BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015080
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 182/338 (53%), Gaps = 14/338 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+ GGAGYIGSHA +L+ + V +VDNL G+ A+ +F DL
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAIT---------EGAKFYNGDLR 54
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + F++ +AVMHFAA + VG S PL+YY+N L +LE M VD I
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI 114
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+SST ATYGE + ITEET P N YG+ K E ++ +S+ S++ I RYFNV G
Sbjct: 115 FSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAG 174
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+ P G +GE RPE + A G + + G DY+T DGTC+RDYI V DL
Sbjct: 175 ATPNGIIGEDHRPET----HLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 313 VDAHVKALERAQP-KKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEV 371
V AH L+ Q + YN+G G G SVKE V+A ++ T+ I PRR GD A +
Sbjct: 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARL 290
Query: 372 YSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+ K + +L W +Y N++ +E AW W + GY
Sbjct: 291 VASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 227 bits (579), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/342 (38%), Positives = 183/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SST YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 183/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS+ YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPACWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 183/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS+ YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 183/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS+ YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 182/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 182/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 182/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS YG+ K+P E P P +PYGK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 183/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS+ YG+ K+P E P P +P+GK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 182/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS YG+ K+P E P P +P+GK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 182/342 (53%), Gaps = 13/342 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+ + + ++A D V+HFA + VGES PL+YY N + TL ++ +M V I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 193 YSSTCATYGEPEKMPITEETPQA-PINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNV 250
+SS YG+ K+P E P P +P+GK+K M E I+ D K D ++ +LRYFN
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 251 IGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
+G+ P G +GE P+ P + A G L + G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 309 VNDLVDAHVKALER-AQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V DL D HV A+E+ A V IYN+G G G SV + V A KA + + PRR GD
Sbjct: 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGD 295
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++D +K ELNW T L E + W WQ H GY
Sbjct: 296 LPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 187/348 (53%), Gaps = 15/348 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS---RGNIGAVKVLQELFPEPGR-LQFIY 128
VLVTGGAGYIGSH L LL+ Y ++DN RG + L+ + GR ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D A+ + F + +F AV+HFA + VGES PL YY + T+ +LE M HGV
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSK-NSDMAVMILR 246
L++SS+ YG P+ +P+ E P NPYGK+K E++I D + + V++LR
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLR 184
Query: 247 YFNVIGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
YFN G+ G +GE P+ P + A G L V G DY T DGT VR
Sbjct: 185 YFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 305 DYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
DYI V DL H+ AL + + + IYN+GTG G SV + V+A +KA+ I R
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
R GD A Y++P+ + EL WTA L E WRWQK + G+ +
Sbjct: 300 REGDVAACYANPSLAQEELGWTAA-LGLDRMCEDLWRWQKQNPSGFGT 346
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 187/348 (53%), Gaps = 15/348 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS---RGNIGAVKVLQELFPEPGR-LQFIY 128
VLVTGGAGYIGSH L LL+ Y ++DN RG + L+ + GR ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D A+ + F + +F AV+HFA + +GES PL YY + T+ +LE M HGV
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSK-NSDMAVMILR 246
L++SS+ YG P+ +P+ E P NPYGK+K E++I D + + V++LR
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLR 184
Query: 247 YFNVIGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
YFN G+ G +GE P+ P + A G L V G DY T DGT VR
Sbjct: 185 YFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 305 DYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
DYI V DL H+ AL + + + IYN+GTG G SV + V+A +KA+ I R
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
R GD A Y++P+ + EL WTA L E WRWQK + G+ +
Sbjct: 300 REGDVAACYANPSLAQEELGWTAA-LGLDRMCEDLWRWQKQNPSGFGT 346
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 186/348 (53%), Gaps = 15/348 (4%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS---RGNIGAVKVLQELFPEPGR-LQFIY 128
VLVTGGAGYIGSH L LL+ Y ++DN RG + L+ + GR ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D A+ + F + +F AV+HFA + VGES PL YY + T+ +LE M HGV
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPI-NPYGKAKKMAEDIILDFSK-NSDMAVMILR 246
L++SS+ YG P+ +P+ E P NPYGK+K E++I D + + ++LR
Sbjct: 125 KNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLR 184
Query: 247 YFNVIGSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
YFN G+ G +GE P+ P + A G L V G DY T DGT VR
Sbjct: 185 YFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 305 DYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
DYI V DL H+ AL + + + IYN+GTG G SV + V+A +KA+ I R
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 411
R GD A Y++P+ + EL WTA L E WRWQK + G+ +
Sbjct: 300 REGDVAACYANPSLAQEELGWTAA-LGLDRMCEDLWRWQKQNPSGFGT 346
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 184/356 (51%), Gaps = 17/356 (4%)
Query: 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRL 124
Q E VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L +
Sbjct: 6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HI 63
Query: 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA 184
F DL D K + K F E D+V+HFA + VGEST PL+YYHN T+V+LE M
Sbjct: 64 PFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQ 123
Query: 185 RHGVDTLIYSSTCATYGE----PEKMPITEETPQAPINPYGKAKKMAEDIILDF--SKNS 238
++ V ++SS+ YG+ P +PI EE P P NPYG K E+I+ D S
Sbjct: 124 QYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKK 183
Query: 239 DMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTA 298
ILRYFN IG+ P G +GE P L + A G L + G DY +
Sbjct: 184 SWKFAILRYFNPIGAHPSGLIGEDP---LGIPNNLLPYMAQVAVGRREKLYIFGDDYDSR 240
Query: 299 DGTCVRDYIDVNDLVDAHVKALE--RAQPKKVGI---YNVGTGKGRSVKEFVEACKKATS 353
DGT +RDYI V DL H+ AL+ A + G+ +N+G+GKG +V E A KA+
Sbjct: 241 DGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASG 300
Query: 354 ANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
++ RR GD + + P + + EL W + +++S + W+W + GY
Sbjct: 301 IDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTE-LQVEDSCKDLWKWTTENPFGY 355
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 183/341 (53%), Gaps = 12/341 (3%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTGGAGYIGSH A+ LL Y V I DNL A+ ++++ + F D+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTP--AFHETDVS 65
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D +A+ + F + A +HFAA+ VGES P++YY N + L +L M V ++
Sbjct: 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIV 125
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVI 251
+SS+ YG PE+ PI E P + NPYG+ K MAE I+ D + + V LRYFN +
Sbjct: 126 FSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPV 185
Query: 252 GSDPEGRLGEAPR--PELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
G+ G +GE P P + A G + L+V G+DY T DGT VRDYI V
Sbjct: 186 GAHESGLIGEDPAGIPN-----NLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHV 240
Query: 310 NDLVDAHVKALERAQPKKVGI-YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDY 368
DL H+ AL+ + + + N+GTG+G SV E V A +KA+ + RRPGD
Sbjct: 241 VDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDV 300
Query: 369 AEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
AE Y++P + W A+ +L+ WRWQ+++ G+
Sbjct: 301 AECYANPAAAAETIGWKAE-RDLERMCADHWRWQENNPRGF 340
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 198/381 (51%), Gaps = 43/381 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNL-----------SRGNIGAVKVLQELFPE 120
VLV GGAGYIGSH LL+D+ + V IVD+L +R N+ A K+ Q P+
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENV-ARKLQQSDGPK 63
Query: 121 PGRL-QFIYADLGDAKA---VNKFFSENA-FDAVMHFAAVAYVGESTLDPLKYYHNITSN 175
P ++ ++GD + +N F+ + DAV+H A VGES DPLKYY N
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 176 TLVVLESMARHGVDTLIYSSTCATYGEP-------EKMPITEETPQAPINPYGKAKKMAE 228
L +L++M H D +I+SS+ A +G P PI ++P +PYG++K +AE
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 229 DIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELRE----HGRISGACFDAARGI 284
+I D ++ + + LRYFN G+ +G +GE + GR+ R
