372 ~ei~~Ll~~a~~~~~~~l~~~-~v~~~waG~RPl~~d~~~~~~~~~sr--~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~ 448 (627)
T PLN02464 372 DEIQFILDAISDYLNVKVRRS-DVLSAWSGIRPLAVDPSAKSTESISR--DHVVCEEPDGLVTITGGKWTTYRSMAEDAV 448 (627)
T ss_pred HHHHHHHHHHHHhhCCCCChh-hEEEEEEeEEeeccCCCCCcccccCC--ceEEEecCCCeEEEECChHHHHHHHHHHHH
Confidence 389999999999998 67653 56789999999999987776655543 555555544322 2677788999999
Q ss_pred HHHHc
Q 015072 371 DLVLS 375 (413)
Q Consensus 371 ~~i~~ 375 (413)
+.+++
T Consensus 449 d~~~~ 453 (627)
T PLN02464 449 DAAIK 453 (627)
T ss_pred HHHHH
Confidence 98875
No 21
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=1.3e-27 Score=229.19 Aligned_cols=350 Identities=18% Similarity=0.157 Sum_probs=215.8
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccccchHHHHHHHHHHH
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESSLLWEQA 78 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (413)
|+ |.+++||+|||||++|+++|+.|+++|++|+|||+++..+ ++|..+.+.++... .......+..++...+..+
T Consensus 1 ~~-~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l 77 (508)
T PRK12266 1 MT-MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS--ATSSASTKLIHGGLRYLEHYEFRLVREALAEREVL 77 (508)
T ss_pred CC-CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--CccccccccccchHHHhhhccHHHHHHHHHHHHHH
Confidence 55 3456999999999999999999999999999999988764 44545555555432 1122345666666666555
Q ss_pred HHhcCCeeEeeeeeee-eCCCChHHH-HHH-HHHHHhCCCCccccCHHHHHHhc-----CCcccCCCCeEEEEecCCeee
Q 015072 79 QSEIGYKVYFKAHQFD-MGPSENKSL-RSV-IASCRKNSVPHQVLDCRQVLQKY-----SGRIEIPENWVGVTTELGGVI 150 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~l~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~ 150 (413)
.+....-. .+...+. ........+ ... .......+. ...++..+..... +. +. ....+.+.+.++++
T Consensus 78 ~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-~~~l~~~~~~~~~~~~~~~~-L~--~~l~g~~~~~dg~v 152 (508)
T PRK12266 78 LRMAPHII-WPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-RKSLPGSRGLDLGRDPAGSP-LK--PEITRGFEYSDCWV 152 (508)
T ss_pred HHhCCCcc-cccceEEEecccccchHHHHHHHHHHHhhcC-CCCCChhhhhchhhcccCCC-cc--hhhcEEEEEcCccc
Confidence 54432111 1111111 111000000 000 011111111 1223333322222 33 22 22333355677789
Q ss_pred cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc--EEEeCeEEEcCCcChhhhhhhhcCC--
Q 015072 151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE--EFWGKKCVVTAGAWVGKLVKKISGL-- 223 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~vV~A~G~~~~~l~~~~~g~-- 223 (413)
||.+++..+...+.+.|++++++++|+++.. + ++.+.+.+.+ |+ +++|+.||+|+|+|+..+.+.+.|.
T Consensus 153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~ 228 (508)
T PRK12266 153 DDARLVVLNARDAAERGAEILTRTRVVSARR--E--NGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228 (508)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence 9999999999999999999999999999988 6 3445555432 42 6999999999999999987754344
Q ss_pred CcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcchHHH
Q 015072 224 ELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPLLDSL 302 (413)
Q Consensus 224 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 302 (413)
..++.|.+|+++.++.... . .....+...+++.+|++|..+ |...+|++.. ...+++... ...+.++.|
T Consensus 229 ~~~i~p~kG~~lvl~~~~~------~-~~~~~~~~~dgr~v~~~P~~~--g~~liGttd~~~~~~~~~~~-~~~~~i~~L 298 (508)
T PRK12266 229 PYGIRLVKGSHIVVPRLFD------H-DQAYILQNPDGRIVFAIPYED--DFTLIGTTDVEYKGDPAKVA-ISEEEIDYL 298 (508)
T ss_pred CcceeeeeeEEEEECCcCC------C-CcEEEEeCCCCCEEEEEEeCC--CeEEEecCCCCCCCCCCCCC-CCHHHHHHH
Confidence 4589999999887642111 0 111222233455678888854 5555554321 112222111 122378999
Q ss_pred HHHHHhhcC-CCCCCCCCceeeeeeeeccCCC---------CeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072 303 KELIQGRFA-GRVDSSGPAATQLCMYSMTPDK---------DFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL 372 (413)
Q Consensus 303 ~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~ 372 (413)
.+.+++++| .+.. ..++..|+|+||.++|+ ..+|-.+.....+|++.++| | .+|.+..+|+.+.+.
T Consensus 299 l~~~~~~~p~~l~~-~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~G--g-k~Tt~r~mAe~~~~~ 374 (508)
T PRK12266 299 CKVVNRYFKKQLTP-ADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFG--G-KITTYRKLAEHALEK 374 (508)
T ss_pred HHHHHHhcCCCCCH-HHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEc--C-hHHHHHHHHHHHHHH
Confidence 999999996 6765 35788999999999884 34554332111277888886 3 599999999999999
Q ss_pred HHcC
Q 015072 373 VLSG 376 (413)
Q Consensus 373 i~~~ 376 (413)
++..
T Consensus 375 ~~~~ 378 (508)
T PRK12266 375 LAPY 378 (508)
T ss_pred HHHh
Confidence 8733
No 22
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.97 E-value=7.2e-29 Score=205.92 Aligned_cols=350 Identities=21% Similarity=0.192 Sum_probs=225.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHH
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQ 77 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g------~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (413)
+.+...|+|||||+.|..+||+|++++ +.|+|+|+....+ ++|+..+|.+...........+...+.++.++
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~--gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~ 84 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG--GASGKASGFLAKWCQPSIIQPLATLSFKLHEE 84 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc--ccccccchhhHhhhCCcccchhhHHHHHHHHH
Confidence 345688999999999999999999986 7999999988874 56666666666433444467888899999999
Q ss_pred HHHhcCC-ee--EeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEE-ecCCeeecH
Q 015072 78 AQSEIGY-KV--YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVT-TELGGVIKP 152 (413)
Q Consensus 78 ~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~ 152 (413)
+.++++- +- +.....+.+... ++.. -.+.....+++.+...... ..+- ....++++|
T Consensus 85 LsdeydGvnnwgYRaltTws~ka~~en~~-------p~k~pegldWi~~e~v~~~-----------ssiG~t~ttaqvhP 146 (380)
T KOG2852|consen 85 LSDEYDGVNNWGYRALTTWSCKADWENTN-------PAKVPEGLDWIQRERVQKC-----------SSIGSTNTTAQVHP 146 (380)
T ss_pred HHHhhcCcccccceeeeEEEEEeecccCC-------cccCCcchhhhhhHHhhhh-----------eeccCCCccceeCH
Confidence 9887642 21 111112211100 0000 0001111233333222111 1111 234578999
Q ss_pred HHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEe---CC-ccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 153 TKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVT---SS-GEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 153 ~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~-g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
..|++.+...+.+.| |++.+ ..|.++.. +.+ ....+-. .+ ......+++|+++|+|+..+++.+ ++
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~-Gkv~ev~d--Ek~-r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-----rI 217 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVF-GKVKEVSD--EKH-RINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-----RI 217 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEE-eeeEEeec--ccc-cccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-----cc
Confidence 999999999988876 88886 56888865 311 1111211 11 335778999999999999887764 66
Q ss_pred eEEEEEEEEEEecCCCccccccCCCCceEEecC-----CCeeEecCCCCCCCeEEEEeCCCCcCCCCCC-CCCC-CcchH
Q 015072 228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYG-----DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR-PWGP-GPLLD 300 (413)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~ 300 (413)
...+-+.+.++++... +.+..-+..+...+ +...|.++..+ -++.+.+... ..-|+.. +... .+.++
T Consensus 218 sglrihsI~l~~~e~~---v~~~avf~~l~~~~g~ei~~pe~y~rkd~E--vyicg~~~~e-~~lPedsd~v~~npeki~ 291 (380)
T KOG2852|consen 218 SGLRIHSITLSPGEKP---VGPSAVFCELNTMDGLEICKPEEYARKDRE--VYICGETDKE-HLLPEDSDDVFVNPEKII 291 (380)
T ss_pred ceeeeeeEEecCCCCC---CCCceEEEEEEeCCCccccCcceeecCCce--EEEecCCCcc-ccCCcccccceeCHHHHH
Confidence 6667777777644321 22211011111111 22456655432 2333333222 2223332 2222 23778
Q ss_pred HHHHHHHhhcCCCCCCCCCceeeeeeeeccCC-CCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCC
Q 015072 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPD-KDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQ 379 (413)
Q Consensus 301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d-~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~ 379 (413)
.|.+....+.+.+.+. ......+||-|.+.+ +.|+||+.+ .++|+++||+-+|++.||+.|+.+|++|++|+..
T Consensus 292 ~Lk~~a~~v~s~l~ks-~v~~~qacfLP~sn~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~mAEllldgeaT 366 (380)
T KOG2852|consen 292 ELKEMADLVSSELTKS-NVLDAQACFLPTSNITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKCMAELLLDGEAT 366 (380)
T ss_pred HHHHHHHHhhhhhccc-hhhhhhhccccccCCCCCceEeecC----CceEEeecccccceecCcchhHHHHHHHhcccee
Confidence 8888778888888863 455678999999877 999999998 6899999999999999999999999999999999
Q ss_pred ccccccccccccCC
Q 015072 380 GVELRHFRIARFKE 393 (413)
Q Consensus 380 ~~~~~~~~~~R~~~ 393 (413)
+.+.+.|+|.|+.+
T Consensus 367 Sanid~f~p~~~~~ 380 (380)
T KOG2852|consen 367 SANIDPFDPNLGEK 380 (380)
T ss_pred eeecCccCccccCC
Confidence 99999999999753
No 23
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=1.7e-24 Score=200.73 Aligned_cols=344 Identities=21% Similarity=0.210 Sum_probs=223.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecc--cCCccccchHHHHHHHHHHHHHhc
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPEDYYHPMVLESSLLWEQAQSEI 82 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (413)
+.++||+|||||++|+.+|+.++.+|++|+|+|+++... ++|..+.+.+|.. |.......+..++...-+.+.+..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~As--GTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS--GTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccC--cccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999985 5566666777654 333344556666666655554443
Q ss_pred CCeeEeeeeeeeeCCC---ChHHHH-HHHHHHHhCCC-----CccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHH
Q 015072 83 GYKVYFKAHQFDMGPS---ENKSLR-SVIASCRKNSV-----PHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPT 153 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~g~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
.. +..+...+....+ ....+. .+.......++ ..+.++..+.....|. ++ ++...+.+...++++|+.
T Consensus 88 PH-~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~-l~-~~~l~ga~~y~D~~vdda 164 (532)
T COG0578 88 PH-LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPA-LK-KDGLKGAFRYPDGVVDDA 164 (532)
T ss_pred cc-ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcc-cc-hhhccceEEEccceechH
Confidence 22 2333333332222 111121 11111112232 4577777778888887 55 445555666677889999
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc--EEEeCeEEEcCCcChhhhhhhhcCCC----
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE--EFWGKKCVVTAGAWVGKLVKKISGLE---- 224 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~vV~A~G~~~~~l~~~~~g~~---- 224 (413)
+++-.....+.+.|.++++.++|+++.+ ++ +.+.|+..| |+ +++|+.||+|||+|+.++++.. +..
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~r--e~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~-~~~~~~~ 239 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRR--EG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA-GLEQSPH 239 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeee--cC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh-cccCCCC
Confidence 9999888999999999999999999999 73 344554432 33 6999999999999999998877 333
Q ss_pred cceeEEEEEEEEEEecCCCccccccCCCCceE-Eec-CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHH
Q 015072 225 LPIQAVETSVCYWRIKEGDEADYAVGGDFPSF-ASY-GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL 302 (413)
Q Consensus 225 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (413)
..++|.+|.++++.-.-... .+.+ ... +.+.+|.+|... ..+.++++...+.+|+....+ ++.++.|
T Consensus 240 ~~vr~skGsHlVv~~~~~~~--------~a~~~~~~~d~r~~f~iP~~~--~~liGTTD~~~~~~~~~~~~~-~eEidyl 308 (532)
T COG0578 240 IGVRPSKGSHLVVDKKFPIN--------QAVINRCRKDGRIVFAIPYEG--KTLIGTTDTDYDGDPEDPRIT-EEEIDYL 308 (532)
T ss_pred ccceeccceEEEecccCCCC--------ceEEeecCCCCceEEEecCCC--CEEeeccccccCCCcccCCCC-HHHHHHH
Confidence 46999999998886311111 2222 232 556788888864 444555433333344443322 2379999
Q ss_pred HHHHHh-hcCCCCCCCCCceeeeeeeeccCCCCe---------EEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072 303 KELIQG-RFAGRVDSSGPAATQLCMYSMTPDKDF---------VIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL 372 (413)
Q Consensus 303 ~~~~~~-~~p~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~ 372 (413)
++.++. +-|.+.. ..+...|+|+||...|+.+ ++-.+... .+++..+| | =+|.--..|+.+.+.
T Consensus 309 l~~~~~~~~~~l~~-~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~--~glltv~G--G-KlTTyR~maE~a~d~ 382 (532)
T COG0578 309 LDAVNRYLAPPLTR-EDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAEL--AGLLTVAG--G-KLTTYRKMAEDALDA 382 (532)
T ss_pred HHHHHhhhhccCCh-hheeeeeeeeeeccCCCCCchhhccCceEEEecCCC--CCeEEEec--c-hhHHhHHHHHHHHHH
Confidence 999994 4456665 3678899999998765443 33323322 45666554 3 245555677777777
Q ss_pred HHc
Q 015072 373 VLS 375 (413)
Q Consensus 373 i~~ 375 (413)
+++
T Consensus 383 v~~ 385 (532)
T COG0578 383 VCE 385 (532)
T ss_pred HHH
Confidence 763
No 24
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.94 E-value=1.8e-24 Score=208.94 Aligned_cols=322 Identities=16% Similarity=0.210 Sum_probs=218.3
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC----CccccchHHHHHHHHHHHHHhcCCeeEeeeeeeeeCC-
Q 015072 23 AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGP- 97 (413)
Q Consensus 23 A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (413)
|+.|+++|++|+|||+++.+ .++|..+.+.++..+. .....+.+......|.++... .+.+.+.+.+..
T Consensus 1 ArdLa~rGl~V~llEk~d~~--~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~----~~~~~g~L~va~~ 74 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLA--HGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH----CVEDTGGLFITLP 74 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcc--cccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH----hccCCCceEEecC
Confidence 67899999999999998765 4677777777775431 111122222334445544332 344556665542
Q ss_pred -CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceE
Q 015072 98 -SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEV 176 (413)
Q Consensus 98 -~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V 176 (413)
.+...+..+...+...|++.++++++++.+.+|. ++ +....+++.+ ++.+||.+++..+.+.+.++|++++++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V 151 (516)
T TIGR03377 75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPN-LN-PDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKV 151 (516)
T ss_pred cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCC-CC-hhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 2334456666777788888999999999999998 54 3455677777 689999999999999999999999999999
Q ss_pred EEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCC
Q 015072 177 KTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGG 251 (413)
Q Consensus 177 ~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (413)
++|.. +++ ..+.|++ .+|+ ++.|+.||+|+|+|+..+.+.. |..+|+.|.+|+++.++... ...+
T Consensus 152 ~~i~~--~~~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~lv~~~~~--~~~~---- 221 (516)
T TIGR03377 152 TGLIR--EGG-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFPAKGALLIMNHRI--NNTV---- 221 (516)
T ss_pred EEEEE--ECC-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc-CCCCceecceEEEEEECCcc--cccc----
Confidence 99998 632 2223332 2342 6999999999999999998876 77899999999998875211 1111
Q ss_pred CCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccC
Q 015072 252 DFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTP 331 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~ 331 (413)
.+......+. .|++|. + +..++|++.....+++... ...+.++.+.+.+.+++|.+... .++..|+|+||...
T Consensus 222 -~~~~~~~~~g-~~~~P~-~--~~~liGtT~~~~~~~~~~~-~~~~~v~~ll~~~~~~~P~l~~~-~i~~~~aGvRPl~~ 294 (516)
T TIGR03377 222 -INRCRKPSDA-DILVPG-D--TISIIGTTSERIDDPDDLP-VTQEEVDVLLREGAKLAPMLAQT-RILRAFAGVRPLVA 294 (516)
T ss_pred -cccccCCCCC-cEEEEC-C--CeEEEecCCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcccccC-CEEEEEeecccccC
Confidence 1111111222 456674 2 4444444322212222211 12237899999999999999864 67889999999764
Q ss_pred CC----------C-eEEec--CCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072 332 DK----------D-FVIDF--LGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS 375 (413)
Q Consensus 332 d~----------~-p~ig~--~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~ 375 (413)
+. . .+++. .++. +|++.++| |+ +|.++.+|+.++++++.
T Consensus 295 ~~~~~~~~~~sR~~~i~~~~~~~~~--~g~i~i~G--Gk-ltt~r~~Ae~~~d~~~~ 346 (516)
T TIGR03377 295 VDDDPSGRNISRGIVLLDHAERDGL--PGFITITG--GK-LTTYRLMAEWATDVVCK 346 (516)
T ss_pred CCCCCCccccCCCeEEeecccccCC--CCeEEEec--ch-HHHHHHHHHHHHHHHHH
Confidence 32 2 35552 2344 88999887 43 99999999999999974
No 25
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.93 E-value=1.7e-23 Score=198.56 Aligned_cols=228 Identities=15% Similarity=0.153 Sum_probs=163.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCC-CCCCCCCCCcceeccc-----CCcc---ccch---------
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLH-HRGSSHGESRTIRATY-----PEDY---YHPM--------- 67 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~-~~~~s~~~~~~~~~~~-----~~~~---~~~~--------- 67 (413)
+||+|||||++|+++|++|++. |.+|+|+|+....+ +.+..+.++|..+... .... ...+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 5999999999999999999997 99999999976433 2222224544443332 2211 1122
Q ss_pred HHHHHHHHHHHHHh--cC--CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCC--Cccc-cCHHHHHHhcCCcccC---
Q 015072 68 VLESSLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQV-LDCRQVLQKYSGRIEI--- 135 (413)
Q Consensus 68 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~-l~~~~~~~~~p~~~~~--- 135 (413)
...+.++|..+.+. .. .+++.+.+.+.+. ..+.+.++...+.++..++ .+++ ++++++.+.+|. +..
T Consensus 81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~-l~~~r~ 159 (483)
T TIGR01320 81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPL-MAAGRD 159 (483)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCC-cccCCC
Confidence 23466777766654 11 2223457777665 3344556677777777776 3555 799999999998 442
Q ss_pred -CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcC
Q 015072 136 -PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTA 209 (413)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~ 209 (413)
.....+++.+.++.+||..+++.|.+.+++.|++++++++|++|.. +++ +.+.+.+ .+|+ +++||+||+|+
T Consensus 160 ~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AA 236 (483)
T TIGR01320 160 FSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSD-GSWTVTVKNTRTGGKRTLNTRFVFVGA 236 (483)
T ss_pred CCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CeEEEEEeeccCCceEEEECCEEEECC
Confidence 2356799999999999999999999999999999999999999988 632 3455542 3342 58999999999
Q ss_pred CcChhhhhhhhcCCC----cceeEEEEEEEEEEec
Q 015072 210 GAWVGKLVKKISGLE----LPIQAVETSVCYWRIK 240 (413)
Q Consensus 210 G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~~ 240 (413)
|+|+..+++.+ |+. .++.|.+|+++.++.+
T Consensus 237 G~~s~~La~~~-Gi~~~~~~~i~P~~Gq~l~l~~~ 270 (483)
T TIGR01320 237 GGGALPLLQKS-GIPEVKGFAGFPVSGLFLRCGNP 270 (483)
T ss_pred CcchHHHHHHc-CCCcCCCCceeeeeEEEEEeCCH
Confidence 99999998876 653 5789999999877633
No 26
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.93 E-value=1.3e-23 Score=198.48 Aligned_cols=227 Identities=20% Similarity=0.237 Sum_probs=165.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccCCCCC-CCCCCCCCcceecccCC----ccccchHHHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFDFLHH-RGSSHGESRTIRATYPE----DYYHPMVLESSLLWEQ 77 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g-~~V~lvE~~~~~~~-~~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 77 (413)
+.++||+|||||++|+++|++|++. + .+|+||||.+..+. .+...++++.++..... +.....+..+.+.+.+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~ 122 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN 122 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999996 3 69999999864321 11123344444332111 1123344455666666
Q ss_pred HHHhcC----CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccC-------CCCeEEEEe
Q 015072 78 AQSEIG----YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEI-------PENWVGVTT 144 (413)
Q Consensus 78 ~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~-------~~~~~~~~~ 144 (413)
+...+. ..++.+.+.+.+. ..+.+.++...+.++..+.++++++.+++.+.+|. +.. +....+++.
T Consensus 123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~-v~~~~~~~~~~e~~~Al~~ 201 (497)
T PTZ00383 123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPR-VVLKNNHTLREEPLAALYV 201 (497)
T ss_pred HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcc-cccCccccccccceEEEEe
Confidence 655432 2345667777664 33344566667777777777899999999999998 431 345678898
Q ss_pred cCC-eeecHHHHHHHHHHHHHH----cC--CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhh
Q 015072 145 ELG-GVIKPTKAVSMFQTLAIK----NG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLV 217 (413)
Q Consensus 145 ~~~-~~~~~~~~~~~l~~~~~~----~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~ 217 (413)
+.+ +.+|+..+++.+.+.+++ .| ++++++++|++|.. .+ ++.+.|++++|+ ++||+||+|+|+|+..++
T Consensus 202 p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S~~La 277 (497)
T PTZ00383 202 PNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SN-DSLYKIHTNRGE-IRARFVVVSACGYSLLFA 277 (497)
T ss_pred CCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cC-CCeEEEEECCCE-EEeCEEEECcChhHHHHH
Confidence 877 689999999999999998 77 78899999999998 63 246788888886 999999999999999998
Q ss_pred hhhcCC--CcceeEEEEEEEEE
Q 015072 218 KKISGL--ELPIQAVETSVCYW 237 (413)
Q Consensus 218 ~~~~g~--~~p~~~~~~~~~~~ 237 (413)
+.. |+ ..++.|.+|+....
T Consensus 278 ~~~-Gi~~~~~i~Pv~G~~~~~ 298 (497)
T PTZ00383 278 QKM-GYGLEYSCLPVAGSFYFS 298 (497)
T ss_pred HHh-CCCCCCCEEecCceEEEc
Confidence 876 64 67889999987544
No 27
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=180.17 Aligned_cols=315 Identities=14% Similarity=0.028 Sum_probs=205.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCCCCCCCCCCcceeccc----CCccccchHHHHHHHH
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESSLLW 75 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g-------~~V~lvE~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (413)
..+|+|||+|+.|+++|+.+.+.+ .+|++++-.... ...+.+.+|.+++.. +.....++.......|
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e--~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l 80 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE--DTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL 80 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc--ccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence 478999999999999999988843 589999766555 456677778777664 2222445666666666
Q ss_pred HHHHHhc--CCeeE-eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecH
Q 015072 76 EQAQSEI--GYKVY-FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKP 152 (413)
Q Consensus 76 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
..+.... +..-. .-.+...... +.+.+....+...-+.++.++..++. .+|. .+...........++
T Consensus 81 ~~l~rs~~a~~aGV~l~sg~~ls~~---e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~------~~~~G~~~Tt~~sE~ 150 (342)
T KOG3923|consen 81 AHLARSEEAGEAGVCLVSGHILSDS---ESLDDQQRSWGDIVYGFRDLTERELL-GFPD------YSTYGIHFTTYLSEG 150 (342)
T ss_pred HHHhccccccccceEEeeeeeeccC---CCchhhhhhHHhhhhhhhcCCHHHhc-CCCC------ccccceeEEEeeccc
Confidence 6665521 11111 1112222211 22233333444444556788887775 4443 222222333456677
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEE
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVET 232 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~ 232 (413)
..|+.+|.+.+.++|+++. ..+|+++.. - .+ -.+|.||+|+|.|++.|..+- .++|.||
T Consensus 151 ~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--~----------~~---~~~DVivNCtGL~a~~L~gDd-----~~yPiRG 209 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEFV-QRRVESLEE--V----------AR---PEYDVIVNCTGLGAGKLAGDD-----DLYPIRG 209 (342)
T ss_pred hhhhHHHHHHHHhcCcEEE-EeeeccHHH--h----------cc---CCCcEEEECCccccccccCCc-----ceeeccc
Confidence 8999999999999999997 677877766 3 11 248999999999998876543 2999999
Q ss_pred EEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCC
Q 015072 233 SVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAG 312 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~ 312 (413)
+++.++++= . ++-.+.+..+ .|++|..+ +...++.....+++.+..+. ...++++.+.++.|.
T Consensus 210 qVl~V~ApW------v---khf~~~D~~~--ty~iP~~~--~V~lGg~~Q~g~w~~ei~~~----D~~dIl~rc~aL~P~ 272 (342)
T KOG3923|consen 210 QVLKVDAPW------V---KHFIYRDFSR--TYIIPGTE--SVTLGGTKQEGNWNLEITDE----DRRDILERCCALEPS 272 (342)
T ss_pred eEEEeeCCc------e---eEEEEecCCc--cEEecCCc--eEEEccccccCcccCcCChh----hHHHHHHHHHHhCcc
Confidence 999887332 1 1222222221 58888764 55556554444444333222 678889999999999
Q ss_pred CCCCCCCceeeeeeeeccCCCC--e-EEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH
Q 015072 313 RVDSSGPAATQLCMYSMTPDKD--F-VIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL 374 (413)
Q Consensus 313 ~~~~~~~~~~~~g~~~~t~d~~--p-~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~ 374 (413)
+.+. .++..|+|+||..+.-. + ++..-+.. .-+....||||.|+++++++|-..+.++.
T Consensus 273 l~~a-~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~--~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~ 334 (342)
T KOG3923|consen 273 LRHA-EIIREWVGLRPGRKQVRLEAELRTRGGKR--LTVVHNYGHGGNGFTLGWGTALEAAKLVL 334 (342)
T ss_pred cccc-eehhhhhcccCCCCceeeeeeeecCCCcc--ceeEeeccCCCCceecccchHHHHHHHHH
Confidence 9984 78999999999877621 1 12221211 33589999999999999999988887776
No 28
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.92 E-value=4.2e-23 Score=194.16 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=171.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcc-cCCCCCCCCCCCCCcceec-----ccCCcc---ccchH-----
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQ-FDFLHHRGSSHGESRTIRA-----TYPEDY---YHPMV----- 68 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~-~~~~~~~~~s~~~~~~~~~-----~~~~~~---~~~~~----- 68 (413)
+..+||+|||||++|+++|+.|++. +.+|+|+|+ +..+...+..++++|..+. .|.... ...+.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 4568999999999999999999998 899999999 5333222222444444433 444332 33344
Q ss_pred ----HHHHHHHHHHHHh--cC--CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCC--Ccccc-CHHHHHHhcCCcccC
Q 015072 69 ----LESSLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQVL-DCRQVLQKYSGRIEI 135 (413)
Q Consensus 69 ----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~l-~~~~~~~~~p~~~~~ 135 (413)
..+.++|..+.+. ++ .+++.+.+.+.+. ..+.+.++..++.++..++ .++++ +.+++.+.+|. +..
T Consensus 84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~-l~~ 162 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPL-MMP 162 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCc-ccC
Confidence 5667788776652 22 2346677777655 3445566777777888777 78999 79999999998 542
Q ss_pred C----CCeEEEEecCCeeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeE
Q 015072 136 P----ENWVGVTTELGGVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKC 205 (413)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~v 205 (413)
. ....+++.+.++.+|+..+.+.|.+.+.+ .|++++++++|++|.. .+ ++.|.+. +.+++ +++||+|
T Consensus 163 ~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~-d~~w~v~v~~t~~g~~~~i~Ad~V 239 (497)
T PRK13339 163 GREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LS-DGGWEVTVKDRNTGEKREQVADYV 239 (497)
T ss_pred CCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CC-CCCEEEEEEecCCCceEEEEcCEE
Confidence 2 45678999999999999999999999865 4899999999999987 52 2446664 44452 5899999
Q ss_pred EEcCCcChhhhhhhhcCCC----cceeEEEEEEEEEEe
Q 015072 206 VVTAGAWVGKLVKKISGLE----LPIQAVETSVCYWRI 239 (413)
Q Consensus 206 V~A~G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~ 239 (413)
|+|+|+|+..+++.+ |.. .++.|++|+++.++.
T Consensus 240 V~AAGawS~~La~~~-Gi~~~~~~~i~PvkGq~l~l~~ 276 (497)
T PRK13339 240 FIGAGGGAIPLLQKS-GIPESKHLGGFPISGQFLRCTN 276 (497)
T ss_pred EECCCcchHHHHHHc-CCCccCCCceEeeeEEEEEecC
Confidence 999999999998877 653 689999999988763
No 29
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.90 E-value=7.1e-22 Score=187.55 Aligned_cols=229 Identities=17% Similarity=0.163 Sum_probs=163.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC-CCCCCCcceecc-----cCCc---cccchH-----
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG-SSHGESRTIRAT-----YPED---YYHPMV----- 68 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~-~s~~~~~~~~~~-----~~~~---~~~~~~----- 68 (413)
+.++||+|||||++|+++|++|+++ |++|+|+||....+... .++.++|..+.. |... ...++.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~ 82 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI 82 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence 4568999999999999999999985 78999999986543222 222455544443 2211 111221
Q ss_pred ----HHHHHHHHHHHHhcCC--e---eEeeeeeeeeCC--CChHHHHHHHHHHHhCCC--Cccc-cCHHHHHHhcCCccc
Q 015072 69 ----LESSLLWEQAQSEIGY--K---VYFKAHQFDMGP--SENKSLRSVIASCRKNSV--PHQV-LDCRQVLQKYSGRIE 134 (413)
Q Consensus 69 ----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~--~~~~-l~~~~~~~~~p~~~~ 134 (413)
..+.++|..+.+. ++ + ++.+.+.+.+.. .+.+.++...+.++..++ .+++ ++.+++.+.+|. +.
T Consensus 83 ~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~-l~ 160 (494)
T PRK05257 83 NEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPL-MM 160 (494)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcc-cc
Confidence 3456777666554 32 1 234666666543 234455666677777775 3566 489999999998 42
Q ss_pred ----CCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCe
Q 015072 135 ----IPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKK 204 (413)
Q Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~ 204 (413)
......+++.+.++.+|+..+++.|.+.+++.| ++++++++|+++.. .++ +.|.+.+ .+|+ ++.|++
T Consensus 161 ~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~d-g~~~v~~~~~~~G~~~~i~A~~ 237 (494)
T PRK05257 161 EGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDD-GSWTVTVKDLKTGEKRTVRAKF 237 (494)
T ss_pred cCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCC-CCEEEEEEEcCCCceEEEEcCE
Confidence 235677999999999999999999999999887 89999999999988 632 3355543 3353 599999
Q ss_pred EEEcCCcChhhhhhhhcCCC----cceeEEEEEEEEEEe
Q 015072 205 CVVTAGAWVGKLVKKISGLE----LPIQAVETSVCYWRI 239 (413)
Q Consensus 205 vV~A~G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~ 239 (413)
||+|+|+|+..+++.. |.. .++.|++|+++..+.
T Consensus 238 VVvaAGg~s~~L~~~~-Gi~~~~~~~i~PvrGq~l~~~~ 275 (494)
T PRK05257 238 VFIGAGGGALPLLQKS-GIPEAKGYGGFPVSGQFLVCEN 275 (494)
T ss_pred EEECCCcchHHHHHHc-CCCccCCCCeeeeeEEEEEcCC
Confidence 9999999999998876 654 478999999987763
No 30
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.87 E-value=6.4e-20 Score=154.89 Aligned_cols=354 Identities=18% Similarity=0.167 Sum_probs=234.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceeccc--CC-ccccchHHHHHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--PE-DYYHPMVLESSLLWEQAQ 79 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 79 (413)
..++|++|||||+.|++.|++|.-+ +.+|.|+|+....+ .-.|..+++.+|... .. .--.+++-++..+.-+++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la-~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA-VHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc-eeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 3579999999999999999999887 89999999987765 345556777777643 22 223467788888888888
Q ss_pred HhcCCeeEeeeeeeeeCCC--ChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHH
Q 015072 80 SEIGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAV 156 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++..++ +.+.|.+.+... +...++.+.......+++ .++++..++.+..|. -....++++|..|.+|-..+.
T Consensus 125 ~e~~Ip-yKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~----crgvkAl~sPhtGIvD~~~v~ 199 (453)
T KOG2665|consen 125 DEKKIP-YKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPY----CRGVKALLSPHTGIVDWGSVT 199 (453)
T ss_pred hhcCCC-hhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChh----hhhhhhhcCCCcceeehHHHH
Confidence 877776 466777766533 344566677666667764 689999999999887 456778999999999999999
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCC---CcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC-c-ceeEEE
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR---GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE-L-PIQAVE 231 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~---~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~-~-p~~~~~ 231 (413)
..+.+.+...|.++.++-++..+.. .... -.+.|....+++++++.||-|+|..+..+.... |.. . -+.|.+
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~--n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~s-gc~~dPriVpfr 276 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQ--NKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALS-GCELDPRIVPFR 276 (453)
T ss_pred HHHHHHHHHhcccccccceeccchh--ccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHh-CCCCCCeeeecc
Confidence 9999999999999999999999988 5221 234455555778999999999999998775544 532 2 355777
Q ss_pred EEEEEEEecC--CCcccccc--CCCCceEEecCCCeeEecCCCCCC------CeE--EEEeCCCCcCCCCC---------
Q 015072 232 TSVCYWRIKE--GDEADYAV--GGDFPSFASYGDPHVYGTPSLEYP------GLI--KIALHRGYLCDPDR--------- 290 (413)
Q Consensus 232 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~------g~~--~~~~~~~~~~~~~~--------- 290 (413)
|..+.+.... .....+.+ +..+|.. .+-..|+++.. +.+ .-..+...+..+..
