Query 015083
Match_columns 413
No_of_seqs 496 out of 3831
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 4.7E-59 1.6E-63 453.2 30.4 296 110-407 5-307 (308)
2 1wf3_A GTP-binding protein; GT 100.0 1.5E-58 5E-63 448.0 27.9 292 113-408 5-298 (301)
3 1ega_A Protein (GTP-binding pr 100.0 1.5E-55 5.1E-60 427.2 28.0 295 112-409 5-300 (301)
4 1mky_A Probable GTP-binding pr 99.9 1.8E-24 6.2E-29 219.6 13.3 165 116-284 2-166 (439)
5 4dhe_A Probable GTP-binding pr 99.9 1.4E-23 4.8E-28 192.6 16.4 170 114-285 28-212 (223)
6 2dyk_A GTP-binding protein; GT 99.9 6.3E-24 2.1E-28 184.1 12.5 160 116-283 2-161 (161)
7 2aka_B Dynamin-1; fusion prote 99.9 1.3E-24 4.3E-29 208.9 7.5 206 113-323 24-292 (299)
8 2hjg_A GTP-binding protein ENG 99.9 9.1E-24 3.1E-28 214.3 11.3 223 116-361 4-233 (436)
9 2qpt_A EH domain-containing pr 99.9 8E-26 2.7E-30 235.1 -4.8 230 114-367 64-340 (550)
10 1jwy_B Dynamin A GTPase domain 99.9 1.2E-23 4.2E-28 203.7 9.6 205 114-323 23-298 (315)
11 3gee_A MNME, tRNA modification 99.9 1.2E-22 4.3E-27 207.4 17.1 161 115-283 233-397 (476)
12 3pqc_A Probable GTP-binding pr 99.9 4.1E-22 1.4E-26 178.1 18.0 166 113-283 21-193 (195)
13 2gj8_A MNME, tRNA modification 99.9 4.7E-23 1.6E-27 182.3 11.6 162 115-284 4-166 (172)
14 2qu8_A Putative nucleolar GTP- 99.9 4.9E-22 1.7E-26 183.6 19.0 171 112-283 26-204 (228)
15 1svi_A GTP-binding protein YSX 99.9 4.3E-22 1.5E-26 178.5 17.8 165 114-283 22-194 (195)
16 3iby_A Ferrous iron transport 99.9 8.9E-23 3E-27 192.6 13.6 159 116-281 2-164 (256)
17 2xtp_A GTPase IMAP family memb 99.9 7.4E-24 2.5E-28 199.9 5.6 184 113-299 20-224 (260)
18 3izq_1 HBS1P, elongation facto 99.9 9.5E-23 3.2E-27 214.3 12.9 206 113-338 165-436 (611)
19 1zj6_A ADP-ribosylation factor 99.9 1.3E-21 4.5E-26 174.6 18.2 164 114-290 15-184 (187)
20 2hjg_A GTP-binding protein ENG 99.9 6.9E-23 2.4E-27 207.8 11.0 169 114-284 174-349 (436)
21 3tr5_A RF-3, peptide chain rel 99.9 1.3E-23 4.3E-28 217.3 4.8 214 114-340 12-332 (528)
22 4dcu_A GTP-binding protein ENG 99.9 1.3E-22 4.3E-27 207.0 12.0 165 113-284 21-185 (456)
23 1f6b_A SAR1; gtpases, N-termin 99.9 1E-21 3.5E-26 177.7 16.2 157 113-282 23-197 (198)
24 3a1s_A Iron(II) transport prot 99.9 5E-22 1.7E-26 187.7 14.7 163 114-283 4-166 (258)
25 3i8s_A Ferrous iron transport 99.9 1.6E-22 5.3E-27 192.8 11.1 165 114-285 2-170 (274)
26 2wji_A Ferrous iron transport 99.9 2.5E-22 8.5E-27 176.0 11.3 162 115-283 3-164 (165)
27 2nzj_A GTP-binding protein REM 99.9 6E-22 2E-26 173.9 13.4 160 114-282 3-167 (175)
28 1wxq_A GTP-binding protein; st 99.9 2.3E-23 7.8E-28 208.4 4.3 248 117-381 2-369 (397)
29 3geh_A MNME, tRNA modification 99.9 2.8E-22 9.7E-27 204.0 12.3 162 116-286 225-386 (462)
30 3q72_A GTP-binding protein RAD 99.9 7.1E-22 2.4E-26 172.1 13.1 156 116-282 3-162 (166)
31 2fg5_A RAB-22B, RAS-related pr 99.9 1.1E-21 3.9E-26 176.0 14.7 163 114-287 22-189 (192)
32 1fzq_A ADP-ribosylation factor 99.9 7E-21 2.4E-25 169.4 19.3 157 114-283 15-177 (181)
33 1r2q_A RAS-related protein RAB 99.9 1.1E-21 3.7E-26 171.0 13.5 160 114-284 5-169 (170)
34 4bas_A ADP-ribosylation factor 99.9 2.1E-21 7.3E-26 174.3 15.8 161 110-283 12-188 (199)
35 1m2o_B GTP-binding protein SAR 99.9 3.2E-21 1.1E-25 173.1 16.7 156 114-282 22-190 (190)
36 1mky_A Probable GTP-binding pr 99.9 1.8E-21 6E-26 197.6 16.8 169 114-284 179-355 (439)
37 2h17_A ADP-ribosylation factor 99.9 2.9E-21 1E-25 171.6 16.0 157 112-281 18-180 (181)
38 1c1y_A RAS-related protein RAP 99.9 2.8E-21 9.5E-26 168.1 15.5 158 114-282 2-165 (167)
39 1xzp_A Probable tRNA modificat 99.9 1.8E-22 6.2E-27 206.4 9.2 161 116-283 244-404 (482)
40 1upt_A ARL1, ADP-ribosylation 99.9 4.6E-21 1.6E-25 167.6 16.0 157 114-283 6-168 (171)
41 4dcu_A GTP-binding protein ENG 99.9 6.5E-22 2.2E-26 201.7 12.1 169 114-284 194-369 (456)
42 3gj0_A GTP-binding nuclear pro 99.9 2.3E-22 7.8E-27 184.6 7.8 165 112-288 12-179 (221)
43 1r8s_A ADP-ribosylation factor 99.9 4.2E-21 1.4E-25 166.8 15.3 154 117-283 2-161 (164)
44 2lkc_A Translation initiation 99.9 1.2E-21 4.1E-26 172.6 11.9 158 113-283 6-170 (178)
45 1z0j_A RAB-22, RAS-related pro 99.9 2.4E-21 8.1E-26 169.0 13.7 160 114-283 5-168 (170)
46 2h57_A ADP-ribosylation factor 99.9 5.9E-21 2E-25 170.8 16.5 160 113-283 19-186 (190)
47 2efe_B Small GTP-binding prote 99.9 3.1E-21 1.1E-25 170.4 14.4 161 114-285 11-176 (181)
48 1zd9_A ADP-ribosylation factor 99.9 1E-20 3.6E-25 169.1 17.4 159 114-284 21-185 (188)
49 2g6b_A RAS-related protein RAB 99.9 2.3E-21 7.7E-26 171.2 12.7 160 114-284 9-174 (180)
50 3k53_A Ferrous iron transport 99.9 2.1E-21 7.1E-26 184.6 13.3 166 114-285 2-167 (271)
51 1x3s_A RAS-related protein RAB 99.9 3E-21 1E-25 172.6 13.5 167 114-291 14-185 (195)
52 1ek0_A Protein (GTP-binding pr 99.9 2.5E-21 8.7E-26 168.7 12.7 159 115-283 3-168 (170)
53 3tw8_B RAS-related protein RAB 99.9 2E-21 6.8E-26 171.3 12.1 158 114-283 8-170 (181)
54 3vqt_A RF-3, peptide chain rel 99.9 2.4E-22 8.2E-27 208.7 7.2 237 114-363 30-373 (548)
55 1ksh_A ARF-like protein 2; sma 99.9 5.5E-21 1.9E-25 170.1 15.1 158 114-284 17-180 (186)
56 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.8E-21 2.3E-25 167.6 15.5 160 114-283 6-173 (177)
57 2fn4_A P23, RAS-related protei 99.9 3.3E-21 1.1E-25 169.9 13.4 161 111-283 5-171 (181)
58 2b6h_A ADP-ribosylation factor 99.9 9E-21 3.1E-25 170.4 16.4 158 113-283 27-190 (192)
59 3tkl_A RAS-related protein RAB 99.9 5E-21 1.7E-25 171.5 14.6 159 114-283 15-178 (196)
60 4dkx_A RAS-related protein RAB 99.9 1.8E-21 6E-26 179.1 11.9 163 112-284 10-176 (216)
61 2wjg_A FEOB, ferrous iron tran 99.9 2.6E-21 9E-26 172.3 12.5 167 113-286 5-171 (188)
62 3zvr_A Dynamin-1; hydrolase, D 99.9 7.7E-22 2.6E-26 209.7 10.5 213 114-332 50-336 (772)
63 3b1v_A Ferrous iron uptake tra 99.9 1.2E-21 4E-26 186.5 10.6 162 115-284 3-164 (272)
64 4dsu_A GTPase KRAS, isoform 2B 99.9 5.4E-21 1.8E-25 169.9 14.1 158 114-283 3-165 (189)
65 1mh1_A RAC1; GTP-binding, GTPa 99.9 3.9E-21 1.3E-25 170.4 13.0 163 114-287 4-183 (186)
66 2x2e_A Dynamin-1; nitration, h 99.9 1.9E-22 6.4E-27 199.1 4.8 213 114-331 30-315 (353)
67 2y8e_A RAB-protein 6, GH09086P 99.9 3.4E-21 1.2E-25 169.5 12.4 160 113-284 12-177 (179)
68 4djt_A GTP-binding nuclear pro 99.9 4.7E-21 1.6E-25 175.2 13.5 167 114-290 10-181 (218)
69 1g16_A RAS-related protein SEC 99.8 4.9E-21 1.7E-25 167.0 12.9 157 116-283 4-164 (170)
70 3t5g_A GTP-binding protein RHE 99.8 2.8E-21 9.7E-26 171.0 11.4 161 114-286 5-171 (181)
71 3reg_A RHO-like small GTPase; 99.8 4.4E-21 1.5E-25 172.2 12.8 160 114-284 22-188 (194)
72 2il1_A RAB12; G-protein, GDP, 99.8 9.1E-21 3.1E-25 170.2 14.7 160 113-282 24-188 (192)
73 1kao_A RAP2A; GTP-binding prot 99.8 3E-21 1E-25 167.5 10.7 157 114-282 2-164 (167)
74 1u8z_A RAS-related protein RAL 99.8 7.1E-21 2.4E-25 165.3 12.7 156 114-282 3-165 (168)
75 3j2k_7 ERF3, eukaryotic polype 99.8 1.1E-20 3.7E-25 191.7 16.0 152 114-276 16-217 (439)
76 2j1l_A RHO-related GTP-binding 99.8 9.1E-21 3.1E-25 173.4 13.9 160 113-283 32-208 (214)
77 3clv_A RAB5 protein, putative; 99.8 2E-20 6.8E-25 167.8 15.8 155 114-282 6-202 (208)
78 1z0f_A RAB14, member RAS oncog 99.8 1E-20 3.4E-25 166.5 13.6 159 114-283 14-177 (179)
79 3kkq_A RAS-related protein M-R 99.8 9.6E-21 3.3E-25 167.9 13.5 159 111-282 14-180 (183)
80 2bme_A RAB4A, RAS-related prot 99.8 1.1E-20 3.8E-25 167.8 13.8 158 114-283 9-172 (186)
81 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-20 5.4E-25 166.4 14.7 158 113-283 16-179 (183)
82 2oil_A CATX-8, RAS-related pro 99.8 6.9E-21 2.4E-25 170.6 12.4 159 114-282 24-186 (193)
83 2atx_A Small GTP binding prote 99.8 9.5E-21 3.3E-25 169.8 13.3 158 114-282 17-191 (194)
84 1vg8_A RAS-related protein RAB 99.8 1.1E-20 3.6E-25 171.0 13.6 160 114-283 7-174 (207)
85 4gzl_A RAS-related C3 botulinu 99.8 9E-21 3.1E-25 172.1 13.1 158 114-282 29-203 (204)
86 2x77_A ADP-ribosylation factor 99.8 9.1E-21 3.1E-25 169.2 12.7 157 114-283 21-183 (189)
87 3cph_A RAS-related protein SEC 99.8 1E-20 3.5E-25 171.8 13.2 159 114-283 19-181 (213)
88 2ce2_X GTPase HRAS; signaling 99.8 2.1E-20 7.2E-25 161.7 14.1 157 115-283 3-164 (166)
89 2hup_A RAS-related protein RAB 99.8 1.9E-20 6.4E-25 169.6 14.3 159 114-283 28-192 (201)
90 3qq5_A Small GTP-binding prote 99.8 1.6E-21 5.4E-26 196.2 7.6 164 114-285 33-197 (423)
91 2gf9_A RAS-related protein RAB 99.8 1.4E-20 4.9E-25 168.1 12.6 159 115-283 22-184 (189)
92 2a9k_A RAS-related protein RAL 99.8 1.8E-20 6.3E-25 166.0 13.2 158 113-283 16-180 (187)
93 2erx_A GTP-binding protein DI- 99.8 1.7E-20 5.7E-25 163.8 12.7 158 115-284 3-167 (172)
94 3q3j_B RHO-related GTP-binding 99.8 6.8E-21 2.3E-25 174.4 10.4 162 113-285 25-204 (214)
95 2fh5_B SR-beta, signal recogni 99.8 2.5E-20 8.7E-25 169.8 14.1 157 114-282 6-214 (214)
96 2ew1_A RAS-related protein RAB 99.8 1.8E-20 6.1E-25 170.2 12.9 159 114-283 25-188 (201)
97 1zbd_A Rabphilin-3A; G protein 99.8 2.1E-20 7.1E-25 168.8 13.2 158 115-282 8-169 (203)
98 1ky3_A GTP-binding protein YPT 99.8 2E-20 6.7E-25 165.0 12.8 159 114-282 7-176 (182)
99 2iwr_A Centaurin gamma 1; ANK 99.8 2.2E-20 7.7E-25 164.7 13.1 151 114-282 6-167 (178)
100 3bwd_D RAC-like GTP-binding pr 99.8 4.1E-21 1.4E-25 169.8 8.2 159 114-283 7-180 (182)
101 2fu5_C RAS-related protein RAB 99.8 6.2E-21 2.1E-25 169.1 9.2 157 115-283 8-170 (183)