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243
Query: 285 I-------AGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKAL---ERAQP----KKVGI 330
I + + GTDY T DGTCVRDY+ V DL AH+ AL E+ P K +
Sbjct: 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSV 303
Query: 331 YNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTN 390
+N+GT +G SV+E +E +K T I V RR GD A + + K R L W KY
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363
Query: 391 LQESLEIAWRWQKSHRGGYAS 411
L+ +E +W++Q++H GYAS
Sbjct: 364 LEAIMETSWKFQRTHPNGYAS 384
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 152/330 (46%), Gaps = 35/330 (10%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTGGAG+IGSH LL V ++DNL+ G V P + F DL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---------PKGVPFFRVDLR 53
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + V + F E V H AA A V S DP+ + L +LE+ ++GV+ L+
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 193 YSST-CATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
++ST A YGE PE E P P +PY +K E + + ++ + + LRY NV
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNV 173
Query: 251 IG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST-ADGTCVRDYI 307
G DP G G A F A ++ GL V T D CVRDY+
Sbjct: 174 YGPRQDPHGEAGVV-------------AIF--AERVLKGLPVTLYARKTPGDEGCVRDYV 218
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD 367
V D+ +AH AL + GIYNVGTG+G + +E + A +A +V P RPGD
Sbjct: 219 YVGDVAEAHALALFSLE----GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGD 274
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESLEI 397
P K+ + W K QE + +
Sbjct: 275 LERSVLSPLKL-MAHGWRPK-VGFQEGIRL 302
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 147/334 (44%), Gaps = 51/334 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGGAG +GS+ L + + ++DN + G +E+ P L I +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK-------REVLPPVAGLSVIEGSVT 75
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSN---TLVVLESMARHGVD 189
DA + + F V+H AA AY DP + + +N ++ V ++ ++ GV
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAA-AY-----KDPDDWAEDAATNVQGSINVAKAASKAGVK 129
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
L+ T YG P +PI ++P AP YG +K E ++ SD+ V+ LR N
Sbjct: 130 RLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLAN 185
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
V G RL P P + + CF + VRD++D+
Sbjct: 186 VTGP----RLAIGPIPTFYKRLKAGQKCFCS--------------------DTVRDFLDM 221
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPG--D 367
+D + +L+ +P G++NV TG+G S+KE + A + PG D
Sbjct: 222 SDFLAIADLSLQEGRP--TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADD 279
Query: 368 YAEVYSDPTKIRLELNWTAKYTNLQESL--EIAW 399
V DP+K E W AK + ++++ ++AW
Sbjct: 280 VPSVVLDPSKTETEFGWKAK-VDFKDTITGQLAW 312
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 131/282 (46%), Gaps = 36/282 (12%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
++ ++VTGGAG+IGSH +L +S + ++DNLS GN +E E RL + A
Sbjct: 1 MSLIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGN-------EEFVNEAARL--VKA 50
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
DL A + + + V H AA V +P + Y N T +LE+M + GV
Sbjct: 51 DLA-ADDIKDYLK--GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++++ST YGE + +P E+ P PI+ YG +K E +I + DM I R+ N
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 250 VIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDV 309
VIG HG I R L++ G +G + YI +
Sbjct: 168 VIGRRS-------------THGVIYDFIMKLKRN-PEELEILG------NGEQNKSYIYI 207
Query: 310 NDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVE-ACKK 350
+D VDA + L ++V I+N+G+ VK E C++
Sbjct: 208 SDCVDAMLFGLR--GDERVNIFNIGSEDQIKVKRIAEIVCEE 247
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 120/254 (47%), Gaps = 39/254 (15%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGSH +L++ Y V +VDNLS G V EL DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVR---------DL 52
Query: 132 GDAKAVNKFFSENAF---DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D +S A D V HFAA V ST +P+ +++ T VLE + GV
Sbjct: 53 KD-------YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV 105
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
T++++S+ YG+ + +P EE P PI+ YG AK E + +++ + + +RY
Sbjct: 106 RTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
NV+G P LR HG I R L+V G DGT + Y+
Sbjct: 166 NVVG------------PRLR-HGVIYDFIMKLRRNPNV-LEVLG------DGTQRKSYLY 205
Query: 309 VNDLVDAHVKALER 322
V D V+A + A ++
Sbjct: 206 VRDAVEATLAAWKK 219
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 146/340 (42%), Gaps = 49/340 (14%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TGGAG+IG H A L+ VT++D+L + + P G +F+
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLR---------VPPMIPPEGTGKFL---- 55
Query: 132 GDAKAVNKFFSENAFDA--VMHFAAVAYVGESTLDPLKYYHNITS--NTLVVLESMARHG 187
K V + + D V H A+ V S PL Y N+ S + L + S+ G
Sbjct: 56 --EKPVLELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSV---G 110
Query: 188 VDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMA--VMIL 245
V ++ STC YG+ + +P E++P +P +PY A K+ +++ + + +A V I+
Sbjct: 111 VPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYA-ASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
R+FNV G P R + C A L + DG RD
Sbjct: 170 RFFNVYG------------PGERPDALVPRLC--------ANLLTRNELPVEGDGEQRRD 209
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
+ + D+VD V R P + N G+G+ SV + + +ATS +V + RP
Sbjct: 210 FTYITDVVDKLVALANRPLPS---VVNFGSGQSLSVNDVIRIL-QATSPAAEVARKQPRP 265
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
+ E +D ++ + ++E + + W +S
Sbjct: 266 NEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSR 305
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
++VTGGAG+IGSH +L++ Y V +VD + R G+ + DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSA-------------ELHVRDL 48
Query: 132 GDAKAVNKFFSENAF---DAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D +S A D V HFAA V ST +P+ +++ T VLE + GV
Sbjct: 49 KD-------YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV 101
Query: 189 DTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
T++++S+ YG+ + +P EE P PI+ YG AK E + +++ + + +RY
Sbjct: 102 RTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYID 308
NV+G P LR HG I R L+V G DGT + Y+
Sbjct: 162 NVVG------------PRLR-HGVIYDFIMKLRRNPNV-LEVLG------DGTQRKSYLY 201
Query: 309 VNDLVDAHVKALER 322
V D V+A + A ++
Sbjct: 202 VRDAVEATLAAWKK 215
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 151/337 (44%), Gaps = 36/337 (10%)
Query: 72 HVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNIGAVKVLQELFPEPGRLQFIY 128
++LVTGGAG+IGS+ L+ ++Y++ D L+ GN+ VK +Q+ P F+
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQD---HPNYY-FVK 81
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
++ + + + E +++FAA ++V S +P+ +Y T+ +LE + ++
Sbjct: 82 GEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH 141
Query: 189 DTLIYSSTCATYGEPEKM-PITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRY 247
L+ ST YG K TEETP AP +PY +K A+ I L + K + V++ R
Sbjct: 142 IKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRC 201
Query: 248 FNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
N G P I +A G L + G DG VRD++
Sbjct: 202 SNNYG------------PYQYPEKLIPLXVTNALEG--KKLPLYG------DGLNVRDWL 241
Query: 308 DVNDLVDAHVKALERAQPK-KVG-IYNVGTGKGRSVKEFVEACKKATSANIKVI-YEPRR 364
V D H A++ K +VG +YN+G ++ E VE K I Y R
Sbjct: 242 HVTD----HCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDR 297
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
G + K + E +W KYT ++ L+ +W
Sbjct: 298 LGHDRRYAINAEKXKNEFDWEPKYT-FEQGLQETVQW 333
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 142/338 (42%), Gaps = 32/338 (9%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEP--GRLQFIYADL 131
L+TG AG+IGS+ LLK +V +DN + G+ + ++ L E +FI D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ N + D V+H AA+ V S DP+ L +L + V +
Sbjct: 91 RNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 148
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI 251
Y+++ +TYG+ +P E+T P++PY K + E FS+ + + LRYFNV
Sbjct: 149 TYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVF 208
Query: 252 G--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYID 308
G DP G + A ++G D Y DG RD+
Sbjct: 209 GRRQDPNG-------------------AYAAVIPKWTSSMIQGDDVYINGDGETSRDFCY 249
Query: 309 VNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSAN-----IKVIYEPR 363
+ + V A++ A + +YN+ G S+ + A + + N + +Y
Sbjct: 250 IENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDF 309
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
R GD +D +K L + KY ++ + +A W
Sbjct: 310 REGDVRHSLADISKAAKLLGYAPKY-DVSAGVALAMPW 346
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 136/325 (41%), Gaps = 42/325 (12%)
Query: 67 EEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK--VLQELFPEPGRL 124
E+ +L+TGGAG++GSH +L+ D + VT+VDN G V+ + E F
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENF------ 55
Query: 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA 184
+L + V + E D + H A+ A +P+K T TL +L
Sbjct: 56 -----ELINHDVVEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK 108
Query: 185 RHGVDTLIYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSD 239
R G L+ +ST YG+PE P +E+ P P Y + K++AE + + K