T Consensus 277 G~ylll~~ek~h~vk~niyPvpd~RFpfl------GvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg 350 (453)
T KOG2665|consen 277 GEYLLLKPEKLHLVKGNIYPVPDPRFPFL------GVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSG 350 (453)
T ss_pred chhhhcChHHhccccCceeeCCCCCCccc------cccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCc
Confidence 7655443111 00111111 1111110 12333433311 111 11111111111100
Q ss_pred --------CCCCCCc-----chHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCC------CeEEecCCCCCCCCEEEE
Q 015072 291 --------RPWGPGP-----LLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDK------DFVIDFLGGELGEDVVVA 351 (413)
Q Consensus 291 --------~~~~~~~-----~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~------~p~ig~~~~~~~~~~~~~ 351 (413)
.++...+ .+....+.+++++|++++. .+....+|+|+..-|+ .+++..-.....|.+...
T Consensus 351 ~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~-di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~ 429 (453)
T KOG2665|consen 351 DTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDS-DIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHV 429 (453)
T ss_pred hHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCcccccc-ccccCcccccchhccCCCCCchheEEecCccccccceEEe
Confidence 1222221 3444457899999999984 5667789999654332 245543333335778888
Q ss_pred eCCCccccccchHHHHHHHHHHH
Q 015072 352 GGFSGHGFKMAPVVGRILADLVL 374 (413)
Q Consensus 352 ~G~~~~G~~~a~~~a~~~a~~i~ 374 (413)
-+--+-|.|.+.++|+++|+.++
T Consensus 430 rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 430 RNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred cCCCCccchhhHHHHHHHHHHhc
Confidence 88788999999999999998875
No 31
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.81 E-value=1.2e-19 Score=163.83 Aligned_cols=340 Identities=16% Similarity=0.153 Sum_probs=195.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccc-------cchHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYY-------HPMVLESSLLW 75 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~ 75 (413)
..++||+|||||.+|.-+|+-.+-+|++|.|||++++.+|+ |..+...+|... -.... .++..+++...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT--SSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER 142 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT--SSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNER 142 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc--cccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999998643 333333333321 11111 12223333322
Q ss_pred HHHHHhcC-----CeeE------eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEe
Q 015072 76 EQAQSEIG-----YKVY------FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTT 144 (413)
Q Consensus 76 ~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 144 (413)
..+.+... +++. ++...++...+-. ++....+. --...++++++..+.+|- ++ .+...+...
T Consensus 143 ~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~Y----D~vAG~k~-Lk~S~~lSk~~alE~fPm-L~-~~~L~Ga~V 215 (680)
T KOG0042|consen 143 ANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIY----DLVAGSKN-LKSSYFLSKKEALEIFPM-LR-KDNLKGAMV 215 (680)
T ss_pred HHHhhcCccccCCcceeeehhhhhhhhheeecceee----eeeccccc-cccceeecHHHHHHhCcc-cc-ccCceeEEE
Confidence 22222110 1111 1111111110000 00000000 012378899999999998 66 455556556
Q ss_pred cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Ccc--EEEeCeEEEcCCcChhhhhhh
Q 015072 145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SGE--EFWGKKCVVTAGAWVGKLVKK 219 (413)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~--~i~ad~vV~A~G~~~~~l~~~ 219 (413)
..+|..|..++.-.+.-.+.++|..+..+.+|.++.+ +++++...++.. .|+ +|+|+.||+|||+++..+.++
T Consensus 216 YyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llk--d~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 216 YYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLK--DKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred EecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhh--CCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 6667778888888888788889999998999999998 644333333322 233 789999999999999988776
Q ss_pred hcCCCcc-eeEEEEEEEEEEecCCCccccccCCCCce--EEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCC
Q 015072 220 ISGLELP-IQAVETSVCYWRIKEGDEADYAVGGDFPS--FASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPG 296 (413)
Q Consensus 220 ~~g~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
.....-| +.|.-|..+.+. . -+-+ ..+-. ....+++.+|..|+.. -.+.++++.. .++.......+
T Consensus 294 dd~~~~~i~~pSsGvHIVlP--~----yY~P-~~mGlldP~TsDgRViFflPWqg--~TIaGTTD~p--t~v~~~P~PtE 362 (680)
T KOG0042|consen 294 DDEDAKPICVPSSGVHIVLP--G----YYCP-ENMGLLDPKTSDGRVIFFLPWQG--KTIAGTTDIP--TSVTHSPTPTE 362 (680)
T ss_pred cccccCceeccCCceeEEcc--c----ccCC-cccccccCCCCCCcEEEEeccCC--ceeeccCCCC--CCCCCCCCCCH
Confidence 5222233 345556555443 1 0111 11111 1233456788888752 2344443322 22232333333
Q ss_pred cchHHHHHHHHhhcCCCCCC--CCCceeeeeeeeccCCCCe-----------EEecCCCCCCCCEEEEeCCCccccccch
Q 015072 297 PLLDSLKELIQGRFAGRVDS--SGPAATQLCMYSMTPDKDF-----------VIDFLGGELGEDVVVAGGFSGHGFKMAP 363 (413)
Q Consensus 297 ~~~~~l~~~~~~~~p~~~~~--~~~~~~~~g~~~~t~d~~p-----------~ig~~~~~~~~~~~~~~G~~~~G~~~a~ 363 (413)
+.++.|++.+++++.--.++ .++...|+|+||...|-.+ +|..-+ +|+..++| | =||.=-
T Consensus 363 ~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaG--G-KWTTyR 435 (680)
T KOG0042|consen 363 DDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAG--G-KWTTYR 435 (680)
T ss_pred HHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEec--C-cchhHH
Confidence 48999999999988544222 3567889999998766533 332222 56666664 2 244444
Q ss_pred HHHHHHHHHH
Q 015072 364 VVGRILADLV 373 (413)
Q Consensus 364 ~~a~~~a~~i 373 (413)
..|+.-.+.+
T Consensus 436 ~MAEeTVd~a 445 (680)
T KOG0042|consen 436 HMAEETVDAA 445 (680)
T ss_pred HHHHHHHHHH
Confidence 4565554443
No 32
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.77 E-value=8.1e-17 Score=151.92 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=98.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||||++|+++|+.|+++|++|+|+|+...++....+ ++.+. ... ...++..+.......
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~---gg~l~--------~~~---~e~l~~~~~~~~~~~ 69 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT---GGRLY--------AHS---LEHIIPGFADSAPVE 69 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccc---cceec--------hhh---HHHHhhhhhhcCccc
Confidence 4699999999999999999999999999999998766422111 11110 000 011122221111111
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.......+.+..... .....+.+.. ... .......++...+.+.|.+.+++
T Consensus 70 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~-----~~~-----------~~~~~~~v~R~~fD~~L~~~a~~ 120 (428)
T PRK10157 70 RLITHEKLAFMTEKS-------------AMTMDYCNGD-----ETS-----------PSQRSYSVLRSKFDAWLMEQAEE 120 (428)
T ss_pred ceeeeeeEEEEcCCC-------------ceeecccccc-----ccC-----------CCCCceeeEHHHHHHHHHHHHHH
Confidence 100000010000000 0000000000 000 00112345567888889999999
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA 229 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~ 229 (413)
.|++++.+++|+++.. + ++.+.+.+.++.++.|+.||.|+|.++ .+.+.+ ++..+..+
T Consensus 121 ~Gv~i~~~~~V~~i~~--~--~g~v~~v~~~g~~i~A~~VI~A~G~~s-~l~~~l-gl~~~~~~ 178 (428)
T PRK10157 121 AGAQLITGIRVDNLVQ--R--DGKVVGVEADGDVIEAKTVILADGVNS-ILAEKL-GMAKRVKP 178 (428)
T ss_pred CCCEEECCCEEEEEEE--e--CCEEEEEEcCCcEEECCEEEEEeCCCH-HHHHHc-CCCCCCCC
Confidence 9999999999999987 6 233333334555699999999999876 455555 65544444
No 33
>PRK06185 hypothetical protein; Provisional
Probab=99.75 E-value=3e-16 Score=148.26 Aligned_cols=218 Identities=12% Similarity=0.048 Sum_probs=121.1
Q ss_pred ecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCc--EEEEeCCcc-EEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072 150 IKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGG--VTVVTSSGE-EFWGKKCVVTAGAWVGKLVKKISGLEL 225 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~ad~vV~A~G~~~~~l~~~~~g~~~ 225 (413)
+....+.+.|.+.+.+. |++++++++|+++.. +++ .. +.+.+.+|+ +++||.||.|+|.++. +.+.+ ++..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--~~~-~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~-gi~~ 179 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--EGG-RVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALA-GLEV 179 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--eCC-EEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHc-CCCc
Confidence 44467778888877664 899999999999988 632 22 344455664 7999999999999985 54544 7766
Q ss_pred ceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072 226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL 305 (413)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (413)
+..++.+.++.+.++.... ... ..+.. ...+..+.+.|.. +.+.+... .++...........+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~--~~~~g~~~llP~~---~~~~i~~~----~~~~~~~~~~~~~~~~~~~~ 247 (407)
T PRK06185 180 REFGAPMDVLWFRLPREPD--DPE-SLMGR--FGPGQGLIMIDRG---DYWQCGYV----IPKGGYAALRAAGLEAFRER 247 (407)
T ss_pred cccCCCceeEEEecCCCCC--CCc-ccceE--ecCCcEEEEEcCC---CeEEEEEE----ecCCCchhhhhhhHHHHHHH
Confidence 6667777766665443211 000 01111 1223345566653 32322221 11111111111145667777
Q ss_pred HHhhcCCCCCCCCCceeeee--e--------eeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH-
Q 015072 306 IQGRFAGRVDSSGPAATQLC--M--------YSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL- 374 (413)
Q Consensus 306 ~~~~~p~~~~~~~~~~~~~g--~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~- 374 (413)
+.+.+|.+.+....+..|.. . ..+..++..++| +-......++|+|+.+|.--|..+++.+.
T Consensus 248 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~nlgl~Da~~La~~l~~ 320 (407)
T PRK06185 248 VAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIG-------DAAHAMSPVGGVGINLAIQDAVAAANILAE 320 (407)
T ss_pred HHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEe-------ccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 77777775421011111111 1 123446666777 44556666789999999966666666654
Q ss_pred ---cCCCCcccccccccccc
Q 015072 375 ---SGEAQGVELRHFRIARF 391 (413)
Q Consensus 375 ---~~~~~~~~~~~~~~~R~ 391 (413)
.+......++.|.-.|.
T Consensus 321 ~~~~~~~~~~~L~~Y~~~R~ 340 (407)
T PRK06185 321 PLRRGRVSDRDLAAVQRRRE 340 (407)
T ss_pred HhccCCccHHHHHHHHHHhh
Confidence 23221234566665553
No 34
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.71 E-value=2e-15 Score=141.83 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=60.6
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCccee
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQ 228 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~ 228 (413)
.++...+.+.|.+.+.+.|++++++++|+++.. + ++.+.+++++|+++++|.||.|+|.++ .+.+.+ ++..+..
T Consensus 109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~-g~~~~~~ 182 (392)
T PRK08773 109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQ--D--ADRVRLRLDDGRRLEAALAIAADGAAS-TLRELA-GLPVSRH 182 (392)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEe--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhh-cCCceEE
Confidence 456678889999999889999999999999988 6 456778777888899999999999998 455544 6655543
Q ss_pred EE
Q 015072 229 AV 230 (413)
Q Consensus 229 ~~ 230 (413)
.+
T Consensus 183 ~~ 184 (392)
T PRK08773 183 DY 184 (392)
T ss_pred Ee
Confidence 33
No 35
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.70 E-value=6e-15 Score=138.12 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=149.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC--
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG-- 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (413)
++|||+|||||++|+++|+.|+++|.+|+|+|+....+....+. +.+... .++++.....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~---~~~~~~---------------~l~~l~~~~~~~ 63 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG---GGLSPR---------------ALEELIPDFDEE 63 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc---ceechh---------------hHHHhCCCcchh
Confidence 36999999999999999999999999999999988775433321 111100 0000000000
Q ss_pred CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEe--cCCeeecHHHHHHHHHH
Q 015072 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTT--ELGGVIKPTKAVSMFQT 161 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 161 (413)
+........++. +.....+.. .....++...+.++|.+
T Consensus 64 i~~~v~~~~~~~----------------------------------------~~~~~~~~~~~~~~y~v~R~~fd~~La~ 103 (396)
T COG0644 64 IERKVTGARIYF----------------------------------------PGEKVAIEVPVGEGYIVDRAKFDKWLAE 103 (396)
T ss_pred hheeeeeeEEEe----------------------------------------cCCceEEecCCCceEEEEhHHhhHHHHH
Confidence 000000000000 000001111 33567788999999999
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEE---EEEE
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV---CYWR 238 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~---~~~~ 238 (413)
.+++.|++++.+++|+++.. +++ +.+.....++.+++|+.||.|+|..+ .+.+.+ +.. ...+....+ -.+.
T Consensus 104 ~A~~aGae~~~~~~~~~~~~--~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~l-g~~-~~~~~~~~~~~~e~~~ 177 (396)
T COG0644 104 RAEEAGAELYPGTRVTGVIR--EDD-GVVVGVRAGDDEVRAKVVIDADGVNS-ALARKL-GLK-DRKPEDYAIGVKEVIE 177 (396)
T ss_pred HHHHcCCEEEeceEEEEEEE--eCC-cEEEEEEcCCEEEEcCEEEECCCcch-HHHHHh-CCC-CCChhheeEEeEEEEe
Confidence 99999999999999999998 632 32333333335699999999999866 455555 544 222222222 2222
Q ss_pred ecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCC--
Q 015072 239 IKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDS-- 316 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~-- 316 (413)
++. ....... ..-.+......+.++.|..+ +.+.+|....... +.... .. ...+.+.+..+.....
T Consensus 178 ~~~-~~~~~~~--~~~~~~~~~~Gy~wifP~~~--~~~~VG~g~~~~~-~~~~~-----~~-~~l~~f~~~~~~~~~~~~ 245 (396)
T COG0644 178 VPD-DGDVEEF--LYGPLDVGPGGYGWIFPLGD--GHANVGIGVLLDD-PSLSP-----FL-ELLERFKEHPAIRKLLLG 245 (396)
T ss_pred cCC-CCceEEE--EecCCccCCCceEEEEECCC--ceEEEEEEEecCC-cCCCc-----hH-HHHHHHHhCcccchhccC
Confidence 220 0000000 00000112233566677654 4333332110111 11111 22 2323333322211100
Q ss_pred CCCceeeeeeeecc-C-------CCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072 317 SGPAATQLCMYSMT-P-------DKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG 376 (413)
Q Consensus 317 ~~~~~~~~g~~~~t-~-------d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~ 376 (413)
.......++..|.. + |+..+|| +..-+...+.|.|+..|..+|+++|+.|.+.
T Consensus 246 ~~~~~~~~~~ip~~g~~~~~~~~~~~~lvG-------DAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~ 306 (396)
T COG0644 246 GKILEYAAGGIPEGGPASRPLVGDGVLLVG-------DAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396)
T ss_pred CceEEEeeeecccCCcCCCccccCCEEEEe-------ccccCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 12344444554442 2 3333444 2233455567889999999999999999854
No 36
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.69 E-value=5.7e-15 Score=138.71 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=103.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHH--HhcC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQ--SEIG 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 83 (413)
+++||+|||||++|+++|+.|++.|++|+|+|+.+.....+.... .+...+...+.+.++.+- +...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~-----------~r~~~l~~~~~~~l~~~g~~~~~~ 72 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWD-----------SRVYAISPSSQAFLERLGVWQALD 72 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCC-----------CceEeecHHHHHHHHHcCchhhhh
Confidence 358999999999999999999999999999999866432111100 111223333444443320 0000
Q ss_pred CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.....+...+.+.... . ..+.........| .....++...+.+.|.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~--------------~~~~~i~~~~l~~~L~~~~ 121 (388)
T PRK07608 73 AARLAPVYDMRVFGDA--------------H---ARLHFSAYQAGVP--------------QLAWIVESSLIERALWAAL 121 (388)
T ss_pred hhcCCcceEEEEEECC--------------C---ceeEeeccccCCC--------------CCEEEEEhHHHHHHHHHHH
Confidence 0000000111110000 0 0000000000000 1124466788899999998
Q ss_pred HHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEE
Q 015072 164 IKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAV 230 (413)
Q Consensus 164 ~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~ 230 (413)
.+.| ++++ ++.|+++.. + ++.+.+++.+|++++||.||.|+|.++. +.+.+ +...+..+.
T Consensus 122 ~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~-~~~~~~~~~ 182 (388)
T PRK07608 122 RFQPNLTWF-PARAQGLEV--D--PDAATLTLADGQVLRADLVVGADGAHSW-VRSQA-GIKAERRPY 182 (388)
T ss_pred HhCCCcEEE-cceeEEEEe--c--CCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhc-CCCcccccc
Confidence 8887 9998 889999987 6 4567788888877999999999999985 54444 665555554
No 37
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.69 E-value=1.7e-14 Score=130.30 Aligned_cols=198 Identities=17% Similarity=0.143 Sum_probs=106.0
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-CccEEEeCeEEEcCCcChhhhhhhhcCCCc-
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGEEFWGKKCVVTAGAWVGKLVKKISGLEL- 225 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~- 225 (413)
..++...+.+.|.+.+.+.|++++++++|+++.. + ++.+.+... ++.++++|.||+|+|.++. +.+.+ +...
T Consensus 86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~--~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~-~~~~~ 159 (295)
T TIGR02032 86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI--H--DDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKL-GLRKE 159 (295)
T ss_pred EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--e--CCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhc-CCCCC
Confidence 4566778889999999999999999999999988 6 344444433 3447999999999999874 54544 4322
Q ss_pred ceeEEEEEEEEEEecCCCccccccCCCCceEEec---CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHH
Q 015072 226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASY---GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL 302 (413)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (413)
+.....+....+..+... ... .....+... .+...|..|..+ +.+.++....... . ..+..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~P~~~--~~~~v~~~~~~~~----~---~~~~~~~~ 226 (295)
T TIGR02032 160 PRELGVAARAEVEMPDEE---VDE-DFVEVYIDRGISPGGYGWVFPKGD--GTANVGVGSRSAE----E---GEDLKKYL 226 (295)
T ss_pred CcceeeEEEEEEecCCcc---cCc-ceEEEEcCCCcCCCceEEEEeCCC--CeEEEeeeeccCC----C---CCCHHHHH
Confidence 112222222233322110 000 001111111 234577777643 4333322110000 0 11133444
Q ss_pred HHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeC-------CCccccccchHHHHHHHHHH
Q 015072 303 KELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGG-------FSGHGFKMAPVVGRILADLV 373 (413)
Q Consensus 303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G-------~~~~G~~~a~~~a~~~a~~i 373 (413)
.+ +.+.+|.+.+. .....+.+..++.....+.. .+++++++- +.|.|+.+|...|.++|+.|
T Consensus 227 ~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-------~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 227 KD-FLARRPELKDA-ETVEVIGAPIPIGRPDDKTV-------RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HH-HHHhCcccccC-cEEeeeceeeccCCCCCccc-------cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 44 44556766542 33444555555432211111 144444333 67899999999999888753
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.68 E-value=5.5e-15 Score=138.48 Aligned_cols=220 Identities=11% Similarity=0.036 Sum_probs=114.5
Q ss_pred eecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 149 VIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
.++...+.+.|.+.+.+ .|++++++++|+++.. + ++.+.+.+++|+++.||.||.|+|.++. +.+.+ +...+.
T Consensus 101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l-~~~~~~ 174 (382)
T TIGR01984 101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIR--N--QDYVRVTLDNGQQLRAKLLIAADGANSK-VRELL-SIPTEE 174 (382)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCChH-HHHHc-CCCCcc
Confidence 45678899999999887 4999999999999988 6 4567788888888999999999999875 54554 544443
Q ss_pred eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHH
Q 015072 228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQ 307 (413)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (413)
.......+...+...... ..........+..+++.|..+.. .+...............+. ..+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 244 (382)
T TIGR01984 175 HDYNQTALIANIRHEQPH-----QGCAFERFTPHGPLALLPLKDNY-RSSLVWCLPSKQADTIANL----PDAEFLAELQ 244 (382)
T ss_pred cccCCEEEEEEEEecCCC-----CCEEEEeeCCCCCeEECcCCCCC-CEEEEEECCHHHHHHHHcC----CHHHHHHHHH
Confidence 322222332222211110 00111111223346667764421 2222111100000000011 1122233333
Q ss_pred hhcCCC-CCC--CCCceeee----eeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCC---
Q 015072 308 GRFAGR-VDS--SGPAATQL----CMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGE--- 377 (413)
Q Consensus 308 ~~~p~~-~~~--~~~~~~~~----g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~--- 377 (413)
+.++.. .+. ......|. ....+..++..++| +-.+...-++|.|+.+|.--|..+++.|....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~ 317 (382)
T TIGR01984 245 QAFGWRLGKITQVGERKTYPLKLRIAETHVHPRVVLIG-------NAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDL 317 (382)
T ss_pred HHHhhhccCeEEcCCccEeecchhhhhheecCCEEEEe-------ecccccCCccccchhhhHHHHHHHHHHHHHhccCc
Confidence 333321 110 00111110 01112223444455 44555666889999999999999998886421
Q ss_pred CCcccccccccccc
Q 015072 378 AQGVELRHFRIARF 391 (413)
Q Consensus 378 ~~~~~~~~~~~~R~ 391 (413)
.....++.|.-.|.
T Consensus 318 ~~~~~l~~Y~~~r~ 331 (382)
T TIGR01984 318 GTYALLQEYLRRRQ 331 (382)
T ss_pred cCHHHHHHHHHHHH
Confidence 11234666666663
No 39
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.68 E-value=8e-16 Score=136.00 Aligned_cols=167 Identities=22% Similarity=0.204 Sum_probs=107.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
+.+||+|||||.+|+++|..++++|++|+|+|+.+..|....-.+.+++....... ++++....+-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-------------~~~~ls~~p~- 67 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-------------PDEFLSRNPG- 67 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-------------HHHHHHhCCC-
Confidence 36899999999999999999999999999999998776544333333332211110 1122111110
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.+.+....-..-.-++++.+.+.+|++...-+ .-+.||. ......+++.|.+.+++
T Consensus 68 ----~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~---~Gr~Fp~-----------------sdkA~~Iv~~ll~~~~~ 123 (408)
T COG2081 68 ----NGHFLKSALARFTPEDFIDWVEGLGIALKEED---LGRMFPD-----------------SDKASPIVDALLKELEA 123 (408)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHhcCCeeEEcc---CceecCC-----------------ccchHHHHHHHHHHHHH
Confidence 00000000000011345555566665432222 1123332 01236889999999999
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.||+++++++|.++.. + +....+.+++|++++||.+|+|+|..|-
T Consensus 124 ~gV~i~~~~~v~~v~~--~--~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 124 LGVTIRTRSRVSSVEK--D--DSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred cCcEEEecceEEeEEe--c--CceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 9999999999999999 7 4678899999978999999999996654
No 40
>PRK06834 hypothetical protein; Provisional
Probab=99.68 E-value=3.3e-14 Score=136.12 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEE
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAV 230 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~ 230 (413)
..+.+.|.+.+++.|++++++++|++++. + ++.+.+++.+|+++++|+||.|+|.++. +.+.+ |+..+-...
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~--~--~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~l-gi~~~g~~~ 171 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQ--D--DTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAA-GIDFPGWDP 171 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhc-CCCCCCCCc
Confidence 45677788888888999999999999998 7 4567777777778999999999999984 44444 766554433
No 41
>PRK06847 hypothetical protein; Provisional
Probab=99.68 E-value=3.2e-14 Score=133.01 Aligned_cols=63 Identities=27% Similarity=0.244 Sum_probs=53.7
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..++...+.+.|.+.+.+.|++++++++|+++.. + ++.+.+.+.+|+++.+|.||.|+|.++.
T Consensus 102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQ--D--DDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE--c--CCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 3456678888999988888999999999999988 6 4567788888888999999999999885
No 42
>PRK08244 hypothetical protein; Provisional
Probab=99.67 E-value=6.3e-14 Score=135.36 Aligned_cols=214 Identities=15% Similarity=0.130 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--eCCc-cEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--TSSG-EEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g-~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
.-..+.+.|.+.+.+.|++++++++|+++.. + ++.+.++ ..+| +++++|+||.|+|.++. +.+.+ ++..+-
T Consensus 98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~l-gi~~~g 171 (493)
T PRK08244 98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQ--D--GDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQA-GIAFPG 171 (493)
T ss_pred cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--c--CCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhc-CCCccC
Confidence 3356677777888888999999999999988 6 3445443 3355 36999999999999884 43433 544322
Q ss_pred eE--EEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072 228 QA--VETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL 305 (413)
Q Consensus 228 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (413)
.. ....+..+....... .....+. ..+..+++.|..+ +.+.+............. .....+++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~g~~~~~P~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 239 (493)
T PRK08244 172 TDATFTAMLGDVVLKDPPP------SSVLSLC-TREGGVMIVPLSG--GIYRVLIIDPERPQVPKD---EPVTLEELKTS 239 (493)
T ss_pred CCcceEEEEEEEEecCCCC------cceeEEE-eCCceEEEEECCC--CeEEEEEEcCCcccccCC---CCCCHHHHHHH
Confidence 11 222222222211110 0011111 2233466667643 433222211000000000 00135566666
Q ss_pred HHhhcCCCCCCCCCceeeeeee--------eccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH---
Q 015072 306 IQGRFAGRVDSSGPAATQLCMY--------SMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL--- 374 (413)
Q Consensus 306 ~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~--- 374 (413)
+.+.++..... ....|...+ .+..++..++| +-.+...-++|+|+.+|..-|..|+..+.
T Consensus 240 l~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~gRv~L~G-------DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l 310 (493)
T PRK08244 240 LIRICGTDFGL--NDPVWMSRFGNATRQAERYRSGRIFLAG-------DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAI 310 (493)
T ss_pred HHHhhCCCCCc--CCeeEEEecccceeeHhhhccCcEEEee-------cceeccCCccccccccchhhHHHHHHHHHHHH
Confidence 66666532211 111122111 23344556666 45566666788888888777755544432
Q ss_pred cCCCCcccccccccccc
Q 015072 375 SGEAQGVELRHFRIARF 391 (413)
Q Consensus 375 ~~~~~~~~~~~~~~~R~ 391 (413)
.|...+..++.|.-.|.
T Consensus 311 ~g~~~~~lL~~Ye~eR~ 327 (493)
T PRK08244 311 KGWAPDWLLDSYHAERH 327 (493)
T ss_pred cCCCCchhhhhhHHHHH
Confidence 24443445677766663
No 43
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.67 E-value=2.4e-15 Score=141.18 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=54.1
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP 226 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p 226 (413)
.++...+.+.|.+.+.+.+...+++++|+++.. + ++.+.+++++|+++++|.||.|+|.++. +.+.+ ++...
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~~ 178 (388)
T PRK07494 107 NIPNWLLNRALEARVAELPNITRFGDEAESVRP--R--EDEVTVTLADGTTLSARLVVGADGRNSP-VREAA-GIGVR 178 (388)
T ss_pred EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEE--c--CCeEEEEECCCCEEEEeEEEEecCCCch-hHHhc-CCCce
Confidence 455577888888888776533377999999988 6 4567788888888999999999999884 54444 54433
No 44
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.66 E-value=3.1e-14 Score=134.33 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=60.4
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCccee
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQ 228 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~ 228 (413)
.++...+.+.|.+.+.+.|++++.+++|++++. + ++.+.|++.+|+++.||.||.|+|.++. +.+.+ +...+..
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vVgAdG~~S~-vR~~l-g~~~~~~ 181 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRR--S--GDDWLLTLADGRQLRAPLVVAADGANSA-VRRLA-GCATREW 181 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCch-hHHhc-CCCcccc
Confidence 455567777888888888999999999999988 6 4567788888888999999999999984 54444 6544443
Q ss_pred EEEEEEE
Q 015072 229 AVETSVC 235 (413)
Q Consensus 229 ~~~~~~~ 235 (413)
.+....+
T Consensus 182 ~~~~~~~ 188 (405)
T PRK05714 182 DYLHHAI 188 (405)
T ss_pred cCCceEE
Confidence 3333333
No 45
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.66 E-value=1.9e-14 Score=135.12 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=56.5
Q ss_pred eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
.++...+.+.|.+.+.+.| ++++++++|+++.. + ++.+.+++++|+++.+|.||.|+|.++. +.+.+ +..
T Consensus 102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l-~~~ 172 (385)
T TIGR01988 102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPR--H--SDHVELTLDDGQQLRARLLVGADGANSK-VRQLA-GIP 172 (385)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--c--CCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHc-CCC
Confidence 4556788899999988887 99999999999988 6 4567788888888999999999999874 44444 443
No 46
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.65 E-value=1.6e-14 Score=136.33 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=58.9
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLEL 225 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~ 225 (413)
..++...+.+.|.+.+.+.|++++++++|+++.. + ++.+.+++++|+++.+|.||.|+|.++. +.+.+ ++..
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~-g~~~ 177 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFET--R--DEGVTVTLSDGSVLEARLLVAADGARSK-LRELA-GIKT 177 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHc-CCCc
Confidence 3567788999999999888999999999999988 6 4567788888888999999999999885 54444 5543
No 47
>PLN02697 lycopene epsilon cyclase
Probab=99.65 E-value=3.3e-14 Score=135.53 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=62.1
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhh-cCCCcc
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKI-SGLELP 226 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~-~g~~~p 226 (413)
.++...+.+.|.+.+.+.|+++ .+++|++|.. + ++.+. +.+.+|.++.|+.||.|+|.++..++... .+...+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~--~--~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~ 262 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITE--A--SDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVC 262 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEE--c--CCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcc
Confidence 5777889999999998899998 4789999987 6 33433 34567778999999999999996554321 122345
Q ss_pred eeEEEEEEEEEE
Q 015072 227 IQAVETSVCYWR 238 (413)
Q Consensus 227 ~~~~~~~~~~~~ 238 (413)
.+...|..+.+.
T Consensus 263 ~Q~a~Gi~ve~~ 274 (529)
T PLN02697 263 VQTAYGVEVEVE 274 (529)
T ss_pred cEEEEEEEEEec
Confidence 677777776554
No 48
>PRK06184 hypothetical protein; Provisional
Probab=99.65 E-value=4e-14 Score=136.98 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCccEEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGEEFWGKKCVVTAGAWVGKLVKKISGLEL 225 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~ 225 (413)
..+.+.|.+.+.+.|++++++++|++++. + .+.+.+.. .++++++||+||.|+|++|. +.+.+ ++..
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~l-gi~~ 178 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQ--D--ADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKAL-GIGF 178 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEE--c--CCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhC-CCCc
Confidence 45667788888888999999999999988 6 34555554 55568999999999999984 44444 5443
No 49
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.65 E-value=5.8e-14 Score=132.25 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072 151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA 229 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~ 229 (413)
+...+.+.|.+.+.+ .|++++++++|+++.. + ++.+.++++++.++.+|.||.|+|.++. +.+.+ +...+..+
T Consensus 110 ~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-~~~~~~~~ 183 (395)
T PRK05732 110 ELHDVGQRLFALLDKAPGVTLHCPARVANVER--T--QGSVRVTLDDGETLTGRLLVAADGSHSA-LREAL-GIDWQQHP 183 (395)
T ss_pred EhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCChh-hHHhh-CCCcccee
Confidence 334566677776655 4799999999999987 6 4567788888878999999999999985 55555 65555555
Q ss_pred EEEEE
Q 015072 230 VETSV 234 (413)
Q Consensus 230 ~~~~~ 234 (413)
....+
T Consensus 184 ~~~~~ 188 (395)
T PRK05732 184 YEQVA 188 (395)
T ss_pred cCCEE
Confidence 43333
No 50
>PRK07190 hypothetical protein; Provisional
Probab=99.64 E-value=1.1e-13 Score=132.36 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
..+.+.|.+.+.+.|++++++++|+++.. + ++++.+.+.+|++++|++||.|+|..+. +.+.+ |+..+-
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~--~--~~~v~v~~~~g~~v~a~~vVgADG~~S~-vR~~l-gi~f~g 177 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIEL--N--QAGCLTTLSNGERIQSRYVIGADGSRSF-VRNHF-NVPFEI 177 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c--CCeeEEEECCCcEEEeCEEEECCCCCHH-HHHHc-CCCccc
Confidence 34566777778888999999999999998 6 4556666677778999999999999773 43433 655443
No 51
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.64 E-value=3.5e-14 Score=133.69 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=52.1
Q ss_pred eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.++...+.+.|.+.+.+.+ ++++++++|+++.. + ++.+.+.+.+|+++.+|.||.|+|.++.
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--D--GDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--C--CCceEEEEcCCCEEecCEEEECCCcChH
Confidence 4566778888888887764 89999999999988 6 4567788888888999999999999986
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.63 E-value=4e-14 Score=133.52 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=51.0
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCC
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGL 223 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~ 223 (413)
..+....+-+.|.+.+++.|++++.+++|+++.. + ++.+. +.+ ++.++.|+.||.|+|..+ .+.+.+ +.
T Consensus 103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~--~--~~~v~~v~~-~~~~i~A~~VI~AdG~~s-~v~~~l-g~ 172 (429)
T PRK10015 103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR--E--GNKVTGVQA-GDDILEANVVILADGVNS-MLGRSL-GM 172 (429)
T ss_pred eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE--e--CCEEEEEEe-CCeEEECCEEEEccCcch-hhhccc-CC
Confidence 3455577888898999999999999999999987 6 23343 444 344699999999999866 344444 44
No 53
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.62 E-value=2.7e-14 Score=133.51 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=115.6
Q ss_pred eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeC-CccEEEeCeEEEcCCcChhhhhhhhcC-CCc
Q 015072 149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGEEFWGKKCVVTAGAWVGKLVKKISG-LEL 225 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~~l~~~~~g-~~~ 225 (413)
.+.-..+.+.|.+.+.+.+ ++++.+++|+.+.. + ++.+.++.+ +|++++||.||-|.|.+|. +.+.+ + ...
T Consensus 100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~--~~~v~v~l~~dG~~~~a~llVgADG~~S~-vR~~~-~~~~~ 173 (387)
T COG0654 100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--D--GDGVTVTLSFDGETLDADLLVGADGANSA-VRRAA-GIAEF 173 (387)
T ss_pred EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--c--CCceEEEEcCCCcEEecCEEEECCCCchH-HHHhc-CCCCc
Confidence 3444678888888888766 99999999999999 7 345567666 8889999999999999884 33333 5 122
Q ss_pred ceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072 226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL 305 (413)
Q Consensus 226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (413)
.-..+....+...+....+. .............+.+.|..+....+..... +...+.......+.+...
