BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015078
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 17/211 (8%)
Query: 132 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 190
Q F Y +VIDFE+TC D K+ + QEIIEFP+V++++ TGQ+++ FQ YV+P + +LS+
Sbjct: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91
Query: 191 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLEN-KGIKNTNFAV---------------VT 234
FC +LTGI+Q QVD GV L L + KW+ + KN FA VT
Sbjct: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151
Query: 235 WSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 294
WS+WD V LE EC+ K++ KP + N WI+L+ + + L A++ G+ + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211
Query: 295 AHCGLDDAKNTARLLALLMHRGFKFSITNSL 325
H GLDD++NTA L ++ G IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 365 PSCFCGVKSSKGMVRKPGPKQGSVFFGC--GNWTVTRGARCHFFEWAFT 411
P C CG +S + +V GP G VF+ C G + R C +F+W T
Sbjct: 595 PLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKC-CGYFKWEQT 642
>sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
Length = 687
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 16/210 (7%)
Query: 132 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 191
Q F+Y ++IDFE+TC KD QEIIEFP+V+++ G++E+ F TYV+P + +LSDF
Sbjct: 33 QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDF 92
Query: 192 CKDLTGIQQIQVDRGVTLSEALLRHDKWLEN----KGI------------KNTNFAVVTW 235
C +LTGI Q QVD GV L L + + W++ KGI ++ A VTW
Sbjct: 93 CTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTW 152
Query: 236 SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 295
S+WD V L ECR K++ KP N WI+L+ + + L A++ G+ + GR
Sbjct: 153 SDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE 212
Query: 296 HCGLDDAKNTARLLALLMHRGFKFSITNSL 325
H GLDD++NTA+L + ++ G IT SL
Sbjct: 213 HSGLDDSRNTAKLASRMICDGCVMKITKSL 242
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 365 PSCFCGVKSSKGMVRKPGPKQGSVFFGCG----NWTVTRGARCHFFEWAFT 411
P C CG ++ + V GP QG F+ C N +G C +F+W T
Sbjct: 593 PMCNCGRRAKRLTVSNAGPNQGKAFYTCSVKKRNEENKKG--CDYFKWEQT 641
>sp|Q5BKS4|ERI2_MOUSE ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1
Length = 688
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 17/211 (8%)
Query: 132 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 190
Q + Y +V+DFE+TC D K+ EIIEFP+V++++ TG++E+ F YV+P + +LS+
Sbjct: 32 QLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSE 91
Query: 191 FCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAV---------------VT 234
FC +LTGI+Q+QVD GV L L + KW+ + T +FA VT
Sbjct: 92 FCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVT 151
Query: 235 WSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 294
WS+WD V LE ECR K++ KP + N WI+L+ + + L A++ G+ + GR
Sbjct: 152 WSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGR 211
Query: 295 AHCGLDDAKNTARLLALLMHRGFKFSITNSL 325
H GLDD++NTA L ++ G IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 365 PSCFCGVKSSKGMVRKPGPKQGSVFFGC--GNWTVTRGARCHFFEWAFT 411
P C CG +S + +V GP G F+ C G + R C +F+W T
Sbjct: 592 PLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKC-CGYFKWEQT 639
>sp|A6QLH5|ERI3_BOVIN ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1
Length = 337
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 10/202 (4%)
Query: 128 DFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQL 187
F PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+ F YV+P +
Sbjct: 137 SFPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQ 195
Query: 188 LSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VVTWSNWDCRVMLE 245
L+ FC +LTGI Q VD +L + L R D+W+ +G+ + N VT +WD +VML
