Query 015081
Match_columns 413
No_of_seqs 252 out of 1063
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02365 NAM: No apical merist 100.0 1.4E-36 3E-41 265.5 6.8 126 49-193 1-129 (129)
2 KOG1883 Cofactor required for 93.9 0.067 1.4E-06 61.6 4.7 73 328-409 1429-1503(1517)
3 KOG4407 Predicted Rho GTPase-a 89.4 0.29 6.2E-06 57.4 3.3 17 306-322 277-293 (1973)
4 KOG2991 Splicing regulator [RN 87.9 1.1 2.4E-05 44.5 5.9 7 307-313 46-52 (330)
5 KOG3598 Thyroid hormone recept 87.9 0.29 6.2E-06 57.8 2.0 7 66-72 1766-1772(2220)
6 PHA03420 E4 protein; Provision 84.1 0.95 2.1E-05 40.1 2.9 14 379-392 105-118 (137)
7 PF04684 BAF1_ABF1: BAF1 / ABF 82.0 1.1 2.3E-05 47.8 2.8 8 201-208 187-194 (496)
8 KOG2991 Splicing regulator [RN 79.6 2.4 5.3E-05 42.2 4.3 17 298-314 40-56 (330)
9 KOG1819 FYVE finger-containing 78.5 0.66 1.4E-05 49.8 0.0 10 55-64 254-263 (990)
10 PF10477 EIF4E-T: Nucleocytopl 72.7 1.9 4E-05 47.4 1.6 14 371-384 554-567 (578)
11 KOG1819 FYVE finger-containing 72.7 1 2.2E-05 48.5 -0.4 8 366-373 618-625 (990)
12 PF11498 Activator_LAG-3: Tran 67.3 1.8 3.9E-05 44.8 0.0 10 353-362 429-438 (468)
13 KOG4407 Predicted Rho GTPase-a 66.8 4.5 9.8E-05 48.1 3.0 8 355-362 386-393 (1973)
14 KOG4217 Nuclear receptors of t 65.9 3.8 8.3E-05 43.9 2.1 33 359-394 138-170 (605)
15 PF13248 zf-ribbon_3: zinc-rib 65.2 3.7 8.1E-05 26.5 1.2 10 31-40 3-12 (26)
16 PHA03420 E4 protein; Provision 62.9 3.5 7.6E-05 36.6 1.0 10 317-326 48-57 (137)
17 PF13240 zinc_ribbon_2: zinc-r 61.5 4.3 9.3E-05 25.7 0.9 9 33-41 2-10 (23)
18 KOG1883 Cofactor required for 57.6 12 0.00025 44.2 4.1 6 203-208 1292-1297(1517)
19 PHA00692 hypothetical protein 56.5 3.7 8.1E-05 32.1 0.0 18 40-57 28-45 (74)
20 PF04684 BAF1_ABF1: BAF1 / ABF 53.7 9.6 0.00021 40.8 2.5 8 201-208 165-172 (496)
21 PF10571 UPF0547: Uncharacteri 48.8 12 0.00026 24.5 1.5 14 27-40 11-24 (26)
22 PF03249 TSA: Type specific an 45.0 8.6 0.00019 40.3 0.6 19 188-208 159-177 (503)
23 PTZ00186 heat shock 70 kDa pre 44.9 12 0.00026 41.8 1.7 40 154-194 430-481 (657)
24 COG5624 TAF61 Transcription in 40.0 23 0.0005 37.5 2.8 31 182-212 156-187 (505)
25 COG1996 RPC10 DNA-directed RNA 38.1 13 0.00029 28.0 0.5 19 23-41 17-35 (49)
26 PF14255 Cys_rich_CPXG: Cystei 37.6 13 0.00027 28.3 0.3 14 32-45 2-15 (52)
27 PF08882 Acetone_carb_G: Aceto 36.6 27 0.00058 30.7 2.2 31 32-62 76-106 (112)
28 PF09889 DUF2116: Uncharacteri 35.6 19 0.00041 28.2 1.0 12 29-40 2-13 (59)
29 PF14149 YhfH: YhfH-like prote 33.2 9.1 0.0002 27.3 -1.0 19 23-41 6-24 (37)
30 PF07282 OrfB_Zn_ribbon: Putat 32.9 30 0.00064 26.7 1.8 26 29-54 27-55 (69)
31 TIGR00155 pqiA_fam integral me 30.7 29 0.00063 36.6 1.8 32 9-41 13-44 (403)
32 PRK15103 paraquat-inducible me 30.5 27 0.00058 37.1 1.5 33 8-41 9-41 (419)
33 smart00659 RPOLCX RNA polymera 30.2 23 0.00049 25.9 0.7 14 28-41 17-30 (44)
34 COG1885 Uncharacterized protei 30.0 27 0.00058 30.5 1.1 49 27-75 46-100 (115)
35 PF03604 DNA_RNApol_7kD: DNA d 26.6 39 0.00085 23.2 1.3 13 28-40 15-27 (32)
36 KOG4369 RTK signaling protein 26.6 33 0.00073 41.0 1.5 29 325-353 1864-1892(2131)
37 TIGR02098 MJ0042_CXXC MJ0042 f 26.0 28 0.00061 23.9 0.5 12 30-41 25-36 (38)
38 COG2995 PqiA Uncharacterized p 25.9 40 0.00087 35.7 1.8 56 11-73 20-76 (418)
39 PF05865 Cypo_polyhedrin: Cypo 25.7 67 0.0014 30.3 3.0 27 144-170 141-168 (248)
40 KOG3535 Adaptor protein Disabl 25.1 60 0.0013 34.8 2.9 29 362-390 335-366 (557)
41 KOG4601 Uncharacterized conser 24.6 1.5E+02 0.0032 29.6 5.2 57 167-223 111-193 (264)
42 PRK12495 hypothetical protein; 23.5 42 0.00091 32.9 1.3 31 27-64 39-69 (226)
43 KOG1151 Tousled-like protein k 22.7 29 0.00063 37.7 0.1 8 355-362 140-147 (775)
44 PRK08351 DNA-directed RNA poly 21.7 75 0.0016 25.0 2.2 31 30-63 15-45 (61)
45 PF07131 DUF1382: Protein of u 21.4 83 0.0018 24.8 2.3 21 51-71 22-49 (61)
46 PF08209 Sgf11: Sgf11 (transcr 21.1 42 0.00091 23.3 0.6 11 31-41 5-15 (33)
47 PF09845 DUF2072: Zn-ribbon co 20.9 43 0.00093 30.2 0.8 20 31-62 20-39 (131)
48 PF07960 CBP4: CBP4; InterPro 20.5 65 0.0014 29.0 1.8 17 55-71 29-49 (128)
No 1
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []. NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.