T Consensus 174 ~~~~y~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 242 (387)
T COG0654 174 SGRDYGQTALVANVEPEEPH-----EGRAGERFTHAGPFALLPLPDNRSSVVWSLP------PGPAEDLQGLSDEEFLRE 242 (387)
T ss_pred cCCCCCceEEEEEeecCCCC-----CCeEEEEecCCCceEEEecCCCceeEEEECC------hhhHHHHhcCCHHHHHHH
Confidence 22233333333333332110 1011111112222445555432222222211 111111111134445566
Q ss_pred HHhhcCCC--CCCCCCceeeeee--------eeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072 306 IQGRFAGR--VDSSGPAATQLCM--------YSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS 375 (413)
Q Consensus 306 ~~~~~p~~--~~~~~~~~~~~g~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~ 375 (413)
+.+.+|.. ....... .+.-. ..+..++.-++| +-.+...-.+|+|+.+|.--+..|++.|..
T Consensus 243 l~~~~~~~~~~~~~~~~-~~~~~~pl~~~~a~~~~~~Rv~LiG-------DAAH~~~P~~gQG~nlgl~Da~~La~~L~~ 314 (387)
T COG0654 243 LQRRLGERDPLGRVTLV-SSRSAFPLSLRVAERYRRGRVVLIG-------DAAHAMHPLAGQGANLALEDAAALAEALAA 314 (387)
T ss_pred HHHhcCcccccceEEEc-cccccccccchhhhheecCcEEEEe-------eccccCCCccccchhhhhhhHHHHHHHHHH
Confidence 77777766 3210000 11111 122335556666 445555667889999988877777777764
Q ss_pred CCCC---ccccccccccc
Q 015072 376 GEAQ---GVELRHFRIAR 390 (413)
Q Consensus 376 ~~~~---~~~~~~~~~~R 390 (413)
.... ...++.|.-.|
T Consensus 315 ~~~~~~~~~~L~~Y~~~R 332 (387)
T COG0654 315 APRPGADAAALAAYEARR 332 (387)
T ss_pred HhhcCccHHHHHHHHHhh
Confidence 3221 23466666555
No 54
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.60 E-value=2e-13 Score=129.36 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC--Cc-cEEEeCeEEEcCCcChhhhhhhhcCC
Q 015072 153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG-EEFWGKKCVVTAGAWVGKLVKKISGL 223 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~vV~A~G~~~~~l~~~~~g~ 223 (413)
..+.+.|.+.+.+. |++++++++|++++. + ++.+.|+.. ++ .+++||.||.|+|.++. +.+.+ +.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~adlvIgADG~~S~-vR~~~-~~ 189 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEY--Q--QDAATVTLEIEGKQQTLQSKLVVAADGARSP-IRQAA-GI 189 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeeEEEEccCCcceEEeeeEEEEeCCCCch-hHHHh-CC
Confidence 45777777777664 799999999999988 6 345556554 22 36999999999999884 43433 44
No 55
>PRK08013 oxidoreductase; Provisional
Probab=99.60 E-value=2.3e-13 Score=127.96 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=55.8
Q ss_pred eecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072 149 VIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP 226 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p 226 (413)
.+.-..+.+.|.+.+.+. |++++++++|++++. + +..+.++..+|++++||.||.|.|.+|. +.+.+ ++..+
T Consensus 107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~~-~~~~~ 179 (400)
T PRK08013 107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--G--ENEAFLTLKDGSMLTARLVVGADGANSW-LRNKA-DIPLT 179 (400)
T ss_pred EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeEEEEEcCCCEEEeeEEEEeCCCCcH-HHHHc-CCCcc
Confidence 455567888888888775 799999999999988 6 4567777788888999999999999884 43443 55443
No 56
>PRK06126 hypothetical protein; Provisional
Probab=99.60 E-value=4.1e-13 Score=131.43 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 151 KPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
+-..+.+.|.+.+.+. +++++++++|+++.. + .+.+.+.. .+|+ ++++|+||.|+|+++. +.+.+ ++.
T Consensus 124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~l-gi~ 197 (545)
T PRK06126 124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ--D--ADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSL-GIS 197 (545)
T ss_pred CHHHHHHHHHHHHHhCCCceEEeccEEEEEEE--C--CCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhc-CCc
Confidence 3345666777777654 799999999999988 6 33444433 3453 6899999999999985 54444 543
No 57
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.60 E-value=7.4e-14 Score=131.23 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=55.0
Q ss_pred eecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 149 VIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
.++...+.+.|.+.+.+. |++++++++|+++.. + ++.+.+.+++|+++++|.||.|+|.++. +.+.+ +..
T Consensus 108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~-~~~ 178 (391)
T PRK08020 108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQR--D--DDGWELTLADGEEIQAKLVIGADGANSQ-VRQMA-GIG 178 (391)
T ss_pred EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--c--CCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHc-CCC
Confidence 455677888888887776 899999999999987 6 4567787778878999999999999985 44443 543
No 58
>PRK09126 hypothetical protein; Provisional
Probab=99.60 E-value=1.6e-13 Score=129.07 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
....+.+.+.+.+.+ .|++++++++|++++. + ++.+.|.+++|+++++|.||.|+|..+. +.+.+
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~ 173 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--D--DDGAQVTLANGRRLTARLLVAADSRFSA-TRRQL 173 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--c--CCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhc
Confidence 335566667666644 6899999999999988 6 3567777788888999999999998774 43443
No 59
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.59 E-value=5.3e-13 Score=130.15 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC--Cc--cEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG--EEFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
..+.+.|.+.+.+. |++++++++|++++. + .+++.++.. +| ++++||+||.|+|.+|. +.+.+ ++.
T Consensus 113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~-vR~~l-g~~ 183 (538)
T PRK06183 113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQ--D--DDGVTVTLTDADGQRETVRARYVVGCDGANSF-VRRTL-GVP 183 (538)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--c--CCeEEEEEEcCCCCEEEEEEEEEEecCCCchh-HHHHc-CCe
Confidence 45666777777664 899999999999998 6 345666543 56 37999999999999875 43433 543
No 60
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.59 E-value=1.8e-13 Score=128.10 Aligned_cols=214 Identities=11% Similarity=0.091 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEE
Q 015072 153 TKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVE 231 (413)
Q Consensus 153 ~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~ 231 (413)
..+...|.+.+.+ .|++++++++|++++. + ++.+.+++++|+++++|.||.|+|.+|. +.+.+ ++...-..+.
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~-gi~~~~~~~~ 183 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEF--S--AEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLA-GIGITAWDYR 183 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCCch-hHHhc-CCCceeccCC
Confidence 3455666666655 4699999999999988 6 4567788888888999999999999884 33333 5443333333
Q ss_pred EEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcC
Q 015072 232 TSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFA 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p 311 (413)
...+.+.+...... ....+..+...+ ...+ .|..+..+.+......... ...... ..+.+.+.+.+.||
T Consensus 184 ~~~~v~~~~~~~~~---~~~~~~~~~~~g-~~~~-~pl~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~~ 252 (384)
T PRK08849 184 QHCMLINVETEQPQ---QDITWQQFTPSG-PRSF-LPLCGNQGSLVWYDSPKRI--KQLSAM----NPEQLRSEILRHFP 252 (384)
T ss_pred CeEEEEEEEcCCCC---CCEEEEEeCCCC-CEEE-eEcCCCceEEEEECCHHHH--HHHHcC----CHHHHHHHHHHHhh
Confidence 33333332221110 000011111112 2111 3433222222222110000 000000 12334444555555
Q ss_pred CCCCCCCCceeeeeeee--------ccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc-CCCCccc
Q 015072 312 GRVDSSGPAATQLCMYS--------MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS-GEAQGVE 382 (413)
Q Consensus 312 ~~~~~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~-~~~~~~~ 382 (413)
..... ....+...++ +..++.-++| +-.+...-+.|+|+.+|..-|..|++.+.. +...+..
T Consensus 253 ~~~~~--~~~~~~~~~~l~~~~~~~~~~grv~LlG-------DAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~ 323 (384)
T PRK08849 253 AELGE--IKVLQHGSFPLTRRHAQQYVKNNCVLLG-------DAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDAS 323 (384)
T ss_pred hhhCc--EEeccceEeeccccccchhccCCEEEEE-------cccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHH
Confidence 32211 1111222222 2233444444 334445557899999999999999999863 2222334
Q ss_pred cccccccccC
Q 015072 383 LRHFRIARFK 392 (413)
Q Consensus 383 ~~~~~~~R~~ 392 (413)
++.|.-.|..
T Consensus 324 L~~Ye~~R~~ 333 (384)
T PRK08849 324 FARYERRRRP 333 (384)
T ss_pred HHHHHHHHhH
Confidence 6777666643
No 61
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.58 E-value=4.2e-15 Score=137.47 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=85.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcce-ecccCC-ccccchHHHHHHHHHHHHHhcCCe
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI-RATYPE-DYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
|||+|||||.+|+++|+.|+++|.+|+|+|+++..+......+++++. .+...+ ..+..-......+.......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~---- 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR---- 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH----
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc----
Confidence 799999999999999999999999999999998775332222333322 110111 00000000000000000000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
-..++...++++.|++...-+. .+.||. . -.+..+++.|.+.+++
T Consensus 77 ---------------f~~~d~~~ff~~~Gv~~~~~~~---gr~fP~---------------s--~~a~~Vv~~L~~~l~~ 121 (409)
T PF03486_consen 77 ---------------FSPEDLIAFFEELGVPTKIEED---GRVFPK---------------S--DKASSVVDALLEELKR 121 (409)
T ss_dssp ---------------S-HHHHHHHHHHTT--EEE-ST---TEEEET---------------T----HHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHhcCCeEEEcCC---CEECCC---------------C--CcHHHHHHHHHHHHHH
Confidence 0113455566666664322110 122222 1 1347889999999999
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.|++++++++|++|.. ++ ++.+.|+++++.++.||.||+|+|..+
T Consensus 122 ~gv~i~~~~~V~~i~~--~~-~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 122 LGVEIHFNTRVKSIEK--KE-DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HT-EEE-S--EEEEEE--ET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred cCCEEEeCCEeeeeee--cC-CceeEeeccCcccccCCEEEEecCCCC
Confidence 9999999999999998 62 245888886666799999999999765
No 62
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.58 E-value=1.3e-12 Score=122.74 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=60.0
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
..++...+.+.+.+.+.+.|++++ .++|+++.. ++ ++.+.|++++|++++|+.||.|+|.++ .+.....+...++
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~--~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~~~~~~~~~~~~ 154 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEA--DG-VALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRFPLNVGF 154 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEe--cC-CceeEEEeCCCCEEEeCEEEECCCCch-hcccccCCCCceE
Confidence 347788899999999988899886 668988877 52 256777788887799999999999987 2211111333445
Q ss_pred eEEEEEEEEE
Q 015072 228 QAVETSVCYW 237 (413)
Q Consensus 228 ~~~~~~~~~~ 237 (413)
....|..+.+
T Consensus 155 q~~~G~~~~~ 164 (388)
T TIGR01790 155 QVAYGVEARL 164 (388)
T ss_pred EEEEEEEEEE
Confidence 5555655444
No 63
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.57 E-value=1.3e-13 Score=127.86 Aligned_cols=192 Identities=20% Similarity=0.168 Sum_probs=107.5
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
+.++...+.+.+.+.+.+.| .++.++.|++|.. . +..+.+.+++|++++|+.||.|.|..+. . +.....
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~--~--~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~-----~~~~~~ 150 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEE--T--GDGVLVVLADGRTIRARVVVDARGPSSP-K-----ARPLGL 150 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEe--c--CceEEEEECCCCEEEeeEEEECCCcccc-c-----cccccc
Confidence 46788899999999888444 5566899999998 6 4467788889988999999999996543 1 222334
Q ss_pred eEEEEEEEEEEecCCCccccccCCCCceEE------e-cCCCeeEecCCCCCCCeEEEEe--CCCCcCCCCCCCCCCCcc
Q 015072 228 QAVETSVCYWRIKEGDEADYAVGGDFPSFA------S-YGDPHVYGTPSLEYPGLIKIAL--HRGYLCDPDRRPWGPGPL 298 (413)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~p~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 298 (413)
+...|..+..+.+.-.. ..+.+. . .+..++|+.|.-+ +...+.. ... .+. ...++.
T Consensus 151 Q~f~G~~v~~~~~~f~~-------~~~~lMD~r~~~~~~~~~F~Y~lP~~~--~~alvE~T~fs~---~~~---~~~~~~ 215 (374)
T PF05834_consen 151 QHFYGWEVETDEPVFDP-------DTATLMDFRVPQSADGPSFLYVLPFSE--DRALVEETSFSP---RPA---LPEEEL 215 (374)
T ss_pred ceeEEEEEeccCCCCCC-------CceEEEEecccCCCCCceEEEEEEcCC--CeEEEEEEEEcC---CCC---CCHHHH
Confidence 45555554443221011 112211 1 2335789988754 3333322 221 111 111114
Q ss_pred hHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCC-eEEecCCCCCCCCEEE---EeCC----CccccccchHHHHHHH
Q 015072 299 LDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKD-FVIDFLGGELGEDVVV---AGGF----SGHGFKMAPVVGRILA 370 (413)
Q Consensus 299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~-p~ig~~~~~~~~~~~~---~~G~----~~~G~~~a~~~a~~~a 370 (413)
.+.|.+++.+ -++.. .++.+.-.|..|++..+. +..+ ++++. ++|. +|.++..+.-.|+.+|
T Consensus 216 ~~~l~~~l~~--~g~~~-~~i~~~E~G~IPm~~~~~~~~~~-------~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia 285 (374)
T PF05834_consen 216 KARLRRYLER--LGIDD-YEILEEERGVIPMTTGGFPPRFG-------QRVIRIGTAGGMVKPSTGYSFARIQRQADAIA 285 (374)
T ss_pred HHHHHHHHHH--cCCCc-eeEEEeecceeecccCCCccccC-------CCeeeEEccccCCCCcccHHHHHHHHHHHHHH
Confidence 5556666655 23332 246677889999954322 2211 22222 2221 1334444555777788
Q ss_pred HHHHc
Q 015072 371 DLVLS 375 (413)
Q Consensus 371 ~~i~~ 375 (413)
+.+..
T Consensus 286 ~~l~~ 290 (374)
T PF05834_consen 286 DALAK 290 (374)
T ss_pred HHHhh
Confidence 88875
No 64
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.57 E-value=7.5e-13 Score=119.79 Aligned_cols=229 Identities=18% Similarity=0.171 Sum_probs=157.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC-CCCCCCCcceecccCCcccc-----------------
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR-GSSHGESRTIRATYPEDYYH----------------- 65 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~-~~s~~~~~~~~~~~~~~~~~----------------- 65 (413)
+++||++||||++|.++++.|++. .++|+|+||-+..+.- +..++++|..|....+..|.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 469999999999999999999996 6899999998766433 33456666666544332221
Q ss_pred chHHHHHHHHHHHHHhcCC----eeEeeeeeee--eCCCChHHHHHHHHHHHhCC--CCcccc-CHHHHHHhcCCccc--
Q 015072 66 PMVLESSLLWEQAQSEIGY----KVYFKAHQFD--MGPSENKSLRSVIASCRKNS--VPHQVL-DCRQVLQKYSGRIE-- 134 (413)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g--~~~~~l-~~~~~~~~~p~~~~-- 134 (413)
+-+..+.++|..+.+.--+ .++.+...+. +...+.+.++..++.++..- ..+++. +.+++.+..|..+.
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR 161 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR 161 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence 1123456677776655322 2344444443 34455666777777776542 234555 46777777775221
Q ss_pred -CCCCeEEEEecCCeeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC-----CccEEEeCeEEE
Q 015072 135 -IPENWVGVTTELGGVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS-----SGEEFWGKKCVV 207 (413)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----~g~~i~ad~vV~ 207 (413)
..+...+.+...+--+|-..+.+.|.+.+.+. |++++++++|++|.+ .+ ++.|.|.+. +..+++|+.|++
T Consensus 162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r--~~-dg~W~v~~~~~~~~~~~~v~a~FVfv 238 (488)
T PF06039_consen 162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR--NG-DGRWEVKVKDLKTGEKREVRAKFVFV 238 (488)
T ss_pred CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE--CC-CCCEEEEEEecCCCCeEEEECCEEEE
Confidence 23344566777777788889999999998887 999999999999999 63 255777642 233799999999
Q ss_pred cCCcChhhhhhhhcCC----CcceeEEEEEEEEEE
Q 015072 208 TAGAWVGKLVKKISGL----ELPIQAVETSVCYWR 238 (413)
Q Consensus 208 A~G~~~~~l~~~~~g~----~~p~~~~~~~~~~~~ 238 (413)
.+|+++-.|++.. |+ .....|+.|+.+.-.
T Consensus 239 GAGG~aL~LLqks-gi~e~~gyggfPVsG~fl~~~ 272 (488)
T PF06039_consen 239 GAGGGALPLLQKS-GIPEGKGYGGFPVSGQFLRCK 272 (488)
T ss_pred CCchHhHHHHHHc-CChhhcccCCCcccceEEecC
Confidence 9999999898876 54 344567777765544
No 65
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.57 E-value=1.5e-12 Score=127.36 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEE--EeCCcc-EEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072 153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE-EFWGKKCVVTAGAWVGKLVKKISGLELP 226 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~ad~vV~A~G~~~~~l~~~~~g~~~p 226 (413)
..+.+.|.+.+.+. +++++++++|++++. + .+.+.+ +..+++ ++++|+||.|+|.++. +.+.+ |+...
T Consensus 125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~l-g~~~~ 196 (547)
T PRK08132 125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQ--H--DDGVTLTVETPDGPYTLEADWVIACDGARSP-LREML-GLEFE 196 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--c--CCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHc-CCCCC
Confidence 35566777777665 699999999999988 6 334444 334554 6999999999999885 43433 55433
No 66
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.56 E-value=1.1e-12 Score=123.72 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072 151 KPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA 229 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~ 229 (413)
.-..+.+.|.+.+.+. |++++++++|+++.. + ...+.|.+++|++++||.||.|.|.++. +.+.+ +...+...
T Consensus 109 ~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~-~~~~~~~~ 182 (405)
T PRK08850 109 ENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--G--ESEAWLTLDNGQALTAKLVVGADGANSW-LRRQM-DIPLTHWD 182 (405)
T ss_pred EHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--e--CCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHc-CCCeeEEe
Confidence 3345666777777664 799999999999988 6 4567788888888999999999999874 43444 54444333
Q ss_pred EEEEEE
Q 015072 230 VETSVC 235 (413)
Q Consensus 230 ~~~~~~ 235 (413)
+....+
T Consensus 183 ~~~~~~ 188 (405)
T PRK08850 183 YGHSAL 188 (405)
T ss_pred eccEEE
Confidence 333333
No 67
>PRK07045 putative monooxygenase; Reviewed
Probab=99.56 E-value=1.4e-12 Score=122.39 Aligned_cols=63 Identities=19% Similarity=0.079 Sum_probs=49.0
Q ss_pred ecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.-..+.+.|.+.+.. .|++++++++|++++. ++++..+.|++++|+++.+|.||.|.|.++.
T Consensus 103 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 103 IPCEQLRRLLLAKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred ccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3345677777777654 5799999999999998 6332345677888888999999999999884
No 68
>PRK06996 hypothetical protein; Provisional
Probab=99.54 E-value=3.7e-13 Score=126.50 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=54.9
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
..++-..+.+.|.+.+.+.|++++.++++++++. + ..++.+...++ ++++||.||.|+|..++...+.+ +..
T Consensus 110 ~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~--~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~-~~~ 184 (398)
T PRK06996 110 YVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--D--ADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA-GDS 184 (398)
T ss_pred EEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--c--CCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc-CCC
Confidence 3456678889999999988999999999999987 6 45677776644 47999999999997433333443 443
Q ss_pred cc
Q 015072 225 LP 226 (413)
Q Consensus 225 ~p 226 (413)
.+
T Consensus 185 ~~ 186 (398)
T PRK06996 185 AR 186 (398)
T ss_pred ce
Confidence 33
No 69
>PLN02463 lycopene beta cyclase
Probab=99.54 E-value=1e-12 Score=123.51 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=52.1
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.++...+.+.+.+.+.+.|++++ .++|++|+. . ++.+.|++++|++++||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~--~--~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVH--E--ESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 346778888999999888899997 579999988 6 4567888888878999999999998764
No 70
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.53 E-value=2.2e-13 Score=126.46 Aligned_cols=72 Identities=25% Similarity=0.273 Sum_probs=49.8
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Ccc--EEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGE--EFWGKKCVVTAGAWVGKLVKKISGLE 224 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~ 224 (413)
.++...+.+.|.+.+++.|++++++++|+++.. +++...+.+... +|+ +++||.||.|.|.+|. +.+.+ +..
T Consensus 107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l-~~~ 181 (356)
T PF01494_consen 107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQL-GID 181 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHT-TGG
T ss_pred hhhHHHHHHhhhhhhhhhhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeecccCcccc-hhhhc-ccc
Confidence 345567888999999999999999999999988 632212233332 343 6999999999999984 44444 543
No 71
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.53 E-value=5.5e-12 Score=118.16 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=50.1
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC------Cc--cEEEeCeEEEcCCcChhhhhhhh
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS------SG--EEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g--~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
.++...+-+.|.+.+.+.|++++. +.|+++.. + ++.+.+... ++ .+++||.||.|+|.++. +.+.+
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~l 161 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLER--D--RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKEL 161 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEE--c--CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHc
Confidence 467788889999999889999975 56999987 6 345555433 22 36999999999999884 54544
Q ss_pred cCC
Q 015072 221 SGL 223 (413)
Q Consensus 221 ~g~ 223 (413)
+.
T Consensus 162 -g~ 163 (388)
T TIGR02023 162 -GL 163 (388)
T ss_pred -CC
Confidence 44
No 72
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.52 E-value=4.6e-12 Score=124.81 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=109.5
Q ss_pred ecHHHHHHHHHHHHHHcC--CeEecCceEEEEEeeeccC-CCcEEEEeC------Cc--cEEEeCeEEEcCCcChhhhhh
Q 015072 150 IKPTKAVSMFQTLAIKNG--AVLRDNTEVKTVLKVKDDV-RGGVTVVTS------SG--EEFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~-~~~~~v~~~------~g--~~i~ad~vV~A~G~~~~~l~~ 218 (413)
++-..+.+.|.+.+.+.+ ++++++++|++++. ++. ...+.++.. +| ++++||+||-|.|+.|. +.+
T Consensus 138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~ 214 (634)
T PRK08294 138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--DEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRK 214 (634)
T ss_pred eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE--CCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHH
Confidence 333567777888887766 47788999999987 632 234555542 35 47999999999999884 434
Q ss_pred hhcCCCcceeEEEEEEEEEEe--cCCCccccccCCCCceEEecCCCeeEecCCCCCCC-eEEEEeCCCCcCCCCCCCCCC
Q 015072 219 KISGLELPIQAVETSVCYWRI--KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPG-LIKIALHRGYLCDPDRRPWGP 295 (413)
Q Consensus 219 ~~~g~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 295 (413)
.+ |+..+-.........+.+ ....+ .. .....+.......+.++|... + ++.+..... ..++....+..
T Consensus 215 ~l-gi~~~G~~~~~~~~v~dv~~~~~~p-~~---~~~~~~~~~~~g~~~~~P~~~--g~~~r~~~~~~-~~~~~~~~~~~ 286 (634)
T PRK08294 215 AI-GRELRGDSANHAWGVMDVLAVTDFP-DI---RLKCAIQSASEGSILLIPREG--GYLVRLYVDLG-EVPPDERVAVR 286 (634)
T ss_pred hc-CCCccCCcccceEEEEEEEEccCCC-Cc---ceEEEEecCCCceEEEEECCC--CeEEEEEEecC-cCCCccccccc
Confidence 33 554432222222222221 11111 00 001111112234566667643 4 233322111 11111111111
Q ss_pred CcchHHHHHHHHhhcCC-CCCCCCCceeeeeeee--------cc----------CCCCeEEecCCCCCCCCEEEEeCCCc
Q 015072 296 GPLLDSLKELIQGRFAG-RVDSSGPAATQLCMYS--------MT----------PDKDFVIDFLGGELGEDVVVAGGFSG 356 (413)
Q Consensus 296 ~~~~~~l~~~~~~~~p~-~~~~~~~~~~~~g~~~--------~t----------~d~~p~ig~~~~~~~~~~~~~~G~~~ 356 (413)
....+++.+.+.+.++. ..+. ..+..|+ .+. +. .++..++| +-.+...-++|
T Consensus 287 ~~t~e~l~~~~~~~~~p~~~~~-~~v~w~s-~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaG-------DAAH~hsP~~G 357 (634)
T PRK08294 287 NTTVEEVIAKAQRILHPYTLDV-KEVAWWS-VYEVGQRLTDRFDDVPAEEAGTRLPRVFIAG-------DACHTHSAKAG 357 (634)
T ss_pred cCCHHHHHHHHHHhcCCCCCce-eEEeEEe-cccccceehhhcccccccccccccCCEEEEe-------cCccCCCCccc
Confidence 11567777788887643 2321 1222232 222 10 13344444 33333445677
Q ss_pred cccccchH----HHHHHHHHHHcCCCCcccccccccccc
Q 015072 357 HGFKMAPV----VGRILADLVLSGEAQGVELRHFRIARF 391 (413)
Q Consensus 357 ~G~~~a~~----~a~~~a~~i~~~~~~~~~~~~~~~~R~ 391 (413)
+|+.+|.- +|..|+..+. |...+..++.|.-.|.
T Consensus 358 QGmN~giqDA~nLawkLa~vl~-g~a~~~lL~tYe~ERr 395 (634)
T PRK08294 358 QGMNVSMQDGFNLGWKLAAVLS-GRSPPELLHTYSAERQ 395 (634)
T ss_pred cchhhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHH
Confidence 88888665 4555666554 5444455777766663
No 73
>PRK07588 hypothetical protein; Provisional
Probab=99.51 E-value=2.6e-12 Score=120.65 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
-..+.+.|.+.+ ..+++++++++|++++. + ++.+.+++++|+++++|.||.|.|.+|.
T Consensus 102 r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 102 RGDLAAAIYTAI-DGQVETIFDDSIATIDE--H--RDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHHHhh-hcCeEEEeCCEEeEEEE--C--CCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 355666666654 34799999999999988 6 4567888889988999999999999885
No 74
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.51 E-value=1.5e-11 Score=119.25 Aligned_cols=67 Identities=27% Similarity=0.256 Sum_probs=53.3
Q ss_pred EEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 141 GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
+.+.+.+|. ..+.+.|.+.+++.|++|+++++|++|.. ++ +..+.|++++|+++.||.||+|++...
T Consensus 210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIET--EG-GRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEe--eC-CEEEEEEECCCCEEECCEEEECCcHHH
Confidence 344444443 57888999999999999999999999998 63 245678888888899999999999743
No 75
>PRK11445 putative oxidoreductase; Provisional
Probab=99.51 E-value=8.9e-12 Score=114.96 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=48.5
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
.++...+.+.|.+. ...|+++++++.|+++.. + ++++.+.. .+|+ +++||.||.|+|..+. +.+.+
T Consensus 95 ~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~-vr~~l 163 (351)
T PRK11445 95 NIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWR--E--DDGYHVIFRADGWEQHITARYLVGADGANSM-VRRHL 163 (351)
T ss_pred cccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEE--c--CCEEEEEEecCCcEEEEEeCEEEECCCCCcH-HhHHh
Confidence 36667777777664 467899999999999988 6 34566653 4554 6899999999999874 43433
No 76
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.51 E-value=2.1e-11 Score=115.40 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=48.2
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCcEEEEeCC-------c--cEEEeCeEEEcCCcChhhhhh
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGGVTVVTSS-------G--EEFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~-------g--~~i~ad~vV~A~G~~~~~l~~ 218 (413)
.++...+-+.|.+.+.+.|++++.. .++++.. .+. ++.+.++..+ | .+++||.||.|+|..+ .+.+
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr 203 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDV--PKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAK 203 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEe--ccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHH
Confidence 4677888899999999999999854 6888765 321 2344454321 3 3799999999999987 4555
Q ss_pred hh
Q 015072 219 KI 220 (413)
Q Consensus 219 ~~ 220 (413)
.+
T Consensus 204 ~l 205 (450)
T PLN00093 204 DI 205 (450)
T ss_pred Hh
Confidence 54
No 77
>PRK05868 hypothetical protein; Validated
Probab=99.50 E-value=6.8e-12 Score=116.56 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
...+.+.+.+ +...|++++++++|++++. + .+.+.++.++|+++++|.||-|.|.+|. +.+.+
T Consensus 104 R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~dg~~~~adlvIgADG~~S~-vR~~~ 166 (372)
T PRK05868 104 RDDLVELLYG-ATQPSVEYLFDDSISTLQD--D--GDSVRVTFERAAAREFDLVIGADGLHSN-VRRLV 166 (372)
T ss_pred HHHHHHHHHH-hccCCcEEEeCCEEEEEEe--c--CCeEEEEECCCCeEEeCEEEECCCCCch-HHHHh
Confidence 3455555543 3346899999999999987 6 4678888888888999999999999884 43433
No 78
>PRK06753 hypothetical protein; Provisional
Probab=99.50 E-value=3.2e-12 Score=119.43 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=46.9
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.++-..+.+.|.+.+. +.+++++++|++++. + ++.+.+++++|+++++|.||.|.|.+|.
T Consensus 94 ~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 94 TLHRQTLIDIIKSYVK--EDAIFTGKEVTKIEN--E--TDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred cccHHHHHHHHHHhCC--CceEEECCEEEEEEe--c--CCcEEEEECCCCEEecCEEEECCCcchH
Confidence 3444566666665543 467899999999988 6 4668888888888999999999999884
No 79
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.50 E-value=6.2e-12 Score=117.17 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=50.8
Q ss_pred eeecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 148 GVIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+.-..+.+.|.+.+.+.+ ++++++++|+++.. + .+.+.+..+++ ++++|.||.|.|.+|.
T Consensus 99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--H--NDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--c--CCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 44566788888988887765 89999999999988 6 45677777776 6999999999999885
No 80
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.49 E-value=1.3e-12 Score=113.86 Aligned_cols=145 Identities=21% Similarity=0.165 Sum_probs=92.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||||++|+++|+.|++.|++|+|+|+....++..... +.+. . ...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g---g~~~---~-----~~~----------------- 75 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG---GMLF---N-----KIV----------------- 75 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC---cccc---c-----ccc-----------------
Confidence 46899999999999999999999999999999987664321110 1000 0 000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
. . ......+.+.++++... ......+++..+...|.+.+.+
T Consensus 76 ---------v----~---~~~~~~l~~~gv~~~~~-----------------------~~g~~~vd~~~l~~~L~~~A~~ 116 (257)
T PRK04176 76 ---------V----Q---EEADEILDEFGIRYKEV-----------------------EDGLYVADSVEAAAKLAAAAID 116 (257)
T ss_pred ---------c----h---HHHHHHHHHCCCCceee-----------------------cCcceeccHHHHHHHHHHHHHH
Confidence 0 0 01112223333321110 0011345778899999999999
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeC-----------CccEEEeCeEEEcCCcChhhhhhhh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-----------SGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----------~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
.|+++++++.|+++.. ++++....+... +..+++|+.||+|||+++. +.+.+
T Consensus 117 ~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~l 179 (257)
T PRK04176 117 AGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSVL 179 (257)
T ss_pred cCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHHH
Confidence 9999999999999987 532222222211 1236999999999999885 44443
No 81
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.48 E-value=6.8e-13 Score=127.35 Aligned_cols=187 Identities=18% Similarity=0.131 Sum_probs=100.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIG 83 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (413)
..++||||||+|++|+++|+.|+++|.+|+||||.+.....+++....+ +........ ..........+++++.+..+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 4568999999999999999999999999999999874211122222223 221111110 00000111234444443322
Q ss_pred CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.... ...+.... +...+..+++.+.|+++........ .+ ... ..+... ....++..|.+.+
T Consensus 81 ~~~~--~~~~~~~~---~~s~~~~~wl~~~Gv~~~~~~~~~~---~~-----~~~--~~~~~g----~g~~l~~~l~~~~ 141 (466)
T PRK08274 81 GRTD--EALARLLI---RESSDCRDWMRKHGVRFQPPLSGAL---HV-----ART--NAFFWG----GGKALVNALYRSA 141 (466)
T ss_pred CCCC--HHHHHHHH---HcCHHHHHHHHhCCceEeecCCCcc---cc-----CCC--CeeecC----CHHHHHHHHHHHH
Confidence 1000 00000000 0002334455566665433211100 00 000 001111 1467888898999
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCcc--EEEeCeEEEcCCcChh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~--~i~ad~vV~A~G~~~~ 214 (413)
++.|++++++++|++|.. +++ ..+.+.. .+++ .++++.||+|+|.+..
T Consensus 142 ~~~gv~i~~~t~v~~l~~--~~g-~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 142 ERLGVEIRYDAPVTALEL--DDG-RFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHCCCEEEcCCEEEEEEe--cCC-eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 999999999999999988 632 3333433 3332 6899999999998754
No 82
>PRK07538 hypothetical protein; Provisional
Probab=99.48 E-value=1.9e-11 Score=115.53 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=44.9
Q ss_pred eecHHHHHHHHHHHHHH-cC-CeEecCceEEEEEeeeccCCCcEEEEeCC---c--cEEEeCeEEEcCCcChh
Q 015072 149 VIKPTKAVSMFQTLAIK-NG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSS---G--EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~-~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~vV~A~G~~~~ 214 (413)
.++...+.+.|.+.+.+ .| ..++++++|+++.. ++ +++.+...+ | ++++||.||.|.|.+|.
T Consensus 98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--~~--~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--DA--DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cC--CceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 35667788888887755 36 46999999999987 62 333343322 2 37999999999999885
No 83
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.47 E-value=8.3e-13 Score=127.30 Aligned_cols=182 Identities=20% Similarity=0.205 Sum_probs=101.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
.++||||||+|.+|+++|+.+++.|.+|+||||.+..++... ...+.+....... ...........++.++.+...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~--~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~- 136 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM--KASSGMNASETKFQKAQGIADSNDKFYEETLKGGG- 136 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc--ccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcC-
Confidence 468999999999999999999999999999999987654321 1112221100000 000000001123333322110
Q ss_pred eeEeeeeeeeeCCCChHHH-------HHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS 157 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
. ..+.+.+ .+..+++...|+++..+. ..+. .. ....+.+..+......++.
T Consensus 137 ~-----------~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~------~~~g-~~----~~r~~~p~~g~~~g~~l~~ 194 (506)
T PRK06481 137 G-----------TNDKALLRYFVDNSASAIDWLDSMGIKLDNLT------ITGG-MS----EKRTHRPHDGSAVGGYLVD 194 (506)
T ss_pred C-----------CCCHHHHHHHHhccHHHHHHHHHcCceEeecc------cCCC-CC----CCceeccCCCCCChHHHHH
Confidence 0 0011111 223455555665543211 0011 00 0111223233334466888
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.|.+.+++.|++++++++|++|.. +++. .++.+...+++ ++.++.||+|+|.+..
