BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015082
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 153/390 (39%), Gaps = 101/390 (25%)
Query: 15 EESRKCTKRIFMDQSRM---------TGTFTEENLQFQKKILERSGLGDSTYLPEAVLNI 65
EE+ + +R D ++ TG T +Q + LE G D + E
Sbjct: 27 EETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYE----- 81
Query: 66 PPNPSMKEARKEAEAVMFGAID--ELFAKTSVKPKDIGILI-VNCSLFNPTPSLSAMVIN 122
+EA+ AV+ A+D EL A DI ++I V+C+ F PSL+A +IN
Sbjct: 82 ------REAKSRVPAVIQRALDDAELLAT------DIDVIIYVSCTGFM-MPSLTAWLIN 128
Query: 123 HYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGN-DRS 181
+ +GC+AG +I+ A++ +P + AL+++ E +L + +
Sbjct: 129 EMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVG 188
Query: 182 KLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVG 241
L+ N LF G AA ++ R G G
Sbjct: 189 SLLCNGLFGDGIAAAVVRGR------------------------------------GGTG 212
Query: 242 VTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLF-------FATLVGKKLFKMKIKPYI 294
V L +N G ++P +E + F L+ K++ ++P
Sbjct: 213 VRLERN----------------GSYLIPKTEDWIMYDVKATGFHFLLDKRV-PATMEPLA 255
Query: 295 PDFK-LAFEH---------FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSS 344
P K LA EH + +HAGG +LD+L L++ SR TL +GN +S+
Sbjct: 256 PALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASA 315
Query: 345 SLWYELAYSEAKGRIKKGDRTWQIAFGSGF 374
+ L +G +++G R FG G
Sbjct: 316 VVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 96 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQ 155
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A N ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 156 VHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 215
HP ALV+ +E ++N F +D + +V + LF G AA+++
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIG---------------- 234
Query: 216 VRTHKGADDNCFACVTQEEDSEGKVGVTLS-KNLMAVAGDALKTNITTLGPLVLPMSEQL 274
A QE+ GKV V S L+ D + + G + +SE L
Sbjct: 235 ------------ASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNG-ITCELSENL 281
Query: 275 LFF-----ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 329
+ A +V + L+ ++ I D L + IH GG ++++ ++L +S
Sbjct: 282 PGYIFSGVAPVVTEMLWDNGLQ--ISDIDL----WAIHPGGPKIIEQSVRSLGISAELAA 335
Query: 330 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-QIAFGSGFKCNSAVWKALR 385
S L RFGN S SL + L + K T AFG G ++ +R
Sbjct: 336 QSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 96 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQ 155
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A N ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 156 VHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 215
HP ALV+ +E ++N F +D + +V + LF G AA+++
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIG---------------- 234
Query: 216 VRTHKGADDNCFACVTQEEDSEGKVGVTLS-KNLMAVAGDALKTNITTLGPLVLPMSEQL 274
A QE+ GKV V S L+ D + + G + +SE L
Sbjct: 235 ------------ASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNG-ITCELSENL 281
Query: 275 LFF-----ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 329
+ A +V + L+ ++ I D L + IH GG ++++ ++L +S
Sbjct: 282 PGYIFSGVAPVVTEMLWDNGLQ--ISDIDL----WAIHPGGPKIIEQSVRSLGISAELAA 335
Query: 330 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-QIAFGSGFKCNSAVWKALR 385
S L RFGN S SL + L + K T AFG G ++ +R
Sbjct: 336 QSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 76/389 (19%)
Query: 30 RMTGTFTEENLQFQ---KKILERSGLGDS-TYLPEAVLNIPPN-------PSMKEARKEA 78
R+TG E N + + K+I ERS + YL E +L P+ PS+ +AR+
Sbjct: 64 RITGN--EHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSL-DARQAM 120
Query: 79 EAVMFGAIDELFAKTSVKP---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIISYN 134
A+ + + A+ +++ GI ++ CS TP L KL G S
Sbjct: 121 LAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVK 178
Query: 135 LGGM---GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLF 189
G+ GC AG + +A +L + + + LVI E + + ++ LV LF
Sbjct: 179 RVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALF 238
Query: 190 RMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVG-----VT 243
G +A+++ ++ ++ + +V T +T +SEG +G V
Sbjct: 239 GDGASALIVGADPIPQVEKACFEIVWTAQT-------------VVPNSEGAIGGKVREVG 285
Query: 244 LSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEH 303
L+ L D + NI M E F KLF
Sbjct: 286 LTFQLKGAVPDLISANIENC------MVEAFSQFKISDWNKLF----------------- 322
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 363
+ +H GGRA+LD +E L L + P+R + +GN SS+ + + L + K ++ G
Sbjct: 323 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGC 381
Query: 364 RTWQ--------IAFGSGFKCNSAVWKAL 384
T FG G + V K++
Sbjct: 382 STTGEGLEMGVLFGFGPGLTIETVVLKSV 410
