Query 015081
Match_columns 413
No_of_seqs 252 out of 1063
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3E-47 1E-51 349.3 14.1 150 44-213 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.1E-47 7.2E-52 349.6 12.7 152 43-214 11-168 (171)
3 1qb3_A Cyclin-dependent kinase 89.0 0.066 2.3E-06 47.4 -0.4 15 181-195 81-95 (150)
4 3tla_A MCCF; serine protease, 60.5 1.8 6.2E-05 43.4 0.0 6 363-368 49-54 (371)
5 4g1u_A Hemin transport system 53.7 2.7 9.4E-05 42.0 0.0 11 400-410 97-107 (357)
6 4faj_A PRGZ; substrate binding 49.0 3.6 0.00012 40.5 0.0 17 368-384 69-85 (564)
7 1ldd_A APC2WHB, anaphase promo 44.8 11 0.00038 29.5 2.2 26 50-75 37-63 (74)
8 3tla_A MCCF; serine protease, 41.8 5.5 0.00019 39.9 0.0 11 372-382 34-44 (371)
9 4grv_A Neurotensin receptor ty 41.7 5.5 0.00019 40.2 0.0 7 97-103 99-105 (510)
10 2apo_B Ribosome biogenesis pro 41.1 16 0.00056 27.5 2.6 24 30-60 18-41 (60)
11 3tr9_A Dihydropteroate synthas 38.9 6.4 0.00022 38.8 0.0 11 54-65 44-54 (314)
12 2jz8_A Uncharacterized protein 38.7 14 0.00049 29.9 2.0 31 28-58 46-79 (87)
13 1qwz_A NPQTN specific sortase 36.1 12 0.0004 35.1 1.3 7 381-387 99-105 (235)
14 2zyd_A 6-phosphogluconate dehy 35.2 8 0.00027 39.7 0.0 9 379-387 104-112 (480)
15 1svj_A Potassium-transporting 34.1 8.5 0.00029 33.8 0.0 9 365-373 49-57 (156)
16 2l4h_A Calcium and integrin-bi 34.0 8.6 0.00029 34.3 0.0 6 319-324 4-9 (214)
17 3u61_A DNA polymerase accessor 32.5 9.4 0.00032 35.3 0.0 11 57-67 34-44 (199)
18 3qx3_A DNA topoisomerase 2-bet 31.5 10 0.00034 41.8 0.0 15 59-73 467-481 (803)
19 2f9y_B Acetyl-coenzyme A carbo 31.4 18 0.0006 35.2 1.7 39 29-67 23-65 (304)
20 3tr9_A Dihydropteroate synthas 31.4 10 0.00034 37.4 0.0 8 55-62 83-90 (314)
21 3tq8_A Dihydrofolate reductase 31.3 14 0.00046 33.3 0.8 8 282-289 153-160 (178)
22 3rce_A Oligosaccharide transfe 30.9 10 0.00035 41.3 0.0 7 286-292 703-709 (724)
23 2l72_A Tgadf, actin depolymeri 29.2 12 0.0004 32.3 0.0 6 408-413 88-93 (139)
24 4g2c_A DYP2; DYE peroxidase, o 28.8 12 0.00041 39.1 0.0 19 380-398 55-73 (493)
25 1qwz_A NPQTN specific sortase 27.8 19 0.00064 33.8 1.2 6 388-393 83-88 (235)
26 3uno_A Probable bacterioferrit 27.6 22 0.00075 32.0 1.6 25 291-316 161-185 (189)
27 1d1d_A Protein (capsid protein 27.5 13 0.00044 35.8 0.0 11 316-326 3-13 (262)
28 3ga4_A Dolichyl-diphosphooligo 27.4 13 0.00044 33.4 0.0 8 201-208 80-87 (178)
29 4e4j_A Arginine deiminase; L-a 25.6 15 0.0005 37.2 0.0 47 358-404 34-88 (433)
30 4grv_A Neurotensin receptor ty 25.5 15 0.0005 37.0 0.0 6 287-292 477-482 (510)
31 2oh5_A Polyhedrin, C-polyhedri 24.5 42 0.0014 30.3 2.8 27 144-170 141-168 (248)
32 2kn9_A Rubredoxin; metalloprot 23.5 21 0.00073 28.4 0.6 41 13-56 13-55 (81)
33 2aus_D NOP10, ribosome biogene 23.3 33 0.0011 25.8 1.6 23 31-60 18-40 (60)