Probab=100.00 E-value=1.4e-36 Score=265.55 Aligned_cols=126 Identities=40% Similarity=0.699 Sum_probs=88.4
Q ss_pred CCCCceeCCChHHHHH-HHHHHHhcCCCCCCCCcccccccccccCCCCCCCCCCCCCCc-ccCCcceEEEecCCCCCCCC
Q 015081 49 LPAGVKFDPTDQELID-HLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGV-TRDGLSRHFFHRPSKAYTTG 126 (413)
Q Consensus 49 LPpGfRF~PTDeELV~-yL~~Ki~g~~l~~~~Pl~~~~Ip~id~e~DIy~~ePwdLPg~-~~~g~~~yFF~~~~rk~~~G 126 (413)
|||||||+|||+|||. ||++|+.+.++ |. ..+|++ +|||+.+||+||+. ...+++||||+++.+++.+|
T Consensus 1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~----~~-~~~i~~----~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~ 71 (129)
T PF02365_consen 1 LPPGFRFRPTDEELINHYLRPKILGEPL----PC-EDVIHD----VDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNG 71 (129)
T ss_dssp --TTEEE---HHHHHHCTHHHHHTT-HH----CS--CHSEE------GGGS-GGGCHHHSSS-SSEEEEEEE--------
T ss_pred CCCceEecCChHHHHHHHHHHHhcCCCC----Cc-ccceee----cccCccChHHhhhhccCCCceEEEEEecccccCCc
Confidence 8999999999999997 79999999864 22 245654 47999999999942 23456899999988888999
Q ss_pred CcccccccccccCCCCCcEEeecCCCceEEe-CCEEeeeeEEEeeEeecCCCCCCCCCCeEEEEEEeC
Q 015081 127 TRKRRKIQTECDLQGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLG 193 (413)
Q Consensus 127 ~R~rR~~~t~~~v~~g~G~Wk~tG~~k~I~~-~G~~VG~KktL~FY~~~G~~~~g~kT~WvMhEYsL~ 193 (413)
.|.+|++ ++|+||.+|++++|.. +|.+||+|++|+||. ++.+++.+|+|+||||+|.