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 76/389 (19%)
Query: 30 RMTGTFTEENLQFQ---KKILERSGLGDS-TYLPEAVLNIPPN-------PSMKEARKEA 78
R+TG E N + + K+I ERS + YL E +L P+ PS+ +AR+
Sbjct: 48 RITGN--EHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSL-DARQAM 104
Query: 79 EAVMFGAIDELFAKTSVKP---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIISYN 134
A+ + + A+ +++ GI ++ CS TP L KL G S
Sbjct: 105 LAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVK 162
Query: 135 LGGM---GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLF 189
G+ GC AG + +A +L + + + LVI E + + ++ LV LF
Sbjct: 163 RVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALF 222
Query: 190 RMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVG-----VT 243
G +A+++ ++ ++ + +V T +T +SEG +G V
Sbjct: 223 GDGASALIVGADPIPQVEKACFEIVWTAQT-------------VVPNSEGAIGGKVREVG 269
Query: 244 LSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEH 303
L+ L D + NI M E F KLF
Sbjct: 270 LTFQLKGAVPDLISANIENC------MVEAFSQFKISDWNKLF----------------- 306
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 363
+ +H GGRA+LD +E L L + P+R + +GN SS+ + + L + K ++ G
Sbjct: 307 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGC 365
Query: 364 RTWQ--------IAFGSGFKCNSAVWKAL 384
T FG G + V K++
Sbjct: 366 STTGEGLEMGVLFGFGPGLTIETVVLKSV 394
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 133/342 (38%), Gaps = 63/342 (18%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKDIGILIVN 106
YL E +L PN PS+ +AR+ A+ + + A ++K PK ++
Sbjct: 75 YLTEEILKENPNVCEYMAPSL-DARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHLIV 133
Query: 107 CSLFNPT-PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
CS P P + LR + + GC AG + LA +L + + + LV+
Sbjct: 134 CSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARVLVV 193
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 194 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 251
Query: 223 DDNCFACVTQEEDSEGKVG-----VTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
DSEG + L+ +L D + NIT
Sbjct: 252 -----------PDSEGAIDGHLREAGLTFHLKGAVPDIVSKNIT---------------- 284
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYR 337
K L + I D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 285 -----KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSE 337
Query: 338 FGNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
+GN SS+ + + L K + G +T W + FG G
Sbjct: 338 YGNMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 136/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + GC AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 57/373 (15%)
Query: 35 FTEENLQFQKKILERSGLGDS-TYLPEAVLNIPPN------PSMKEARKEAEAVMFGAID 87
T+ +FQ+ I ER+ + + YL E +L PN PS+ +AR++ +
Sbjct: 50 MTDLKKKFQR-ICERTQIKNRHMYLTEEILKENPNMCAYKAPSL-DAREDMMIREVPRVG 107
Query: 88 ELFAKTSVKP-----KDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSA 142
+ A ++K I LI + P + +I L ++ Y + GC A
Sbjct: 108 KEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFA 167
Query: 143 GLISIDLANNLLQVHPNSYALVISMEN--ITLNWYFGNDRSKLVSNCLFRMGGAAILL-S 199
G + LA +L + + ++ L++ EN +T D LV LF G AAI++ S
Sbjct: 168 GGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGS 227
Query: 200 NRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTN 259
+ + + +V T + + +E VG+T N D + N
Sbjct: 228 DPVPEVENPLFEIVSTDQQLVPNSHGAIGGLLRE------VGLTFYLN--KSVPDIISQN 279
Query: 260 ITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEK 319
I + K + I Y F +A H GGRA+LD++E+
Sbjct: 280 INDA-----------------LSKAFDPLGISDYNSIFWIA------HPGGRAILDQVEE 316
Query: 320 NLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRT------WQI--AFG 371
+ L M+ +R L +GN SS+ +++ + K ++ G +T W + FG
Sbjct: 317 KVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKS-LEAGLKTTGEGLDWGVLFGFG 375
Query: 372 SGFKCNSAVWKAL 384
G + V +++
Sbjct: 376 PGLTIETVVLRSM 388
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG + V L + AG G +V
Sbjct: 248 -----------PDSEGAIDVHLRE-----AGLTFHLLKDVPG---------------IVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 114/298 (38%), Gaps = 36/298 (12%)
Query: 99 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHP 158
DI L+V + P + ++ LR ++ L GC AG ++ LA +L +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 159 NSYALVISMENITLNWYFGNDRS---KLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 215
+ LV++ E +TL ++ G D L+ LF G AA+++ D R + +V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 216 VRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLL 275
+T D+ E +G +G + + + GD ++ + + L
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 315