34 3h0g_L DNA-directed RNA polyme 22.1 27 0.00091 26.6 0.9 15 27-41 35-49 (63)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3e-47 Score=349.34 Aligned_cols=150 Identities=31% Similarity=0.583 Sum_probs=125.5
Q ss_pred CCCCCCCCCceeCCChHHHHH-HHHHHHhcCCCCCCCCcccccccccccCCCCCCCCCCCCCCcccCC-cceEEEecCCC
Q 015081 44 PDWLGLPAGVKFDPTDQELID-HLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDG-LSRHFFHRPSK 121 (413)
Q Consensus 44 ~~~~~LPpGfRF~PTDeELV~-yL~~Ki~g~~l~~~~Pl~~~~Ip~id~e~DIy~~ePwdLPg~~~~g-~~~yFF~~~~r 121 (413)
...++|||||||+|||||||. ||++|+.+.++ +..+|+++ |||.++||+||+.+..| .+||||+.+.+
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~------~~~~I~ev----Dvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ 79 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRL------PVPIIAEV----DLYKFDPWDLPERALFGAREWYFFTPRDR 79 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCC------SSSCCEEC----CGGGSCGGGSGGGCSSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCC------CcCeeeec----ccccCCchhhhhhhccCCceEEEEecccc
Confidence 456789999999999999999 59999998754 45677755 79999999999887544 57899999899
Q ss_pred CCCCCCcccccccccccCCCCCcEEeecCCCceEEeCCEEeeeeEEEeeEeecCCCCCCCCCCeEEEEEEeCCCCcc---
Q 015081 122 AYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEE--- 198 (413)
Q Consensus 122 k~~~G~R~rR~~~t~~~v~~g~G~Wk~tG~~k~I~~~G~~VG~KktL~FY~~~G~~~~g~kT~WvMhEYsL~~~~~~--- 198 (413)
||++|.|.+|++ ++||||++|++++|..+|.+||+||+|+||. |+++++.||+|+||||+|......
T Consensus 80 ky~~g~R~nR~t--------~~G~WkatG~dk~I~~~g~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~L~~~~~~~~~ 149 (174)
T 3ulx_A 80 KYPNGSRPNRAA--------GNGYWKATGADKPVAPRGRTLGIKKALVFYA--GKAPRGVKTDWIMHEYRLADAGRAAAG 149 (174)
T ss_dssp -----CCSCEEE--------TTEEEEECSCCEEECCSSSCCEEEEEEEEEE--SSTTSCEEEEEEEEEEEECSCC-----
T ss_pred ccCCCCCceeec--------CCceEccCCCCcEEeeCCcEEEEEEEEEEec--CCCCCCCcCCeEEEEEEeCCCCCcccc
Confidence 999999999986 5899999999999999899999999999998 888999999999999999986421
Q ss_pred ------cCCCEEEEEEEeeCC
Q 015081 199 ------KEGELVVSKIFYQTQ 213 (413)
Q Consensus 199 ------~~~e~VLCKIf~K~~ 213 (413)
..++|||||||+|+.
T Consensus 150 ~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 150 AKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ------CCSSEEEEEEEESCC
T ss_pred cccCCCCCCCEEEEEEEEcCC
Confidence 357999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.1e-47 Score=349.58 Aligned_cols=152 Identities=33% Similarity=0.542 Sum_probs=123.5
Q ss_pred CCCCCCCCCCceeCCChHHHHH-HHHHHHhcCCCCCCCCcccccccccccCCCCCCCCCCCCCCcccCC-cceEEEecCC
Q 015081 43 KPDWLGLPAGVKFDPTDQELID-HLEAKVEAKDMVKPHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDG-LSRHFFHRPS 120 (413)
Q Consensus 43 ~~~~~~LPpGfRF~PTDeELV~-yL~~Ki~g~~l~~~~Pl~~~~Ip~id~e~DIy~~ePwdLPg~~~~g-~~~yFF~~~~ 120 (413)
...++.|||||||+|||||||. ||++|+.+.++ +..+|+++ |||.+|||+||+....| .+||||+.+.