T Consensus 195 ~L~~~~~~~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 195 GLLKNVQERKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHcCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 888999999999999999999987 6321 13444444443 6899999999998864
No 84
>PRK07233 hypothetical protein; Provisional
Probab=99.45 E-value=1e-10 Score=111.77 Aligned_cols=56 Identities=29% Similarity=0.246 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW 212 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~ 212 (413)
..+.+.|.+.+.+.|++|+++++|++|+. + ++.+.+...+++++.+|+||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~--~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVI--D--GGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEE--c--CCceEEEEeCCceEECCEEEECCCHH
Confidence 56888888888888999999999999998 6 34444444556679999999999864
No 85
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=2.8e-12 Score=122.85 Aligned_cols=65 Identities=32% Similarity=0.416 Sum_probs=53.7
Q ss_pred EEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072 141 GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA 211 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~ 211 (413)
+++.+.+|+ ..++++|.+.+++.|++|+++++|++|.. +++ .++.+.+.+|+.+++|.||.+...
T Consensus 215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v--~~g-~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILV--EGG-KGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEE--eCC-cceEEeccccceeccceeEecCch
Confidence 344554444 68899999999999999999999999999 743 467888888866999999999987
No 86
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.43 E-value=1.6e-10 Score=108.24 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=47.1
Q ss_pred eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEE--eCC-----c--cEEEeCeEEEcCCcChhhhhh
Q 015072 149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVV--TSS-----G--EEFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~--~~~-----g--~~i~ad~vV~A~G~~~~~l~~ 218 (413)
.++...+-+.|.+.+.+.|++++.. .+.++.. .. .++.+.|+ ..+ | .+++|+.||.|+|..+ .+.+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~ 164 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLING-LVTKLSL--PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAK 164 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEe--ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHH
Confidence 4666788888999999999999866 4777754 21 12334443 222 3 2699999999999988 4555
Q ss_pred hh
Q 015072 219 KI 220 (413)
Q Consensus 219 ~~ 220 (413)
.+
T Consensus 165 ~~ 166 (398)
T TIGR02028 165 EI 166 (398)
T ss_pred Hh
Confidence 55
No 87
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.43 E-value=4e-11 Score=114.04 Aligned_cols=86 Identities=9% Similarity=0.085 Sum_probs=60.7
Q ss_pred eecHHHHHHHHHHHHHHcC---CeEecCceEEEEEeeec----c-CCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 149 VIKPTKAVSMFQTLAIKNG---AVLRDNTEVKTVLKVKD----D-VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~g---v~i~~~~~V~~i~~~~~----~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
.++-..+.+.|.+.+.+.+ ++++++++|++++. . + +...++|++.+|++++||.||.|.|.+|. + ++.
T Consensus 113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~--~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-v-R~~ 188 (437)
T TIGR01989 113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTI--PSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-V-RKA 188 (437)
T ss_pred EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEe--ccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-h-HHH
Confidence 4455677788888877764 89999999999975 3 1 12567888888889999999999999884 4 333
Q ss_pred cCCCcceeEEEEEEEEEE
Q 015072 221 SGLELPIQAVETSVCYWR 238 (413)
Q Consensus 221 ~g~~~p~~~~~~~~~~~~ 238 (413)
.++...-..+.+..+...
T Consensus 189 ~gi~~~g~~y~q~~~v~~ 206 (437)
T TIGR01989 189 ANIDTTGWNYNQHAVVAT 206 (437)
T ss_pred cCCCccceeeccEEEEEE
Confidence 366555444444444333
No 88
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.42 E-value=1.4e-10 Score=108.92 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
..+.+.|.+.+.+.|++++++++|++++. .++ ..+.|+. .+|+ ++++|.||.|.|..|.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~--~~~-~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHD--FDS-DRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEe--cCC-CceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 45667777777778999999999999875 322 3344444 3554 6899999999999884
No 89
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.41 E-value=3.1e-11 Score=113.60 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=47.6
Q ss_pred ecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEe---CCccEEEeCeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~vV~A~G~~~~ 214 (413)
++-..+.+.|.+.+.+. +++++++++|+++.. + .+.+.++. .+++++.+|.||-|.|.+|.
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--~--~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--T--GNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--C--CCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 45578888888887664 799999999999988 6 34555543 34457999999999999884
No 90
>PRK07121 hypothetical protein; Validated
Probab=99.39 E-value=5.1e-12 Score=121.90 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEe-CeEEEcCCcChh
Q 015072 151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~vV~A~G~~~~ 214 (413)
....+++.|.+.+++.|++++++++|++|.. ++++..+.|.. .+++ .+++ +.||+|||.++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 3567888899999999999999999999988 63223333332 2232 5889 999999998864
No 91
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.39 E-value=2.6e-11 Score=105.44 Aligned_cols=140 Identities=24% Similarity=0.244 Sum_probs=87.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||||++|+++|+.|+++|++|+|+||....++.. ++ .+... . .+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~--~~-gg~~~---~-----~~------------------ 70 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS--WG-GGMLF---S-----KI------------------ 70 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc--cC-CCcce---e-----cc------------------
Confidence 46999999999999999999999999999999998765321 11 11100 0 00
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.. .. ...+.++..++++... .. +. ...+...+.+.|.+.+.+
T Consensus 71 --------~~-~~------~~~~~l~~~gi~~~~~---------------~~---g~-----~~~~~~el~~~L~~~a~e 112 (254)
T TIGR00292 71 --------VV-EK------PAHEILDEFGIRYEDE---------------GD---GY-----VVADSAEFISTLASKALQ 112 (254)
T ss_pred --------cc-cc------hHHHHHHHCCCCeeec---------------cC---ce-----EEeeHHHHHHHHHHHHHH
Confidence 00 00 0111122233321100 00 00 123557888889999999
Q ss_pred cCCeEecCceEEEEEeeeccCC-CcEEEEeC-----------CccEEEeCeEEEcCCcChh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVR-GGVTVVTS-----------SGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~-----------~g~~i~ad~vV~A~G~~~~ 214 (413)
.|++++.++.|+++.. +++. ....|.+. +..+++|+.||.|||..+.
T Consensus 113 ~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 113 AGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred cCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 9999999999999988 6331 22333322 1236999999999998763
No 92
>PLN02985 squalene monooxygenase
Probab=99.38 E-value=8.4e-11 Score=113.08 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=47.0
Q ss_pred eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
..++..++.+.|.+.+.+. |++++. ..|+++.. +++. .++.+.+.+|+ ++.||.||.|+|.+|. +.+.+
T Consensus 142 ~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~--~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l 214 (514)
T PLN02985 142 RSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIE--EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSL 214 (514)
T ss_pred eeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEE--cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHh
Confidence 3455678888898888765 688885 46777766 5221 13444455665 4678999999999885 44444
No 93
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.38 E-value=7.1e-12 Score=121.02 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=56.9
Q ss_pred EEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 140 VGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+++.+.++. ..+++.|.+.+++.|++|+++++|++|.. ++ +..+.|++.+|+++.+|.||+|+|.|..
T Consensus 219 ~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~--~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 219 GGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIIL--EN-GKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred ceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEe--cC-CcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 3556666665 57889999999999999999999999988 63 3566788888888999999999998754
No 94
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.38 E-value=4.4e-12 Score=120.24 Aligned_cols=194 Identities=22% Similarity=0.241 Sum_probs=97.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCCeeE
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGYKVY 87 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (413)
||||||+|++|+++|+.|+++|.+|+||||....++ ++....+.+........ ...........+.++.+......
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg--~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~- 77 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG--SSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLN- 77 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS--GGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc--ccccccCceeeecccccccccccccccccceeeeccccccc-
Confidence 899999999999999999999999999999988654 33223333322221110 00011112233334433321110
Q ss_pred eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEE-ecC---CeeecHHHHHHHHHHH
Q 015072 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVT-TEL---GGVIKPTKAVSMFQTL 162 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~ 162 (413)
....+.. -.+...+..+++.+.++++..-..... ...++. . ...+.... ... ........+...|.+.
T Consensus 78 -~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 150 (417)
T PF00890_consen 78 -DPDLVRA---FVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGG-H--SPRWRSPPGNPDPPFGGLGGGKALIEALAKA 150 (417)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETT-E--SSTEEEEESSTTSSSHCCCHHHHHHHHHHHH
T ss_pred -ccchhhh---hhhcccceehhhhhhcccccccccccccccccCC-c--cccceeeeccccccccccccHHHHHHHHHHH
Confidence 0000000 011223445566666665433100000 000000 0 00101111 111 1122346788999999
Q ss_pred HHHcCCeEecCceEEEEEeeeccCC-CcEEEE-eCCcc--EEEeCeEEEcCCcChh
Q 015072 163 AIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVV-TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~-~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+++.|++|+++++|++|.. +++. .++.+. ..+|+ +++|+.||+|||.+..
T Consensus 151 ~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 9999999999999999999 7431 223334 23555 6889999999999986
No 95
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.38 E-value=6.3e-11 Score=109.57 Aligned_cols=190 Identities=15% Similarity=0.079 Sum_probs=97.0
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI 227 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~ 227 (413)
+.++..++.+.+.+.+.. + ++.+++|+++.. + .+.+ .+|++++|+.||.|.|..+..... .-.
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~~--~----~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------~~~ 146 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGLDA--D----GVDL--APGTRINARSVIDCRGFKPSAHLK------GGF 146 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEEeC--C----EEEE--CCCCEEEeeEEEECCCCCCCcccc------cee
Confidence 455567777777655432 3 666889998844 3 3444 677789999999999987542211 233
Q ss_pred eEEEEEEEEEEecCCCccccccCCCCceEE------ecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHH
Q 015072 228 QAVETSVCYWRIKEGDEADYAVGGDFPSFA------SYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS 301 (413)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
+...|..+... .+.. . ..+.+. ..+..++|..|..+ +.+.+..+. ....+.. ..++..+.
T Consensus 147 Q~f~G~~~r~~--~p~~--~----~~~~lMD~~~~q~~g~~F~Y~lP~~~--~~~lvE~T~-~s~~~~l---~~~~l~~~ 212 (370)
T TIGR01789 147 QVFLGREMRLQ--EPHG--L----ENPIIMDATVDQLAGYRFVYVLPLGS--HDLLIEDTY-YADDPLL---DRNALSQR 212 (370)
T ss_pred eEEEEEEEEEc--CCCC--C----CccEEEeeeccCCCCceEEEECcCCC--CeEEEEEEe-ccCCCCC---CHHHHHHH
Confidence 44455554443 2111 1 112221 22335688888754 434443211 0110111 11114455
Q ss_pred HHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEE-------EeCCCccccccchHHHHHHHHHHH
Q 015072 302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVV-------AGGFSGHGFKMAPVVGRILADLVL 374 (413)
Q Consensus 302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~-------~~G~~~~G~~~a~~~a~~~a~~i~ 374 (413)
|.+++.+. .... .+++....|+.|++-++.+.--... . +++.. ..-..|.|+..+...+..|++.+.
T Consensus 213 l~~~~~~~--g~~~-~~i~~~e~g~iPm~~~~~~~~~~~~-~--~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~ 286 (370)
T TIGR01789 213 IDQYARAN--GWQN-GTPVRHEQGVLPVLLGGDFSAYQDE-V--RIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD 286 (370)
T ss_pred HHHHHHHh--CCCc-eEEEEeeeeEEeeecCCCccccccc-C--CceeeeecccccccccccccHHHHHHHHHHHHhccC
Confidence 55555444 2221 1355556688888654311100000 0 22221 122346788888888888887774
No 96
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.38 E-value=3.4e-10 Score=109.58 Aligned_cols=46 Identities=39% Similarity=0.452 Sum_probs=41.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
.||+|||||++|+++|..|+++|++|+|+|+.+..||+..+....|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G 47 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRG 47 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCC
Confidence 6899999999999999999999999999999999988877654433
No 97
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.5e-11 Score=98.32 Aligned_cols=139 Identities=23% Similarity=0.171 Sum_probs=88.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
+.||+|||||++||++||+|+++|.||+|+|+....||....+ |.+.+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G---Gmlf~~i--------------------------- 79 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG---GMLFNKI--------------------------- 79 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc---cccccee---------------------------
Confidence 5799999999999999999999999999999987775432221 1111100
Q ss_pred EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN 166 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (413)
.+ . +.....++..+++.+... .+ -.+.|+..++..|...+.+.
T Consensus 80 -------Vv-~------~~a~~iL~e~gI~ye~~e------------------~g-----~~v~ds~e~~skl~~~a~~a 122 (262)
T COG1635 80 -------VV-R------EEADEILDEFGIRYEEEE------------------DG-----YYVADSAEFASKLAARALDA 122 (262)
T ss_pred -------ee-c------chHHHHHHHhCCcceecC------------------Cc-----eEEecHHHHHHHHHHHHHhc
Confidence 00 0 011112222333211111 01 13456788888888889999
Q ss_pred CCeEecCceEEEEEeeeccCCCcEEEEe------CCc-----cEEEeCeEEEcCCcChh
Q 015072 167 GAVLRDNTEVKTVLKVKDDVRGGVTVVT------SSG-----EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~vV~A~G~~~~ 214 (413)
|++|+..+.|+++.. .++.....+.. ..+ -.++++.||-|||.-+.
T Consensus 123 Gaki~n~~~veDvi~--r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~ 179 (262)
T COG1635 123 GAKIFNGVSVEDVIV--RDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE 179 (262)
T ss_pred CceeeecceEEEEEE--ecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence 999999999999988 53322222211 111 16899999999998764
No 98
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=4e-11 Score=116.83 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=99.8
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS 80 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (413)
|+....++||+|||+|.+|+++|..+ +.|.+|+||||.....+ +++....+.+........ .-...+.++.+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~g-G~s~~a~gg~~~~~~~~d------~~~~~~~d~~~ 72 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKS-GCTVMAEGGYNAVLNPED------SFEKHFEDTMK 72 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCC-ccccccCceEEEeCCCCC------CHHHHHHHHHH
Confidence 55455679999999999999999999 88999999999865322 222222222221111110 00112222221
Q ss_pred hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
...... ....+ ..-.+...+.++++...|+++..-....+.. .+.. ...+ ...+ ..+ .....++..|
T Consensus 73 ~~~~~~--d~~lv---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g-~~~~---r~~~-~~~--~~G~~i~~~L 140 (543)
T PRK06263 73 GGAYLN--DPKLV---EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGG-QSFN---RTCY-AGD--RTGHEMMMGL 140 (543)
T ss_pred HhcCCC--CHHHH---HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCC-eEcC---eEEE-CCC--CCHHHHHHHH
Confidence 110000 00000 0000111233455566676543211100000 0011 0000 0011 111 1235678888
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.+++.|+++++++.|+++.. +++...+.+. . .+++ .+.|+.||+|||++..
T Consensus 141 ~~~~~~~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 141 MEYLIKERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHhcCCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 8888888999999999999987 6332133332 2 4554 6899999999999764
No 99
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.35 E-value=3.8e-10 Score=108.30 Aligned_cols=43 Identities=40% Similarity=0.549 Sum_probs=38.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~ 51 (413)
+|+|||||++|+++|+.|+++| ++|+|+|+.+..||+..+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~ 46 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK 46 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence 5999999999999999999987 899999999999887766443
No 100
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.35 E-value=9.4e-12 Score=118.63 Aligned_cols=180 Identities=21% Similarity=0.226 Sum_probs=96.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCCee
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
||||||+|++|+++|+.++++| .+|+||||.+..++. +....+.+........ ..........+++.+.+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~--s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 76 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN--SAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRG-- 76 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc--ccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCC--
Confidence 8999999999999999999999 999999999876532 2222232221111000 000000011122222211000
Q ss_pred EeeeeeeeeCCCChHHH-------HHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 87 YFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
..+.+.+ .+..+++. .++.++... . ..... ......+.+..+......+++.|
T Consensus 77 ----------~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~---~-~~~~~-----~~~~~~~~~~~g~~~g~~l~~~l 136 (439)
T TIGR01813 77 ----------INDPELVRILAEESADAVDWLQ-DGVGARLDD---L-IQLGG-----HSVPRAHRPTGGAGSGAEIVQKL 136 (439)
T ss_pred ----------CCCHHHHHHHHhccHHHHHHHH-hCCCeeecc---c-cccCC-----cCCCccccCCCCCCCHHHHHHHH
Confidence 0011111 11222333 222221110 0 00000 00001112223344567889999
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.+++.|++++++++|++|.. ++++. ++.+.+.+++ .+.++.||+|+|.++.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 9999999999999999999998 63222 3344444554 4789999999999876
No 101
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.34 E-value=4.3e-10 Score=106.45 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=47.3
Q ss_pred ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
++...+.+.|.+.+. +..++++++|++|.. + ++.+.+.+++|+++++|.||.|+|.+|.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEE--Q--AEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEe--c--CCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 556677777776653 356788999999988 6 4568888888888999999999999985
No 102
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.34 E-value=1.9e-11 Score=114.41 Aligned_cols=179 Identities=19% Similarity=0.202 Sum_probs=101.1
Q ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEeee
Q 015072 11 IVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKA 90 (413)
Q Consensus 11 vIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (413)
+|||||++|+++|+.|+++|++|+|+|+.+..++.....+++.+...... .... ++. ..+.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~--~~~~-------~~~----~~~~~~~~~~ 67 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSC--PTPE-------FVA----YYPRNGKFLR 67 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCC--cchh-------HHH----hcCCCcHHHH
Confidence 69999999999999999999999999998876543322222222111000 0000 000 0000000000
Q ss_pred eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeE
Q 015072 91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVL 170 (413)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i 170 (413)
..+ ... ...+...++...|+++...... +.+|. ......+.+.+.+.+++.|+++
T Consensus 68 ~~l--~~~---~~~d~~~~~~~~Gv~~~~~~~g---~~~p~-----------------~~~a~~v~~~L~~~l~~~gv~i 122 (400)
T TIGR00275 68 SAL--SRF---SNKDLIDFFESLGLELKVEEDG---RVFPC-----------------SDSAADVLDALLNELKELGVEI 122 (400)
T ss_pred HHH--HhC---CHHHHHHHHHHcCCeeEEecCC---EeECC-----------------CCCHHHHHHHHHHHHHHCCCEE
Confidence 000 000 0123334445555543322100 01111 0123678888999999999999
Q ss_pred ecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh----------hhhhhhhcCCC-cceeEEEEE
Q 015072 171 RDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV----------GKLVKKISGLE-LPIQAVETS 233 (413)
Q Consensus 171 ~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~----------~~l~~~~~g~~-~p~~~~~~~ 233 (413)
+++++|+++.. + ++.+.++++ ++++.+|.||+|+|.++ -.++..+ |.. .|..|....
T Consensus 123 ~~~~~V~~i~~--~--~~~~~v~~~-~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~l-G~~i~~~~P~l~~ 190 (400)
T TIGR00275 123 LTNSKVKSIKK--D--DNGFGVETS-GGEYEADKVILATGGLSYPQLGSTGDGYEIAESL-GHTIVPPVPALVP 190 (400)
T ss_pred EeCCEEEEEEe--c--CCeEEEEEC-CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHC-CCCEecccceEeE
Confidence 99999999987 6 345677764 44699999999999865 2455555 543 345554433
No 103
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.34 E-value=6.8e-10 Score=103.99 Aligned_cols=59 Identities=10% Similarity=-0.092 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Ccc--EEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~vV~A~G~~~~ 214 (413)
..+.+.|.+.+.+.|+.++++.+++.+.. .+ ...+.|+.. +|+ ++++|.||-|.|.+|.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~--~~-~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHD--LA-GDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEe--cC-CCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 45667777777778889988888877754 32 233444443 564 6899999999999885
No 104
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.34 E-value=1.5e-09 Score=103.91 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=37.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~ 49 (413)
+|+|||||++|+++|++|+++|++|+|+|+.+..||...+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~ 41 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSW 41 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeee
Confidence 48999999999999999999999999999999888766553
No 105
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.34 E-value=1.2e-11 Score=105.11 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
...+.+++.+.+++.+++++++++|+++.. + ++.|.|++.+++++.|++||+|+|.++.+..+.+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~--~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRR--D--GDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEE--E--TTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEE--e--ccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 356777888888888999999999999999 7 4569999999977999999999998766544444
No 106
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.34 E-value=5.4e-11 Score=97.17 Aligned_cols=140 Identities=25% Similarity=0.222 Sum_probs=79.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||||++|+++|++|++.|+||+|+|++...|+.....+ .+.+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg---~lf~~--------------------------- 65 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG---MLFNK--------------------------- 65 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C---TT------------------------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc---cccch---------------------------
Confidence 468999999999999999999999999999999877654322221 11000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
+.+.. .. .. .+...+++++ +...++ .+.|+..+...|...+.+
T Consensus 66 -------iVVq~-~a---~~---iL~elgi~y~------------------~~~~g~-----~v~d~~~~~s~L~s~a~~ 108 (230)
T PF01946_consen 66 -------IVVQE-EA---DE---ILDELGIPYE------------------EYGDGY-----YVADSVEFTSTLASKAID 108 (230)
T ss_dssp -------EEEET-TT---HH---HHHHHT---E------------------E-SSEE-----EES-HHHHHHHHHHHHHT
T ss_pred -------hhhhh-hH---HH---HHHhCCceeE------------------EeCCeE-----EEEcHHHHHHHHHHHHhc
Confidence 00000 00 01 1111222111 000111 335778888888888888
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEe------CCc-----cEEEeCeEEEcCCcChh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVT------SSG-----EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~vV~A~G~~~~ 214 (413)
.|++++..+.|+++.. .+++....+.. ..| -.++++.||-|||.-+.
T Consensus 109 aGakifn~~~vEDvi~--r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 109 AGAKIFNLTSVEDVIV--REDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp TTEEEEETEEEEEEEE--ECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred CCCEEEeeeeeeeeEE--EcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 9999999999999988 53222222221 122 16999999999998654
No 107
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.33 E-value=3.6e-10 Score=110.09 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=45.0
Q ss_pred eecHHHHHHHHHHHHHHcCC-eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 149 VIKPTKAVSMFQTLAIKNGA-VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~gv-~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.-..+.+.|.+.+ +. .++++++|++++. + ++.+.+.+++|+++.+|.||.|.|.++.
T Consensus 190 ~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~--~--~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 190 VISRMTLQQILARAV---GEDVIRNESNVVDFED--S--GDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEE--e--CCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 445566666665443 33 3677889999988 6 4678888888888999999999999995
No 108
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.33 E-value=6.4e-11 Score=116.47 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=101.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (413)
.++||+|||+|.+|+++|+.+++.|.+|+||||....++ ++....|.+........ .++. ..+.+..+....
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g--~t~~a~Ggi~a~~~~~~-----~Ds~e~~~~D~~~~g~~ 100 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS--HTVAAQGGINAALGNMT-----EDDWRWHAYDTVKGSDW 100 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC--CchhhcCCeeEEecCCC-----CCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999877543 22222333322111000 0011 111122111000
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCC-----CCeEEEEecCCeeecHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIP-----ENWVGVTTELGGVIKPTKAVSM 158 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
. .....+. .-.+...+.++++.++|+++.......+.. .+.. .... ......+. .+ -....+++.
T Consensus 101 -~-~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~~r~~~~-~d--~tG~~i~~~ 171 (617)
T PTZ00139 101 -L-GDQDAIQ---YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGG-QSLKFGKGGQAYRCAAA-AD--RTGHAMLHT 171 (617)
T ss_pred -C-CCHHHHH---HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCc-ccccccCCCccceeeec-CC--CcHHHHHHH
Confidence 0 0000000 000112344566667777664322111100 1111 0000 00000111 00 023578889
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
|.+.+++.|++++.++.++++.. ++++....+ ...+|+ .+.|+.||+|||++..
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIM--DEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEE--CCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 99989889999999999999886 422333333 224565 6889999999999865
No 109
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.32 E-value=4.3e-11 Score=113.09 Aligned_cols=184 Identities=13% Similarity=0.133 Sum_probs=94.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||+|.+|+++|..++ .|.+|+||||....++ .+....+.+....... ....++++..+.....
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg--~s~~a~ggi~~~~~~d-------~~~~~~~d~~~~g~~~ 72 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC--NTYLAQGGISVARNKD-------DITSFVEDTLKAGQYE 72 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC--chHHHhHhheeCCCCC-------CHHHHHHHHHHHhCCC
Confidence 5699999999999999999985 6999999999877643 2222222222111111 1112222222211000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
. ....+.. -.+...+..+++...|+++..-.........+. ......+.+.+ .....+++.|.+.+.+
T Consensus 73 ~--d~~lv~~---~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~-----~~~~r~~~~~~--~~g~~l~~~L~~~~~~ 140 (433)
T PRK06175 73 N--NLEAVKI---LANESIENINKLIDMGLNFDKDEKELSYTKEGA-----HSVNRIVHFKD--NTGKKVEKILLKKVKK 140 (433)
T ss_pred C--CHHHHHH---HHHHHHHHHHHHHHcCCccccCCCceeeeccCc-----cccCeEEecCC--CChHHHHHHHHHHHHh
Confidence 0 0000000 001113344555666665432110000000000 00001111111 1235678888877765
Q ss_pred -cCCeEecCceEEEEEeeeccCCCcEEEE-eCCcc--EEEeCeEEEcCCcChh
Q 015072 166 -NGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.|++|+++++|++|.. +++ ..+.+. ..+++ .+.|+.||+|||.+..
T Consensus 141 ~~gV~i~~~t~v~~Li~--~~~-~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 141 RKNITIIENCYLVDIIE--NDN-TCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred cCCCEEEECcEeeeeEe--cCC-EEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4899999999999987 632 333322 22333 5899999999998763
No 110
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=1.5e-10 Score=113.57 Aligned_cols=192 Identities=15% Similarity=0.130 Sum_probs=100.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (413)
.++||+|||+|.+|+++|+.+++.|.+|+||||....++ ++....|.+....... . .++.+ .+.+..+...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g--~s~~a~Ggi~a~~~~~--~---~Ds~e~~~~d~~~~g~- 82 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS--HTVAAQGGISASLGNM--G---EDDWRWHMYDTVKGSD- 82 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc--chhhhcCCcccccCCC--C---CCCHHHHHHHHHHhcc-
Confidence 468999999999999999999999999999999876543 2222222222111100 0 00000 1111111100
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC-----CCeEEEEecCCeeecHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP-----ENWVGVTTELGGVIKPTKAVSM 158 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.. .....+.. -.+...+.++++..+|+++......... ..++. .... ......+. .+ -....++..
T Consensus 83 ~~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~~~~~~~~~~~~R~~~~-~d--~tG~~i~~~ 154 (598)
T PRK09078 83 WL-GDQDAIEY---MCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGG-MTTNYGKGPPAQRTCAA-AD--RTGHAILHT 154 (598)
T ss_pred CC-CCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCceeecccCc-eecccCCCCccceeEec-CC--CCHHHHHHH
Confidence 00 00000000 0011133445566677765432111110 01111 0000 00001111 11 123568888
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChhh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~ 215 (413)
|.+.+.+.|+++++++.|++|.. ++++..+.|. ..+|+ .+.|+.||+|||.+...
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIM--DDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 88888889999999999999988 6322233332 34565 68999999999998764
No 111
>PLN02612 phytoene desaturase
Probab=99.31 E-value=3.6e-09 Score=103.39 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
..++..|.+.+++.|++|+++++|++|.. ++++..+.+.+.+|+++.+|+||+|+....
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVVEGDVYVSATPVDI 366 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEEECCEEEECCCHHH
Confidence 56788888888889999999999999998 643334557777888899999999997643
No 112
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.31 E-value=1.4e-11 Score=121.05 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=96.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (413)
.++||+|||+|.+|+++|..+++. |.+|+||||....++...+.+.. .+........ .-...++.+.+...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~-~~~~~~~~~d------s~e~~~~d~~~~~~ 82 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLS-AINAYIGEGE------TPEDYVRYVRKDLM 82 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCcc-ccccccccCC------CHHHHHHHHHHhcc
Confidence 358999999999999999999998 99999999987643221111110 1111111100 00112222221110
Q ss_pred CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.. .....+.. -.+...+.++++...|+++....... .++. .. .....++..+.+.|.+.+
T Consensus 83 -~~-~d~~lv~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~---~~~~------g~------~~~~~~G~~~~~~L~~~a 142 (608)
T PRK06854 83 -GI-VREDLVYD---IARHVDSVVHLFEEWGLPIWKDENGK---YVRR------GR------WQIMINGESYKPIVAEAA 142 (608)
T ss_pred -CC-CCHHHHHH---HHHhHHHHHHHHHHcCCeeeecCCCC---cccc------CC------ccCCCChHHHHHHHHHHH
Confidence 00 00000000 00111344555666676543211000 0000 00 000134567788888888
Q ss_pred HHcC-CeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 164 IKNG-AVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
++.+ ++++.++.|+++.. +++ ..+.+ ...+++ .+.|+.||+|||+++.
T Consensus 143 ~~~ggV~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 143 KKALGDNVLNRVFITDLLV--DDN-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HhcCCCEEEeCCEEEEEEE--eCC-EEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 7775 99999999999987 532 22222 234554 6899999999999875
No 113
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.31 E-value=8.6e-11 Score=114.18 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||+|++|+++|..+++.|.+|+||||....++ ++....|.+........ .-...+.++.+..+..
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~d------s~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGD------SPEAHVADTLVAGAGL 86 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCC------CHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999999987643 33322233322111110 0011222222211100
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
. ....+.. -.+...+.++++...|+++..-....+. ..+.. . ........ .+-.....+.+.|.+.++
T Consensus 87 ~--d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-~----~~~r~~~~-~~d~~G~~i~~~L~~~~~ 155 (541)
T PRK07804 87 C--DPDAVRS---LVAEGPRAVRELVALGARFDESPDGRWALTREGG-H----SRRRIVHA-GGDATGAEVQRALDAAVR 155 (541)
T ss_pred C--CHHHHHH---HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCC-e----ecCeeEec-CCCCCHHHHHHHHHHHHH
Confidence 0 0000000 0001123345556667654321111000 00000 0 00001111 011134678888989888
Q ss_pred HcCCeEecCceEEEEEeeeccCCC--cEEEE-----eCCc-cEEEeCeEEEcCCcChh
Q 015072 165 KNGAVLRDNTEVKTVLKVKDDVRG--GVTVV-----TSSG-EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~-----~~~g-~~i~ad~vV~A~G~~~~ 214 (413)
+.|++++.++.|+++.. ++++. ++.+. ..++ ..+.|+.||+|||.++.
T Consensus 156 ~~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 156 ADPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred hCCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 88999999999999987 63222 23333 2333 26899999999999874
No 114
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.31 E-value=3.3e-11 Score=115.27 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=50.2
Q ss_pred eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.+|...+.+.+.+.+.+. |++++ ++.|+++.. ++ +....|.+.+|..+.|+.||+|||.|.+
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~--e~-grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV--EN-GRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 4678888999998888765 78886 678999887 52 2445677888888999999999998763
No 115
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=1.1e-10 Score=114.00 Aligned_cols=188 Identities=12% Similarity=0.067 Sum_probs=98.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (413)
.++||+|||+|.+|+++|..+++.|.+|+||||....++ .+....|.+....... ... ..+.+ .+.+..+. +.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~--~~~-~Ds~e~~~~d~~~~-g~ 77 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS--HSAAAEGGIAAYIPGN--SDP-NDNPDYMTYDTVKG-GD 77 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC--cchhhccchhhhcccc--CCC-cccHHHHHHHHHHh-hc
Confidence 468999999999999999999999999999999876543 2222222222111000 000 01111 11111111 10
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.. .....+ ..-.+...+.++++..+|+++..-....+ ...++. .. .....+.. + -....+++.|.+.+
T Consensus 78 ~~-~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~---~~r~~~~~-~--~~G~~i~~~L~~~~ 146 (566)
T PRK06452 78 YL-VDQDAA---ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG-QT---YPRTRFVG-D--KTGMALLHTLFERT 146 (566)
T ss_pred cC-CCHHHH---HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcC-cc---CCeeEecC-C--CCHHHHHHHHHHHH
Confidence 00 000000 00001113445566667776533211110 011111 00 00111111 0 12356778888888
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcCh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWV 213 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~ 213 (413)
.+.|+++++++.++++.. +++ ..+.+. . .+++ .+.|+.||+|||++.
T Consensus 147 ~~~gv~i~~~~~~~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVT--DNK-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 888999999999999998 632 333333 3 2343 688999999999876
No 116
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.30 E-value=1.6e-09 Score=104.34 Aligned_cols=46 Identities=30% Similarity=0.374 Sum_probs=40.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCCCCc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
.||+|||||++|+++|++|+++ |++|+|+|+.+..||+..+....|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g 52 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDG 52 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCC
Confidence 6899999999999999999999 999999999999988877654444
No 117
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=1.1e-10 Score=112.40 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=98.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
++||+|||+|++|+++|+.+++.|. |+||||.+..++ ++....|.+......... -...+.++.+.....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds------~e~~~~d~~~~~~~~- 71 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDS------IDSHVEDTLAAGAGI- 71 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCC------HHHHHHHHHHhcCCc-
Confidence 5899999999999999999999997 999999976543 332222333222111110 011222222211000
Q ss_pred EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.....+.. -.+...+.++++...|+++.......... .+.. ......+.. +......+.+.|.+.+++
T Consensus 72 -~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-----~~~~r~~~~--~~~~G~~l~~~L~~~~~~ 140 (488)
T TIGR00551 72 -CDREAVEF---VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGG-----HSYRRILHA--ADATGREVITTLVKKALN 140 (488)
T ss_pred -CCHHHHHH---HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCC-----cCCCeEEEe--CCCCHHHHHHHHHHHHHh
Confidence 00000000 00111334556666777653222111100 0111 000011111 112346788888888887
Q ss_pred -cCCeEecCceEEEEEeeeccCCCcEEE--EeCCc-cEEEeCeEEEcCCcChh
Q 015072 166 -NGAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSG-EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g-~~i~ad~vV~A~G~~~~ 214 (413)
.|+++++++.|++|.. +++ ....+ ...++ ..+.++.||+|||+++.
T Consensus 141 ~~gi~i~~~~~v~~l~~--~~g-~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLI--ETG-RVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeec--cCC-EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 6999999999999987 632 22223 32222 26899999999999986
No 118
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.30 E-value=1.7e-10 Score=113.47 Aligned_cols=192 Identities=12% Similarity=0.136 Sum_probs=100.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (413)
.++||+|||+|++|+++|+.+++.|.+|+||||....++ ++....|.+........ .++. ..+.+..+....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g--~s~~a~Ggi~a~~~~~~-----~Ds~e~~~~Dt~~~g~~ 121 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS--HTVAAQGGINAALGNMT-----EDDWRWHMYDTVKGSDW 121 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC--chHHhhcCceeecCCCC-----CCCHHHHHHHHHHhhCC
Confidence 468999999999999999999999999999999876543 22222222221111000 0111 111222111000
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCC-----CeEEEEecCCeeecHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPE-----NWVGVTTELGGVIKPTKAVSM 158 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 158 (413)
. .....+.. -.+...+.++++...|+++.......+. ..+.. ..... .....+ . .--....+++.