Query: 276 FFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 335
LF + +H G ++D+++ L L + SR L
Sbjct: 316 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 358
Query: 336 YRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-----QIAFGSGFKCNSAVWKALRSIN 388
+GN S +++ + L + + W +AFG G ++ + A +N
Sbjct: 359 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHVN 416
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG + + L + AG G +V
Sbjct: 248 -----------PDSEGAIDLHLRE-----AGLTFHLLKDVPG---------------IVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 246
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 247 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 275
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 276 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 333
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 334 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG + L + AG G +V
Sbjct: 248 -----------PDSEGAIDAHLRE-----AGLTFHLLKDVPG---------------IVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 47/247 (19%)
Query: 139 GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRS---KLVSNCLFRMGGAA 195
GC AG + A +L + + + LV+ E IT+ + G LV LF G AA
Sbjct: 750 GCYAGGTVLRTAKDLAENNAGARVLVVCSE-ITVVTFRGPSEDALDSLVGQALFGDGSAA 808
Query: 196 ILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGD 254
+++ S+ R ++LV +T A +E VG+T
Sbjct: 809 VIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLRE------VGLTFH--------- 853
Query: 255 ALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPY-IPDFKLAFEHFCIHAGGRAV 313
L N+ TL +SE + +K P I D+ F + H GG A+
Sbjct: 854 -LWPNVPTL------ISENV--------EKCLTQAFDPLGISDWNSLF--WIAHPGGPAI 896
Query: 314 LDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRT-------W 366
LD +E L L +E +R L +GN SS+ + + L E + + KG+R W
Sbjct: 897 LDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL--DEMRKKSLKGERATTGEGLDW 954
Query: 367 QIAFGSG 373
+ FG G
Sbjct: 955 GVLFGFG 961
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG + L + AG G +V
Sbjct: 248 -----------PDSEGAIDFHLRE-----AGLTFHLLKDVPG---------------IVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 45/293 (15%)
Query: 114 PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLN 173
P ++ L ++ Y L G +AG + LA +L + + S L++ E IT
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE-ITAI 201
Query: 174 WYFG---NDRSKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFAC 229
+ G N LV+ LF G AA+++ S R + +V T +T +
Sbjct: 202 LFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMKL 261
Query: 230 VTQEEDSEGKVGVTLSKNL-MAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKM 288
+E G + L +++ + VA + L PL
Sbjct: 262 HLRE----GGLTFQLHRDVPLMVAKNIENAAEKALSPL---------------------- 295
Query: 289 KIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWY 348
I D+ F + +H GGRA+LD++E+ L L + + SR L +GN S+ + +
Sbjct: 296 ----GITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLF 349
Query: 349 EL------AYSEAKGRIKKG-DRTWQIAFGSGFKCNSAVWKALRSINSAKEKN 394
+ + +E K +G D FG G + V +++R + N
Sbjct: 350 IIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTAAVANGN 402
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 32/263 (12%)
Query: 114 PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLN 173
P ++ +I+ L ++ +L MGC AGL S+ A +L + P + LV+ E +L+
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 174 WYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQE 233
+ + ++V++ +F G AA ++ Y ++ ++ +N A V
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTEN--AMVWDL 248
Query: 234 EDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPY 293
E +G L ++ V G ++ F TL+ K +
Sbjct: 249 EKEGWNLG--LDASIPIVIGSGIEA-----------------FVDTLLDKAKLQTSTAIS 289
Query: 294 IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYS 353
D + F IH GG+++L +E +L + + + + +GN SS+S+ + + ++
Sbjct: 290 AKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHA 344
Query: 354 EAKGRIKKGDRTWQI--AFGSGF 374
R K T+ I AFG G
Sbjct: 345 ----RKSKSLPTYSISLAFGPGL 363
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 112/293 (38%), Gaps = 36/293 (12%)
Query: 99 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHP 158
DI L+V + P + ++ LR ++ L GC AG ++ LA +L +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 159 NSYALVISMENITLNWYFGNDRS---KLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 215
+ LV++ E +TL ++ G D L+ LF G AA+++ D R + +V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 216 VRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLL 275
+T D+ E +G +G + + + GD ++ + + L