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~------~~~~I~e~----Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~ 80 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDF------SLQLIAEI----DLYKFDPWVLPNKALFGEKEWYFFSPRD 80 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCC------SSCCSEEC----CGGGSCGGGHHHHSSSCSSEEEEEEECC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCC------CCCeEeec----ccccCChhHhhchhhcCCccEEEEeccc
Confidence 3678899999999999999999 59999998744 45678765 79999999999877544 5789999999
Q ss_pred CCCCCCCcccccccccccCCCCCcEEeecCCCceEEeCCEEeeeeEEEeeEeecCCCCCCCCCCeEEEEEEeCCCCc---
Q 015081 121 KAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEE--- 197 (413)
Q Consensus 121 rk~~~G~R~rR~~~t~~~v~~g~G~Wk~tG~~k~I~~~G~~VG~KktL~FY~~~G~~~~g~kT~WvMhEYsL~~~~~--- 197 (413)
++|++|.|.+|++ ++||||++|++++|..+|.+||+||+|+||. |+++++.||+|+||||+|.....
T Consensus 81 ~k~~~g~R~~R~t--------~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~--g~~p~g~kT~WvMhEY~l~~~~~~~~ 150 (171)
T 1ut7_A 81 RKYPNGSRPNRVA--------GSGYWKATGTDKIISTEGQRVGIKKALVFYI--GKAPKGTKTNWIMHEYRLIEPSRRNG 150 (171)
T ss_dssp C-------CCEEE--------TTEEEEEEEEEEEEEETTEEEEEEEEEEEEE--SSTTSCEEEEEEEEEEEECCCC----
T ss_pred cccCCCCcccccC--------CCCEEeccCCCceEEecCcEEEEEEEEEEEc--CcCCCCCcCCeEEEEEEcCCCccccC
Confidence 9999999999986 5899999999999999999999999999999 88899999999999999998642
Q ss_pred -ccCCCEEEEEEEeeCCc
Q 015081 198 -EKEGELVVSKIFYQTQP 214 (413)
Q Consensus 198 -~~~~e~VLCKIf~K~~~ 214 (413)
...++|||||||+|...
T Consensus 151 ~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 151 STKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ----CCEEEEEEEECC--
T ss_pred cccCCCEEEEEEEEcCCC
Confidence 24579999999999754
No 3
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=89.02 E-value=0.066 Score=47.36 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=10.6
Q ss_pred CCCCeEEEEEEeCCC
Q 015081 181 EKTNWVMHQYHLGQH 195 (413)
Q Consensus 181 ~kT~WvMhEYsL~~~ 195 (413)
..-+|+..+++-..+
T Consensus 81 QS~GW~HYmih~PEP 95 (150)
T 1qb3_A 81 QSLGWEHYECHAPEP 95 (150)
T ss_dssp CCTTCEEESCCCCCT
T ss_pred cCcCcEEeeecCCCC
Confidence 346799988876644
No 4
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=60.49 E-value=1.8 Score=43.45 Aligned_cols=6 Identities=33% Similarity=0.357 Sum_probs=2.3
Q ss_pred CCCCCC
Q 015081 363 SRPSHP 368 (413)
Q Consensus 363 ~~~~~p 368 (413)
.+||.|
T Consensus 49 vaPSs~ 54 (371)
T 3tla_A 49 FSSSAP 54 (371)
T ss_dssp ECSSCC
T ss_pred EeCCCC
Confidence 333333
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=53.74 E-value=2.7 Score=42.02 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=6.8
Q ss_pred ccccccccCCe
Q 015081 400 ESFQVLKQNPV 410 (413)
Q Consensus 400 ~~~~~~~~~~~ 410 (413)
--||-+++||.
T Consensus 97 ~~~Q~~~rNPL 107 (357)
T 4g1u_A 97 TIMQGLFRNPL 107 (357)
T ss_dssp HHHHHHTTCTT
T ss_pred HHHHHHhCCCC
Confidence 44666777764
No 6
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=49.01 E-value=3.6 Score=40.51 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=8.0
Q ss_pred CcccccCCCCCCcceee
Q 015081 368 PISTIISPSPLHHTSII 384 (413)
Q Consensus 368 p~~~~~sp~~~~~~s~~ 384 (413)
|+..+-+.-.+.++||.