102 1z06_A RAS-related protein RAB 99.8 4.3E-20 1.5E-24 164.9 14.7 161 113-283 18-187 (189)
103 3bc1_A RAS-related protein RAB 99.8 6.1E-20 2.1E-24 163.5 15.6 157 114-282 10-183 (195)
104 2q3h_A RAS homolog gene family 99.8 1.8E-20 6.3E-25 168.9 12.4 159 114-283 19-194 (201)
105 3con_A GTPase NRAS; structural 99.8 4E-20 1.4E-24 165.0 14.4 160 112-283 18-182 (190)
106 3oes_A GTPase rhebl1; small GT 99.8 7.3E-21 2.5E-25 172.0 9.5 160 113-284 22-187 (201)
107 2e87_A Hypothetical protein PH 99.8 1E-19 3.5E-24 179.8 18.5 166 114-283 166-335 (357)
108 3dz8_A RAS-related protein RAB 99.8 8.1E-21 2.8E-25 170.2 9.7 159 114-282 22-184 (191)
109 2a5j_A RAS-related protein RAB 99.8 1.7E-20 5.7E-25 168.1 11.7 158 114-282 20-182 (191)
110 2hxs_A RAB-26, RAS-related pro 99.8 1.7E-20 5.8E-25 165.2 11.5 161 114-286 5-175 (178)
111 3q85_A GTP-binding protein REM 99.8 2.4E-20 8.3E-25 162.8 12.3 157 116-282 3-165 (169)
112 3mca_A HBS1, elongation factor 99.8 1.7E-22 5.9E-27 211.8 -1.8 159 114-283 176-396 (592)
113 2j0v_A RAC-like GTP-binding pr 99.8 1.7E-20 5.7E-25 170.8 11.6 161 114-285 8-181 (212)
114 1lnz_A SPO0B-associated GTP-bi 99.8 1.1E-20 3.9E-25 185.1 11.0 168 116-292 159-340 (342)
115 1z08_A RAS-related protein RAB 99.8 1.2E-20 4.2E-25 164.7 10.0 158 114-283 5-168 (170)
116 2p5s_A RAS and EF-hand domain 99.8 2.8E-20 9.4E-25 167.9 12.5 160 114-283 27-196 (199)
117 2o52_A RAS-related protein RAB 99.8 1.7E-20 5.7E-25 169.7 11.0 158 114-283 24-187 (200)
118 1z2a_A RAS-related protein RAB 99.8 2.7E-20 9.1E-25 162.0 11.7 156 114-282 4-165 (168)
119 2bov_A RAla, RAS-related prote 99.8 3.8E-20 1.3E-24 167.0 13.1 158 113-283 12-176 (206)
120 2gco_A H9, RHO-related GTP-bin 99.8 3.6E-20 1.2E-24 167.5 12.9 159 114-282 24-198 (201)
121 2gf0_A GTP-binding protein DI- 99.8 6E-20 2.1E-24 164.8 14.2 160 114-285 7-172 (199)
122 3t1o_A Gliding protein MGLA; G 99.8 1.7E-20 5.9E-25 167.7 10.4 158 114-282 13-190 (198)
123 3o47_A ADP-ribosylation factor 99.8 7.6E-20 2.6E-24 178.7 15.9 158 114-284 164-327 (329)
124 2bcg_Y Protein YP2, GTP-bindin 99.8 3.7E-20 1.2E-24 167.7 12.7 159 114-283 7-170 (206)
125 2fv8_A H6, RHO-related GTP-bin 99.8 3.2E-20 1.1E-24 168.6 12.3 159 114-283 24-199 (207)
126 1wb1_A Translation elongation 99.8 4.3E-20 1.5E-24 189.3 14.3 160 113-283 17-188 (482)
127 2atv_A RERG, RAS-like estrogen 99.8 6.1E-20 2.1E-24 165.1 13.5 155 114-282 27-189 (196)
128 3cbq_A GTP-binding protein REM 99.8 5E-20 1.7E-24 166.2 12.8 161 114-284 22-188 (195)
129 2rdo_7 EF-G, elongation factor 99.8 4.9E-20 1.7E-24 196.8 14.8 236 114-364 9-375 (704)
130 3lxw_A GTPase IMAP family memb 99.8 3.1E-20 1.1E-24 174.2 11.6 178 114-294 20-219 (247)
131 3ihw_A Centg3; RAS, centaurin, 99.8 1E-19 3.4E-24 162.6 13.9 154 112-282 17-178 (184)
132 3llu_A RAS-related GTP-binding 99.8 1.2E-19 4.2E-24 163.4 14.4 165 111-282 16-195 (196)
133 2f7s_A C25KG, RAS-related prot 99.8 7.7E-20 2.6E-24 166.9 13.2 159 114-283 24-198 (217)
134 2ywe_A GTP-binding protein LEP 99.8 7.4E-20 2.5E-24 191.0 14.8 198 115-338 6-225 (600)
135 3cb4_D GTP-binding protein LEP 99.8 1.9E-20 6.4E-25 195.8 10.2 197 116-338 5-223 (599)
136 2g3y_A GTP-binding protein GEM 99.8 6.3E-20 2.2E-24 168.1 12.0 160 114-282 36-201 (211)
137 2cxx_A Probable GTP-binding pr 99.8 2.6E-19 8.8E-24 159.3 15.4 159 116-283 2-183 (190)
138 2yc2_C IFT27, small RAB-relate 99.8 3.7E-20 1.3E-24 167.1 9.9 159 114-283 19-191 (208)
139 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.8E-24 185.7 15.8 160 114-286 321-486 (497)
140 2h5e_A Peptide chain release f 99.8 1.6E-20 5.4E-25 194.3 8.0 232 114-359 12-352 (529)
141 2qtf_A Protein HFLX, GTP-bindi 99.8 1.2E-19 3.9E-24 179.6 13.7 169 117-287 181-357 (364)
142 1zo1_I IF2, translation initia 99.8 2.5E-22 8.5E-27 205.5 -5.8 252 114-394 3-262 (501)
143 3sjy_A Translation initiation 99.8 2.1E-19 7.1E-24 180.4 15.5 163 114-286 7-194 (403)
144 1m7b_A RND3/RHOE small GTP-bin 99.8 3.8E-20 1.3E-24 164.7 8.8 158 114-282 6-181 (184)
145 1f60_A Elongation factor EEF1A 99.8 5.7E-21 1.9E-25 194.8 3.7 229 114-361 6-329 (458)
146 2elf_A Protein translation elo 99.8 1.6E-20 5.4E-25 186.2 6.8 146 117-284 23-180 (370)
147 3cpj_B GTP-binding protein YPT 99.8 6.2E-20 2.1E-24 168.8 10.3 159 114-284 12-176 (223)
148 1dar_A EF-G, elongation factor 99.8 1.9E-19 6.7E-24 191.9 15.0 117 114-241 11-144 (691)
149 2c78_A Elongation factor TU-A; 99.8 3.9E-20 1.3E-24 185.8 8.7 201 114-338 10-253 (405)
150 3r7w_A Gtpase1, GTP-binding pr 99.8 7.2E-19 2.5E-23 170.1 16.7 164 115-283 3-180 (307)
151 3t5d_A Septin-7; GTP-binding p 99.8 5.2E-19 1.8E-23 168.3 15.2 166 116-284 9-204 (274)
152 3l0i_B RAS-related protein RAB 99.8 2.9E-21 9.9E-26 174.3 -0.3 160 114-284 32-196 (199)
153 3izy_P Translation initiation 99.8 5.4E-21 1.9E-25 197.1 1.1 159 114-284 3-168 (537)
154 3c5c_A RAS-like protein 12; GD 99.8 1.3E-19 4.4E-24 162.1 9.8 155 114-282 20-184 (187)
155 2xex_A Elongation factor G; GT 99.8 1.8E-20 6.2E-25 199.9 4.9 231 114-359 9-362 (693)
156 1gwn_A RHO-related GTP-binding 99.8 9.6E-20 3.3E-24 165.8 8.7 158 114-282 27-202 (205)
157 3p26_A Elongation factor 1 alp 99.8 3E-20 1E-24 190.8 5.8 150 114-273 32-227 (483)
158 2cjw_A GTP-binding protein GEM 99.8 2E-19 7E-24 161.7 10.5 160 115-283 6-171 (192)
159 1kk1_A EIF2gamma; initiation o 99.8 1.5E-18 5.1E-23 174.6 17.5 210 115-340 10-251 (410)
160 1d2e_A Elongation factor TU (E 99.8 1.2E-18 4.2E-23 174.4 16.6 201 115-339 3-237 (397)
161 2zej_A Dardarin, leucine-rich 99.8 7.1E-19 2.4E-23 156.7 12.6 159 116-284 3-178 (184)
162 1s0u_A EIF-2-gamma, translatio 99.8 1.9E-18 6.6E-23 173.6 16.9 162 114-285 7-199 (408)
163 3th5_A RAS-related C3 botulinu 99.7 1E-20 3.6E-25 171.2 0.0 158 114-282 29-203 (204)
164 3lxx_A GTPase IMAP family memb 99.8 8.6E-19 2.9E-23 163.1 11.4 168 114-284 28-214 (239)
165 1g7s_A Translation initiation 99.8 1.1E-18 3.6E-23 182.7 12.8 206 113-340 3-266 (594)
166 2wkq_A NPH1-1, RAS-related C3 99.8 1.2E-18 4E-23 169.1 12.0 159 114-283 154-329 (332)
167 1pui_A ENGB, probable GTP-bind 99.8 1.7E-17 5.9E-22 150.4 17.5 167 114-286 25-201 (210)
168 2dy1_A Elongation factor G; tr 99.8 2.9E-18 1E-22 182.1 12.8 199 114-338 8-316 (665)
169 2www_A Methylmalonic aciduria 99.8 1.8E-19 6.1E-24 177.4 2.9 186 115-321 74-316 (349)
170 1zun_B Sulfate adenylate trans 99.8 1.1E-17 3.7E-22 169.4 16.1 148 115-273 24-213 (434)
171 3p32_A Probable GTPase RV1496/ 99.7 7.2E-19 2.5E-23 173.5 6.2 184 114-317 78-317 (355)
172 3avx_A Elongation factor TS, e 99.7 2.8E-18 9.4E-23 187.5 10.4 203 113-339 294-528 (1289)
173 4fn5_A EF-G 1, elongation fact 99.7 7.6E-19 2.6E-23 188.1 5.6 115 115-240 13-151 (709)
174 1jny_A EF-1-alpha, elongation 99.7 7.8E-18 2.7E-22 170.5 12.6 148 114-272 5-201 (435)
175 4a9a_A Ribosome-interacting GT 99.7 1.7E-17 5.9E-22 163.9 12.7 118 117-238 74-194 (376)
176 2j69_A Bacterial dynamin-like 99.7 9.5E-18 3.3E-22 179.0 11.2 161 115-283 69-324 (695)
177 3dpu_A RAB family protein; roc 99.7 9E-18 3.1E-22 174.5 10.5 160 113-287 39-211 (535)
178 3j25_A Tetracycline resistance 99.7 3.6E-18 1.2E-22 180.7 6.3 198 116-338 3-280 (638)
179 2p67_A LAO/AO transport system 99.7 6.8E-18 2.3E-22 165.7 7.0 184 114-318 55-295 (341)
180 2f9l_A RAB11B, member RAS onco 99.7 1.1E-16 3.8E-21 144.2 13.0 158 115-283 5-167 (199)
181 3c5h_A Glucocorticoid receptor 99.7 7.9E-17 2.7E-21 151.6 11.1 87 195-282 162-253 (255)
182 1r5b_A Eukaryotic peptide chai 99.7 9.5E-17 3.2E-21 163.9 11.7 150 115-275 43-243 (467)
183 1nrj_B SR-beta, signal recogni 99.7 1.8E-16 6.2E-21 144.5 8.9 144 114-270 11-170 (218)
184 1h65_A Chloroplast outer envel 99.7 7.3E-16 2.5E-20 146.1 13.4 127 114-242 38-170 (270)
185 3def_A T7I23.11 protein; chlor 99.6 6.8E-16 2.3E-20 145.7 12.7 124 114-239 35-164 (262)
186 3t34_A Dynamin-related protein 99.6 4.2E-16 1.4E-20 154.0 10.7 160 114-277 33-254 (360)
187 3r7w_B Gtpase2, GTP-binding pr 99.6 1.4E-15 4.6E-20 147.2 13.4 157 117-283 1-173 (331)
188 1oix_A RAS-related protein RAB 99.6 1.1E-15 3.9E-20 136.9 12.0 157 115-282 29-190 (191)
189 1udx_A The GTP-binding protein 99.6 9.8E-16 3.3E-20 153.6 12.7 164 116-286 158-327 (416)
190 2qm8_A GTPase/ATPase; G protei 99.6 8.2E-17 2.8E-21 157.6 4.2 185 114-319 54-296 (337)
191 2qag_A Septin-2, protein NEDD5 99.6 1.6E-15 5.4E-20 149.9 12.7 164 116-283 38-236 (361)
192 1yrb_A ATP(GTP)binding protein 99.6 3.3E-15 1.1E-19 140.2 10.1 168 112-285 11-258 (262)
193 2v3c_C SRP54, signal recogniti 99.6 1.4E-17 4.9E-22 167.9 -7.4 244 116-379 100-414 (432)
194 2ged_A SR-beta, signal recogni 99.6 4.2E-15 1.4E-19 132.6 9.5 123 114-248 47-178 (193)
195 2wsm_A Hydrogenase expression/ 99.6 4.3E-15 1.5E-19 135.8 9.1 152 114-283 29-213 (221)
196 2qag_C Septin-7; cell cycle, c 99.6 6.8E-15 2.3E-19 147.6 11.2 211 116-368 32-283 (418)
197 1jal_A YCHF protein; nucleotid 99.6 2.2E-14 7.7E-19 140.9 13.1 89 116-207 3-108 (363)
198 1n0u_A EF-2, elongation factor 99.5 1.2E-14 4.2E-19 158.0 5.0 115 114-239 18-163 (842)
199 2j37_W Signal recognition part 99.5 6.2E-16 2.1E-20 158.3 -4.9 258 114-379 100-422 (504)
200 2dby_A GTP-binding protein; GD 99.5 1.1E-13 3.7E-18 136.7 9.9 86 117-207 3-111 (368)
201 2qnr_A Septin-2, protein NEDD5 99.4 3.8E-13 1.3E-17 129.5 11.8 162 116-283 19-213 (301)
202 2ohf_A Protein OLA1, GTP-bindi 99.4 4.5E-14 1.5E-18 140.1 4.3 191 115-326 22-232 (396)
