Query 015075
Match_columns 413
No_of_seqs 161 out of 1304
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.6E-45 2.6E-49 354.6 33.3 373 2-412 69-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.9E-31 2E-35 253.3 25.6 344 2-396 76-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.6E-28 1.9E-32 231.7 32.9 316 2-388 75-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 4E-27 1.4E-31 229.3 25.3 375 2-404 68-480 (491)
5 2gfp_A EMRD, multidrug resista 99.9 3.2E-26 1.1E-30 215.1 8.5 130 2-131 49-180 (375)
6 2cfq_A Lactose permease; trans 99.9 3.5E-25 1.2E-29 211.1 14.4 344 2-405 57-409 (417)
7 2xut_A Proton/peptide symporte 99.9 3.4E-24 1.2E-28 210.3 17.7 123 2-124 68-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.2E-11 4.1E-16 118.3 17.5 140 262-401 68-212 (451)
9 3o7q_A L-fucose-proton symport 99.2 3.4E-10 1.2E-14 107.7 18.7 109 261-369 66-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 3.3E-10 1.1E-14 109.7 17.1 136 262-397 60-198 (491)
11 2gfp_A EMRD, multidrug resista 99.2 1.2E-10 4.2E-15 108.6 11.5 141 262-402 41-181 (375)
12 2cfq_A Lactose permease; trans 99.1 6.3E-11 2.2E-15 112.4 6.9 129 3-131 274-405 (417)
13 2xut_A Proton/peptide symporte 99.0 3.5E-09 1.2E-13 103.3 15.7 135 262-396 60-199 (524)
14 4gc0_A D-xylose-proton symport 98.8 3.4E-08 1.2E-12 95.4 14.3 103 266-368 65-185 (491)
15 2g9p_A Antimicrobial peptide l 47.8 8.9 0.0003 18.6 1.3 14 7-20 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.6e-45 Score=354.56 Aligned_cols=373 Identities=19% Similarity=0.271 Sum_probs=261.4
Q ss_pred ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHhhhcccch-hHHH
Q 015075 2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSS------------------FSPNYVSLVIFRCFVGVGLGGV-PVFL 62 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~------------------~a~~~~~l~~~R~l~G~~~g~~-~~~~ 62 (413)
++|++++|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|+|.|+. +...
T Consensus 69 ~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~ 148 (491)
T 4gc0_A 69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSP 148 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998 4789999999999999999986 6778
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHhhHHHHHHHHHhhcCCCCchHHh
Q 015075 63 AYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--------RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLC 134 (413)
Q Consensus 63 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~ 134 (413)
.|++|++|+++||+..++.+.++..|.++++.++..... ..+||+.+.+..++.++..+..+++||||+|+.
T Consensus 149 ~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~ 228 (491)
T 4gc0_A 149 MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM 228 (491)
T ss_dssp HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHH
T ss_pred HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHH
Confidence 999999999999999999999999999999888877643 246999999999999888889999999999999
Q ss_pred hccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHH
Q 015075 135 AKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLL 214 (413)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.|++.+++++.+++....+.. +.+..+.++..++ .++.. .....+..+. ....
T Consensus 229 ~~~~~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~--~~~~ 281 (491)
T 4gc0_A 229 SRGKQEQAEGILRKIMGNTLA-----------TQAVQEIKHSLDH-------------GRKTG-GRLLMFGVGV--IVIG 281 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-------------HHHHT-THHHHSCCTH--HHHH
T ss_pred HcCchhHHHHhHHHhcCCchh-----------HHHHHHHHHHHHh-------------hhhhh-hHHHHhcccH--HHHH
Confidence 999999999988876543210 0011000000000 00000 0111111111 1112
Q ss_pred HHHHHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHH
Q 015075 215 LWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 294 (413)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~ 294 (413)
.+...+.+...++....+.+.+... .............+.++..+++.+++++++||+|||+..+.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~ 350 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL 350 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchH
Confidence 2222222222222222222211100 01111222334556677788899999999999999998887766
Q ss_pred HHHHHHHHHHh----cchhHHH-HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075 295 SACIFLLPLVF----HQSAVVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 369 (413)
Q Consensus 295 ~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~ 369 (413)
...+.++.+.. ....... ....+....+..+..++.+.+.+|++|++.|+++.|+++++++++++++|.+.+.+.