T Consensus 69 pvqsldpatavdqtsit 85 (564)
T 4faj_A 69 PVQSLDPATAVDQTSIT 85 (564)
T ss_dssp CCCCSCTTTCCBHHHHH
T ss_pred cccccCcccccchhhHH
Confidence 44333322244677763
No 7
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.79 E-value=11 Score=29.52 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCceeCC-ChHHHHHHHHHHHhcCCC
Q 015081 50 PAGVKFDP-TDQELIDHLEAKVEAKDM 75 (413)
Q Consensus 50 PpGfRF~P-TDeELV~yL~~Ki~g~~l 75 (413)
|.|+.|+. |++||-.||-.|+..+.+
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 67999999 999999999999987754
No 8
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=41.75 E-value=5.5 Score=39.93 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=5.4
Q ss_pred ccCCCCCCcce
Q 015081 372 IISPSPLHHTS 382 (413)
Q Consensus 372 ~~sp~~~~~~s 382 (413)
++-||+|..|.
T Consensus 34 ~i~P~~Lk~GD 44 (371)
T 3tla_A 34 PLLAAPLAVGD 44 (371)
T ss_dssp CBCCCCCCTTC
T ss_pred cCCCCCCCCcC
Confidence 34455555443
No 9
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=41.74 E-value=5.5 Score=40.16 Aligned_cols=7 Identities=29% Similarity=0.454 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 015081 97 YTHPEKL 103 (413)
Q Consensus 97 ~~ePwdL 103 (413)
...+|-+
T Consensus 99 ~~~~w~~ 105 (510)
T 4grv_A 99 VHHPWAF 105 (510)
T ss_dssp CCSSCSS
T ss_pred hCCCEEh
Confidence 3456655
No 10
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=41.05 E-value=16 Score=27.50 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=16.3
Q ss_pred CCCCCCCCccccCCCCCCCCCCCceeCCChH
Q 015081 30 SKQCPGCGHKLEAKPDWLGLPAGVKFDPTDQ 60 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~LPpGfRF~PTDe 60 (413)
...||.||-.... .-| -||.|.|-
T Consensus 18 k~~CP~CG~~T~~-----~hP--arfSp~Dk 41 (60)
T 2apo_B 18 KEICPKCGEKTVI-----PKP--PKFSLEDR 41 (60)
T ss_dssp SSBCSSSCSBCBC-----CCC--CCCCTTCT
T ss_pred cccCcCCCCcCCC-----CCC--CCCCCCcc
Confidence 4568999877632 233 48999885
No 11
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=38.87 E-value=6.4 Score=38.75 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=5.2
Q ss_pred eeCCChHHHHHH
Q 015081 54 KFDPTDQELIDH 65 (413)
Q Consensus 54 RF~PTDeELV~y 65 (413)
||. +.++++.+
T Consensus 44 ~~~-~~~~al~~ 54 (314)
T 3tr9_A 44 PHL-DLNSALRT 54 (314)
T ss_dssp BCC-SHHHHHHH
T ss_pred ccC-CHHHHHHH
Confidence 443 34555554
No 12
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=38.67 E-value=14 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=22.9
Q ss_pred cCCCCCCCCCccccCC---CCCCCCCCCceeCCC
Q 015081 28 CGSKQCPGCGHKLEAK---PDWLGLPAGVKFDPT 58 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~---~~~~~LPpGfRF~PT 58 (413)
.+...||+||...--+ ..--.+|+|+.|.|.
T Consensus 46 ~g~~~CpYCg~~y~~~~~~~~~et~p~~c~~~~~ 79 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSLSYNQTNPTGCLYNPK 79 (87)
T ss_dssp CCEECCTTTCCEEECCTTSCTTCCCSSCCBCCCS
T ss_pred CCeEECCCCCCEeEcCCCCCcCCcCCCCcEecCc
Confidence 4778999999877522 223468999999875
No 13
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=36.15 E-value=12 Score=35.14 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=3.5
Q ss_pred ceeeecC
Q 015081 381 TSIILDE 387 (413)
Q Consensus 381 ~s~~l~~ 387 (413)
|++.+|.
