Query 015078
Match_columns 413
No_of_seqs 327 out of 1209
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 2E-45 6.9E-50 363.9 22.1 253 117-386 8-285 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 7E-38 2.4E-42 289.4 21.8 192 134-325 9-204 (204)
3 2xri_A ERI1 exoribonuclease 3; 100.0 2E-37 6.8E-42 292.5 22.4 186 134-323 30-221 (224)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 6.5E-36 2.2E-40 294.2 24.6 205 135-340 78-290 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 2.1E-35 7.2E-40 296.9 22.1 207 135-342 128-342 (349)
6 2p1j_A POLIII, DNA polymerase 100.0 2.7E-33 9.2E-38 256.7 19.1 175 123-319 5-179 (186)
7 2gui_A DNA polymerase III epsi 100.0 5.7E-33 2E-37 255.1 19.3 169 135-317 9-186 (194)
8 3mxm_B Three prime repair exon 100.0 4.6E-32 1.6E-36 259.4 14.9 173 135-316 12-215 (242)
9 3u3y_B Three prime repair exon 100.0 3.4E-31 1.2E-35 262.5 13.9 173 135-316 12-215 (314)
10 2f96_A Ribonuclease T; RNAse, 100.0 1.4E-30 4.9E-35 244.9 17.2 177 135-317 29-214 (224)
11 1y97_A Three prime repair exon 100.0 8.4E-30 2.9E-34 241.1 17.7 174 135-318 10-212 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 2.8E-29 9.5E-34 237.5 17.5 178 135-318 37-223 (235)
13 2igi_A Oligoribonuclease; RNAs 99.9 7.2E-28 2.5E-32 218.6 11.3 165 134-316 4-177 (180)
14 1wlj_A Interferon stimulated g 99.9 9.1E-28 3.1E-32 220.7 8.8 157 135-317 5-170 (189)
15 2gbz_A Oligoribonuclease; ORN, 99.9 6.7E-27 2.3E-31 215.9 10.5 163 135-317 9-182 (194)
16 2qxf_A Exodeoxyribonuclease I; 99.9 1.6E-26 5.6E-31 241.0 14.4 170 135-316 9-201 (482)
17 3tr8_A Oligoribonuclease; tran 99.9 2E-26 6.8E-31 212.8 9.7 165 135-317 9-182 (186)
18 4hec_A Putative uncharacterize 98.8 3.1E-08 1.1E-12 91.5 12.1 154 136-315 23-181 (190)
19 2kfn_A Klenow fragment of DNA 98.7 2.6E-07 8.9E-12 98.7 15.7 147 135-318 26-195 (605)
20 4gmj_B CCR4-NOT transcription 98.6 6.2E-07 2.1E-11 87.6 16.1 173 135-317 34-246 (285)
21 1x9m_A DNA polymerase; DNA plo 98.3 1.7E-06 5.7E-11 94.0 10.8 141 137-319 1-186 (698)
22 2d5r_A CCR4-NOT transcription 98.3 2E-05 6.8E-10 75.7 16.5 173 135-317 24-236 (252)
23 1uoc_A POP2; hydrolase, DEDD n 98.3 1.5E-05 5.3E-10 77.8 15.5 173 135-316 38-265 (289)
24 2p51_A SPCC18.06C protein; DED 98.3 2.4E-05 8.1E-10 77.8 16.4 172 135-316 45-256 (333)
25 1qht_A Protein (DNA polymerase 98.1 8.7E-05 3E-09 81.5 17.7 151 135-313 135-327 (775)
26 3f2b_A DNA-directed DNA polyme 97.7 8.7E-06 3E-10 91.5 1.8 54 43-104 129-182 (1041)
27 3iay_A DNA polymerase delta ca 97.6 0.0018 6.3E-08 72.3 18.7 156 136-312 250-465 (919)
28 1noy_A Protein (DNA polymerase 97.4 0.0037 1.3E-07 63.0 16.3 165 135-312 106-335 (388)
29 1s5j_A DNA polymerase I; repli 97.3 0.0013 4.3E-08 73.0 12.9 155 136-309 191-386 (847)
30 2gv9_A DNA polymerase; polymer 97.3 0.0044 1.5E-07 71.0 16.8 169 136-312 321-550 (1193)
31 3d45_A Poly(A)-specific ribonu 97.1 0.0061 2.1E-07 63.8 14.1 85 228-316 276-392 (507)
32 2hnh_A DNA polymerase III alph 97.0 0.00016 5.4E-09 80.7 1.8 54 43-104 19-72 (910)
33 4dfk_A DNA polymerase I, therm 96.6 0.0042 1.4E-07 65.6 8.8 118 136-316 11-128 (540)
34 3o0f_A Putative metal-dependen 96.4 0.00096 3.3E-08 65.5 2.0 53 43-103 25-77 (301)
35 2hpi_A DNA polymerase III alph 96.2 0.001 3.5E-08 76.0 1.2 54 43-104 20-75 (1220)
36 2yb1_A Amidohydrolase; HET: AM 95.7 0.0038 1.3E-07 60.4 2.3 53 43-103 14-66 (292)
37 3qex_A DNA polymerase, GP43; d 95.6 0.17 5.8E-06 56.5 15.3 167 135-311 108-337 (903)
38 3k59_A POL II, DNA polymerase 95.2 0.5 1.7E-05 51.9 17.3 148 136-312 154-349 (786)
39 3e38_A Two-domain protein cont 95.0 0.0056 1.9E-07 61.0 0.9 61 43-103 31-95 (343)
40 3pv8_A DNA polymerase I; DNA p 91.2 0.49 1.7E-05 50.4 8.4 131 136-315 30-180 (592)
41 2py5_A DNA polymerase; protein 90.2 1 3.6E-05 47.6 9.8 132 135-315 6-183 (575)
42 3saf_A Exosome component 10; e 89.5 3.6 0.00012 41.9 12.8 133 135-316 129-277 (428)
43 1m65_A Hypothetical protein YC 89.0 0.13 4.5E-06 47.2 1.7 54 44-104 16-76 (245)
44 3b0x_A DNA polymerase beta fam 88.7 0.12 4.1E-06 54.7 1.3 61 44-104 350-416 (575)
45 2a1r_A Poly(A)-specific ribonu 87.6 1.8 6.1E-05 44.2 9.1 104 201-316 262-397 (430)
46 2yxo_A Histidinol phosphatase; 86.9 0.19 6.6E-06 46.6 1.3 61 44-104 14-83 (267)
47 1vk0_A Hypothetical protein; h 75.3 6.4 0.00022 36.0 7.1 89 213-314 97-205 (206)
48 2w9m_A Polymerase X; SAXS, DNA 73.6 1.1 3.9E-05 47.2 1.7 61 44-104 340-404 (578)
49 1yt3_A Ribonuclease D, RNAse D 72.6 20 0.00067 35.3 10.4 91 214-316 64-170 (375)
50 2e6m_A Werner syndrome ATP-dep 65.5 20 0.00069 31.8 8.0 93 214-318 86-197 (208)
51 2anu_A Hypothetical protein TM 61.0 1.2 4E-05 41.5 -1.2 27 43-69 32-58 (255)
52 3mwp_A Nucleoprotein; structur 58.2 6.8 0.00023 40.1 3.7 89 136-245 392-480 (577)
53 2hbj_A Exosome complex exonucl 52.8 62 0.0021 32.4 9.8 91 214-317 149-255 (410)
54 3cym_A Uncharacterized protein 51.0 56 0.0019 33.0 9.3 87 213-315 84-186 (440)
55 2a1r_A Poly(A)-specific ribonu 38.4 56 0.0019 33.0 6.9 49 135-183 22-95 (430)
56 2gai_A DNA topoisomerase I; zi 36.6 8.5 0.00029 41.2 0.5 23 384-411 589-611 (633)
57 2wje_A CPS4B, tyrosine-protein 35.8 8.2 0.00028 35.5 0.2 54 50-104 28-87 (247)
58 3dcp_A Histidinol-phosphatase; 35.7 8.4 0.00029 36.7 0.2 25 47-71 19-43 (283)
59 2fiy_A Protein FDHE homolog; F 33.7 13 0.00045 36.2 1.2 43 360-405 180-227 (309)
60 3q7c_A Nucleoprotein; deddh ex 32.6 55 0.0019 30.3 5.1 88 137-245 59-146 (243)
61 1v77_A PH1877P, hypothetical p 29.8 14 0.0005 33.4 0.8 25 44-70 13-37 (212)
62 3qy7_A Tyrosine-protein phosph 28.7 8.2 0.00028 36.4 -1.1 60 44-104 15-83 (262)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=2e-45 Score=363.85 Aligned_cols=253 Identities=25% Similarity=0.396 Sum_probs=214.1
Q ss_pred ccccCCCCCCCCCCCCCcccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEee--EEEEEEeCCCCCCCCcchhh
Q 015078 117 PYNMLTPAHPYDFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA--CFQTYVRPTCNQLLSDFCKD 194 (413)
Q Consensus 117 ~~~~~~~~~p~~~~~q~~~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~d--sF~~~VkP~~~p~Ls~~~~~ 194 (413)
+..|.+.++++ ++|||||+||||+........+|||||||++|.++|++.+ +|++||||...+.|++++++
T Consensus 8 ~~~m~~~~~~~-------~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ 80 (308)
T 3cg7_A 8 STRMAYQHCPF-------DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVD 80 (308)
T ss_dssp -----CCCCCC-------SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHH
T ss_pred hhhcccccCCC-------CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHH
Confidence 34566666665 4899999999998421112349999999999977899988 99999999963459999999
Q ss_pred hcCCChhhhcCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC
Q 015078 195 LTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG 274 (413)
Q Consensus 195 LTGIT~edV~~Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~ 274 (413)
+||||++||++||+|++|+.+|.+||++..+++||+++|+||+||++.||++++++.|+.+|..+.+|+|++.+++.+++
T Consensus 81 ltGIt~e~v~~ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~ 160 (308)
T 3cg7_A 81 FTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMD 160 (308)
T ss_dssp HHCCCHHHHHTSCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHH
T ss_pred HcCCCHHHHhcCCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999964799999999999998766789999999988775
Q ss_pred C-C------CCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhccccccccccc----cccCCCCCcccCCCCCC
Q 015078 275 G-V------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLM----WQTNDGSLTWNQFPERI 343 (413)
Q Consensus 275 ~-~------~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~~i~e~l~----~~~~~~~~~~~~~~~~~ 343 (413)
. . +++|++++++||++.++++|+|++||++||+|+.+|++++..+++++.+. ++..|.. ..++|+
T Consensus 161 ~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~~~~~~~~~----~~~~w~ 236 (308)
T 3cg7_A 161 RMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLV----YNKEWR 236 (308)
T ss_dssp HHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCCGGGSSCCC----CCTTGG
T ss_pred cccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcCCccccccc----cCcccc
Confidence 2 1 46899999999999987789999999999999999999999999998876 4444443 468999
Q ss_pred CCCCCcccchhcccCCccc------------cccceecCCCcCcceeccCCCCCC
Q 015078 344 FLPPHQLHKQMDLQNSIFQ------------YHPSCFCGVKSSKGMVRKPGPKQG 386 (413)
Q Consensus 344 ~~~~~~~~~~~~~~lP~~~------------~~~~c~cg~~~~~~~~~~~gp~qg 386 (413)
. ++++..|+.+|.+|+.. |..||||+...... ||-|+
T Consensus 237 ~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----~~~~~ 285 (308)
T 3cg7_A 237 S-SFMDAGKIFERVLPLVVTTIRAGDFRLEMYGVCRYCRKGMDVC-----GTSHQ 285 (308)
T ss_dssp G-CHHHHHHHHHHHSSCEEEECCGGGCCGGGTTBCTTTCCBTTTT-----TSSCS
T ss_pred c-chHHHHHHHHHhcccceeeeeccccchhhcccCCcCCCccccc-----ccccC
Confidence 9 99999999999999863 56799999998665 66665
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=7e-38 Score=289.40 Aligned_cols=192 Identities=36% Similarity=0.739 Sum_probs=168.3
Q ss_pred cccEEEEEEeeCCCCCCC-CCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHH
Q 015078 134 FQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEA 212 (413)
Q Consensus 134 ~~~fVV~D~ETTGl~~~~-~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eV 212 (413)
+.+|||||+||||+.... +..++|||||||++|.++|+++++|+++|||..++.|+++++++||||++||++||+|++|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 468999999999984211 3679999999999997689999999999999965569999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC--CCCCHHHHHHHcCC
Q 015078 213 LLRHDKWLENKGI-KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG--VRCNLKEAVEMAGL 289 (413)
Q Consensus 213 l~~f~~fL~~~~l-v~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~--~~~~L~~l~~~~gI 289 (413)
+.+|.+|+++..+ ....++|+||+.||++.||++++++.|++.|.++.+|+|++.+++.+++. .+++|++++++||+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi 168 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 168 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHcCC
Confidence 9999999998753 23456789999999623999999999999886556899999999988874 35799999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcccccccccc
Q 015078 290 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 325 (413)
Q Consensus 290 ~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~~i~e~l 325 (413)
+..+++|+|++||++||+|+.+|++++..+.|+|.+
T Consensus 169 ~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 169 DYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred CCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 998778999999999999999999999999999864
No 3
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=292.49 Aligned_cols=186 Identities=39% Similarity=0.708 Sum_probs=162.5
Q ss_pred cccEEEEEEeeCCCCCCCCCC--CcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHH
Q 015078 134 FQYFVVIDFEATCDKDKNPYP--QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 211 (413)
Q Consensus 134 ~~~fVV~D~ETTGl~~~~~~~--deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~e 211 (413)
+.+|||||+||||+ ++.. ++|||||||+++..++++.++|+++|||..++.|+++++++||||++||++||+|++
T Consensus 30 ~~~~vviD~ETTGl---~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 30 YHYFLVLDFEATCD---KPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp CSEEEEECCEECCC---C-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred CCeEEEEEEEcCCC---CCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 46899999999998 4444 599999999999656799999999999996557999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcc--EEEEEcCcchHHHH-HHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc
Q 015078 212 ALLRHDKWLENKGIKNTN--FAVVTWSNWDCRVM-LESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA 287 (413)
Q Consensus 212 Vl~~f~~fL~~~~lv~~n--~~vV~~g~fDir~f-L~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~-~~~~~L~~l~~~~ 287 (413)
|+++|.+|+++..+++|| +++++||.||+ .| |+++|++.|+++|..+.+|+|++..++...+ ...++|.+++++|
T Consensus 107 v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~ 185 (224)
T 2xri_A 107 VLERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGL 185 (224)
T ss_dssp HHHHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHHT
T ss_pred HHHHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHHc
Confidence 999999999999999996 48999999996 76 8899999999988655689997666554443 2347999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHhcccccccc
Q 015078 288 GLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITN 323 (413)
Q Consensus 288 gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~~i~e 323 (413)
|++.++++|+|++||++||+|+.+|++++..++++.