203 1tq4_A IIGP1, interferon-induc 99.4 3.5E-12 1.2E-16 127.5 13.7 190 114-313 68-288 (413)
204 2hf9_A Probable hydrogenase ni 99.4 1.2E-12 4.2E-17 119.8 9.3 57 226-282 164-222 (226)
205 3ec1_A YQEH GTPase; atnos1, at 99.4 2.5E-14 8.6E-19 141.6 -2.9 149 116-271 163-318 (369)
206 3h2y_A GTPase family protein; 99.3 7.1E-14 2.4E-18 138.3 -1.7 145 116-267 161-313 (368)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.4E-13 8.3E-18 135.0 -0.4 182 115-327 20-235 (392)
208 2qag_B Septin-6, protein NEDD5 99.2 1.2E-10 4.1E-15 116.4 14.7 146 117-265 44-217 (427)
209 3sop_A Neuronal-specific septi 99.1 5.1E-10 1.8E-14 105.9 11.3 129 116-247 3-161 (270)
210 4fid_A G protein alpha subunit 99.1 3.8E-10 1.3E-14 109.8 9.7 76 156-240 154-242 (340)
211 1u0l_A Probable GTPase ENGC; p 99.0 1.6E-09 5.5E-14 104.1 9.7 104 164-281 64-170 (301)
212 1puj_A YLQF, conserved hypothe 98.9 1.9E-10 6.3E-15 109.6 1.7 60 114-176 119-178 (282)
213 1cip_A Protein (guanine nucleo 98.9 1.3E-09 4.4E-14 107.0 6.3 117 157-282 187-342 (353)
214 1f5n_A Interferon-induced guan 98.8 3.2E-09 1.1E-13 110.4 6.4 61 114-176 37-104 (592)
215 1zcb_A G alpha I/13; GTP-bindi 98.8 5.5E-09 1.9E-13 102.8 6.2 117 157-282 195-351 (362)
216 3dm5_A SRP54, signal recogniti 98.7 3.5E-08 1.2E-12 99.0 11.3 148 114-274 99-281 (443)
217 1puj_A YLQF, conserved hypothe 98.7 4.3E-08 1.5E-12 93.2 9.8 102 168-283 4-105 (282)
218 1azs_C GS-alpha; complex (lyas 98.7 1.9E-08 6.6E-13 100.0 7.2 116 158-282 212-383 (402)
219 2xtz_A Guanine nucleotide-bind 98.7 1.5E-08 5E-13 99.4 5.9 113 161-282 181-343 (354)
220 2xxa_A Signal recognition part 98.7 3.2E-10 1.1E-14 114.2 -6.6 242 115-376 100-412 (433)
221 3l82_B F-box only protein 4; T 98.6 1.6E-07 5.6E-12 84.4 9.8 99 186-284 116-223 (227)
222 3ohm_A Guanine nucleotide-bind 98.6 7E-08 2.4E-12 93.4 8.0 118 156-282 160-316 (327)
223 2yv5_A YJEQ protein; hydrolase 98.6 1.1E-07 3.7E-12 91.3 8.5 85 191-280 75-165 (302)
224 3cnl_A YLQF, putative uncharac 98.5 2.7E-08 9.1E-13 93.6 3.0 57 116-175 100-156 (262)
225 3kl4_A SRP54, signal recogniti 98.5 2E-07 6.7E-12 93.6 8.2 145 115-272 97-278 (433)
226 3h2y_A GTPase family protein; 98.5 2.4E-07 8.3E-12 91.3 8.3 92 187-282 61-158 (368)
227 3ec1_A YQEH GTPase; atnos1, at 98.4 5E-07 1.7E-11 89.1 9.2 91 189-283 65-161 (369)
228 3cnl_A YLQF, putative uncharac 98.3 2.4E-07 8.1E-12 87.1 4.3 85 188-281 14-98 (262)
229 3l2o_B F-box only protein 4; s 98.3 9.7E-07 3.3E-11 83.2 8.2 98 187-284 202-308 (312)
230 3q5d_A Atlastin-1; G protein, 98.3 4.7E-07 1.6E-11 91.1 6.2 63 112-175 64-152 (447)
231 3szr_A Interferon-induced GTP- 98.3 1.1E-06 3.8E-11 92.2 9.1 77 163-241 147-229 (608)
232 1j8m_F SRP54, signal recogniti 98.3 2E-06 7E-11 82.1 9.5 146 115-274 98-281 (297)
233 1t9h_A YLOQ, probable GTPase E 97.9 4.7E-06 1.6E-10 79.9 3.7 84 192-278 83-171 (307)
234 3e70_C DPA, signal recognition 97.7 0.00012 4.2E-09 70.7 9.9 148 114-274 128-310 (328)
235 1rj9_A FTSY, signal recognitio 97.6 0.00034 1.2E-08 66.8 11.5 120 115-239 102-260 (304)
236 2px0_A Flagellar biosynthesis 97.5 0.00016 5.4E-09 68.9 8.0 117 115-240 105-253 (296)
237 2rcn_A Probable GTPase ENGC; Y 97.5 0.00021 7.2E-09 69.8 8.7 83 192-278 127-213 (358)
238 1zu4_A FTSY; GTPase, signal re 97.5 0.00086 2.9E-08 64.5 12.8 119 115-240 105-268 (320)
239 2yhs_A FTSY, cell division pro 97.4 0.00053 1.8E-08 69.5 10.6 148 115-273 293-479 (503)
240 1t9h_A YLOQ, probable GTPase E 97.4 4.8E-05 1.6E-09 72.9 1.6 56 116-175 174-236 (307)
241 4dzz_A Plasmid partitioning pr 97.3 0.00028 9.7E-09 62.5 6.2 111 117-239 3-143 (206)
242 2ffh_A Protein (FFH); SRP54, s 97.2 0.00072 2.5E-08 67.5 8.7 118 115-240 98-251 (425)
243 2rcn_A Probable GTPase ENGC; Y 97.1 0.00023 7.9E-09 69.5 3.8 56 116-174 216-279 (358)
244 1nij_A Hypothetical protein YJ 97.0 0.0035 1.2E-07 60.1 11.2 24 115-138 4-27 (318)
245 1vma_A Cell division protein F 97.0 0.0026 8.9E-08 60.7 10.1 119 116-240 105-263 (306)
246 2yv5_A YJEQ protein; hydrolase 97.0 0.00065 2.2E-08 64.8 5.7 23 116-139 166-188 (302)
247 3ney_A 55 kDa erythrocyte memb 97.0 0.00012 4.1E-09 65.5 0.1 59 112-172 16-75 (197)
248 3b9q_A Chloroplast SRP recepto 96.9 0.0031 1.1E-07 60.0 9.5 119 116-239 101-259 (302)
249 2og2_A Putative signal recogni 96.9 0.005 1.7E-07 60.0 11.2 121 115-240 157-317 (359)
250 1u0l_A Probable GTPase ENGC; p 96.8 0.00074 2.5E-08 64.3 4.4 26 116-141 170-195 (301)
251 3cwq_A Para family chromosome 96.8 0.0017 5.9E-08 58.2 6.1 111 117-240 2-134 (209)
252 3end_A Light-independent proto 96.8 0.0041 1.4E-07 58.9 9.1 67 162-238 156-225 (307)
253 1ls1_A Signal recognition part 96.7 0.0043 1.5E-07 58.9 8.9 118 115-240 98-251 (295)
254 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0051 1.8E-07 61.6 7.5 23 114-136 66-88 (457)
255 1bif_A 6-phosphofructo-2-kinas 96.3 0.0004 1.4E-08 70.4 -1.7 102 115-222 39-147 (469)
256 3kjh_A CO dehydrogenase/acetyl 96.2 0.0021 7E-08 58.5 2.6 65 161-237 130-194 (254)
257 1kgd_A CASK, peripheral plasma 96.1 0.0026 8.8E-08 55.5 3.1 24 115-138 5-28 (180)
258 3ea0_A ATPase, para family; al 96.1 0.055 1.9E-06 48.8 12.0 67 163-240 119-186 (245)
259 1ye8_A Protein THEP1, hypothet 96.0 0.0031 1E-07 55.2 2.7 23 117-139 2-24 (178)
260 1ex7_A Guanylate kinase; subst 95.9 0.0014 5E-08 57.8 0.2 39 117-155 3-42 (186)
261 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.21 7.3E-06 45.9 15.1 22 116-137 5-26 (260)
262 3la6_A Tyrosine-protein kinase 95.9 0.054 1.8E-06 50.9 11.0 66 164-240 203-268 (286)
263 1lvg_A Guanylate kinase, GMP k 95.8 0.0038 1.3E-07 55.4 2.4 22 117-138 6-27 (198)
264 2oze_A ORF delta'; para, walke 95.7 0.079 2.7E-06 49.6 11.5 67 163-240 155-226 (298)
265 1zp6_A Hypothetical protein AT 95.7 0.0066 2.3E-07 52.9 3.6 23 116-138 10-32 (191)
266 3q9l_A Septum site-determining 95.6 0.044 1.5E-06 50.0 9.3 66 162-238 113-185 (260)
267 1znw_A Guanylate kinase, GMP k 95.6 0.0051 1.7E-07 54.8 2.7 23 116-138 21-43 (207)
268 3c8u_A Fructokinase; YP_612366 95.6 0.0058 2E-07 54.4 3.0 24 115-138 22-45 (208)
269 3tr0_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 53.7 3.1 23 116-138 8-30 (205)
270 3tau_A Guanylate kinase, GMP k 95.5 0.0066 2.3E-07 54.2 3.2 25 115-139 8-32 (208)
271 3a00_A Guanylate kinase, GMP k 95.4 0.0059 2E-07 53.4 2.4 22 117-138 3-24 (186)
272 1z6g_A Guanylate kinase; struc 95.4 0.0061 2.1E-07 54.9 2.5 23 116-138 24-46 (218)
273 3tif_A Uncharacterized ABC tra 95.4 0.0079 2.7E-07 55.0 3.3 24 116-139 32-55 (235)
274 2pcj_A ABC transporter, lipopr 95.4 0.0082 2.8E-07 54.4 3.2 23 117-139 32-54 (224)
275 1s96_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 54.5 2.9 24 116-139 17-40 (219)
276 4gp7_A Metallophosphoesterase; 95.3 0.0095 3.3E-07 51.4 3.2 21 117-137 11-31 (171)
277 1jbk_A CLPB protein; beta barr 95.2 0.023 7.8E-07 48.6 5.4 23 116-138 44-66 (195)
278 2cbz_A Multidrug resistance-as 95.2 0.01 3.6E-07 54.3 3.3 24 116-139 32-55 (237)
279 2onk_A Molybdate/tungstate ABC 95.2 0.01 3.5E-07 54.4 3.3 24 116-139 25-48 (240)
280 1knq_A Gluconate kinase; ALFA/ 95.2 0.012 4E-07 50.6 3.5 23 115-137 8-30 (175)
281 1g6h_A High-affinity branched- 95.1 0.011 3.8E-07 54.8 3.3 24 116-139 34-57 (257)
282 2j41_A Guanylate kinase; GMP, 95.1 0.011 3.7E-07 52.1 3.1 24 116-139 7-30 (207)
283 1mv5_A LMRA, multidrug resista 95.1 0.011 3.8E-07 54.2 3.3 23 117-139 30-52 (243)
284 1b0u_A Histidine permease; ABC 95.1 0.011 3.8E-07 54.9 3.3 24 116-139 33-56 (262)
285 2ff7_A Alpha-hemolysin translo 95.1 0.011 3.9E-07 54.3 3.3 23 117-139 37-59 (247)
286 3gfo_A Cobalt import ATP-bindi 95.1 0.011 3.8E-07 55.4 3.3 24 116-139 35-58 (275)
287 4g1u_C Hemin import ATP-bindin 95.1 0.011 3.9E-07 55.0 3.3 24 116-139 38-61 (266)
288 2pze_A Cystic fibrosis transme 95.1 0.012 4E-07 53.6 3.3 23 117-139 36-58 (229)
289 3asz_A Uridine kinase; cytidin 95.1 0.01 3.6E-07 52.6 2.9 23 116-138 7-29 (211)
290 1ji0_A ABC transporter; ATP bi 95.0 0.013 4.3E-07 53.8 3.3 23 117-139 34-56 (240)
291 1sgw_A Putative ABC transporte 95.0 0.012 4.1E-07 53.1 3.1 23 117-139 37-59 (214)
292 2olj_A Amino acid ABC transpor 95.0 0.013 4.4E-07 54.6 3.3 24 116-139 51-74 (263)
293 1htw_A HI0065; nucleotide-bind 95.0 0.011 3.9E-07 50.5 2.7 24 116-139 34-57 (158)
294 2ghi_A Transport protein; mult 94.9 0.013 4.5E-07 54.4 3.3 23 116-138 47-69 (260)
295 2bbw_A Adenylate kinase 4, AK4 94.9 0.014 4.9E-07 53.2 3.5 21 116-136 28-48 (246)
296 2qi9_C Vitamin B12 import ATP- 94.9 0.013 4.6E-07 54.0 3.3 23 117-139 28-50 (249)
297 2d2e_A SUFC protein; ABC-ATPas 94.9 0.013 4.6E-07 54.0 3.3 22 117-138 31-52 (250)
298 1vpl_A ABC transporter, ATP-bi 94.9 0.013 4.6E-07 54.2 3.3 24 116-139 42-65 (256)
299 2ixe_A Antigen peptide transpo 94.9 0.014 4.7E-07 54.6 3.3 24 116-139 46-69 (271)
300 3b85_A Phosphate starvation-in 94.8 0.01 3.6E-07 53.2 2.2 22 117-138 24-45 (208)
301 2zu0_C Probable ATP-dependent 94.8 0.014 4.9E-07 54.3 3.3 23 116-138 47-69 (267)
302 2ihy_A ABC transporter, ATP-bi 94.8 0.015 5E-07 54.7 3.3 23 117-139 49-71 (279)
303 2eyu_A Twitching motility prot 94.8 0.014 4.8E-07 54.2 3.1 25 114-138 24-48 (261)
304 4eun_A Thermoresistant glucoki 94.8 0.014 4.9E-07 51.5 2.9 23 116-138 30-52 (200)
305 2nq2_C Hypothetical ABC transp 94.8 0.015 5.2E-07 53.7 3.2 23 117-139 33-55 (253)
306 1np6_A Molybdopterin-guanine d 94.8 0.014 4.7E-07 50.9 2.7 23 116-138 7-29 (174)
