Query 015077
Match_columns 413
No_of_seqs 196 out of 345
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 2.8E-98 6E-103 770.5 36.2 382 28-413 15-403 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 7.2E-58 1.6E-62 451.3 28.6 243 170-412 1-249 (295)
3 KOG2569 G protein-coupled seve 100.0 1.3E-31 2.8E-36 266.0 3.1 238 165-405 123-372 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.2 2.1E-09 4.6E-14 104.7 23.0 204 190-397 2-215 (257)
5 KOG4290 Predicted membrane pro 97.7 0.0035 7.5E-08 63.8 17.8 184 202-395 159-349 (429)
6 PF09437 Pombe_5TM: Pombe spec 61.4 2.4 5.2E-05 39.4 -0.3 139 166-317 36-188 (256)
7 PF06123 CreD: Inner membrane 58.5 42 0.0009 35.7 8.2 81 165-250 239-332 (430)
8 PF06664 MIG-14_Wnt-bd: Wnt-bi 49.9 2.7E+02 0.0058 27.6 20.5 22 364-385 208-229 (298)
9 PF13268 DUF4059: Protein of u 43.5 1E+02 0.0022 24.7 6.1 47 360-410 20-67 (72)
10 PF14089 KbaA: KinB-signalling 39.8 3.3E+02 0.0071 25.6 10.0 14 349-362 157-170 (180)
11 KOG2569 G protein-coupled seve 39.4 25 0.00055 36.7 2.9 57 192-248 327-391 (440)
12 CHL00043 cemA envelope membran 37.4 28 0.00061 34.5 2.8 41 335-376 209-249 (261)
13 PF03040 CemA: CemA family; I 36.3 26 0.00056 34.1 2.3 40 335-375 178-217 (230)
14 COG4393 Predicted membrane pro 33.8 5.6E+02 0.012 26.6 14.5 33 375-407 230-262 (405)
15 PF13491 DUF4117: Domain of un 33.7 3.4E+02 0.0074 24.1 10.0 67 196-262 41-108 (171)
16 PRK02507 proton extrusion prot 32.0 38 0.00083 35.8 2.9 41 334-375 369-409 (422)
17 TIGR00739 yajC preprotein tran 28.6 71 0.0015 26.1 3.4 28 353-380 5-32 (84)
18 PF09971 DUF2206: Predicted me 26.9 7.3E+02 0.016 25.7 12.7 51 360-410 186-237 (367)
19 PRK05585 yajC preprotein trans 25.6 1E+02 0.0022 26.3 4.0 29 351-379 18-46 (106)
20 PLN03223 Polycystin cation cha 25.6 1.5E+02 0.0033 36.0 6.4 51 359-409 1177-1234(1634)
21 PF02699 YajC: Preprotein tran 24.5 1E+02 0.0022 24.9 3.6 25 353-377 4-28 (82)
22 KOG2678 Predicted membrane pro 24.3 1E+02 0.0022 30.1 4.0 30 382-411 206-235 (244)
23 PTZ00121 MAEBL; Provisional 23.7 33 0.00071 41.5 0.7 85 97-184 54-147 (2084)
24 PRK06265 cobalt transport prot 22.9 4.3E+02 0.0093 24.8 8.0 36 220-255 14-49 (199)
25 PF06781 UPF0233: Uncharacteri 21.5 1.6E+02 0.0035 24.4 4.2 36 210-245 27-62 (87)
26 PF12725 DUF3810: Protein of u 21.4 3.3E+02 0.0073 27.6 7.4 32 352-383 18-52 (318)
27 COG4590 ABC-type uncharacteriz 20.8 1.1E+03 0.024 25.8 11.4 54 203-260 498-560 (733)
28 PRK05886 yajC preprotein trans 20.5 1.6E+02 0.0034 25.5 4.1 22 352-373 5-26 (109)
29 PF11457 DUF3021: Protein of u 20.1 1E+02 0.0022 26.7 2.9 8 259-266 115-122 (136)
30 COG3965 Predicted Co/Zn/Cd cat 20.1 9.1E+02 0.02 24.4 12.4 26 211-236 20-45 (314)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.8e-98 Score=770.54 Aligned_cols=382 Identities=47% Similarity=0.821 Sum_probs=365.4
Q ss_pred ccceeeeccCCCccccCCeeeecCCCcccccc--CC---CCC--ceeEeecceeecccccccccccccCCcceEEEEEEe
Q 015077 28 SNASIHTYDNNPFRDVGNSALLPGGSEGLAAS--LD---GSR--SFIRFENVTFWRTKAAADEHSEMEHSTGLVQVVIFE 100 (413)
Q Consensus 28 ~~~~~h~y~~~~~~~~~n~~~~~~g~~Gmys~--~~---~~~--~~I~f~~v~f~~~~~~~~~~~~~~~~~g~v~~vIfe 100 (413)
+.+++|+|..+.|..+.|++.++||++|||++ ++ +.| |+|||+++++.|+++++++++ +.|.|+++|||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~~d~~~s~~p~~~~~f~~~t~~~~~~~~~~~n----~~~~v~~~ife 90 (518)
T KOG2568|consen 15 AWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFVSDLFGSLDPESFIRFDSITLVRTSESADEQN----SNGLVEALIFE 90 (518)
T ss_pred hhHhheechhhhhhhhhcceeeeccccccccccHHHhcCCCCccccccceeEEEEEccCcccccc----cccceeeeeee
Confidence 48999999999999999999999999999999 33 344 499999999999887655443 35789999999
Q ss_pred eccccccccccCCCceeeeeChhhhccCCCCCCCEEecCCCCCCCCceEEeEeeccCcccccCCCeeeecCCCceEEEEE
Q 015077 101 AADRNNIGGSAYGGQRSICCTPDLAKLEGCKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPITKTGMYNLFF 180 (413)