Sbjct: 196 LTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLP 255
Query: 246 SECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAWQ--GRAHCGLDD 301
+C++ + YF +WINLK + G C K ++M GL+ Q GR H G+DD
Sbjct: 256 GQCQYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSLQHIGRPHSGIDD 312
Query: 302 AKNTARLLALLMHRGFKFSITN 323
KN A ++ L +RGF F T+
Sbjct: 313 CKNIANIMKTLAYRGFIFKQTS 334
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 10/202 (4%)
Query: 128 DFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQL 187
F PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+ F YV+P +
Sbjct: 137 SFPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQ 195
Query: 188 LSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VVTWSNWDCRVMLE 245
L+ FC +LTGI Q VD +L + L R D+W+ +G+ + N VT +WD +VML
Sbjct: 196 LTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLP 255
Query: 246 SECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAWQ--GRAHCGLDD 301
+C++ + YF +WINLK + G C K ++M GL+ Q GR H G+DD
Sbjct: 256 GQCQYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSLQHIGRPHSGIDD 312
Query: 302 AKNTARLLALLMHRGFKFSITN 323
KN A ++ L +RGF F T+
Sbjct: 313 CKNIANIMKTLAYRGFIFKQTS 334
>sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1
Length = 337
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 129 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLL 188
F PQ + YF+V+DFEATCDK + +PQEIIEFP + ++ T ++E+ F YV+P + L
Sbjct: 138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQL 196
Query: 189 SDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFA--VVTWSNWDCRVMLES 246
+ FC +LTGI Q VD +L + L R D+W+ +G+ + N VT +WD +VML
Sbjct: 197 TPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPG 256
Query: 247 ECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEA-VEM-AGLAWQ--GRAHCGLDDA 302
+C + + YF +WINLK + G C K ++M GL+ Q GR H G+DD
Sbjct: 257 QCHYLGLPVADYFKQWINLKKAYSFAMG---CWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313
Query: 303 KNTARLLALLMHRGFKFSITN 323
KN A ++ L +RGF F T+
Sbjct: 314 KNIANIMKTLAYRGFIFKQTS 334
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
Query: 128 DFQPQEFQYFVVIDFEATCDKDKNP-YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQ 186
+F + Y +IDFEATC++ P + EIIEFP V++++ T ++E FQ YVRP N
Sbjct: 121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT 180
Query: 187 LLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLE 245
LSDFC LTGI Q QVDR T + L + W++ K + ++++T +WD L
Sbjct: 181 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN 240
Query: 246 SECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAK 303
+C+ ++ PP+ +WIN++ + + R K + E G+ + GR HCGLDD+K
Sbjct: 241 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK 300
Query: 304 NTARLLALLMHRGFKFSITNSL 325
N AR+ ++ G + I +
Sbjct: 301 NIARIAVRMLQDGCELRINEKM 322
>sp|Q502M8|ERI2_DANRE ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1
Length = 555
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 132 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 191
Q F + ++IDFE+TC ++K+ QEIIEFP+V++S +G +E+ F +YV+P +LS F
Sbjct: 30 QRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAF 89
Query: 192 CKDLTGIQQIQVDRGVTLSEALLRHDKWL----ENKGI-----------KNTNFAVVTWS 236
C +LTGI Q QVD L L R +WL E +G+ A VTWS
Sbjct: 90 CTELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWS 149
Query: 237 NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAH 296
+WD V L EC+ K++ P WI+L+ + + L+ A+ G+ + GR H
Sbjct: 150 DWDLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEFTGREH 209
Query: 297 CGLDDAKNTARLLALLMHRGFKFSITN 323
GL DA+NTA L +M G + SIT+
Sbjct: 210 SGLVDARNTALLAQRMMTDGCQLSITS 236