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 285
Query: 276 FFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 335
LF + +H G ++D+++ L L + SR L
Sbjct: 286 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 328
Query: 336 YRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-----QIAFGSGFKCNSAVWKA 383
+GN S +++ + L + + W +AFG G ++ + A
Sbjct: 329 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 69 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 127
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 128 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 187
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 188 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 245
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 246 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 274
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 275 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 332
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
G SS+ + + L K + G +T W + FG G
Sbjct: 333 GAMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 372
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 246
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 247 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 275
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + GG A+LD++E+ L L M +R L +
Sbjct: 276 KNITKALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEY 333
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 334 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 57 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 105
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 106 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 165
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 166 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 222
E + + +D LV L G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 223 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 282
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 283 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 338
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 339 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 373
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 280 LVGKKLFKMKIKP----YIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 335
L+ K + K+ +P + P + F + +H GG A+LD++E L LS M+ SR L
Sbjct: 287 LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVL 344
Query: 336 YRFGNTSSSSLWYELAY----SEAKGRIKKGDR-TWQ--IAFGSGFKCNSAVWKALRSIN 388
+GN SS+S+ + L SE G+ W I FG G + + LRSIN
Sbjct: 345 ASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIGFGPGLTVETLL---LRSIN 401
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWY------ELAYSEAKG 357
+ +H GG A+LD++E L+L + SR L +GN SS+S+ + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 358 RIKKGDR-TWQIAFGSGFKCNSAVWKAL 384
+G + I FG G + + +AL
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 307 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKKG 362
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 363 DR-TWQIAFGSG 373
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 307 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKKG 362
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 363 DR-TWQIAFGSG 373
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 279 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 328
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 229 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 285
Query: 329 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 286 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 279 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 328
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 329 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 279 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 328
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 329 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 134/356 (37%), Gaps = 94/356 (26%)
Query: 52 LGDSTYLPEAVLN--------------IPPNPSMKEARKEAEAVMF----GAIDELFAKT 93
+G YLP+ VL I +KE R E + A E +
Sbjct: 6 IGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREA 65
Query: 94 SVKPKDIGILIVNCSLFNPT---PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLA 150
++ P+++ ++I+ + P PS + +V K +G + ++++ CS + ++D+A
Sbjct: 66 NLSPEELDLIIL--ATLTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACSGFIYALDIA 121
Query: 151 NNLLQVHPNSYALVISMENIT--LNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRS 208
++ ++ LVI E ++ ++W DRS V LF G A++