T Consensus 351 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~ 430 (491)
T 4gc0_A 351 GMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD 430 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554443321 1122222 222222333444556788999999999999999999999999999999998877664
Q ss_pred hc------cchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhhhhhc
Q 015075 370 TS------CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 412 (413)
Q Consensus 370 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~~~ 412 (413)
+. .+...++++++++++++.+..+++.||||||++||.++-.|
T Consensus 431 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 431 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 42 22345678899999999998988999999999999875443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.98 E-value=5.9e-31 Score=253.35 Aligned_cols=344 Identities=14% Similarity=0.178 Sum_probs=229.1
Q ss_pred ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075 2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR 76 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~ 76 (413)
.++++++|+++||+|||+++..+.++++++.+++++ ++|++.++++|+++|++.|.. +...+++.|++|+++|++
T Consensus 76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 155 (451)
T 1pw4_A 76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG 155 (451)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhH
Confidence 367889999999999999999999999999999999 999999999999999998865 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075 77 WMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ 154 (413)
Q Consensus 77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~-Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~ 154 (413)
.+++.+.+..+|.++++.+++.+.+..| ||+.|++.+++.++. ++..+++||+|+....+.+.++
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 222 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------- 222 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------
Confidence 9999999999999999999998888888 999999988877654 4556778998874221110000
Q ss_pred CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccch--hhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh
Q 015075 155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSS--FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL 232 (413)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (413)
+++.+++.+++ ++ .+..... .+..++.+... ......+.....++....+
T Consensus 223 ----------~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 223 ----------KNDYPDDYNEK---AE------------QELTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp ----------CCC----------------------------CCTHHHHHHTSSCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ----------cccccccchhh---hh------------cccccccchHHHHHcCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00 0000001 12222222211 1222222222222222222
Q ss_pred hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--ChhHHHHHHHHHHH-HHHHHHHhc--c
Q 015075 233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFH--Q 307 (413)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~--~ 307 (413)
.+.+... .++.+. ...........++.+++.++.+++.||+ |||+.+..+..... +.++.+... .
T Consensus 275 ~~~~~~~-------~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 275 SPTYLKE-------VKHFAL---DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHBTT-------BSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHH-------hcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 2222111 111111 1122334455667788999999999999 99988776655444 333333332 1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhhccchhHHHHHHHHHHH
Q 015075 308 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFV 386 (413)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 386 (413)
+........+...++..+..+..+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+++.+++.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3333333333444444455566678899999999999999999999999 999999999999888777777777777777
Q ss_pred HHHHHhhccc
Q 015075 387 LAIASSLLFP 396 (413)
Q Consensus 387 ~~~~~~~~~~ 396 (413)
++.+...++.
T Consensus 425 ~~~~~~~~~~ 434 (451)
T 1pw4_A 425 LAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=5.6e-28 Score=231.68 Aligned_cols=316 Identities=11% Similarity=0.042 Sum_probs=210.3
Q ss_pred ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075 2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW 77 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~ 77 (413)
.++++++|+++||+|||+++..+.++++++.++. ++++|++.+++.|+++|++.|.. +...+++.|++|+++|++.
T Consensus 75 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 75 FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 4688999999999999999999999999999999 89999999999999999999875 6778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCC-------------------------hHHHHHHhhHHHHHHHHHh--hcCCCC
Q 015075 78 MVALSAFWTAGTIFEASLAWVVM-TRLN-------------------------WRWLLAFSSVPSFALLLFY--GLAPES 129 (413)
Q Consensus 78 ~~~~~~~~~~G~~~~~~l~~~l~-~~~~-------------------------Wr~~f~~~~i~~~~~~~~~--~~~pEs 129 (413)
+++.+.+..+|.++++.+++.+. +..+ ||+.|++.+++.++..+.. ...||+
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999998887 5544 9999987776665543332 334655
Q ss_pred chHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhh
Q 015075 130 PRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI 209 (413)
Q Consensus 130 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (413)
++.. + + + ++ +. .....++.+++.+..