307 2yz2_A Putative ABC transporte 94.8 0.016 5.4E-07 54.0 3.3 24 116-139 34-57 (266)
308 3lw7_A Adenylate kinase relate 94.7 0.017 5.7E-07 49.0 3.1 19 117-135 3-21 (179)
309 2qor_A Guanylate kinase; phosp 94.7 0.015 5.1E-07 51.5 2.9 23 115-137 12-34 (204)
310 1kag_A SKI, shikimate kinase I 94.7 0.013 4.4E-07 50.1 2.4 22 117-138 6-27 (173)
311 2v9p_A Replication protein E1; 94.7 0.015 5.2E-07 55.3 3.0 24 115-138 126-149 (305)
312 2bdt_A BH3686; alpha-beta prot 94.7 0.015 5E-07 50.7 2.7 21 117-137 4-24 (189)
313 2i3b_A HCR-ntpase, human cance 94.6 0.013 4.4E-07 51.7 2.2 22 117-138 3-24 (189)
314 3aez_A Pantothenate kinase; tr 94.5 0.018 6.2E-07 54.9 3.2 25 114-138 89-113 (312)
315 3kb2_A SPBC2 prophage-derived 94.5 0.02 6.8E-07 48.6 3.1 21 117-137 3-23 (173)
316 2xj4_A MIPZ; replication, cell 94.5 0.033 1.1E-06 52.2 4.8 33 163-206 104-136 (286)
317 2pjz_A Hypothetical protein ST 94.5 0.02 6.9E-07 53.3 3.3 23 117-139 32-54 (263)
318 3t15_A Ribulose bisphosphate c 94.5 0.066 2.2E-06 50.4 6.9 21 117-137 38-58 (293)
319 3lnc_A Guanylate kinase, GMP k 94.4 0.015 5E-07 52.6 2.2 24 116-139 28-52 (231)
320 4b4t_J 26S protease regulatory 94.4 0.36 1.2E-05 47.5 12.2 22 117-138 184-205 (405)
321 2qt1_A Nicotinamide riboside k 94.4 0.029 1E-06 49.6 4.0 24 115-138 21-44 (207)
322 3nh6_A ATP-binding cassette SU 94.4 0.014 4.8E-07 55.6 2.0 24 116-139 81-104 (306)
323 2f1r_A Molybdopterin-guanine d 94.3 0.0096 3.3E-07 51.7 0.7 22 117-138 4-25 (171)
324 4a74_A DNA repair and recombin 94.3 0.019 6.4E-07 51.3 2.7 23 116-138 26-48 (231)
325 3uie_A Adenylyl-sulfate kinase 94.3 0.022 7.6E-07 50.2 3.1 24 115-138 25-48 (200)
326 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.28 9.7E-06 44.4 10.8 22 116-137 40-61 (262)
327 2bbs_A Cystic fibrosis transme 94.3 0.022 7.6E-07 53.7 3.3 24 116-139 65-88 (290)
328 1qhx_A CPT, protein (chloramph 94.3 0.027 9.4E-07 48.2 3.5 22 116-137 4-25 (178)
329 1y63_A LMAJ004144AAA protein; 94.3 0.031 1.1E-06 48.6 3.9 25 114-138 9-33 (184)
330 2jeo_A Uridine-cytidine kinase 94.3 0.022 7.6E-07 52.0 3.1 24 114-137 24-47 (245)
331 2wwf_A Thymidilate kinase, put 94.3 0.032 1.1E-06 49.2 4.0 24 114-137 9-32 (212)
332 4b4t_L 26S protease subunit RP 94.2 0.21 7.2E-06 49.8 10.3 22 117-138 217-238 (437)
333 1ly1_A Polynucleotide kinase; 94.2 0.026 8.7E-07 48.3 3.2 21 117-137 4-24 (181)
334 1kht_A Adenylate kinase; phosp 94.2 0.026 8.8E-07 48.8 3.2 22 116-137 4-25 (192)
335 1cke_A CK, MSSA, protein (cyti 94.1 0.022 7.7E-07 50.9 2.7 22 116-137 6-27 (227)
336 3ec2_A DNA replication protein 94.1 0.02 6.8E-07 49.5 2.2 23 116-138 39-61 (180)
337 2plr_A DTMP kinase, probable t 94.1 0.03 1E-06 49.3 3.5 23 115-137 4-26 (213)
338 3zvl_A Bifunctional polynucleo 94.1 0.14 4.7E-06 50.8 8.6 24 115-138 258-281 (416)
339 3jvv_A Twitching mobility prot 94.0 0.025 8.5E-07 55.0 3.1 25 114-138 122-146 (356)
340 2ehv_A Hypothetical protein PH 94.0 0.027 9.2E-07 50.9 3.1 22 116-137 31-52 (251)
341 2if2_A Dephospho-COA kinase; a 94.0 0.024 8.1E-07 49.9 2.7 21 117-137 3-23 (204)
342 3tui_C Methionine import ATP-b 94.0 0.027 9.3E-07 54.9 3.3 25 115-139 54-78 (366)
343 1xjc_A MOBB protein homolog; s 94.0 0.031 1.1E-06 48.4 3.3 23 115-137 4-26 (169)
344 1sq5_A Pantothenate kinase; P- 94.0 0.028 9.7E-07 53.3 3.3 25 114-138 79-103 (308)
345 1tev_A UMP-CMP kinase; ploop, 94.0 0.03 1E-06 48.5 3.2 23 115-137 3-25 (196)
346 3fvq_A Fe(3+) IONS import ATP- 94.0 0.028 9.7E-07 54.7 3.3 24 116-139 31-54 (359)
347 1jjv_A Dephospho-COA kinase; P 94.0 0.031 1.1E-06 49.3 3.3 21 117-137 4-24 (206)
348 3iij_A Coilin-interacting nucl 93.9 0.034 1.2E-06 47.8 3.5 23 114-136 10-32 (180)
349 2rhm_A Putative kinase; P-loop 93.9 0.033 1.1E-06 48.2 3.4 22 116-137 6-27 (193)
350 3t61_A Gluconokinase; PSI-biol 93.9 0.031 1.1E-06 49.2 3.2 22 116-137 19-40 (202)
351 1z47_A CYSA, putative ABC-tran 93.9 0.03 1E-06 54.4 3.3 24 116-139 42-65 (355)
352 2yyz_A Sugar ABC transporter, 93.8 0.032 1.1E-06 54.3 3.3 24 116-139 30-53 (359)
353 2cdn_A Adenylate kinase; phosp 93.8 0.042 1.4E-06 48.3 3.8 24 114-137 19-42 (201)
354 3h4m_A Proteasome-activating n 93.8 0.18 6.2E-06 46.6 8.4 22 116-137 52-73 (285)
355 1rz3_A Hypothetical protein rb 93.8 0.035 1.2E-06 49.0 3.3 24 114-137 21-44 (201)
356 2kjq_A DNAA-related protein; s 93.8 0.026 8.8E-07 47.6 2.3 23 116-138 37-59 (149)
357 1nks_A Adenylate kinase; therm 93.8 0.033 1.1E-06 48.1 3.1 21 117-137 3-23 (194)
358 3vaa_A Shikimate kinase, SK; s 93.7 0.037 1.3E-06 48.7 3.3 22 116-137 26-47 (199)
359 2it1_A 362AA long hypothetical 93.7 0.034 1.2E-06 54.2 3.3 24 116-139 30-53 (362)
360 2jaq_A Deoxyguanosine kinase; 93.7 0.035 1.2E-06 48.5 3.1 21 117-137 2-22 (205)
361 3cm0_A Adenylate kinase; ATP-b 93.7 0.036 1.2E-06 47.8 3.1 22 116-137 5-26 (186)
362 1g29_1 MALK, maltose transport 93.7 0.035 1.2E-06 54.4 3.3 24 116-139 30-53 (372)
363 1odf_A YGR205W, hypothetical 3 93.7 0.036 1.2E-06 52.3 3.3 24 114-137 30-53 (290)
364 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.03 1E-06 53.9 2.8 22 117-138 173-194 (330)
365 3rlf_A Maltose/maltodextrin im 93.6 0.035 1.2E-06 54.4 3.3 24 116-139 30-53 (381)
366 3tqc_A Pantothenate kinase; bi 93.6 0.037 1.3E-06 53.0 3.3 24 114-137 91-114 (321)
367 1uf9_A TT1252 protein; P-loop, 93.6 0.041 1.4E-06 48.1 3.4 25 114-138 7-31 (203)
368 1v43_A Sugar-binding transport 93.6 0.036 1.2E-06 54.2 3.3 24 116-139 38-61 (372)
369 2v1u_A Cell division control p 93.6 0.21 7.2E-06 47.9 8.8 24 115-138 44-67 (387)
370 2gza_A Type IV secretion syste 93.6 0.033 1.1E-06 54.2 3.0 23 116-138 176-198 (361)
371 3n70_A Transport activator; si 93.6 0.057 2E-06 44.9 4.1 22 116-137 25-46 (145)
372 2yvu_A Probable adenylyl-sulfa 93.5 0.051 1.7E-06 47.1 3.9 24 114-137 12-35 (186)
373 2c95_A Adenylate kinase 1; tra 93.5 0.044 1.5E-06 47.6 3.5 23 115-137 9-31 (196)
374 2vp4_A Deoxynucleoside kinase; 93.5 0.04 1.4E-06 49.8 3.3 25 114-138 19-43 (230)
375 1lw7_A Transcriptional regulat 93.5 0.031 1.1E-06 54.3 2.7 25 115-139 170-194 (365)
376 3kta_A Chromosome segregation 93.5 0.046 1.6E-06 47.0 3.5 23 115-137 26-48 (182)
377 2ewv_A Twitching motility prot 93.5 0.035 1.2E-06 54.3 3.0 25 114-138 135-159 (372)
378 4e22_A Cytidylate kinase; P-lo 93.5 0.046 1.6E-06 50.2 3.6 22 115-136 27-48 (252)
379 2v54_A DTMP kinase, thymidylat 93.4 0.047 1.6E-06 47.8 3.5 24 115-138 4-27 (204)
380 1nn5_A Similar to deoxythymidy 93.4 0.047 1.6E-06 48.2 3.5 23 115-137 9-31 (215)
381 3trf_A Shikimate kinase, SK; a 93.4 0.045 1.6E-06 47.2 3.3 22 116-137 6-27 (185)
382 1aky_A Adenylate kinase; ATP:A 93.3 0.048 1.6E-06 48.7 3.4 23 115-137 4-26 (220)
383 3fb4_A Adenylate kinase; psych 93.3 0.045 1.5E-06 48.6 3.1 21 117-137 2-22 (216)
384 2vli_A Antibiotic resistance p 93.3 0.036 1.2E-06 47.7 2.4 23 114-136 4-26 (183)
385 1p9r_A General secretion pathw 93.2 0.04 1.4E-06 54.8 3.0 25 114-138 166-190 (418)
386 3gd7_A Fusion complex of cysti 93.2 0.044 1.5E-06 53.9 3.3 24 116-139 48-71 (390)
387 4b4t_H 26S protease regulatory 93.2 0.28 9.6E-06 49.1 9.0 22 117-138 245-266 (467)
388 3d31_A Sulfate/molybdate ABC t 93.2 0.031 1.1E-06 54.2 2.0 24 116-139 27-50 (348)
389 1ukz_A Uridylate kinase; trans 93.1 0.069 2.4E-06 46.8 4.1 23 115-137 15-37 (203)
390 3qf7_A RAD50; ABC-ATPase, ATPa 93.1 0.18 6.1E-06 49.0 7.4 22 115-136 23-44 (365)
391 3dl0_A Adenylate kinase; phosp 93.1 0.049 1.7E-06 48.3 3.1 21 117-137 2-22 (216)
392 3zq6_A Putative arsenical pump 93.1 3.8 0.00013 38.6 16.7 87 192-280 216-316 (324)
393 1zd8_A GTP:AMP phosphotransfer 93.0 0.053 1.8E-06 48.7 3.2 21 116-136 8-28 (227)
394 2x8a_A Nuclear valosin-contain 93.0 0.04 1.4E-06 51.4 2.4 21 118-138 47-67 (274)
395 2pez_A Bifunctional 3'-phospho 93.0 0.058 2E-06 46.4 3.3 23 115-137 5-27 (179)
396 2chg_A Replication factor C sm 92.9 0.18 6.3E-06 43.8 6.7 21 117-137 40-60 (226)
397 1gvn_B Zeta; postsegregational 92.9 0.061 2.1E-06 50.5 3.5 24 114-137 32-55 (287)
398 1f2t_A RAD50 ABC-ATPase; DNA d 92.8 0.06 2.1E-06 45.3 3.1 22 115-136 23-44 (149)
399 1oxx_K GLCV, glucose, ABC tran 92.8 0.03 1E-06 54.4 1.3 24 116-139 32-55 (353)
400 2bwj_A Adenylate kinase 5; pho 92.8 0.054 1.8E-06 47.1 2.9 22 116-137 13-34 (199)
401 4b4t_K 26S protease regulatory 92.8 0.11 3.9E-06 51.6 5.5 22 117-138 208-229 (428)
402 2iyv_A Shikimate kinase, SK; t 92.7 0.053 1.8E-06 46.8 2.7 21 117-137 4-24 (184)
403 2oap_1 GSPE-2, type II secreti 92.7 0.051 1.7E-06 55.5 2.9 22 117-138 262-283 (511)
404 1d2n_A N-ethylmaleimide-sensit 92.7 0.18 6.2E-06 46.4 6.5 25 114-138 63-87 (272)
405 1via_A Shikimate kinase; struc 92.7 0.053 1.8E-06 46.4 2.7 21 117-137 6-26 (175)
406 1ixz_A ATP-dependent metallopr 92.7 0.047 1.6E-06 49.8 2.4 21 118-138 52-72 (254)
407 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.054 1.8E-06 48.2 2.7 23 116-138 24-46 (235)
408 3k9g_A PF-32 protein; ssgcid, 92.6 0.28 9.4E-06 45.0 7.6 66 162-238 144-209 (267)
409 1qf9_A UMP/CMP kinase, protein 92.6 0.082 2.8E-06 45.5 3.8 22 116-137 7-28 (194)
410 1zak_A Adenylate kinase; ATP:A 92.6 0.06 2.1E-06 48.1 2.9 22 116-137 6-27 (222)
411 2pt5_A Shikimate kinase, SK; a 92.6 0.067 2.3E-06 45.3 3.1 21 117-137 2-22 (168)
412 4b4t_I 26S protease regulatory 92.5 0.36 1.2E-05 47.9 8.7 22 117-138 218-239 (437)
413 1gtv_A TMK, thymidylate kinase 92.5 0.031 1.1E-06 49.4 0.9 21 117-137 2-22 (214)
414 2pbr_A DTMP kinase, thymidylat 92.5 0.068 2.3E-06 46.2 3.1 21 117-137 2-22 (195)