Sbjct: 122 DSFIKSGKAKNVLVIGAEKLSEAVDW---EDRSTCV---LFGDGAGAVV----------- 164
Query: 209 KYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVL 268
VT+ ED D L T + G L
Sbjct: 165 ---------------------VTRSEDK----------------SDILATRMYAEGSLEE 187
Query: 269 PMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCI----------HAGGRAVLDELE 318
+ + + G++LFK+ ++ + E + H +++ L
Sbjct: 188 LLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALA 247
Query: 319 KNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGF 374
+ L + E + + ++GNTS++S+ L + +G++K+GD A G G
Sbjct: 248 EKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 253 GDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRA 312
G ++K + G V + +++ ATL + + K + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATL--EAIEKAGLTP--EDIRL----FVPHQANLR 251
Query: 313 VLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGS 372
++D + L L W E + + R+GNTS++S+ L + GRI++GD ++FG+
Sbjct: 252 IIDAARERLGLP-W--ERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 373 GFKCNSAV 380
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRI 359
+ H G A++D +E LQLS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 360 KKGDR-TWQI--AFGSGFKCNSAVWKAL 384
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRI 359
+ H G A++D +E LQLS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 360 KKGDR-TWQI--AFGSGFKCNSAVWKAL 384
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 363
F +H R +LD L K +++ + H P M GNT SS+L L A G + +G
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLME--HCGNTVSSTLPLALETMRANGTLARGM 345
Query: 364 RTWQIAFGSGF 374
R + FG G+
Sbjct: 346 RLMLLGFGVGY 356
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 91 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 144
A+ ++ +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 75 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 133
Query: 145 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 202
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 134 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 193
Query: 203 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 262
+ ++ LV +KG GVT S A + N
Sbjct: 194 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 225
Query: 263 LGPL--VLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 320
G L ++ + LL + +K F + K + + F IH R K+
Sbjct: 226 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 284
Query: 321 LQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNS 378
+ ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C+
Sbjct: 285 -----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 339
Query: 379 A--VW 381
A VW
Sbjct: 340 AEVVW 344
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 91 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 144
A+ ++ +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 76 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 134
Query: 145 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 202
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 135 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 194
Query: 203 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 262
+ ++ LV +KG GVT S A + N
Sbjct: 195 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 226
Query: 263 LGPL--VLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 320
G L ++ + LL + +K F + K + + F IH R K+
Sbjct: 227 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 285
Query: 321 LQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNS 378
+ ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C+
Sbjct: 286 -----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 340
Query: 379 A--VW 381
A VW
Sbjct: 341 AEVVW 345
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 119/310 (38%), Gaps = 45/310 (14%)
Query: 74 ARKEAEAVM-FGAIDELFAKTSVKPKDIGILIV-NCSLFNPTPSLSAMVINHYKLRGNII 131
A E A M F A + P+DI ++IV S + PS + V + + I
Sbjct: 53 AEDETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAI 111
Query: 132 SYNLGGMGCSAGLI-SIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFR 190
S++L G + ++ +A+ ++ ALVI ++ DRS +V LF
Sbjct: 112 SFDLAA--AXTGFVYALSVADQFIRAGKVKKALVIG-SDLNSRKLDETDRSTVV---LFG 165
Query: 191 MGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMA 250
G A++L S+ + + H AD N + Q E G+ S +
Sbjct: 166 DGAGAVIL-------EASEQEGIISTHLHASADKNNALVLAQPER-----GIEKSGYIEM 213
Query: 251 VAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGG 310
+ K + L +V TL+ L K + +P H
Sbjct: 214 QGNETFKLAVRELSNVVEE---------TLLANNLDKKDLDWLVP-----------HQAN 253
Query: 311 RAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAF 370