T Consensus 186 gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 186 SLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 999877889999999999999999999998887764
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=294.18 Aligned_cols=205 Identities=35% Similarity=0.662 Sum_probs=174.8
Q ss_pred ccEEEEEEeeCCCCCC-CCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHH
Q 015078 135 QYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 213 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~-~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl 213 (413)
..|||||+||||+... ++..++|||||||+++..+|+++++|+++|+|..++.|+++++++||||++||++||+|++|+
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~evl 157 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL 157 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHHH
Confidence 5899999999998532 256899999999999976789999999999999655699999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-CccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCC
Q 015078 214 LRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGL 289 (413)
Q Consensus 214 ~~f~~fL~~~~lv-~~n~~vV~~g~fDir~-fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~--~~L~~l~~~~gI 289 (413)
.+|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+++|.+..+|+|++.+++.+++..+ ++|++++++||+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHH-HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCC
Confidence 9999999986332 12578999999995 7 99999999999988655689999999988876544 899999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcccccccccccc---ccCCCCCcccCCC
Q 015078 290 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW---QTNDGSLTWNQFP 340 (413)
Q Consensus 290 ~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~~i~e~l~~---~~~~~~~~~~~~~ 340 (413)
+.++++|+|++||++||+||++|++++..+++++.+.. ...+.+.+|+..|
T Consensus 237 ~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 290 (299)
T 1zbh_A 237 DYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTP 290 (299)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCSSSCCCCCC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCccccccccccccCCC
Confidence 99877899999999999999999999988888887772 1235555553333
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=296.91 Aligned_cols=207 Identities=35% Similarity=0.661 Sum_probs=176.6
Q ss_pred ccEEEEEEeeCCCCCC-CCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHH
Q 015078 135 QYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 213 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~-~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl 213 (413)
..|||||+||||+... ++..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++||+|.+|+
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eVl 207 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL 207 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHHH
Confidence 6999999999998432 356799999999999966789999999999999655699999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-CccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCC
Q 015078 214 LRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGL 289 (413)
Q Consensus 214 ~~f~~fL~~~~lv-~~n~~vV~~g~fDir~-fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~--~~L~~l~~~~gI 289 (413)
.+|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+.+|.+..+|+|++.+++.+++..+ ++|++++++|||
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 286 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 286 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTC
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhH-HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCC
Confidence 9999999985332 12578999999995 7 99999999999888655689999999998876544 899999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcccccccccccc---ccCCCCCcccCCCCC
Q 015078 290 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW---QTNDGSLTWNQFPER 342 (413)
Q Consensus 290 ~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~~i~e~l~~---~~~~~~~~~~~~~~~ 342 (413)
+.++++|+|++||++||+||.+|++++..+.+++.+.. ...+.+.+|+..|..
T Consensus 287 ~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~~~~~~~~~~~~~~~~~ 342 (349)
T 1zbu_A 287 DYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPP 342 (349)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCTTSCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhccccccCcccccCCCCCC
Confidence 99877899999999999999999999988888887772 224566666444443
No 6
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.7e-33 Score=256.70 Aligned_cols=175 Identities=26% Similarity=0.289 Sum_probs=147.9
Q ss_pred CCCCCCCCCCCcccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhh
Q 015078 123 PAHPYDFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQ 202 (413)
Q Consensus 123 ~~~p~~~~~q~~~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~ed 202 (413)
.++|+. ..+||+||+||||+ ++..++|||||+|.++ +|+++++|+++|+|.. .|+++++++||||+++
T Consensus 5 ~~~~l~-----~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~ 72 (186)
T 2p1j_A 5 DDSTFG-----DATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEM 72 (186)
T ss_dssp -------------CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHH
T ss_pred cCCcCc-----CCCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHH
Confidence 455665 26899999999998 6678999999999996 7899999999999996 5999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHH
Q 015078 203 VDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKE 282 (413)
Q Consensus 203 V~~Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~ 282 (413)
|+++|++.+|+++|.+|+++. ++|+|++.||+ .||++++++.|++.|. .+++|+..+++.+++.++++|++
T Consensus 73 l~~~~~~~~v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~ 143 (186)
T 2p1j_A 73 LENKRSIEEVLPEFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDS 143 (186)
T ss_dssp HTTCCBHHHHHHHHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHH
T ss_pred HhcCCCHHHHHHHHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHH
Confidence 999999999999999999874 45666679995 8999999999987653 47999999998888666789999
Q ss_pred HHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 015078 283 AVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKF 319 (413)
Q Consensus 283 l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~~~ 319 (413)
++++||++.. .+|+|++||++|++|+.+|++++.+-
T Consensus 144 l~~~~gi~~~-~~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 144 VVEKLGLGPF-RHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp HHHHTTCCST-TCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHcCCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999986 57999999999999999999876654
No 7
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=5.7e-33 Score=255.11 Aligned_cols=169 Identities=20% Similarity=0.165 Sum_probs=146.9
Q ss_pred ccEEEEEEeeCCCCCCCC-----CCCcEEEEcEEEEEcCCCeEe-eEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCC
Q 015078 135 QYFVVIDFEATCDKDKNP-----YPQEIIEFPSVIVSSVTGQLE-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVT 208 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~-----~~deIIEIGAV~vd~~~g~i~-dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~ 208 (413)
.+|||||+||||+ ++ ..++|||||+|+++ +|++. ++|+++|+|.. .|+++++++||||++||+++|+
T Consensus 9 ~~~vviD~ETTGl---~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~ 81 (194)
T 2gui_A 9 TRQIVLDTETTGM---NQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPT 81 (194)
T ss_dssp CEEEEEEEEESCC---CSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCC
T ss_pred CCEEEEEeeCCCC---CCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCC
Confidence 3799999999998 44 46999999999997 67775 57999999996 6999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC--CceeehHHHHHHhcCCCCCCHHHHHHH
Q 015078 209 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF--NRWINLKVPFHEVFGGVRCNLKEAVEM 286 (413)
Q Consensus 209 f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~--~~~iDl~~l~r~l~~~~~~~L~~l~~~ 286 (413)
|++|+++|.+|+++. .+|+||+.||+ .||+.++++.|++.|.+. .+++|+..+++.+++..+++|++++++
T Consensus 82 ~~~v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~ 154 (194)
T 2gui_A 82 FAEVADEFMDYIRGA------ELVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCAR 154 (194)
T ss_dssp HHHHHHHHHHHHTTS------EEEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCC------eEEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHH
Confidence 999999999999875 34566779995 899999999999877543 589999999999888667899999999
Q ss_pred cCCCCCC-CCCchHHHHHHHHHHHHHHHHhcc
Q 015078 287 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 287 ~gI~~~g-~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
||++..+ .+|+|++||++|++|+.+|+++..
T Consensus 155 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 155 YEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp TTCCCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred cCcCCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 9999876 389999999999999999986543
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.97 E-value=4.6e-32 Score=259.36 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=143.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCC--------C---------eEeeEEEEEEeCCCCCCCCcchhhhcC
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLTG 197 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~--------g---------~i~dsF~~~VkP~~~p~Ls~~~~~LTG 197 (413)
.+|||||+||||+ ++..++|||||||+++... | +++++|+++|+|.. .|+++++++||
T Consensus 12 ~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~G 86 (242)
T 3mxm_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (242)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHHC
T ss_pred ceEEEEEeecCCC---CCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhcC
Confidence 5899999999998 6778999999999997320 0 67899999999996 69999999999
Q ss_pred CChhhhcCC--CCHH-HHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc
Q 015078 198 IQQIQVDRG--VTLS-EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF 273 (413)
Q Consensus 198 IT~edV~~A--p~f~-eVl~~f~~fL~~~~lv~~n~~vV~~g-~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~ 273 (413)
||++||+++ |+|+ +|+++|.+|+++.. ...++|+||+ .||+ .||++++++.|+.++.....++|+..+++.++
T Consensus 87 It~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~ 163 (242)
T 3mxm_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (242)
T ss_dssp CCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHHHH
Confidence 999999998 9996 99999999999721 1124566776 9995 89999999999886522337899988877654
Q ss_pred ----C-----CCCCCHHHHHHH-cCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 274 ----G-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 274 ----~-----~~~~~L~~l~~~-~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
+ .++++|++++++ ||++.. .+|||++||++|++||+++.++.
T Consensus 164 ~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred hhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 2 357899999976 999986 68999999999999999877653
No 9
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=3.4e-31 Score=262.55 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=143.0
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCC--------C---------eEeeEEEEEEeCCCCCCCCcchhhhcC
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLTG 197 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~--------g---------~i~dsF~~~VkP~~~p~Ls~~~~~LTG 197 (413)
.+|||||+||||+ ++..++|||||+|+++... | +++++|+++|+|.+ .|+++++++||
T Consensus 12 ~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 5899999999998 6678999999999997321 0 46799999999996 69999999999
Q ss_pred CChhhhcCC--CCH-HHHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHh-
Q 015078 198 IQQIQVDRG--VTL-SEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEV- 272 (413)
Q Consensus 198 IT~edV~~A--p~f-~eVl~~f~~fL~~~~lv~~n~~vV~~-g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l- 272 (413)
||++||+++ |+| +||+++|.+|+++.. ...+.|+|| ..||+ .||++++++.|+.+|.....++|+..+++.+
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~ 163 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHHHH
Confidence 999999999 999 799999999999821 113456667 59995 8999999999998764345689998766533
Q ss_pred ---cC-----CCCCCHHHHHHH-cCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 273 ---FG-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 273 ---~~-----~~~~~L~~l~~~-~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
++ .++++|++++++ ||++.. ++|||++||++|++||+++.++.
T Consensus 164 r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp TTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 33 257899999999 999986 78999999999999999876653
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=1.4e-30 Score=244.93 Aligned_cols=177 Identities=19% Similarity=0.173 Sum_probs=145.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcC-CCe--EeeEEEEEEeCCCCCCCCcchhhhcCCChh-hhcCCCCHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV-TGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 210 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~-~g~--i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~e-dV~~Ap~f~ 210 (413)
..|||||+||||+ ++..++|||||+|+++.. +|+ +.++|+++|+|.....|+++++++||||++ +|++|+++.