T Consensus 72 ~r~~R~~--------~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~--~~~~~~~kt~W~M~EY~L~ 129 (129)
T PF02365_consen 72 GRPNRVT--------GGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYS--GKSPNGKKTGWVMHEYSLE 129 (129)
T ss_dssp --S-EEE--------TTEEEEEECEEEEEEE-TTCEEEEEEEEEEEE--SSTTS-EEEEEEEEEEEE-
T ss_pred ccccccc--------cceEEeecccccccccccceeeeeEEEEEEEe--ccCCCCCcCCeEEEEEEeC
Confidence 9999964 5899999999999998 899999999999997 6778889999999999984
No 2
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=93.86 E-value=0.067 Score=61.58 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhh-hhhhhhcccccccCCCCCCcccccCCC-CCCcceeeecCCCCcceeeeccccccccc
Q 015081 328 DHRQQQQQHQQQHQQQQQQQHH-THHQQIATTAFHISRPSHPISTIISPS-PLHHTSIILDEDSYHVSRIMLQNESFQVL 405 (413)
Q Consensus 328 ~~~~~~~~~qqqqq~qq~q~~~-~~~~~~~~~~~~~~~~~~p~~~~~sp~-~~~~~s~~l~~~~~~~~~~~~~~~~~~~~ 405 (413)
||.|+++|||++|||+++++|| =.|++.-+.+++.++|--|- +.-|. ++.| .+ -+| +.| |+|++.-++-
T Consensus 1429 hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~--~l~~~g~~~~---~~--~~y-~qH-mqqH~h~~~~ 1499 (1517)
T KOG1883|consen 1429 HQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPG--FLHPSGPVGH---VP--MQY-GQH-MQQHPHLPHH 1499 (1517)
T ss_pred hhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCc--cccccccccc---cc--hhh-HHH-HHhccCCCcc
Confidence 3444444444444444333333 34444556667665443332 33222 2222 11 223 555 7777766666
Q ss_pred ccCC
Q 015081 406 KQNP 409 (413)
Q Consensus 406 ~~~~ 409 (413)
.++|
T Consensus 1500 ~~~~ 1503 (1517)
T KOG1883|consen 1500 QQMP 1503 (1517)
T ss_pred ccCC
Confidence 5555
No 3
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=89.42 E-value=0.29 Score=57.37 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=7.4
Q ss_pred CCCCCCCcccCCCCCCC
Q 015081 306 PAHGTCEDIRDHHQRPH 322 (413)
Q Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (413)
+.+....+.|-|..+||
T Consensus 277 ~q~~Sq~qsHs~Pn~~~ 293 (1973)
T KOG4407|consen 277 PQSQSQSQSHSHPNTHH 293 (1973)
T ss_pred chhhhhcccCCCCCcCc
Confidence 34444444444444443
No 4
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=87.90 E-value=1.1 Score=44.46 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=2.8
Q ss_pred CCCCCCc
Q 015081 307 AHGTCED 313 (413)
Q Consensus 307 ~~~~~~~ 313 (413)
+++++.+
T Consensus 46 A~~~~tG 52 (330)
T KOG2991|consen 46 APGVRTG 52 (330)
T ss_pred CCCCccc
Confidence 3344433
No 5
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=87.87 E-value=0.29 Score=57.84 Aligned_cols=7 Identities=0% Similarity=-0.268 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 015081 66 LEAKVEA 72 (413)
Q Consensus 66 L~~Ki~g 72 (413)
+++|-+.
T Consensus 1766 ~~p~pR~ 1772 (2220)
T KOG3598|consen 1766 VLPFPRD 1772 (2220)
T ss_pred ccCCcch
Confidence 3444333
No 6
>PHA03420 E4 protein; Provisional
Probab=84.13 E-value=0.95 Score=40.07 Aligned_cols=14 Identities=36% Similarity=0.313 Sum_probs=6.3
Q ss_pred CcceeeecCCCCcc
Q 015081 379 HHTSIILDEDSYHV 392 (413)
Q Consensus 379 ~~~s~~l~~~~~~~ 392 (413)
.+-.||-=+||--|
T Consensus 105 ~qE~ViPVedsVTV 118 (137)
T PHA03420 105 GQEVVIPVEDSVTV 118 (137)
T ss_pred cceeEEecCCCeEE
Confidence 34444444455444
No 7
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=81.97 E-value=1.1 Score=47.82 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=4.4
Q ss_pred CCEEEEEE
Q 015081 201 GELVVSKI 208 (413)
Q Consensus 201 ~e~VLCKI 208 (413)
+.|||.||
T Consensus 187 ~~fvltki 194 (496)
T PF04684_consen 187 DKFVLTKI 194 (496)
T ss_pred HHHHHhcc
Confidence 35566555
No 8
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.63 E-value=2.4 Score=42.16 Aligned_cols=17 Identities=12% Similarity=-0.238 Sum_probs=7.8
Q ss_pred CCCcCCCCCCCCCCCcc
Q 015081 298 EASTAREAPAHGTCEDI 314 (413)
Q Consensus 298 ~~~~~~~~~~~~~~~~~ 314 (413)
.++++.+++...+-..+
T Consensus 40 ~~s~~~A~~~~tGm~~~ 56 (330)
T KOG2991|consen 40 FGSTTVAPGVRTGMILS 56 (330)
T ss_pred ccCCCCCCCCccchhhh
Confidence 34444555544444443
No 9
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=78.52 E-value=0.66 Score=49.80 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=5.7
Q ss_pred eCCChHHHHH
Q 015081 55 FDPTDQELID 64 (413)
Q Consensus 55 F~PTDeELV~ 64 (413)
|+|--.-||.
T Consensus 254 frpfrsilik 263 (990)
T KOG1819|consen 254 FRPFRSILIK 263 (990)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 10
>PF10477 EIF4E-T: Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E; InterPro: IPR018862 EIF4E-T is the transporter protein for shuttling the mRNA cap-binding protein EIF4E protein, targeting it for nuclear import. EIF4E-T contains several key binding domains including two functional leucine-rich NESs (nuclear export signals) between residues 438-447 and 613-638 in the human protein. The other two binding domains are an EIF4E-binding site, between residues 27-42 in Q9EST3 from SWISSPROT, and a bipartite NLS (nuclear localisation signals) between 194-211, and these lie in family EIF4E-T_N. EIF4E is the eukaryotic translation initiation factor 4E that is the rate-limiting factor for cap-dependent translation initiation [].