415 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.051 1.7E-06 54.7 2.5 25 114-138 137-161 (460)
416 1vht_A Dephospho-COA kinase; s 92.4 0.073 2.5E-06 47.3 3.3 22 116-137 5-26 (218)
417 3tlx_A Adenylate kinase 2; str 92.4 0.073 2.5E-06 48.5 3.3 23 115-137 29-51 (243)
418 3ug7_A Arsenical pump-driving 92.4 6.4 0.00022 37.6 17.3 85 196-282 237-333 (349)
419 2z0h_A DTMP kinase, thymidylat 92.3 0.075 2.6E-06 46.1 3.1 21 117-137 2-22 (197)
420 3ozx_A RNAse L inhibitor; ATP 92.3 0.088 3E-06 54.0 4.1 23 117-139 27-49 (538)
421 2p5t_B PEZT; postsegregational 92.2 0.062 2.1E-06 49.3 2.6 24 114-137 31-54 (253)
422 1cr0_A DNA primase/helicase; R 92.2 0.071 2.4E-06 49.9 3.1 23 116-138 36-58 (296)
423 3cf0_A Transitional endoplasmi 92.2 0.23 7.7E-06 46.7 6.6 21 117-137 51-71 (301)
424 1e4v_A Adenylate kinase; trans 92.2 0.076 2.6E-06 47.1 3.1 21 117-137 2-22 (214)
425 1yqt_A RNAse L inhibitor; ATP- 92.1 0.073 2.5E-06 54.7 3.3 24 116-139 48-71 (538)
426 3b9p_A CG5977-PA, isoform A; A 92.1 0.71 2.4E-05 42.8 9.9 22 116-137 55-76 (297)
427 3umf_A Adenylate kinase; rossm 92.0 0.11 3.7E-06 46.8 4.0 24 114-137 28-51 (217)
428 2f6r_A COA synthase, bifunctio 92.0 0.1 3.5E-06 48.8 3.9 23 114-136 74-96 (281)
429 2obl_A ESCN; ATPase, hydrolase 92.0 0.072 2.5E-06 51.6 2.9 26 114-139 70-95 (347)
430 3be4_A Adenylate kinase; malar 92.0 0.086 2.9E-06 47.0 3.2 22 116-137 6-27 (217)
431 4b4t_M 26S protease regulatory 92.0 0.14 4.9E-06 51.0 5.1 22 117-138 217-238 (434)
432 1iy2_A ATP-dependent metallopr 92.0 0.065 2.2E-06 49.8 2.4 21 118-138 76-96 (278)
433 1in4_A RUVB, holliday junction 91.9 0.065 2.2E-06 51.3 2.5 23 116-138 52-74 (334)
434 2cvh_A DNA repair and recombin 91.9 0.086 2.9E-06 46.6 3.1 22 116-137 21-42 (220)
435 2ze6_A Isopentenyl transferase 91.9 0.085 2.9E-06 48.5 3.1 21 117-137 3-23 (253)
436 1uj2_A Uridine-cytidine kinase 91.9 0.092 3.1E-06 48.0 3.3 24 114-137 21-44 (252)
437 1e6c_A Shikimate kinase; phosp 91.9 0.083 2.8E-06 44.8 2.9 21 117-137 4-24 (173)
438 1m7g_A Adenylylsulfate kinase; 91.8 0.1 3.5E-06 46.3 3.5 23 115-137 25-47 (211)
439 3b60_A Lipid A export ATP-bind 91.8 0.094 3.2E-06 54.3 3.6 24 116-139 370-393 (582)
440 3euj_A Chromosome partition pr 91.7 0.073 2.5E-06 53.8 2.7 22 116-137 30-51 (483)
441 1ak2_A Adenylate kinase isoenz 91.7 0.11 3.6E-06 47.0 3.5 23 115-137 16-38 (233)
442 3b5x_A Lipid A export ATP-bind 91.6 0.085 2.9E-06 54.7 3.1 24 116-139 370-393 (582)
443 3j16_B RLI1P; ribosome recycli 91.6 0.09 3.1E-06 54.8 3.3 24 116-139 104-127 (608)
444 3r20_A Cytidylate kinase; stru 91.6 0.1 3.5E-06 47.5 3.3 23 114-136 8-30 (233)
445 1zuh_A Shikimate kinase; alpha 91.6 0.1 3.5E-06 44.2 3.1 21 117-137 9-29 (168)
446 2xb4_A Adenylate kinase; ATP-b 91.5 0.099 3.4E-06 46.9 3.1 21 117-137 2-22 (223)
447 3qf4_B Uncharacterized ABC tra 91.4 0.084 2.9E-06 54.9 2.8 25 115-139 381-405 (598)
448 1n0w_A DNA repair protein RAD5 91.4 0.096 3.3E-06 47.0 2.9 23 116-138 25-47 (243)
449 3eie_A Vacuolar protein sortin 91.4 0.38 1.3E-05 45.6 7.3 22 116-137 52-73 (322)
450 1sxj_A Activator 1 95 kDa subu 91.4 0.32 1.1E-05 49.5 7.1 22 116-137 78-99 (516)
451 3bos_A Putative DNA replicatio 91.4 0.12 4E-06 46.1 3.4 23 115-137 52-74 (242)
452 3bk7_A ABC transporter ATP-bin 91.4 0.099 3.4E-06 54.5 3.3 24 116-139 118-141 (607)
453 3nwj_A ATSK2; P loop, shikimat 91.4 0.098 3.4E-06 48.2 2.9 23 115-137 48-70 (250)
454 3sr0_A Adenylate kinase; phosp 91.3 0.11 3.8E-06 46.3 3.2 21 117-137 2-22 (206)
455 2yl4_A ATP-binding cassette SU 91.3 0.094 3.2E-06 54.5 3.1 24 116-139 371-394 (595)
456 3u61_B DNA polymerase accessor 91.3 0.67 2.3E-05 43.6 8.9 98 117-239 50-149 (324)
457 2qmh_A HPR kinase/phosphorylas 91.3 0.15 5E-06 45.3 3.8 29 116-144 35-63 (205)
458 2p65_A Hypothetical protein PF 91.3 0.092 3.1E-06 44.6 2.5 24 115-138 43-66 (187)
459 1q3t_A Cytidylate kinase; nucl 91.3 0.13 4.3E-06 46.5 3.5 25 113-137 14-38 (236)
460 4eaq_A DTMP kinase, thymidylat 91.2 0.13 4.3E-06 46.6 3.5 24 114-137 25-48 (229)
461 1svm_A Large T antigen; AAA+ f 91.2 0.11 3.6E-06 51.0 3.1 22 116-137 170-191 (377)
462 3ozx_A RNAse L inhibitor; ATP 91.2 0.11 3.7E-06 53.4 3.3 23 117-139 296-318 (538)
463 2dpy_A FLII, flagellum-specifi 91.1 0.1 3.5E-06 52.2 2.9 27 113-139 155-181 (438)
464 3qf4_A ABC transporter, ATP-bi 91.0 0.091 3.1E-06 54.5 2.6 24 116-139 370-393 (587)
465 4a82_A Cystic fibrosis transme 91.0 0.09 3.1E-06 54.5 2.5 24 116-139 368-391 (578)
466 3vfd_A Spastin; ATPase, microt 91.0 0.59 2E-05 45.5 8.4 22 116-137 149-170 (389)
467 2w58_A DNAI, primosome compone 90.9 0.14 4.8E-06 44.8 3.3 22 116-137 55-76 (202)
468 2ph1_A Nucleotide-binding prot 90.9 0.67 2.3E-05 42.3 8.2 67 161-238 127-194 (262)
469 1yqt_A RNAse L inhibitor; ATP- 90.8 0.12 4.1E-06 53.1 3.3 24 116-139 313-336 (538)
470 3hu3_A Transitional endoplasmi 90.8 0.27 9.4E-06 49.7 5.9 22 116-137 239-260 (489)
471 3qks_A DNA double-strand break 90.8 0.14 4.6E-06 45.4 3.1 22 115-136 23-44 (203)
472 3tqf_A HPR(Ser) kinase; transf 90.7 0.17 5.7E-06 44.0 3.5 30 117-146 18-47 (181)
473 1xwi_A SKD1 protein; VPS4B, AA 90.6 0.37 1.3E-05 45.8 6.3 22 116-137 46-67 (322)
474 2grj_A Dephospho-COA kinase; T 90.6 0.15 5E-06 44.9 3.1 22 116-137 13-34 (192)
475 1lv7_A FTSH; alpha/beta domain 90.5 0.12 4.3E-06 47.0 2.8 22 117-138 47-68 (257)
476 3ake_A Cytidylate kinase; CMP 90.5 0.15 5.3E-06 44.5 3.3 21 117-137 4-24 (208)
477 3bk7_A ABC transporter ATP-bin 90.4 0.14 4.6E-06 53.4 3.3 24 116-139 383-406 (607)
478 3bfv_A CAPA1, CAPB2, membrane 90.4 0.37 1.3E-05 44.7 5.9 65 163-239 192-257 (271)
479 1nlf_A Regulatory protein REPA 90.1 0.15 5E-06 47.4 2.9 22 116-137 31-52 (279)
480 3exa_A TRNA delta(2)-isopenten 90.0 0.17 6E-06 48.1 3.3 24 115-138 3-26 (322)
481 1qvr_A CLPB protein; coiled co 90.0 0.38 1.3E-05 52.1 6.5 23 116-138 192-214 (854)
482 2b8t_A Thymidine kinase; deoxy 90.0 0.35 1.2E-05 43.7 5.2 22 114-135 11-32 (223)
483 3j16_B RLI1P; ribosome recycli 89.9 0.16 5.4E-06 52.9 3.3 24 117-140 380-403 (608)
484 1ko7_A HPR kinase/phosphatase; 89.8 0.19 6.4E-06 47.9 3.4 29 117-145 146-174 (314)
485 1ltq_A Polynucleotide kinase; 89.7 0.17 6E-06 47.2 3.1 21 117-137 4-24 (301)
486 2zan_A Vacuolar protein sortin 89.7 1.2 4.1E-05 44.3 9.4 22 116-137 168-189 (444)
487 3qkt_A DNA double-strand break 89.6 0.18 6E-06 48.4 3.1 23 114-136 22-44 (339)
488 1njg_A DNA polymerase III subu 89.5 0.2 7E-06 44.1 3.3 21 117-137 47-67 (250)
489 1a7j_A Phosphoribulokinase; tr 89.5 0.13 4.4E-06 48.4 2.0 24 114-137 4-27 (290)
490 3cf2_A TER ATPase, transitiona 89.2 0.41 1.4E-05 51.4 5.8 23 117-139 240-262 (806)
491 3syl_A Protein CBBX; photosynt 89.2 0.26 8.8E-06 46.1 3.9 23 115-137 67-89 (309)
492 1sxj_E Activator 1 40 kDa subu 89.0 0.15 5.3E-06 48.6 2.2 21 117-137 38-58 (354)
493 3d8b_A Fidgetin-like protein 1 89.0 0.63 2.2E-05 44.8 6.6 22 116-137 118-139 (357)
494 4f4c_A Multidrug resistance pr 89.0 0.14 4.8E-06 58.2 2.2 21 117-137 1107-1127(1321)
495 4fcw_A Chaperone protein CLPB; 88.9 0.28 9.7E-06 45.7 4.0 22 116-137 48-69 (311)
496 2ocp_A DGK, deoxyguanosine kin 88.9 0.24 8.1E-06 44.8 3.3 22 116-137 3-24 (241)
497 1e69_A Chromosome segregation 88.8 0.21 7.1E-06 47.5 3.0 23 114-136 23-45 (322)
498 1qhl_A Protein (cell division 88.8 0.033 1.1E-06 50.6 -2.6 23 117-139 29-51 (227)
499 2dr3_A UPF0273 protein PH0284; 88.7 0.25 8.7E-06 44.2 3.4 22 116-137 24-45 (247)
500 2h92_A Cytidylate kinase; ross 88.7 0.22 7.5E-06 44.1 2.8 22 116-137 4-25 (219)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=4.7e-59 Score=453.25 Aligned_cols=296 Identities=36% Similarity=0.591 Sum_probs=266.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhh-hhhHHHHHHH
Q 015083 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (413)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~-~~~~~l~DtpG~~~~~-~~~l~~~~~~ 187 (413)
+++..++.|+|+|+||||||||+|+|++.++.++++.+++|++...++...+ +.++.||||||+.+.. ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4455678999999999999999999999999989999999999999999888 9999999999985422 1556777888
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHH-HHHccccCCCCCEEEEEecCCCC-ChhhHHHHHHHHHhcC-CCccEEEcc
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l-~~~l~~~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~v~~iS 264 (413)
.+..++..+|++|+|+|++++....+..+ .+.++. .+.|+++|+||+|+. ...........+.... .+.+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 88899999999999999998876666665 666666 679999999999998 5555555566665554 567899999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecC--CCeeEEEE
Q 015083 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP--TAKDFIQV 342 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~--~~~~~i~~ 342 (413)
|++|.|+++|++.|.+.++++++.|+.+..++.+.+++++|++||+++..+++|+||++.+.+..|++++ ++.+.|.+
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a 242 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKG 242 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 36789999
Q ss_pred EEEEeeCCcceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcCCc
Q 015083 343 EIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYG 407 (413)
Q Consensus 343 ~~~~~r~~~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g~~ 407 (413)
.++|+|++||.|+||++|++||+|+..||++||++|+++|||+|||||+++||+++..|++|||.
