Query 015077
Match_columns 413
No_of_seqs 196 out of 345
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eiy_A Adenosine receptor A2A/ 24.0 4.5E+02 0.015 24.6 18.7 28 352-380 210-237 (447)
2 2rdd_B UPF0092 membrane protei 22.6 91 0.0031 20.4 3.5 24 353-376 5-28 (37)
3 3eml_A Human adenosine A2A rec 12.7 8.5E+02 0.029 22.9 17.1 22 353-375 201-222 (488)
4 1u19_A Rhodopsin; G protein-co 12.5 7.3E+02 0.025 22.0 9.6 20 354-374 214-233 (349)
5 1rja_A Tyrosine-protein kinase 12.1 2.1E+02 0.0073 22.0 4.0 42 130-179 23-66 (100)
6 3rko_A NADH-quinone oxidoreduc 12.0 6.7E+02 0.023 21.4 8.7 60 242-313 64-124 (147)
7 2j4t_A Angiogenin-4; angiogene 11.7 49 0.0017 28.4 0.0 22 293-314 4-25 (144)
8 3odu_A C-X-C chemokine recepto 11.2 9.6E+02 0.033 22.7 11.4 21 353-374 218-238 (502)
9 1aly_A CD40 ligand; cytokine, 11.2 2.5E+02 0.0086 23.6 4.4 36 168-203 46-85 (146)
10 4a17_O RPL19, 60S ribosomal pr 10.6 1.9E+02 0.0064 26.0 3.4 32 366-398 94-127 (185)
No 1
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=23.98 E-value=4.5e+02 Score=24.61 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015077 352 FLVLPVAFLDAFLILWIFTSLSKTLEQLQ 380 (413)
Q Consensus 352 ~~vlpla~~~~vf~~WI~~sL~~Ti~~Lk 380 (413)
..++|+.+ ..++|..|+..+.+..++.+
T Consensus 210 ~~~lP~~i-i~~~y~~I~~~l~~~~~~~~ 237 (447)
T 4eiy_A 210 CVLVPLLL-MLGVYLRIFLAARRQLADLE 237 (447)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Confidence 34678775 67778888888888766544
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.63 E-value=91 Score=20.42 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 015077 353 LVLPVAFLDAFLILWIFTSLSKTL 376 (413)
Q Consensus 353 ~vlpla~~~~vf~~WI~~sL~~Ti 376 (413)
.++|+.+..++||+.++++=.+--
T Consensus 5 ~~l~~v~~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Confidence 456777777888888776655443
No 3
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=12.68 E-value=8.5e+02 Score=22.89 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 015077 353 LVLPVAFLDAFLILWIFTSLSKT 375 (413)
Q Consensus 353 ~vlpla~~~~vf~~WI~~sL~~T 375 (413)
.++|+.+ ..++|+.|+..+.+.
T Consensus 201 ~~~P~~i-i~~~y~~I~~~l~~~ 222 (488)
T 3eml_A 201 VLVPLLL-MLGVYLRIFLAARRQ 222 (488)
T ss_dssp THHHHHH-HHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4567764 666788888877644
No 4
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=12.50 E-value=7.3e+02 Score=22.05 Aligned_cols=20 Identities=10% Similarity=0.193 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 015077 354 VLPVAFLDAFLILWIFTSLSK 374 (413)
Q Consensus 354 vlpla~~~~vf~~WI~~sL~~ 374 (413)
++|+.+ ..++|..|+..+++
T Consensus 214 ~ip~~i-i~~~y~~i~~~l~~ 233 (349)
T 1u19_A 214 IIPLIV-IFFCYGQLVFTVKE 233 (349)
T ss_dssp HHHHHH-HHHHHTTTTTSSCS
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 445553 44555556555543
No 5
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=12.10 E-value=2.1e+02 Score=21.97 Aligned_cols=42 Identities=19% Similarity=0.026 Sum_probs=24.8
Q ss_pred CCCCCEEecCCCCCCCCceEEeEeeccCcccccCCCeeeecC--CCceEEEE
Q 015077 130 CKQGEVIRMPSATDINWPIVLNVQFSGNYLSTKMDNVDVPIT--KTGMYNLF 179 (413)
Q Consensus 130 C~~g~fIi~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~y~I~--ktG~Y~v~ 179 (413)
+.+|.|+++++.+++.. ..+.+.. +....+|.|. ++|.|++.