Sbjct: 109 RVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG 167
Query: 240 MAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD 299
+ V + R FN G PR + + +S A +G L V G+
Sbjct: 168 VEVRVARIFNTFG----------PRMHMNDGRVVSNFILQALQG--EPLTVYGS------ 209
Query: 300 GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVI 359
G+ R + V+DLV+ V + V N+G + ++ EF + K + ++
Sbjct: 210 GSQTRAFQYVSDLVNGLVALMNSNVSSPV---NLGNPEEHTILEFAQLIKNLVGSGSEIQ 266
Query: 360 YEPRRPGDYAEVYSDPTKIRLELNW 384
+ D + D K +L L W
Sbjct: 267 FLSEAQDDPQKRKPDIKKAKLMLGW 291
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIYAD 130
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L + R FI D
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 87
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + D V+H AA+ V S +DP+ + L +L + V +
Sbjct: 88 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
Y+++ +TYG+ +P EE P++PY K + E +++ + LRYFNV
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 205
Query: 251 IG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYI 307
G DP G + A +KG D Y DG RD+
Sbjct: 206 FGRRQDPNG-------------------AYAAVIPKWTAAMLKGDDVYINGDGETSRDFC 246
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE-----FVEACKKATSANIKVIYEP 362
+++++ ++ + K IYNV G ++ E + E + + Y
Sbjct: 247 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 306
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
R GD +D TK L + ++E L ++ W
Sbjct: 307 FRSGDVRHSQADVTKAIDLLKYRPN-IKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIYAD 130
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L + R FI D
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 81
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + D V+H AA+ V S +DP+ + L +L + V +
Sbjct: 82 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 139
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
Y+++ +TYG+ +P EE P++PY K + E +++ + LRYFNV
Sbjct: 140 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 199
Query: 251 IG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYI 307
G DP G + A +KG D Y DG RD+
Sbjct: 200 FGRRQDPNG-------------------AYAAVIPKWTAAMLKGDDVYINGDGETSRDFC 240
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE-----FVEACKKATSANIKVIYEP 362
+++++ ++ + K IYNV G ++ E + E + + Y
Sbjct: 241 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 300
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
R GD +D TK L + ++E L ++ W
Sbjct: 301 FRSGDVRHSQADVTKAIDLLKYRPN-IKIREGLRLSMPW 338
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIYAD 130
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L + R FI D
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 100
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + D V+H AA+ V S +DP+ + L +L + V +
Sbjct: 101 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 158
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
Y+++ +TYG+ +P EE P++PY K + E +++ + LRYFNV
Sbjct: 159 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 218
Query: 251 IG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYI 307
G DP G + A +KG D Y DG RD+
Sbjct: 219 FGRRQDPNG-------------------AYAAVIPKWTAAMLKGDDVYINGDGETSRDFC 259
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE-----FVEACKKATSANIKVIYEP 362
+++++ ++ + K IYNV G ++ E + E + + Y
Sbjct: 260 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 319
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
R GD +D TK L + ++E L ++ W
Sbjct: 320 FRSGDVRHSQADVTKAIDLLKYRPN-IKIREGLRLSMPW 357
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 151/345 (43%), Gaps = 46/345 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
+LVTGG G+IGS+ +L+ + V +D L G+ A L++L +P R F+ D
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN--LKDLEDDP-RYTFVKGD 62
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + V + + D V+H AA ++V S P + H+ T +LES+ R +
Sbjct: 63 VADYELVKELVRK--VDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEV 120
Query: 191 -LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFN 249
++ ST YG+ K TE P +PY K ++ ++L +++ ++ I R N
Sbjct: 121 RFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTN 180
Query: 250 VIG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYI 307
G PE + P+ +R A L +K Y T G VRD++
Sbjct: 181 NYGPYQFPEKLI---PKTIIR-----------------ASLGLKIPIYGT--GKNVRDWL 218
Query: 308 DVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVI-YEPRR 364
V D HV+A+E K IYN+ G+ ++ E V+ + ++I R
Sbjct: 219 YVED----HVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDR 274
Query: 365 PGDYAEVYSDPTKIRLELNWTAKYT-------NLQESLEIAWRWQ 402
PG D KI +L W KYT + L+ W W+
Sbjct: 275 PGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNEWWWK 319
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NIGAVKVLQELFPEPGRLQFIYAD 130
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L + R FI D
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 87
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ D + D V+H AA+ V S +DP+ + L +L + V +
Sbjct: 88 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 191 LIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
Y+++ +TYG+ +P EE P++PY K + E +++ + LRYFNV
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 205
Query: 251 IG--SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTD-YSTADGTCVRDYI 307
G DP G + A +KG D Y DG RD+
Sbjct: 206 FGRRQDPNG-------------------AYAAVIPKWTAAMLKGDDVYINGDGETSRDFC 246
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKE-----FVEACKKATSANIKVIYEP 362
+++++ ++ + K IYNV G ++ E + E + + Y
Sbjct: 247 YIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE 306
Query: 363 RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
R GD +D TK L + ++E L ++ W
Sbjct: 307 FRSGDVRASQADVTKAIDLLKYRPN-IKIREGLRLSMPW 344
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 154/328 (46%), Gaps = 44/328 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDN------LSRGNIGAVKVLQELFPEPGRL 124
+L+TGGAG++GS+ A ++ +V ++D S ++ + L G +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 125 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMA 184
I AD+ + + + + FD + H AAV+ ++T+ + + L +A
Sbjct: 73 --IAADINNPLDLRR-LEKLHFDYLFHQAAVS---DTTMLNQELVMKTNYQAFLNLLEIA 126
Query: 185 RHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
R +IY+S+ YG K P ++P N YG +K ++ +L S ++D +
Sbjct: 127 RSKKAKVIYASSAGVYGNT-KAPNVVGKNESPENVYGFSKLCMDEFVL--SHSNDNVQVG 183
Query: 245 LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
LRYFNV G PR +E + + A G +A +VK ++ G +R
Sbjct: 184 LRYFNVYG----------PREFYKE--KTASMVLQLALGAMAFKEVKLFEF----GEQLR 227
Query: 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR 364
D++ + D++ A+VKA+ + +K G+YNVG + RS E V K+ + KV Y +
Sbjct: 228 DFVYIEDVIQANVKAM---KAQKSGVYNVGYSQARSYNEIVSILKEHL-GDFKVTY-IKN 282
Query: 365 P----GDYAEVYSDPTKIRLELNWTAKY 388
P + + + +PT L+L++T Y
Sbjct: 283 PYAFFQKHTQAHIEPT--ILDLDYTPLY 308
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 129/319 (40%), Gaps = 42/319 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVK--VLQELFPEPGRLQFIYAD 130
+L+TGGAG++GSH +L D + VT+VDN G V+ + E F +
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENF-----------E 78
Query: 131 LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
L + V + E D + H A+ A +P+K T TL L R G
Sbjct: 79 LINHDVVEPLYIE--VDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGA-R 135
Query: 191 LIYSSTCATYGEPEKMPITEE-----TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
L+ +ST YG+PE P +E+ P P Y + K++AE + K + V +
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVA 195
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
R FN G PR + +S A +G L V G+ G+ R
Sbjct: 196 RIFNTFG----------PRXHXNDGRVVSNFILQALQG--EPLTVYGS------GSQTRA 237
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRP 365
+ V+DLV+ V V N+G + ++ EF + K + ++ +
Sbjct: 238 FQYVSDLVNGLVALXNSNVSSPV---NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 366 GDYAEVYSDPTKIRLELNW 384
D + D K +L L W
Sbjct: 295 DDPQKRKPDIKKAKLXLGW 313
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 146/350 (41%), Gaps = 47/350 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLS----RGNIGAVKVLQELFPEPG 122
+LVTGGAG+IGSH +LL +Y V ++D+L+ R N+ V +P
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA------DP- 55
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLES 182
RL+F++ D+ DA + + DA++HFAA ++V S + T +L+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 183 MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAV 242
GV +++ ST YG + TE +P P +PY +K ++ + + + + V
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302
I R N G +H F + L GT DG
Sbjct: 174 RITRCCNNYGP--------------YQHPEKLIPLF------VTNLLDGGTLPLYGDGAN 213
Query: 303 VRDYIDVNDLVDAHVK--ALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
VR+++ +D H + AL A + IY++G G + +E + A+ +
Sbjct: 214 VREWVHTDD----HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR 269
Query: 361 E-PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+ R G D KI EL + + + + L RW + +RG +
Sbjct: 270 KVADRKGHDLRYSLDGGKIERELGYRPQ-VSFADGLARTVRWYRENRGWW 318
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 146/350 (41%), Gaps = 47/350 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLS----RGNIGAVKVLQELFPEPG 122
+LVTGGAG+IGSH +LL +Y V ++D+L+ R N+ V +P
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA------DP- 55