Q Consensus 101 ~~D~~~iG~~~~~g~~~~~C~~~~~~~g~C~~g~fIi~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I~ktG~Y~v~~ 180 (413)
|||+++||++.+++++.||||+++++.|.|++|++|+.|+++||.||++..+.+++++.+..++|..|+|+|||+||+++
T Consensus 91 ~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I~ktG~Y~v~~ 170 (518)
T KOG2568|consen 91 FKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPIKKTGYYCVYF 170 (518)
T ss_pred hhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEeccCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988877888999999999999999999
Q ss_pred EeeCCCCCceEEEEEEEEECCCCCCCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 015077 181 IACDPKLKGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMI 260 (413)
Q Consensus 181 ~~C~~~~~~~~~~g~v~f~N~~GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq~~I~avl~l~~~E~~ 260 (413)
.+|+++.++.+.+|+|+||||||||||+++|+||||++|+++|.+++++|+++|+|||||++|||+||++|++|+|+|++
T Consensus 171 ~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~a 250 (518)
T KOG2568|consen 171 ISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAETA 250 (518)
T ss_pred EeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeeccCcccceeeehHHHHHHHHHHHHhhhhcc
Q 015077 261 LWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDITEFVG 340 (413)
Q Consensus 261 ~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg~~~~kv~~l~v~yfias~~~~v~~~~~ 340 (413)
+||.||++.|.+|.+|++.++|+++++|+|+|++|+|+|+||||||||||+||+.+.|+..+|++|++++++.++++++|
T Consensus 251 v~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g 330 (518)
T KOG2568|consen 251 VFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIG 330 (518)
T ss_pred HHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 015077 341 TISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIAYEV 413 (413)
Q Consensus 341 ~~~d~s~~~~l~~vlpla~~~~vf~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~li~~vv~s~~f~~~e~ 413 (413)
+++|.++.+++|.++|+|++|++|++|||.||++|+|+||+|||++||+|||||+++++++|++|++|++||+
T Consensus 331 ~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~ 403 (518)
T KOG2568|consen 331 NISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVET 403 (518)
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888889999999999999999999999999999999999999999999999999999999999999984
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.2e-58 Score=451.31 Aligned_cols=243 Identities=38% Similarity=0.691 Sum_probs=229.2
Q ss_pred cCCCceEEEEEEeeCCCC----CceEEEEEEEEECCCCCCCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 015077 170 ITKTGMYNLFFIACDPKL----KGLVMSGKTIWKNPNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQ 245 (413)
Q Consensus 170 I~ktG~Y~v~~~~C~~~~----~~~~~~g~v~f~N~~GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq 245 (413)
|+|||+||+++++|+|+. ++.+++|+++|+||||||||+|+|++|+|++|+++|++++++|++.++||||+++|||
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999998763 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeeccCcccceeeehHHH
Q 015077 246 HCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLLGAT 325 (413)
Q Consensus 246 ~~I~avl~l~~~E~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg~~~~kv~~l~v~ 325 (413)
++|+++++++++|+++|+.+|++.|.+|.++.++.+++++++++|++++|+++|+||||||++||+|+++++|+.+++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCcc--eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 015077 326 YFLASELLDITEFVGTISDISGR--ARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVI 403 (413)
Q Consensus 326 yfias~~~~v~~~~~~~~d~s~~--~~l~~vlpla~~~~vf~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~li~~vv 403 (413)
|++++.+..+.+..+...|.+.. ..++.++|++++++++++||++||++|+++||+|||++||+|||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777766655554432 3588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc
Q 015077 404 ASVIWIAYE 412 (413)
Q Consensus 404 ~s~~f~~~e 412 (413)