T Consensus 243 ~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~ 307 (308)
T 3iev_A 243 EIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA 307 (308)
T ss_dssp EEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECTTGGGCHHHHHHTTCC
T ss_pred EEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECCCcccCHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999994
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=1.5e-58 Score=448.03 Aligned_cols=292 Identities=37% Similarity=0.563 Sum_probs=263.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.++++|+|+|+||||||||+|+|++.+++++++.++||++.+.+++..++.++.||||||+.. ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 578899999999999999999999999988899999999999888888899999999999854 4456777788888899
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
+..+|++|+|+|++++....+.++++.++....+.|+++|+||+|+..... +......+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998887777887777766223799999999999986554 43333333 45668999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcc-CCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 015083 272 EDIRDWILTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (413)
Q Consensus 272 ~~L~~~l~~~l~~~~~~~~~~~~-t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~ 350 (413)
++|++.|...++++++.|+.+.+ ++.|.+++++|++||+++..+.+++||++.+.+..|++++++.++|.+.++|+|++
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~ 240 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPS 240 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHH
T ss_pred HHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCC
Confidence 99999999999999999999888 99999999999999999999999999999999999998766789999999999999
Q ss_pred cceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcCCcc
Q 015083 351 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 408 (413)
Q Consensus 351 ~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g~~~ 408 (413)
|+.|+||++|.+||+|+.+||++||++|+++|||+|||||+++||+++..|++|||..
T Consensus 241 ~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~ 298 (301)
T 1wf3_A 241 QKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRS 298 (301)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECTTGGGCHHHHHHHTCCC
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECCCcccCHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999964
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=1.5e-55 Score=427.19 Aligned_cols=295 Identities=32% Similarity=0.568 Sum_probs=260.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..++++|+|+|+||||||||+|+|++.++.++++.+++|++...+++..++.++.+|||||+.......+...+...+..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 35778999999999999999999999999888999999999988999989999999999998523444555556666678
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC-hhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
++..+|++++|+|+++ ....+.++++.+.. .+.|+++|+||+|+.. ...+......+....++..++++||++|.|
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 8999999999999988 77777788777765 6899999999999987 455555555565555556799999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 015083 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (413)
Q Consensus 271 v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~ 350 (413)
+++|++.|...++++++.|+.+..++.|.++.++|++|+++++.+.+++||++.+.+..|.++.++.++|.+.++|+|++
T Consensus 162 v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~ 241 (301)
T 1ega_A 162 VDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREG 241 (301)
T ss_dssp HHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHH
T ss_pred HHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999998665678899999999999
Q ss_pred cceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccCHHHHhhcCCccc
Q 015083 351 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGGQ 409 (413)
Q Consensus 351 ~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~~w~~~~~~l~~~g~~~~ 409 (413)
|++|+||++|.+||+|+..||.+||++|+++|+|+|||||+++||+++..|++|||..+
T Consensus 242 ~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~~ 300 (301)
T 1ega_A 242 QKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD 300 (301)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHHHHHHTTC-----
T ss_pred ceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccCHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999643
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.8e-24 Score=219.63 Aligned_cols=165 Identities=25% Similarity=0.313 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+|+|+||||||||+|+|++.+.+++++.+++|++...+.+.+++..+.+|||||+.......+...+...+..++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999999988899999999999999999999999999999975333333445566778888999
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
||++|+|+|++.+....+.++...++. .++|+++|+||+|+..... ......+.. .++.+++++||++|.|+++|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~~-lg~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELYS-LGFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHHh-cCCCCEEEEeccCCCCHHHHH
Confidence 999999999998888777777777766 6899999999999853211 111022222 245578999999999999999
Q ss_pred HHHHhhCCC
Q 015083 276 DWILTKLPL 284 (413)
Q Consensus 276 ~~l~~~l~~ 284 (413)
+.|.+.+++
T Consensus 158 ~~i~~~l~~ 166 (439)
T 1mky_A 158 ETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999988764
No 5
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.4e-23 Score=192.57 Aligned_cols=170 Identities=21% Similarity=0.205 Sum_probs=126.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhh-hhHH---HHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKI-HMLD---SMMMK 187 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~-~~~~~~~l~DtpG~~~~~~-~~l~---~~~~~ 187 (413)
..++|+++|.+|||||||+|+|++.. ...++..+++|+......+. .++..+.+|||||+..... .... ..+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45699999999999999999999987 55678889999887655555 6678999999999743210 0011 11223
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH----HHHHHhc-----CCCc
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK----LEWYEKF-----TDVD 258 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~~~-----~~~~ 258 (413)
........+|++++|+|++++.......+...++. .+.|+++|+||+|+......... ...+... ....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 33333556999999999998877777777777766 68999999999999876553322 2233332 3456
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015083 259 EVIPVSAKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l~~~ 285 (413)
+++++||++|.|+++|+++|.+.++..
T Consensus 186 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 186 TVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred eEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 899999999999999999999988754
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=6.3e-24 Score=184.05 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=116.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+++|.+|+|||||+|+|.+.....+...+++|.+.....+...+..+.+|||||.... ..+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHh
Confidence 4899999999999999999999887667788888888777777778889999999996431 11233344556667899
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
+|++++|+|++++......++...++. .+.|+++|+||+|+...... ...+.. .++.+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELY---LGPLYG-LGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGG---CGGGGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHh---HHHHHh-CCCCCeEEEecccCCChHHHH
Confidence 999999999998877766777776665 67999999999999754211 111222 234478999999999999999
Q ss_pred HHHHhhCC
Q 015083 276 DWILTKLP 283 (413)
Q Consensus 276 ~~l~~~l~ 283 (413)
++|.+.+|
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998774
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.90 E-value=1.3e-24 Score=208.90 Aligned_cols=206 Identities=18% Similarity=0.242 Sum_probs=142.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCcee-----eeeCCCC----------------------ceEEE------------
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~-----~vs~~~~----------------------tt~~~------------ 153 (413)
...++|+++|.+|||||||+|+|++..+. .++..|+ +|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35579999999999999999999998875 3444554 33220
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhcccccEEE-EEeeCCCCCchHHH-H
Q 015083 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (413)
Q Consensus 154 ------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~vl-~VvD~~~~~~~~~~-~ 215 (413)
...+......++.||||||+.+.. ...+...+...+..++..++.++ +|+|++.+....+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111224689999999985421 12233344555667777887665 79999887655442 3
Q ss_pred HHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHH-HHhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 015083 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (413)
Q Consensus 216 l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 292 (413)
+...+.. .+.|+++|+||+|+..... ....... +... .++.+++++||++|.|+++|+++|.+ +.++.|+.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~~~~ 258 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHP 258 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHHHCT
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHhcCC
Confidence 5555554 6789999999999975433 2222111 0000 12457899999999999999999987 345666666
Q ss_pred ccCCchhh---HHHHHHHHHHHHhhcCCCCCcee
Q 015083 293 IVSEHPER---FFVGEIIREKIFMQYRNEVPYAC 323 (413)
Q Consensus 293 ~~t~~~~~---~~~~eiiReki~~~~~~eipys~ 323 (413)
..++.+.+ +.+++++|++++.++++++||..
T Consensus 259 ~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 259 SYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp TTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67777777 88999999999999999999864
No 8
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=9.1e-24 Score=214.28 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=144.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
++|+|+|+||||||||+|+|++...+++++.+++|++.....+.+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999988899999999999999999999999999999974322 22555667778888999
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
||++|+|+|++.+....+.++...++. .++|+++|+||+|+..... ...+.+ . .++.+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-S-LGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-G-GSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-H-cCCCCeEEEeCcCCCChHHHH
Confidence 999999999999988888888887776 7899999999999875321 011111 1 134578999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEEEEEEEe------cCC-CeeEEEEEEEEee
Q 015083 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPT-AKDFIQVEIVVEK 348 (413)
Q Consensus 276 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~v~~~~~------~~~-~~~~i~~~~~~~r 348 (413)
++|.+.+++.+.... .+.+. ++.-..++++|++|.++.+.+.. .++ +...+. ..++.
T Consensus 157 ~~i~~~l~~~~~~~~----~~~~~----------ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~--~~~~~ 220 (436)
T 2hjg_A 157 DAVAEHFKNIPETKY----NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--TSFTY 220 (436)
T ss_dssp HHHHHTGGGCCSSCC----CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC--EEEEE
T ss_pred HHHHHhcCccccccc----cccCc----------EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE--EEEEE
Confidence 999998875321100 01110 22334567777777665443222 122 222222 33456
Q ss_pred CCcceEEeecCCh
Q 015083 349 NSQKIILIGKGGK 361 (413)
Q Consensus 349 ~~~~~i~iG~~g~ 361 (413)
.++...++++.|.
T Consensus 221 ~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 221 NQQEFVIVDTAGM 233 (436)
T ss_dssp TTEEEEETTHHHH
T ss_pred CCeEEEEEECCCc
Confidence 7778889999884
No 9
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.89 E-value=8e-26 Score=235.11 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=160.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee--eeeCCCCceEEEEEEEEeCCC-----------------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPE----------------------------- 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~--~vs~~~~tt~~~~~~~~~~~~----------------------------- 162 (413)
..++|+|+|.+|+|||||+|+|++.++. .++..++|++... +.....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~--i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA--VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE--EECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE--EEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4469999999999999999999999875 5677887765322 111100
Q ss_pred ------------eeEEEEeCCCCchhhhhhHHHH--HHHHHHhhcccccEEEEEeeCCC-CCchHHHHHHHHccccCCCC
Q 015083 163 ------------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACK-APERIDEILEEGVGDHKDKL 227 (413)
Q Consensus 163 ------------~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~~~~~ 227 (413)
.++.||||||+.......+... +...+..++..+|++|+|+|+++ +.......++..++. .+.
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~ 219 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HED 219 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCC
Confidence 3689999999854222112111 33445666789999999999987 355555566666665 578
Q ss_pred CEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHH
Q 015083 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEII 307 (413)
Q Consensus 228 p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eii 307 (413)
|+++|+||+|+....++......+.. .+..++++|.... ++.+++.+++... +.+.+++.+|+
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~~~~-~~~~~~~~~E~- 282 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQPLLV-PDNRRLFELEE- 282 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSCCSS-CTTHHHHHHHH-
T ss_pred CEEEEEECCCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCcccC-CCCHHHHHHHH-
Confidence 99999999999987666555444431 1224455553321 1334455555544 67889999998
Q ss_pred HHHHHhhcCCCCCceeEEE-EEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHHHHHH
Q 015083 308 REKIFMQYRNEVPYACQVN-VVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLA 367 (413)
Q Consensus 308 Reki~~~~~~eipys~~v~-v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~ik~i~ 367 (413)
|++|..+ +++||++.++ +..+..+. ..+.|.+.|+|+|.+|+.|+||++|...+-|.