T Consensus 99 Gtif~d~ 105 (235)
T 1qwz_A 99 GSIFMDF 105 (235)
T ss_dssp CCEEECT
T ss_pred Cceeccc
Confidence 4555544
No 14
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=35.20 E-value=8 Score=39.72 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=5.0
Q ss_pred CcceeeecC
Q 015081 379 HHTSIILDE 387 (413)
Q Consensus 379 ~~~s~~l~~ 387 (413)
..+.||+|-
T Consensus 104 ~~g~iIId~ 112 (480)
T 2zyd_A 104 DKGDIIIDG 112 (480)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEC
Confidence 345566665
No 15
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=34.09 E-value=8.5 Score=33.79 Aligned_cols=9 Identities=22% Similarity=0.243 Sum_probs=4.9
Q ss_pred CCCCccccc
Q 015081 365 PSHPISTII 373 (413)
Q Consensus 365 ~~~p~~~~~ 373 (413)
-.||+...|
T Consensus 49 SeHPla~AI 57 (156)
T 1svj_A 49 DETPEGRSI 57 (156)
T ss_dssp CCSHHHHHH
T ss_pred CCCHHHHHH
Confidence 356665544
No 16
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=34.05 E-value=8.6 Score=34.25 Aligned_cols=6 Identities=50% Similarity=1.038 Sum_probs=0.0
Q ss_pred CCCCCC
Q 015081 319 QRPHHH 324 (413)
Q Consensus 319 ~~~~~~ 324 (413)
||||||
T Consensus 4 ~~~~~~ 9 (214)
T 2l4h_A 4 HHHHHH 9 (214)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 17
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Probab=32.50 E-value=9.4 Score=35.32 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=7.5
Q ss_pred CChHHHHHHHH
Q 015081 57 PTDQELIDHLE 67 (413)
Q Consensus 57 PTDeELV~yL~ 67 (413)
|.+-||.+||.
T Consensus 34 ~~en~LFd~Ln 44 (199)
T 3u61_A 34 KAENEFFEIIG 44 (199)
T ss_dssp CHHHHHHHHHH
T ss_pred CchhHHHHHHH
Confidence 55677777764
No 18
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=31.55 E-value=10 Score=41.82 Aligned_cols=15 Identities=7% Similarity=0.383 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHhcC
Q 015081 59 DQELIDHLEAKVEAK 73 (413)
Q Consensus 59 DeELV~yL~~Ki~g~ 73 (413)
-.|||+-+++.|.+.
T Consensus 467 l~Evi~a~~~ll~~~ 481 (803)
T 3qx3_A 467 AREIVNNVRRMLDGL 481 (803)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCC
Confidence 356777666555544
No 19
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=31.38 E-value=18 Score=35.21 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCCCCCCCCccccCCC--CCCC-CC-CCceeCCChHHHHHHHH
Q 015081 29 GSKQCPGCGHKLEAKP--DWLG-LP-AGVKFDPTDQELIDHLE 67 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~--~~~~-LP-pGfRF~PTDeELV~yL~ 67 (413)
-|.+|++|+..|-.+. .|.. .| .|++|.++-.|.|..|.
T Consensus 23 l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~ 65 (304)
T 2f9y_B 23 VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLL 65 (304)
T ss_dssp CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHS
T ss_pred HHHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHC
Confidence 4789999999998773 5533 45 89999999999999873
No 20
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=31.38 E-value=10 Score=37.37 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=4.2
Q ss_pred eCCChHHH
Q 015081 55 FDPTDQEL 62 (413)
Q Consensus 55 F~PTDeEL 62 (413)
.-+.+|||
T Consensus 83 ~V~~~eE~ 90 (314)
T 3tr9_A 83 SPSTQIEL 90 (314)
T ss_dssp CHHHHHHH
T ss_pred CCCHHHHH
Confidence 44456664
No 21
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=31.33 E-value=14 Score=33.34 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=4.1
Q ss_pred cccccccc
Q 015081 282 FSFVPFRK 289 (413)
Q Consensus 282 ~s~~p~~~ 289 (413)
|.|+-|.+
T Consensus 153 ~~f~~y~r 160 (178)
T 3tq8_A 153 FQFLELRR 160 (178)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55555533
No 22
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=30.94 E-value=10 Score=41.32 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=3.1
Q ss_pred ccccccc
Q 015081 286 PFRKSFD 292 (413)
Q Consensus 286 p~~~~~~ 292 (413)
|+.|-|.