++++|+.++
T Consensus 241 ~~~i~~~~~ 249 (295)
T PF06814_consen 241 FSRIFVVLS 249 (295)
T ss_pred HHHHHHHHH
Confidence 999998765
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-31 Score=266.04 Aligned_cols=238 Identities=21% Similarity=0.322 Sum_probs=206.9
Q ss_pred CeeeecCCCceEEEEEEeeCCCCCceEEEEEEEEEC---CCC---CCCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 015077 165 NVDVPITKTGMYNLFFIACDPKLKGLVMSGKTIWKN---PNG---YLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYW 238 (413)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~~~~~~~g~v~f~N---~~G---yLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r 238 (413)
.++|+++.+|.|.++|+||.|. +..++.+.++..| |.| ||||++++++..|..|+++|+..++.|.++++|++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~-~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPE-TKGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeecccc-ccceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 4689999999999999999876 6777888888765 677 99999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeeccCcccce
Q 015077 239 KDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSK 318 (413)
Q Consensus 239 ~~il~Iq~~I~avl~l~~~E~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg~~~~k 318 (413)
+.+++||..|.+++.++.+..++...+|+++.++|+ +++|.+..+++++.|+.+.|..+.+++.||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~-~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGT-VHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCc-eeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 999999999999999999999999999999999995 8999999999999999999999999999999999999999999
Q ss_pred eeehHH-HHHHHHHHHHhhhhcccc--cCCCcceehhhhHHHHHHHHHH--HHHHHHHHHHHHH-HHHHhHhHHHHHHHH
Q 015077 319 VLLLGA-TYFLASELLDITEFVGTI--SDISGRARLFLVLPVAFLDAFL--ILWIFTSLSKTLE-QLQAKRSSIKLDIYR 392 (413)
Q Consensus 319 v~~l~v-~yfias~~~~v~~~~~~~--~d~s~~~~l~~vlpla~~~~vf--~~WI~~sL~~Ti~-~Lk~~rq~~KL~mYr 392 (413)
+++.++ ++.+++.+..+....+.. +..++. .+|.+.++.||+++. ++|.+++|++|.+ |.|+.+|.+||.+||
T Consensus 281 v~miviplqvlania~Iv~dEte~~~q~~~tw~-~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfr 359 (440)
T KOG2569|consen 281 VLMIVIPLQVLANIASIVTDETEPLTQDWVTWN-QIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFR 359 (440)
T ss_pred EEEEEecHHHHHHhHheeecCCCcchhhhhhhh-heeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHH
Confidence 987643 355555544333332221 122222 467777888888876 9999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015077 393 KFSNALAVTVIAS 405 (413)
Q Consensus 393 ~f~~~li~~vv~s 405 (413)
+||.++++++-.+
T Consensus 360 qfyi~vi~yiyft 372 (440)
T KOG2569|consen 360 QFYIVVIGYIYFT 372 (440)
T ss_pred HHHhhhhhhhhhh
Confidence 9999999887654
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.24 E-value=2.1e-09 Score=104.68 Aligned_cols=204 Identities=17% Similarity=0.227 Sum_probs=141.8
Q ss_pred eEEEEEEEEECCC----CCCCcCCCcchhHHHHHHHHHHHHHHHHHHH--HhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 015077 190 LVMSGKTIWKNPN----GYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQ--YVRYWKDILQLQHCITAVITLGLFEMILWF 263 (413)
Q Consensus 190 ~~~~g~v~f~N~~----GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~--~~k~r~~il~Iq~~I~avl~l~~~E~~~~~ 263 (413)
++.+-++++.|+. -++|++|...+++|.++.++|.++.+.-... ..+.|+...++.+++++.+.+..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889996 5999999999999999999999988875443 356678899999999999999999888754
Q ss_pred HHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeeccCccc-ceeeehHHHHHHHHHHHHhhhhcccc
Q 015077 264 SEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLT-SKVLLLGATYFLASELLDITEFVGTI 342 (413)
Q Consensus 264 ~~y~~~N~~G~~~~~~~v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg~~~-~kv~~l~v~yfias~~~~v~~~~~~~ 342 (413)
..+..+-.+|.......+...++.++-+.+...|++++|.||.+.|+++.... .+...+.+++.+...+..+.++...