Probab=72.74 E-value=1.9 Score=47.44 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.3
Q ss_pred cccCCCCCCcceee
Q 015081 371 TIISPSPLHHTSII 384 (413)
Q Consensus 371 ~~~sp~~~~~~s~~ 384 (413)
+.++|+..+.||||
T Consensus 554 ~S~~p~aFTPTSVl 567 (578)
T PF10477_consen 554 NSPTPLAFTPTSVL 567 (578)
T ss_pred CCCCCCCCCcHHHH
Confidence 67778888999986
No 11
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=72.73 E-value=1 Score=48.46 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.3
Q ss_pred CCCccccc
Q 015081 366 SHPISTII 373 (413)
Q Consensus 366 ~~p~~~~~ 373 (413)
.+|...|-
T Consensus 618 pd~eqnia 625 (990)
T KOG1819|consen 618 PDPEQNIA 625 (990)
T ss_pred CChhhcCC
Confidence 34444443
No 12
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=67.34 E-value=1.8 Score=44.80 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhccccccc
Q 015081 353 QQIATTAFHI 362 (413)
Q Consensus 353 ~~~~~~~~~~ 362 (413)
|+-....+.|
T Consensus 429 hQn~~MGYgm 438 (468)
T PF11498_consen 429 HQNGGMGYGM 438 (468)
T ss_dssp ----------
T ss_pred hhccCcccCC
Confidence 3334444555
No 13
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=66.84 E-value=4.5 Score=48.07 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=4.1
Q ss_pred hccccccc
Q 015081 355 IATTAFHI 362 (413)
Q Consensus 355 ~~~~~~~~ 362 (413)
.+-.|.++
T Consensus 386 ~~~~~~~~ 393 (1973)
T KOG4407|consen 386 TVLSASSA 393 (1973)
T ss_pred hhhhhhcc
Confidence 44455554
No 14
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=65.87 E-value=3.8 Score=43.93 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=16.0
Q ss_pred ccccCCCCCCcccccCCCCCCcceeeecCCCCccee
Q 015081 359 AFHISRPSHPISTIISPSPLHHTSIILDEDSYHVSR 394 (413)
Q Consensus 359 ~~~~~~~~~p~~~~~sp~~~~~~s~~l~~~~~~~~~ 394 (413)
-+++++|++|-....-| .|....+...+.|+.-
T Consensus 138 ~~~~ss~~sPttpafqp---p~~~~wd~~a~~~~~p 170 (605)
T KOG4217|consen 138 YYKPSSPPSPTTPAFQP---PHSDLWDATAPGHFNP 170 (605)
T ss_pred cccCCCCCCCCCCCCCC---CCCccccccCccccCc
Confidence 35566666665444322 3333344445555543
No 15
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=65.22 E-value=3.7 Score=26.49 Aligned_cols=10 Identities=40% Similarity=1.225 Sum_probs=7.2
Q ss_pred CCCCCCCccc
Q 015081 31 KQCPGCGHKL 40 (413)
Q Consensus 31 ~~~~~~~~~~ 40 (413)
..||+||..|
T Consensus 3 ~~Cp~Cg~~~ 12 (26)
T PF13248_consen 3 MFCPNCGAEI 12 (26)
T ss_pred CCCcccCCcC
Confidence 4688888755
No 16
>PHA03420 E4 protein; Provisional
Probab=62.89 E-value=3.5 Score=36.58 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q 015081 317 HHQRPHHHLA 326 (413)
Q Consensus 317 ~~~~~~~~~~ 326 (413)
.++++||+.|
T Consensus 48 y~~~phH~PH 57 (137)
T PHA03420 48 YLDRPHHHPH 57 (137)
T ss_pred hccCCCCCCc
Confidence 3333333333
No 17
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=61.53 E-value=4.3 Score=25.72 Aligned_cols=9 Identities=56% Similarity=1.641 Sum_probs=6.3
Q ss_pred CCCCCcccc
Q 015081 33 CPGCGHKLE 41 (413)
Q Consensus 33 ~~~~~~~~~ 41 (413)
||+||++|+
T Consensus 2 Cp~CG~~~~ 10 (23)
T PF13240_consen 2 CPNCGAEIE 10 (23)
T ss_pred CcccCCCCC
Confidence 777777763
No 18
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=57.57 E-value=12 Score=44.20 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.8
Q ss_pred EEEEEE
Q 015081 203 LVVSKI 208 (413)
Q Consensus 203 ~VLCKI 208 (413)
|-||++
T Consensus 1292 lyl~~L 1297 (1517)
T KOG1883|consen 1292 LYLLHL 1297 (1517)
T ss_pred HHHHhc
Confidence 444444
No 19
>PHA00692 hypothetical protein
Probab=56.46 E-value=3.7 Score=32.15 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=14.7
Q ss_pred ccCCCCCCCCCCCceeCC
Q 015081 40 LEAKPDWLGLPAGVKFDP 57 (413)
Q Consensus 40 ~~~~~~~~~LPpGfRF~P 57 (413)
-|++-.++..||||||--
T Consensus 28 edrthyfveyppgfrfgg 45 (74)