T Consensus 703 ~~akiy~ 709 (724)
T 3rce_A 703 TRAKIYR 709 (724)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 4444443
No 23
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=29.16 E-value=12 Score=32.29 Aligned_cols=6 Identities=33% Similarity=0.827 Sum_probs=3.7
Q ss_pred CCeecC
Q 015081 408 NPVVFI 413 (413)
Q Consensus 408 ~~~~~~ 413 (413)
+++|||
T Consensus 88 ~k~vFI 93 (139)
T 2l72_A 88 NKIQFV 93 (139)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 566665
No 24
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=28.76 E-value=12 Score=39.06 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=8.1
Q ss_pred cceeeecCCCCcceeeecc
Q 015081 380 HTSIILDEDSYHVSRIMLQ 398 (413)
Q Consensus 380 ~~s~~l~~~~~~~~~~~~~ 398 (413)
|+.|+.--.-.|.-.++|+
T Consensus 55 QG~IL~g~~k~~~~~lFf~ 73 (493)
T 4g2c_A 55 QPNILKAHVRDRLTVLFLG 73 (493)
T ss_dssp CTTSSSCCCCSEEEEEEEE
T ss_pred chhhhcCCCCceeEEEEEE
Confidence 3333333333445555554
No 25
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=27.79 E-value=19 Score=33.78 Aligned_cols=6 Identities=0% Similarity=-0.014 Sum_probs=2.8
Q ss_pred CCCcce
Q 015081 388 DSYHVS 393 (413)
Q Consensus 388 ~~~~~~ 393 (413)
|.|++.
T Consensus 83 n~~yL~ 88 (235)
T 1qwz_A 83 NHDYLN 88 (235)
T ss_dssp SSTTTS
T ss_pred hHHHHh
Confidence 444443
No 26
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=27.61 E-value=22 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=10.7
Q ss_pred ccccccCCCCcCCCCCCCCCCCcccC
Q 015081 291 FDEVGIGEASTAREAPAHGTCEDIRD 316 (413)
Q Consensus 291 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (413)
|++++ .++..+.+++++++..+.|+
T Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 185 (189)
T 3uno_A 161 AREVD-VAPAASGAPHAAGGRLGSHH 185 (189)
T ss_dssp HHHSC-CCCCCCCCCCCTTCCCC---
T ss_pred HHHhc-CCCCCCCCCccccccccccc
Confidence 45554 33333334455666555443
No 27
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=27.48 E-value=13 Score=35.77 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 015081 316 DHHQRPHHHLA 326 (413)
Q Consensus 316 ~~~~~~~~~~~ 326 (413)
|||||||||..
T Consensus 3 ~~~~~~~~~~~ 13 (262)
T 1d1d_A 3 HHHHHHHHHSS 13 (262)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 33334444433
No 28
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=27.36 E-value=13 Score=33.38 Aligned_cols=8 Identities=0% Similarity=-0.126 Sum_probs=4.3
Q ss_pred CCEEEEEE
Q 015081 201 GELVVSKI 208 (413)
Q Consensus 201 ~e~VLCKI 208 (413)
+.++++||
T Consensus 80 ~~v~f~kv 87 (178)
T 3ga4_A 80 SLNLFFTV 87 (178)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEE
Confidence 34555555
No 29
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=25.59 E-value=15 Score=37.22 Aligned_cols=47 Identities=4% Similarity=0.056 Sum_probs=24.2
Q ss_pred cccccCCCCCCcccccC-CCCCCccee-------eecCCCCcceeeecccccccc
Q 015081 358 TAFHISRPSHPISTIIS-PSPLHHTSI-------ILDEDSYHVSRIMLQNESFQV 404 (413)
Q Consensus 358 ~~~~~~~~~~p~~~~~s-p~~~~~~s~-------~l~~~~~~~~~~~~~~~~~~~ 404 (413)
-+++|.|=.-++.+.|- .|..-..-+ .|=++.++|.+..-+++.|..