T Consensus 29 ~~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~ 105 (224)
T 2f96_A 29 YLPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE 105 (224)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred CcEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 5899999999998 667799999999999742 576 478999999995223699999999999997 599999999
Q ss_pred HHHHHHHHHHhhcCC---CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 015078 211 EALLRHDKWLENKGI---KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 286 (413)
Q Consensus 211 eVl~~f~~fL~~~~l---v~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~-~~~~iDl~~l~r~l~~~~~~~L~~l~~~ 286 (413)
+|+.+|.+|+..... .+..++|+|++.||+ .||++++++.|+..+++ ...++|+..+++.+++ .++|.+++++
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHH
Confidence 999999999973100 012345556679995 89999999999875333 3579999999998886 3689999999
Q ss_pred cCCCCCC-CCCchHHHHHHHHHHHHHHHHhcc
Q 015078 287 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 287 ~gI~~~g-~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
||++..+ .+|+|++||++|++|+.+|+++..
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999753 689999999999999999998644
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=8.4e-30 Score=241.06 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=142.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcC--------------CCeEeeEEEEEEeCCCCCCCCcchhhhcCCCh
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV--------------TGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQ 200 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~--------------~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~ 200 (413)
.+||+||+||||+ ++..++|||||+|+++.. .+++.++|+++|+|.. .|+++++++||||+
T Consensus 10 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GIt~ 84 (238)
T 1y97_A 10 ETFVFLDLEATGL---PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSS 84 (238)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCH
T ss_pred CeEEEEEeeCCCc---CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCCCH
Confidence 5899999999998 567799999999999842 1378899999999996 69999999999999
Q ss_pred hhh--cCCCCH-HHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc---
Q 015078 201 IQV--DRGVTL-SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF--- 273 (413)
Q Consensus 201 edV--~~Ap~f-~eVl~~f~~fL~~~~lv~~n~~vV~~g-~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~--- 273 (413)
+|| .++|+| ++|+++|.+|+++.. +..+.|+|++ .||+ .||++++.+.|+.+|. ...++|+..+++.++
T Consensus 85 ~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~~~ 160 (238)
T 1y97_A 85 EGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLPR-DTVCLDTLPALRGLDRAH 160 (238)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHHHC
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHhcc
Confidence 999 588999 599999999998631 1245566678 9995 8999999999988762 346899999988886
Q ss_pred ------C-CCCCCHHHHHH-HcCCCCCCCCCchHHHHHHHHHHHHHHHHhccc
Q 015078 274 ------G-GVRCNLKEAVE-MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 318 (413)
Q Consensus 274 ------~-~~~~~L~~l~~-~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~~ 318 (413)
+ .++++|+++++ +||++.. .+|+|++||++|++|+.+++++...
T Consensus 161 ~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 161 SHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp ----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred CccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3 36789999999 5999985 6899999999999999999876543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.96 E-value=2.8e-29 Score=237.54 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=147.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEc-CCCe--EeeEEEEEEeCCCCCCCCcchhhhcCCChh-hhcCCCCHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 210 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~-~~g~--i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~e-dV~~Ap~f~ 210 (413)
.+||+||+||||+ ++..++|||||+|+++. .+|+ +.++|+++|+|.....|+++++++||||++ +|+++|++.
T Consensus 37 ~~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~ 113 (235)
T 3v9w_A 37 FYPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY 113 (235)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred CcEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 5899999999998 67789999999999962 2566 479999999995334699999999999999 999999999
Q ss_pred HHHHHHHHHHhhcCC---CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 015078 211 EALLRHDKWLENKGI---KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 286 (413)
Q Consensus 211 eVl~~f~~fL~~~~l---v~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~-~~~~iDl~~l~r~l~~~~~~~L~~l~~~ 286 (413)
+|+++|.+|+++..- .+....|.|++.||+ .||+.++++.|+..+++ ...++|++.+++.+++ .++|++++++
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHHHH
Confidence 999999999974110 011345556679995 89999999999876323 2468999999998887 4699999999
Q ss_pred cCCCCCC-CCCchHHHHHHHHHHHHHHHHhccc
Q 015078 287 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFK 318 (413)
Q Consensus 287 ~gI~~~g-~~HrALdDA~aTA~Ll~~ll~~g~~ 318 (413)
||++..+ .+|+|++||++|++|+.+|+++..+
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 9999864 6899999999999999999987654
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.95 E-value=7.2e-28 Score=218.60 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=124.7
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEee-EEEEEEeCCCC--CCCCcchh---hhcCCChhhhcCCC
Q 015078 134 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA-CFQTYVRPTCN--QLLSDFCK---DLTGIQQIQVDRGV 207 (413)
Q Consensus 134 ~~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~d-sF~~~VkP~~~--p~Ls~~~~---~LTGIT~edV~~Ap 207 (413)
..+||+||+||||+ ++..++|||||+|++|. ++++++ +|+++|+|... +.++++++ ++||||++||+++|
T Consensus 4 ~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~-~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~ 79 (180)
T 2igi_A 4 ENNLIWIDLEMTGL---DPERDRIIEIATLVTDA-NLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM 79 (180)
T ss_dssp GGCEEEEEEEESSS---CTTTCCEEEEEEEEECT-TCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC
T ss_pred CCcEEEEEeeCCCC---CCCCCceEEEEEEEEcC-CCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC
Confidence 46899999999998 67789999999999973 555554 59999999851 12455664 45999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hH-HHHHHhcCCCCCCHHHHH
Q 015078 208 TLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LK-VPFHEVFGGVRCNLKEAV 284 (413)
Q Consensus 208 ~f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iD--l~-~l~r~l~~~~~~~L~~l~ 284 (413)
++++|+++|.+|+++..-.+...++.|+..||+ .||+.++.+.+.. +..+++| +. .+.+++++. +
T Consensus 80 ~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~-~fL~~~~~~~~~~---~~~~~~d~~tl~~l~~~~~p~----~---- 147 (180)
T 2igi_A 80 GDREAELATLEFLKQWVPAGKSPICGNSIGQDR-RFLFKYMPELEAY---FHYRYLDVSTLKELARRWKPE----I---- 147 (180)
T ss_dssp CHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEETHHHHHHHHHHCGG----G----
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCHHHHH-HHHHHHHHHhccC---CCcceeeHHHHHHHHHHhChH----h----
Confidence 999999999999986311111233444459995 8999999877633 2357899 55 466666652 1
Q ss_pred HHcCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 285 EMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 285 ~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
..|++.. .+|||++||++|++||.++++..
T Consensus 148 -~~~i~~~-~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 148 -LDGFTKQ-GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp -GGGSCCC-CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -hhCCCCc-CCcCcHHHHHHHHHHHHHHHHHh
Confidence 1377654 68999999999999999998764
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=9.1e-28 Score=220.66 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=124.8
Q ss_pred ccEEEEEEeeCCCCCCCCCC-CcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHH
Q 015078 135 QYFVVIDFEATCDKDKNPYP-QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 213 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~-deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl 213 (413)
.+|||||+||||+ ++.. ++|||||+|.. +|+++ |++||||.. +|+++++++||||++||++||+|++|+
T Consensus 5 ~~~vviD~ETTGl---~~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGL---GPHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEE---TTTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCc---CCCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 5899999999998 4544 57899998753 56765 999999996 599999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHH--HH--hcC-CCCCCHHHHHHH-c
Q 015078 214 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPF--HE--VFG-GVRCNLKEAVEM-A 287 (413)
Q Consensus 214 ~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~--r~--l~~-~~~~~L~~l~~~-~ 287 (413)
++|.+|+++. ++|.|++.||+ .||+.+ +|. ..++|+..++ ++ .++ .++++|++++++ |
T Consensus 75 ~~~~~~l~~~------~lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGK------LVVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTS------EEEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCC------EEEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 9999999874 34555568995 788643 342 3689987653 23 333 357899999998 8
Q ss_pred CCCCCCC--CCchHHHHHHHHHHHHHHHHhcc
Q 015078 288 GLAWQGR--AHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 288 gI~~~g~--~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
|++..+. +|+|++||++|++|+.++++...
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9998743 89999999999999999987643
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.7e-27 Score=215.87 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=123.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCC-eEeeEEEEEEeCCCCCCC----Ccchhhh---cCCChhhhcCC
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG-QLEACFQTYVRPTCNQLL----SDFCKDL---TGIQQIQVDRG 206 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g-~i~dsF~~~VkP~~~p~L----s~~~~~L---TGIT~edV~~A 206 (413)
.+||+||+||||+ ++..++|||||||+.|. ++ .+.++|+++|+|.. .+ ++++.++ ||||++||+++
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~--~i~~~~~~~~~~~~~itGIt~~~l~~~ 82 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL--ETLEAMDEWNRNQHRRSGLWQRVLDSQ 82 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH--HHHHTSCSHHHHHHHHHTHHHHHHHCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH--HHhhccchHHHHHHHhhCCCHHHHhcC
Confidence 5899999999998 67789999999999873 33 45578999999985 34 5556555 99999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHH---HHHHhcCCCCCCHHHH
Q 015078 207 VTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKV---PFHEVFGGVRCNLKEA 283 (413)
Q Consensus 207 p~f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~---l~r~l~~~~~~~L~~l 283 (413)
|++++|+++|.+|+++..-.+.-..+.|+..|| +.||++++.+.+.. +.++.+|+.. +.+++++. +
T Consensus 83 p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD-~~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~ 151 (194)
T 2gbz_A 83 VTHAQAEAQTVAFLGEWIRAGASPMCGNSICQD-RRFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------V 151 (194)
T ss_dssp CCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHH-HHHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------G
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCHHHh-HHHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------H
Confidence 999999999999999865111122344556999 58999999887632 2356789764 34444331 1
Q ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Q 015078 284 VEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 284 ~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
++ +++.. .+|||++||++|++||..+.+...
T Consensus 152 ~~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 152 AS--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp GT--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred Hh--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 22 36654 689999999999999999987653
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.94 E-value=1.6e-26 Score=241.02 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=136.1
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeE-EEEEEeCCCCCCC--CcchhhhcCCChhhhcCCCCH-H
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCNQLL--SDFCKDLTGIQQIQVDRGVTL-S 210 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~ds-F~~~VkP~~~p~L--s~~~~~LTGIT~edV~~Ap~f-~ 210 (413)
.+|||||+||||+ ++..++|||||+|+++ .+|+++++ |+++|+|.. .+ ++.++.+||||++||.+++.+ .
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARAKGENEA 82 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHHHCBCHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhcCCCCHH
Confidence 5899999999998 6778999999999997 46777776 999999996 35 688899999999999976655 9
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCC-C---CceeehHHHHHHhc------------
Q 015078 211 EALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPY-F---NRWINLKVPFHEVF------------ 273 (413)
Q Consensus 211 eVl~~f~~fL~~~~lv~~n~~vV~~-g~fDir~fL~~~~~~~gi~~P~~-~---~~~iDl~~l~r~l~------------ 273 (413)
+|+.+|.+|++.. ..++|.|+ ..||+ .||+.++.+.|+..... + +.++|+..+++.++
T Consensus 83 evl~~f~~~l~~~----~~~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~ 157 (482)
T 2qxf_A 83 AFAARIHSLFTVP----KTCILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 (482)
T ss_dssp HHHHHHHHHHTST----TEEEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBC
T ss_pred HHHHHHHHHHcCC----CCEEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCccc
Confidence 9999999999821 12344445 49995 89999999998753210 1 56789988887765
Q ss_pred --CCCCCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 274 --GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 274 --~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
+..+++|+++++++||+.. .+|+|++||++|++|+.+|.+..
T Consensus 158 ~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 158 DDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 2346799999999999985 68999999999999999987653
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.93 E-value=2e-26 Score=212.83 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=122.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeE-EEEEEe-CCCC-CCCCcc---hhhhcCCChhhhcCCCC
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVR-PTCN-QLLSDF---CKDLTGIQQIQVDRGVT 208 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~ds-F~~~Vk-P~~~-p~Ls~~---~~~LTGIT~edV~~Ap~ 208 (413)
.+||+||+||||+ ++..|+|||||||+.| .++++++. ++.+|+ |... ..+++. +..+||||+++|+++|+
T Consensus 9 ~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 9 DNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp TCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 6899999999998 7889999999999775 34466555 466796 5410 013444 55578999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hHH-HHHHhcCCCCCCHHHHHH
Q 015078 209 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LKV-PFHEVFGGVRCNLKEAVE 285 (413)
Q Consensus 209 f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iD--l~~-l~r~l~~~~~~~L~~l~~ 285 (413)
+++|+++|++|+++..-.+....+.|+..|| +.||++++.+.|..+ .++.+| +.. +.|+++|. +.