++ K L++ M +TL ++ N S++++ L + GRI++G AF
Sbjct: 254 LRIITATAKKLEMD---MSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAF 310
Query: 371 GSGFKCNSAV 380
G G+ SA+
Sbjct: 311 GGGWTWGSAL 320
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 56/311 (18%)
Query: 96 KPKD-IGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLL 154
+PK I LIV C P + L ++ + +GC AG + LA ++
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 155 QVHPNSYALVISMENITLNWYFGNDRSKL---VSNCLFRMGGAAILL-SNRFSDRRRSKY 210
+ + + L++ E +T + G + L + LF G AA+++ ++ R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIF 233
Query: 211 RLVHTVRT-----HKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNIT-TLG 264
LV T +T H + + E + L K + + + +KT ++
Sbjct: 234 ELVSTAQTIVPESHGAIEGHLL---------ESGLSFHLYKTVPTLISNNIKTCLSDAFT 284
Query: 265 PLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLS 324
PL + L + A H GG A+LD++ + L
Sbjct: 285 PLNISDWNSLFWIA----------------------------HPGGPAILDQVTAKVGLE 316
Query: 325 DWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRIKKGDR-TWQI--AFGSGFKCN 377
++ +R L +GN SS+++++ + K G+ G+ W + FG G
Sbjct: 317 KEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGPGITVE 376
Query: 378 SAVWKALRSIN 388
+ V +++ I+
Sbjct: 377 TVVLRSVPVIS 387
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 53/307 (17%)
Query: 91 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 144
A+ ++ IGI L+VN S+ PS +++V + + + +++++ C A +
Sbjct: 69 ARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFI 127
Query: 145 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 202
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 128 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 187
Query: 203 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 262
+ ++ LV +KG GVT S A + N
Sbjct: 188 AAMVMARTELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 219
Query: 263 LGPL--VLPMSEQLLFFATLVGKKLF--KMKIKPYIPDFKLAFEHFCIHAGGRAVLDELE 318
G L ++ + LL + +K F ++ + D + F IH R
Sbjct: 220 RGNLDRMVTDTRLLLIEGIKLAQKTFLAARQVLGWAVD---ELDQFVIHQVSRPHTAAFV 276
Query: 319 KNLQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKC 376
K+ + ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C
Sbjct: 277 KS-----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 331
Query: 377 NSA--VW 381
+ A VW
Sbjct: 332 SMAEVVW 338
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 279 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 328
T G ++FK+ + +I D LA + H ++ K L S
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAANNNDRSQLDWLVPHQANLRIISATAKKLGXS---X 262
Query: 329 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 279 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 328
T G ++FK+ + +I D LA + H ++ K L S
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGXS---X 262
Query: 329 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 307 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRIKKG 362
H GG A+LD++ + L ++ +R L +GN SS+++++ + K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 363 DR-TWQI--AFGSGFKCNSAVWKALRSIN 388
+ W + FG G + V +++ I+
Sbjct: 359 EGLEWGVLFGFGPGITVETVVLRSVPVIS 387
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 282 GKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME----PSRMTLYR 337
GK++F+ + +P + A E + G + NL++ D ++ P + + R
Sbjct: 222 GKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSR 281
Query: 338 ----FGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFK 375
GNTSS+S+ L G + G I FG+G
Sbjct: 282 DAEDTGNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLS 323
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 47/288 (16%)
Query: 101 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 160
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLSA-GCAGFGYALGAAADMIRGGGAA 142
Query: 161 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 217
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVGE-------TPFQGIGP-- 186
Query: 218 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 187 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 233
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 334
VG++ M PD + F H + + L KNLQL P +
Sbjct: 234 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 283
Query: 335 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 284 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 47/288 (16%)
Query: 101 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 160
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 105 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 162