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~- 160 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFY- 160 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 44444434444445788999999999999999999999999999999998543 2333444445555544444422111
Q ss_pred cCCCc---ceehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 015077 343 SDISG---RARLFLVLPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFSNA 397 (413)
Q Consensus 343 ~d~s~---~~~l~~vlpla~~~~vf~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~ 397 (413)
.|... ...-..-.++..+=.+..+|-..++.+|+ +++|+..|.+-|.+|...
T Consensus 161 ~d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~---~~~~~~~k~~Fy~~f~~~ 215 (257)
T PF10192_consen 161 FDPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTI---SKEKDPEKRKFYLPFGII 215 (257)
T ss_pred CCcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHH
Confidence 11111 01112222333445555667667777764 456666888888888644
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=97.65 E-value=0.0035 Score=63.75 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=115.1
Q ss_pred CCC-CCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhh
Q 015077 202 NGY-LPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILWFSEYANFNNTGIRPVVIT 280 (413)
Q Consensus 202 ~Gy-Lpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq~~I~avl~l~~~E~~~~~~~y~~~N~~G~~~~~~~ 280 (413)
.++ .+.+|-.+.-+|..|.++|+++.++.....+ |+-.|.|...+.++....+...+.-+++..+-++|..-....
T Consensus 159 ft~~fS~deqnlie~fll~llvY~vL~~iq~~av~---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~ 235 (429)
T KOG4290|consen 159 FTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFF 235 (429)
T ss_pred cccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeec
Confidence 355 8899999999999999999999998888776 567888888888777777766655444444444444222345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccceeeccCcccceeeeh-HHHHHHHHHHHHhhhhcccc---c--CCCcceehhhh
Q 015077 281 TWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLGGLTSKVLLL-GATYFLASELLDITEFVGTI---S--DISGRARLFLV 354 (413)
Q Consensus 281 v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg~~~~kv~~l-~v~yfias~~~~v~~~~~~~---~--d~s~~~~l~~v 354 (413)
..+.++.-.-..-...|++..++||-|+||.-... +++..- .+.+...-.++..-+....+ . |.-..|.-.
T Consensus 236 ~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~-~wds~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwpG~-- 312 (429)
T KOG4290|consen 236 DAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS-RWDSPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWPGE-- 312 (429)
T ss_pred CHHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc-ccccchhhhhhhhhhhheeehhhcCceeeeechhhhhccchH--
Confidence 56677777777888899999999999999987642 222211 12211111111111111110 1 111123222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 015077 355 LPVAFLDAFLILWIFTSLSKTLEQLQAKRSSIKLDIYRKFS 395 (413)
Q Consensus 355 lpla~~~~vf~~WI~~sL~~Ti~~Lk~~rq~~KL~mYr~f~ 395 (413)
-+.+++.++.+|-..-|+++++.=+ .+.|.+-|-+|.
T Consensus 313 -~viilRii~a~wflielr~~ik~Eh---StkK~eFl~hfg 349 (429)
T KOG4290|consen 313 -VVIILRIIVAFWFLIELRVPIKLEH---STKKCEFLSHFG 349 (429)
T ss_pred -HHHHHHHHHHHHHHHHeeeehhhhh---HHHHHHHHHHhc
Confidence 2345788888998888888876433 344555555543
No 6
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=61.36 E-value=2.4 Score=39.42 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=79.9
Q ss_pred eeeecCCCceEEEEEEeeCCCCC--ceEEEEEEE----EECC----CCCCCcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 015077 166 VDVPITKTGMYNLFFIACDPKLK--GLVMSGKTI----WKNP----NGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYV 235 (413)
Q Consensus 166 ~~y~I~ktG~Y~v~~~~C~~~~~--~~~~~g~v~----f~N~----~GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~ 235 (413)
...-|++||-||+....-.-+.. +++..|... ..|. ..|.+..|.+-.- +++.+|.+-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggvl----------lflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGVL----------LFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCcee----------ehhHHHHHHHH
Confidence 35678999999998754321111 222222111 1122 2466666655332 24567999999
Q ss_pred hhccchhHHHHHHHHHHHHHHH-HHHHH-HHHhhhhccccCCcchhhhH--HHHHHHHHHHHHHHHHHHHHhcccceeec
Q 015077 236 RYWKDILQLQHCITAVITLGLF-EMILW-FSEYANFNNTGIRPVVITTW--VVTVGAVRKSLTRLLILCVSMGYGVVRPT 311 (413)
Q Consensus 236 k~r~~il~Iq~~I~avl~l~~~-E~~~~-~~~y~~~N~~G~~~~~~~v~--~~i~~a~k~t~s~~LlLlVsmGyGvVkp~ 311 (413)
.+.+-+.|-|+-+..-|.+... .++-. .-+|..-- ....--.++ ..+++.+|.-+-|+.++--++|.|+.|..