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD-~~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~----~~---- 152 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQD-RRFLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQ----IA---- 152 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHH-HHHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHH----HH----
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHh-HHHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcc----cc----
Confidence 9999999999994221111122344455999 599999998877543 467899 665 88888872 22
Q ss_pred HcCCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Q 015078 286 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 286 ~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
-|++.. .+|||++||++|.++|....+...
T Consensus 153 -~~~~~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 153 -AAHIKE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp -TTSCCC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred -ccCCCC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 177765 689999999999999998877543
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.81 E-value=3.1e-08 Score=91.49 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=96.4
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhh--hcCCChhhhcCCCCHHHHH
Q 015078 136 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD--LTGIQQIQVDRGVTLSEAL 213 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~--LTGIT~edV~~Ap~f~eVl 213 (413)
.-+++|+|+|+. ....++||||+|. ++|+ .|+..+..-.....+++..+ +.++.+.......+++++.
T Consensus 23 ~r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~ 92 (190)
T 4hec_A 23 VRYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIR 92 (190)
T ss_dssp EEEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHH
T ss_pred eEEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHH
Confidence 468999999973 4568999999985 4664 58777653211246777665 6777766666678999999
Q ss_pred HHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHc-CCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCC
Q 015078 214 LRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFK-KIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAW 291 (413)
Q Consensus 214 ~~f~~fL~~~~lv~~n~~vV~~-g~fDir~fL~~~~~~~-gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~gI~~ 291 (413)
.+|.+||.... .....|+.| +.|| ..+|...+... .++.+ +.....|++.++... + ...++.
T Consensus 93 ~~L~~FL~~~~--~~~~eLwa~~~~yD-~~~L~ql~g~m~~lP~~-~p~~~~dlr~~~~~~-g-----------~~~lp~ 156 (190)
T 4hec_A 93 LDLEEFLRIDG--TDSIELWAWVGAYD-HVALCQLWGPMTALPPT-VPRFTRELRQLWEDR-G-----------CPRMPP 156 (190)
T ss_dssp HHHHHHTTTTS--SCEEEEEESSCHHH-HHHHHTTTSSGGGSCTT-SCSSCEEHHHHHHHT-T-----------CCCCCC
T ss_pred HHHHHHHHhcC--CCCCEEEEeccccc-HHHHHHHhcccccCCcc-cchhhHHHHHHHHHc-C-----------CCCCCC
Confidence 99999997542 223445565 6899 47776543221 12211 112235666554321 1 122222
Q ss_pred -CCCCCchHHHHHHHHHHHHHHHHh
Q 015078 292 -QGRAHCGLDDAKNTARLLALLMHR 315 (413)
Q Consensus 292 -~g~~HrALdDA~aTA~Ll~~ll~~ 315 (413)
.+..|+||.||+..+..++.+...
T Consensus 157 ~~~~~H~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 157 RPRDVHDALVDARDQLRRFRLITST 181 (190)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcCcHHHHHHHHHHHHHHhCc
Confidence 335699999999999999988643
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.67 E-value=2.6e-07 Score=98.70 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=104.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 214 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~ 214 (413)
..+|+||+||||+ ++..++|++|+++. .+|+. .||.+. +.. + | +.+++++++++.
T Consensus 26 ~~~va~DtEttgl---~~~~~~iv~I~~~~---~~g~~-----~yip~~-~~~-------~-~-----~~~~l~~~~vl~ 80 (605)
T 2kfn_A 26 APVFAFDTETDSL---DNISANLVGLSFAI---EPGVA-----AYIPVA-HDY-------L-D-----APDQISRERALE 80 (605)
T ss_dssp SSSEEEEEEESCS---CTTTCCEEEEEEEE---ETTEE-----EEEECC-CCS-------T-T-----CCCCCCHHHHHH
T ss_pred CCeEEEEEecCCC---CcccCceEEEEEEE---cCCcE-----EEEecc-ccc-------c-c-----cccccCHHHHHH
Confidence 3679999999997 56778999999884 24542 356332 110 1 2 235677999999
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 015078 215 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 292 (413)
Q Consensus 215 ~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~~ 292 (413)
.|.+|+++..+ ..|+|+..||+ .+|.+ +|+.++ ..++|+......+.+ ..+++|++++++| |++..
T Consensus 81 ~L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i 148 (605)
T 2kfn_A 81 LLKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 148 (605)
T ss_dssp HHHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcc
Confidence 99999998522 24666779996 77763 687654 358999877766666 3478999999988 76531
Q ss_pred --------CC-------------CCchHHHHHHHHHHHHHHHHhccc
Q 015078 293 --------GR-------------AHCGLDDAKNTARLLALLMHRGFK 318 (413)
Q Consensus 293 --------g~-------------~HrALdDA~aTA~Ll~~ll~~g~~ 318 (413)
|. .|.|..||.+|++|+..|.++..+
T Consensus 149 ~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 149 TFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 156899999999999988766544
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.64 E-value=6.2e-07 Score=87.61 Aligned_cols=173 Identities=17% Similarity=0.143 Sum_probs=119.8
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCe-----EeeEEEEEEeCCCCCCCCcc
Q 015078 135 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQ-----LEACFQTYVRPTCNQLLSDF 191 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~------------------~~deIIEIGAV~vd~~~g~-----i~dsF~~~VkP~~~p~Ls~~ 191 (413)
.+||++|+|.||+..... ..-.|||||...++ .+|+ ..-.|+....|.. ...++.
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~-~~g~~p~~~~~wqFNF~f~~~~-d~~~~~ 111 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 111 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeec-cCCCcCCCeeEEEEEEEecccc-ccccHH
Confidence 489999999999842110 12259999999998 4443 3556777777875 346777
Q ss_pred hhhh---cCCChhhh-cCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 015078 192 CKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 257 (413)
Q Consensus 192 ~~~L---TGIT~edV-~~Ap~f~eVl~~f~~fL~~~~lv-~~n~~vV~-~g~fDir~fL~~~~~~~gi~~P~-------- 257 (413)
++++ +||.-+.. ..+.+.. +|.+.+...+++ ..++.+|+ ++.+|+ .||-+.+-... +|.
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~----~f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~~--LP~~~~eF~~~ 184 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQ----YFAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNSN--LPEEELDFFEI 184 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTSC--CCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHcCCCHH----HHHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCCC--CCCCHHHHHHH
Confidence 7776 78877665 3566664 455566555443 34445555 678997 78877765433 332
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Q 015078 258 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 258 ---~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
+|..++|++-+.+...+. ..+|+++++.+|++..|..|.|-.|++.|+.+|.+|.+.-.
T Consensus 185 l~~~FP~vYD~K~l~~~~~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 185 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp HHHHCSCEEEHHHHGGGSTTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCchhhhHHHHHHhcccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 122467887766544332 34799999999999888999999999999999999987543
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.32 E-value=1.7e-06 Score=94.02 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=92.1
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHHH
Q 015078 137 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 216 (413)
Q Consensus 137 fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~f 216 (413)
+||||+||||+ ++..++|..|.+ .+..++++ | .+.|. .++++++.|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi--~~~~~~~~---~--~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVI--YDYSTAEY---V--SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEE--EETTTTEE---E--EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEE--EecCCCcE---E--EEChH------------------------HHHHHHHHH
Confidence 58999999998 566788876633 34333332 1 22222 224466777
Q ss_pred HHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHH---cCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc----
Q 015078 217 DKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF---KKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA---- 287 (413)
Q Consensus 217 ~~fL~~~~lv~~n~~vV~~g-~fDir~fL~~~~~~---~gi~~P~~~~~~iDl~~l~r~l~~-~~~~~L~~l~~~~---- 287 (413)
.+|++ .. ...|.|++ .||+ .+|...+++ .|+.+++ ..++||....+.+.+ ..+++|++++++|
T Consensus 47 ~~~l~-~~----~~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVA-RG----GLIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHH-TT----CCEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHh-cC----CeEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 77786 21 23577888 9995 788877643 3776531 468999887776665 3467777777666
Q ss_pred ----CC-------CC----------CC---C------------CCchHHHHHHHHHHHHHHHHhcccc
Q 015078 288 ----GL-------AW----------QG---R------------AHCGLDDAKNTARLLALLMHRGFKF 319 (413)
Q Consensus 288 ----gI-------~~----------~g---~------------~HrALdDA~aTA~Ll~~ll~~g~~~ 319 (413)
|. ++ .| . .|.|..||.+|.+|+..|..+..+.
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31 10 01 0 4679999999999999998865443
No 22
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.29 E-value=2e-05 Score=75.68 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=119.3
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE-----eeEEEEEEeCCCCCCCCcc
Q 015078 135 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 191 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~------------------~~deIIEIGAV~vd~~~g~i-----~dsF~~~VkP~~~p~Ls~~ 191 (413)
.+||++|+|.+|+..... ..-.|||||...+| .+|+. .-.|+....... ...++.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999953210 23579999999998 45553 456666644443 235666
Q ss_pred hhhh---cCCChhhh-cCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCCC-------
Q 015078 192 CKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPPY------- 258 (413)
Q Consensus 192 ~~~L---TGIT~edV-~~Ap~f~eVl~~f~~fL~~~~lv-~~n~~vV~-~g~fDir~fL~~~~~~~gi~~P~~------- 258 (413)
+.++ +||.-+.. .++.+.. +|.+.+-.++++ ..++.+++ +|.+|+ .+|-+.+.. -++|.-
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~~--~~LP~~~~~F~~~ 174 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQ----YFAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTN--SNLPEEELDFFEI 174 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHHT--SCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHhcCCCHH----HHHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhcC--CCCCCCHHHHHHH
Confidence 6654 67777665 3677766 466666666554 34566666 578996 777766553 344421
Q ss_pred ----CCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Q 015078 259 ----FNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 259 ----~~~~iDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
|...+|++-+.+...+. ..+|+.+++.+|++..|..|.|-.|++.|+.+|.+|.+...
T Consensus 175 l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 175 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp HHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 22467777666544332 35799999999999888999999999999999999987653
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.28 E-value=1.5e-05 Score=77.84 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=117.8
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE------eeEEEEEEeCCCCCCCCc
Q 015078 135 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL------EACFQTYVRPTCNQLLSD 190 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~------------------~~deIIEIGAV~vd~~~g~i------~dsF~~~VkP~~~p~Ls~ 190 (413)
.+||++|+|.+|+..... ..-.|||||...+| .+|+. .-.|+....... ...++
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccH
Confidence 489999999999842110 23579999999998 44442 456666644442 23455
Q ss_pred chhhh---cCCChhhh-cCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC-------
Q 015078 191 FCKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP------- 257 (413)
Q Consensus 191 ~~~~L---TGIT~edV-~~Ap~f~eVl~~f~~fL~~~~lv-~~n~~vV~-~g~fDir~fL~~~~~~~gi~~P~------- 257 (413)
.++++ +||.-+.. .++.+.. +|.+.+-.++++ ..++.+++ +|.+|+ .||-+.+.. -++|.
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt~--~~LP~~~~~F~~ 188 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILMN--DSMPNNKEDFEW 188 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHTT--SCCCSSHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhcc--ccCCcCHHHHHH
Confidence 55554 67776665 3577665 566667666665 34566666 578997 777766543 34442
Q ss_pred ----CCCceeehHHHHHHhcCCC--------------CCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 258 ----YFNRWINLKVPFHEVFGGV--------------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 258 ----~~~~~iDl~~l~r~l~~~~--------------~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
+|..++|++-+.+...+.. ..+|+++++.+|++..|..|.|-.|++.|+.+|.+|.+..
T Consensus 189 ~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 189 WVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1235789987776554322 2479999999999988889999999999999999998764
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.25 E-value=2.4e-05 Score=77.76 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=119.3
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE-----eeEEEEEEeCCCCCCCCcc
Q 015078 135 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 191 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~------------------~~deIIEIGAV~vd~~~g~i-----~dsF~~~VkP~~~p~Ls~~ 191 (413)
..||++|.|.+|+..... +.-.|||||...+| .+|+. .-.|+....... ...++.
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999953211 11369999999998 45553 556777655443 235666
Q ss_pred hhhh---cCCChhhh-cCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 015078 192 CKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 257 (413)
Q Consensus 192 ~~~L---TGIT~edV-~~Ap~f~eVl~~f~~fL~~~~lv-~~n~~vV~-~g~fDir~fL~~~~~~~gi~~P~-------- 257 (413)
++++ +||.-+.. .++.+.. +|.+.|-.++++ ..++.+++ ++.+|+ .||-+.+. +-++|.