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLES 182
RL+F++ D+ DA + + DA++HFAA ++V S + T +L+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 183 MARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAV 242
GV +++ ST YG + TE +P P +PY +K ++ + + + + V
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTC 302
I R N G +H F + L GT DG
Sbjct: 174 RITRCCNNYGP--------------YQHPEKLIPLF------VTNLLDGGTLPLYGDGAN 213
Query: 303 VRDYIDVNDLVDAHVK--ALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIY 360
VR+++ +D H + AL A + IY++G G + +E + A+ +
Sbjct: 214 VREWVHTDD----HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR 269
Query: 361 E-PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 409
+ R G D KI EL + + + + L RW + +RG +
Sbjct: 270 KVADRKGHDLRYSLDGGKIERELGYRPQ-VSFADGLARTVRWYRENRGWW 318
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 41/354 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G++GS+ A L + + DNLSR GA L L G +F++ D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK--GATDNLHWL-SSLGNFEFVHGDIR 60
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD-TL 191
+ V + ++ D+ H A + S +P + TL +LE++ ++ + +
Sbjct: 61 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 120
Query: 192 IYSSTCATYGEPEKMPITE---------------ETPQAPIN-PYGKAKKMAEDIILDFS 235
IYSST YG+ E+ E E+ Q + PYG +K A+ +LD++
Sbjct: 121 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 180
Query: 236 KNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAA---RGIIAGLKVKG 292
+ + ++ R+ ++ G GR + + G + C A GI + G
Sbjct: 181 RIFGLNTVVFRHSSMYG----GR-----QFATYDQGWVGWFCQKAVEIKNGINKPFTISG 231
Query: 293 TDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKAT 352
+G VRD + D++ + AL + +N+G S+
Sbjct: 232 ------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLED 285
Query: 353 SANIKVIYE--PRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKS 404
NI + + P R D +D KI ++W+ K + ++ ++ + W S
Sbjct: 286 YCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK-VSAKDGVQKMYDWTSS 338
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 149/348 (42%), Gaps = 36/348 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T+V+V GGAG++GS+ RLL+ +V +VDNL + A K+ P+ ++F
Sbjct: 33 TNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL----LSAEKI---NVPDHPAVRFSET 85
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG-V 188
+ D + ++ +D V H A S DPL + N T TL + E + +
Sbjct: 86 SITDDALLASL--QDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL 143
Query: 189 DTLIYSSTCATYGEP--EKMPITEETPQAPIN----PYGKAKKMAEDIILDFSKNSDMAV 242
++YS+ + E + TEET ++ PY +K E + + K +
Sbjct: 144 KKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPT 203
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGL---KVKGTDYSTAD 299
+ R+ NV G P LG GR G R + +KG +
Sbjct: 204 VRARFQNVYG--PGEILGA---------GRWRGTPATVWRNVTPTFIYKALKGMPLPLEN 252
Query: 300 -GTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKV 358
G RD+I V D+ + + P G+YN+ +GK S+ + + T N ++
Sbjct: 253 GGVATRDFIFVEDVANGLIACAADGTPG--GVYNIASGKETSIADLATKINEITGNNTEL 310
Query: 359 IYEPRRPGDYA-EVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
P+RP D + + + P K R EL ++A + + + L W K++
Sbjct: 311 DRLPKRPWDNSGKRFGSPEKARRELGFSADVS-IDDGLRKTIEWTKAN 357
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 146/349 (41%), Gaps = 54/349 (15%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
V +TG G IGSH A LL+ +V +DN + G +E + L F+ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGR-------REHLKDHPNLTFVEGSIA 76
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTL---VVLESMARHGVD 189
D VN+ + DAV+H AA S DP +Y++ +N + V+++ ++ V
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVG 130
Query: 190 TLIYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYF 248
+Y T YG +P + P+ + P+ P N K A + D+ + S + + R
Sbjct: 131 RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE---DYLEYSGLDFVTFRLA 187
Query: 249 NVIGSDPEGRLGEAPRPELREHGRISGACF-DAARGIIAGLKVKGTDYSTADGTCVRDYI 307
NV+G R P P + CF AR RD++
Sbjct: 188 NVVGP----RNVSGPLPIFFQRLSEGKKCFVTKAR---------------------RDFV 222
Query: 308 DVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRR--P 365
V DL A V+A++ G Y+ +G ++KE +A +A + E R P
Sbjct: 223 FVKDLARATVRAVDGVGH---GAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGP 279
Query: 366 GDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH--RGGYASI 412
D + DP++ + ++T L+E++ A + + + GGY +
Sbjct: 280 DDAPSILLDPSRTIQDFG-KIEFTPLKETVAAAVAYFREYGVSGGYTHL 327
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 147/345 (42%), Gaps = 44/345 (12%)
Query: 72 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
+++VTGGAG+IGS+ + + VT++D L+ G L+ + + R++ +
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA--GNKANLEAILGD--RVELVVG 61
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ DA+ V+K ++ DA++H+AA ++ S DP + H T +LE+ ++ +
Sbjct: 62 DIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI- 118
Query: 190 TLIYSSTCATYGE---PEKMP---------ITEETPQAPINPYGKAKKMAEDIILDFSKN 237
+ ST YG+ E +P T ET P +PY K ++ I+ + ++
Sbjct: 119 RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 178
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
+ I N G + I I+AG+K K
Sbjct: 179 FGVKATISNCSNNYGP----------------YQHIEKFIPRQITNILAGIKPK----LY 218
Query: 298 ADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVE-ACKKATSANI 356
+G VRD+I ND L + + + Y +G ++ KE +E +K
Sbjct: 219 GEGKNVRDWIHTNDHSTGVWAILTKGRMGET--YLIGADGEKNNKEVLELILEKMGQPKD 276
Query: 357 KVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+ R G D +K+R EL WT ++T+ E LE +W
Sbjct: 277 AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQW 321
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 141/342 (41%), Gaps = 57/342 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
+L+TGGAG+IGS ++K++ + +D L+ G ++ L ++ E R F +AD+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA--GNLESLSDI-SESNRYNFEHADI 59
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARH----G 187
D+ + + F + DAVMH AA ++V S P + T +LE ++ G
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 188 VDT-----LIYSSTCATYGE---PEK------MPI-TEETPQAPINPYGKAKKMAEDIIL 232
D + ST YG+ P++ +P+ TE T AP +PY +K ++ ++
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 233 DFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKG 292
+ + + ++ N G P I +A G L + G
Sbjct: 180 AWRRTYGLPTIVTNCSNNYG------------PYHFPEKLIPLVILNALEG--KPLPIYG 225
Query: 293 TDYSTADGTCVRDYIDVNDLVDAHVKALER--AQPKKVGIYNVGTGKGRSVKEFV----- 345
G +RD++ V D H +AL + K YN+G + + V
Sbjct: 226 K------GDQIRDWLYVED----HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICD 275
Query: 346 ---EACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNW 384
E KATS ++ Y RPG D KI EL W
Sbjct: 276 LLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGW 317
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 149/348 (42%), Gaps = 60/348 (17%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNIGAVKVLQELFPEP-----GRLQFI 127
L+TG G GS+ A LL+ Y V IV S N G + + L+ P G ++
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRI---EHLYKNPQAHIEGNMKLH 84
Query: 128 YADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLESMARH 186
Y DL D+ + K +E + + A ++V + + D +Y ++ TL +L+++
Sbjct: 85 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHV-KISFDLAEYTADVDGVGTLRLLDAVKTC 143
Query: 187 GVDTLI---YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
G+ + +ST YG+ +++P E TP P +PYG AK A I+++F + ++ +
Sbjct: 144 GLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAV 203
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACF---DAARGIIAGLKVKGTDYSTADG 300
FN E+PR GA F +R + + +S +
Sbjct: 204 NGILFN----------HESPR---------RGANFVTRKISRSVAKIYLGQLECFSLGNL 244
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEA------------- 347
RD+ D V+A L+ +P+ + + TG+ SV+EFVE
Sbjct: 245 DAKRDWGHAKDYVEAMWLMLQNDEPED---FVIATGEVHSVREFVEKSFLHIGKTIVWEG 301
Query: 348 --------CKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAK 387
CK+ ++ V + RP + + D TK + +LNW +
Sbjct: 302 KNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPR 349
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 143/334 (42%), Gaps = 40/334 (11%)
Query: 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128
G L+TG AG++G + A L + + V SR N + P ++ I
Sbjct: 11 GSMRALITGVAGFVGKYLANHLTEQNVEVF---GTSRNN-------EAKLPN---VEMIS 57
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D++ V K S+ D + H AA + V +S L+ + TL VL+++ +
Sbjct: 58 LDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL 117
Query: 189 DTLIYS-STCATYGE--PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
D I + + YG PE+ P++EE P++PYG +K + + K M ++
Sbjct: 118 DCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHT 177
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLKVKGTDYSTADGTCVR 304
R FN IG P LG + D A+ I+ ++ + + VR
Sbjct: 178 RTFNHIG--PGQSLGFVTQ--------------DFAKQIVDIEMEKQEPIIKVGNLEAVR 221
Query: 305 DYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGRSVKEFVEACKKATSANIKVIYEP- 362
D+ DV D+V A+ +Q K G +YNV +G G +++ ++ + I P
Sbjct: 222 DFTDVRDIVQAYWLL---SQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPL 278
Query: 363 -RRPGDYAEVYSDPTKIRLELNWTAKYTNLQESL 395
RP + + +++ W + L++SL
Sbjct: 279 QLRPSEVPTLIGSNKRLKDSTGWKPRIP-LEKSL 311