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvFss---ecikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTv 182 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSS---ECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTV 182 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHheeee---EEEEecccccHHHHHHHHHhhhhhhheeeecccccceeee
Confidence 9999999999877654433332 22221 22222100 000011222 35788999999999999999999998754
Q ss_pred cCcccc
Q 015077 312 LGGLTS 317 (413)
Q Consensus 312 Lg~~~~ 317 (413)
-.-.|.
T Consensus 183 pKylmI 188 (256)
T PF09437_consen 183 PKYLMI 188 (256)
T ss_pred cceEEE
Confidence 333343
No 7
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=58.54 E-value=42 Score=35.66 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=45.4
Q ss_pred CeeeecCCCceEEEEEEeeCCCC------------CceEEEEEEEEECC-CCCCCcCCCcchhHHHHHHHHHHHHHHHHH
Q 015077 165 NVDVPITKTGMYNLFFIACDPKL------------KGLVMSGKTIWKNP-NGYLPGRMAPLMNFYVYMSLAYVVLSVIWF 231 (413)
Q Consensus 165 ~~~y~I~ktG~Y~v~~~~C~~~~------------~~~~~~g~v~f~N~-~GyLpa~~~p~l~fYg~msi~Y~vl~~~W~ 231 (413)
|.+.+|+++|..--+-.+--... .......-|++.+| +.|.-. -.-.-|++|.|+-..+. +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~---~Ra~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKS---ERAVKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHH---HHHHHHHHHHHHHHHHH-HHH
Confidence 56778999998876654321110 01122455566655 233222 22347888888765543 333
Q ss_pred HHHhhhccchhHHHHHHHH
Q 015077 232 IQYVRYWKDILQLQHCITA 250 (413)
Q Consensus 232 ~~~~k~r~~il~Iq~~I~a 250 (413)
+-.. .++.++|+||.+-+
T Consensus 315 fE~~-~~~~iHpiQY~LVG 332 (430)
T PF06123_consen 315 FELL-SKLRIHPIQYLLVG 332 (430)
T ss_pred HHHH-hcCcccHHHHHHHH
Confidence 3333 36689999988755
No 8
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=49.91 E-value=2.7e+02 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhH
Q 015077 364 LILWIFTSLSKTLEQLQAKRSS 385 (413)
Q Consensus 364 f~~WI~~sL~~Ti~~Lk~~rq~ 385 (413)
+++|+...+-++.++++.++..
T Consensus 208 Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 208 YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred HHHHHHHHHHHHHHHhccccHH
Confidence 7889999999998888888875
No 9
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=43.47 E-value=1e+02 Score=24.74 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015077 360 LDAFLILWIF-TSLSKTLEQLQAKRSSIKLDIYRKFSNALAVTVIASVIWIA 410 (413)
Q Consensus 360 ~~~vf~~WI~-~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~li~~vv~s~~f~~ 410 (413)
+..+...|++ +++++.=|..+||+.. +|.-+...+.--=++||++++
T Consensus 20 V~~~~~~wi~~Ra~~~~DKT~~eRQa~----LyD~lmi~ImtIPILSFA~m~ 67 (72)
T PF13268_consen 20 VLLVSGIWILWRALRKKDKTAKERQAF----LYDMLMIAIMTIPILSFAFMG 67 (72)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445567874 4444444446665543 666666666666678898876
No 10
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=39.80 E-value=3.3e+02 Score=25.65 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=11.6
Q ss_pred eehhhhHHHHHHHH
Q 015077 349 ARLFLVLPVAFLDA 362 (413)
Q Consensus 349 ~~l~~vlpla~~~~ 362 (413)
|..+.++|+..|++
T Consensus 157 ~l~~ml~pLl~CNA 170 (180)
T PF14089_consen 157 WLYLMLFPLLACNA 170 (180)
T ss_pred cHHHHHHHHHHHHH
Confidence 67788889999887
No 11
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=39.42 E-value=25 Score=36.72 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=49.5
Q ss_pred EEEEEEEEC--------CCCCCCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 015077 192 MSGKTIWKN--------PNGYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCI 248 (413)
Q Consensus 192 ~~g~v~f~N--------~~GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq~~I 248 (413)
+.-.+.|.- ++|++.+.+.|++-||-.+.++..-+...|+..+.+.+.++.++|+..