Query: 161 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 217
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 163 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVGE-------TPFQGIGP-- 206
Query: 218 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 207 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 253
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 334
VG++ M PD + F H + + L KNLQL P +
Sbjct: 254 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 303
Query: 335 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 304 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 351
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 32/318 (10%)
Query: 73 EARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNC-SLFNPTPSLSAMVINHYKLRGNII 131
E + A+M A + + P+DI +L+VN S + PS + ++ LR +I
Sbjct: 69 EPEQAVSALMVPAARQAIEAAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGLR-HIP 127
Query: 132 SYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRM 191
++ CS L + +A + + LV+ E ++ +DR + +S L
Sbjct: 128 VLDIRAQ-CSGLLYGLQMARGQILAGLARHVLVVCGEVLSKRMDC-SDRGRNLSILLGDG 185
Query: 192 GGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVT-LSKNLMA 250
GA ++ + + RL GAD N F + + G T L +N++
Sbjct: 186 AGAVVVSAGESLEDGLLDLRL--------GADGNYFDLLMTA--APGSASPTFLDENVLR 235
Query: 251 VAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGG 310
G + P+ S+ L+ A G+ L ++ + D +H H
Sbjct: 236 EGGGEF---LMRGRPMFEHASQTLVRIA---GEMLAAHELT--LDDI----DHVICHQPN 283
Query: 311 RAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAF 370
+LD +++ L + +T+ R GN +S+S LA I+ G R + +
Sbjct: 284 LRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQPGQRVLVLTY 338
Query: 371 GSGFKCNSAVWKALRSIN 388
GSG +A+++ +N
Sbjct: 339 GSGATWGAALYRKPEEVN 356
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 101 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 160
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 161 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 217
LV+ E + T++ Y NC +F G AA+++ + ++ +
Sbjct: 164 TMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVGE-------TPFQGIGP-- 207
Query: 218 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 208 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 254
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 334
VG++ M PD + F H + + L KNLQL P +
Sbjct: 255 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 304
Query: 335 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 305 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 99 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHP 158
D+ LI + S P L + N LRG+ + C AG S+ LA +L+ P
Sbjct: 158 DVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLVAADP 217
Query: 159 NSYALVISMENITLNWYFGNDR-SKLVSNCLFRMGGAAILLSNR 201
+ LV+ E ++ + +D L+ LF A +++ R
Sbjct: 218 DRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGR 261
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 101 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 160
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 161 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 217
LV+ E + T++ Y NC +F G AA+++ + ++ +
Sbjct: 164 TMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVG-------ETPFQGIGP-- 207
Query: 218 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 208 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 254
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 334
VG++ M PD + F H + + L KNLQL P +
Sbjct: 255 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 304
Query: 335 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 305 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 301 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIK 360
+H H +LD +++ L + +T+ R GN +S+S LA I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 361 KGDRTWQIAFGSGFKCNSAVWKALRSIN 388
G R + +GSG +A+++ +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 301 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIK 360
+H H +LD +++ L + +T+ R GN +S+S LA I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 361 KGDRTWQIAFGSGFKCNSAVWKALRSIN 388
G R + +GSG +A+++ +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 101 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 160
G+++ + F TP + MV +G I+ ++L G ++ A ++++ +
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLSAGAAGFGY-ALGAAADMIRGGGAA 142
Query: 161 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 217
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVGE-------TPFQGIGP-- 186
Query: 218 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 277