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 148/358 (41%), Gaps = 67/358 (18%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG----RLQFIYA 129
L+TG G GS+ A LL+ Y V + R + + + ++ +P + Y
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKR--RASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITS-NTLVVLESMARHGV 188
DL D + + E D V + A+++V S P +Y ++ + TL +LE++ G+
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP-EYTADVDAMGTLRLLEAIRFLGL 121
Query: 189 D--TLIY-SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
+ T Y +ST YG +++P E TP P +PY AK A I +++ ++ M
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNG 181
Query: 246 RYFNVIGSDPEGRLGEAPRP-ELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVR 304
FN E+PR E +I+ A + A+G+ + L + D +R
Sbjct: 182 ILFN----------HESPRRGETFVTRKITRAIANIAQGLESCLYLGNMD-------SLR 224
Query: 305 DYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYE--- 361
D+ D V L++ QP+ + + TG SV++FVE A IK+ +E
Sbjct: 225 DWGHAKDYVKMQWMMLQQEQPED---FVIATGVQYSVRQFVEMA--AAQLGIKLRFEGTG 279
Query: 362 ----------------------------PR--RPGDYAEVYSDPTKIRLELNWTAKYT 389
PR RP + + DPTK +L W + T
Sbjct: 280 VEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEIT 337
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 146/346 (42%), Gaps = 45/346 (13%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
L+TG G G++ A LL+ Y V D S G + + L+EL E ++ I+ DL +
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRS-GEFASWR-LKELGIE-NDVKIIHMDLLE 63
Query: 134 AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193
+ + + D V + AA ++VG S P+ L +LE++ DT Y
Sbjct: 64 FSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFY 123
Query: 194 -SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
+ST +G+ +++P TE+TP P +PY AK I +++ + +M FN
Sbjct: 124 QASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFN--- 180
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
E+P LR ++ + I GL+ K + RD+ +
Sbjct: 181 -------HESP---LRGIEFVTRKITYSLARIKYGLQDK---LVLGNLNAKRDWGYAPEY 227
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANI---------------- 356
V+A +++ +P Y + TG+ +V+EFVE K +I
Sbjct: 228 VEAMWLMMQQPEPDD---YVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNT 284
Query: 357 -KVIYEPR----RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEI 397
KVI E RP + + +P K +L W + T E +EI
Sbjct: 285 GKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPR-TTFDELVEI 329
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 49/292 (16%)
Query: 73 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLS-RGNIGAVKVLQELFP--EPGRLQFIY 128
+L+TGGAG+IGS ++ + S V +VD L+ GN L L P + R F
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN------LMSLAPVAQSERFAFEK 57
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGV 188
D+ D + + F+E+ D VMH AA ++V S P + T +LE+ AR
Sbjct: 58 VDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEA-ARAYW 116
Query: 189 DTLI----------YSSTCATYGEPEKMP--ITEETPQAPINPYGKAKKMAEDIILDFSK 236
+ L + ST YG+ TE TP AP +PY +K ++ ++ + +
Sbjct: 117 NALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLR 176
Query: 237 NSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYS 296
+ +I N G P I +A G L V G
Sbjct: 177 TYGLPTLITNCSNNYG------------PYHFPEKLIPLMILNALAG--KSLPVYG---- 218
Query: 297 TADGTCVRDYIDVNDLVDAHVKALE-RAQPKKVG-IYNVGTGKGRSVKEFVE 346
+G +RD++ V D H +AL A KVG YN+G R + VE
Sbjct: 219 --NGQQIRDWLYVED----HARALYCVATTGKVGETYNIGGHNERKNLDVVE 264
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 41/283 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRG----NIGAVKVLQELFPEPGRLQF 126
++VTGGAG+IGS+ ++ L D + +VDNL G N+ + + + E +Q
Sbjct: 2 IIVTGGAGFIGSNI-VKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 60
Query: 127 IYAD-LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR 185
+ + GD +A+ F E A + + G+ +D +N + ++ + R
Sbjct: 61 MAGEEFGDVEAI---FHEGAXSSTTEWD-----GKYMMD-----NNYQYSKELLHYCLER 107
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
+Y+S+ ATYG I + P+N YG +K + ++ + ++ ++
Sbjct: 108 E--IPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGF 165
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
RYFNV G P G ++ F + G K + S RD
Sbjct: 166 RYFNVYG------------PREGHKGSMASVAFHLNTQLNNGESPKLFEGSE---NFKRD 210
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC 348
++ V D+ D ++ LE GI+N+GTG+ S + +A
Sbjct: 211 FVYVGDVADVNLWFLENGVS---GIFNLGTGRAESFQAVADAT 250
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 122/283 (43%), Gaps = 41/283 (14%)
Query: 73 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRG----NIGAVKVLQELFPEPGRLQF 126
++VTGGAG+IGS+ ++ L D + +VDNL G N+ + + + E +Q
Sbjct: 49 IIVTGGAGFIGSNI-VKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 107
Query: 127 IYAD-LGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR 185
+ + GD +A+ F E A + + G+ +D +N + ++ + R
Sbjct: 108 MAGEEFGDVEAI---FHEGACSSTTE-----WDGKYMMD-----NNYQYSKELLHYCLER 154
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMIL 245
+Y+S+ ATYG I + P+N +G +K + ++ + ++ ++
Sbjct: 155 E--IPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGF 212
Query: 246 RYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRD 305
RYFNV G P G ++ F + G K + S RD
Sbjct: 213 RYFNVYG------------PREGHKGSMASVAFHLNTQLNNGESPKLFEGSE---NFKRD 257
Query: 306 YIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEAC 348
++ V D+ D ++ LE GI+N+GTG+ S + +A
Sbjct: 258 FVYVGDVADVNLWFLENGVS---GIFNLGTGRAESFQAVADAT 297
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 29/185 (15%)
Query: 69 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIY 128
G +LVTG AG +G A + L+ R +L G +V+
Sbjct: 18 GSHMILVTGSAGRVG-RAVVAALRTQGRTVRGFDLRPSGTGGEEVV-------------- 62
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYVGE----STLDPLKYYHNITSNTLVVLESMA 184
L D +A++ DA+M +AV ++G + D + + T +L++ +
Sbjct: 63 GSLEDGQALS--------DAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAAS 114
Query: 185 RHGVDTLIYSSTCATYGE--PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAV 242
GV +++S+ Y E PE +P+TE+ P P +PYG K + E+++ ++ M
Sbjct: 115 AAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMET 174
Query: 243 MILRY 247
+ILR+
Sbjct: 175 VILRF 179
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 184 TLFRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGK 230
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 231 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 277
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 184 TLFRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGK 230
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 231 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 277
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 124 RIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 184 TLFRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGK 230
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 231 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 277
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 184 TLFRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGK 230
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 231 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 277
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 184 TLFRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGK 230
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 231 QKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 277
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG +G IG+ L + + N+ A ++Q + G ++FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYL---------AEKYGKKNVIASDIVQR---DTGGIKFITLDVS 49
Query: 133 DAKAVNKFFSENAFDAVMHFAAV-AYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ +++ + + DA+ H A + + GE DP Y + T +LE+ +H V+ +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAKGEK--DPALAYKVNMNGTYNILEAAKQHRVEKV 107
Query: 192 IYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+ ST +G E K + T P YG K AE + + + + V LRY +
Sbjct: 108 VIPSTIGVFGPETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 251 IGSDPEGRLG 260
I E G
Sbjct: 168 ISYKAEPTAG 177
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 117/288 (40%), Gaps = 36/288 (12%)
Query: 71 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
T VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+
Sbjct: 316 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 367
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
D+ ++ + D V+ A+A E T +PL+ + L ++ ++
Sbjct: 368 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 425
Query: 190 TLIYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAV 242
+I+ ST YG E+ + P Y +K++ + +I + + +
Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 485
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRI--SGACFDAARGIIAGLKVKGTDYSTADG 300
+ R FN +G PR + RI S A ++ G +K D G
Sbjct: 486 TLFRPFNWMG----------PRLDNLNAARIGSSRAITQLILNLVEGSPIKLID----GG 531
Query: 301 TCVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 532 KQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 579
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 27/180 (15%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNIGAVKVLQELFPE--PG 122
H+ + G AG +G RL+KD + T++D V Q P G
Sbjct: 16 HIAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLID-----------VFQPEAPAGFSG 64