T Consensus 283 -e~l~~~l-~elP~~~~v~~i~~~~~~~-~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 283 -QDLFRDI-QGLPRHAALRKLNDLVKRA-RLVRVHAYIISYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp -HHHHHHH-HTTGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred -HHHHHHh-hhccHHHHHHHHHHHhccC-CeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence 8999886 8999999998 45555433 45678888999999999999999998876654
No 10
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.89 E-value=1.2e-23 Score=203.70 Aligned_cols=205 Identities=20% Similarity=0.246 Sum_probs=137.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCce-----eeeeCCC---CceEE---------------------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRH--------------------------------- 152 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~-----~~vs~~~---~tt~~--------------------------------- 152 (413)
..++|+|+|++|||||||+|+|+|..+ .+++..| .+++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 456999999999999999999999887 4455555 33332
Q ss_pred -----EEE-------------EEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhcccccEEEEEeeC-CCCC
Q 015083 153 -----RIL-------------GICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDA-CKAP 209 (413)
Q Consensus 153 -----~~~-------------~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~vl~VvD~-~~~~ 209 (413)
.+. .+....+.++.||||||+.... ...+...+...+..++..+|++++|+|+ +.+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 0133345789999999985421 1234455677788889999999999997 4444
Q ss_pred ch-HHHHHHHHccccCCCCCEEEEEecCCCCChhh-HHHHHHH-HHhc-CCCccEEEcccCC---CCCHHHHHHHHHhhC
Q 015083 210 ER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKY---GHGVEDIRDWILTKL 282 (413)
Q Consensus 210 ~~-~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~v~~iSA~~---g~gv~~L~~~l~~~l 282 (413)
.. ....+...+.. .+.|+++|+||+|+..... ....... +... .++.+++++||.+ +.|+.++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 32 22345555555 6899999999999975443 2222211 0011 2334556666666 899999999999999
Q ss_pred CCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCcee
Q 015083 283 PLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (413)
Q Consensus 283 ~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~ 323 (413)
+.+++ |+ +..+..+.+++..+ +|++++.++++++||..
T Consensus 261 ~~~~~-~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~~ 298 (315)
T 1jwy_B 261 KNHPI-YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDLK 298 (315)
T ss_dssp HTCTT-GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hCCCc-cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHHH
Confidence 88877 44 45566667776664 99999999999999864
No 11
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=1.2e-22 Score=207.37 Aligned_cols=161 Identities=27% Similarity=0.266 Sum_probs=99.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+|+|+||||||||+|+|++....++++.++||++.....+..++..+.+|||||+.+ ....+...+.+.+..++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC---------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcc
Confidence 3479999999999999999999998888999999999998888888999999999999743 333344445566777899
Q ss_pred cccEEEEEeeCCCCCch----HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCC
Q 015083 195 NADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~----~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
.||++|+|+|++++... ....+...+ .+.|+++|+||+|+........ +.+... ++.+++++||++|.|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~G 384 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDG 384 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCC
Confidence 99999999999987654 333333333 3689999999999986654422 222222 235899999999999
Q ss_pred HHHHHHHHHhhCC
Q 015083 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++|+++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=4.1e-22 Score=178.07 Aligned_cols=166 Identities=30% Similarity=0.380 Sum_probs=120.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKN 188 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~ 188 (413)
...++|+++|.+|||||||+|+|++.....+++.+++|+....... +.++.+|||||+..... ......+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3456999999999999999999999987777888888876554433 35788999999642111 1111122233
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHH---HHhcCCCccEEEccc
Q 015083 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW---YEKFTDVDEVIPVSA 265 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~v~~iSA 265 (413)
.......+|++++|+|++.+.......+...+.. .+.|+++|+||+|+..........+. .....+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 3334456799999999988776666666666666 58999999999999865544333222 222223458999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.++
T Consensus 176 ~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998775
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=4.7e-23 Score=182.26 Aligned_cols=162 Identities=24% Similarity=0.305 Sum_probs=117.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+++|.+|||||||+|+|++.....++..+++|++.....+..++..+.+|||||+... ...+..........++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHHHHH
Confidence 34899999999999999999999887667888999988877777778888999999997431 12233222334455678
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHcc-ccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015083 195 NADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
.+|++++|+|++++.......++..+. ....+.|+++|+||+|+..... . +... ...+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~-~~~~-~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----G-MSEV-NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----E-EEEE-TTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----h-hhhc-cCCceEEEeCCCCCCHHH
Confidence 999999999998765332222222222 2124799999999999853210 0 0111 235789999999999999
Q ss_pred HHHHHHhhCCC
Q 015083 274 IRDWILTKLPL 284 (413)
Q Consensus 274 L~~~l~~~l~~ 284 (413)
|+++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999988753
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=4.9e-22 Score=183.60 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+.++|+++|.+|||||||+|+|++..+. +...+++|+......+...+..+.+|||||+..................
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 346679999999999999999999999876 6778888888877777777889999999997432111111111112233
Q ss_pred hcccccEEEEEeeCCCCCc---hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH----HHHHHHHhcC-CCccEEEc
Q 015083 192 AGINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFT-DVDEVIPV 263 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~---~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~----~~~~~~~~~~-~~~~v~~i 263 (413)
.+..+|++|+|+|++++.. .....+...++....+.|+++|+||+|+.....+. .....+.... ...+++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4678999999999987643 11222333333322379999999999997543321 1222232222 22589999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 015083 264 SAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~ 283 (413)
||++|.|+++++++|.+.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999998774
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=4.3e-22 Score=178.49 Aligned_cols=165 Identities=23% Similarity=0.272 Sum_probs=108.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh-HHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-l~~~~~~~~~~ 191 (413)
+.++|+++|.+|||||||+|+|++.. ...+++.+++|........ +.++.+|||||+....... ....+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 55699999999999999999999987 4456677777776554333 2379999999974321110 01112222223
Q ss_pred hc---ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEccc
Q 015083 192 AG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~---~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA 265 (413)
++ ..+|++++|+|++++.......+...+.. .+.|+++|+||+|+.....+......+.. .....+++++||
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSS 176 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEc
Confidence 33 44599999999998876666666666655 68999999999999876655433333322 123458999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++|+++|.+.++
T Consensus 177 ~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 177 ETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999999987654
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=8.9e-23 Score=192.62 Aligned_cols=159 Identities=24% Similarity=0.322 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh----hHHHHHHHHHHh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRS 191 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~ 191 (413)
++|+++|.||||||||+|+|+|... .++..|++|.+...+.+..++..+.+|||||+...... ...+.+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4899999999999999999999874 47889999999999988888899999999997543221 333333222211
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
...+|++|+|+|+++. .....+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.|+
T Consensus 81 -~~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi 154 (256)
T 3iby_A 81 -DLEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNIGI 154 (256)
T ss_dssp -HSCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTBSH
T ss_pred -hCCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCCCH
Confidence 2789999999999873 222334444455 58999999999998644322111222322223 48999999999999
Q ss_pred HHHHHHHHhh
Q 015083 272 EDIRDWILTK 281 (413)
Q Consensus 272 ~~L~~~l~~~ 281 (413)
++|+++|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999988
No 17
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=7.4e-24 Score=199.90 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=128.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~-tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~ 189 (413)
.+..+|+|+|++|||||||+|+|++......+..+. +|+......+.+++.++.||||||+.+... ......+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 355699999999999999999999988665555555 788888888888899999999999754221 11112334556
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccC---CCCCEEEEEe-cCCCCChhhHHH---------HHHHHHhcCC
Q 015083 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK---DKLPILLVLN-KKDLIKPGEIAK---------KLEWYEKFTD 256 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~---~~~p~ilV~N-K~Dl~~~~~~~~---------~~~~~~~~~~ 256 (413)
..+++.+|++|+|+|++. ......+++..+.... ...|.++|+| |+|+.... +.. ..........
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCC
Confidence 667899999999999985 5555555544443311 1467777777 99997432 222 1112222221
Q ss_pred ----CccEEEcccCCCCCHHHHHHHHHhhCCCCC-CCCCCCccCCchh
Q 015083 257 ----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 299 (413)
Q Consensus 257 ----~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~-~~~~~~~~t~~~~ 299 (413)
+.+ +++||++|.|+++|+++|.+.++..+ +.|+.+..++.+.
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 223 88999999999999999999988766 6777666655554
No 18
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.5e-23 Score=214.35 Aligned_cols=206 Identities=18% Similarity=0.131 Sum_probs=134.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeC------------------------------CCCceEEEEEEEEeCCC
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPE 162 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~------------------------------~~~tt~~~~~~~~~~~~ 162 (413)
....+|+++|++|+|||||+|+|++....+... .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345699999999999999999999875443221 25777777667777888
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-------CchHHHHHHHHccccCCCC-CEEEEEe
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLN 234 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~l~~~l~~~~~~~-p~ilV~N 234 (413)
.++.||||||+.. +...+..++..||++|+|||++.+ ...+.......+.. .+. |+|+|+|
T Consensus 245 ~~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEE
T ss_pred ceEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEe
Confidence 9999999999633 345567778999999999999875 23344444444444 344 5999999
Q ss_pred cCCCCCh--hhHHHHH----HHHHhcC---CCccEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCC
Q 015083 235 KKDLIKP--GEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYP 290 (413)
Q Consensus 235 K~Dl~~~--~~~~~~~----~~~~~~~---~~~~v~~iSA~~g~gv~~L---------------~~~l~~~l~~~~~~~~ 290 (413)
|+|+... ....... ..+.... ...+++++||++|.|+.++ +..|. .+....+.++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~-~l~~~~p~~~ 392 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLE-NAAFKISKEN 392 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHT-TSCCCCCCSS
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHH-HHhhcccccC
Confidence 9999862 2222112 2222221 1358999999999999864 34443 3332222233
Q ss_pred CCccCCchhhHHHHHHHHHHHHhhcCC----CCCceeEEEEEEEEecCCCee
Q 015083 291 KDIVSEHPERFFVGEIIREKIFMQYRN----EVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 291 ~~~~t~~~~~~~~~eiiReki~~~~~~----eipys~~v~v~~~~~~~~~~~ 338 (413)
+...++.|.++.+.+++ +. ..+-....+|..|..+.|..+
T Consensus 393 p~~~~~~p~r~~V~~v~--------~~~~~~g~g~v~~G~V~~G~lk~Gd~v 436 (611)
T 3izq_1 393 EGINKDDPFLFSVLEII--------PSKKTSNDLALVSGKLESGSIQPGESL 436 (611)
T ss_dssp SCCSCCSCCEEECCEEE--------CCSSSCSSSSEEEEEEEESEECTTCEE
T ss_pred cccccccchhhheeeee--------ccCccCCCeeEEEEEEEeceeccCCEE
Confidence 33345666665554443 22 245566778888888776443
No 19
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.3e-21 Score=174.59 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=111.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+|+|++..+....++.+.+.. .+..++..+.+|||||.. .+..+ +..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQE--SLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 556999999999999999999998776544444443322 233467899999999953 33322 23447
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+... ....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998763 44455555554431 1579999999999997643333333333211 1224789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC
Q 015083 268 GHGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
|.|+++++++|.+.+...++..|
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp TBTHHHHHHHHHHHHCC------
T ss_pred CcCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999876655443
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=6.9e-23 Score=207.82 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=120.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (413)
...+|+++|+||||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+..... ..++....-....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999999888899999999988888888888999999999643211 1122222223445
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh--HHHHHHHHHh---cCCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~v~~iSA~ 266 (413)
++..||++|+|+|++++...++..+...+.. .++|+++|+||+|+..... ..+....+.. .....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 6789999999999999887776666666555 6899999999999975432 1222222222 1234689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++|++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=1.3e-23 Score=217.31 Aligned_cols=214 Identities=18% Similarity=0.178 Sum_probs=141.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee---------------ee------CCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~---------------vs------~~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
+.++|+|+|++|+|||||+|+|++....+ ++ ...+.|.......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 34589999999999999999997221111 11 1234454444555677889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHH
Q 015083 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~ 249 (413)
+.+ +. ..+..++..+|++|+|+|++++.......++..+.. .++|+++|+||+|+..... +....+
T Consensus 92 ~~d--f~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~~~~~~l~ei~~ 160 (528)
T 3tr5_A 92 HAD--FT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTRPSIELLDEIES 160 (528)
T ss_dssp STT--CC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred chh--HH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHH
Confidence 743 22 236667899999999999999988888888887776 7899999999999975322 111111
Q ss_pred HHHh----------------------------------------------------------------------------
Q 015083 250 WYEK---------------------------------------------------------------------------- 253 (413)
Q Consensus 250 ~~~~---------------------------------------------------------------------------- 253 (413)
.+..
T Consensus 161 ~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~ 240 (528)
T 3tr5_A 161 ILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPF 240 (528)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCC
T ss_pred hhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 1110
Q ss_pred ------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCC-CCCceeEEE
Q 015083 254 ------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRN-EVPYACQVN 326 (413)
Q Consensus 254 ------~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~-eipys~~v~ 326 (413)
...+.|+|++||++|.||++|++.|.+++|.+....+...........+.+.++ |+...+++ .++..+.++
T Consensus 241 ~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VF--Ki~~~~dp~~~g~l~~~R 318 (528)
T 3tr5_A 241 EREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVF--KIQANMDPGHRDRIAFLR 318 (528)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEE--EEEECCC-CCCCEEEEEE
T ss_pred HHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEE--EEecccCccCCceEEEEE
Confidence 112337899999999999999999999998654321111000000111111111 11112355 778899999
Q ss_pred EEEEEecCCCeeEE
Q 015083 327 VVSYKTRPTAKDFI 340 (413)
Q Consensus 327 v~~~~~~~~~~~~i 340 (413)
|.+|+.+.|..+++
T Consensus 319 V~sG~l~~g~~v~~ 332 (528)
T 3tr5_A 319 IASGQYQKGMKAYH 332 (528)
T ss_dssp EEESCEETTEEEEE
T ss_pred EecCeEcCCCEEEe
Confidence 99999887765554
No 22
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.3e-22 Score=207.04 Aligned_cols=165 Identities=28% Similarity=0.390 Sum_probs=119.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
++.++|+|+|+||||||||+|+|++.....+.+.+++|++.....+.+.+..+.+|||||+. .....+...+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID-IGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCC-CcchHHHHHHHHHHHhh
Confidence 45679999999999999999999999988899999999999999999999999999999975 23333455667778888
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+..||++|||+|+..+....+.++.+.++. .++|+++|+||+|+..... ...+.+. .++..++++||++|.|+.