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 187 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 233
Query: 278 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 334
VG++ M PD + F H + + L KNLQL P +
Sbjct: 234 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 283
Query: 335 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 284 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 69/383 (18%)
Query: 46 ILERSGLGDSTYLPEAVLNIPPNPSMKEARK----EAEAVMFGAIDELFAKTSVKPKDIG 101
I +RS +G+ + ++N P P++KE + + + A + A+ + P I
Sbjct: 77 IDQRSSIGNPDH---PLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQIT 133
Query: 102 ILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPN-- 159
++ + P V L + L G+GCS GL ++ A NL H
Sbjct: 134 HMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARG 193
Query: 160 --SYALVISMENITLNWYFGNDRSKL----------VSNCLFRMGGAAILLSNRFSDR-- 205
+ LV+++E T RS+L + LF +A++LSN +
Sbjct: 194 KPARILVLALEVSTTMV-----RSELESIDALQETRIGIALFSDCASAVILSNGIGEAPG 248
Query: 206 RRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGP 265
+ + Y L+ G ++ DSE +G + K ++ P
Sbjct: 249 KPAIYDLL-------GWENRVIP------DSEHDLGFDVDPM-------GWKVVLSPRVP 288
Query: 266 LVLPMSEQLLFFATL--VGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQL 323
++ S Q + L + +L KP DF + +H GG +L E + L
Sbjct: 289 VLAKASLQPTYADLLSSLQDQLPSSYQKPA--DFD-----WAMHPGGATILSGAESAMGL 341
Query: 324 SDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK--------GRIKKGDRTWQIAFGSGFK 375
+ HM S GN+SS++++ L K G++K + AFG G
Sbjct: 342 TPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK--EYVVGCAFGPGIN 399
Query: 376 CNSAVWKALRSINSAKEKNPWMD 398
+ K R +N+ +D
Sbjct: 400 VEMCMLK--RRMNAPARTTTGLD 420
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 333 MTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 382
+T+ GNTS++S+ L + GRIK+G G GF ++V +
Sbjct: 283 VTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 55 STYLPEAVLNIPPNPSMK--EARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNP 112
+TY P+ IP + K E KE+ + G S+ +D G L CS+F P
Sbjct: 51 TTYFPDYAEKIPGESTQKLSEVAKESSIYLIGG--------SIPEEDAGKLYNTCSVFGP 102
Query: 113 TPSLSAMVINHYKL 126
SL ++ H K+
Sbjct: 103 DGSL---LVKHRKI 113
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 322 QLSDWHMEPSRMTLYRFGNTS----SSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCN 377
+L D P T + +G T+ + + LA+ ++ GDR G+G+ C
Sbjct: 273 ELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCT 332
Query: 378 SAVWKALR 385
+AV + LR
Sbjct: 333 AAVVEILR 340
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 301 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTS----SSSLWYELAYSEAK 356
H I R EL L L P T + +G T+ + + LA+
Sbjct: 258 IAHAVIPVSRRGTGHELHDLLGL------PDERTSWAYGRTTGHVGAGDQYAGLAHLVEN 311
Query: 357 GRIKKGDRTWQIAFGSGFKCNSAVWKALR 385
++ GDR G+G+ C +AV + LR
Sbjct: 312 ALVQPGDRVLLFGGGAGYTCTAAVVEILR 340
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 69 PSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN---HYK 125
P K+ + + F A+ +T + D I++C +M +N HY
Sbjct: 163 PYGPSGIKQGDTLYFPAVG-FLPRTEFQYNDSNCPIIHCKYSKAENCRLSMGVNSKSHYI 221
Query: 126 LRGNIISYNLGGMGCSAGLISIDLANNLLQV 156
LR ++ YNL +G L I++A+N L +
Sbjct: 222 LRSGLLKYNL-SLGGDIILQFIEIADNRLTI 251
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 76 KEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN---HYKLRGNIIS 132
K+ + + F A+ +T + D I++C +M +N HY LR ++
Sbjct: 173 KQGDTLYFPAVG-FLPRTEFQYNDSNCPIIHCKYSKAENCRLSMGVNSKSHYILRSGLLK 231
Query: 133 YNLGGMGCSAGLISIDLANNLLQV 156
YNL +G L I++A+N L +
Sbjct: 232 YNL-SLGGDIILQFIEIADNRLTI 254
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLW 347
+ +H GG +L E + L+ HM S GN+SS++++
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIF 336
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 304 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLW 347
+ +H GG +L E + L+ HM S GN+SS++++
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIF 336
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 27 DQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKE------------- 73
D G F EE L +++E++ +G +T VLN P P +KE
Sbjct: 130 DPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVI 189
Query: 74 ARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCS 108
AR+ A+A F E +K +V LI+ C+
Sbjct: 190 ARQFAKAAFFSDHREDLSKVTVPS-----LILQCA 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,156,460
Number of Sequences: 62578
Number of extensions: 485322
Number of successful extensions: 1131
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 87
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)