T PHA00692 28 EDRTHYFVEYPPGFRFGG 45 (74)
T ss_pred ccceeEeEecCCCccccc
Confidence 447788899999999953
No 20
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=53.67 E-value=9.6 Score=40.83 Aligned_cols=8 Identities=63% Similarity=0.982 Sum_probs=4.6
Q ss_pred CCEEEEEE
Q 015081 201 GELVVSKI 208 (413)
Q Consensus 201 ~e~VLCKI 208 (413)
+-|||-||
T Consensus 165 g~f~v~k~ 172 (496)
T PF04684_consen 165 GPFVVTKI 172 (496)
T ss_pred CceEEEee
Confidence 45566665
No 21
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.82 E-value=12 Score=24.47 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCccc
Q 015081 27 LCGSKQCPGCGHKL 40 (413)
Q Consensus 27 ~~~~~~~~~~~~~~ 40 (413)
+...+.||.||+.+
T Consensus 11 ~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 11 PESAKFCPHCGYDF 24 (26)
T ss_pred hhhcCcCCCCCCCC
Confidence 34455566666543
No 22
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=45.03 E-value=8.6 Score=40.26 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=9.7
Q ss_pred EEEEeCCCCcccCCCEEEEEE
Q 015081 188 HQYHLGQHEEEKEGELVVSKI 208 (413)
Q Consensus 188 hEYsL~~~~~~~~~e~VLCKI 208 (413)
-||.+.++... +.+|+=-|
T Consensus 159 IdYmV~DPNNP--g~mvvNPV 177 (503)
T PF03249_consen 159 IDYMVKDPNNP--GAMVVNPV 177 (503)
T ss_pred ceeECCCCCCC--CCeeechh
Confidence 47777766433 34444333
No 23
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=44.91 E-value=12 Score=41.78 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=22.6
Q ss_pred eEEeCCEEeeeeEEEeeEeec------------CCCCCCCCCCeEEEEEEeCC
Q 015081 154 PVMVNGKQKGCKKILVLYTNF------------GKNRKPEKTNWVMHQYHLGQ 194 (413)
Q Consensus 154 ~I~~~G~~VG~KktL~FY~~~------------G~~~~g~kT~WvMhEYsL~~ 194 (413)
+|+..+..+-.+++..|+... |. +.-.+.+..+-+|.|..
T Consensus 430 ~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe-~~~~~~n~~lg~~~l~~ 481 (657)
T PTZ00186 430 RMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGE-REMAADNQMMGQFDLVG 481 (657)
T ss_pred EEEeCCCEeeEEEeeccccccCCCceEEEEEEEec-ccccccccccceEEEcC
Confidence 455566667777776665421 22 12234566777887753
No 24
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.95 E-value=23 Score=37.54 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=14.1
Q ss_pred CCCeEEEEEEeCCCCc-ccCCCEEEEEEEeeC
Q 015081 182 KTNWVMHQYHLGQHEE-EKEGELVVSKIFYQT 212 (413)
Q Consensus 182 kT~WvMhEYsL~~~~~-~~~~e~VLCKIf~K~ 212 (413)
--+|.-.+|+...... .-.+.|-+-+|.++.
T Consensus 156 ~~n~~~~n~r~~s~~~~~l~~~w~~l~Vk~~~ 187 (505)
T COG5624 156 GWNWRPVNFRGQSRNANGLFGAWPYLEVKSKD 187 (505)
T ss_pred hhccCchhHhhhHHHHHHHhccCceeEEeHHh
Confidence 3456666665544321 123355444554443
No 25
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=38.10 E-value=13 Score=28.02 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=13.4
Q ss_pred hcccccCCCCCCCCCcccc
Q 015081 23 EEHQLCGSKQCPGCGHKLE 41 (413)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (413)
|..+.-.--.||+||++|-
T Consensus 17 ~~~~~~~~irCp~Cg~rIl 35 (49)
T COG1996 17 ELDQETRGIRCPYCGSRIL 35 (49)
T ss_pred ehhhccCceeCCCCCcEEE
Confidence 3344455568999999995
No 26
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=37.60 E-value=13 Score=28.34 Aligned_cols=14 Identities=50% Similarity=0.982 Sum_probs=11.4
Q ss_pred CCCCCCccccCCCC
Q 015081 32 QCPGCGHKLEAKPD 45 (413)
Q Consensus 32 ~~~~~~~~~~~~~~ 45 (413)
.||+||+.|+...|
T Consensus 2 ~CPyCge~~~~~iD 15 (52)
T PF14255_consen 2 QCPYCGEPIEILID 15 (52)
T ss_pred CCCCCCCeeEEEEe
Confidence 59999999976555
No 27
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=36.63 E-value=27 Score=30.68 Aligned_cols=31 Identities=35% Similarity=0.745 Sum_probs=26.1
Q ss_pred CCCCCCccccCCCCCCCCCCCceeCCChHHH
Q 015081 32 QCPGCGHKLEAKPDWLGLPAGVKFDPTDQEL 62 (413)
Q Consensus 32 ~~~~~~~~~~~~~~~~~LPpGfRF~PTDeEL 62 (413)
.||+||-.+|+.-..++.|+=+-|-|.-+-|