T Consensus 235 ~~~~---~------------------~--------~---~~-~~---------------------~~~~~~~~~~~~~~~ 260 (438)
T 3o7q_A 235 QSDN---H------------------S--------D---AK-QG---------------------SFSASLSRLARIRHW 260 (438)
T ss_dssp TTTC---C------------------C--------C---SS-TT---------------------SHHHHHHHHTTCSHH
T ss_pred cccc---c------------------c--------c---cc-cc---------------------chhhhHHHHHhChHH
Confidence 4310 0 0 0 00 00 000112222322222
Q ss_pred hHHHHHHHHHHHHHHHhhhHH-hhhhh-ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhH
Q 015075 210 RTTLLLWVLFFANVFSYYGAV-LLTSK-LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL 287 (413)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~ 287 (413)
+........ ....++... +...+ +.. .++.+. ........+..+..+++.++.++++||+|||+
T Consensus 261 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 261 RWAVLAQFC---YVGAQTACWSYLIRYAVEE--------IPGMTA---GFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--------STTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhhc--------cCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222111 111111111 11111 110 011111 11122334456677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHH
Q 015075 288 SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVG 367 (413)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~ 367 (413)
.+..+.+...+.++.+....+... ....+...++.....+..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 888777766655554444443332 22233344555556677888888999987 899998887 788999999999999
Q ss_pred Hhhccc-hhHHHHHHHHHHHHH
Q 015075 368 LVTSCH-LRLAVILFEVVFVLA 388 (413)
Q Consensus 368 l~~~~~-~~~~~~~~~~~~~~~ 388 (413)
+.+..+ ....+++..++.++.
T Consensus 404 l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 404 VSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHH
Confidence 988877 555555544444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=4e-27 Score=229.27 Aligned_cols=375 Identities=10% Similarity=-0.020 Sum_probs=206.5
Q ss_pred ccccchhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC--cchH
Q 015075 2 LLGAYSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRW 77 (413)
Q Consensus 2 ~~G~~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~ 77 (413)
.++++++|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|.. +...+++.|++|+++ |+..
T Consensus 68 ~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 147 (491)
T 4aps_A 68 YLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG 147 (491)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceee
Confidence 3678899999999 89999999999999999999999999999999999999998875 677899999999999 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc-CCCC----chHHhhccChHHHHHHHHH----
Q 015075 78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL-APES----PRYLCAKARTVDAHRILEK---- 148 (413)
Q Consensus 78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~-~pEs----p~~l~~~~~~~~a~~~~~~---- 148 (413)
.+.++...++|..++|.+++.+.+..|||+.|++.++..++..+...+ .|+. ++.-.++.+.++.++..++
T Consensus 148 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (491)
T 4aps_A 148 FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence 888899999999999999999988899999999887666544333222 1211 1100011122222222211
Q ss_pred ----------HHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHH
Q 015075 149 ----------MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL 218 (413)
Q Consensus 149 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (413)
....++.+ .+ +............. ...... ..+..... ....++. ......+..
T Consensus 228 l~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~--~~~~~~~-~~~~~~~~~ 291 (491)
T 4aps_A 228 VAGFIAIIVVMNLVGWNS--LP-----AYINLLTIVAIAIP---VFYFAW---MISSVKVT--STEHLRV-VSYIPLFIA 291 (491)
T ss_dssp CHHHHHHHHHHHHHSSCC--TT-----HHHHHHHHHHHHHH---HHHHHH---HC--------------C-TTHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcc--cc-----cchhhhhHHHHHHH---HHHHHH---Hhhccccc--HHHHHHH-HHHHHHHHH
Confidence 01111100 00 00000000000000 000000 00000000 0000011 111111111
Q ss_pred HHHHHHHhhhH-HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHH-----HH
Q 015075 219 FFANVFSYYGA-VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LM 292 (413)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-----~~ 292 (413)
.+.....+... ..+..+... ..+......+.. .....+..+++..+.+++.||+|||+... .+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAE--------RVDSSWFPVSWF---QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHH--------SCCCSSSCSGGG---TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHH--------HhccCccCHHHH---hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 11111111111 111111110 011111111211 12334455667788899999999985433 34
Q ss_pred HHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHH
Q 015075 293 FVSACIFLLPLVFH---------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL 363 (413)
Q Consensus 293 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~ 363 (413)
.+...+....+... .+........+...++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333222221 122222222333333333445667889999999999999999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 015075 364 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL 404 (413)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l 404 (413)
+.+.+.+ .+....+..++++++++.+..+++.++++++..
T Consensus 441 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 441 LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8775544 345566777777777777777777777766533
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=3.2e-26 Score=215.08 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=117.0
Q ss_pred ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075 2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA 80 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~ 80 (413)
.++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.+.. +...+++.|++|+++|++.++.