T Consensus 122 -~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s~~~~~~g~~~r~~~-~--~d~tG~~i~~~ 192 (635)
T PLN00128 122 -L-GDQDAIQY---MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG-QSLDFGKGGQAYRCAC-A--ADRTGHAMLHT 192 (635)
T ss_pred -C-CCHHHHHH---HHHhHHHHHHHHHhCCCccccCCCCceeeccccc-cccccCCCcceeeeec-c--CCCCHHHHHHH
Confidence 0 00000000 0011133455666677765322111110 11111 00000 000001 0 00123568888
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChhh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~~ 215 (413)
|.+.+.+.|++++.++.+++|.. ++++..+.+. . .+|+ .+.|+.||+|||++...
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIM--DSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEE--cCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 88888888999999999999887 5222333332 2 3554 68999999999998753
No 119
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.30 E-value=6.7e-11 Score=115.98 Aligned_cols=41 Identities=32% Similarity=0.377 Sum_probs=36.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~ 45 (413)
..++||+|||+|++|+++|+.++++|.+|+||||....++.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 34799999999999999999999999999999999876543
No 120
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=1.6e-11 Score=120.23 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=97.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
++||+|||||++|+++|+.+++. |.+|+||||....++ .+....|.+........... ..+ ..+....+. +.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg--~s~~a~GGi~a~~~~~~~~d-s~e--~~~~d~~~~-~~ 76 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS--HSVAAQGGIAASLKNVDPED-SWE--AHAFDTVKG-SD 76 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch--hhHHhccchhhhccCCCCCC-CHH--HHHHHHHHH-hC
Confidence 58999999999999999999987 489999999876542 22212222221111000000 000 011111111 00
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.. .....+.. -.+...+.+.++...|+++.......+. ..+.. . ......+. .+ .....++..|.+.+
T Consensus 77 ~l-~d~~~v~~---l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~---~~~r~~~~-~~--~tG~~i~~~L~~~~ 145 (575)
T PRK05945 77 YL-ADQDAVAI---LTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGG-H---SHNRTCYA-AD--KTGHAILHELVNNL 145 (575)
T ss_pred CC-CCHHHHHH---HHHHHHHHHHHHHHcCCceEECCCCcEeeccccc-c---ccCeeEec-CC--CChHHHHHHHHHHH
Confidence 00 00000000 0001123344556667665433211110 00111 0 00011111 11 12357888888888
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.|+++++++.|+++.. +++ ....+ ...+++ .+.|+.||+|||+++.
T Consensus 146 ~~~gi~i~~~t~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 146 RRYGVTIYDEWYVMRLIL--EDN-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred hhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 888999999999999987 532 22222 334554 5899999999999875
No 121
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=2.2e-10 Score=112.21 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS 80 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (413)
|+.-..++||+|||+|.+|+++|..+++.|.+|+||||....++ ++....|.+....... ....-...+.+..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g--~t~~a~Ggi~a~~~~~----~~Ds~e~~~~D~~~ 74 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS--HTVSAQGGITVALGNT----HEDNWEWHMYDTVK 74 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC--ccHHhhhhHhhhcCCC----CCCCHHHHHHHHHH
Confidence 43334578999999999999999999999999999999876543 2222222221111100 00000111222211
Q ss_pred hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC----CCeEEEEecCCeeecHHHH
Q 015072 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP----ENWVGVTTELGGVIKPTKA 155 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~ 155 (413)
... .. .....+.. -.+...+.++++...|+++......... ..++. .... ......+.. + -....+
T Consensus 75 ~g~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~~~~~~~~r~~~~~-~--~~G~~i 145 (588)
T PRK08958 75 GSD-YI-GDQDAIEY---MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAAAA-D--RTGHAL 145 (588)
T ss_pred HhC-CC-CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeeccccc-ccccccccccceeEecC-C--CCHHHH
Confidence 100 00 00000000 0011134456666777766432111110 01111 0000 000111111 1 123567
Q ss_pred HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072 156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+..|.+.+.+.|+++++++.++++.. ++++..+.+. ..+|+ .+.|+.||+|||++..
T Consensus 146 ~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 146 LHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHhhhcCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 88888888888999999999999987 5323333332 34554 5889999999999875
No 122
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.29 E-value=4e-11 Score=118.50 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
..++||+|||+|.+|+++|..++++|.+|+||||.+..++ +|....|.+........ ......-...+.+..+....
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s--~s~~a~GGi~a~~g~~~-~g~~Ds~e~~~~Dt~k~~~~ 79 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS--HSAAAQGGMQASLGNAV-KGEGDNEDVHFADTVKGSDW 79 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc--chHHHhhhHHhhccccc-cCCCCCHHHHHHHHHHhcCC
Confidence 3569999999999999999999999999999999877542 22222222211110000 00000011122333222111
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHH---------HHH-----HhcCCcccCCCCeE------EEEe
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR---------QVL-----QKYSGRIEIPENWV------GVTT 144 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~---------~~~-----~~~p~~~~~~~~~~------~~~~ 144 (413)
.+....... -.....+.++++...|+++...... ... +..+. +.. ..+. ..+.
T Consensus 80 ~~D~~~vr~-----~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~-i~~-r~~GG~~~~R~~~~ 152 (657)
T PRK08626 80 GCDQEVARM-----FVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGL-INA-RDFGGTKKWRTCYT 152 (657)
T ss_pred CCCHHHHHH-----HHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccc-ccc-ccccccccceeEec
Confidence 110000000 0001123344555566654322100 000 00000 000 0111 1111
Q ss_pred cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072 145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVT-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
. ++ ....++..|.+.+.+.|++++.++.|++|.. +++. .++.+.+ .+|+ .+.|+.||+|||++..
T Consensus 153 ~-d~--tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~--~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 153 A-DG--TGHTMLYAVDNEAIKLGVPVHDRKEAIALIH--DGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred C-CC--cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 1 11 1245667788888889999999999999998 6321 2344443 4665 5789999999998875
No 123
>PRK07236 hypothetical protein; Provisional
Probab=99.29 E-value=8.5e-11 Score=110.18 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.|.+.+ .+++++++++|++++. + ++.+.++.++|+++++|.||.|.|.+|.
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQ--D--GDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 3444444432 3467999999999988 6 4567888888888999999999999885
No 124
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.28 E-value=1.6e-11 Score=116.32 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.+.++|...+-+.|.+.+++.|++++.+ .|+++.. ++++....|++.+|++++||.||-|+|..+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~--~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVEL--DEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE---TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEE--cCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4577899999999999999999999876 5888887 643345678888999999999999999755
No 125
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.28 E-value=5.9e-11 Score=112.42 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCe--EecCceEEEEEeeeccCCCcEEEEeCCc--c--EEEeCeEEEcCCcChhhhhhhhcC
Q 015072 152 PTKAVSMFQTLAIKNGAV--LRDNTEVKTVLKVKDDVRGGVTVVTSSG--E--EFWGKKCVVTAGAWVGKLVKKISG 222 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~--~i~ad~vV~A~G~~~~~l~~~~~g 222 (413)
..++.++|.+.+...|+. |+++++|++|.. . ++.|.|++.++ . +..+|+||+|+|.++.+..+.+.|
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~--~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEP--V--DGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEee--c--CCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCC
Confidence 367888888888888887 889999999998 6 46788876532 2 457899999999887655555434
No 126
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.28 E-value=7.9e-10 Score=98.60 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
+.+|+|||||++|+++|..|.++|++|+|+|+...+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 3679999999999999999999999999999976653
No 127
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1.4e-10 Score=114.42 Aligned_cols=193 Identities=18% Similarity=0.151 Sum_probs=95.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||+|.+|+++|..+++.|.+|+||||....++ +++....|.+....... .....-...+.+..+.....
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~-g~s~~a~GGi~a~~~~~---~~~Ds~~~~~~d~~~~g~~~ 109 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR-AHSIAAQGGINAAKNYQ---NDGDSVYRLFYDTVKGGDFR 109 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhchHhHhhcc---ccCCCHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999998655432 22222222221111000 00000111222222211000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecC-CeeecHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTEL-GGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 163 (413)
. ....+.. -.+...+.++++...|+++..-....+ ...++. .. .....+... .+..--..+.+.|.+.+
T Consensus 110 ~--d~~lv~~---l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gg-hs---~~R~~~~~~~tG~~i~~~l~~~L~~~~ 180 (640)
T PRK07573 110 A--REANVYR---LAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG-AQ---VSRTFYARGQTGQQLLLGAYQALSRQI 180 (640)
T ss_pred C--CHHHHHH---HHHHHHHHHHHHHhcCCccccCCCCceeccccCC-cc---cceeEeCCCCCchhHHHHHHHHHHHHH
Confidence 0 0000000 001113455666677776532110000 001111 00 001111110 11000012235566677
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
++.|++|++++.|++|.. +++ ..+.|. . .+|+ .+.|+.||+|||+++.
T Consensus 181 ~~~gV~i~~~t~v~~Li~--d~g-~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVV--VDG-RARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEE--eCC-EEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 788999999999999987 632 333333 2 2454 6899999999999875
No 128
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.27 E-value=3e-09 Score=98.57 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=42.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCCCcceecc
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRAT 58 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~~~~~~~~ 58 (413)
.|+|||||++||++||+|++++ .+|+|+|+++..||...|....|.....
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~ 53 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFER 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEee
Confidence 4999999999999999999998 8999999999998887777655554433
No 129
>PRK08275 putative oxidoreductase; Provisional
Probab=99.27 E-value=1.1e-10 Score=113.90 Aligned_cols=191 Identities=13% Similarity=0.121 Sum_probs=98.5
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHH
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQA 78 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (413)
|+....++||+|||+|.+|+++|..+++. |.+|+||||....++...+.+..+ +....... . .....++.++
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g-~~~~~~~~-~----d~~~~~~~d~ 76 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDG-LNNAVIPG-H----ATPEQYTKEI 76 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhh-HhhhhccC-C----CCHHHHHHHH
Confidence 44334568999999999999999999987 689999999886432211111111 11100000 0 0011122222
Q ss_pred HHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCe-EEEEecCCeeecHHHHHH
Q 015072 79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENW-VGVTTELGGVIKPTKAVS 157 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (413)
.+... .. .....+.. -.+...+.++++...|+++....... +...... .+.+.. ..-....+.+
T Consensus 77 ~~~~~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~--------~~~~~~~~~~~~~~--~~~~G~~i~~ 141 (554)
T PRK08275 77 TIAND-GI-VDQKAVYA---YAEHSFETIQQLDRWGVKFEKDETGD--------YAVKKVHHMGSYVL--PMPEGHDIKK 141 (554)
T ss_pred HHhcC-CC-ccHHHHHH---HHHhhHHHHHHHHHCCCeeEeCCCCC--------EeeecccccCcccc--cCCChHHHHH
Confidence 21110 00 00000000 00011334555666676553221110 0000000 000000 0012346788
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.|.+.+++.|+++++++.|++|.. ++++....+. ..+|+ .+.|+.||+|||+++.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLT--DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEE--cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 888888889999999999999987 6222223332 34554 5899999999999764
No 130
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=2e-10 Score=112.62 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=100.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhc
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEI 82 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (413)
|..++||+|||+|++|+++|+.+++. .+|+|+||....++ ++....|.+........ .++.+ .+.+..+.
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~~-----~D~~e~~~~d~~~~- 72 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS--HTGAAQGGMCAALANVE-----EDNWEWHTFDTVKG- 72 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC--CchhhhcchhhcccCCC-----CCCHHHHHHHHHHh-
Confidence 34579999999999999999999986 89999999876542 22222222221111000 00011 11111111
Q ss_pred CCeeEeeeeeeeeCCCC-----hHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCC----CCeEEEEecCCeeecH
Q 015072 83 GYKVYFKAHQFDMGPSE-----NKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIP----ENWVGVTTELGGVIKP 152 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~----~~~~~~~~~~~~~~~~ 152 (413)
+.. ....+ .+...+.++++..+|+++........ ...++. .... ......+.. + ...
T Consensus 73 g~~---------~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~r~~~~~-~--~tG 139 (583)
T PRK08205 73 GDY---------LVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGG-HTRDHGKAPVRRACYAA-D--RTG 139 (583)
T ss_pred hcC---------CCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccccc-ccccccCCCccceeccC-C--CCH
Confidence 100 00000 01123345666777876543221111 111121 0000 000011110 0 124
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC---CCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV---RGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~---~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
..+++.|.+.+.+.|+++++++.|++|.. +++ +....+ ...+++ .+.|+.||+|||.++.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~--~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLL--TETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 67888898888889999999999999987 531 223333 224554 5899999999999874
No 131
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.26 E-value=1.5e-10 Score=113.42 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=51.2
Q ss_pred CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc-EEEe-CeEEEcCCcChh
Q 015072 147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE-EFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~-~i~a-d~vV~A~G~~~~ 214 (413)
....++..+++.|.+.+++.|++|+++++|++|.. +++. .++.+...++. ++++ +.||+|+|.|+.
T Consensus 211 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 211 MHLVNGNALVARLLKSAEDLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred CcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 34567788999999999999999999999999988 6321 12344444554 5889 999999999986
No 132
>PRK07208 hypothetical protein; Provisional
Probab=99.25 E-value=5.5e-10 Score=107.88 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=42.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
++..||+|||||++|+++|++|+++|++|+|+|+.+..||...+....+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g 50 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG 50 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence 4467999999999999999999999999999999999888766644333
No 133
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.25 E-value=1.5e-10 Score=111.92 Aligned_cols=43 Identities=35% Similarity=0.481 Sum_probs=37.5
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
|+.-..++||||||+| +|+++|+++++.|.+|+||||....++
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5444457999999999 999999999999999999999887654
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=5.7e-11 Score=117.14 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=97.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||+|++|+++|..+++.|.+|+||||....++ +|....|.+.......... ..-...+.+..+....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~---ds~~~~~~D~~~~g~~- 80 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMGNVNPK---DNWQVHFRDTMRGGKF- 80 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeeccCCCCC---CCHHHHHHHHHHHhcc-
Confidence 468999999999999999999999999999999876542 3333333332221110000 0001111111111000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
. .....+.. -.+...+.+.++...|+++.......+.. .+.. .. +....... -.....++..|.+.+.
T Consensus 81 l-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~r~~~~~--~~tG~~i~~~L~~~~~ 149 (626)
T PRK07803 81 L-NNWRMAEL---HAKEAPDRVWELETYGALFDRTKDGRISQRNFGG-HT----YPRLAHVG--DRTGLELIRTLQQKIV 149 (626)
T ss_pred C-CcHHHHHH---HHHHhHHHHHHHHHCCCceEecCCCceeeeecCC-cc----cCeEEecC--CCcHHHHHHHHHHHHH
Confidence 0 00000000 00011223345566777654322111100 1111 00 00011110 1123567788888776
Q ss_pred Hc--------C-----CeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 165 KN--------G-----AVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~--------g-----v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+. | ++++.++.|+++.. +++ ..+.+ ...+++ .+.|+.||+|||++..
T Consensus 150 ~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 150 SLQQEDHAELGDYEARIKVFAECTITELLK--DGG-RIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred hhhccccccccCCcCceEEEeCCEEEEEEE--ECC-EEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 66 6 99999999999987 632 22222 234554 6899999999998654
No 135
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.25 E-value=2.9e-10 Score=109.18 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++.+++|+++.. + ++.+.+++.+|+++.+|.||+|+|...+
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEG--G--DDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEE--e--CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 45667788888889999999999999987 5 3456666777778999999999998754
No 136
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.25 E-value=2.6e-10 Score=111.96 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=96.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCCeeE
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGYKVY 87 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (413)
||+|||+|++|+++|+.+++.|.+|+||||....++ .+....|.+......... ..+.+ .+.+........
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~~~----~d~~e~~~~d~~~~~~~~-- 72 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS--HTVAAQGGMAAALGNVDP----DDSWEWHAYDTVKGSDYL-- 72 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--cchhhccCeEeecCCCCC----CccHHHHHHHHHHHhCCC--
Confidence 899999999999999999999999999999876532 222222222211110000 00001 111111110000
Q ss_pred eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN 166 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (413)
.....+.. -.+...+.++++...|+++......... ..+.. . ......+... .....+...|.+.+++.
T Consensus 73 ~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~---~~~r~~~~~~---~~G~~i~~~L~~~~~~~ 142 (566)
T TIGR01812 73 ADQDAVEY---MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGG-H---SKDRTCYAAD---KTGHALLHTLYEQCLKL 142 (566)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCcEeeccccc-c---ccCeeEECCC---CCHHHHHHHHHHHHHHc
Confidence 00000000 0001123445566677655432211110 01111 0 0001111111 12346778888888888
Q ss_pred CCeEecCceEEEEEeeeccCCCcEEE--E-eCCcc--EEEeCeEEEcCCcChh
Q 015072 167 GAVLRDNTEVKTVLKVKDDVRGGVTV--V-TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 167 gv~i~~~~~V~~i~~~~~~~~~~~~v--~-~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
|+++++++.|++|.. +++ ....+ . ..+|+ .+.|+.||+|||.++.
T Consensus 143 gv~i~~~~~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 143 GVSFFNEYFALDLIH--DDG-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred CCEEEeccEEEEEEE--eCC-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 999999999999988 632 22222 2 24554 5899999999999874
No 137
>PLN02487 zeta-carotene desaturase
Probab=99.24 E-value=1.1e-08 Score=98.93 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-C---cEEEEe---CCccEEEeCeEEEcCCcChh-hhhh
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-G---GVTVVT---SSGEEFWGKKCVVTAGAWVG-KLVK 218 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~---~~~v~~---~~g~~i~ad~vV~A~G~~~~-~l~~ 218 (413)
.+...+.+.+++.|++|+++++|.+|.. +++. + ...+++ .+++++.+|.||+|++.+.- .|++
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~--~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp 366 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILY--DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP 366 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEE--ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence 4778888999999999999999999998 6321 2 344555 33446899999999998743 4443
No 138
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=4.8e-10 Score=110.00 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=98.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (413)
.++||+|||+|.+|+++|..+++.|.+|+||||....++ .+....|.+....... . ..+. ..+.+......
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g--~t~~a~Ggi~~~~~~~--~---~ds~~~~~~dt~~~g~- 82 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS--HTVAAQGGIGASLGNM--S---EDNWHYHFYDTIKGSD- 82 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhccCCcccccccc--c---ccChhHhHHHHHHhcC-
Confidence 468999999999999999999999999999999866543 2222222222111100 0 0010 11111111100
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccC----CCCeEEEEecCCeeecHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEI----PENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
. ......+.. -.+...+...++...|+++.......+. ..+.. ... .......+. .+ -....+++.|
T Consensus 83 ~-~~d~~~v~~---~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~s~~~~~~~~~r~~~~-~~--~tG~~l~~~L 154 (591)
T PRK07057 83 W-LGDQDAIEF---MCREAPNVVYELEHFGMPFDRNADGTIYQRPFGG-HTANYGEKPVQRACAA-AD--RTGHALLHTL 154 (591)
T ss_pred C-CCCHHHHHH---HHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCC-ccccccCCccceeeec-CC--CChHHHHHHH
Confidence 0 000000000 0011123345556667765432111110 00111 000 000001111 10 1135688888
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+.|++++.++.++++.. ++++..+.|. ..+|+ .+.++.||+|||.++.
T Consensus 155 ~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 155 YQQNVAAKTQFFVEWMALDLIR--DADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHhcCCEEEeCcEEEEEEE--cCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 8888889999999999999987 5322333332 23454 6889999999999875
No 139
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.23 E-value=2.8e-09 Score=102.45 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=39.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCCCc
Q 015072 9 DVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~------g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
+|+|||||++||++|++|++. |.+|+|+|+.+..||+..|....+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g 53 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD 53 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC
Confidence 699999999999999999986 379999999999998877764433
No 140
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.23 E-value=6e-11 Score=114.42 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=96.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
++||+|||+|.+|+++|..+++ |.+|+||||....++ ++....|.+.......+ .-...+.++.+.....
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~d------s~e~~~~d~~~~g~~~- 72 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS--NSHLAQGGIAAAVATYD------SPNDHFEDTLVAGCHH- 72 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC--CchhcCccceecccCCC------CHHHHHHHHHHhccCc-
Confidence 6899999999999999999976 899999999987543 33222222222111110 0111222222211000
Q ss_pred EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.....+.. -.+...+.++++...|+++..-....+. ..+.. ......+.. .+-..+..+++.|.+.+.
T Consensus 73 -~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-----~~~~r~~~~-~gd~~g~~i~~~L~~~~~- 141 (510)
T PRK08071 73 -NNERAVRY---LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGA-----HRKRRILHA-GGDATGKNLLEHLLQELV- 141 (510)
T ss_pred -CCHHHHHH---HHHHHHHHHHHHHHcCCccccCCCCceeeccCcC-----ccCCeEEec-CCCCcHHHHHHHHHHHHh-
Confidence 00000000 0011123445556667665321111100 00000 000011111 111234667888887775
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEE--EeCCcc--EEEeCeEEEcCCcChh
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.|+++++++.|+++.. +++ ..+.+ ...+++ .+.|+.||+|||+++.
T Consensus 142 ~gV~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLII--ENG-RCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheee--cCC-EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 6899999999999987 532 22333 333444 5899999999999875
No 141
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.22 E-value=1.5e-10 Score=109.94 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=95.9
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCCeeEeee
Q 015072 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGYKVYFKA 90 (413)
Q Consensus 12 IIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (413)
|||+|.+|+++|+.++++|.+|+||||.+.....+.+.. .+........ ..+..-......+++++.+..+.......
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999999999999875311122211 1111110100 00000011112344444433221100000
Q ss_pred eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeE
Q 015072 91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVL 170 (413)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i 170 (413)
... + .+...+..+++.+.|++++..... .++. . ....+... ....+++.|.+.+++.|++|
T Consensus 80 ~~~-~----~~~s~~~i~wl~~~Gv~f~~~~~g----~~~~----~--~~~~~~~~----~g~~l~~~L~~~a~~~Gv~i 140 (432)
T TIGR02485 80 SRL-G----IGRGSRDLRWAFAHGVHLQPPAAG----NLPY----S--RRTAFLRG----GGKALTNALYSSAERLGVEI 140 (432)
T ss_pred HHH-H----HhcchhHHHHHHhCCceeeecCCC----Cccc----c--CceeeecC----CHHHHHHHHHHHHHHcCCEE
Confidence 000 0 001133455666667655322110 0110 0 00111111 23568889999999999999
Q ss_pred ecCceEEEEEeeecc-CCCcEEEEeC-CccEEEeCeEEEcCCcChh
Q 015072 171 RDNTEVKTVLKVKDD-VRGGVTVVTS-SGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 171 ~~~~~V~~i~~~~~~-~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~ 214 (413)
+++++|++|.. ++ ++..+.+... ++.++.++.||+|+|.+..
T Consensus 141 ~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 141 RYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred EeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 99999999987 62 2233344433 3347999999999998754
No 142
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=2.2e-10 Score=112.46 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=96.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQS 80 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g---~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (413)
..++||+|||+|.+|+++|..+++.| .+|+||||....++ ++....|.+........ ..+.+ .+....+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~--~s~~a~Gg~~a~~~~~~-----~ds~e~~~~d~~~ 75 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS--HSVSAEGGTAAVLYPEK-----GDSFDLHAYDTVK 75 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC--Cceecccccceeecccc-----CCCHHHHHHHHHH
Confidence 34689999999999999999999998 89999999987643 22222222211111100 00100 1111111
Q ss_pred hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
. +... .....+.. -.+...+.++++...|+++.......+. ..+.. . ......+.. + -....+++.|
T Consensus 76 ~-g~~~-~d~~lv~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-~---~~~r~~~~~-d--~tG~~i~~~L 143 (577)
T PRK06069 76 G-SDFL-ADQDAVEV---FVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGG-M---SFPRTTFAA-D--KTGFYIMHTL 143 (577)
T ss_pred h-hccc-CCHHHHHH---HHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCC-c---ccceeeEcC-C--CchHHHHHHH
Confidence 1 0000 00000000 0001123345666677655322111100 00111 0 000011111 1 0135577888
Q ss_pred HHHHHH-cCCeEecCceEEEEEeeeccCCCcEE--E-EeCCcc--EEEeCeEEEcCCcChh
Q 015072 160 QTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVT--V-VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~--v-~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+ .|++++.++.|+++.. +++ ..+. + ...+++ .+.|+.||+|||+++.
T Consensus 144 ~~~~~~~~gv~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 144 YSRALRFDNIHFYDEHFVTSLIV--ENG-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHhcCCCEEEECCEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 887766 5899999999999987 532 2222 2 234554 5899999999999853
No 143
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.21 E-value=2.3e-10 Score=103.63 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
..+...+.+.+.+.|++++. ++|+++.. . +..+.+.+.+++++.+|+||+|+|.+.
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDL--S--DRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEe--c--CCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 35566677778888999987 89999988 6 456778777777899999999999864
No 144
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.21 E-value=5.8e-11 Score=114.61 Aligned_cols=187 Identities=16% Similarity=0.090 Sum_probs=95.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
..++||+|||+|++|+++|..++ +.+|+||||.....+ +++....|.+........ .-...++++.+....
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~g-g~s~~a~Ggi~~~~~~~d------s~e~~~~d~~~~~~g 77 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEG-ASSAWAQGGIAAALGPDD------SPALHAADTLAAGAG 77 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCC-cchHHhhhccccccCCCC------CHHHHHHHHHHhhCC
Confidence 45799999999999999999997 579999999886322 222222222221111100 011122222221100
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
. .....+.. -.+...+.++++...|+++..-....... .+.. ......+... +--.+..++..|.+.+
T Consensus 78 ~--~d~~~v~~---~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~-----~~~~r~~~~~-g~~~G~~l~~~L~~~~ 146 (513)
T PRK07512 78 L--CDPAVAAL---ITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAA-----HSRRRIVHVG-GDGAGAAIMRALIAAV 146 (513)
T ss_pred C--CCHHHHHH---HHHHHHHHHHHHHHhCCccccCCCCccccccccC-----ccCCcEEEcC-CCCCHHHHHHHHHHHH
Confidence 0 00000000 00111334556666776543211111100 0000 0000011110 1112467888888888
Q ss_pred HHc-CCeEecCceEEEEEeeeccCCCcEEE--EeCCcc-EEEeCeEEEcCCcChh
Q 015072 164 IKN-GAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE-EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~ad~vV~A~G~~~~ 214 (413)
.+. |++++.++.|++|.. ++ +..+.+ ...++. .+.|+.||+|||+++.
T Consensus 147 ~~~~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 147 RATPSITVLEGAEARRLLV--DD-GAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HhCCCCEEEECcChhheee--cC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 765 899999999999987 53 233333 333332 5899999999999763
No 145
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=5.2e-10 Score=109.69 Aligned_cols=189 Identities=13% Similarity=0.040 Sum_probs=95.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (413)
++||+|||+|++|+++|..+++.|.+|+||||....++ ++....|.+....... .....-...+.+..+... ..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~---~~~Ds~e~~~~d~~~~g~-~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS--HSVCAQGGINGAVNTK---GEGDSPWIHFDDTVYGGD-FL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC--cccccCCCeEEecCcC---CCCCCHHHHHHHHHHhcC-Cc
Confidence 57999999999999999999999999999999887543 3332323332111100 000000111222211110 00
Q ss_pred EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.....+.. -.+...+.++++...|+++.......+. ..+.. .... ...+ .+-.....++..|.+.+.+
T Consensus 77 -~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~---R~~~---~~~~tG~~i~~~L~~~~~~ 145 (589)
T PRK08641 77 -ANQPPVKA---MCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGG-TLHH---RTAF---AGATTGQQLLYALDEQVRR 145 (589)
T ss_pred -CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCC-eecc---cccc---cCCCcHHHHHHHHHHHHHh
Confidence 00000000 0011123445566667665321110000 00010 0000 0001 0111345677788777665
Q ss_pred cC----CeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072 166 NG----AVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~g----v~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+ ++++.++.++++.. ++++..+.|. . .+++ .+.|+.||+|||+++.
T Consensus 146 ~~~~~~i~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 146 YEVAGLVTKYEGWEFLGAVL--DDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred hhccCCcEEEeeEEEEEEEE--CCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 43 78889999999987 5323333333 3 2344 5789999999999875
No 146
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.21 E-value=6.9e-10 Score=108.41 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=97.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
++||+|||+|++|+++|+.+++. |.+|+||||....++ .+....|.+.......... ..++++..+. +.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~--~s~~a~Gg~~~~~~~~ds~------e~~~~dt~~~-g~ 73 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS--HTVAAEGGSAAVTGDDDSL------DEHFHDTVSG-GD 73 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--CchhcCCchhhhcCCCCCH------HHHHHHHHHh-cC
Confidence 58999999999999999999987 589999999977643 2222222221111111000 1112222211 10
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.. .....+.. -.+...+.++++...|+++.......+ ...++. .. ..-.+...+ -....+++.|.+.+
T Consensus 74 ~~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~R~~~~~~--~~G~~i~~~L~~~~ 142 (580)
T TIGR01176 74 WL-CEQDVVEY---FVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG-MK----KERTWFAAD--KTGFHMLHTLFQTS 142 (580)
T ss_pred Cc-CcHHHHHH---HHHHhHHHHHHHHHcCCccEecCCCceeeeccCC-cc----CCeeeecCC--CCHHHHHHHHHHHH
Confidence 00 00000000 001113344556667776543221111 011111 00 000111111 02356788888877
Q ss_pred HH-cCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072 164 IK-NGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+ .+++++.++.++++.. +++ ..+.+ ...+|+ .+.|+.||+|||.++.
T Consensus 143 ~~~~~i~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 143 LTYPQIMRYDEWFVTDLLV--DDG-RVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HhcCCCEEEeCeEEEEEEe--eCC-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 66 4799999999999998 632 22222 334564 6899999999999875
No 147
>PRK12839 hypothetical protein; Provisional
Probab=99.20 E-value=2.5e-10 Score=111.24 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCc--EEEEeCCcc-EEE-eCeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG--VTVVTSSGE-EFW-GKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~-ad~vV~A~G~~~~ 214 (413)
.++..++..|.+.+++.|++|+.+++|++|.. ++++.. +.+...+++ .+. ++.||+|||+|+.
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~--~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTT--DKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 46778888999999999999999999999987 532333 334445555 344 4899999999976
No 148
>PLN02815 L-aspartate oxidase
Probab=99.20 E-value=9.7e-11 Score=114.17 Aligned_cols=186 Identities=11% Similarity=0.082 Sum_probs=97.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||+|.+|+++|+.+++.| +|+||||....++ ++....|.+....... ..-..++.++.+.....
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg--~s~~a~Ggi~a~~~~~------Ds~e~~~~d~~~~g~~~ 98 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES--NTNYAQGGVSAVLDPS------DSVESHMRDTIVAGAFL 98 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC--cHHHhhcccccCCCCC------CCHHHHHHHHHHhccCC
Confidence 4689999999999999999999999 9999999887643 2322222222111110 00111222222211000
Q ss_pred eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
. ....+. .-.+...+.++++..+|+++..-...... ..+.. .. .....+. . -.....++..|.+.+.
T Consensus 99 ~--d~~lv~---~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s---~~R~~~~-~--d~tG~~i~~~L~~~~~ 166 (594)
T PLN02815 99 C--DEETVR---VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGG-HS---HHRIVHA-A--DMTGREIERALLEAVK 166 (594)
T ss_pred C--cHHHHH---HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCC-Cc---cCceeec-C--CCCHHHHHHHHHHHHH
Confidence 0 000000 00011133455566677665322111100 00111 00 0000111 1 1123567788888877
Q ss_pred Hc-CCeEecCceEEEEEeeeccCCC---cEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072 165 KN-GAVLRDNTEVKTVLKVKDDVRG---GVTVV---TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~-gv~i~~~~~V~~i~~~~~~~~~---~~~v~---~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+. |+++++++.+++|.. +++++ .+.+. ..+|+ .+.|+.||+|||++..
T Consensus 167 ~~~~i~i~~~~~~~~Li~--~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLT--SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeee--ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 65 899999999999987 53221 33333 23554 5789999999998875
No 149
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.20 E-value=7.3e-10 Score=105.97 Aligned_cols=177 Identities=15% Similarity=0.061 Sum_probs=94.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY 87 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (413)
+||+|||+|++|+++|..+++.|.+|+||||.... +++....+.+.......+. -...+.+..+.... .
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~---~~s~~a~ggi~~~~~~~ds------~e~~~~d~~~~~~~-~- 70 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK---SNSYLAQAGIAFPILEGDS------IRAHVLDTIRAGKY-I- 70 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC---CCcHHHcCCcccccCCCCc------HHHHHHHHHHHhcC-C-
Confidence 79999999999999999999999999999997532 2222222222111110000 00111111111000 0
Q ss_pred eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG 167 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (413)
.....+.. -.+...+.++++...|+++.... .... ...+ ..+.... .....+++.|.+.+++.|
T Consensus 71 ~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~------~~~g-~~~~----r~~~~~~--~~G~~i~~~L~~~~~~~g 134 (466)
T PRK08401 71 NDEEVVWN---VISKSSEAYDFLTSLGLEFEGNE------LEGG-HSFP----RVFTIKN--ETGKHIIKILYKHARELG 134 (466)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCC------CcCC-ccCC----eEEECCC--CchHHHHHHHHHHHHhcC
Confidence 00000000 00111234455666676543210 0111 0000 1111111 123578888989998899
Q ss_pred CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072 168 AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l 216 (413)
++++.. .++++.. ++ +..+.+.. +++.+.++.||+|||.++..+
T Consensus 135 v~i~~~-~v~~l~~--~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 135 VNFIRG-FAEELAI--KN-GKAYGVFL-DGELLKFDATVIATGGFSGLF 178 (466)
T ss_pred CEEEEe-EeEEEEe--eC-CEEEEEEE-CCEEEEeCeEEECCCcCcCCC
Confidence 999865 7888876 52 23344544 455699999999999998643
No 150
>PRK06116 glutathione reductase; Validated
Probab=99.20 E-value=1e-09 Score=104.95 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+.+.+++.|++++++++|+++.. +++ +.+.+.+.+|+++.+|.||+|+|...+
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~-g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEK--NAD-GSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEE--cCC-ceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 45667778888899999999999999987 522 336677778888999999999997543
No 151
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.19 E-value=1.5e-10 Score=113.30 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=96.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (413)
.++||+|||+|.+|+++|+.+++. |.+|+||||....++ ++....|.+......... -...+.+..+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~ds------~e~~~~d~~~~g~ 74 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS--HTVAAEGGSAAVAQDHDS------FDYHFHDTVAGGD 74 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--ChhhccchhhhhcCCCCC------HHHHHHHHHHhcc
Confidence 468999999999999999999987 479999999876543 222222222211111000 0111222211100
Q ss_pred CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
. ......+.. -.+...+.++++...|+++.......+ ...++. .. ..-.+...+. ....+++.|.+.