T Consensus 76 yCP~Cgt~levE~~~Pg~P~~hD~epDid~f 106 (112)
T PF08882_consen 76 YCPGCGTQLEVEAPPPGYPPIHDFEPDIDTF 106 (112)
T ss_pred ECCCCcceeEEccCCCCCCceEecccCHHHH
Confidence 5999999999998888888888898865544
No 28
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.65 E-value=19 Score=28.17 Aligned_cols=12 Identities=42% Similarity=1.090 Sum_probs=10.1
Q ss_pred CCCCCCCCCccc
Q 015081 29 GSKQCPGCGHKL 40 (413)
Q Consensus 29 ~~~~~~~~~~~~ 40 (413)
.-++||+||..|
T Consensus 2 ~HkHC~~CG~~I 13 (59)
T PF09889_consen 2 PHKHCPVCGKPI 13 (59)
T ss_pred CCCcCCcCCCcC
Confidence 347999999988
No 29
>PF14149 YhfH: YhfH-like protein
Probab=33.16 E-value=9.1 Score=27.29 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.3
Q ss_pred hcccccCCCCCCCCCcccc
Q 015081 23 EEHQLCGSKQCPGCGHKLE 41 (413)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (413)
|=-+..+.|.|+-||..|+
T Consensus 6 eFfrnLp~K~C~~CG~~i~ 24 (37)
T PF14149_consen 6 EFFRNLPPKKCTECGKEIE 24 (37)
T ss_pred HHHHhCCCcccHHHHHHHH
Confidence 3345678899999999996
No 30
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.90 E-value=30 Score=26.72 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=17.5
Q ss_pred CCCCCCCCCccccC--CCCCCCCC-CCce
Q 015081 29 GSKQCPGCGHKLEA--KPDWLGLP-AGVK 54 (413)
Q Consensus 29 ~~~~~~~~~~~~~~--~~~~~~LP-pGfR 54 (413)
.|+.||.||+.... ...++.-| =|+.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCE
Confidence 68889999999876 33444444 4444
No 31
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=30.69 E-value=29 Score=36.57 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=24.9
Q ss_pred ccccCcchhhhhhhhcccccCCCCCCCCCcccc
Q 015081 9 GTNISSSDLIDAKLEEHQLCGSKQCPGCGHKLE 41 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (413)
...|..+|++ .++.....-+.-.||+||+++-
T Consensus 13 ~~~C~~Cd~l-~~~~~l~~g~~a~CpRCg~~L~ 44 (403)
T TIGR00155 13 HILCSQCDML-VALPRIESGQKAACPRCGTTLT 44 (403)
T ss_pred eeeCCCCCCc-ccccCCCCCCeeECCCCCCCCc
Confidence 3479999999 5555655666778999999995
No 32
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=30.46 E-value=27 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=26.2
Q ss_pred cccccCcchhhhhhhhcccccCCCCCCCCCcccc
Q 015081 8 LGTNISSSDLIDAKLEEHQLCGSKQCPGCGHKLE 41 (413)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (413)
..+.|..++++ .++.....-+.-.||+||+++.
T Consensus 9 ~~~~C~~Cd~l-~~~~~l~~g~~a~CpRCg~~L~ 41 (419)
T PRK15103 9 KHILCPQCDML-VALPRLEHGQKAACPRCGTTLT 41 (419)
T ss_pred CcccCCCCCce-eecCCCCCCCeeECCCCCCCCc
Confidence 34689999999 6666666666788999999994
No 33
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.23 E-value=23 Score=25.92 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=11.5
Q ss_pred cCCCCCCCCCcccc
Q 015081 28 CGSKQCPGCGHKLE 41 (413)
Q Consensus 28 ~~~~~~~~~~~~~~ 41 (413)
...-.||+||+.|-
T Consensus 17 ~~~irC~~CG~rIl 30 (44)
T smart00659 17 KDVVRCRECGYRIL 30 (44)
T ss_pred CCceECCCCCceEE
Confidence 35578999999995
No 34
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.01 E-value=27 Score=30.47 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=27.2
Q ss_pred ccCCCCCCCCCccccCCCCCCCC-CCCc-----eeCCChHHHHHHHHHHHhcCCC
Q 015081 27 LCGSKQCPGCGHKLEAKPDWLGL-PAGV-----KFDPTDQELIDHLEAKVEAKDM 75 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~L-PpGf-----RF~PTDeELV~yL~~Ki~g~~l 75 (413)
--|++.||-||..+|.-.-..+. -.|. .|+-.-.|=..-..++..|..+
T Consensus 46 e~G~t~CP~Cg~~~e~~fvva~~aLVgl~l~mkVFNaes~EHA~RIAK~eIGk~L 100 (115)
T COG1885 46 EVGSTSCPKCGEPFESAFVVANTALVGLILSMKVFNAESDEHAERIAKAEIGKAL 100 (115)
T ss_pred ecccccCCCCCCccceeEEEecceeEEEEEEEEEecCCCHHHHHHHHHHHHhhHh
Confidence 46899999999999732111000 1233 3776655555444444455544
No 35
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=26.63 E-value=39 Score=23.18 Aligned_cols=13 Identities=38% Similarity=1.173 Sum_probs=9.4