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 356 LQNSIFQYHPSCFCGVKSSKGMVRKPGPKQGSVFFGC-GNWTVTRGARCHFFEW 408
L+ + P C CG ++ + V GP G VF+ C + T C FF+W
Sbjct: 477 LKQKVKVTSPLCVCGRRARRLTVGNGGPNHGRVFYCCPRRRSNTHTHTCDFFQW 530
>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2
Length = 345
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 134 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 191
+ Y +IDFEATC+ + NP + EIIEFP V++++ T ++E FQ YVRP N LS+F
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEF 181
Query: 192 CKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLESECRF 250
C LTGI Q QVDR + L + +W+++K + + ++T +WD L +CR
Sbjct: 182 CIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQCRL 241
Query: 251 KKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAKNTARL 308
++ P + +WIN++ + + R K + E G+ + GR H GLDD+KN AR+
Sbjct: 242 SRLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARI 301
Query: 309 LALLMHRGFKFSITNSLM 326
++ G + I ++
Sbjct: 302 AVRMLQDGCELRINEKIL 319
>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1
Length = 345
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 134 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 191
+ Y +IDFEATC+ + NP + EIIEFP V++++ + ++E FQ YVRP N LS+F
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEF 181
Query: 192 CKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNT-NFAVVTWSNWDCRVMLESECRF 250
C LTGI Q QVDR + L + +W+++K + + ++T +WD L +C+
Sbjct: 182 CIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQCQL 241
Query: 251 KKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAV--EMAGLAWQGRAHCGLDDAKNTARL 308
++ P + +WIN++ + + R K + E G+ + GR H GLDD+KN AR+
Sbjct: 242 SRLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIARI 301
Query: 309 LALLMHRGFKFSITNSL 325
++ G + I L
Sbjct: 302 AVRMLQDGCELRINEKL 318
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 134 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCK 193
F Y + IDFE TC + YP EIIE P+V++ ++ + F+TYVRP N LS+FC
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 194 DLTGIQQIQVDRGVTLSEALLRHDKWLE--NKGIKNTNFAVVTWSNWDCRVMLESECRFK 251
T I Q VD EAL R W+ N G KN+ FA VT D ++ +C
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 252 KIWKPPYFNRWINLKVPFHEVFGGV-----RCNLKEAVEMAGLAWQGRAHCGLDDAKNTA 306
I P F +IN+K F E F G+ + ++ +E L++ G H GLDDA N A
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 307 RLLALLMHRGFKFSITNSLMWQTNDGS 333
+ +M + I ++ N S
Sbjct: 328 AIAIQMMKLKIELRINQKCSYKENQRS 354
>sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140
OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
Length = 337
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 130 QPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPT--CNQL 187
+ QEF +F+VID E EI+EFP +IV + T ++ F +VRPT Q
Sbjct: 122 KSQEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQA 172
Query: 188 LSDFCKDL---TGIQQIQVDRGVTLSEA-------LLRHDKWLENKGIKNTNFAVVTWSN 237
++ + + G+ ++ D + + L HD W ++ + A VT N
Sbjct: 173 INKYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAFVTCGN 232
Query: 238 WDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHC 297
WD + + +C I PPYF WINLK + +G + + G+ G H
Sbjct: 233 WDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHL 292
Query: 298 GLDDAKNTARLLALLMHRGFKFSIT 322
G+DD KN R++ ++ G +T
Sbjct: 293 GIDDTKNITRVVQRMLSEGAVLKLT 317
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 23/230 (10%)
Query: 134 FQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFC 192
+Y +++D EATC++ + EIIE P ++ + + F +YVRP+ N LSD+C
Sbjct: 79 LRYLLIVDVEATCEEGCGFSFENEIIELPCLLFDLIEKSIIDEFHSYVRPSMNPTLSDYC 138
Query: 193 KDLTGIQQIQVDRGVTLSEA-------LLRHDKWLEN-----------KGIKNT---NFA 231