T Consensus 34 ~~i~V~SE~g~Lr~VllhrPg~e~~~ltp~~~~~lLfddi~~~~~A~~EHd~f~~ 88 (433)
T 4e4j_A 34 NGINVYSEIGELKEVLVHTPGDEIRYTAPSRLEELLFSAVLKADTAIEEHKGFVK 88 (433)
T ss_dssp -CCBBCCSSSCEEEEEECCCCGGGGCCCGGGTTTTTCCCCCCHHHHHHHHHHHHH
T ss_pred CcceEECCcccccEEEECCCcHHHHhcCccchHHhccccCcCHHHHHHHHHHHHH
Confidence 34666655555554432 222211111 344578888886666677743
No 30
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=25.55 E-value=15 Score=36.96 Aligned_cols=6 Identities=50% Similarity=0.844 Sum_probs=1.9
Q ss_pred cccccc
Q 015081 287 FRKSFD 292 (413)
Q Consensus 287 ~~~~~~ 292 (413)
||+.|-
T Consensus 477 FR~aFk 482 (510)
T 4grv_A 477 FRQVFL 482 (510)
T ss_dssp CCCC--
T ss_pred HHHHHH
Confidence 444444
No 31
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=24.52 E-value=42 Score=30.31 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=22.5
Q ss_pred cEEeecC-CCceEEeCCEEeeeeEEEee
Q 015081 144 TRWHKTG-KTRPVMVNGKQKGCKKILVL 170 (413)
Q Consensus 144 G~Wk~tG-~~k~I~~~G~~VG~KktL~F 170 (413)
--|.+|| +-+.|..+|++||+...|.+
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 4699999 67788899999999877654
No 32
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.48 E-value=21 Score=28.41 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=27.2
Q ss_pred CcchhhhhhhhcccccCCCCCCCCCccccCC--CCCCCCCCCceeC
Q 015081 13 SSSDLIDAKLEEHQLCGSKQCPGCGHKLEAK--PDWLGLPAGVKFD 56 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LPpGfRF~ 56 (413)
..+.|=.+|+.+ -....|+.||...|.. ...-++|||-+|.
T Consensus 13 ~~~~~g~~~~~e---m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fe 55 (81)
T 2kn9_A 13 EAQTQGPGSMND---YKLFRCIQCGFEYDEALGWPEDGIAAGTRWD 55 (81)
T ss_dssp CCCCCCCCCSSC---CCEEEETTTCCEEETTTCBTTTTBCTTCCTT
T ss_pred eecccCCcCCCC---cceEEeCCCCEEEcCCcCCcccCcCCCCChh
Confidence 344444455554 2468999999988744 3456789998764
No 33
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.33 E-value=33 Score=25.84 Aligned_cols=23 Identities=39% Similarity=0.946 Sum_probs=14.2
Q ss_pred CCCCCCCccccCCCCCCCCCCCceeCCChH
Q 015081 31 KQCPGCGHKLEAKPDWLGLPAGVKFDPTDQ 60 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~LPpGfRF~PTDe 60 (413)
..||.||-.+.. .-| -||.|.|-
T Consensus 18 ~~CP~CG~~t~~-----ahP--arfSP~Dk 40 (60)
T 2aus_D 18 ETCPVCGEKTKV-----AHP--PRFSPEDP 40 (60)
T ss_dssp SBCTTTCSBCEE-----SSC--CCCCSCCT
T ss_pred ccCcCCCCccCC-----CCC--CCCCCCCc
Confidence 456777766532 233 38999986
No 34
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.14 E-value=27 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.1
Q ss_pred ccCCCCCCCCCcccc
Q 015081 27 LCGSKQCPGCGHKLE 41 (413)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (413)
....-.||+||+.|-
T Consensus 35 ~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 35 AKEVIRCRECGHRVM 49 (63)
T ss_dssp SSSCCCCSSSCCCCC
T ss_pred CCCceECCCCCcEEE
Confidence 345689999999994
Done!