T Consensus 49 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (375)
T 2gfp_A 49 GVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSL 128 (375)
T ss_dssp HHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHH
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999998865 6778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCch
Q 015075 81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESPR 131 (413)
Q Consensus 81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~ 131 (413)
.+....+|..+++.+++.+.+..+||+.|++.++..++..+ ..+.+||+|+
T Consensus 129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99999999999999999988888999999988887766544 5566788764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=3.5e-25 Score=211.10 Aligned_cols=344 Identities=15% Similarity=0.100 Sum_probs=192.2
Q ss_pred ccccchhhHhhhhcCChHHHHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHhhhcccch-hHHHHHHHhhccC--CCc
Q 015075 2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAG---LLSSFSPNYV-SLVIFRCFVGVGLGGV-PVFLAYFLEFVPV--SHR 74 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~---~~~~~a~~~~-~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~--~~R 74 (413)
.++++++|+++||+|||+++..+..+++++. ...++++... .+...|++.|++.|.. +...+...++.++ ++|
T Consensus 57 ~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 136 (417)
T 2cfq_A 57 LLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS 136 (417)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Confidence 4688999999999999999998888775532 2223333221 2445677777765542 2222333344433 356
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075 75 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ 154 (413)
Q Consensus 75 g~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~ 154 (413)
+...+.......+|..++|.+++.+.+ .+||+.|++.+++.++.....++.||+|+. +.+.+
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------- 198 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA-------------- 198 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS--------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc--------------
Confidence 777777777888999999999888765 589999998877765555554444443310 00000
Q ss_pred CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH-hhh
Q 015075 155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLT 233 (413)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 233 (413)
+++ + +++ + +.....++.+++++........ .+.....++... .+.
T Consensus 199 ----------~~~-~--~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 199 ----------NAV-G--ANH----S--------------AFSLKLALELFRQPKLWFLSLY---VIGVSCTYDVFDQQFA 244 (417)
T ss_dssp ----------SSS-S--SCC----C--------------CCCHHHHHHHTTCHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred ----------ccc-c--ccc----c--------------cccHHHHHHHhcCCchhhHHHH---HHHHHHHHHHHHHHHH
Confidence 000 0 000 0 0000111222222211111111 111111111110 111
Q ss_pred hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 015075 234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT 313 (413)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (413)
.++... ++..............+..+...++.++.++++||+|||+.+..+.+...+....+...++.....
T Consensus 245 ~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 245 NFFTSF--------FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHT--------SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHH--------HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 111100 000000011111223344456677889999999999999988776665554444333333332222
Q ss_pred HHHHHHHHHhhhhhhhhheecccccccchhhhHHHHH-HhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Q 015075 314 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS 392 (413)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 392 (413)
.......++.....+..+.+.+|.+|++.|+++.++. +..+++|++++|.+.+.+.+..+....+.+.+++++++.+..
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2222222222223344577999999999999999996 777889999999999988876665566777777777777777
Q ss_pred hcccccccCcchh
Q 015075 393 LLFPFETMGRELK 405 (413)
Q Consensus 393 ~~~~~et~~~~l~ 405 (413)
+++.||+++.++-
T Consensus 397 ~~~~~~~~~~~~~ 409 (417)
T 2cfq_A 397 VFTLSGPGPLSLL 409 (417)
T ss_dssp TTSSCCSCTTCSS
T ss_pred HhhhcCCCchHHH
Confidence 7777887765443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=3.4e-24 Score=210.31 Aligned_cols=123 Identities=14% Similarity=0.210 Sum_probs=109.1
Q ss_pred ccccchhhHhhhhc-CChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075 2 LLGAYSWGIISDNY-GRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM 78 (413)
Q Consensus 2 ~~G~~~~g~l~Dr~-Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~ 78 (413)
.+++++.|+++||+ |||+++..+.++++++.++.++++ +++.+++.|+++|++.|.. +...+++.|++|+++|++..
T Consensus 68 ~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 147 (524)
T 2xut_A 68 YFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ 147 (524)
T ss_dssp HHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHH
Confidence 36788999999999 999999999999999999999999 9999999999999998875 77789999999999998777
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhh
Q 015075 79 VA---LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYG 124 (413)
Q Consensus 79 ~~---~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~ 124 (413)
+. .....++|..+++.+++.+.+..|||+.|++.++..++..+..+
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 66 88899999999999999888889999999988877665544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=1.2e-11 Score=118.32 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=105.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075 262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEI 337 (413)
Q Consensus 262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 337 (413)
..+..+...++.++.|+++||+|||+.+..+.++..+..+...+ .++........+..+++.....+...++.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34556667788999999999999999988887777665555544 44444444444444455555567778899999
Q ss_pred cccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075 338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMG 401 (413)
Q Consensus 338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~ 401 (413)
+|++.|+.+.|+.+....+|.+++|.+.+.+.+..+ +...+++.+++.++..+..++..||+..