K LTGIQQ VD+ S+ L +H L K + T N+A
Sbjct: 139 KSLTGIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWA 198
Query: 232 VVTWSNWDCRVMLESECRFKKIWKPPYFN-RWINLKVPFHEVFGGVRCNLKEAVEMAGLA 290
WD L + ++ K+ P + +++++ + +V+ R N+ +E GL
Sbjct: 199 WACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQ 258
Query: 291 WQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGSLTWNQFP 340
++G H G+DDA+N +R++ + +F M +G + +P
Sbjct: 259 FEGSEHRGIDDARNLSRIVKKMCSENVEFECNRWWMEYEKNGWIPNRSYP 308
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 9/206 (4%)
Query: 129 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQL--EACFQTYVRPTCNQ 186
+Q F +++DFE T D YP E+I+F V ++ + F YV+P N+
Sbjct: 3 YQHCPFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNR 62
Query: 187 LLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLES 246
L+ C D TGI Q +D T + +WL G++ FA V S D + +
Sbjct: 63 TLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQY 122
Query: 247 ECRFKKIWKPPYFNRWINLKVPFHEVFG-------GVRCNLKEAVEMAGLAWQGRAHCGL 299
+ + I P +F ++INL F N+ + E L GRAH +
Sbjct: 123 QMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAM 182
Query: 300 DDAKNTARLLALLMHRGFKFSITNSL 325
DD N A +L +++ G K ++ L
Sbjct: 183 DDCLNIATILQRMINMGAKVTVNELL 208
>sp|O05231|KAPD_BACSU Probable 3'-5' exonuclease KapD OS=Bacillus subtilis (strain 168)
GN=kapD PE=3 SV=1
Length = 205
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 137 FVVIDFEATCDKDK----NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFC 192
++IDFE T K N +P EIIE + IV S+ ++ F +YVRP L+ C
Sbjct: 6 LLIIDFEFTMPDGKYSPQNFFP-EIIE--AGIVKSIDDEVVETFSSYVRPKKFPKLTKRC 62
Query: 193 KDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKK 252
K I Q QVD G+ + + + ++ K N ++TW N D +V L+ C F
Sbjct: 63 KSFLKITQKQVDEGMRFEDFIRKLNELDPEK-----NSTIITWGNMDMKV-LKQNCMFNH 116
Query: 253 IWKP-PYFNRWINLKVPFHEVFGG-VRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLA 310
I P P+ +L + + FG L +A E G + G H LDDA +L
Sbjct: 117 I--PFPFKGEMRDLSLEYKNFFGDRTLTGLWKAAEEYGDSGTGTHHKALDDALTAYKLFK 174
Query: 311 LL 312
L+
Sbjct: 175 LV 176
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 137 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 196
FVV+DFE T +P EIIE +V + GQ+ + T ++P+ + +S ++T
Sbjct: 358 FVVLDFETT---GLDPQVDEIIEIGAVKIQD--GQIVDEYHTLIKPS--REISRRSSEIT 410
Query: 197 GIQQIQVDRGVTLSEALLRHDKWLENKGI--KNTNFAVVTWSNWDCRVM-LESECRFKKI 253
GI Q ++ ++ E L +LEN I N NF W +VM L+
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLD-------- 462
Query: 254 WKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLM 313
W+ PY + K + +L VE GL R H LDDA+ TA++ +
Sbjct: 463 WERPYIDTLALAK----SLLKMRSYSLDSVVEKLGLG-PFRHHRALDDARVTAQVFLRFV 517
Query: 314 HRGFKFSIT 322
K IT
Sbjct: 518 EMMKKIGIT 526
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 137 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLT 196
FVV+DFE T +P EIIE +V + GQ+ + T ++P+ + +S ++T
Sbjct: 358 FVVLDFETT---GLDPQVDEIIEIGAVKIQG--GQIVDEYHTLIKPS--REISRKSSEIT 410
Query: 197 GIQQIQVDRGVTLSEALLRHDKWLENKGI--KNTNFAVVTWSNWDCRVM-LESECRFKKI 253
GI Q ++ ++ E L +LE+ I N NF W +VM L+
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLD-------- 462
Query: 254 WKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLM 313
W+ PY I+ + +L VE GL R H LDDA+ TA++ +
Sbjct: 463 WERPY----IDTLALAKSLLKLRSYSLDSVVEKLGLG-PFRHHRALDDARVTAQVFLRFV 517
Query: 314 HRGFKFSIT 322
K IT
Sbjct: 518 EMMKKIGIT 526
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 206 GVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINL 265
G LSEA+ D +L + + +T +VT R L E K + P Y+NR+ +L
Sbjct: 119 GKPLSEAIEEFDAYLRSLSLHDTEIKLVTDGQLPLRQCLHREASAKDVELPAYYNRFSDL 178