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~----~F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt--~~~LP~~~~eF~~~ 195 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPA----DFAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMT--QIPLPAEYEEFYKI 195 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHH--CSCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhc--CCCCCCCHHHHHHH
Confidence 6665 58887766 4677776 466666556554 34456666 578997 77776654 334442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 258 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 258 ---~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
+|..++|++-+.+...+. ..+|..+++.+|++..|..|.|-.|++.|+.+|.+|.+..
T Consensus 196 l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 196 LCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 122467877766554332 3589999999999998999999999999999999998754
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.07 E-value=8.7e-05 Score=81.49 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=103.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 214 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~ 214 (413)
-.++.||+||||..+.++..++||.||.+.- .++++ +. .+| |..+.|...++..+.|.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~--~~~~~---~t--~~~---------------i~~~~v~~~~~E~~LL~ 192 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADG--SEARV---IT--WKK---------------IDLPYVDVVSTEKEMIK 192 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECS--SCEEE---EE--SSC---------------CCCSSEEECSCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEec--CCCee---Ee--ecc---------------ccccceEEcCCHHHHHH
Confidence 4899999999996444677899999996532 22221 11 111 22234666789999999
Q ss_pred HHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHHcCCCCCCC---------------------CCceeehHHHHHH
Q 015078 215 RHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRFKKIWKPPY---------------------FNRWINLKVPFHE 271 (413)
Q Consensus 215 ~f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~~~~~gi~~P~~---------------------~~~~iDl~~l~r~ 271 (413)
.|.+++..... .+ +++| + .||+ .+|..-+..+|++++ + -...+|+..++++
T Consensus 193 ~f~~~i~~~dP---Di-ivGyN~~~FDl-pyL~~Ra~~~gi~~~-lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~ 266 (775)
T 1qht_A 193 RFLRVVREKDP---DV-LITYNGDNFDF-AYLKKRCEELGIKFT-LGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRR 266 (775)
T ss_dssp HHHHHHHHHCC---SE-EEESSTTTTHH-HHHHHHHHHTTCCCC-CSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHH
T ss_pred HHHHHHHhcCC---CE-EEEeCCCCccH-HHHHHHHHHcCCCcc-cccCCCcCceeecCceeeEEecCeEEEEHHHHHHH
Confidence 99999987521 23 4444 3 7996 899888888888753 1 1235799988888
Q ss_pred hcCCCCCCHHHHHH-HcCCCCCCCC------------------CchHHHHHHHHHHHHHHH
Q 015078 272 VFGGVRCNLKEAVE-MAGLAWQGRA------------------HCGLDDAKNTARLLALLM 313 (413)
Q Consensus 272 l~~~~~~~L~~l~~-~~gI~~~g~~------------------HrALdDA~aTA~Ll~~ll 313 (413)
.+...+++|+++++ .+|....+-. +-.+.||..|.+|+.+++
T Consensus 267 ~~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 267 TINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HSCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87777899999997 5887532111 112679999999876654
No 26
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.70 E-value=8.7e-06 Score=91.49 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=49.1
Q ss_pred ccccCCchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhcccccccchhhcc
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 104 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 104 (413)
.|..++.++|++|++||++|||||| |+.++++++++.++++.|+++|+|+|.+.
T Consensus 129 DG~~~~~eLv~~A~~~G~~aiAITD--------H~~~~G~~~~~~~a~~~gIk~I~G~E~~~ 182 (1041)
T 3f2b_A 129 DAVTSVTKLIEQAKKWGHPAIAVTD--------HAVVQSFPEAYSAAKKHGMKVIYGLEANI 182 (1041)
T ss_dssp TCCSCHHHHHHHHHHTTCSCEEECC--------BSCCTTHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCCEEEEec--------ccchhhHHHHHHHHHHCCCEEEEEEEEEE
Confidence 4567899999999999999999995 67778999999999999999999999984
No 27
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0018 Score=72.33 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=101.6
Q ss_pred cEEEEEEeeCCCCCC--CCCCCcEEEEcEEEEEcCCCe----EeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCH
Q 015078 136 YFVVIDFEATCDKDK--NPYPQEIIEFPSVIVSSVTGQ----LEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 209 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~--~~~~deIIEIGAV~vd~~~g~----i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f 209 (413)
..+.||+||++..+. ++..|+||+|+.+.-. .|. +...| .+.+.. .+....|..-++.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f--~l~~~~------------~~~~~~V~~~~sE 313 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVF--TLNTCS------------PITGSMIFSHATE 313 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEE--EESCCC------------CBTTBEEEEESSH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEE--EecCCC------------CCCCCeEEECCCH
Confidence 689999999975442 3567999999987653 332 11112 122211 1233567778899
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHHcCCCCC-CCC---------------------------
Q 015078 210 SEALLRHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRFKKIWKP-PYF--------------------------- 259 (413)
Q Consensus 210 ~eVl~~f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~~~~~gi~~P-~~~--------------------------- 259 (413)
.+.|..|.+|+....- . ++++| + .||+ .+|..-++.+|++.+ .+.
T Consensus 314 ~eLL~~F~~~i~~~DP---D-IIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDP---D-VIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNV 388 (919)
T ss_dssp HHHHHHHHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCB
T ss_pred HHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCcccccccccccccccccccccee
Confidence 9999999999987421 2 34444 3 7996 899888888887631 110
Q ss_pred ----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCCC-------------------chHHHHHHHHHHHHHH
Q 015078 260 ----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRAH-------------------CGLDDAKNTARLLALL 312 (413)
Q Consensus 260 ----~~~iDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g~~H-------------------rALdDA~aTA~Ll~~l 312 (413)
.-.+|+..++++.+...+++|++++++ +|....+-+| -.+.||..+.+|+.++
T Consensus 389 ~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 389 NIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 025688888888777889999999876 4533211111 1267999999998876
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.40 E-value=0.0037 Score=63.00 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=97.3
Q ss_pred ccEEEEEEeeCCCCCCCC----CCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhh------hcCCC---h-
Q 015078 135 QYFVVIDFEATCDKDKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD------LTGIQ---Q- 200 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~----~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~------LTGIT---~- 200 (413)
-..+.||+||++ . +.| ..++||.|+.+-. .+++. ..| .+|++.... ..+.... +..++ .
T Consensus 106 l~vlsfDIEt~~-~-~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~ 178 (388)
T 1noy_A 106 VRVANCDIEVTG-D-KFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQE 178 (388)
T ss_dssp CCEEEEEEEECC-S-SCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHH
T ss_pred eEEEEEEEEeCC-C-CCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCccccccccccccccccccccc
Confidence 378999999998 2 223 2469999987533 34431 112 235442111 1111110 11111 1
Q ss_pred ----hhhcCCCCHHHHHHHHHHHHhhcCCCCccEEEEE-cC-cchHHHHHHHHHHH-cCCC-------CC--------C-
Q 015078 201 ----IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVT-WS-NWDCRVMLESECRF-KKIW-------KP--------P- 257 (413)
Q Consensus 201 ----edV~~Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~-~g-~fDir~fL~~~~~~-~gi~-------~P--------~- 257 (413)
-.|...++..+.|..|.+++....- . ++++ ++ .||+ .+|..-++. +|+. +. .
T Consensus 179 ~~~~v~v~~~~~E~~LL~~f~~~i~~~dP---D-ii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~ 253 (388)
T 1noy_A 179 ILDRVIYMPFDNERDMLMEYINLWEQKRP---A-IFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNM 253 (388)
T ss_dssp HHTTEEEEEESCHHHHHHHHHHHHHHSCC---S-EEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGG
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHHHhCC---c-EEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhh
Confidence 1224567899999999999976421 2 3443 44 7996 777777665 5521 11 0
Q ss_pred C--------C-CceeehHHHHHHh-cC-CCCCCHHHHHH-HcCCCCCCCCCc----------------hHHHHHHHHHHH
Q 015078 258 Y--------F-NRWINLKVPFHEV-FG-GVRCNLKEAVE-MAGLAWQGRAHC----------------GLDDAKNTARLL 309 (413)
Q Consensus 258 ~--------~-~~~iDl~~l~r~l-~~-~~~~~L~~l~~-~~gI~~~g~~Hr----------------ALdDA~aTA~Ll 309 (413)
+ . .-.+|+..+++.+ +. ..+++|+++++ .+|.... ..+. .+.||..|.+|+
T Consensus 254 ~g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~ 332 (388)
T 1noy_A 254 YGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAID 332 (388)
T ss_dssp GCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0167888888884 65 77899999998 6666433 2112 478999999999
Q ss_pred HHH
Q 015078 310 ALL 312 (413)
Q Consensus 310 ~~l 312 (413)
.++
T Consensus 333 ~kl 335 (388)
T 1noy_A 333 KIR 335 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 29
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.33 E-value=0.0013 Score=73.00 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=97.7
Q ss_pred cEEEEEEee-CCCCCCCCC----CCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHH
Q 015078 136 YFVVIDFEA-TCDKDKNPY----PQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLS 210 (413)
Q Consensus 136 ~fVV~D~ET-TGl~~~~~~----~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~ 210 (413)
.+++||+|| |+..++.|. .+.||+||.+ + .+|. .-..+++|.. .+..+.. |....|..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~---~~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGL---KKVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSC---EEEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCC---cEEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 789999999 764443443 3799999985 3 3442 1234566642 2222211 3334566678999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHHcCCCC---CC-C---------CCceeehHHHHHH----
Q 015078 211 EALLRHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRFKKIWK---PP-Y---------FNRWINLKVPFHE---- 271 (413)
Q Consensus 211 eVl~~f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~~~~~gi~~---P~-~---------~~~~iDl~~l~r~---- 271 (413)
+.|..|.+|+.+. . ++++| + .||+ .+|...+.++|+.. |. + ....+|+...++.
T Consensus 259 ~LL~~f~~~i~~~-----d-iivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~ 331 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----P-IVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVR 331 (847)
T ss_dssp HHHHHHHHHHTTC-----S-EEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHH
T ss_pred HHHHHHHHHhccC-----C-EEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhh
Confidence 9999999999764 3 46666 3 7996 89999999888853 21 1 1234677665532
Q ss_pred --hcC--CCCCCHHHHHH-HcCCCCCC------CC------CchHHHHHHHHHHH
Q 015078 272 --VFG--GVRCNLKEAVE-MAGLAWQG------RA------HCGLDDAKNTARLL 309 (413)
Q Consensus 272 --l~~--~~~~~L~~l~~-~~gI~~~g------~~------HrALdDA~aTA~Ll 309 (413)
.+. ..+++|+++++ .+|..... +. +-.+.||..|.+|+
T Consensus 332 ~y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 332 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122 35789999998 56643211 00 11367999999884
No 30
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.28 E-value=0.0044 Score=71.01 Aligned_cols=169 Identities=15% Similarity=0.075 Sum_probs=99.9
Q ss_pred cEEEEEEeeCCCC---CCCC----CCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCc-ch--hhhcCCChhhhcC
Q 015078 136 YFVVIDFEATCDK---DKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD-FC--KDLTGIQQIQVDR 205 (413)
Q Consensus 136 ~fVV~D~ETTGl~---~~~~----~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~-~~--~~LTGIT~edV~~ 205 (413)
..+.||+||++.. .+.| ..|+||+|+.+.....+... ...+|.....-..++ +. .+-.++....|..
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 7899999998641 1122 35899999988765322111 122222111001111 11 0111222223556
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHH-HHHcCCCCCCCC-----------------------
Q 015078 206 GVTLSEALLRHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESE-CRFKKIWKPPYF----------------------- 259 (413)
Q Consensus 206 Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~-~~~~gi~~P~~~----------------------- 259 (413)
-++..+.|..|++++....- .+ +++| + .||+ .+|..- ...+|++++.+.