Query: 123 RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLES 182
+ ADL K E D + H AA+ GE+ LD K Y T + ++
Sbjct: 65 AVDARAADLSAPGEAEKLV-EARPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDA 122
Query: 183 M-ARHGVD----TLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN 237
+ +G D ++++S+ A +G P PI +E P+ YG K + E ++ D+S+
Sbjct: 123 IRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRR 182
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 34/285 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+ G G+IG+H RLL+ D Y V +D IG+ + + F F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEGDI 54
Query: 132 GDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
++ + D V+ A+A E T +PL+ + L ++ ++ +
Sbjct: 55 SIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRI 112
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINP-------YGKAKKMAEDIILDFSKNSDMAVMI 244
I+ ST YG E+ + P Y +K++ + +I + + + +
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 245 LRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GTCV 303
R FN +G PR + RI + A +I L V+G+ D G
Sbjct: 173 FRPFNWMG----------PRLDNLNAARIGSS--RAITQLILNL-VEGSPIKLIDGGKQK 219
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEFVE 346
R + D+ D ++A + +E A + G I N+G + S++E E
Sbjct: 220 RCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGE 264
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG +G IG+ L + + N+ A ++Q + G ++FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYL---------AEKYGKKNVIASDIVQR---DTGGIKFITLDVS 49
Query: 133 DAKAVNKFFSENAFDAVMHFAAV-AYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTL 191
+ +++ + + DA+ H A + + GE DP Y + T +LE+ +H V+ +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAKGEK--DPALAYKVNMNGTYNILEAAKQHRVEKV 107
Query: 192 IYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNV 250
+ ST +G E K + T P +G K AE + + + + V LRY +
Sbjct: 108 VIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 251 IGSDPEGRLG 260
I E G
Sbjct: 168 ISYKAEPTAG 177
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
LVTG G G++ A LL+ YRV + ++R + L+EL E G +Q+ D+ D
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGL--VARRSSDTRWRLRELGIE-GDIQYEDGDMAD 74
Query: 134 AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIY 193
A +V + + V + AA ++VG S P+ +LE++ + +T Y
Sbjct: 75 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 134
Query: 194 -SSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN 237
+ST +G + E TP P +PYG AK I +++ ++
Sbjct: 135 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRES 179
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 119/293 (40%), Gaps = 42/293 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQA---PIN-PYGKAK----KMAEDIILDFSKN 237
V+ L++ + Y + K P+ E E Q P N PY AK K+ E + ++
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRD 157
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
Y +V+ ++ G P H S R K D
Sbjct: 158 ---------YRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVV 201
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEAC 348
GT +R+++ V+D+ A + +E A QP I NVGTG +++E +
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTI 260
Query: 349 KKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
K +V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG---------- 122
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 123 ----RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLD---PLKYYHNITSN 175
++ D+ D + + + F D+V+HF S +D + HN
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 176 TLVVLESMARHGVDT-LIYSSTCATYGEP 203
TL VL ++ G + L+ T YG P
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTP 152
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-------- 122
+ V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 123 ------RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLD---PLKYYHNIT 173
++ D+ D + + + F D+V+HF S +D + HN
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 131
Query: 174 SNTLVVLESMARHGVDT-LIYSSTCATYGEP 203
TL VL ++ G + L+ T YG P
Sbjct: 132 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTP 162
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+L+TGG G G +R + D+ + SR + ++ E F +P R++F D+
Sbjct: 24 ILITGGTGSFGK-CFVRKVLDTTNAKKIIVYSRDELKQSEMAME-FNDP-RMRFFIGDVR 80
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
D + +N ++ D +H AA+ +V + +PL+ I +N + G +I
Sbjct: 81 DLERLN--YALEGVDICIHAAALKHVPIAEYNPLEC---IKTNIM---------GASNVI 126
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL---DFSKNSDMAVMILRYFN 249
+ C + + ++ + PIN YG K ++ + + +F +S ++RY N
Sbjct: 127 --NACLKNAISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGN 184
Query: 250 VIGS 253
V+GS
Sbjct: 185 VVGS 188
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 42/293 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQA---PIN-PYGKAK----KMAEDIILDFSKN 237
V+ L++ + Y + K P+ E E Q P N PY AK K+ E + ++
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRD 157
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
Y +V+ ++ G P H S R D
Sbjct: 158 ---------YRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVV 201
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEAC 348
GT +R+++ V+D+ A + +E A QP I NVGTG +++E +
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTI 260
Query: 349 KKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
K +V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 30/287 (10%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQAPINPYGKAKKMAE--DIILDFSKNSDMAVM 243
V+ L++ + Y + K P+ E E Q + P + + +A+ I L S N
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAIAKIAGIKLCESYNRQYG-- 155
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST-ADGTC 302
Y +V+ ++ G P H S R D GT
Sbjct: 156 -RDYRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTP 207
Query: 303 VRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEACKKATSA 354
+R+++ V+D+ A + +E A QP I NVGTG +++E + K
Sbjct: 208 MREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTIAKVVGY 266
Query: 355 NIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
+V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 267 KGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/342 (19%), Positives = 134/342 (39%), Gaps = 41/342 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D ++ +++F + +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 133 DAKAVNKFFS--ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ K ++ F+ + ++ +S + Y N T + ++E+ +G+
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 191 LIYSSTCATYGEPEKMPIT-------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
Y+S+ Y E +++ T + P P + YG K E++ ++K+ +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREAAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
R + +++ V+ ++ + + V N+G+ + S+ E E + + + P
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPV---NIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG 301
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
G SD I+ +L W A L+E L I + W K
Sbjct: 302 PEGVRGR-NSDNNLIKEKLGW-APNMRLKEGLRITYFWIKEQ 341
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/342 (19%), Positives = 134/342 (39%), Gaps = 41/342 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D ++ +++F + +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 133 DAKAVNKFFS--ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ K ++ F+ + ++ +S + Y N T + ++E+ +G+
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 191 LIYSSTCATYGEPEKMPIT-------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
Y+S+ Y E +++ T + P P + YG K E++ ++K+ +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
R + +++ V+ ++ + + V N+G+ + S+ E E + + + P
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPV---NIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG 301
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
G SD I+ +L W A L+E L I + W K
Sbjct: 302 PEGVRGR-NSDNNLIKEKLGW-APNMRLKEGLRITYFWIKEQ 341
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 42/293 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQA---PIN-PYGKAK----KMAEDIILDFSKN 237
V+ L++ Y + K P+ E E Q P N PY AK K+ E + ++
Sbjct: 98 DVNKLLFLGASCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRD 157
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
Y +V+ ++ G P H S R D
Sbjct: 158 ---------YRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVV 201
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEAC 348
GT +R+++ V+D+ A + +E A QP I NVGTG +++E +
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTI 260
Query: 349 KKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
K +V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 71 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPG-------- 122
+ V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 123 ------RLQFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLD---PLKYYHNIT 173
++ D+ D + + + F D+V+HF S +D + HN
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 131
Query: 174 SNTLVVLESMARHGVDT-LIYSSTCATYGEP 203
TL VL ++ G + L+ YG P
Sbjct: 132 IGTLNVLFAIKEFGEECHLVKLGAMGEYGTP 162
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 42/293 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQA---PIN-PYGKAK----KMAEDIILDFSKN 237
V+ L++ + Y + K P+ E E Q P N PY A+ K+ E + ++
