BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015075
         (413 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 146/388 (37%), Gaps = 84/388 (21%)

Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGL--------LSSFSPN---------YV-S 43
           ++G    G  S+ +GRR S    A++  ++G+         +S +P+         YV  
Sbjct: 69  IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128

Query: 44  LVIFRCXXXXXXXXXXXXXA-YFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV--- 99
            VI+R                Y  E  P   RG+ +V+ + F     IF   L + V   
Sbjct: 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK-LVSFNQF---AIIFGQLLVYCVNYF 184

Query: 100 ---------MTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMA 150
                    +    WR++ A   +P+   L+     PESPR+L ++ +   A  IL K+ 
Sbjct: 185 IARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244

Query: 151 FVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIR 210
                    G  ++ +A++E +        H L   RK   +L        ++F   +I 
Sbjct: 245 ---------GNTLATQAVQEIK--------HSLDHGRKTGGRL--------LMFGVGVIV 279

Query: 211 TTLLLWVL--FFA-NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL 267
             ++L +   F   NV  YY   +              K L A  S D +L +   I  +
Sbjct: 280 IGVMLSIFQQFVGINVVLYYAPEVF-------------KTLGA--STDIAL-LQTIIVGV 323

Query: 268 AELPGLILSAIIVDKIGRKLSMVLMFVSACI--FLLPLVFHQSA---VVTTVLLFGVRMC 322
             L   +L+ + VDK GRK   ++  +   I  F L   F+  A   V    +LF V   
Sbjct: 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF 383

Query: 323 VTGTITVATIYAPEIYPTSARTTGFGVA 350
                 V  +   EI+P + R     +A
Sbjct: 384 AMSWGPVCWVLLSEIFPNAIRGKALAIA 411


>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
           From E.Coli
          Length = 451

 Score = 35.0 bits (79), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 26/204 (12%)

Query: 171 NEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV 230
            E  N   D +     +++T K        FM    + +    LLW +  ANVF Y    
Sbjct: 220 EEYKNDYPDDYNEKAEQELTAK------QIFM----QYVLPNKLLWYIAIANVFVY---- 265

Query: 231 LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK---- 286
           LL   +         +V H    K +  Y   F+   A +PG +L   + DK+ R     
Sbjct: 266 LLRYGILDWSPTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRGNRGA 322

Query: 287 ---LSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR 343
                M L+ ++  ++ +    + +  +  +++ G    + G + +  ++A E+ P  A 
Sbjct: 323 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG--FLIYGPVMLIGLHALELAPKKAA 380

Query: 344 TTGFGVASSLGKVGGMVCPLVAVG 367
            T  G     G +GG V     VG
Sbjct: 381 GTAAGFTGLFGYLGGSVAASAIVG 404


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,261,646
Number of Sequences: 62578
Number of extensions: 360427
Number of successful extensions: 742
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 5
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)