T Consensus 327 i~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~ 391 (440)
T KOG2569|consen 327 ILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLS 391 (440)
T ss_pred EeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHH
Confidence 445666776 799999999999999999999988899999999999888999999654
No 12
>CHL00043 cemA envelope membrane protein
Probab=37.38 E-value=28 Score=34.51 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=27.2
Q ss_pred hhhhcccccCCCcceehhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015077 335 ITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKTL 376 (413)
Q Consensus 335 v~~~~~~~~d~s~~~~l~~vlpla~~~~vf~~WI~~sL~~Ti 376 (413)
+.++.|-.++..-...+...+|+. +|++|=+|||+.|++..
T Consensus 209 i~~hfGl~~n~~~I~lfVatfPVi-LDtiFKYWIFRyLNRiS 249 (261)
T CHL00043 209 IYKHFGFAHNDQIISLLVSTFPVI-LDTIFKYWIFRYLNRVS 249 (261)
T ss_pred HHHhcCCCcccchHHHHHHhhhHH-HHHHHHHHHHhhccCCC
Confidence 446666544422222345667988 69999999999998643
No 13
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=36.27 E-value=26 Score=34.10 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=27.7
Q ss_pred hhhhcccccCCCcceehhhhHHHHHHHHHHHHHHHHHHHHH
Q 015077 335 ITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKT 375 (413)
Q Consensus 335 v~~~~~~~~d~s~~~~l~~vlpla~~~~vf~~WI~~sL~~T 375 (413)
+.++.|-.++......+...+|+. +|++|=+|||+.|++.
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPVi-LDt~fKyWIFryLnri 217 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPVI-LDTIFKYWIFRYLNRI 217 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhHH-HHHHHHHhhhcccCCC
Confidence 446666544433233456677998 5999999999998864
No 14
>COG4393 Predicted membrane protein [Function unknown]
Probab=33.77 E-value=5.6e+02 Score=26.61 Aligned_cols=33 Identities=0% Similarity=0.021 Sum_probs=24.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015077 375 TLEQLQAKRSSIKLDIYRKFSNALAVTVIASVI 407 (413)
Q Consensus 375 Ti~~Lk~~rq~~KL~mYr~f~~~li~~vv~s~~ 407 (413)
+...+..||+.+|.+.-+|+.-...+++++++.
T Consensus 230 ~~~aI~krkk~a~~~n~~rl~sl~f~s~lvvf~ 262 (405)
T COG4393 230 KNNAILKRKKAALKNNKHRLLSLAFFSILVVFS 262 (405)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444577788888888888887777777777665
No 15
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=33.67 E-value=3.4e+02 Score=24.05 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred EEEECCCCCCCcCCC-cchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 015077 196 TIWKNPNGYLPGRMA-PLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLGLFEMILW 262 (413)
Q Consensus 196 v~f~N~~GyLpa~~~-p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq~~I~avl~l~~~E~~~~ 262 (413)
.+.+|.-|-+-|--. -.....|..+.+..++.+.|...++++++.-.+..+++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345777764333311 1234677888888889999999999988766667777776666666655554
No 16
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=31.97 E-value=38 Score=35.78 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=27.0
Q ss_pred HhhhhcccccCCCcceehhhhHHHHHHHHHHHHHHHHHHHHH
Q 015077 334 DITEFVGTISDISGRARLFLVLPVAFLDAFLILWIFTSLSKT 375 (413)
Q Consensus 334 ~v~~~~~~~~d~s~~~~l~~vlpla~~~~vf~~WI~~sL~~T 375 (413)
.+.+|+|-.++-.-...+...+||. +|++|=+|||+.|++.
T Consensus 369 ~i~~HfGl~~n~~~I~lFVaTfPVi-LDTiFKYWIFRyLNRi 409 (422)
T PRK02507 369 GIARHFGLPENRNFIFLFIATFPVI-LDTIFKYWIFRYLNRI 409 (422)
T ss_pred HHHHhcCCCcccchHHHHHhhhhHH-HHHHHHHHHHhhccCC
Confidence 3456666544322222345667988 6999999999998864
No 17
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=28.60 E-value=71 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015077 353 LVLPVAFLDAFLILWIFTSLSKTLEQLQ 380 (413)
Q Consensus 353 ~vlpla~~~~vf~~WI~~sL~~Ti~~Lk 380 (413)
.++|++++.++||+|++++-++--++.+
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~~ 32 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAHK 32 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHHHH
Confidence 4567777788889888876655544443
No 18
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=26.86 E-value=7.3e+02 Score=25.75 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 015077 360 LDAFLILWIFTSLSKTLEQLQAKRSS-IKLDIYRKFSNALAVTVIASVIWIA 410 (413)
Q Consensus 360 ~~~vf~~WI~~sL~~Ti~~Lk~~rq~-~KL~mYr~f~~~li~~vv~s~~f~~ 410 (413)
..+-|+++=...+.+.+.+++.++-. ..-..+|-+...+++..+++.+|+-
T Consensus 186 ~LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i~ 237 (367)
T PF09971_consen 186 FLAPFFIIGGITLFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFIY 237 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHHH
Confidence 34555444444555666666555541 1122234455666667777766653
No 19
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.64 E-value=1e+02 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015077 351 LFLVLPVAFLDAFLILWIFTSLSKTLEQL 379 (413)
Q Consensus 351 l~~vlpla~~~~vf~~WI~~sL~~Ti~~L 379 (413)
+..++|+.++..+||++++++-++--++.