Q ss_pred cCCCCCCCCCccc
Q 015081 28 CGSKQCPGCGHKL 40 (413)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (413)
...-.|++||+.|
T Consensus 15 ~~~irC~~CG~RI 27 (32)
T PF03604_consen 15 GDPIRCPECGHRI 27 (32)
T ss_dssp SSTSSBSSSS-SE
T ss_pred CCcEECCcCCCeE
Confidence 3456899999987
No 36
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=26.60 E-value=33 Score=40.98 Aligned_cols=29 Identities=38% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhhhhhhh
Q 015081 325 LAHDHRQQQQQHQQQHQQQQQQQHHTHHQ 353 (413)
Q Consensus 325 ~~~~~~~~~~~~qqqqq~qq~q~~~~~~~ 353 (413)
+|.+++|..|||||.+||-|||-+++..+
T Consensus 1864 q~lq~~q~lqqqqq~~qq~~~~~~q~~sq 1892 (2131)
T KOG4369|consen 1864 QHLQQQQALQQQQQRIQQFQQQYQQHQSQ 1892 (2131)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCC
No 37
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=25.98 E-value=28 Score=23.87 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=8.2
Q ss_pred CCCCCCCCcccc
Q 015081 30 SKQCPGCGHKLE 41 (413)
Q Consensus 30 ~~~~~~~~~~~~ 41 (413)
.-.||+||+.|.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 456888877763
No 38
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=25.88 E-value=40 Score=35.67 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=31.1
Q ss_pred ccCcchhhhhhhhcccccCCCCCCCCCccccCCCCCCCCCCCceeCCChHHHHH-HHHHHHhcC
Q 015081 11 NISSSDLIDAKLEEHQLCGSKQCPGCGHKLEAKPDWLGLPAGVKFDPTDQELID-HLEAKVEAK 73 (413)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~PTDeELV~-yL~~Ki~g~ 73 (413)
-|+.++++ --+-+..--.+-.||+|||+|-+..+|.- =+|+---|-. .|++-..+.
T Consensus 20 ~C~eCd~~-~~~P~l~~~q~A~CPRC~~~l~~~~~~sl------~r~~a~A~s~LiLm~fa~~f 76 (418)
T COG2995 20 LCPECDML-VSLPRLDSGQSAYCPRCGHTLTRGGDWSL------QRPAAYALAALILMPFALGF 76 (418)
T ss_pred cCCCCCce-eccccCCCCCcccCCCCCCccccCCCCCc------cchHHHHHHHHHHHHHHcCC
Confidence 45555554 22234444557789999999976666542 1333333333 456555443
No 39
>PF05865 Cypo_polyhedrin: Cypovirus polyhedrin protein; InterPro: IPR008464 This family consists of several Cypovirus polyhedrin proteins. Polyhedrin is known to form a crystalline matrix (polyhedra) in infected insect cells [].; PDB: 2OH7_A 2OH5_A 2OH6_A.
Probab=25.68 E-value=67 Score=30.31 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=18.1
Q ss_pred cEEeecC-CCceEEeCCEEeeeeEEEee
Q 015081 144 TRWHKTG-KTRPVMVNGKQKGCKKILVL 170 (413)
Q Consensus 144 G~Wk~tG-~~k~I~~~G~~VG~KktL~F 170 (413)
--|.+|| +-+.|..+|++||+...|.+
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T PF05865_consen 141 HPWEATGIKYRKIHRDGEIVGYSHYFEL 168 (248)
T ss_dssp -S-B--GGG-EEEEETTEEEEEEEEEE-
T ss_pred CCccccCceEEEeeccceEeeeeeeeec
Confidence 4599999 56788899999999887754
No 40
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=25.08 E-value=60 Score=34.76 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=14.3
Q ss_pred cCCCCCCcccccCCC-CCCc--ceeeecCCCC
Q 015081 362 ISRPSHPISTIISPS-PLHH--TSIILDEDSY 390 (413)
Q Consensus 362 ~~~~~~p~~~~~sp~-~~~~--~s~~l~~~~~ 390 (413)
..+-+.|+.....-= +.|| =+++|.+||+
T Consensus 335 ~~s~tqP~a~~qng~~~~~qq~f~~~~~~np~ 366 (557)
T KOG3535|consen 335 GFSDTQPFASAQNGQARHHQQPFQLLLQHNPV 366 (557)
T ss_pred CCCCCCchhhcCCCccccccCCcceeccCCCc
Confidence 355666666544221 2233 3556666654
No 41
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.61 E-value=1.5e+02 Score=29.59 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=34.2
Q ss_pred EEeeEeecCCCCCC----------CCCCeEEEEEEeCCCCc----------------ccCCCEEEEEEEeeCCccccCcc
Q 015081 167 ILVLYTNFGKNRKP----------EKTNWVMHQYHLGQHEE----------------EKEGELVVSKIFYQTQPRQCNWS 220 (413)
Q Consensus 167 tL~FY~~~G~~~~g----------~kT~WvMhEYsL~~~~~----------------~~~~e~VLCKIf~K~~~~~~~~~ 220 (413)
+|.||......+.| .+-+|--|+-.+..++. .....+|||-=|+-..+-.....