T Consensus 398 ~~sE~eLL~~F~~~I~~~DP---DI-IvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~ 472 (1193)
T 2gv9_A 398 FDSEFEMLLAFMTLVKQYGP---EF-VTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSK 472 (1193)
T ss_dssp ESSHHHHHHHHHHHHHHHCC---SE-EEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------C
T ss_pred cCCHHHHHHHHHHHHHhcCC---CE-EEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccce
Confidence 67899999999999987531 23 4444 3 7996 677665 466787765321
Q ss_pred -----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCC-------------------CchHHHHHHHHHHHHHH
Q 015078 260 -----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRA-------------------HCGLDDAKNTARLLALL 312 (413)
Q Consensus 260 -----~~~iDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g~~-------------------HrALdDA~aTA~Ll~~l 312 (413)
.-.+|+..+.++.+...+++|++++++ +|....+-. +..+.||..+.+|+.++
T Consensus 473 ~~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 473 IKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024587777766667778999999975 765432111 11257899999998876
No 31
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.06 E-value=0.0061 Score=63.77 Aligned_cols=85 Identities=14% Similarity=-0.060 Sum_probs=55.7
Q ss_pred ccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHHHH--hcC-CCCCCHHHHHHHcC-----
Q 015078 228 TNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPFHE--VFG-GVRCNLKEAVEMAG----- 288 (413)
Q Consensus 228 ~n~~vV~~g~fDir~fL~~~~~~~gi~~P~-----------~~~~~iDl~~l~r~--l~~-~~~~~L~~l~~~~g----- 288 (413)
++.+|.|++-.|+ .+|...+- + ++|. +|...+||+-+... +.. ....+|..+.+.+.
T Consensus 276 ~kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~ 351 (507)
T 3d45_A 276 GKLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD 351 (507)
T ss_dssp CCEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC
T ss_pred CCeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCC
Confidence 3456677778897 67766553 2 3442 12257888765432 111 12468999999886
Q ss_pred CCC-------------CCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 289 LAW-------------QGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 289 I~~-------------~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
.|. .+..|.|-+||+.|+.+|.+|....
T Consensus 352 ~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 352 PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp CCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 232 3457999999999999999998754
No 32
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=97.04 E-value=0.00016 Score=80.74 Aligned_cols=54 Identities=6% Similarity=-0.005 Sum_probs=48.8
Q ss_pred ccccCCchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhcccccccchhhcc
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 104 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 104 (413)
-|..++.++|++|+++|+++||||| |+.+.++++++.++++.|+++|+|+|.+.
T Consensus 19 DG~~~~~elv~~A~~~Gl~alAITD--------H~~~~G~~~~~~~~~~~gIk~I~G~Ei~~ 72 (910)
T 2hnh_A 19 DGLAKTAPLVKKAAALGMPALAITD--------FTNLCGLVKFYGAGHGAGIKPIVGADFNV 72 (910)
T ss_dssp SCCSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEe--------CCcchhHHHHHHHHHHCCCeEEEEEEEEE
Confidence 4678899999999999999999995 66678999999999999999999999883
No 33
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.65 E-value=0.0042 Score=65.57 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=85.0
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHH
Q 015078 136 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 215 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~ 215 (413)
..+++|+|++++ ++...+++-|+.. . .++. + +| + +++..
T Consensus 11 ~~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i--------~---------------------~~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA--------P---------------------EPYKA 49 (540)
T ss_dssp TTCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC--------S---------------------SHHHH
T ss_pred CceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee--------h---------------------hhHHH
Confidence 459999999997 5677787766444 2 2332 1 11 0 36788
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCC
Q 015078 216 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 295 (413)
Q Consensus 216 f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~ 295 (413)
|.+|+++..+++||+ .||+ . ++|+.++ ..+|+......+.+. +++|++++++|...+ .
T Consensus 50 l~~~l~d~~kV~hn~------K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---g 107 (540)
T 4dfk_A 50 LRDLKEARGLLAKDL------SVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---T 107 (540)
T ss_dssp HTTCSSBCSTTHHHH------HHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---C
T ss_pred HHHHHcCCCEEEecc------HHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---c
Confidence 888998854455544 8885 2 6788753 467998877777777 899999999986543 3
Q ss_pred CchHHHHHHHHHHHHHHHHhc
Q 015078 296 HCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 296 HrALdDA~aTA~Ll~~ll~~g 316 (413)
|.|..||.+|.+|+..|..+.
T Consensus 108 k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 108 EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 689999999999998887765
No 34
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=96.43 E-value=0.00096 Score=65.49 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=47.9
Q ss_pred ccccCCchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhcccccccchhhc
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQ 103 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 103 (413)
-+..++.++|++|++.|.++||||| |..+.++++++.++++.+++.++|+|-.
T Consensus 25 DG~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~~i~GvEis 77 (301)
T 3o0f_A 25 DGTETPRTLVEQARKLGLHGVAIAD--------HDTTAGWDEATEASEEIGLPLLLGTEIT 77 (301)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcC--------CCccccHHHHHHHHHhcCCEEEEEEEEE
Confidence 4677899999999999999999995 7777899999998999999999999865
No 35
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.24 E-value=0.001 Score=75.98 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=48.4
Q ss_pred ccccCCchhhhhhhh--cCCceeeecccCCCCCCCCCCcCCchhhcchhhhcccccccchhhcc
Q 015078 43 TIVHPGGDAGESIHQ--LSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 104 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~--~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 104 (413)
-|..++.++|++|++ +|++|||||| |+...+.++++.++++.|+++|.|+|.+.
T Consensus 20 DG~~~~~elv~~A~~~~~G~~alAITD--------H~~~~G~~~f~~~a~~~gIk~I~G~E~~~ 75 (1220)
T 2hpi_A 20 DGAAKLQDLLKWVKETTPEDPALAMTD--------HGNLFGAVEFYKKATAMGVKPIIGYEAYV 75 (1220)
T ss_dssp TCCCCHHHHHHHHHHHCCSSCEEEEEE--------ETCCTTHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHhccCCCCEEEEEe--------cCcchhHHHHHHHHHHcCCeEEEEEEEEE
Confidence 367889999999999 9999999996 66667899999999999999999999883
No 36
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=95.69 E-value=0.0038 Score=60.40 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=46.0
Q ss_pred ccccCCchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhcccccccchhhc
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQ 103 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 103 (413)
-|..++.++|++|++.|.++||||| |..+..+++++.+.++.+++++.|+|-.
T Consensus 14 Dg~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~vi~G~Ei~ 66 (292)
T 2yb1_A 14 DGALTPTEVIDRAAARAPALLALTD--------HDCTGGLAEAAAAAARRGIPFLNGVEVS 66 (292)
T ss_dssp TCSSCHHHHHHHHHTTCCSEEEECC--------BTCCTTHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEec--------CCccccHHHHHHHHHHcCCEEEEEEEEE
Confidence 3567888999999999999999995 6666788888887888999999999876
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.61 E-value=0.17 Score=56.45 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=96.5
Q ss_pred ccEEEEEEeeCCCCCC-CC--CCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhh---------hcCCChhh
Q 015078 135 QYFVVIDFEATCDKDK-NP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD---------LTGIQQIQ 202 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~-~~--~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~---------LTGIT~ed 202 (413)
-..+.||+|++...+. ++ ..++||.|+.+ |..+.+. -.|-.+-.|.. ...++..+ -..+..+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~~~-~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDDRF-YVFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTTEE-EEEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCCEE-EEEEeeccccc--ccccccccccccccccccccccccc
Confidence 4889999999874321 12 36899999877 6444442 12211222211 11122111 11233332
Q ss_pred hc-----CCCCHHHHHHHHHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHH-cCCCC----CCCC-----------
Q 015078 203 VD-----RGVTLSEALLRHDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRF-KKIWK----PPYF----------- 259 (413)
Q Consensus 203 V~-----~Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~~~~-~gi~~----P~~~----------- 259 (413)
++ .-++..+.|.+|.+|+....- . +|++| + .||+ .+|..-++. +|+.. +.+.
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DP---D-IItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~ 257 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTP---V-ILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMY 257 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCC---S-EEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhc
Confidence 32 356889999999999986421 2 34444 3 7996 788777765 56531 1111
Q ss_pred ----------CceeehHHHHHHh-c-CCCCCCHHHHHHHcCCCCCCCCCc----------------hHHHHHHHHHHHHH
Q 015078 260 ----------NRWINLKVPFHEV-F-GGVRCNLKEAVEMAGLAWQGRAHC----------------GLDDAKNTARLLAL 311 (413)
Q Consensus 260 ----------~~~iDl~~l~r~l-~-~~~~~~L~~l~~~~gI~~~g~~Hr----------------ALdDA~aTA~Ll~~ 311 (413)
.-.+|+..+++.. + +..+++|+++++++.-.-....|. .+.||..+.+|+.+
T Consensus 258 G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 258 GSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1156888888764 2 456899999987654322111111 16799999999977
No 38
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.21 E-value=0.5 Score=51.91 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=90.9
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHH
Q 015078 136 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 215 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~ 215 (413)
..+.||+|+++- .+|++||.. + .. . +.. ..+.+.... ..+.+..|..-++..+.|..
T Consensus 154 rilsfDIE~~~~-------g~i~~I~~~--~-~~-~--~~v-~~l~~~~~~---------~~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTRH-------GELYCIGLE--G-CG-Q--RIV-YMLGPENGD---------ASSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECTT-------SCEEEEEEE--E-TT-E--EEE-EEESSCCSC---------CTTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcCC-------CCEEEEEec--C-CC-C--CeE-EEEecCCCC---------CCCCCceEEEeCCHHHHHHH
Confidence 789999999941 269999842 2 11 1 111 122221100 01223345556788999999
Q ss_pred HHHHHhhcCCCCccEEEEEc-C-cchHHHHHHHHHHHcCCCCCCC-------------C-----------CceeehHHHH
Q 015078 216 HDKWLENKGIKNTNFAVVTW-S-NWDCRVMLESECRFKKIWKPPY-------------F-----------NRWINLKVPF 269 (413)
Q Consensus 216 f~~fL~~~~lv~~n~~vV~~-g-~fDir~fL~~~~~~~gi~~P~~-------------~-----------~~~iDl~~l~ 269 (413)
|.+++....- .+ +++| + .||+ .+|..-+..+|+++- + + .-.+|+..+.
T Consensus 211 f~~~i~~~dP---Di-i~g~N~~~FD~-pyL~~Ra~~~~i~~~-lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~l 284 (786)
T 3k59_A 211 LNAWFANYDP---DV-IIGWNVVQFDL-RMLQKHAERYRLPLR-LGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEAL 284 (786)
T ss_dssp HHHHHHHHCC---SE-EEESSTTTTHH-HHHHHHHHHHTCCCC-CBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHH
T ss_pred HHHHHHHcCC---CE-EEecCCccCcH-HHHHHHHHHhCCCce-eccCCCcccccccccCCCceeEEEcCEEEEEhHHHH
Confidence 9999987531 23 4454 3 7996 888888888777531 1 0 1146777777
Q ss_pred HH-hcCCCCCCHHHHHHHc-CCCCCC-CCC-------------------chHHHHHHHHHHHHHH
Q 015078 270 HE-VFGGVRCNLKEAVEMA-GLAWQG-RAH-------------------CGLDDAKNTARLLALL 312 (413)
Q Consensus 270 r~-l~~~~~~~L~~l~~~~-gI~~~g-~~H-------------------rALdDA~aTA~Ll~~l 312 (413)
+. .+...+++|+++++++ |..-.. ..| -.+.||..+.+|+.++
T Consensus 285 k~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 285 KSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 3567789999999875 433211 111 1268999999998874
No 39
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=94.97 E-value=0.0056 Score=61.04 Aligned_cols=61 Identities=7% Similarity=-0.052 Sum_probs=48.4
Q ss_pred ccccCCchhhhhhhhcCCceeeecccCCCCCC----CCCCcCCchhhcchhhhcccccccchhhc
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPT----YQHDFGSWSTFYPDSQKVHHCQMNSFESQ 103 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~----~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 103 (413)
-+..++.+++++|++.|.++||||||....|. ....+.+|.+++..+++.+++.++|+|-.
T Consensus 31 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~Ei~ 95 (343)
T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEIT 95 (343)
T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 46678889999999999999999998655321 11345678888877888899999999876
No 40
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=91.15 E-value=0.49 Score=50.35 Aligned_cols=131 Identities=17% Similarity=0.059 Sum_probs=82.7
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHH
Q 015078 136 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 215 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~ 215 (413)
.-.++|+||+++ ++...+++-|+.. + .. + ..||.+. . .+++..
T Consensus 30 ~~~aldtE~~~~---~~~~a~Lvgisla--~-~~-~-----a~yIp~~------~-------------------~~~l~~ 72 (592)
T 3pv8_A 30 DKAALVVEVVEE---NYHDAPIVGIAVV--N-EH-G-----RFFLRPE------T-------------------ALADPQ 72 (592)
T ss_dssp SEEEEEEECCSS---SCTTCCCCEEEEE--E-TT-E-----EEEECHH------H-------------------HTTCHH
T ss_pred cCcEEEEEEcCC---ccCcccEEEEEEE--c-CC-c-----eEEEccc------h-------------------hhHHHH
Confidence 557999999997 5777777666433 2 22 2 2444111 0 234567
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC-
Q 015078 216 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ- 292 (413)
Q Consensus 216 f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~~- 292 (413)
|..|+++..+ ..++|+..+|+ .+|. ++|+.++ ..++|+.-....+-+ ..+++|++++++| |....