T Consensus 18 ~~~ll~lvii~~i~yf~~~RpqkK~~k~~ 46 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRPQQKRQKEH 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45566888888888888776655544433
No 20
>PLN03223 Polycystin cation channel protein; Provisional
Probab=25.62 E-value=1.5e+02 Score=36.05 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-h-HHHHHHHHHHHHH-----HHHHHHHHHHhh
Q 015077 359 FLDAFLILWIFTSLSKTLEQLQAKR-S-SIKLDIYRKFSNA-----LAVTVIASVIWI 409 (413)
Q Consensus 359 ~~~~vf~~WI~~sL~~Ti~~Lk~~r-q-~~KL~mYr~f~~~-----li~~vv~s~~f~ 409 (413)
.+..+|+++|+..+-+.+++++..| + -.+++=|+.+||. +++++.+++.|+
T Consensus 1177 acEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1177 AMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4688888999999988888876543 2 2347779999987 344455555554
No 21
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=24.55 E-value=1e+02 Score=24.89 Aligned_cols=25 Identities=8% Similarity=0.333 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 015077 353 LVLPVAFLDAFLILWIFTSLSKTLE 377 (413)
Q Consensus 353 ~vlpla~~~~vf~~WI~~sL~~Ti~ 377 (413)
.++|+.+...++|+|.+++-++--+
T Consensus 4 ~li~lv~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 4 MLIPLVIIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheecHHHHHHH
Confidence 4567777888888887776554333
No 22
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=24.29 E-value=1e+02 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015077 382 KRSSIKLDIYRKFSNALAVTVIASVIWIAY 411 (413)
Q Consensus 382 ~rq~~KL~mYr~f~~~li~~vv~s~~f~~~ 411 (413)
-+++.|-+.+-.|++++++.|++||+++.+
T Consensus 206 ve~y~ksk~s~wf~~~miI~v~~sFVsMil 235 (244)
T KOG2678|consen 206 VEKYDKSKLSYWFYITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 346778788999999999999999998754
No 23
>PTZ00121 MAEBL; Provisional
Probab=23.66 E-value=33 Score=41.50 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=52.7
Q ss_pred EEEeeccccccccccCCCceeeeeChh---hhccCCCCC-CCEEecCC---CCCCCCceEEeEeeccCcccccCCCeeee
Q 015077 97 VIFEAADRNNIGGSAYGGQRSICCTPD---LAKLEGCKQ-GEVIRMPS---ATDINWPIVLNVQFSGNYLSTKMDNVDVP 169 (413)
Q Consensus 97 vIfe~~D~~~iG~~~~~g~~~~~C~~~---~~~~g~C~~-g~fIi~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~y~ 169 (413)
.=|+|.|.+++|.........-+|... -.-.|.|.. |+.|+-.- .++-.|...+.+-|.+..+ ..+...|
T Consensus 54 ~kydi~~~kn~~~~~~~~~~~~~Cpn~~~~~~y~GsCPnYGKtf~m~l~~~eyne~flNEI~~g~Lnkk~---~~~iEIp 130 (2084)
T PTZ00121 54 FKYDIDDGDNLDFEGNEEEKSGICPDHGAEEMYKGGCPDYGKTFLMDFEDDEYNEEFLDEISFGFLNKKL---KLPIEIP 130 (2084)
T ss_pred eeeeeecCcccccccccchhcccCCCCCccceecCCCCCccceEEEecccchhhHHHHHHHhhccccccc---Ccceeee
Confidence 458888888998654444455556542 233589997 88776532 2222354444444443222 2356788
Q ss_pred cCCCc--eEEEEEEeeC
Q 015077 170 ITKTG--MYNLFFIACD 184 (413)
Q Consensus 170 I~ktG--~Y~v~~~~C~ 184 (413)
+.++| ||.=+|.+|+
T Consensus 131 ~~~sGlAMyqGlf~~CP 147 (2084)
T PTZ00121 131 LEKSGLAMYQGLFKRCP 147 (2084)
T ss_pred ccchhHHHHhchhhcCC
Confidence 88888 6888899995
No 24
>PRK06265 cobalt transport protein CbiM; Validated
Probab=22.91 E-value=4.3e+02 Score=24.76 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 015077 220 SLAYVVLSVIWFIQYVRYWKDILQLQHCITAVITLG 255 (413)
Q Consensus 220 si~Y~vl~~~W~~~~~k~r~~il~Iq~~I~avl~l~ 255 (413)
...|.+....+.+..+|-+.+-.|.|-+.++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~f~~ 49 (199)