Query: 266 KVPF 269
+ F
Sbjct: 179 RKEF 182
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 367 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
C CG +S+ VRK GP QG F+ C TR C FF+W
Sbjct: 1152 CNCGQLASQLTVRKDGPNQGRPFYAC----PTREKSCGFFKWG 1190
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 365 PSCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 408
PSC + MV+K GP +G +F+ C + RC FF+W
Sbjct: 169 PSCHHSQPAKLVMVKKEGPNKGRLFYTCDG---PKADRCKFFKW 209
>sp|P47729|DPO3_MYCPU DNA polymerase III PolC-type OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=polC PE=3 SV=2
Length = 1435
Score = 36.2 bits (82), Expect = 0.42, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 194
Q +VV D E T +P E+I+F + ++ + G++ +++P L F
Sbjct: 402 QEYVVYDIETT---GLSPMLNELIQFGASVIKN--GRIIETHHFFIKPKSK--LDSFTTK 454
Query: 195 LTGIQQIQVDRGVTLSEAL 213
LTGI Q +++G L EAL
Sbjct: 455 LTGITQEHLEKGYELQEAL 473
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 377 MVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
+VRK G +G F+ C ++ RGA+C FFEWA
Sbjct: 519 VVRKDGENKGRQFYAC---SLPRGAQCGFFEWA 548
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 366 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
+C CG ++ VRK GP +G FF C G C+FF WA
Sbjct: 812 TCNCGQEAVLLTVRKEGPNRGRQFFKCN------GGSCNFFLWA 849
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 366 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 408
SC C S V+K GP +G F C R +C FF+W
Sbjct: 896 SCLCSQPSVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 935
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 366 SCFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
+C CG ++ VRK GP QG F+ C N C+FF WA
Sbjct: 814 TCNCGREAVLLTVRKQGPNQGRHFYKCSN------GDCNFFLWA 851
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 367 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEW 408
C CG + V+K GP +G F C R +C FF+W
Sbjct: 899 CLCGQPAVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 937
>sp|C5JC96|VPS10_AJEDS Vacuolar protein sorting/targeting protein 10 OS=Ajellomyces
dermatitidis (strain SLH14081) GN=VPS10 PE=3 SV=1
Length = 1500
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 274 GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGS 333
G + ++ + EM G AW H R A ++ +G K W TND +
Sbjct: 67 AGTKWDIVDVGEMKGQAWSLMPH-------PMDRTKAYVLGKGGKH-------WVTNDQA 112
Query: 334 LTWNQFPERIFLPPHQL 350
+TW +F L P+QL
Sbjct: 113 MTWREFTVDAELSPYQL 129
>sp|C5GVC6|VPS10_AJEDR Vacuolar protein sorting/targeting protein 10 OS=Ajellomyces
dermatitidis (strain ER-3 / ATCC MYA-2586) GN=VPS10 PE=3
SV=1
Length = 1500
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 274 GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGS 333
G + ++ + EM G AW H R A ++ +G K W TND +
Sbjct: 67 AGTKWDIVDVGEMKGQAWSLMPH-------PMDRTKAYVLGKGGKH-------WVTNDQA 112
Query: 334 LTWNQFPERIFLPPHQL 350
+TW +F L P+QL
Sbjct: 113 MTWREFTVDAELSPYQL 129
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 367 CFCGVKSSKGMVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
C +++ +V+K GP +G F+ C + T +C+FF+WA
Sbjct: 718 CPEPMRAVTKVVQKEGPNKGKKFYTC-SLPYTSSEKCNFFKWA 759
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 377 MVRKPGPKQGSVFFGCGNWTVTRGARCHFFEWA 409
+VRK G +G F+ C + R A+C FFEWA
Sbjct: 519 VVRKSGENKGRHFYAC---PLAREAQCGFFEWA 548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,003,456
Number of Sequences: 539616
Number of extensions: 7104553
Number of successful extensions: 12605
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 12543
Number of HSP's gapped (non-prelim): 41
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)