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYNRQYGRD 157
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
Y +V+ ++ G P H S R D
Sbjct: 158 ---------YRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVV 201
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEAC 348
GT +R+++ V+D+ A + +E A QP I NVGTG +++E +
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRELAQTI 260
Query: 349 KKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
K +V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 39/285 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+ G G+IG H + R+L+ + ++ +G + V E R+ F D+
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL-VKHE------RMHFFEGDI- 78
Query: 133 DAKAVNKFFSE---NAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVD 189
+NK + E D ++ A+A PL+ + L ++ S ++G
Sbjct: 79 ---TINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K 134
Query: 190 TLIYSSTCATYG-------EPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAV 242
L++ ST YG +P+ +T P Y +K++ + +I + +
Sbjct: 135 HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEG-LNF 193
Query: 243 MILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTAD-GT 301
+ R FN IG L P+ G+ + G V+G + S D G+
Sbjct: 194 TLFRPFNWIGPG----LDSIYTPK-------EGSSRVVTQ--FLGHIVRGENISLVDGGS 240
Query: 302 CVRDYIDVNDLVDAHVKALERAQPKKVG-IYNVGTGKGR-SVKEF 344
R + V+D + A +K +E + G IYN+G SV+E
Sbjct: 241 QKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVREL 285
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 134/342 (39%), Gaps = 41/342 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D ++ +++F + +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 133 DAKAVNKFFS--ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ K ++ F+ + ++ +S + Y N T + ++E+ +G+
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 191 LIYSSTCATYGEPEKMPIT-------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
Y+S+ Y E +++ T + P P + YG + E++ ++K+ +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECR 199
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
R + +++ V+ ++ + + V N+G+ + S+ E E + + + P
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPV---NIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG 301
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
G SD I+ +L W A L+E L I + W K
Sbjct: 302 PEGVRGR-NSDNNLIKEKLGW-APNMRLKEGLRITYFWIKEQ 341
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/318 (18%), Positives = 124/318 (38%), Gaps = 42/318 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ VTGG G++G + + +K+ I+ S GN K + + ++ +D
Sbjct: 5 IAVTGGTGFLGQYV-VESIKNDGNTPIILTRSIGN----KAINDY-------EYRVSDYT 52
Query: 133 DAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLI 192
+N+ N DAV+H AA + + +H+ T + ++ + + ++
Sbjct: 53 LEDLINQL---NDVDAVVHLAAT----RGSQGKISEFHDNEILTQNLYDACYENNISNIV 105
Query: 193 YSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIG 252
Y+ST + Y + +P E+ P YG +K E I +S+ + + LR+ ++ G
Sbjct: 106 YASTISAYSDETSLPWNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG 165
Query: 253 SDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDL 312
+ + R F + + A+ R+++ D
Sbjct: 166 FNEKNNY---------XINRFFRQAFHGEQLTLH-----------ANSVAKREFLYAKDA 205
Query: 313 VDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKA-TSANIKVIYEPRRPGDYAEV 371
+ + AL+ Q K G +N+G+G + E A + + ++ P
Sbjct: 206 AKSVIYALK--QEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSS 263
Query: 372 YSDPTKIRLELNWTAKYT 389
Y D +K + L+++ Y
Sbjct: 264 YXDSSKAKELLDFSTDYN 281
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 42/293 (14%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV---VLESMARH 186
+L D++AV+ FF+ D V + A A VG + I N ++ ++ + ++
Sbjct: 40 NLLDSRAVHDFFASERIDQV--YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 187 GVDTLIYSSTCATYGEPEKMPITE-ETPQA---PIN-PYGKAK----KMAEDIILDFSKN 237
V+ L++ + Y + K P+ E E Q P N PY AK K+ E + ++
Sbjct: 98 DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRD 157
Query: 238 SDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYST 297
Y +V+ ++ G P H S R D
Sbjct: 158 ---------YRSVMPTNLYG-------PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVV 201
Query: 298 -ADGTCVRDYIDVNDLVDAHVKALERA--------QPKKVGIYNVGTGKGRSVKEFVEAC 348
GT +R+++ V+D+ A + +E A QP I NVGTG ++++ +
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHI-NVGTGVDCTIRDLAQTI 260
Query: 349 KKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRW 401
K +V+++ +P D T++ +L W + + L+ L ++W
Sbjct: 261 AKVVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEIS-LEAGLASTYQW 311
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 134/342 (39%), Gaps = 41/342 (11%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+ +TG G+I SH A RL + + V D ++ +++F + +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 133 DAKAVNKFFS--ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDT 190
+ K ++ F+ + ++ +S + Y N T + ++E+ +G+
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 191 LIYSSTCATYGEPEKMPIT-------EETPQAPINPYGKAKKMAEDIILDFSKNSDMAVM 243
Y+S+ Y E +++ T + P P + +G K E++ ++K+ +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 199
Query: 244 ILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCV 303
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 304 RDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPR 363
R + +++ V+ ++ + + V N+G+ + S+ E E + + + P
Sbjct: 245 RSFTFIDECVEGVLRLTKSDFREPV---NIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG 301
Query: 364 RPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSH 405
G SD I+ +L W A L+E L I + W K
Sbjct: 302 PEGVRGR-NSDNNLIKEKLGW-APNMRLKEGLRITYFWIKEQ 341
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYA 129
+ +LVTG AG +GS L ++ V + D + ++GA + +E+ +
Sbjct: 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIV---DLGAAEAHEEI---------VAC 49
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLV----VLESMAR 185
DL DA+AV+ + D ++H V+ + +++I ++ + E+
Sbjct: 50 DLADAQAVHDLVKD--CDGIIHLGGVSVE--------RPWNDILQANIIGAYNLYEAARN 99
Query: 186 HGVDTLIYSSTCATYGE-PEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMI 244
G ++++S+ T G P I E P+ P + YG +K ED+ + D+ +
Sbjct: 100 LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLN 159
Query: 245 LRYFNVIGSDPEGRL 259
+R + + R+
Sbjct: 160 IRIGSCFPKPKDARM 174
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 31/169 (18%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
V VTG +G+IGS +RLL+ Y R T+ D N+ VK L +L L AD
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDP---TNVKKVKHLLDLPKAETHLTLWKAD 64
Query: 131 LGDAKAVNKFFSENAFD-AVMHFAAVAYVGESTLDPLKYYHNITSNTLV--VLESM---- 183
L D E +FD A+ V +V P+ + N ++ +E M
Sbjct: 65 LAD---------EGSFDEAIKGCTGVFHVAT----PMDFESKDPENEVIKPTIEGMLGIM 111
Query: 184 ----ARHGVDTLIYSSTCATYG-EPEKMPITEETPQAPINPYGKAKKMA 227
A V L+++S+ T + ++P+ +E+ + + + +AKKM
Sbjct: 112 KSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME-FCRAKKMT 159
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPE-PGRLQFIY 128
V H L+T G +G +LL Y VT+ + A++ ++E + + RLQF+
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVT---YHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 129 ADLGDAKAVNKFFSENAFDAVMHFAAVAYV 158
AD+ + ++K E A+ HF + ++
Sbjct: 64 ADVTKKEDLHKIVEE----AMSHFGKIDFL 89
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNI------GAVKVLQELFPEPGRLQF 126
+L+TG + +G H ALRLL+ +RV I ++ GAV + + E G F
Sbjct: 30 ILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIXAF 89
Query: 127 I 127
I
Sbjct: 90 I 90
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQ-FIYADL 131
V VTG G+ GS +L L T + + +G + LF E RL + + +
Sbjct: 12 VFVTGHTGFKGSWLSLWL-------TEMGAIVKGYALDAPTVPSLF-EIVRLNDLMESHI 63
Query: 132 GDAKAVNKFFS---ENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG- 187
GD + K S E + V H AA V S P+K Y T+ +LE++ + G
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 188 VDTLIYSSTCATYGEPEKMP-ITEETPQAPINPYGKAKKMAE 228
+ ++ ++ Y E + E P +PY +K AE
Sbjct: 124 IKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAE 165
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 65 QHEEGVTHVLVTGGAGYIGSHAALRLLKDSYRV--TIVDNLSRGNIGAVKVLQELFPEPG 122
QH G V GG G++ S LL+ Y V T+ D ++ + + LQEL G
Sbjct: 4 QHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQEL----G 59
Query: 123 RLQFIYADLGD 133
L+ ADL D
Sbjct: 60 DLKIFRADLTD 70
>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1EQU|B Chain B, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1DHT|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dihydrotestosterone
pdb|3DHE|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dehydroepiandrosterone
pdb|1I5R|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Em1745 Complex
pdb|1JTV|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
Type 1 Complexed With Testosterone
pdb|1QYV|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Complex With Nadp
pdb|1QYW|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Comlex With
Androstanedione And Nadp
pdb|1QYX|A Chain A, Crystal Structure Of Human Estrogenic
17beta-Hydroxysteroid Dehydrogenase Complex With
Androstenedione And Nadp
pdb|1BHS|A Chain A, Human Estrogenic 17beta-hydroxysteroid Dehydrogenase
pdb|3DEY|X Chain X, Crystal Structure Of 17beta-Hsd1 With Dht In Normal And
Reverse Orientation.