T Consensus 73 Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~ 140 (592)
T 3pv8_A 73 FVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRP 140 (592)
T ss_dssp HHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCC
T ss_pred HHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCch
Confidence 8888887532 34667778996 5654 5788764 357899765544444 3478999999876 44321
Q ss_pred -----C------------CCCchHHHHHHHHHHHHHHHHh
Q 015078 293 -----G------------RAHCGLDDAKNTARLLALLMHR 315 (413)
Q Consensus 293 -----g------------~~HrALdDA~aTA~Ll~~ll~~ 315 (413)
| ..+.|..||..|.+|...|..+
T Consensus 141 ~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 141 DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0134677999999988777554
No 41
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=90.16 E-value=1 Score=47.56 Aligned_cols=132 Identities=8% Similarity=0.001 Sum_probs=77.3
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 214 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~ 214 (413)
+.++++||||+. ++..+.++-||+ ++... ...|. +.. . +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~--~~~~~---~~~~~-------------------~~~--------~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGY--MNIED---HSEYK-------------------IGN--------S----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEE--EESSC---TTCEE-------------------EES--------C----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEE--EeCCc---eEEEE-------------------ech--------h----HH
Confidence 478999999985 456677888875 34211 11111 000 1 46
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCC-----CCCC-------CCc----------------eeehH
Q 015078 215 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIW-----KPPY-------FNR----------------WINLK 266 (413)
Q Consensus 215 ~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~-----~P~~-------~~~----------------~iDl~ 266 (413)
+|++|+.... ..+++|+..||. .||.+.+...|+. .|.. ... .++.+
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 7888887542 235667778996 7888888776521 1101 001 12222
Q ss_pred HHHHHhcCCCCCCHHHHHHHcCCCCCC---------------C---CCchHHHHHHHHHHHHHHHHh
Q 015078 267 VPFHEVFGGVRCNLKEAVEMAGLAWQG---------------R---AHCGLDDAKNTARLLALLMHR 315 (413)
Q Consensus 267 ~l~r~l~~~~~~~L~~l~~~~gI~~~g---------------~---~HrALdDA~aTA~Ll~~ll~~ 315 (413)
..++.+ +.+|+.+++.|+++... . .+-.+.|++.|++++...+..
T Consensus 121 Ds~~~~----~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 121 DSLKKL----PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp EHHHHS----CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHhhh----hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222221 46999999999986210 0 012478999999998876543
No 42
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=89.46 E-value=3.6 Score=41.95 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=78.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHH
Q 015078 135 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 214 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~ 214 (413)
...|.||+||++. ++...++.-|. +-..+ . ..+|.|.. +. +.+.
T Consensus 129 ~~~vavDtE~~~~---~~~~~~l~lIQ---La~~~-~-----~~lidpl~---l~---------------------~~l~ 172 (428)
T 3saf_A 129 CQEFAVNLEHHSY---RSFLGLTCLMQ---ISTRT-E-----DFIIDTLE---LR---------------------SDMY 172 (428)
T ss_dssp CSEEEEEEEEECT---TCSSCEEEEEE---EECSS-C-----EEEEETTT---TG---------------------GGGG
T ss_pred CCeEEEEEEecCC---CCCCCeEEEEE---EEeCC-c-----EEEEEecc---ch---------------------hhHH
Confidence 4789999999976 44555543332 21122 1 24666652 21 1233
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCC
Q 015078 215 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQG 293 (413)
Q Consensus 215 ~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g 293 (413)
.|.+++++..+ .-|.|+..+|+ ..|. +..|+.. ...+||.... .+.+...++|++++++ +|+....
T Consensus 173 ~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~----~~~fDT~lAa-~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 173 ILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYV----VNMFDTHQAA-RLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp GGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCC----SSEEEHHHHH-HHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred HHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCc----CceeechhHH-HHhCCCCCCHHHHHHHHcCCCCCc
Confidence 45566776432 23566678896 4553 2568763 2478987544 4555446899999865 5665421
Q ss_pred C---------------CCchHHHHHHHHHHHHHHHHhc
Q 015078 294 R---------------AHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 294 ~---------------~HrALdDA~aTA~Ll~~ll~~g 316 (413)
. .+-|..||..+.+|+..|..+.
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1336789999999988876653
No 43
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=89.03 E-value=0.13 Score=47.20 Aligned_cols=54 Identities=6% Similarity=-0.105 Sum_probs=36.7
Q ss_pred cccCCchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchh-h----cchh--hhcccccccchhhcc
Q 015078 44 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWST-F----YPDS--QKVHHCQMNSFESQF 104 (413)
Q Consensus 44 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~-~----~~~~--~k~~~~~~~g~e~~~ 104 (413)
+..++.++|++|++-|-++|+||||... ...++. . ..+. +..+++++.|+|-.+
T Consensus 16 g~~~~~e~v~~A~~~Gl~~iaiTDH~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~~G~Ei~~ 76 (245)
T 1m65_A 16 AYSTLSDYIAQAKQKGIKLFAITDHGPD-------MEDAPHHWHFINMRIWPRVVDGVGILRGIEANI 76 (245)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEEEEECTT-------STTCCCTHHHHGGGGSCSEETTEEEEEEEEEEB
T ss_pred CCCcHHHHHHHHHHCCCCEEEECCCCCC-------CCCCcHHHHHHHHHHHHHhcCCCeEEEEEEeee
Confidence 3446779999999999999999987651 111111 1 1212 336889999999774
No 44
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=88.72 E-value=0.12 Score=54.65 Aligned_cols=61 Identities=3% Similarity=-0.158 Sum_probs=39.8
Q ss_pred cccCCchhhhhhhhcCCceeeecccCCCCCCCCCC-cCCchhh---cchh-hh-cccccccchhhcc
Q 015078 44 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHD-FGSWSTF---YPDS-QK-VHHCQMNSFESQF 104 (413)
Q Consensus 44 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~-~q~~p~~---~~~~-~k-~~~~~~~g~e~~~ 104 (413)
|..++.+++++|+++|.++|+||||.......++. ...++++ +.+. ++ .++++++|+|..+
T Consensus 350 G~~t~ee~v~~A~~~G~~~iaiTDH~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~i~i~~G~Ei~~ 416 (575)
T 3b0x_A 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAEVDI 416 (575)
T ss_dssp CSCCHHHHHHHHHHTTCSEEEEEEECTTTTTSSCSCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCCEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 44577899999999999999999877663211100 0122222 2222 23 4899999999874
No 45
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=87.64 E-value=1.8 Score=44.19 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=64.7
Q ss_pred hhhcCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHH
Q 015078 201 IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPF 269 (413)
Q Consensus 201 edV~~Ap~f~eVl~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~-----------~~~~~iDl~~l~ 269 (413)
+.+.++..|..|++.+.+ + ++.+|.|+.-.|+ -++...+ .| ++|. +|...+||+-++
T Consensus 262 ~~l~~~~Gfr~V~~~L~~----s----~KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la 329 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN----S----GKLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMA 329 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH----H----CCEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh----C----CCceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhh
Confidence 345666677777766554 2 2455666667896 5555443 22 3442 123578987766
Q ss_pred HHh-cC--CCCCCHHHHHHHcCCC------------------CCCCCCchHHHHHHHHHHHHHHHHhc
Q 015078 270 HEV-FG--GVRCNLKEAVEMAGLA------------------WQGRAHCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 270 r~l-~~--~~~~~L~~l~~~~gI~------------------~~g~~HrALdDA~aTA~Ll~~ll~~g 316 (413)
... +. ....+|.++.+.+.-. ..+..|.|-+||+.|+.+|.+|....
T Consensus 330 ~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 330 STQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp TSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 332 11 1245899988866421 12356999999999999999998763
No 46
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=86.87 E-value=0.19 Score=46.64 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=38.7
Q ss_pred cccCCchhhhhhhhcCCceeeecccCCCCC---CCCC-CcCCchhh----cchhhhc-ccccccchhhcc
Q 015078 44 IVHPGGDAGESIHQLSSEFVEYSNEFYNNP---TYQH-DFGSWSTF----YPDSQKV-HHCQMNSFESQF 104 (413)
Q Consensus 44 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~---~~h~-~~q~~p~~----~~~~~k~-~~~~~~g~e~~~ 104 (413)
|..++.++|++|++-|-++||||||..... ...+ ....++.+ ....++. +++++.|+|..+
T Consensus 14 G~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~i~~G~Ei~~ 83 (267)
T 2yxo_A 14 AEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLEADF 83 (267)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCCCCcccCccccccHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 556778999999999999999998766520 0000 00112222 1222332 899999999874
No 47
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=75.27 E-value=6.4 Score=35.97 Aligned_cols=89 Identities=13% Similarity=-0.027 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcCCCCccEEEE-EcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC---CCCCHHHHHH-Hc
Q 015078 213 LLRHDKWLENKGIKNTNFAVV-TWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG---VRCNLKEAVE-MA 287 (413)
Q Consensus 213 l~~f~~fL~~~~lv~~n~~vV-~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~---~~~~L~~l~~-~~ 287 (413)
+..|.++|.+.. +..| |..+.|+ ..|.+ ..|+.. ..++|+..++...++. .+.+|..+++ .+
T Consensus 97 L~~L~~lL~d~~-----i~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~l 163 (206)
T 1vk0_A 97 LKDLYRFFASKF-----VTFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVL 163 (206)
T ss_dssp GHHHHHHHTCSS-----SEEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHhcCCC-----ceEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHh
Confidence 445677887753 3334 4458897 45543 456642 4689998887776663 4678999886 46
Q ss_pred CCCC-CC--------------CCCchHHHHHHHHHHHHHHHH
Q 015078 288 GLAW-QG--------------RAHCGLDDAKNTARLLALLMH 314 (413)
Q Consensus 288 gI~~-~g--------------~~HrALdDA~aTA~Ll~~ll~ 314 (413)
|++. .. +-+-|..||..+.+|+.+|.+
T Consensus 164 g~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 164 WSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7766 10 225588999999999999865
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=73.59 E-value=1.1 Score=47.20 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=39.7
Q ss_pred cccCCchhhhhhhhcCCceeeecccCCCCCCCCC-CcCCchhhcc---hhhhcccccccchhhcc
Q 015078 44 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQH-DFGSWSTFYP---DSQKVHHCQMNSFESQF 104 (413)
Q Consensus 44 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~-~~q~~p~~~~---~~~k~~~~~~~g~e~~~ 104 (413)
|..++.++|++|++.|.++|+||||....+..++ ....+.+++. ..++.+++++.|+|..+
T Consensus 340 G~~t~eemv~~A~~~Gl~~IaiTDH~~~~~~~~~~~~~~~~~~~~~i~~l~~~gi~il~GiEv~i 404 (578)
T 2w9m_A 340 GGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQRAGLPIVAGSEVDI 404 (578)
T ss_dssp CSSCHHHHHHHHHHTTCSEEEECEEBTTCGGGTCBCHHHHHHHHHHHHHHHHTTCCEECEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCeEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHhcCCeEEEeeeecc
Confidence 5567889999999999999999987665311110 0012222212 22223999999999884
No 49
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=72.59 E-value=20 Score=35.31 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCC
Q 015078 214 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQ 292 (413)
Q Consensus 214 ~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~-gI~~~ 292 (413)
..|.+++++..+ .-|.|+..+|+ ..|.+ ..|+.. ..++||......+-+..+++|+++++.| |+...
T Consensus 64 ~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~ 131 (375)
T 1yt3_A 64 SPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELP----QPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 (375)
T ss_dssp HHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCC----SSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCC----CcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCC
Confidence 456777877432 23566678896 55643 357754 2578997655443233478999999877 76542
Q ss_pred C---------CC------CchHHHHHHHHHHHHHHHHhc
Q 015078 293 G---------RA------HCGLDDAKNTARLLALLMHRG 316 (413)
Q Consensus 293 g---------~~------HrALdDA~aTA~Ll~~ll~~g 316 (413)
. ++ +-|..||..+.+|+..|.++.