T Consensus 75 ~--~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~r~~~~~~~--~G~~i~~~L~~~ 142 (582)
T PRK09231 75 W--LCEQDVVEY---FVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG-MK----IERTWFAADK--TGFHMLHTLFQT 142 (582)
T ss_pred c--CCCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeeecccc-cc----CCeeEecCCC--cHHHHHHHHHHH
Confidence 0 000000000 001113345566677776543221111 011111 00 0001111110 124677777777
Q ss_pred HHHc-CCeEecCceEEEEEeeeccCC-CcEE-EEeCCcc--EEEeCeEEEcCCcChh
Q 015072 163 AIKN-GAVLRDNTEVKTVLKVKDDVR-GGVT-VVTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~-gv~i~~~~~V~~i~~~~~~~~-~~~~-v~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+.+. +++++.++.|+++.. +++. .++. +...+|+ .+.|+.||+|||.++.
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 6664 799999999999998 6321 1222 2335564 6899999999999875
No 152
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.19 E-value=4.4e-10 Score=103.25 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcC-hhhhhhhh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAW-VGKLVKKI 220 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~-~~~l~~~~ 220 (413)
.++.+.|.+.+++.|++++.+++|+++.. ++ +....+.+.++ ..+.||+||+|+|+| ++.+...+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~--~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF--EG-NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe--eC-CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 57788899999999999999999999998 62 23344555555 369999999999999 88887776
No 153
>PTZ00367 squalene epoxidase; Provisional
Probab=99.18 E-value=6.9e-09 Score=100.53 Aligned_cols=35 Identities=43% Similarity=0.642 Sum_probs=33.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 154
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.18 E-value=7.3e-10 Score=107.64 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=96.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
..++||+|||+|.+|+++|+.++ .|.+|+||||....++ ++....|.+........ .....+.++.+....
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg--~s~~a~Ggi~a~~~~~d------s~e~~~~d~~~~g~~ 77 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS--ASDWAQGGIAAAIAPDD------SPKLHYEDTLKAGAG 77 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC--chhhhcccceecccCCC------CHHHHHHHHHHhcCC
Confidence 45789999999999999999996 4999999999887543 23222222221111110 011122222221110
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
.. ....+.. -.+...+.++++...|+++...+.......+.. ......+...+ -....++..|.+.+.
T Consensus 78 ~~--d~~lv~~---~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g-----~s~~r~~~~~d--~~G~~i~~~L~~~~~ 145 (553)
T PRK07395 78 LC--DPEAVRF---LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA-----HSRPRVLHAAD--TTGRAIVTTLTEQVL 145 (553)
T ss_pred CC--CHHHHHH---HHHHHHHHHHHHHhcCCeeecCCCceeeecccc-----cccCeEEEeCC--CChHHHHHHHHHHHh
Confidence 00 0000000 001113344556666765532211000000011 00001111111 013567788888776
Q ss_pred Hc-CCeEecCceEEEEEeeeccC-CCcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072 165 KN-GAVLRDNTEVKTVLKVKDDV-RGGVTVVT-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~-gv~i~~~~~V~~i~~~~~~~-~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
+. |+++++++.|++|.. +++ +..+.+.. .+++ .+.|+.||+|||.+..
T Consensus 146 ~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWL--EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhhee--cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 54 899999999999987 631 22233322 3454 4789999999999643
No 155
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.17 E-value=1.1e-09 Score=104.87 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-----EEEeCeEEEcCCcC
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-----EFWGKKCVVTAGAW 212 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~vV~A~G~~ 212 (413)
+..+.+.+.+.+++.|++|+++++|++|.. .+++..+.+++.+++ ++.+|.||+|+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 466788888888889999999999999986 533234455554443 69999999999864
No 156
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.17 E-value=3.2e-10 Score=106.33 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+.+.+...|++++++++|++|.. ++++..+.|++.+|++++|+.||.....+..
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 57888898888899999999999999988 6333457788889988999999987776643
No 157
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.17 E-value=5.5e-10 Score=106.80 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=51.2
Q ss_pred eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
+.+|+..+.+.+.+.+++. |+.++ ...|+++.. ++++..+.|.+.+|..+.|+.||+|||.|.
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~--e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLIL--EDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--ecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 6778999999999998887 68886 567888876 422356678888888899999999999994
No 158
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.16 E-value=2.6e-10 Score=103.52 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=48.2
Q ss_pred eeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072 148 GVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA 211 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~ 211 (413)
..+|...|.+.+.+.+++ .+++++ +.+|++|.. ++ +....|.+.+|+.+.+|.||+|||.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~-~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV--EN-GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE--CT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe--cC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence 457778899999888887 578886 689999988 63 3677889999999999999999999
No 159
>PLN02576 protoporphyrinogen oxidase
Probab=99.15 E-value=1.2e-08 Score=99.17 Aligned_cols=49 Identities=39% Similarity=0.470 Sum_probs=43.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCCCCc
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
..++||+|||||++||++|++|+++ |++|+|+|+.+..||+..|....|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g 59 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG 59 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC
Confidence 3467999999999999999999999 999999999999998877765444
No 160
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=6.3e-10 Score=108.47 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeC-eEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGK-KCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad-~vV~A~G~~~~ 214 (413)
..++..|.+.+++.|++++++++|++|.. +++ ..+.|.. .+++ .+.++ .||+|||.+..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~--~~g-~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIV--EDG-RVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCC-EEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 56777888889999999999999999998 632 3333322 2343 57885 69999999875
No 161
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.15 E-value=1e-09 Score=99.38 Aligned_cols=50 Identities=38% Similarity=0.525 Sum_probs=43.5
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCC
Q 015072 2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~ 51 (413)
+...+..||||||+|++||++|++|.+.|++|+|+|..+..||+..+...
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 33456799999999999999999999999999999999999888665444
No 162
>PRK06370 mercuric reductase; Validated
Probab=99.15 E-value=1.3e-09 Score=104.49 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
|+.+|||+|||||++|+++|..|+++|++|+|||+...+|+
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~ 42 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGT 42 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCc
Confidence 55679999999999999999999999999999999765543
No 163
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=6.8e-10 Score=108.34 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=39.0
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
|.+...++||+|||+|.+|+++|+.++++|++|+||||....++
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 55556689999999999999999999999999999999877653
No 164
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=3.6e-10 Score=94.63 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=88.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEe
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYF 88 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (413)
+|+|||+|++|+++|+.|++.|++|+|+||+.-.||+.+|....++-.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~-------------------------------- 50 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRF-------------------------------- 50 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccc--------------------------------
Confidence 699999999999999999999999999999987777776654332210
Q ss_pred eeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCC
Q 015072 89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGA 168 (413)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 168 (413)
..|.-++.. ..+.+.+..+.+.+.|+- +..........-.. +. +.....-|.... . +..+.+. .....
T Consensus 51 DhGAqYfk~-~~~~F~~~Ve~~~~~glV-~~W~~~~~~~~~~~-~~-~~~d~~pyvg~p------g-msalak~-LAtdL 118 (331)
T COG3380 51 DHGAQYFKP-RDELFLRAVEALRDDGLV-DVWTPAVWTFTGDG-SP-PRGDEDPYVGEP------G-MSALAKF-LATDL 118 (331)
T ss_pred cccceeecC-CchHHHHHHHHHHhCCce-eeccccccccccCC-CC-CCCCCCccccCc------c-hHHHHHH-Hhccc
Confidence 001111111 112223333333333321 11100000000000 00 000000011111 1 2233332 33457
Q ss_pred eEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcC-hhhhh
Q 015072 169 VLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAW-VGKLV 217 (413)
Q Consensus 169 ~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~-~~~l~ 217 (413)
+|+++++|+++.. . ++.|++.+++|. ...+|.||+|.-+- +..|+
T Consensus 119 ~V~~~~rVt~v~~--~--~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL 165 (331)
T COG3380 119 TVVLETRVTEVAR--T--DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL 165 (331)
T ss_pred hhhhhhhhhhhee--c--CCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence 7888999999999 7 578999996654 68899999998753 33444
No 165
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.14 E-value=4.3e-11 Score=113.08 Aligned_cols=146 Identities=26% Similarity=0.328 Sum_probs=36.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEe
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYF 88 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (413)
||||||||++|+++|+.+++.|.+|+|||+....|+..++.+.. .+... .... ......+.++.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~-~~~~~----~~~~--~~~~gi~~e~~~~~~----- 68 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVS-PFDGN----HDED--QVIGGIFREFLNRLR----- 68 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS--EETTE----EHHH--HHHHHHHHHHHHST------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcC-Chhhc----chhh--ccCCCHHHHHHHHHh-----
Confidence 89999999999999999999999999999999887654433221 11000 0000 111112222222110
Q ss_pred eeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCC
Q 015072 89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGA 168 (413)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 168 (413)
..+.. . .. . ...+. ....++|..+...+.+.+.+.|+
T Consensus 69 -----------------------~~~~~----~-~~-----~-----~~~~~-----~~~~~~~~~~~~~l~~~l~e~gv 105 (428)
T PF12831_consen 69 -----------------------ARGGY----P-QE-----D-----RYGWV-----SNVPFDPEVFKAVLDEMLAEAGV 105 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------hhccc----c-cc-----c-----ccccc-----ccccccccccccccccccccccc
Confidence 00000 0 00 0 00000 00234455555666667777899
Q ss_pred eEecCceEEEEEeeeccCC-CcEEEEeCCcc-EEEeCeEEEcCCc
Q 015072 169 VLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE-EFWGKKCVVTAGA 211 (413)
Q Consensus 169 ~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~-~i~ad~vV~A~G~ 211 (413)
++++++.|+++.. +++. .++.+.+.+|. +++|+.||.|||-
T Consensus 106 ~v~~~t~v~~v~~--~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 106 EVLLGTRVVDVIR--DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 9999999999999 7432 23444433344 7999999999994
No 166
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.13 E-value=7.9e-10 Score=107.54 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=35.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~ 45 (413)
..++||||||+| +|+++|..+++.|.+|+||||.+..||.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 357999999999 8999999999999999999998776643
No 167
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.13 E-value=2.1e-09 Score=102.57 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+.+.+++.|+++++++.|+++.. + ++.+.+.+++++ +.+|.||+|+|...+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~v~v~~~~g~-i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISH--H--ENQVQVHSEHAQ-LAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEEcCCe-EEeCEEEEeecCCcC
Confidence 45677788888899999999999999988 6 345666666665 899999999998765
No 168
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.3e-10 Score=98.18 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l 216 (413)
..+++.+.+.+...|+++.. ..|.++.. . .+.+.|++++++ ++|+.||+|||.....+
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~--~--~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVEL--E--GGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEee--c--CceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 67778888888888999885 77888877 5 227889999998 99999999999877543
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.12 E-value=6.9e-10 Score=108.34 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+++.+.+.+.+.|++++ +++|+++.. + +..+.+.+.+++ +.+++||+|||++..
T Consensus 60 ~~l~~~l~~~~~~~gv~~~-~~~V~~i~~--~--~~~~~V~~~~g~-~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 60 PELMQEMRQQAQDFGVKFL-QAEVLDVDF--D--GDIKTIKTARGD-YKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHHHHHHHHHcCCEEe-ccEEEEEEe--c--CCEEEEEecCCE-EEEeEEEECCCCccC
Confidence 4566667777778899986 788999887 5 345667776665 899999999999753
No 170
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.12 E-value=9.6e-10 Score=103.82 Aligned_cols=66 Identities=26% Similarity=0.243 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcC--CeEecCceEEEEEeeeccCCCcEEEEeCCccE--EEeCeEEEcCCcChhhhhhhhcCC
Q 015072 156 VSMFQTLAIKNG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEE--FWGKKCVVTAGAWVGKLVKKISGL 223 (413)
Q Consensus 156 ~~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~--i~ad~vV~A~G~~~~~l~~~~~g~ 223 (413)
...+...+.+.+ .++..++.|+.+.. +.+++.|.|+++++.. +.||.||+|||.++.+..+.+.|.
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~ 154 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL 154 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEe--cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc
Confidence 344445555555 35566777777777 5445789999888774 459999999999998887777554
No 171
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.12 E-value=4e-09 Score=102.63 Aligned_cols=187 Identities=14% Similarity=0.105 Sum_probs=96.6
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
..++||+|||+|.+|+++|+.+++. .+|+||||....++ ++....|.+........ .....+++..+....
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~d------s~e~~~~d~~~~g~~ 76 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETD------SIESHVEDTLIAGAG 76 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCc------cHHHHHHHHHHHccC
Confidence 3468999999999999999999986 89999999877543 33222333222111100 011122222211100
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHH----HHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR----QVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~----~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
.. ....+. .-.+...+.++++...|+++...... ... ..+.. ......+...+ .....+...|
T Consensus 77 ~~--d~~~v~---~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg-----~~~~r~~~~~~--~~G~~i~~~L 144 (536)
T PRK09077 77 LC--DEDAVR---FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGG-----HSHRRILHAAD--ATGKAVQTTL 144 (536)
T ss_pred CC--CHHHHH---HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCC-----ccCCceEecCC--CCHHHHHHHH
Confidence 00 000000 00011133455666677765432110 000 00110 00001111111 1234677777
Q ss_pred HHHHHHc-CCeEecCceEEEEEeeecc-----CCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072 160 QTLAIKN-GAVLRDNTEVKTVLKVKDD-----VRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~-gv~i~~~~~V~~i~~~~~~-----~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+. |+++++++.|+++.. ++ ++..+.+. . .+++ .+.++.||+|||+++.
T Consensus 145 ~~~~~~~~~I~v~~~~~v~~Li~--~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 145 VERARNHPNITVLERHNAIDLIT--SDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHhCCCcEEEeeEEeeeeee--cccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 7777664 899999999999987 52 12233332 2 3454 6899999999999875
No 172
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.12 E-value=1.9e-09 Score=105.87 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=90.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEee
Q 015072 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFK 89 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (413)
|+|||+|++|+++|..+++.|.+|+|+||....++ +++....|.+........ ........++++.+...... .
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~-g~s~~a~Ggi~a~~~~~~---~~ds~e~~~~d~~~~g~~~~--d 74 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR-AHSIAAQGGINGAVNTKG---DGDSPWRHFDDTVKGGDFRA--R 74 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC-ccchhhhhhhhhhcccCC---CCCCHHHHHHHHHHhcCCCC--C
Confidence 69999999999999999999999999999873321 222222222111110000 00001122222222111000 0
Q ss_pred eeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH---
Q 015072 90 AHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK--- 165 (413)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 165 (413)
...+.. -.+...+.++++...|+++........ ...++. .. .....+.. +. ....++..|.+.+++
T Consensus 75 ~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~---~~R~~~~~-~~--tG~~i~~~L~~~~~~~~~ 144 (603)
T TIGR01811 75 ESPVKR---LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGG-VQ---VSRTAYAR-GQ--TGQQLLLALDSALRRQIA 144 (603)
T ss_pred HHHHHH---HHHHHHHHHHHHHHcCCEEEecCCCccccccccC-cc---cCcceecC-CC--ChhHHHHHHHHHHHhhhc
Confidence 000000 001113345566667765532111100 011111 00 00011111 10 124555555555443
Q ss_pred -cCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072 166 -NGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~ 214 (413)
.|++++++++|++|.. ++++..+.|. . .+++ .+.|+.||+|||.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~--dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIV--VDGNRARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 3799999999999987 5322333333 2 2454 6899999999999754
No 173
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=7.4e-10 Score=108.40 Aligned_cols=40 Identities=38% Similarity=0.494 Sum_probs=36.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
..++||||||+|.+|+++|+.++++|.+|+||||....++
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 4578999999999999999999999999999999987654
No 174
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=9.4e-10 Score=102.44 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=90.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
....+|+|||||++||.+|++|.+.|++|+++||.+..||.-...-.....+ ...++.+...+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~---------------ss~Y~~l~tn~-- 66 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVH---------------SSVYKSLRTNL-- 66 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccc---------------cchhhhhhccC--
Confidence 3467999999999999999999999999999999988753211000000000 00011111100
Q ss_pred eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
+ .+.. .++. +.+++.. ....-+..+++++|...++
T Consensus 67 ------------------------------------p-Ke~~-~~~d-fpf~~~~------~~~~p~~~e~~~YL~~yA~ 101 (448)
T KOG1399|consen 67 ------------------------------------P-KEMM-GYSD-FPFPERD------PRYFPSHREVLEYLRDYAK 101 (448)
T ss_pred ------------------------------------C-hhhh-cCCC-CCCcccC------cccCCCHHHHHHHHHHHHH
Confidence 0 0000 1111 1111110 0011122478888888888
Q ss_pred HcCC--eEecCceEEEEEeeeccCC-CcEEEEeCCc----cEEEeCeEEEcCCcChhhhhhhhcC
Q 015072 165 KNGA--VLRDNTEVKTVLKVKDDVR-GGVTVVTSSG----EEFWGKKCVVTAGAWVGKLVKKISG 222 (413)
Q Consensus 165 ~~gv--~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g----~~i~ad~vV~A~G~~~~~l~~~~~g 222 (413)
..+. .|.++++|..+.. . . +.|.|.+.++ ++.-+|.||+|+|.+..+..+...+
T Consensus 102 ~F~l~~~i~f~~~v~~v~~--~--~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 102 HFDLLKMINFNTEVVRVDS--I--DKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred hcChhhheEecccEEEEee--c--cCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 7764 6788899999988 6 4 5788876543 3577999999999996444454433
No 175
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.09 E-value=1.4e-09 Score=114.41 Aligned_cols=183 Identities=19% Similarity=0.205 Sum_probs=96.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHH-HHHHhcC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWE-QAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 83 (413)
.++||||||+|.+|+++|..+++.|.+|+||||....++.+. ...+.+....... ..... .++.+.+. ..... +
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~--~s~ggi~~~~t~~q~~~gi-~D~~~~~~~d~~~~-~ 483 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA--KATSGINGWGTRAQAKQDV-LDGGKFFERDTHLS-G 483 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh--hcccccccCCchhhhhhcc-cccHHHHHHHHHHh-c
Confidence 468999999999999999999999999999999987654322 1112221110000 00000 01111111 11110 0
Q ss_pred CeeEeeeeeeeeCCCChHH-------HHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecC--Ceee--cH
Q 015072 84 YKVYFKAHQFDMGPSENKS-------LRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTEL--GGVI--KP 152 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~--~~ 152 (413)
.. . ..+.+. ..+.++++...|+++..... +.. .... .....+. .+.. ..
T Consensus 484 ~~------~----~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg-~~~~---r~~~~~~~~~g~~~~~G 543 (1167)
T PTZ00306 484 KG------G----HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQ------LGG-ASRK---RCHRAPDKKDGTPVPIG 543 (1167)
T ss_pred cC------C----CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeec------cCC-CCCC---ceeecCcccCCCcCCcH
Confidence 00 0 011111 13345566667776543210 111 0000 0111110 1110 12
Q ss_pred HHHHHHHHHHHHH---cCCeEecCceEEEEEeeeccC----C----CcEEE--EeC---Ccc--EEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIK---NGAVLRDNTEVKTVLKVKDDV----R----GGVTV--VTS---SGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~---~gv~i~~~~~V~~i~~~~~~~----~----~~~~v--~~~---~g~--~i~ad~vV~A~G~~~~ 214 (413)
..+++.|.+.+++ .|++|+++++++++.. +++ + ..+.| +.. +|+ .+.|+.||+|||.+..
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~--d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLS--ESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEe--cCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 4566677776654 4899999999999998 631 1 22333 333 554 6899999999999876
No 176
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.09 E-value=6.3e-09 Score=102.10 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=46.5
Q ss_pred ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEe-CeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~vV~A~G~~~~ 214 (413)
.++..++..|.+.+++.|+++++++.|++|.. ++ +....|.. .+++ ++.+ +.||+|||++..
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLET--DH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 34567888899999999999999999999987 52 23333433 2333 5776 689999999876
No 177
>PLN02268 probable polyamine oxidase
Probab=99.09 E-value=4.9e-09 Score=99.99 Aligned_cols=42 Identities=38% Similarity=0.415 Sum_probs=39.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~ 50 (413)
+|+|||||++|+++|+.|.++|++|+|+|+.++.||+..|..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~ 43 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY 43 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC
Confidence 799999999999999999999999999999999998877653
No 178
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.08 E-value=4.1e-09 Score=102.97 Aligned_cols=180 Identities=14% Similarity=0.191 Sum_probs=92.2
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCcEEEEcccCCCCCCCCCCCCCcc--eecccCCccccchHHHHHHHHHHHHHhc
Q 015072 9 DVIVVGAGIMGSSAAYQLA----KRGQKTLLLEQFDFLHHRGSSHGESRT--IRATYPEDYYHPMVLESSLLWEQAQSEI 82 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~----~~g~~V~lvE~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (413)
||+|||+|++|+++|+.++ +.|.+|+||||....++ .+. ..|. +........ . ...-...++...+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s--~s~-A~G~~gi~~~~~~~~--g-~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERS--GAV-AQGLSAINTYLGTRF--G-ENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCC--Ccc-ccccchhhhhhhccc--C-CCCHHHHHHHHHHhc
Confidence 8999999999999999998 67999999999876432 222 2221 111111000 0 000112222222211
Q ss_pred CCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccC-HHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD-CRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT 161 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (413)
. .. .....+. .-.+...+.++++...|+++.... .... .+ .... .... ....+.+.+..
T Consensus 75 ~-gl-~d~~lV~---~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~-~~-------~g~~---~~~~----gG~~~~r~l~~ 134 (614)
T TIGR02061 75 M-GL-VREDLIF---DMARHVDDSVHLFEEWGLPLWIKPEDGKY-VR-------EGRW---QIMI----HGESYKPIVAE 134 (614)
T ss_pred C-CC-CcHHHHH---HHHHHHHHHHHHHHHcCCCceecCCCCcc-cc-------CCCc---ccCc----CchhHHHHHHH
Confidence 1 00 0000000 000111344556666777654311 0000 00 0000 0000 12344555555
Q ss_pred HHHHcCCeEecCceEEEEEeeeccC--CCcEEEE---eCCcc--EEEeCeEEEcCCcChhhh
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDV--RGGVTVV---TSSGE--EFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~l 216 (413)
.+.+.+++++.++.|+++.. +++ +..+.+. ..+|+ .+.|+.||+|||+|+..+
T Consensus 135 ~l~~~~~~i~~~~~v~~Ll~--d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly 194 (614)
T TIGR02061 135 AAKNALGDIFERIFIVKLLL--DKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVY 194 (614)
T ss_pred HHHhCCCeEEcccEEEEEEe--cCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccccc
Confidence 66666789999999999998 631 2233332 23554 689999999999987533
No 179
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.08 E-value=2.4e-09 Score=102.09 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=32.8
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+|||+|||||++|+++|..++++|++|+|+|+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~ 36 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV 36 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc
Confidence 59999999999999999999999999999999643
No 180
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.08 E-value=8.7e-09 Score=96.49 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcC
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAW 212 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~ 212 (413)
..++.+.+.+.+++.|++++++++|+.++. . ++.+.+.+++|+ ++++|.|++|+|-.
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~--~--~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEK--K--DDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEe--c--CCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 467888888899888899999999999988 6 333777776665 68999999999964
No 181
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.08 E-value=1.2e-08 Score=97.00 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=38.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~ 49 (413)
+.+++|||||++||++|++|++. |.+|+|+|+.+..||...+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~ 68 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGA 68 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCc
Confidence 57899999999999999999995 68999999999988776543
No 182
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.07 E-value=1e-09 Score=95.18 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=41.2
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072 2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~ 49 (413)
.+.....+|+|||+|++|+++|+.|+++ ++|+|+|++...||...+.
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence 3445678999999999999999999987 7999999999998877665
No 183
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.07 E-value=1.8e-09 Score=105.55 Aligned_cols=35 Identities=51% Similarity=0.715 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57999999999999999999999999999999998
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.07 E-value=2.6e-09 Score=103.70 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.++.+.+.+.+++.|++++.+++|+++.. . .+.+.+.+.+|+++.+|.||+|+|...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~--~--~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEP--A--AGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 56777788888889999999999999988 6 356777777887899999999999854
No 185
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07 E-value=3.7e-09 Score=101.34 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=35.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+.+|||+|||||++|+.+|..|+++|++|+|||+.+..||
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG 41 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 4469999999999999999999999999999998754443
No 186
>PLN02661 Putative thiazole synthesis
Probab=99.07 E-value=3.5e-09 Score=94.74 Aligned_cols=38 Identities=39% Similarity=0.519 Sum_probs=34.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~ 43 (413)
.++||+|||||++|+++|++|++. |++|+|||+....+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 368999999999999999999986 89999999987664
No 187
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.07 E-value=3e-08 Score=89.56 Aligned_cols=73 Identities=22% Similarity=0.156 Sum_probs=60.0
Q ss_pred cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
+.-|.-.-..+++.+.+.+++.|++|+++++|.+|+. .++ ....+.+++|+++.+|+||+|.|..+..++.++
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~-~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDN-EVLGVKLTKGEEIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCC-ceEEEEccCCcEEecCEEEEccCcchHHHHHHH
Confidence 3335555578899999999999999999999999999 632 346677889988999999999999887777666
No 188
>PLN02676 polyamine oxidase
Probab=99.07 E-value=1.5e-08 Score=97.07 Aligned_cols=45 Identities=38% Similarity=0.448 Sum_probs=39.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~ 49 (413)
...+||+|||||++|+++|++|+++|. +|+|+|+.+..||+..+.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~ 69 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA 69 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence 346899999999999999999999998 699999999888776554
No 189
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.06 E-value=1e-08 Score=98.42 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++.+++|+++.. + ++.+.+.+.++ +++.+|.||+|+|...+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQ--T--DDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 46667777888889999999999999988 6 34566665554 57999999999998654
No 190
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.06 E-value=1.6e-09 Score=96.10 Aligned_cols=169 Identities=21% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHH
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQA 78 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~------g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (413)
...+||+|||||++|+++|.+|.+. .++|+|+||....|+...|+. .+.+. ...+-...|++.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa---viep~--------aldEL~P~wke~ 142 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA---VIEPG--------ALDELLPDWKED 142 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce---eeccc--------hhhhhCcchhhc
Confidence 3569999999999999999999874 469999999988765444322 11110 011111222222
Q ss_pred HHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHH
Q 015072 79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSM 158 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
...+...+.. . .+.+++... +++ ++.. ..+-.....++.-.+++++
T Consensus 143 ~apl~t~vT~--d------------------------~~~fLt~~~---~i~----vPv~-~pm~NhGNYvv~L~~~v~w 188 (621)
T KOG2415|consen 143 GAPLNTPVTS--D------------------------KFKFLTGKG---RIS----VPVP-SPMDNHGNYVVSLGQLVRW 188 (621)
T ss_pred CCcccccccc--c------------------------ceeeeccCc---eee----cCCC-cccccCCcEEEEHHHHHHH
Confidence 1111111000 0 011111110 011 0100 1111122355666889999
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---------------ccEEEeCeEEEcCCcC---hhhhhhhh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---------------GEEFWGKKCVVTAGAW---VGKLVKKI 220 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---------------g~~i~ad~vV~A~G~~---~~~l~~~~ 220 (413)
|-+.+++.|++|+-+..+.++.. ++++....|-|+| |-++.|+.-|+|-|.. +.++++..
T Consensus 189 Lg~kAEe~GvEiyPg~aaSevly--~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf 266 (621)
T KOG2415|consen 189 LGEKAEELGVEIYPGFAASEVLY--DEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKF 266 (621)
T ss_pred HHHHHHhhCceeccccchhheeE--cCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHh
Confidence 99999999999999999999998 6544555555543 2368899999998875 44666655
No 191
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.06 E-value=4.1e-09 Score=100.47 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
++|||+|||||++|+++|..|+++|++|+|||+...+
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~G 37 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLG 37 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccc
Confidence 3699999999999999999999999999999997543
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.05 E-value=6e-09 Score=99.34 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + +..+.+.+ +++++.+|.||+|+|...+
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~--~--~~~v~v~~-~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKN--D--GDQVLVVT-EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--c--CCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence 45566677778889999999999999987 6 34455544 4556999999999997654
No 193
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.05 E-value=4.3e-09 Score=101.20 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
...||++|||||++|+++|..|+++|++|+|||+...+
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G 39 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLG 39 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 45799999999999999999999999999999997443
No 194
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=1.6e-09 Score=102.70 Aligned_cols=48 Identities=40% Similarity=0.452 Sum_probs=42.7
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES 52 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~ 52 (413)
.+..+|+|||||++|++||.+|.+.|++|+|+|+.++.||+..+....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~ 60 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE 60 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC
Confidence 346799999999999999999999999999999999999987765443
No 195
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=1.2e-08 Score=105.08 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=34.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.++||+|||+|.+|+++|+.+++.|.+|+||||....
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~ 48 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR 48 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4689999999999999999999999999999998764
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.02 E-value=6.2e-09 Score=100.95 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.++...+.+.+.+.|++++.+++|+++.. + .+.+.+.+++|+.+.+|++|+|+|...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~--~--~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIET--E--DGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 45666677777888999999999999988 6 345677777787899999999999864
No 197
>PRK14694 putative mercuric reductase; Provisional
Probab=99.02 E-value=1.5e-08 Score=97.33 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|+++++++.|+++.. + ++.+.+.+++++ +.+|.||+|+|...+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDY--N--GREFILETNAGT-LRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEECCCE-EEeCEEEEccCCCCC
Confidence 45677888888899999999999999987 6 344556665554 999999999998765
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.02 E-value=1.1e-08 Score=98.22 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++.+++|+++.. + ++.+.+.+.+| +++.+|.||+|+|...+
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEK--N--DDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 45667777888889999999999999987 6 34566666666 46999999999997654
No 199
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.02 E-value=8.9e-10 Score=106.00 Aligned_cols=192 Identities=21% Similarity=0.202 Sum_probs=102.2
Q ss_pred CCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccchHHHHHHHHHHHHH
Q 015072 3 FSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESSLLWEQAQS 80 (413)
Q Consensus 3 ~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (413)
++..++||+|||||.+||.+|..++++|.+|+|+||....+ ++|....+.+........ ... . -..++.+..+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r--g~t~~a~gG~~a~~~~~~~~~~d-s--~e~~~~dtvk 76 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR--GHTVAAQGGINAALGNTVDVEGD-S--PELHFYDTVK 76 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC--CchhhhcccccccccCcccccCC-C--HHHHHHHHHh
Confidence 34567999999999999999999999999999999998775 333333333322221110 000 0 0011111111
Q ss_pred hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCcc-ccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ-VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF 159 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
.. +.......+... .+...+.+.+++++|.++. ..+..-..+.++. .... . ....+--....++..|
T Consensus 77 g~--d~l~dqd~i~~~---~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg-~~~~---r---t~~~~~~tG~~ll~~L 144 (562)
T COG1053 77 GG--DGLGDQDAVEAF---ADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG-HSKP---R---TCFAADKTGHELLHTL 144 (562)
T ss_pred cc--CCcCCHHHHHHH---HHhhHHHHHHHHHhCCCcccCCCccccccccCC-cCCC---c---ceecCCCCcHHHHHHH
Confidence 11 100000000000 0011233455566666542 2222222223333 1111 0 1111222235678888
Q ss_pred HHHHHH-cCCeEecCceEEEEEeeeccCCC---cEEEEeCCcc--EEEeCeEEEcCCcCh
Q 015072 160 QTLAIK-NGAVLRDNTEVKTVLKVKDDVRG---GVTVVTSSGE--EFWGKKCVVTAGAWV 213 (413)
Q Consensus 160 ~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~---~~~v~~~~g~--~i~ad~vV~A~G~~~ 213 (413)
.+++.+ .+++++.+..++++.. +++.. .+.+...+++ .+.++.||+|||+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 145 YEQLLKFSGIEIFDEYFVLDLLV--DDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHhhcchhhhhhhhhhhee--cCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 888877 5678888999999987 53321 2233345565 677899999999876
No 200
>PLN02507 glutathione reductase
Probab=99.01 E-value=9.4e-09 Score=99.03 Aligned_cols=32 Identities=41% Similarity=0.477 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~ 38 (413)
+||++|||||++|+.+|..|++.|++|+|||+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 201
>PRK14727 putative mercuric reductase; Provisional
Probab=99.01 E-value=1.8e-08 Score=96.88 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+++++ +.+|.||+|+|.+.+
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~--~~~~~v~~~~g~-i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEH--D--DNGFVLTTGHGE-LRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEE--e--CCEEEEEEcCCe-EEeCEEEEccCCCCC
Confidence 35667778888889999999999999987 5 345666666665 999999999999865
No 202
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=1.2e-08 Score=98.21 Aligned_cols=34 Identities=41% Similarity=0.569 Sum_probs=32.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~ 38 (413)
..+||++|||||++|+++|..|++.|++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3469999999999999999999999999999998
No 203
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.00 E-value=1.3e-09 Score=99.46 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=101.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcccc-chHHHHHHHHHHHHHhcCCeeE
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH-PMVLESSLLWEQAQSEIGYKVY 87 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (413)
||+|||+|++||++|+.|.+. ++|+|+-|..... ++|....|.+...+.+.+.. ....+ .+..--++
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~--~sS~~AQGGIAa~~~~~Ds~~~Hv~D------TL~AG~gl--- 76 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE--SSSYWAQGGIAAALSEDDSPELHVAD------TLAAGAGL--- 76 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC--ccchhhcCceEeeeCCCCCHHHHHHH------HHHhcCCC---
Confidence 999999999999999999987 9999999987763 56666666665555443211 11111 11110000
Q ss_pred eeeeeeeeCCCCh----HHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072 88 FKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
...... ..-...++++..+|+++..-....+ ..++.. . ...-+....+ -....+++.|.+.
T Consensus 77 -------cD~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg-H----S~rRIlH~~~--~TG~~I~~~L~~~ 142 (518)
T COG0029 77 -------CDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGG-H----SRRRILHAAD--ATGKEIMTALLKK 142 (518)
T ss_pred -------CcHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecc-c----CCceEEEecC--CccHHHHHHHHHH
Confidence 000000 0113345555666765433321100 001111 0 0001111111 1236788888888
Q ss_pred HHH-cCCeEecCceEEEEEeeeccCCC--cEEEEeCCc--cEEEeCeEEEcCCcChh
Q 015072 163 AIK-NGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSG--EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~-~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g--~~i~ad~vV~A~G~~~~ 214 (413)
+.+ .+++++.++.+.+|.. +++.. ++.+...++ .++.++.||+|||+...