T Consensus 23 ~~~G~FLVR~S~~~~g~-~~LSv~~-------~~~v~H~~I~~~~~g~~~l~ 66 (100)
T 1rja_A 23 NATGAFLIRVSEKPSAD-YVLSVRD-------TQAVRHYKIWRRAGGRLHLN 66 (100)
T ss_dssp CSSCCEEEEECSSSSSC-EEEEECT-------TSSCEEEEEEECSSSCEEEE
T ss_pred CCCCEEEEEeCCCCCCC-EEEEEEE-------CCEEEEEEEEEcCCCcEEEC
Confidence 67899999987765542 1222211 1234567775 47887754
No 6
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.00 E-value=6.7e+02 Score=21.35 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcccceeeccC
Q 015077 242 LQLQHCITAVITLGL-FEMILWFSEYANFNNTGIRPVVITTWVVTVGAVRKSLTRLLILCVSMGYGVVRPTLG 313 (413)
Q Consensus 242 l~Iq~~I~avl~l~~-~E~~~~~~~y~~~N~~G~~~~~~~v~~~i~~a~k~t~s~~LlLlVsmGyGvVkp~Lg 313 (413)
..+|+|+.+++.+.. +|.++-+---...+..| + ...-..+.|+++|++|+=|---+=.|.
T Consensus 64 FsirFfLiAilFlIFDvEi~~L~Pwa~~~~~~~-----~-------~~~~~~~~Fl~iL~~Gl~yEW~~GaL~ 124 (147)
T 3rko_A 64 LSAKFYLVAMFFVIFDVEALYLFAWSTSIRESG-----W-------VGFVEAAIFIFVLLAGLVYLVRIGALD 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTH-----H-------HHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----H-------HHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 589999988766555 68776432111111111 1 111224667777888776655444554
No 7
>2j4t_A Angiogenin-4; angiogenesis, endonuclease, differentiation, cancer, nuclease, hydrolase, ribonuclease, developmental protein; 2.02A {Mus musculus}
Probab=11.69 E-value=49 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccceeeccCc
Q 015077 293 LTRLLILCVSMGYGVVRPTLGG 314 (413)
Q Consensus 293 ~s~~LlLlVsmGyGvVkp~Lg~ 314 (413)
..+.|+|++.+|.|.+.|+|++
T Consensus 4 ~~~~llll~ll~l~~~~~s~~~ 25 (144)
T 2j4t_A 4 SPCPLLLVFVLGLVVIPPTLAQ 25 (144)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhcccccccc
Confidence 4566788888899999999975
No 8
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=11.23 E-value=9.6e+02 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 015077 353 LVLPVAFLDAFLILWIFTSLSK 374 (413)
Q Consensus 353 ~vlpla~~~~vf~~WI~~sL~~ 374 (413)
.++|+.+ ..++|..|+..+.+
T Consensus 218 ~~~p~~i-i~~~y~~I~~~l~~ 238 (502)
T 3odu_A 218 LILPGIV-ILSCYCIIISKLSH 238 (502)
T ss_dssp THHHHHH-HHHHHHHHHHHGGG
T ss_pred HHHHHHH-HHHHHHHHHHHHhh
Confidence 4567664 56678888887766
No 9
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Probab=11.20 E-value=2.5e+02 Score=23.57 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=21.0
Q ss_pred eecCCCceEEEEEEeeCCC----CCceEEEEEEEEECCCC
Q 015077 168 VPITKTGMYNLFFIACDPK----LKGLVMSGKTIWKNPNG 203 (413)
Q Consensus 168 y~I~ktG~Y~v~~~~C~~~----~~~~~~~g~v~f~N~~G 203 (413)
..|+++|+|.||...+... ..+..+.-.+.-+|+++
T Consensus 46 L~V~~~GlY~VYsQV~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T 1aly_A 46 LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEECCCeEEEEEEEEEEecCCCCCCCCCEEEEEEEeCCCC
Confidence 6899999999987655311 12234554454455443
No 10
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=10.57 E-value=1.9e+02 Score=26.03 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=25.7
Q ss_pred HHH--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 015077 366 LWI--FTSLSKTLEQLQAKRSSIKLDIYRKFSNAL 398 (413)
Q Consensus 366 ~WI--~~sL~~Ti~~Lk~~rq~~KL~mYr~f~~~l 398 (413)
.|+ ++.|++.++.+++.+.+-+ .+|+.||...
T Consensus 94 ~WmrRiR~LRrlLr~~Re~~kID~-h~Yr~LY~ka 127 (185)
T 4a17_O 94 LWMRRQRVLRRLLRKYRAAKKIDK-HQYHEFYLGS 127 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHh
Confidence 375 7889999999999888776 6799998764
Done!