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999888777776 6677777777777666666666667644
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.24 E-value=3.4e-10 Score=107.74 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075 261 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI 337 (413)
Q Consensus 261 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 337 (413)
......+...++.++.|+++||+|||+.+..+.+...+..+.. ...++.+......+..+++.....+....+.+|.
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 3445556667789999999999999999988877766655544 3344444444444444555555566778899999
Q ss_pred cccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075 338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLV 369 (413)
Q Consensus 338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~ 369 (413)
+|++.|+.+.++.+....+|..++|.+.+.+.
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888776
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=3.3e-10 Score=109.66 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=100.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheeccccccc
Q 015075 262 VFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 340 (413)
Q Consensus 262 ~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 340 (413)
.....++..++.++.|+++|| +|||+.+..+.+...+..+.....++........+..+++.....+....+.+|.+|+
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 445566677889999999999 8999999888877766665555555544444444444455555567788899999999
Q ss_pred ch--hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Q 015075 341 SA--RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF 397 (413)
Q Consensus 341 ~~--r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (413)
+. |+.+.++.+....+|..++|.+.+.+.+..++...+++.++..+++.+...+..|
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88 8888888889999999999999998888777777777766666666555544433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.17 E-value=1.2e-10 Score=108.56 Aligned_cols=141 Identities=16% Similarity=0.027 Sum_probs=103.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075 262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS 341 (413)
Q Consensus 262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 341 (413)
.....+...++.++.|+++||+|||+.+..+.+...+........++........+...++.....+....+.+|.+|++
T Consensus 41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 44555666778899999999999999888777766655554444444333333333444444445566788899999999
Q ss_pred hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075 342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR 402 (413)
Q Consensus 342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 402 (413)
.|+.+.++.+....+|..++|.+.+.+.+..+....+++.+++.++..+...+..||++.+
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9999999999999999999999988887766666667777777766666566667787654
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.11 E-value=6.3e-11 Score=112.36 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=105.6
Q ss_pred cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH-
Q 015075 3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA- 80 (413)
Q Consensus 3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~- 80 (413)
+|.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+.. +....++.|.+|++.||+..++
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 46788899999999999999888888888888888888888888888888876543 5556889999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH-hhcCCCCch
Q 015075 81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF-YGLAPESPR 131 (413)
Q Consensus 81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~ 131 (413)
++....+|..++|.+++.+.+..||+..|.+.++..++..+. ....||.++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 477888999999999998888889999998877776665443 445666544
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.04 E-value=3.5e-09 Score=103.32 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=95.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhhhhhhhhheecccccc
Q 015075 262 VFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP 339 (413)
Q Consensus 262 ~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 339 (413)
.....+...++.++.|+++||+ |||+.+..+.+...+..+...... +........+..+++.....+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3345556677889999999999 999998887776665555544444 44433333444444444556677889999999
Q ss_pred cchhhhHHHH---HHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075 340 TSARTTGFGV---ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 396 (413)
Q Consensus 340 ~~~r~~~~g~---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (413)
++.|+...+. .+...++|+.++|.+.+.+.+..+....+++.+++.+++.+...+..
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999776666 88888999999999888887766766677766666666555554433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.84 E-value=3.4e-08 Score=95.42 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=75.4
Q ss_pred HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh------------------cchhHHHHHHHHHHHHHhhhhh
Q 015075 266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTVLLFGVRMCVTGTI 327 (413)
Q Consensus 266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 327 (413)
.++.++|.++.|+++||+|||+.+..+.++..+..+...+ ..+.....+.-+..+++..+..
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999988877665544333221 2233334445555556666667
Q ss_pred hhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075 328 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL 368 (413)
Q Consensus 328 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l 368 (413)
+....+.+|..|++.|+...++.+....+|...++.+...+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 78899999999999999999999888888877777665444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=47.78 E-value=8.9 Score=18.59 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=11.3
Q ss_pred hhhHhhhhcCChHH
Q 015075 7 SWGIISDNYGRRKS 20 (413)
Q Consensus 7 ~~g~l~Dr~Grr~~ 20 (413)
++|.+..+||||-.
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 47889999999853
Done!