T Consensus 143 v~~~p~I~v~e~~~a~~li~--~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ 197 (518)
T COG0029 143 VRNRPNITVLEGAEALDLII--EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG 197 (518)
T ss_pred HhcCCCcEEEecchhhhhhh--cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence 876 6899999999999988 64311 333333333 36899999999998664
No 204
>PLN02568 polyamine oxidase
Probab=99.00 E-value=1.9e-08 Score=97.17 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=40.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcC-----CcEEEEcccCCCCCCCCCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRG-----QKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g-----~~V~lvE~~~~~~~~~~s~ 49 (413)
|++..||+|||||++|+++|..|++.| ++|+|+|+....||+..+.
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 445689999999999999999999887 8999999999988876554
No 205
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.99 E-value=1.2e-08 Score=82.24 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=33.4
Q ss_pred cCCeEe-cCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072 166 NGAVLR-DNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA 211 (413)
Q Consensus 166 ~gv~i~-~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~ 211 (413)
.|+++. .+.+|++|.. . ++++.+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~--~--~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRR--D--DDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEE--c--CCcEEEEECCCCEEEeCEEEECCCC
Confidence 354443 3679999999 7 4567888899998999999999996
No 206
>PLN02546 glutathione reductase
Probab=98.99 E-value=9.6e-09 Score=99.59 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~ 38 (413)
+|||+|||+|.+|..+|..|+++|++|+|||+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=5.7e-08 Score=93.30 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCc--cEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSG--EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g--~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + +..+.+.. .+| +++.+|.||+|+|...+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDD--N--GSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEE--e--CCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 45667788888889999999999999987 5 33444433 355 36999999999997554
No 208
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.97 E-value=1.2e-07 Score=86.67 Aligned_cols=62 Identities=29% Similarity=0.288 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcChhhhhhhh
Q 015072 151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
.+.++.....+.+++.||++++++.|++++. + . |++++|+ ++.++.+|+|+|..++++.+++
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~--v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----G--VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----c--EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 3578888888999999999999999999988 5 2 4556666 4999999999999999888874
No 209
>PTZ00058 glutathione reductase; Provisional
Probab=98.97 E-value=1.3e-08 Score=98.75 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+||++|||||.+|.++|..+++.|++|+|||++..+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~G 83 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLG 83 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 5799999999999999999999999999999997544
No 210
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.97 E-value=4e-09 Score=95.18 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~ 42 (413)
||+||||+|.+|+.+|.+|++.| .+|+|+|++...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 79999999999999999999997 699999999754
No 211
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.96 E-value=1.5e-08 Score=90.94 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 136 PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+...+++.++.+|. ..+..++.+.+++.|.+|.++..|.+|.. ++ +..+.|+..||+++.++.||-.++.|..
T Consensus 250 d~~~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~-gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILL--DS-GKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred cccCCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheec--cC-CeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 34555666666665 57788899999999999999999999999 74 4678889999999999999999999864
No 212
>PRK13748 putative mercuric reductase; Provisional
Probab=98.95 E-value=4.3e-08 Score=96.62 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|+++++++.|+++.. + ++.+.+.+++++ +.+|.||+|+|...+
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAH--V--DGEFVLTTGHGE-LRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCEEEEEecCCe-EEeCEEEEccCCCcC
Confidence 45667788888899999999999999987 6 345566666664 999999999998654
No 213
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.95 E-value=1.1e-07 Score=88.86 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
..++.+.|.+.+++.|++++.+++|+++.. .++ ....+.+.+++ .+++|.||+|+|.+.+
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~-~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEF--EGG-RVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCC-EEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 356778888889899999999999999988 622 22233344443 5899999999998654
No 214
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.95 E-value=2.1e-08 Score=96.11 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=33.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+|||+|||||++|+++|..++++|++|+|||+....||
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG 40 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence 49999999999999999999999999999997544443
No 215
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.93 E-value=4.8e-08 Score=93.85 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---CccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+. +++++.+|.||+|+|...+
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSV--R--GGGKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEE--c--CCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 34566777888889999999999999987 6 233444332 2347999999999997543
No 216
>PRK02106 choline dehydrogenase; Validated
Probab=98.93 E-value=4.5e-08 Score=96.10 Aligned_cols=38 Identities=32% Similarity=0.430 Sum_probs=34.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDF 41 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE~~~~ 41 (413)
+..++|+||||+|.+|+.+|.+|++ .|++|+|||++..
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4567999999999999999999999 7999999999953
No 217
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.93 E-value=1.7e-09 Score=73.23 Aligned_cols=42 Identities=40% Similarity=0.536 Sum_probs=35.9
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 12 IIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
|||||++|+++|+.|+++|++|+|+|+.+..|+...+....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g 42 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG 42 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence 899999999999999999999999999999887766654433
No 218
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.92 E-value=2.5e-08 Score=86.03 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcC-hhhhhhhhcCCCcce
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAW-VGKLVKKISGLELPI 227 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~-~~~l~~~~~g~~~p~ 227 (413)
-++.+.|...+++.|+.+..+.+|.+.+. .++ ....|.+.+.. .+++|..|+|+|.+ ++.+..+..++.-|+
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~--~~~-~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPI 332 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC--KGG-RVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPI 332 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeee--eCC-eEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcch
Confidence 35567788888999999999999999988 632 33445665554 58899999999986 455655554444444
No 219
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.91 E-value=1e-09 Score=96.29 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072 151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
+-.++++.|++.+.. .++++. +..|+++.+ +++- .+++..++.|+ +..|-.-|+|.|.+++ +.+.+
T Consensus 145 hnGRFvq~lR~ka~slpNV~~e-eGtV~sLle--e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSn-lRrsL 214 (509)
T KOG1298|consen 145 HNGRFVQRLRKKAASLPNVRLE-EGTVKSLLE--EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSN-LRRSL 214 (509)
T ss_pred eccHHHHHHHHHHhcCCCeEEe-eeeHHHHHh--ccCeEEeEEEecCCCceEEEecceEEEecchhHH-HHHHh
Confidence 346889989887755 478887 456888877 5321 34556666666 4566779999999995 55555
No 220
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.91 E-value=1.1e-07 Score=91.84 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+.+.+++.|++++.++.|+++.. . ++.+.+...+|+++.+|.||+|+|...+
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEK--M--DDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 34667778888889999999999999987 5 2345566677778999999999997654
No 221
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.90 E-value=9e-09 Score=99.05 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccC---CCcEEEEeCC-cc--EEEeCeEEEcCCcChhhhhh
Q 015072 151 KPTKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDV---RGGVTVVTSS-GE--EFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~---~~~~~v~~~~-g~--~i~ad~vV~A~G~~~~~l~~ 218 (413)
...++.++|...++..+. .|+++++|+++++ .++ .+.|.|++.+ |+ +-.+|.||+|+|.++.+-.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~--~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER--DPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE--ETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeee--ccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 346788888888887764 6889999999998 532 1468887754 33 45689999999998875544
No 222
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.89 E-value=9e-08 Score=97.02 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=39.6
Q ss_pred ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
++...+.+.|.+.+.+.|++++++++|+++.. . ...+|.||.|+|.++.
T Consensus 94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--~--------------~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA--L--------------AADADLVIASDGLNSR 142 (765)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--h--------------hcCCCEEEEcCCCCHH
Confidence 45678899999999999999999988766543 2 1469999999999875
No 223
>PRK10262 thioredoxin reductase; Provisional
Probab=98.89 E-value=3.8e-08 Score=89.84 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
...+||+|||||++|+++|..|+++|++|+++|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 4578999999999999999999999999999997543
No 224
>PRK09897 hypothetical protein; Provisional
Probab=98.88 E-value=7.8e-08 Score=92.30 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHHHHHHcC--CeEecCceEEEEEeeeccCCCcEEEEeCC-ccEEEeCeEEEcCCcChh
Q 015072 157 SMFQTLAIKNG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSS-GEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~-g~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+.+.| +.++.+++|++|.. . ++++.+.+.+ +..+.+|+||+|+|....
T Consensus 111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~--~--~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 111 LRLVDQARQQKFAVAVYESCQVTDLQI--T--NAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHHHHHHHHcCCeEEEEECCEEEEEEE--e--CCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 33445555666 67888889999988 6 4567787755 457899999999997543
No 225
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.86 E-value=9.4e-08 Score=91.67 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.|++|||+|.+|+.+|..|+++|++|+|||++..+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g 36 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG 36 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 47999999999999999999999999999997654
No 226
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.83 E-value=1.1e-07 Score=92.85 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~ 41 (413)
|+||||+|.+|+.+|.+|++.| .+|+|||++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 69999999863
No 227
>PLN02529 lysine-specific histone demethylase 1
Probab=98.80 E-value=2.2e-07 Score=92.14 Aligned_cols=45 Identities=36% Similarity=0.356 Sum_probs=40.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~ 50 (413)
...||+|||||++|+++|..|+++|++|+|+|+.+..||+..+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~ 203 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK 203 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence 457999999999999999999999999999999998888765543
No 228
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=1.6e-07 Score=90.06 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
+|+|||||++|+++|..|++.|++|+|||++..+|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG 36 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG 36 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 69999999999999999999999999999976543
No 229
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.79 E-value=1.8e-07 Score=93.18 Aligned_cols=45 Identities=38% Similarity=0.373 Sum_probs=40.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~ 50 (413)
...+|+|||||++|+++|+.|+++|++|+|+|+....||+..+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~ 281 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK 281 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc
Confidence 457999999999999999999999999999999998888765543
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.78 E-value=4.2e-07 Score=87.36 Aligned_cols=58 Identities=10% Similarity=-0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+.+++.|+++++++.++++.. . ++.+.++..++ +++.+|.||+|+|...+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQ--I--EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEE--c--CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 45667777888889999999999999987 5 23445544444 36999999999997544
No 231
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.77 E-value=1.1e-07 Score=92.30 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=35.5
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..+..++|+||||+|.+|+++|.+|++.|++|+|+|++.
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 345678999999999999999999998899999999984
No 232
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.76 E-value=1.6e-07 Score=85.40 Aligned_cols=44 Identities=34% Similarity=0.491 Sum_probs=38.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s 48 (413)
....+|+|||||++|+++|.+|.+.|. +|+|+|..++.||+..+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 345689999999999999999998764 99999999999888554
No 233
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.76 E-value=1.3e-07 Score=90.99 Aligned_cols=35 Identities=46% Similarity=0.622 Sum_probs=32.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+|||+|||||++|+++|..|++.|++|+|||++..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 37 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 59999999999999999999999999999999433
No 234
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.75 E-value=2.2e-07 Score=89.13 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEccc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~ 39 (413)
++||++|||||.+|..+|..++++ |++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999974
No 235
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=3.5e-08 Score=91.11 Aligned_cols=154 Identities=23% Similarity=0.231 Sum_probs=91.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC-cceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES-RTIRATYPEDYYHPMVLESSLLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (413)
..|||+|||||-||+-+|+..++.|.+++|+--+...-+. .+++.+ |++...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG-------------------------- 55 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKG-------------------------- 55 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccc--------------------------
Confidence 3599999999999999999999999999999765433211 111110 111000
Q ss_pred eeEeeeeeeeeCCCChHHHH-HHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072 85 KVYFKAHQFDMGPSENKSLR-SVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.+. .+.+.+. .........++.++.++... +......-...|-..|.+.+.+.+
T Consensus 56 -------~lv---rEIDALGG~Mg~~~D~~~IQ~r~LN~sK---------------GPAVra~RaQaDk~~Y~~~mk~~l 110 (621)
T COG0445 56 -------HLV---REIDALGGLMGKAADKAGIQFRMLNSSK---------------GPAVRAPRAQADKWLYRRAMKNEL 110 (621)
T ss_pred -------eeE---EeehhccchHHHhhhhcCCchhhccCCC---------------cchhcchhhhhhHHHHHHHHHHHH
Confidence 000 0000000 01111222334334443211 111111224455567778888777
Q ss_pred HHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 164 IKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
++. +..++ ...|+++.. +++...+.|.+.+|..+.|+.||++||.+.+
T Consensus 111 e~~~NL~l~-q~~v~dli~--e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 111 ENQPNLHLL-QGEVEDLIV--EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred hcCCCceeh-HhhhHHHhh--cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 654 67776 678999888 6433468889999999999999999998755
No 236
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.74 E-value=2.4e-07 Score=65.36 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.++|||||+.|+-+|..|++.|.+|+|+++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999997654
No 237
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.72 E-value=1.3e-07 Score=81.50 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
.|+|||+|++|++++..+...|-.|+|+|+....||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 599999999999999999999878999999876654
No 238
>PLN03000 amine oxidase
Probab=98.71 E-value=2.3e-07 Score=92.54 Aligned_cols=45 Identities=33% Similarity=0.347 Sum_probs=40.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~ 50 (413)
...+|+|||||++|+.+|+.|++.|++|+|+|+.+..||+..+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~ 227 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK 227 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence 358999999999999999999999999999999999988876654
No 239
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.70 E-value=4.9e-07 Score=79.82 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCc
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGA 211 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~ 211 (413)
.++.+.+.+.+++.|++++++++|..... +++ +.+.++.. ++ ++++||.+.+|+|-
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~--~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATR--NGD-GPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeec--cCC-CceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 46778888889999999999999999999 743 35555432 23 37999999999994
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=98.66 E-value=1.9e-06 Score=82.29 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+.+. .+.+++++++++|++++. + ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQ--D--GSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEE--c--CCEEEEEECCCcEeecCEEEEEECCccC
Confidence 444444443 456899999999999987 6 3456677777878999999999998654
No 241
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.65 E-value=2.4e-07 Score=78.46 Aligned_cols=32 Identities=44% Similarity=0.729 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
||+|||||++|+++|..|++.+++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 69999999999999999999999999998754
No 242
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.63 E-value=5.7e-07 Score=88.64 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|||+|||+|.+|..+|..++++|++|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999999999999975
No 243
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=75.97 Aligned_cols=36 Identities=47% Similarity=0.606 Sum_probs=33.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.++||+|||+|++|+.+|.+|+.+|++|+|+|+...
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 468999999999999999999999999999998754
No 244
>PLN02785 Protein HOTHEAD
Probab=98.60 E-value=1e-06 Score=86.20 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+||+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999999 689999999863
No 245
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.58 E-value=1.7e-07 Score=96.19 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
...+|+|||||+||+++|++|+++|++|+|+|+.+..|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 35799999999999999999999999999999987654
No 246
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=8.2e-08 Score=88.90 Aligned_cols=44 Identities=39% Similarity=0.502 Sum_probs=40.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES 52 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~ 52 (413)
+|+|+|||+|||++|++|+++|++|+|+|+++..||..+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~ 45 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS 45 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC
Confidence 59999999999999999999999999999999999988876553
No 247
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.58 E-value=4.5e-07 Score=86.80 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~ 42 (413)
+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999999875 589999997653
No 248
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.55 E-value=3.8e-06 Score=80.01 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK 219 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~ 219 (413)
.++.+.+.+.+++.|++++++++|+++.. . .+.+++|+++.+|.||+|+|...+ .++..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~------~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~ 248 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N------EVTFKSGKVEHYDMIIEGVGTHPNSKFIES 248 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C------EEEECCCCEEEeCEEEECcCCCcChHHHHh
Confidence 45667778888889999999999999865 3 244566777999999999998654 44443
No 249
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.54 E-value=1.8e-06 Score=80.73 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI 220 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~ 220 (413)
.+.+.+++.|++++++++|+++.. + .+.+.+.+.+|+++.+|.||+|+|...+ .+++..
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEK--T--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEc--c--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence 344566778999999999999988 6 3456677788888999999999998765 454443
No 250
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.53 E-value=4.4e-07 Score=86.02 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..+.+|||||||.+|+.+|..|.+.+.+|+|||+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 3467999999999999999999877789999998653
No 251
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.53 E-value=1e-06 Score=91.81 Aligned_cols=37 Identities=35% Similarity=0.507 Sum_probs=34.4
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
.+||+|||||++|+++|+.|++.|++|+|+|+++..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G 199 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG 199 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999987654
No 252
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.52 E-value=2.1e-06 Score=80.75 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh-hhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK-LVKK 219 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~-l~~~ 219 (413)
.+.+.+++.|++++++++|+++.. + +.+.+.+.+|+++.+|.||+|+|...+. ++..
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~--~---~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~ 248 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVD--G---EKVELTLQSGETLQADVVIYGIGISANDQLARE 248 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEc--C---CEEEEEECCCCEEECCEEEECCCCChhhHHHHh
Confidence 344566778999999999999876 4 3456777888889999999999987653 4443
No 253
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.52 E-value=6.4e-07 Score=91.06 Aligned_cols=38 Identities=34% Similarity=0.449 Sum_probs=34.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
...+|+|||||++|+++|+.|+++|++|+|+|+.+..|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 35789999999999999999999999999999987654
No 254
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.50 E-value=9.1e-06 Score=77.72 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
..+...+.+. .+.++++++++.|+++.. + ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 210 ~~~~~~l~~~-~~~gI~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 210 EDISDRFTEI-AKKKWDIRLGRNVTAVEQ--D--GDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHHH-HhcCCEEEeCCEEEEEEE--c--CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 3444555443 346899999999999987 6 3456676677778999999999997654
No 255
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.49 E-value=3e-07 Score=84.46 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=39.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
+||+|||||++|+++|++|++.|.+|+|+|+++..||.+.+....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g 47 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDET 47 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCC
Confidence 6999999999999999999999999999999887776655443333
No 256
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.48 E-value=1.1e-06 Score=82.72 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.|++++.++.|+.+.. + .. .+.+.+|+++.+|++|+|||+...
T Consensus 69 ~~~~i~~~~g~~V~~id~--~--~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGR--D--TR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred HHCCCEEEcCCEEEEEEC--C--CC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 457899999999999988 5 22 355567778999999999998653
No 257
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.46 E-value=6.8e-07 Score=83.22 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.+.+.+.|++++. .+|++|.. + ++ .|.+.+|+++++|++|+|+|+..
T Consensus 61 ~~~~~~~gv~~~~-~~v~~id~--~--~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 61 RRLARQAGARFVI-AEATGIDP--D--RR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHhcCCEEEE-EEEEEEec--c--cC--EEEECCCCcccccEEEEccCCCC
Confidence 3455567999875 58999988 5 23 46667787799999999999754
No 258
>PLN02976 amine oxidase
Probab=98.44 E-value=9.6e-06 Score=84.29 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=38.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s 48 (413)
..++|+|||||++|+++|+.|++.|++|+|+|+.+..||+..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 4589999999999999999999999999999998888776544
No 259
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=2.3e-06 Score=79.94 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
+.+.+.|++++.+++|+++.. + +. .+.+ +++++.+|++|+|||+..
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~--~--~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA--E--AQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC--C--CC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 344567999999999999988 5 23 3444 455699999999999754
No 260
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.40 E-value=0.00013 Score=69.38 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE-eCCccEEEeCeEEEcCCcCh
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~vV~A~G~~~ 213 (413)
+.|.+.+++.|++|+++++|++|.. ++ +++.+. +.+|+++.||.||+|+....
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~--~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEA--NA--GGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEE--cC--CcceEEEecCCccccCCEEEEcCCHHH
Confidence 4467777778999999999999998 73 344332 23566799999999988654
No 261
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.39 E-value=1.7e-05 Score=76.04 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=35.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
..++|+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCc
Confidence 457999999999999999999999999999999876543
No 262
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.6e-07 Score=76.99 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~ 53 (413)
..+||.+|||||.+|+++|.+.+..|.+|.++|--.+. ..+.+++.+|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt-P~GtsWGlGG 64 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT-PQGTSWGLGG 64 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC-CCCCccccCc
Confidence 35799999999999999999999999999999954332 1345554433
No 263
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.37 E-value=1e-06 Score=89.60 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
..++|+|||||++|+++|+.|+++|++|+|+|+.+..|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45799999999999999999999999999999865543
No 264
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.7e-06 Score=74.84 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=38.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~ 50 (413)
+|++|||+|++|+.+|..|++.|++|+||||.+..||-+-+..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~ 44 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA 44 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccccc
Confidence 7999999999999999999999999999999998877655433
No 265
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.34 E-value=1.3e-05 Score=76.30 Aligned_cols=38 Identities=34% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~ 42 (413)
..+||.||||||.+|+.+|..|++. .++|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3579999999999999999999996 6899999998644
No 266
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.1e-06 Score=68.56 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l 216 (413)
..++..|+++..+.|.+|+. ..|.++.. . ...+.+.++.+. +.+|.||+|+|+-+.++
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~t-EtVskv~~--s--skpF~l~td~~~-v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIIT-ETVSKVDL--S--SKPFKLWTDARP-VTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhcceeee-eehhhccc--c--CCCeEEEecCCc-eeeeeEEEecccceeee
Confidence 57888899999999999985 45888888 6 577888886665 99999999999987654
No 267
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=6.6e-06 Score=71.92 Aligned_cols=56 Identities=21% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072 154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW 212 (413)
Q Consensus 154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~ 212 (413)
.+...+.+.++..|++++.++.++++.+ .+. +...+.++.+....+|.+++|+|-.
T Consensus 231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K--~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 231 MISDLVTEHLEGRGINVHKNSSVTKVIK--TDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHHHHHHHhhhcceeecccccceeeee--cCC-CceEEEEeccccccccEEEEEecCC
Confidence 3445566778889999999999999998 632 4455556667655699999999964
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.32 E-value=2.3e-06 Score=87.08 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.+.+.|++++.+++|++|.. . . ..|.+.+|+++.+|++|+|||...
T Consensus 63 ~~~~~gv~~~~g~~V~~Id~--~--~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 63 WYEKHGITLYTGETVIQIDT--D--Q--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHCCCEEEcCCeEEEEEC--C--C--CEEEECCCcEeeCCEEEECCCCCc
Confidence 34567999999999999988 5 2 246677887899999999999754
No 269
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.29 E-value=1.2e-05 Score=76.77 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~ 214 (413)
..+.+.+++.|++++.++.|+++.. +++ +.+.+..+++ +++.+|.||+|+|...+
T Consensus 211 ~~~~~~l~~~gI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 211 ETITEEYEKEGINVHKLSKPVKVEK--TVE-GKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEE--eCC-ceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 3445566778999999999999987 522 2355666667 46999999999997654
No 270
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.29 E-value=4.7e-06 Score=84.98 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
.+.+.|++++.++.|++|.. . . ..|.+.+|+++.+|++|+|||...
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~--~--~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINR--Q--E--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeC--C--C--cEEEECCCcEEECCEEEECCCCCc
Confidence 34557999999999999987 5 2 245667787899999999999754
No 271
>PLN02507 glutathione reductase
Probab=98.29 E-value=1.2e-05 Score=77.68 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+++.|++++.++.|+++.. . ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 249 ~l~~~l~~~GI~i~~~~~V~~i~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 249 VVARNLEGRGINLHPRTNLTQLTK--T--EGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEE--e--CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 344556778999999999999987 5 3456677777778999999999997654
No 272
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=1.5e-05 Score=73.40 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFLH 43 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~---g~~V~lvE~~~~~~ 43 (413)
++|+|||+|.+|+.+|.+|.+. ..+|.|+|+.+..|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 6899999999999999999986 22499999987664
No 273
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.27 E-value=1.4e-05 Score=81.62 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK 219 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~ 219 (413)
..+.+.+++.|+++++++.|++|.. ++......+.+.+|+++.+|.||+|+|...+ .++..
T Consensus 191 ~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 191 EQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred HHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 3455667788999999999999976 5322345677788889999999999998765 34443
No 274
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.27 E-value=1.6e-05 Score=76.08 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072 156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI 220 (413)
Q Consensus 156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~ 220 (413)
.+.+.+.+++.|++++.+++|+++.. + +....+.++++ ++.+|.||+|+|...+ .+++..
T Consensus 194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~ 254 (444)
T PRK09564 194 TDVMEEELRENGVELHLNEFVKSLIG--E--DKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDT 254 (444)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEec--C--CcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhc
Confidence 34455667788999999999999976 5 23344555555 5999999999998754 455543
No 275
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.27 E-value=1.4e-05 Score=76.39 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=41.1
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.+.+.+.|++++.++.|+++.. . ++.+.+.+.+++++.+|.||+|+|...+
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITK--T--DDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEE--c--CCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 44556678999999999999987 5 3446666667778999999999997644
No 276
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.26 E-value=1.9e-05 Score=75.25 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI 220 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~ 220 (413)
.+.+.+++.|++++.++.|+++.. + +.+ +...+|+++.+|.||+|+|...+ .++..+
T Consensus 184 ~~~~~l~~~gV~v~~~~~v~~i~~--~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (427)
T TIGR03385 184 IVEEELKKHEINLRLNEEVDSIEG--E---ERV-KVFTSGGVYQADMVILATGIKPNSELAKDS 241 (427)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEec--C---CCE-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence 344556778999999999999977 5 223 44556778999999999998754 455543
No 277
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=2.5e-05 Score=74.93 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+++.|++++++++|+++.. + +..+.+...++ +++.+|.||+|+|...+
T Consensus 216 ~l~~~L~~~GI~i~~~~~V~~i~~--~--~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 216 ILREKLENDGVKIFTGAALKGLNS--Y--KKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEE--c--CCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 344566778999999999999987 5 33444543322 26999999999997654
No 278
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=3.2e-06 Score=76.87 Aligned_cols=35 Identities=40% Similarity=0.600 Sum_probs=32.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|||+|||||-||+-+|...++.|.+.+|+..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 46899999999999999999999999999998664
No 279
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.24 E-value=2e-05 Score=75.75 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+++.|++++++++|+++.. + ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 223 ~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 223 VLEEVFARRGMTVLKRSRAESVER--T--GDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHCCcEEEcCCEEEEEEE--e--CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 344566778999999999999987 5 3456676677888999999999998655
No 280
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.24 E-value=1.6e-05 Score=81.11 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK 219 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~ 219 (413)
.+.+.+++.|+++++++.|+++.. + +....+.+++|+++.+|.||+|+|...+ .++..
T Consensus 187 ~l~~~l~~~GV~v~~~~~v~~i~~--~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~ 245 (785)
T TIGR02374 187 LLQRELEQKGLTFLLEKDTVEIVG--A--TKADRIRFKDGSSLEADLIVMAAGIRPNDELAVS 245 (785)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEc--C--CceEEEEECCCCEEEcCEEEECCCCCcCcHHHHh
Confidence 344566778999999999999977 5 3445677788888999999999998654 34443
No 281
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=2e-05 Score=76.00 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5899999999999999999999999999998643
No 282
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.20 E-value=1.4e-05 Score=76.23 Aligned_cols=51 Identities=29% Similarity=0.362 Sum_probs=40.3
Q ss_pred HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
+...+...|.+|+++++|++|+. + ++.+.+.+.+|+++.||+||+|+....
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~--~--~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIER--E--DGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEE--E--SSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred HHHHHhhcCceeecCCcceeccc--c--ccccccccccceEEecceeeecCchhh
Confidence 33444455779999999999999 7 578889999998899999999998754
No 283
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.8e-06 Score=72.74 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCccEEEeCeEEEcCCcC
Q 015072 153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGEEFWGKKCVVTAGAW 212 (413)
Q Consensus 153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~~i~ad~vV~A~G~~ 212 (413)
.++...|.+..+++.+++..-.+++++++ .... +-..|++.+|-.++++.||++||+.
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~--a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEP--AAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhccee--cCCCCccEEEEecCCceeccceEEEecCcc
Confidence 56777888888888999988888888888 5332 4678889999999999999999984
No 284
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.18 E-value=3.1e-05 Score=73.55 Aligned_cols=56 Identities=30% Similarity=0.287 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~ 220 (413)
+.+.+.+++.|++++++++|+++.. + .+.+++|+++.+|.||+|+|...+.+...+
T Consensus 232 ~~~~~~L~~~gV~v~~~~~v~~v~~--~------~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~ 287 (424)
T PTZ00318 232 KYGQRRLRRLGVDIRTKTAVKEVLD--K------EVVLKDGEVIPTGLVVWSTGVGPGPLTKQL 287 (424)
T ss_pred HHHHHHHHHCCCEEEeCCeEEEEeC--C------EEEECCCCEEEccEEEEccCCCCcchhhhc
Confidence 3445667789999999999998876 4 245678888999999999998766665554
No 285
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.17 E-value=3.2e-05 Score=70.94 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh----------hhhhh
Q 015072 151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG----------KLVKK 219 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~----------~l~~~ 219 (413)
.+..++..|...+++.||+|+++++|++| . + +.+.+.+.++ ..++||+||+|||..+- .+++.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~---~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~ 157 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--G---GTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQ 157 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--C---CcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHH
Confidence 35789999999999999999999999999 4 3 2466766433 36999999999998652 45566
Q ss_pred hcCCC-cceeEEEEE
Q 015072 220 ISGLE-LPIQAVETS 233 (413)
Q Consensus 220 ~~g~~-~p~~~~~~~ 233 (413)
+ |.. +|..|.-..
T Consensus 158 l-Gh~i~~~~PaL~p 171 (376)
T TIGR03862 158 R-GVSVAPFAPANCG 171 (376)
T ss_pred C-CCcccCCcCeece
Confidence 6 543 455554443
No 286
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=4.1e-05 Score=73.59 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=31.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..+++|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 36799999999999999999999999999998543
No 287
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.13 E-value=4.3e-05 Score=73.51 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.+.+.+++.|+++++++.|+++.. .++ +...+.+.+++++.+|.||+|+|...+
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTL--NAD-GSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEE--cCC-ceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 4455667778999999999999987 522 335566666778999999999997644
No 288
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=4.8e-05 Score=73.37 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.+|+|||+|..|+.+|..|++.|.+|+|+++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 589999999999999999999999999999864
No 289
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.09 E-value=4.1e-06 Score=76.44 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=37.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS 47 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~ 47 (413)
..+++|||||++|+++|+.|++.|++|.||||.+..||+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 46899999999999999999999999999999998887643
No 290
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.08 E-value=4.3e-06 Score=77.15 Aligned_cols=35 Identities=49% Similarity=0.554 Sum_probs=32.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 68999999999999999999999999999987654
No 291
>PTZ00058 glutathione reductase; Provisional
Probab=98.06 E-value=7e-05 Score=73.02 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=31.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..+++|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4579999999999999999999999999999864
No 292
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=8.6e-05 Score=72.99 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~ 214 (413)
...++..|.+.+.+.|++++.++.++++.. ++++..+.+. ..+|+ .+.|+.||+|||++..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVK--NQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEE--cCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 467888898888888999999999999987 5323333332 34565 6889999999999875
No 293
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.02 E-value=6.5e-06 Score=84.29 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=35.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~ 45 (413)
.++|+|||||++|+++|+.|+++|++|+|+|+.+..||.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence 479999999999999999999999999999998776543
No 294
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.01 E-value=0.00032 Score=65.38 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=36.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~ 50 (413)
..++=|||+|+++|++|.+|-+. |.+|+|+|+.+..||...+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 35688999999999999999985 679999999998876544433
No 295
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.01 E-value=2.8e-05 Score=71.01 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=27.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~ 41 (413)
.+|+++||.|++++++|..|.+.+ .++..+|+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999986 89999998764
No 296
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=0.00011 Score=70.73 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||||..|+-+|..|++.|.+|+|||+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5799999999999999999999999999998653
No 297
>PRK12831 putative oxidoreductase; Provisional
Probab=97.96 E-value=1.1e-05 Score=77.19 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=35.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+.+||+|||||++|+++|+.|+++|++|+|+|+.+..||
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG 177 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 468999999999999999999999999999999776543
No 298
>PLN02546 glutathione reductase
Probab=97.91 E-value=0.00018 Score=70.20 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.+.+.+++.|+++++++.|+++.. .+ ++.+.+.+.+++...+|.||+|+|...+
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~--~~-~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIK--SA-DGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEE--cC-CCEEEEEECCeEEEecCEEEEeeccccC
Confidence 445566778999999999999986 52 2345566666654558999999998655
No 299
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.90 E-value=0.00017 Score=71.48 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||||..|+-.|..|++.|.+|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4799999999999999999999999999998654
No 300
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.90 E-value=0.00067 Score=61.21 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHcCCeEecCceEEEEEee----eccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072 164 IKNGAVLRDNTEVKTVLKV----KDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP 226 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~----~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p 226 (413)
+..++++...++|.++..- +.++..-..+.+.+|..+..|.+|-|.|..+. .++.+++..+
T Consensus 164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~--vR~~snid~~ 228 (481)
T KOG3855|consen 164 ESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSV--VRKASNIDVA 228 (481)
T ss_pred hcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccch--hhhhcCCCcc
Confidence 3457999988888877650 01112345567788989999999999997653 4445455444
No 301
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.90 E-value=2.9e-05 Score=70.04 Aligned_cols=43 Identities=37% Similarity=0.411 Sum_probs=37.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCc--EEEEcccCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQK--TLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~--V~lvE~~~~~~~~~~s 48 (413)
..++|+|+|||++|+++||+|++++-+ |+|+|+.++.||...|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 457899999999999999999999654 5669999999887766
No 302
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.89 E-value=0.00037 Score=65.16 Aligned_cols=45 Identities=31% Similarity=0.529 Sum_probs=33.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s 48 (413)
|..+|||+|+|.|+.-+.+|-.|++.|++|+.+|+++.-|+..++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 456899999999999999999999999999999999988765544
No 303
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.87 E-value=1.6e-05 Score=73.95 Aligned_cols=35 Identities=40% Similarity=0.501 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
+||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 47999999999999999999999999999987654
No 304
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.86 E-value=2.4e-05 Score=74.75 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=35.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
..++|+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG 170 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457999999999999999999999999999999876543
No 305
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.84 E-value=0.00016 Score=66.41 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 155 AVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 155 ~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
+.+.+.+.++++|++++.++.+.++.. +.++....|.+.+|+++.||.||+++|+...
T Consensus 257 i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 257 IGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 344566778889999999999999998 6444667788899999999999999998654
No 306
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.84 E-value=0.00018 Score=68.20 Aligned_cols=104 Identities=33% Similarity=0.315 Sum_probs=77.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY 87 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (413)
.+++|||+|.+|+.+|..|+++|++|+++|+.+..++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 6899999999999999999999999999999876531000
Q ss_pred eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG 167 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 167 (413)
. ..+...+.+.+++.|
T Consensus 177 ---------------------------------~-------------------------------~~~~~~~~~~l~~~g 192 (415)
T COG0446 177 ---------------------------------D-------------------------------PEVAEELAELLEKYG 192 (415)
T ss_pred ---------------------------------h-------------------------------HHHHHHHHHHHHHCC
Confidence 0 012234456677789
Q ss_pred CeEecCceEEEEEeeeccCCCcEE--EEeCCccEEEeCeEEEcCCcChhhhhh
Q 015072 168 AVLRDNTEVKTVLKVKDDVRGGVT--VVTSSGEEFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 168 v~i~~~~~V~~i~~~~~~~~~~~~--v~~~~g~~i~ad~vV~A~G~~~~~l~~ 218 (413)
++++.++.+.++.. .++ .... +...+++.+++|.+++++|...+..+.