T PRK06265 14 AGGWVIAAAGVALGLRRLDEERIPLVALLAAAFFVA 49 (199)
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 344444444555555565556777776666544433
No 25
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.53 E-value=1.6e+02 Score=24.40 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=30.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 015077 210 APLMNFYVYMSLAYVVLSVIWFIQYVRYWKDILQLQ 245 (413)
Q Consensus 210 ~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~il~Iq 245 (413)
-|.++-|..+++...++|++|+..++-...++.|++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~ 62 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIP 62 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Confidence 477889999999999999999999988777766655
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.35 E-value=3.3e+02 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhH
Q 015077 352 FLVLPVAFLDAFL---ILWIFTSLSKTLEQLQAKR 383 (413)
Q Consensus 352 ~~vlpla~~~~vf---~~WI~~sL~~Ti~~Lk~~r 383 (413)
+-.+|.++-|... ++|++..+.+.+++++.++
T Consensus 18 ~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~k~~ 52 (318)
T PF12725_consen 18 FGWFPFSVGDILYYLLILFLLYYLIRLIRKIFKKK 52 (318)
T ss_pred ccCcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345555555444 4445555555555444333
No 27
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.84 E-value=1.1e+03 Score=25.75 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCCcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc---------hhHHHHHHHHHHHHHHHHHH
Q 015077 203 GYLPGRMAPLMNFYVYMSLAYVVLSVIWFIQYVRYWKD---------ILQLQHCITAVITLGLFEMI 260 (413)
Q Consensus 203 GyLpa~~~p~l~fYg~msi~Y~vl~~~W~~~~~k~r~~---------il~Iq~~I~avl~l~~~E~~ 260 (413)
+||||- +.+-..+...-+++|..|.-+-.+-++. ++|+-.-+.++.+-+.=|..
T Consensus 498 ~hLpgv----l~L~lLlpl~ill~G~~wsRLp~~~~~~lPaGW~a~iLiPV~l~~galaLwlsp~Le 560 (733)
T COG4590 498 SHLPGV----LALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELE 560 (733)
T ss_pred hhhhHH----HHHHHHhHHHHHHHHHHHhhccHHHhccCCCcchhhHHHHHHHHHHHHHHHhChHhh
Confidence 566653 2222333344455666666554443222 36777666666655544443
No 28
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.47 E-value=1.6e+02 Score=25.47 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 015077 352 FLVLPVAFLDAFLILWIFTSLS 373 (413)
Q Consensus 352 ~~vlpla~~~~vf~~WI~~sL~ 373 (413)
..++|+.++.++||+++++.=.
T Consensus 5 ~~ll~lv~i~~i~yF~~iRPQk 26 (109)
T PRK05886 5 VLFLPFLLIMGGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHHHHHHHHHHHccHHH
Confidence 3456777777788777655433
No 29
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=20.13 E-value=1e+02 Score=26.67 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 015077 259 MILWFSEY 266 (413)
Q Consensus 259 ~~~~~~~y 266 (413)
.+.|...|
T Consensus 115 liIw~~~y 122 (136)
T PF11457_consen 115 LIIWLIFY 122 (136)
T ss_pred HHHHHHHH
Confidence 34453333
No 30
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.10 E-value=9.1e+02 Score=24.39 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhh
Q 015077 211 PLMNFYVYMSLAYVVLSVIWFIQYVR 236 (413)
Q Consensus 211 p~l~fYg~msi~Y~vl~~~W~~~~~k 236 (413)
-.|.+...-++.+++.|++|+.++-.
T Consensus 20 ~~L~~Si~~tvi~A~~GIi~GL~~gS 45 (314)
T COG3965 20 LYLRISIAGTVIFAAFGIIWGLLSGS 45 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566667777788888888887644
Done!