T Consensus 111 ILDFyVheS~QR~G~G~~lfdyMl~kE~vephQ~a~DrPS~kLl~Fm~khYgl~~tVwQ~nnfvlfegfF~~~~~~~~a~ 190 (264)
T KOG4601|consen 111 ILDFYVHESEQRSGNGFKLFDYMLKKENVEPHQCAFDRPSAKLLQFMEKHYGLKDTVWQSNNFVLFEGFFIGVPFTPRAT 190 (264)
T ss_pred EEEEEeehhhhhcCchHHHHHHHHHhcCCCchheeccChHHHHHHHHHHhcCccccccccCcEEEEehhhcccccccccc
Confidence 34566644444444 35788888888877641 23568999998876633333333
Q ss_pred cCC
Q 015081 221 EKS 223 (413)
Q Consensus 221 ~~~ 223 (413)
+++
T Consensus 191 ~~p 193 (264)
T KOG4601|consen 191 KRP 193 (264)
T ss_pred cCC
Confidence 333
No 42
>PRK12495 hypothetical protein; Provisional
Probab=23.50 E-value=42 Score=32.85 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=25.8
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCCceeCCChHHHHH
Q 015081 27 LCGSKQCPGCGHKLEAKPDWLGLPAGVKFDPTDQELID 64 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~LPpGfRF~PTDeELV~ 64 (413)
.-..+.|+.||..|- .| +|+.|.|+=++++.
T Consensus 39 tmsa~hC~~CG~PIp------a~-pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 39 TMTNAHCDECGDPIF------RH-DGQEFCPTCQQPVT 69 (226)
T ss_pred ccchhhcccccCccc------CC-CCeeECCCCCCccc
Confidence 456789999999993 56 79999999888776
No 43
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=22.67 E-value=29 Score=37.73 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=4.0
Q ss_pred hccccccc
Q 015081 355 IATTAFHI 362 (413)
Q Consensus 355 ~~~~~~~~ 362 (413)
..|+-.|+
T Consensus 140 s~~~~~~~ 147 (775)
T KOG1151|consen 140 SSAALQHV 147 (775)
T ss_pred cchhhhcc
Confidence 44455555
No 44
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=21.66 E-value=75 Score=25.05 Aligned_cols=31 Identities=23% Similarity=0.714 Sum_probs=24.3
Q ss_pred CCCCCCCCccccCCCCCCCCCCCceeCCChHHHH
Q 015081 30 SKQCPGCGHKLEAKPDWLGLPAGVKFDPTDQELI 63 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~LPpGfRF~PTDeELV 63 (413)
...||+||-- +-+.+|.+|-. -.+|...|+.
T Consensus 15 ~~~CP~Cgs~-~~T~~W~G~vi--I~dPe~S~IA 45 (61)
T PRK08351 15 EDRCPVCGSR-DLSDEWFDLVI--IIDVENSRIA 45 (61)
T ss_pred CCcCCCCcCC-ccccccccEEE--EeCCcHhHHH
Confidence 4479999984 36789998654 7899988887
No 45
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.39 E-value=83 Score=24.79 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=15.8
Q ss_pred CCceeCC----ChHHHHHH---HHHHHh
Q 015081 51 AGVKFDP----TDQELIDH---LEAKVE 71 (413)
Q Consensus 51 pGfRF~P----TDeELV~y---L~~Ki~ 71 (413)
.|+||.| ||+|+... |.+|+-
T Consensus 22 ~GIRFVpiPv~~dee~~~L~s~~~~kLe 49 (61)
T PF07131_consen 22 IGIRFVPIPVVTDEEFHTLSSQLSQKLE 49 (61)
T ss_pred cCceeeccccccHHHHHHHHHHHHHHHH
Confidence 5999999 78888763 666654
No 46
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=21.09 E-value=42 Score=23.25 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=8.1
Q ss_pred CCCCCCCcccc
Q 015081 31 KQCPGCGHKLE 41 (413)
Q Consensus 31 ~~~~~~~~~~~ 41 (413)
-.||+|+.+|-
T Consensus 5 ~~C~nC~R~v~ 15 (33)
T PF08209_consen 5 VECPNCGRPVA 15 (33)
T ss_dssp EE-TTTSSEEE
T ss_pred EECCCCcCCcc
Confidence 46999999983
No 47
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.86 E-value=43 Score=30.24 Aligned_cols=20 Identities=25% Similarity=0.830 Sum_probs=12.5
Q ss_pred CCCCCCCccccCCCCCCCCCCCceeCCChHHH
Q 015081 31 KQCPGCGHKLEAKPDWLGLPAGVKFDPTDQEL 62 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~LPpGfRF~PTDeEL 62 (413)
+.||.||.+. |.|.|.+..-
T Consensus 20 ~GCP~CGg~k------------F~yv~~~~~~ 39 (131)
T PF09845_consen 20 SGCPECGGNK------------FQYVPEEKDA 39 (131)
T ss_pred ccCcccCCcc------------eEEcCCCccc
Confidence 5677777654 5666665543
No 48
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=20.46 E-value=65 Score=28.99 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=12.7
Q ss_pred eCCChHHHHH-H---HHHHHh
Q 015081 55 FDPTDQELID-H---LEAKVE 71 (413)
Q Consensus 55 F~PTDeELV~-y---L~~Ki~ 71 (413)
=.||||||+. | |+++..
T Consensus 29 ~tPTeEeL~~r~sPELrkr~~ 49 (128)
T PF07960_consen 29 TTPTEEELFKRYSPELRKRYL 49 (128)
T ss_pred cCCCHHHHHHhcCHHHHHHHH
Confidence 4799999997 5 665544
Done!