pdb|3HB4|X Chain X, 17beta-Hydroxysteroid Dehydrogenase Type1 Complexed With
E2b
pdb|3HB5|X Chain X, Binary And Ternary Crystal Structures Of A Novel Inhibitor
Of 17 Beta-Hsd Type 1: A Lead Compound For Breast Cancer
Therapy
pdb|3KLP|X Chain X, 17beta-Hsd1 In Complex With A-Diol
pdb|3KM0|A Chain A, 17betahsd1 In Complex With 3beta-Diol
pdb|3KM0|B Chain B, 17betahsd1 In Complex With 3beta-Diol
Length = 327
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221q Complexed With Estradiol
Length = 327
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed
17-beta- Estradiol
Length = 327
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
Length = 327
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With 17- Beta-Estradiol
pdb|1FDT|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With Estradiol And Nadp+
pdb|3KLM|X Chain X, 17beta-Hsd1 In Complex With Dht
Length = 327
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
C-Terminal Deletion Mutant Complexed With Estradiol And
Nadp+
Length = 289
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNIGAVKVLQELFPEPGRLQ 125
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 126 FIYADLGDAKAV---NKFFSENAFDAVMHFAAVAYVG 159
+ D+ D+K+V + +E D ++ A + +G
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLG 97
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
LVTG + +G AA+RL ++ Y + I N +R A++ +E+ ++ + A++G
Sbjct: 8 LVTGSSRGVGKAAAIRLAENGYNIVI--NYARSKKAALETAEEIEKLGVKVLVVKANVGQ 65
Query: 134 AKAVNKFFSE 143
+ + F +
Sbjct: 66 PAKIKEMFQQ 75
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
LVTG A IG A LL +V +VD NL G + L E F EP + FI D+
Sbjct: 11 LVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAG-VQCKAALHEQF-EPQKTLFIQCDVA 68
Query: 133 DAKAVNKFFSENAFDAVMHF 152
D + + F + V HF
Sbjct: 69 DQQQLRDTFRK----VVDHF 84
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG G++ SH +LL+ Y+V RG + L L R Y
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV-------RGTARSASKLANL---QKRWDAKYPGRF 63
Query: 133 DAKAVNKFFSENAFDAVMHFAA-VAYVG 159
+ V + A+D V+ AA VA++
Sbjct: 64 ETAVVEDMLKQGAYDEVIKGAAGVAHIA 91
>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase
pdb|1IY8|B Chain B, Crystal Structure Of Levodione Reductase
pdb|1IY8|C Chain C, Crystal Structure Of Levodione Reductase
pdb|1IY8|D Chain D, Crystal Structure Of Levodione Reductase
pdb|1IY8|E Chain E, Crystal Structure Of Levodione Reductase
pdb|1IY8|F Chain F, Crystal Structure Of Levodione Reductase
pdb|1IY8|G Chain G, Crystal Structure Of Levodione Reductase
pdb|1IY8|H Chain H, Crystal Structure Of Levodione Reductase
Length = 267
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VL+TGG +G A+RL + ++++VD S G + + E P+ L + AD+
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV-ADVS 74
Query: 133 DAKAVNKFFS 142
D V + +
Sbjct: 75 DEAQVEAYVT 84
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
LVTG IG ALRL+KD + V I D + A V E+ G + D+ D
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIAD---YNDATAKAVASEINQAGGHAVAVKVDVSD 62
Query: 134 AKAVNKFFSE-----NAFDAVMHFAAVA 156
V + FD +++ A VA
Sbjct: 63 RDQVFAAVEQARKTLGGFDVIVNNAGVA 90
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
+VTG + IG+ A RL D + T+V N + A +V ++ G+ AD+ D
Sbjct: 31 IVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD 88
Query: 134 AKAVNKFF--SENAFDAV 149
AV + F +E AF V
Sbjct: 89 PAAVRRLFATAEEAFGGV 106
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
VLVTG G++ SH +LL+ Y+V RG + L L R Y
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV-------RGTARSASKLANL---QKRWDAKYPGRF 63
Query: 133 DAKAVNKFFSENAFDAVMHFAA-VAYVG 159
+ V + A+D V+ AA VA++
Sbjct: 64 ETAVVEDXLKQGAYDEVIKGAAGVAHIA 91
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 72 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
V VTGG G++GS LL++ Y V V L L +L F ADL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 132 GD 133
+
Sbjct: 63 SN 64
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 73 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADL 131
VL+TGG G IG A RL + + R+ + GA ++ +EL + D+
Sbjct: 262 VLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDV 321
Query: 132 GDAKAVNKFFSENAFDAVMHFAAV 155
+ A+ + +AV H A +
Sbjct: 322 AERDALAALVTAYPPNAVFHTAGI 345
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 73 VLVTGGAGYIGSHAALRLL--KDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYAD 130
VLVTGG G +G+ A L+ + + +V GA +++ +L + D
Sbjct: 533 VLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACD 592
Query: 131 LGDAKAVNKFFS----ENAFDAVMHFAAV 155
+ D + + K + E+ AV+H A V
Sbjct: 593 VADRETLAKVLASIPDEHPLTAVVHAAGV 621
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 130 DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVV----LESMAR 185
D+ + AVNKFF+E + V++ AA + +D + +++ + L + A
Sbjct: 48 DITNVLAVNKFFNEKKPNVVINCAA-----HTAVDKCEEQYDLAYKINAIGPKNLAAAAY 102
Query: 186 HGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDII 231
++ ST + K PITE P + YGK K E+ +
Sbjct: 103 SVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFV 148
>pdb|3E5D|A Chain A, Crystal Structure Of A Putative Glyoxalase I
(Lmof2365_0426) From Listeria Monocytogenes Str. 4b
F2365 At 2.70 A Resolution
Length = 127
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 333 VGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGD--YAEVYSDPTKIRLELNW 384
+ TG +V E E ++ A + EPR GD Y V DP R+E+ W
Sbjct: 77 ISTGTKEAVDELTEKLRQDGFA---IAGEPRXTGDGYYESVVLDPEGNRIEITW 127
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 74 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGD 133
L+TG +G +G + RLL + + V V N S G K+ DL D
Sbjct: 4 LITGASGQLGIELS-RLLSERHEVIKVYNSSEIQ-GGYKL----------------DLTD 45
Query: 134 AKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHG--VDTL 191
+ F + D +++ AA+ V + ++ K Y I + + + R G +D+
Sbjct: 46 FPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAY-KINAEAV---RHIVRAGKVIDSY 101
Query: 192 IYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIIL 232
I + + EK EE PIN YG +K + E L
Sbjct: 102 IVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFAL 142
>pdb|1UQR|A Chain A, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|B Chain B, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|C Chain C, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|D Chain D, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|E Chain E, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|F Chain F, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|G Chain G, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|H Chain H, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|I Chain I, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|J Chain J, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|K Chain K, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
pdb|1UQR|L Chain L, Type Ii 3-dehydroquinate Dehydratase (dhqase) From
Actinobacillus Pleuropneumoniae
Length = 154
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 264 RPELREHGRISGACFDAARGIIAGLKVKGTDYS 296
R R H +S D A+G+I GL KG DY+
Sbjct: 107 REPFRHHSYLS----DVAKGVICGLGAKGYDYA 135
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 70 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 105
V +V+V G +GYIG AA K +VT++D L R
Sbjct: 149 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|2A4K|A Chain A, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
pdb|2A4K|B Chain B, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
Length = 263
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 73 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 132
+LVTG A IG A ++ + VD R AV L+ + AD+
Sbjct: 9 ILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEA------EAIAVVADVS 62
Query: 133 DAKAVNKFFSE-----NAFDAVMHFAAVAYVGESTLDPLKYYH-----NITSNTLV 178
D KAV F+E V HFA VA+ S PL+ + N+T + LV
Sbjct: 63 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,353,524
Number of Sequences: 62578
Number of extensions: 507978
Number of successful extensions: 1528
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 127
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)