T Consensus 132 K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp CTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 225679999999888877653
No 50
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=65.48 E-value=20 Score=31.79 Aligned_cols=93 Identities=18% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCC
Q 015078 214 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAW 291 (413)
Q Consensus 214 ~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~ 291 (413)
..+.+++++..+ .-+.|+...|+ ..|. +..|+.. .+ ++|+..++..+.+ ..+++|+++++.| |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~---~~~gi~~---~~-~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLL---RDFDVKL---ES-FVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHH---HHHCCCC---CS-EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHH---HHCCCCC---CC-EEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 346667776422 23445557775 4443 2367764 23 7896566666654 4578999999887 6543
Q ss_pred C-----------CCC------CchHHHHHHHHHHHHHHHHhccc
Q 015078 292 Q-----------GRA------HCGLDDAKNTARLLALLMHRGFK 318 (413)
Q Consensus 292 ~-----------g~~------HrALdDA~aTA~Ll~~ll~~g~~ 318 (413)
. .++ +-|..||.++.+|+..|.++..+
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 111 23668999999999988776543
No 51
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=61.04 E-value=1.2 Score=41.55 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.8
Q ss_pred ccccCCchhhhhhhhcCCceeeecccC
Q 015078 43 TIVHPGGDAGESIHQLSSEFVEYSNEF 69 (413)
Q Consensus 43 ~~~~~~~~~i~~~~~~g~~aiait~~~ 69 (413)
-+..++.+++++|++.|-+.|+||||.
T Consensus 32 Dg~~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 32 DGHLPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcCCC
Confidence 356678899999999999999999875
No 52
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=58.20 E-value=6.8 Score=40.12 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=58.7
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHH
Q 015078 136 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 215 (413)
Q Consensus 136 ~fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~ 215 (413)
.-.=+|+|..- .+-+||+ ++-+.+|+. .|.|=+|.........++--|||.-.||.+|.| -.+..
T Consensus 392 ~ttWiDIEG~p--------~DPVE~A--iyQP~~g~Y---iHcyR~P~D~K~FK~~SkysHGillkDl~~aqP--GL~S~ 456 (577)
T 3mwp_A 392 AKTWMDIEGRP--------EDPVEIA--LYQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSA 456 (577)
T ss_dssp SCEEEEEESCT--------TSCSEEE--EEETTTTEE---EEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--THHHH
T ss_pred CCeEEecCCCC--------CCCeEEE--EeccCCCcE---EEEecCCcchhhhcccCccccceehhhhhhcCC--chHHH
Confidence 44668999873 3457885 456678886 477888975323445667789999999998776 23444
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHH
Q 015078 216 HDKWLENKGIKNTNFAVVTWSNWDCRVMLE 245 (413)
Q Consensus 216 f~~fL~~~~lv~~n~~vV~~g~fDir~fL~ 245 (413)
+++.|-. +.++-+.|+-||+..|+
T Consensus 457 vi~~LP~------~mV~T~QGsdDI~kLld 480 (577)
T 3mwp_A 457 VIDALPR------NMVITCQGSDDIRKLLE 480 (577)
T ss_dssp HHHHSCT------TCEEEESSHHHHHHHHH
T ss_pred HHHhCCc------CcEEEeeChHHHHHHHH
Confidence 4444543 44555678878765554
No 53
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=52.79 E-value=62 Score=32.38 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCC
Q 015078 214 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQ 292 (413)
Q Consensus 214 ~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~-gI~~~ 292 (413)
..|.+++++..+ .-|.|+...|+ ..|.+ ..|+... .++||.... .+.+..+++|+.+++.| |+...
T Consensus 149 ~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~~----~~fDt~lAa-~LL~~~~~~L~~L~~~~lg~~l~ 215 (410)
T 2hbj_A 149 HILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYVV----GLFDTYHAS-KAIGLPRHSLAYLLENFANFKTS 215 (410)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCCS----SEEEHHHHH-HHHTCSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCcC----CEEEcHHHH-HHhCCCccCHHHHHHHHcCCCCC
Confidence 346667776422 23566678886 45542 3577642 378997544 45554468999999887 65432
Q ss_pred C---------CC------CchHHHHHHHHHHHHHHHHhcc
Q 015078 293 G---------RA------HCGLDDAKNTARLLALLMHRGF 317 (413)
Q Consensus 293 g---------~~------HrALdDA~aTA~Ll~~ll~~g~ 317 (413)
. +. +-|..||..+.+|+..|.++..
T Consensus 216 K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 216 KKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 2267899999999888776543
No 54
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=50.96 E-value=56 Score=33.02 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 015078 213 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 291 (413)
Q Consensus 213 l~~f~~fL~~~~lv~~n~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~iDl~~l~r~l~~~~~~~L~~l~~~~-gI~~ 291 (413)
+..|.+++++. ..|.|+...|+ ..|+ ..|+..+ ..+|+. +...+++..+++|+.+++.| |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~~----~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEPQ----RLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCCC----EEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcCC----ceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 34567777763 24667777886 4553 5677542 578995 55566654478999999987 6432
Q ss_pred C---------CCC------CchHHHHHHHHHHHHHHHHh
Q 015078 292 Q---------GRA------HCGLDDAKNTARLLALLMHR 315 (413)
Q Consensus 292 ~---------g~~------HrALdDA~aTA~Ll~~ll~~ 315 (413)
. .+. ..|..||..+.+|+..|.++
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 23678999999888877654
No 55
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=38.38 E-value=56 Score=33.04 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=35.4
Q ss_pred ccEEEEEEeeCCCCCCCC----------------------CCCcEEEEcEEEEEcCC---CeEeeEEEEEEeCC
Q 015078 135 QYFVVIDFEATCDKDKNP----------------------YPQEIIEFPSVIVSSVT---GQLEACFQTYVRPT 183 (413)
Q Consensus 135 ~~fVV~D~ETTGl~~~~~----------------------~~deIIEIGAV~vd~~~---g~i~dsF~~~VkP~ 183 (413)
.+||++|+|.||+..... ..-.|||+|...++... ......|+.++=|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 489999999999942111 12469999999997422 34578899988775
No 56
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=36.65 E-value=8.5 Score=41.15 Aligned_cols=23 Identities=9% Similarity=-0.237 Sum_probs=10.5
Q ss_pred CCCCceeecCCCcccCCCcccceeecCC
Q 015078 384 KQGSVFFGCGNWTVTRGARCHFFEWAFT 411 (413)
Q Consensus 384 ~qg~~f~~c~~~~~~~~~~c~~f~w~~~ 411 (413)
..|+.||||.||+ .|.|-.|..|
T Consensus 589 k~G~~f~gCs~yp-----~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKIFL-----GRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEEEC---------------
T ss_pred cCCCeEEeCCCCc-----CCCCeecCCc
Confidence 4688999999882 4999999765
No 57
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=35.83 E-value=8.2 Score=35.52 Aligned_cols=54 Identities=2% Similarity=-0.118 Sum_probs=33.1
Q ss_pred hhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchh------hhcccccccchhhcc
Q 015078 50 DAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDS------QKVHHCQMNSFESQF 104 (413)
Q Consensus 50 ~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~------~k~~~~~~~g~e~~~ 104 (413)
+++++|.+-|-+.|++|||.... ........+...+... ...++++..|+|..+
T Consensus 28 e~i~~A~~~Gi~~i~~TdH~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~E~~~ 87 (247)
T 2wje_A 28 ALLAESYRQGVRTIVSTSHRRKG-MFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYY 87 (247)
T ss_dssp HHHHHHHHTTEEEEECCCEEBTT-TBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCCEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEeeEEee
Confidence 69999999999999999876531 1111111111222221 123688999999885
No 58
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=35.70 E-value=8.4 Score=36.73 Aligned_cols=25 Identities=4% Similarity=-0.254 Sum_probs=21.8
Q ss_pred CCchhhhhhhhcCCceeeecccCCC
Q 015078 47 PGGDAGESIHQLSSEFVEYSNEFYN 71 (413)
Q Consensus 47 ~~~~~i~~~~~~g~~aiait~~~~~ 71 (413)
++.++|++|.+-|-+.|+||||.-.
T Consensus 19 ~~~e~~~~A~~~G~~~i~~TdH~~~ 43 (283)
T 3dcp_A 19 DVEEMVLKAIELDFDEYSIVEHAPL 43 (283)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCC
Confidence 5679999999999999999987644
No 59
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.73 E-value=13 Score=36.24 Aligned_cols=43 Identities=28% Similarity=0.746 Sum_probs=29.3
Q ss_pred cc-ccccceecCCCcCcceeccCCCCCCCceeecC----CCcccCCCcccc
Q 015078 360 IF-QYHPSCFCGVKSSKGMVRKPGPKQGSVFFGCG----NWTVTRGARCHF 405 (413)
Q Consensus 360 ~~-~~~~~c~cg~~~~~~~~~~~gp~qg~~f~~c~----~~~~~~~~~c~~ 405 (413)
|+ +++|+ ||-....++|+.-|..+|..|.-|+ -|...| .+|+|
T Consensus 180 ~~~~~CPv--CGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-~~C~~ 227 (309)
T 2fiy_A 180 ESRTLCPA--CGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-IKCSH 227 (309)
T ss_dssp TTCSSCTT--TCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-TSCSS
T ss_pred ccCCCCCC--CCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-cCCcC
Confidence 65 57776 7888888888776778898888886 477664 56764
No 60
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=32.64 E-value=55 Score=30.35 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEEEeCCCCCCCCcchhhhcCCChhhhcCCCCHHHHHHHH
Q 015078 137 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 216 (413)
Q Consensus 137 fVV~D~ETTGl~~~~~~~deIIEIGAV~vd~~~g~i~dsF~~~VkP~~~p~Ls~~~~~LTGIT~edV~~Ap~f~eVl~~f 216 (413)
-.=+|+|.+- .+-+||+ ++-+.+|+. .+.|=+|.........++--|||.-.||.+|.| -.+..+
T Consensus 59 ttWiDIEG~p--------~DPVElA--iyQP~sg~Y---IHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~v 123 (243)
T 3q7c_A 59 KTWMDIEGRP--------EDPVEIA--LYQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAV 123 (243)
T ss_dssp CCEEEEESCT--------TSCSEEE--EEETTTTEE---EEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHH
T ss_pred CeEEecCCCC--------CCCeEEE--EeccCCCcE---EEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHH
Confidence 3458999873 3457885 456678886 477778875223445667789999999998877 334444
Q ss_pred HHHHhhcCCCCccEEEEEcCcchHHHHHH
Q 015078 217 DKWLENKGIKNTNFAVVTWSNWDCRVMLE 245 (413)
Q Consensus 217 ~~fL~~~~lv~~n~~vV~~g~fDir~fL~ 245 (413)
++.|-. |.++-+.|+-||+..|.
T Consensus 124 i~~LP~------nMVlT~QGsDDIrkLld 146 (243)
T 3q7c_A 124 IDALPR------NMVITCQGSDDIRKLLE 146 (243)
T ss_dssp HHHSCT------TCEEEESSHHHHHHHHH
T ss_pred HHhCCc------CcEEEeeChHHHHHHHH
Confidence 555543 44555578888865554
No 61
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=29.84 E-value=14 Score=33.41 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=21.1
Q ss_pred cccCCchhhhhhhhcCCceeeecccCC
Q 015078 44 IVHPGGDAGESIHQLSSEFVEYSNEFY 70 (413)
Q Consensus 44 ~~~~~~~~i~~~~~~g~~aiait~~~~ 70 (413)
++| +.+++++|+++ .+.||||||+.
T Consensus 13 hvh-~~e~~~~A~~~-~~~i~itdH~~ 37 (212)
T 1v77_A 13 DIR-DKEAYELAKEW-FDEVVVSIKFN 37 (212)
T ss_dssp EEC-SHHHHHHHHHH-CSEEEEEEEES
T ss_pred CcC-HHHHHHHHHHH-hcEEEEeeccC
Confidence 344 88999999999 99999997644
No 62
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=28.70 E-value=8.2 Score=36.40 Aligned_cols=60 Identities=5% Similarity=-0.096 Sum_probs=34.7
Q ss_pred cccCCch---hhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcch----hh--hcccccccchhhcc
Q 015078 44 IVHPGGD---AGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPD----SQ--KVHHCQMNSFESQF 104 (413)
Q Consensus 44 ~~~~~~~---~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~----~~--k~~~~~~~g~e~~~ 104 (413)
|..+..+ ++++|.+-|-+.|++|||-......+ ......+.+.. .+ ..++++..|+|-.+
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~-~~~~i~~~~~~l~~~~~~~~~~i~I~~G~Ev~~ 83 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKN-EPAAVREAADQLNKRLIKEDIPLHVLPGQEIRI 83 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEEC-CHHHHHHHHHHHHHHHHHTTCCCEEECCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCEEecCeEEec
Confidence 3344554 99999999999999997643210000 11112222221 11 24678889999874
Done!