T Consensus 193 i~~~~~~~~~~i~~--~~~-~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~ 242 (415)
T COG0446 193 VELLLGTKVVGVEG--KGN-TLVVERVVGIDGEEIKADLVIIGPGERPNVVLA 242 (415)
T ss_pred cEEEeCCceEEEEc--ccC-cceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence 99999999999988 521 1111 456677779999999999987753333
No 307
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=0.0003 Score=67.73 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35799999999999999999999999999998643
No 308
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.83 E-value=2.5e-05 Score=74.44 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=35.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~--~g~~V~lvE~~~~~~~~ 45 (413)
...+|+|||||++|+.+|+.|++ .|++|+|+|+.+.++|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 35789999999999999999997 69999999999877643
No 309
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.75 E-value=4.2e-05 Score=73.61 Aligned_cols=39 Identities=38% Similarity=0.467 Sum_probs=35.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
..++|+|||||++|+++|..|+++|++|+|+|+.+..++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG 180 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 347999999999999999999999999999999876653
No 310
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.74 E-value=3.8e-05 Score=77.01 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
...+|+|||||++|+++|+.|++.|++|+|+|+.+..||
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 357999999999999999999999999999999876654
No 311
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.73 E-value=3.5e-05 Score=80.23 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+..+|+|||||++|+++|+.|+++|++|+|+|+.+..|+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence 357999999999999999999999999999999877654
No 312
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.70 E-value=5e-05 Score=76.81 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=32.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
...+|+|||||++|+++|++|+++|++|+|+|+.+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 457899999999999999999999999999998643
No 313
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.70 E-value=0.00065 Score=62.15 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
....|+|||||.++.-++..|.+++. +|+++-++.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 35789999999999999999999864 899998764
No 314
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.67 E-value=5.5e-05 Score=72.90 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
|||+|||+|++|+++|+.|+++|++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999987664
No 315
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.65 E-value=0.001 Score=62.01 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKK 219 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~ 219 (413)
.+.+.+++.|++++.+++|+++.. + .+.+.+|+++.+|.||+|+|...+.++..
T Consensus 196 ~~~~~l~~~gV~v~~~~~v~~i~~--~------~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 249 (364)
T TIGR03169 196 LVLRLLARRGIEVHEGAPVTRGPD--G------ALILADGRTLPADAILWATGARAPPWLAE 249 (364)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEcC--C------eEEeCCCCEEecCEEEEccCCChhhHHHH
Confidence 344566778999999999998855 2 35566787899999999999877655544
No 316
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.64 E-value=8.6e-05 Score=68.69 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
...+|+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg 55 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 457999999999999999999999999999999877653
No 317
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.64 E-value=0.00017 Score=72.10 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=35.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
...+|+|||+|++|+++|+.|+++|++|+|+|+.+..++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 357899999999999999999999999999999887654
No 318
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.63 E-value=7.1e-05 Score=74.83 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=34.8
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
.++|+|||||++|+++|+.|++.|++|+|+|+.+..||
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 47899999999999999999999999999999877654
No 319
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.59 E-value=9.6e-05 Score=70.92 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=35.3
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+..+|+|||+|++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 457899999999999999999999999999999877654
No 320
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.59 E-value=0.0001 Score=69.42 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=34.0
Q ss_pred CccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~~~~~~ 45 (413)
...|+|||||++|+.+|.+|+ +.|++|+|+|+.+.++|.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 468999999999999999765 569999999999988643
No 321
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.57 E-value=0.007 Score=55.17 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=67.6
Q ss_pred HHHHHhcCCcccCCCCeEEEEecCCeeec--HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--
Q 015072 123 RQVLQKYSGRIEIPENWVGVTTELGGVIK--PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-- 198 (413)
Q Consensus 123 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-- 198 (413)
+++.+.+|. +. ......+....+..++ ..++.....+.+.+.|+++..++.|.++.. . ...+.+.+|+
T Consensus 243 ~Dl~k~yp~-l~-~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~----~I~~~~~~g~~~ 314 (491)
T KOG2495|consen 243 EDLRKIYPE-LK-KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--K----TIHAKTKDGEIE 314 (491)
T ss_pred HHHHHhhhc-ch-hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--c----EEEEEcCCCcee
Confidence 355666666 22 2233344444444443 356677777778888999999999999877 4 4556666666
Q ss_pred EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEE
Q 015072 199 EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETS 233 (413)
Q Consensus 199 ~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~ 233 (413)
+|.+-.+|+|||....++.+.+ ...++-...|+-
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~l-m~~i~e~~rr~L 348 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDL-MKQIDEQGRRGL 348 (491)
T ss_pred eecceEEEecCCCCCchhhhhH-hhcCCccCceee
Confidence 7888999999999988887777 444444433343
No 322
>PRK10262 thioredoxin reductase; Provisional
Probab=97.50 E-value=0.0011 Score=60.55 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.+++|||+|..|+-+|..|++.+.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 579999999999999999999999999998853
No 323
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.47 E-value=0.00017 Score=69.57 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=34.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~ 43 (413)
..+|+|||||++|+++|..|+++|++|+|+|+.+..+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG 179 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 4799999999999999999999999999999987654
No 324
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.46 E-value=0.0011 Score=63.46 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|+|||||..|+-+|..|.+.|.+|+|+++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 57999999999999999999999999999875
No 325
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.43 E-value=0.004 Score=61.38 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChhh
Q 015072 152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~ 215 (413)
...++..|.+.+.+.|++|+.++.|++|.. +++ ..+.+. ..+|+ .+.|+.||+|||++...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLM--EDG-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEe--eCC-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 356888898988889999999999999998 632 333332 34565 68999999999998753
No 326
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=0.0011 Score=64.57 Aligned_cols=32 Identities=38% Similarity=0.365 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 58999999999999999999999999999864
No 327
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.42 E-value=0.0013 Score=59.25 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 57999999999999999999999999999874
No 328
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.38 E-value=4.7e-05 Score=61.95 Aligned_cols=38 Identities=39% Similarity=0.459 Sum_probs=33.2
Q ss_pred CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~ 44 (413)
+.||+|||+|.+|+++||.++++ ..+|.|||..-.+||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 46999999999999999999965 689999999866653
No 329
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.36 E-value=0.00026 Score=69.88 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=35.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
...+|+|||+|++|+++|+.|+++|++|+|+|+.+..|+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG 174 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 346899999999999999999999999999999877654
No 330
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.32 E-value=0.0014 Score=60.63 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~ 39 (413)
..++|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4799999999999999999999987 9999874
No 331
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00038 Score=62.05 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR 45 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~ 45 (413)
..+..|+|||+|+||+.+|.+|.++ +.+|.|+|+.+.+.|.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence 3456999999999999999999995 6899999999988653
No 332
>PRK13984 putative oxidoreductase; Provisional
Probab=97.25 E-value=0.00043 Score=68.98 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=35.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
+..+|+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 457899999999999999999999999999999876643
No 333
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.21 E-value=0.0037 Score=56.64 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~ 42 (413)
|+..+|++.||-|+.-+++|..|.+.+ .++..+|+.+.-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 556799999999999999999999975 789999997643
No 334
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.21 E-value=0.0057 Score=53.47 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.0
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFD 40 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~ 40 (413)
.+++.|+|||||.+|++.|..+.++ |. +|.|||..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3578999999999999999999886 43 899999764
No 335
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.20 E-value=0.00036 Score=65.94 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=35.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
..+|+|||+|++|+++|..|++.|++|+++|+.+..+|
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 36899999999999999999999999999999887754
No 336
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.07 E-value=0.0023 Score=62.26 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072 158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK 219 (413)
Q Consensus 158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~ 219 (413)
.|.+.+.+.|+++++++..+++.. . .....++.+||+.+.||.||+|+|..-+ .+...
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~--~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~ 250 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--E--DKVEGVRFADGTEIPADLVVMAVGIRPNDELAKE 250 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--C--cceeeEeecCCCcccceeEEEecccccccHhHHh
Confidence 355667788999999888888876 5 4677889999999999999999998654 44443
No 337
>PRK12831 putative oxidoreductase; Provisional
Probab=97.06 E-value=0.0066 Score=58.32 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|+|||||.+|+-+|..|.+.|.+|+|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 58999999999999999999999999999874
No 338
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00094 Score=58.44 Aligned_cols=35 Identities=43% Similarity=0.600 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
..|.|||||++|.-+||+++++|..|.|.|..+.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56999999999999999999999999999987654
No 339
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.90 E-value=0.0072 Score=59.05 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.+|+|||||.+|+-+|..|+..+.+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 589999999999999999999999999998653
No 340
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.077 Score=48.20 Aligned_cols=44 Identities=30% Similarity=0.514 Sum_probs=39.2
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s 48 (413)
..+|||+|+|-|+.=+.++..|+..|.+|+.+|+++.-|+..+|
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sas 45 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESAS 45 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccc
Confidence 44699999999999999999999999999999999988765554
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.66 E-value=0.0023 Score=52.80 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.|.|||+|..|...|..++..|++|+|+|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999864
No 342
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.63 E-value=0.024 Score=59.79 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSGEEFWGKKCVVTAGAWVG-KLVKKI 220 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~~i~ad~vV~A~G~~~~-~l~~~~ 220 (413)
.+++.|++++.++.|+++.. ++.-..+.+.. .+++++.+|.|+++.|...+ .+...+
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~l 419 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQR 419 (985)
T ss_pred HHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhc
Confidence 34567899999999999877 52112344442 24557999999999997654 454444
No 343
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.52 E-value=0.025 Score=58.01 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~ 39 (413)
.+|+|||||.+|+-+|..|.+.|.+ |+|+++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 5799999999999999999999987 9999875
No 344
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.48 E-value=0.0036 Score=50.38 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998863
No 345
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.48 E-value=0.0045 Score=55.86 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
|+..+.-..|.|||+|..|...|..++.+|++|+++|..+
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4433333569999999999999999999999999999864
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0032 Score=63.85 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=35.2
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~ 44 (413)
-..|+|||.|++|+.+|-.|-+.|+.|+|+|+.++.||
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 36899999999999999999999999999999988754
No 347
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.44 E-value=0.031 Score=53.98 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~ 39 (413)
..|+|||||..|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 579999999999999999988886 78877654
No 348
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.41 E-value=0.0034 Score=51.93 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 49999999999999999999999999999865
No 349
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.30 E-value=0.0064 Score=48.63 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
|+|+|+|..|+..|++|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 350
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.30 E-value=0.031 Score=53.81 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~ 40 (413)
..++|||+|..|+-+|..+.+.|. +|+||++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 579999999999999999999985 799998753
No 351
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0057 Score=52.41 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+++|||+|-.|.++|..|.+.|++|++||+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 599999999999999999999999999998754
No 352
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.19 E-value=0.0069 Score=54.06 Aligned_cols=34 Identities=38% Similarity=0.422 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998643
No 353
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.15 E-value=0.022 Score=52.84 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=37.6
Q ss_pred HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072 162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA 211 (413)
Q Consensus 162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~ 211 (413)
..++.|+++++++.|+.+.. . .-++.+.+|+.++++++|+|||.
T Consensus 136 ~Yke~gIe~~~~t~v~~~D~--~----~K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 136 FYKEKGIELILGTSVVKADL--A----SKTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hHhhcCceEEEcceeEEeec--c----ccEEEeCCCceeecceEEEeecC
Confidence 34568999999999999988 5 23577889999999999999998
No 354
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.042 Score=55.38 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~ 39 (413)
.+|+|||||..|+-+|..+.+.|. +|+++.+.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 479999999999999999999986 69998875
No 355
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.07 E-value=0.0097 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
++.|+|||+|..|...|..|++.|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999998854
No 356
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.0075 Score=54.63 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 59999999999999999999999999999864
No 357
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.96 E-value=0.073 Score=52.29 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=39.0
Q ss_pred HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072 161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV 213 (413)
Q Consensus 161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~ 213 (413)
+..+++|++++.+.+|+.|.. + ++ .|.++.|.++.+|.+|+|||.+.
T Consensus 67 dwy~~~~i~L~~~~~v~~idr--~--~k--~V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDR--A--NK--VVTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred hhHHHcCcEEEcCCeeEEecc--C--cc--eEEccCCcEeecceeEEecCccc
Confidence 345678999999999999988 5 22 56778899999999999999654
No 358
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.01 Score=53.32 Aligned_cols=34 Identities=35% Similarity=0.299 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3569999999999999999999999999999753
No 359
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=0.0093 Score=54.07 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||.|+.|+++|..|++.|++|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 49999999999999999999999999999764
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.93 E-value=0.069 Score=53.74 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~ 40 (413)
..+|+|||||..|+-+|..|.+.|. +|+|+.+..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3579999999999999999999986 699998653
No 361
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.86 E-value=0.096 Score=54.79 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+|+|||||.+|+-+|..+.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 57999999999999999999999999999864
No 362
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.85 E-value=0.092 Score=54.59 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~-g-~~V~lvE~~~ 40 (413)
.+|+|||||.+|+-+|..+.+. | .+|+|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 5799999999999999998887 5 4899998754
No 363
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.81 E-value=0.013 Score=52.92 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 56999999999999999999999999999985
No 364
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.014 Score=56.66 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..+|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3479999999999999999999999999999754
No 365
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.015 Score=52.11 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999753
No 366
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.025 Score=50.70 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=38.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s 48 (413)
..|||+|+|.|+.=+..+..|+..|.+|+.||+++.-|...++
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as 47 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS 47 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence 4799999999999999999999999999999999987654443
No 367
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.56 E-value=0.023 Score=51.52 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
|+ |.+..+|+|||+|..|..+|+.|+..|+ +|+|+|..+.
T Consensus 1 ~~-~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MT-MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CC-CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 44 3345789999999999999999999996 9999997654
No 368
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.55 E-value=0.016 Score=55.88 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.|+|||.|.+|+++|+.|.++|++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999987543
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.015 Score=52.05 Aligned_cols=32 Identities=41% Similarity=0.660 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.|.|||+|..|...|..|+++|++|+++|.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999864
No 370
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.51 E-value=0.02 Score=55.45 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
|.++..-..|.|||+|.+|...|..|++.|++|+++|+.+.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 43333345699999999999999999999999999998653
No 371
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.42 E-value=0.021 Score=54.70 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.4
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 357999999999999999999999999999987654
No 372
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.42 E-value=0.021 Score=52.62 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
++|.|||+|..|...|..|+++|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999753
No 373
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.40 E-value=0.022 Score=53.96 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
...++|||||+.|+-.|..+++.|.+|+|||+.+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 357999999999999999999999999999998764
No 374
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.31 E-value=0.083 Score=51.00 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999986543
No 375
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.31 E-value=0.03 Score=46.96 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 35789999999999999999999998 6999998744
No 376
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.027 Score=51.15 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.+|.|||+|..|...|..|++.|++|+++|...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999753
No 377
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.25 E-value=0.024 Score=51.30 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~ 38 (413)
+|+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 499999999999999999999999999987
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.25 E-value=0.035 Score=44.58 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~ 38 (413)
....|+|||||-.|..-|..|.+.|.+|+||..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 356899999999999999999999999999954
No 379
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.24 E-value=0.024 Score=51.26 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
+|+|||+|..|...|..|++.|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4999999999999999999999999999974
No 380
>PRK07846 mycothione reductase; Reviewed
Probab=95.21 E-value=0.026 Score=54.08 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
..+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 358999999999999999999999999999987643
No 381
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.21 E-value=0.028 Score=50.58 Aligned_cols=33 Identities=42% Similarity=0.402 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|..+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 459999999999999999999999999999754
No 382
>PRK06370 mercuric reductase; Validated
Probab=95.21 E-value=0.093 Score=50.64 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 57999999999999999999999999999987653
No 383
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.023 Score=50.97 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|..+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999764
No 384
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.17 E-value=0.032 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+.|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999853
No 385
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.16 E-value=0.026 Score=54.47 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=32.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 358999999999999999999999999999987643
No 386
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.15 E-value=0.037 Score=46.52 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3468999999999999999999999999999753
No 387
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.13 E-value=0.029 Score=54.15 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+++|||+|.+|+-+|..|++.|.+|+|+++.+..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 58999999999999999999999999999987543
No 388
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.10 E-value=0.03 Score=50.02 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999998753
No 389
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.06 E-value=0.11 Score=50.12 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=32.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 357999999999999999999999999999987643
No 390
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.06 E-value=0.04 Score=46.40 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
...|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999864
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.036 Score=53.27 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=31.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999864
No 392
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.03 E-value=0.038 Score=43.16 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~ 42 (413)
+..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 4679999999999999999999998 89999987543
No 393
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.00 E-value=0.019 Score=48.90 Aligned_cols=32 Identities=47% Similarity=0.629 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015072 10 VIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF 41 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~ 41 (413)
.+|||||++|.++|-.|+.. ..+|+|+.+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 68999999999999999986 678999977544
No 394
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.96 E-value=0.031 Score=52.78 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..|.|||.|..|+.+|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999997643
No 395
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.94 E-value=0.035 Score=53.57 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+++|||||.+|+-+|..|++.|.+|+|+++.+..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 57999999999999999999999999999987653
No 396
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.91 E-value=0.033 Score=53.29 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 57999999999999999999999999999987543
No 397
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.90 E-value=0.037 Score=50.04 Aligned_cols=32 Identities=41% Similarity=0.701 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~ 40 (413)
+|.|||+|..|.++|+.|+++| .+|+|+|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4999999999999999999999 4899999864
No 398
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.90 E-value=0.03 Score=46.49 Aligned_cols=38 Identities=34% Similarity=0.379 Sum_probs=33.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+.+...|.|||+|..|.-+|...+..|+.|.|+|++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34557899999999999999999999999999998643
No 399
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.86 E-value=0.23 Score=51.90 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=29.2
Q ss_pred CccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~ 40 (413)
..+|+|||||.+|+-+|..+.+. |. +|+||++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35799999999999999998886 75 899998754
No 400
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.85 E-value=0.039 Score=49.75 Aligned_cols=32 Identities=31% Similarity=0.628 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~ 39 (413)
++|.|||+|..|..+|+.|+.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999887 89999974
No 401
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.68 E-value=0.066 Score=41.79 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~ 39 (413)
+...++|||+|-+|..+++.|.+.|.+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457899999999999999999999986 9999875
No 402
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.68 E-value=0.044 Score=52.58 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||||..|+-+|..|++.|.+|+||++.+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5799999999999999999999999999998654
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.62 E-value=0.026 Score=41.68 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=30.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
+...|+|||||-.|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999876
No 404
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.61 E-value=0.059 Score=43.68 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCccEEEECCCH-HHHHHHHHHHHcCCcEEEEccc
Q 015072 6 ENFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
...+++|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999996 6999999999999999999875
No 405
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.53 E-value=0.05 Score=52.76 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 406
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.52 E-value=0.061 Score=48.71 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.++|.|||+|..|...|..|++.|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3569999999999999999999999999999853
No 407
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.50 E-value=0.071 Score=41.96 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.7
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGg-G~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
+|+|||+ |-.|.++|+.|...+. ++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5999999 9999999999999865 799999863
No 408
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.49 E-value=0.36 Score=51.09 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCc-EEEEcc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~ 38 (413)
..+|+|||||.+|+-+|..+.+.|.+ |+++.+
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r 603 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR 603 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence 35899999999999999999999874 777764
No 409
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.47 E-value=0.042 Score=52.03 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+|.|||.|..|+.+|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 499999999999999999999999999998653
No 410
>PRK04148 hypothetical protein; Provisional
Probab=94.44 E-value=0.041 Score=42.35 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.2
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3579999999 999999999999999999998653
No 411
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.41 E-value=0.57 Score=42.99 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=32.8
Q ss_pred cCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcC
Q 015072 166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAW 212 (413)
Q Consensus 166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~ 212 (413)
..+.++..++|.+++. .++ +.+.+.+. .| ++++.|.||+|||..
T Consensus 291 ~~v~l~~~~ev~~~~~--~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEP--AGD-GRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeec--CCC-ceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 4588899999999998 743 32555432 23 378999999999986
No 412
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.40 E-value=0.055 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||+|..|...|..|++.|++|+++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 49999999999999999999999999998853
No 413
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.36 E-value=0.061 Score=49.04 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=52.9
Q ss_pred eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~ 214 (413)
.-+-|.-+.++-.+..++.||.++-+..|.++.+ . .+.+.++.+||.+++.|.||+|+|.--+
T Consensus 388 ~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~--~~nl~lkL~dG~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 388 EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--C--CKNLVLKLSDGSELRTDLVVVAVGEEPN 450 (659)
T ss_pred hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--h--ccceEEEecCCCeeeeeeEEEEecCCCc
Confidence 3445677777777888889999999999999988 6 5677888999999999999999997544
No 414
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.36 E-value=0.22 Score=47.01 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh
Q 015072 164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~ 215 (413)
.+.++.++.++.|+++.. . .. .+.+.+| ++.+|++|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~--~--~~--~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDP--E--NK--VVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecC--C--CC--EEEECCC-cccccEEEEcCCCcccC
Confidence 346789999999999987 5 23 3555666 59999999999987653
No 415
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.36 E-value=0.18 Score=49.23 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=29.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
..+|+|||+|.+|+=+|.+|++...+|.+.-|.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 468999999999999999999998899998765
No 416
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.35 E-value=0.067 Score=40.44 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
|+|+|.|-.|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999777999999875
No 417
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.35 E-value=0.07 Score=43.46 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=29.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
...|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999753
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.24 E-value=0.052 Score=48.40 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||.|..|.+.|..|+++|++|+++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 49999999999999999999999999999753
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.20 E-value=0.083 Score=46.28 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~ 42 (413)
....|+|||.|-.|..+|..|++.| .+++|+|.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 3578999999999999999999999 599999987543
No 420
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.15 E-value=0.058 Score=52.17 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|.+|...|..|++.|++|+++|+.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 459999999999999999999999999999864
No 421
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.14 E-value=0.36 Score=48.65 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=28.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~ 39 (413)
.+|+|||+|..|+-+|..+.+.|. +|+++.+.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr 484 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR 484 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 579999999999999999888885 79999875
No 422
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.13 E-value=0.064 Score=49.02 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999853
No 423
>PRK13984 putative oxidoreductase; Provisional
Probab=94.13 E-value=0.55 Score=47.04 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=25.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC------cEEEEc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ------KTLLLE 37 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~------~V~lvE 37 (413)
.+|+|||||.+|+-+|..|++.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999998753 566653
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.10 E-value=0.07 Score=43.23 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
.+|.|||-|..|...|..|.++|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 469999999999999999999999999999763
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.06 E-value=0.084 Score=48.27 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
.+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35789999999999999999999998 9999998654
No 426
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.06 E-value=0.093 Score=44.49 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 35789999999999999999999998 6999998754
No 427
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.99 E-value=0.088 Score=48.12 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35689999999999999999999998 8999998754
No 428
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.81 Score=41.19 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=31.2
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..+|+|||||-+.+--|+.|++.+.+|+|+=+.+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence 35999999999999999999999999999977543
No 429
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.92 E-value=0.18 Score=46.83 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-------------CcEEEEcccCCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRG-------------QKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g-------------~~V~lvE~~~~~ 42 (413)
.+++|||||.+|.-+|-+|+++- .+|+|||+.+..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 47999999999999999998741 389999998764
No 430
>PRK06116 glutathione reductase; Validated
Probab=93.91 E-value=0.076 Score=51.03 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5799999999999999999999999999998754
No 431
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.89 E-value=0.086 Score=48.57 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~ 40 (413)
.+|+|||+|-.|..+|..|+++| .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 46999999999999999999998 8999999874
No 432
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.88 E-value=0.081 Score=51.46 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999864
No 433
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.87 E-value=0.13 Score=43.13 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
...++|+|.|-.|..+|..|.+.|.+|+++|..
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999998864
No 434
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.87 E-value=0.085 Score=50.53 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999998654
No 435
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.81 E-value=0.072 Score=49.75 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
+|.|||.|..|+.+|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 49999999999999988885 999999998653
No 436
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.81 E-value=0.07 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 5799999999999999999999999999998653
No 437
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.75 E-value=0.11 Score=42.47 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 6999998754
No 438
>PRK14694 putative mercuric reductase; Provisional
Probab=93.73 E-value=0.093 Score=50.70 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+++|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 57999999999999999999999999999874
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.73 E-value=0.095 Score=44.83 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=28.1
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 9 dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
+|.||| +|..|.++|..|++.|++|++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 499997 7999999999999999999999764
No 440
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.71 E-value=0.083 Score=50.59 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~ 40 (413)
++|+|||.|..|+.+|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 35999999999999999999984 7899999764
No 441
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.70 E-value=0.086 Score=51.04 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999864
No 442
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.69 E-value=0.12 Score=43.42 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
.+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 45789999999999999999999997 8999998754
No 443
>PRK14727 putative mercuric reductase; Provisional
Probab=93.67 E-value=0.087 Score=51.04 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999874
No 444
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.67 E-value=0.13 Score=40.66 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~ 42 (413)
.|+|||.|-.|..+|..|++.|. +++|+|.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 48999999999999999999998 79999987543
No 445
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.65 E-value=0.1 Score=47.21 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~ 40 (413)
.+|+|||+|..|..+|+.|+..|+ +|.|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999853
No 446
>PRK13748 putative mercuric reductase; Provisional
Probab=93.61 E-value=0.088 Score=52.20 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999975
No 447
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.61 E-value=0.065 Score=50.68 Aligned_cols=36 Identities=39% Similarity=0.497 Sum_probs=32.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
.+|.+|||+|-+|+.+|..|++.|.++.++-+....
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~ 90 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPT 90 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccccc
Confidence 489999999999999999999999999999876543
No 448
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.60 E-value=0.088 Score=47.45 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|+|+|+|..|...|+.|++.|..|+++-+.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 49999999999999999999998888887765
No 449
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.58 E-value=0.14 Score=46.44 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=30.6
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
..+|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4689999999999999999999987 799999754
No 450
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.58 E-value=0.42 Score=49.48 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.6
Q ss_pred ccEEEECCCHHHHHHHHHHHH---cCCcEEEEcc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQ 38 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~---~g~~V~lvE~ 38 (413)
..|+|||||.+|+-+|..+.. .+.++++++.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 579999999999999987655 2566777665
No 451
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.55 E-value=0.1 Score=48.42 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
..+|+|||+|.+|..+|..|.+.|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999999999999999999999999999975
No 452
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.54 E-value=0.078 Score=53.84 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|.+|..+|..++..|++|+|+|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 453
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.45 E-value=0.13 Score=44.52 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~ 42 (413)
...+|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 35789999999999999999999996 89999987543
No 454
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.40 E-value=0.07 Score=46.76 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
.-+|+|||||++|.-+|.-+.-.|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999986
No 455
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.39 E-value=0.086 Score=53.44 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|.+|..+|..++.+|++|+|+|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 456
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.36 E-value=0.11 Score=46.37 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||||.+|...|..++..|++|+++|..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 469999999999999999999789999999863
No 457
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.25 E-value=0.15 Score=44.45 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
.+.+|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35789999999999999999999997 8999998744
No 458
>PRK08328 hypothetical protein; Provisional
Probab=93.25 E-value=0.16 Score=43.77 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=31.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 5689999999999999999999997 8999987654
No 459
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.17 E-value=0.16 Score=45.99 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=30.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
+.+|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999876 799999754
No 460
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.11 E-value=0.11 Score=46.73 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072 10 VIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~ 40 (413)
|.|||+|..|..+|+.|+.+|+ +|+|+|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999877 999999864
No 461
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.09 E-value=0.15 Score=43.73 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.7
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCCc---EEEEcccC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQK---TLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~---V~lvE~~~ 40 (413)
....++|+|+|-+|..+|..|.+.|.+ |.|+|+..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 346899999999999999999999974 99999863
No 462
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.09 E-value=0.16 Score=43.66 Aligned_cols=36 Identities=44% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
.+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35789999999999999999999997 8999998754
No 463
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.02 E-value=1.6 Score=42.24 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQK 32 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~ 32 (413)
.+|+|||+|..|+-+|..|.+.+.+
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~~~~ 191 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRPTDE 191 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhCccc
Confidence 5799999999999999999987433
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.00 E-value=0.11 Score=52.89 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||+|.+|..+|..++..|++|+|+|..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 469999999999999999999999999999864
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.94 E-value=0.16 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.4
Q ss_pred CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~ 40 (413)
..+|+|||+|..|.++|+.|+..| .++.|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999988 5899999764
No 466
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.15 Score=49.15 Aligned_cols=34 Identities=21% Similarity=0.058 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
...|+|+|.|.+|.++|..|.++|.+|++.|.+.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 467
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.82 E-value=0.18 Score=46.37 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
|.....+++|.|||+|..|.++|..|++.| .|+++.+.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~ 38 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRS 38 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence 433445578999999999999999999998 67776543
No 468
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.81 E-value=0.17 Score=48.66 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..++|+|+|-+|+++|..|+++|.+|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999754
No 469
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.80 E-value=0.3 Score=34.62 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=29.7
Q ss_pred CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcc
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ 38 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~ 38 (413)
...+++|+|.|.+|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346799999999999999999998 678999988
No 470
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=0.14 Score=48.17 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=32.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
...|+|+|-|.+|+++|..|.++|.+|++.|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999976543
No 471
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.70 E-value=0.14 Score=45.99 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+|.|||.|..|...|..|++.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38999999999999999999999999998764
No 472
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.68 E-value=0.13 Score=39.98 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
++|+|+|..+..+|..++..|++|+|+|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999997643
No 473
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.67 E-value=0.2 Score=44.36 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=31.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~ 42 (413)
...|+|||.|..|-+.|+.|.++|+.|.+++++...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence 356999999999999999999999999999887543
No 474
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.64 E-value=0.2 Score=48.10 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
..++|+|.|-+|+++|..|+++|++|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5799999999999999999999999999997543
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.59 E-value=0.17 Score=45.72 Aligned_cols=33 Identities=36% Similarity=0.669 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~ 41 (413)
+|+|||+|-+|.++|+.|+.+| .+|+|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999998 48999998643
No 476
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.52 E-value=0.16 Score=48.91 Aligned_cols=34 Identities=26% Similarity=0.141 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~-~A~~L~~~g~~V~lvE~~~ 40 (413)
...|+|||.|-+|++ +|..|.++|++|++.|...
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 356999999999999 6999999999999999754
No 477
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=0.2 Score=45.70 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=38.5
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072 5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s 48 (413)
..++||||||.|+.=..+|...++.|.+|+=+|++..-|+.-+|
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence 45799999999999999999999999999999999887665443
No 478
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.30 E-value=0.23 Score=46.30 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 4 SGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 4 ~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
+...++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 345678999999 9999999999999999999998753
No 479
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.29 E-value=0.23 Score=44.28 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~ 39 (413)
.+|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999997 79999885
No 480
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.26 E-value=0.24 Score=42.70 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcC-----------CcEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRG-----------QKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g-----------~~V~lvE~~~~ 41 (413)
+..+|+|||+|-.|..++..|++.| .+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4678999999999999999999964 38999998754
No 481
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.25 E-value=0.21 Score=48.60 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999653
No 482
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.25 E-value=0.2 Score=45.40 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
.+|+|||.|..|.+.|..|.+.|. +|+++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999885 899998753
No 483
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.24 E-value=0.26 Score=42.34 Aligned_cols=35 Identities=43% Similarity=0.401 Sum_probs=32.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 5789999999999999999999997 9999998754
No 484
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.22 E-value=0.25 Score=41.40 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=31.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
+..|+|||.|-.|+.+|..|++.|. +++|+|.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 5789999999999999999999998 7999998754
No 485
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20 E-value=0.21 Score=48.09 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..|+|+|.|.+|+++|..|.++|++|++.|..+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 486
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.18 E-value=0.22 Score=46.40 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=30.4
Q ss_pred CccEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072 7 NFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
...|+||| .|..|.+.|..|.++|+.|+++++.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 46799999 8999999999999999999999974
No 487
>PRK08223 hypothetical protein; Validated
Probab=92.17 E-value=0.26 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=32.7
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~ 42 (413)
.+..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve 63 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFE 63 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 35789999999999999999999997 89999987543
No 488
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.15 E-value=0.25 Score=41.47 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072 6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~ 41 (413)
.+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 35789999999999999999999997 6999998754
No 489
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.13 E-value=0.2 Score=46.88 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
...|+|+|.|..|+.+|..|...|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3579999999999999999999999999998764
No 490
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.08 E-value=0.2 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~ 40 (413)
..+|+|||||.+|+-+|..|.+.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999998 899998753
No 491
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.08 E-value=0.16 Score=51.64 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~ 40 (413)
..|.|||+|.+|...|..++ ..|++|+++|..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999998 7899999999754
No 492
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=92.06 E-value=0.17 Score=51.30 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~ 40 (413)
..|.|||+|..|...|..++ +.|++|+|+|..+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999998 5899999999764
No 493
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.00 E-value=0.25 Score=35.82 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CcEEEE-cccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRG---QKTLLL-EQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g---~~V~lv-E~~~ 40 (413)
+|.|||+|-.|.+++..|.+.| .+|.++ ++.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 3789999999999999999999 899977 6653
No 494
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.93 E-value=0.25 Score=44.48 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
+|.|||+|-.|.++|+.|..++. ++.|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 48999999999999999999876 799999753
No 495
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.3 Score=42.11 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
|.+..+...++|+|| |..|..+|.+|+++|++|++++++.
T Consensus 1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 433333456999987 8899999999999999999998853
No 496
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.85 E-value=0.2 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
..+|+|||+|.+|+.++..+...|.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999764
No 497
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.84 E-value=0.18 Score=48.34 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~ 41 (413)
.+|.|||.|..|...|..|+++|++|+++++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998653
No 498
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.82 E-value=0.28 Score=43.48 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCCCCCccEEEECCC---HHHHHHHHHHHHcCCcEEEEccc
Q 015072 1 MEFSGENFDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 1 M~~~~~~~dvvIIGgG---~aG~~~A~~L~~~g~~V~lvE~~ 39 (413)
|+.+.+..-++|.||+ =.|..+|..|++.|.+|++++++
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 5555555678999987 58999999999999999998764
No 499
>PLN02602 lactate dehydrogenase
Probab=91.80 E-value=0.31 Score=44.72 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072 8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~ 40 (413)
.+|+|||+|-.|.++|+.|...+. ++.|+|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 689999999999999999998876 799999754
No 500
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.78 E-value=0.25 Score=44.11 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072 7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~ 40 (413)
...++|||.|-+|..+|..|+..|.+|+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999998854
Done!