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~--~~~e~~~--lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYS--LGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG--GSSSSEEECCTTTCTTHH
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh--hHHHHHH--cCCCceEEeecccccchH
Confidence 999999999999999998888999988887 7899999999999864321 1111111 134567899999999999
Q ss_pred HHHHHHHhhCCC
Q 015083 273 DIRDWILTKLPL 284 (413)
Q Consensus 273 ~L~~~l~~~l~~ 284 (413)
+|++.+.+.++.
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999988764
No 23
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=1e-21 Score=177.66 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=105.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..+|+++|++|||||||+++|.+..+....++.+.+. ..+..++..+.+|||||. ..+..+ +..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 89 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELTIAGMTFTTFDLGGH--IQARRV-------WKNY 89 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEEETTEEEEEEEECC------CCG-------GGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEEECCEEEEEEECCCc--HhhHHH-------HHHH
Confidence 355699999999999999999999887654444444432 344556789999999995 233222 3455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---------------
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF--------------- 254 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--------------- 254 (413)
+..+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+..+.+...
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELN 169 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccccccc
Confidence 78999999999998763 33444555544331 2579999999999997532223333333211
Q ss_pred CCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 255 ~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
....+++++||++|.|+++++++|.+.+
T Consensus 170 ~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 170 ARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1235799999999999999999998765
No 24
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=5e-22 Score=187.69 Aligned_cols=163 Identities=23% Similarity=0.267 Sum_probs=117.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|+||||||||+|+|++.... ++..+++|.+...+.+...+..+.+|||||+.........+.+...... .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4568999999999999999999998865 7888999999888888888899999999997543322222323222221 1
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015083 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
..+|++++|+|+++.. .... +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~-~~~~-~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-QSLY-LLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCH-HHHH-HHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchh-hHHH-HHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 5899999999998743 2223 3333334 58999999999998543222111122222223 4899999999999999
Q ss_pred HHHHHHhhCC
Q 015083 274 IRDWILTKLP 283 (413)
Q Consensus 274 L~~~l~~~l~ 283 (413)
|+++|.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 25
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.87 E-value=1.6e-22 Score=192.84 Aligned_cols=165 Identities=27% Similarity=0.308 Sum_probs=120.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~ 189 (413)
+..+|+++|++|+|||||+|+|++... .++..+++|.+...+.+...+..+.+|||||+.+... ..+...+...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~- 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-
Confidence 456899999999999999999999984 5889999999999988888889999999999754221 2233332222
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
......+|++|+|+|+++. .. ...+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~-~~-~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNL-ER-NLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGH-HH-HHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCCh-HH-HHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 2224799999999999863 22 2223333334 47999999999998643322111222222223 489999999999
Q ss_pred CHHHHHHHHHhhCCCC
Q 015083 270 GVEDIRDWILTKLPLG 285 (413)
Q Consensus 270 gv~~L~~~l~~~l~~~ 285 (413)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988754
No 26
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=2.5e-22 Score=176.04 Aligned_cols=162 Identities=28% Similarity=0.358 Sum_probs=105.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+++|++|||||||+|+|++.... ++..+++|.+.....+..++..+.+|||||+...........+...... ..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cC
Confidence 468999999999999999999987653 4566777777666666767789999999996432211111122111111 13
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015083 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.+|++++|+|+++. .....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++++
T Consensus 81 ~~~~~i~v~D~~~~-~~~~~~~~~-~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 81 KPDLVVNIVDATAL-ERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp CCSEEEEEEETTCH-HHHHHHHHH-HHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHHHH
T ss_pred CCCEEEEEecCCch-hHhHHHHHH-HHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHHHH
Confidence 79999999999763 222233333 333 57999999999998532211111112222112 47999999999999999
Q ss_pred HHHHHhhCC
Q 015083 275 RDWILTKLP 283 (413)
Q Consensus 275 ~~~l~~~l~ 283 (413)
+++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (165)
T 2wji_A 156 KKAISIAVK 164 (165)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999988763
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=6e-22 Score=173.89 Aligned_cols=160 Identities=23% Similarity=0.243 Sum_probs=101.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+|+|++.......+.++++.......+......+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34689999999999999999999998876667777765444333433445789999999632112211 23457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
..+|++++|+|++++. .....++..+.+.. ..+.|+++|+||+|+.....+ .......... + .+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF-D-CKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-T-SEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-C-CeEEEEecCCC
Confidence 8899999999998653 22333333332211 147999999999999754322 1111222222 2 47999999999
Q ss_pred CCHHHHHHHHHhhC
Q 015083 269 HGVEDIRDWILTKL 282 (413)
Q Consensus 269 ~gv~~L~~~l~~~l 282 (413)
.|+++++++|.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 154 HNVAELFEGVVRQL 167 (175)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 28
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.87 E-value=2.3e-23 Score=208.38 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC---------------------C---CeeEEEEeCCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~---------------------~---~~~~~l~DtpG 172 (413)
+|+|+|.||||||||+|+|++.+ ..++++|+||++...++... + ..++.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 66889999998877775321 1 35799999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC----------chHH-----------------------------
Q 015083 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----------ERID----------------------------- 213 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~----------~~~~----------------------------- 213 (413)
+.... .....+...+..+++.||++++|+|++++. .+..
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 85311 111223334456689999999999998751 0000
Q ss_pred ---------------------------------------------HHHHHHccccCCCCCEEEEEecCCCCChhhHHHHH
Q 015083 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (413)
Q Consensus 214 ---------------------------------------------~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~ 248 (413)
..+...+.. ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000111 258999999999987443344433
Q ss_pred HHHHhcCCCccEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCC-------
Q 015083 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP------- 320 (413)
Q Consensus 249 ~~~~~~~~~~~v~~iSA~~g~gv~~L~~-~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eip------- 320 (413)
+.+... ..+++++||+.+.|+.+|++ .|.+++|.+++.|+.+++++++.+ ++|++||++|..+. +-+
T Consensus 237 ~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g-~~g~~~~i~~ 311 (397)
T 1wxq_A 237 REEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG-STGVQEVINR 311 (397)
T ss_dssp HHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS-SCSHHHHHHH
T ss_pred HHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC-cchHHHHHHH
Confidence 433322 24799999999999999988 899999999999999999887766 77899988877655 211
Q ss_pred --ceeEEEEEEEEecCCCeeEEEEEEEEeeCC--cceEEeecCChHHHHHHHHHHHHHHHHhCCc
Q 015083 321 --YACQVNVVSYKTRPTAKDFIQVEIVVEKNS--QKIILIGKGGKALKLLATAARLDIEDFLQKK 381 (413)
Q Consensus 321 --ys~~v~v~~~~~~~~~~~~i~~~~~~~r~~--~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~ 381 (413)
|...--+.-++..+.... ....+ -...++-++|.++.++....-.++++-|-+-
T Consensus 312 ~~~~~L~li~vft~~~~~~~-------~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a 369 (397)
T 1wxq_A 312 VVFDLLKLIPVYPVHDENKL-------TDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYA 369 (397)
T ss_dssp HHHTTSCEEEEEEESCC------------CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEE
T ss_pred HHHHHhCCeEEEeecccccc-------cCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhh
Confidence 222111222221110000 00111 0123333789999999999999999966544
No 29
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=2.8e-22 Score=204.00 Aligned_cols=162 Identities=28% Similarity=0.375 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.+|+|+|+||||||||+|+|++....++++.+++|++.....+..++..+.+|||||+.+ ....+.....+....++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhc
Confidence 479999999999999999999998888899999999887777777889999999999743 3334444555667778899
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
+|++|+|+|++++.......++..+. ..|+++|+||+|+....... .........+++++||++|.|+++|+
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHH
Confidence 99999999999988776666666553 47999999999998655432 11122234579999999999999999
Q ss_pred HHHHhhCCCCC
Q 015083 276 DWILTKLPLGP 286 (413)
Q Consensus 276 ~~l~~~l~~~~ 286 (413)
++|.+.+....
T Consensus 376 ~~i~~~~~~~~ 386 (462)
T 3geh_A 376 TAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHhccC
Confidence 99999886544
No 30
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=7.1e-22 Score=172.10 Aligned_cols=156 Identities=24% Similarity=0.291 Sum_probs=94.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.+|+++|.+|||||||+|+|++.......+.++++..... .+......+.+|||||. ..+..+ ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCC--ccchhh-------hhhhhhh
Confidence 4899999999999999999999887777777787775322 34445568899999995 333222 3345789
Q ss_pred ccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCCCH
Q 015083 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 196 aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
+|++++|+|++++. .....++..+.+.. ..+.|+++|+||+|+.+...+. .....+....+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Confidence 99999999998653 22333443333221 2579999999999997543222 12222332233 48999999999999
Q ss_pred HHHHHHHHhhC
Q 015083 272 EDIRDWILTKL 282 (413)
Q Consensus 272 ~~L~~~l~~~l 282 (413)
++++++|.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (166)
T 3q72_A 152 QALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=176.00 Aligned_cols=163 Identities=19% Similarity=0.243 Sum_probs=111.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+. ...+..+++.......+......+.+|||||. ..+..+ ...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4569999999999999999999987753 34555666655544445556678999999995 333333 2334
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+..... ......... ..+ .+++++||++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-~~~-~~~~~~Sa~~~ 170 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE-SIG-AIVVETSAKNA 170 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TTT-CEEEECBTTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH-HcC-CEEEEEeCCCC
Confidence 789999999999987642 223333332222124789999999999964322 122223332 233 58999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 015083 269 HGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~ 287 (413)
.|+++++++|.+.++..++
T Consensus 171 ~gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 171 INIEELFQGISRQIPPLDP 189 (192)
T ss_dssp BSHHHHHHHHHHTCC----
T ss_pred cCHHHHHHHHHHHHHhhCC
Confidence 9999999999999876543
No 32
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.87 E-value=7e-21 Score=169.44 Aligned_cols=157 Identities=24% Similarity=0.336 Sum_probs=111.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+++|.+..+....++.+.+.. .+..++..+.+|||||. ..+.. .+..++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQ--RKIRP-------YWRSYF 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSC--GGGHH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 556999999999999999999999877655666664432 23445789999999995 33322 244557
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 8999999999998753 33344555554432 257999999999999765433333332221 11224789999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 162 g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CTTHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998875
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=1.1e-21 Score=171.05 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|++|||||||+|+|++..+.... +..+++.......+...+..+.+|||||. ..+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 4468999999999999999999987654322 23333333333333444678999999995 333333 3344
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++....+....+.|+++|+||+|+...... ......... .+ .+++++||++|
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 153 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NS-LLFMETSAKTS 153 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cC-CeEEEEeCCCC
Confidence 78999999999998753 33334444443332357899999999998643221 222222222 22 47999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015083 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.|+++|+++|.+.+++
T Consensus 154 ~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988764
No 34
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=2.1e-21 Score=174.32 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=108.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHhCCceeee--eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHH
Q 015083 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (413)
Q Consensus 110 ~~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~v--s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~ 187 (413)
.+....++|+|+|.+|||||||+|+|++..+..+ .++.+. ....+...+..+.+|||||.. .+..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~--~~~~~------ 79 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY----NVETFEKGRVAFTVFDMGGAK--KFRGL------ 79 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE----EEEEEEETTEEEEEEEECCSG--GGGGG------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce----eEEEEEeCCEEEEEEECCCCH--hHHHH------
Confidence 3445667999999999999999999999887653 333332 223345678899999999963 33322
Q ss_pred HHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccC--------CCCCEEEEEecCCCCChhhHHHHHHHHHh----
Q 015083 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYEK---- 253 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~--------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---- 253 (413)
+..++..+|++|+|+|++++. .....++..++.... .+.|+++|+||+|+............+..
T Consensus 80 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 80 -WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp -GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 345588999999999998764 344455555443311 27899999999999865332222222210
Q ss_pred cCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 254 ~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.....+++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 112358999999999999999999988764
No 35
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.87 E-value=3.2e-21 Score=173.11 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+++|.+..+....++.+.+ ...+..++..+.+|||||.. .+..+ +..++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHI--QARRL-------WKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSG--GGTTS-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCH--HHHHH-------HHHHH
Confidence 4569999999999999999999988765444444433 34455667999999999963 22222 34557
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc----------CCCccE
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~v 260 (413)
..+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+..+.+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 33444454444321 2579999999999997532223333333221 123479
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+++||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998653
No 36
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=1.8e-21 Score=197.64 Aligned_cols=169 Identities=25% Similarity=0.311 Sum_probs=120.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~l~~~~~~~~~ 190 (413)
...+|+|+|+||||||||+|+|++.....+++.+++|++...+.+..++..+.+|||||+..... ..+.........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45699999999999999999999999888999999999988888888889999999999732111 000000111234
Q ss_pred hhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh--HHHHHHHHHh---cCCCccEEEccc
Q 015083 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~v~~iSA 265 (413)
.++..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+..... .......+.. .....+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 56788999999999998876666666666655 6899999999999975432 2222222211 123468999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 015083 266 KYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~~ 284 (413)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 37
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=2.9e-21 Score=171.55 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=110.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
..+..+|+++|.+|||||||+|+|++..+....++.+.+... +..++..+.+|||||.. .+..+ +..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 84 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQE--SLRSS-------WNT 84 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE----EEETTEEEEEEEESSSG--GGTCG-------GGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE----EEECCEEEEEEECCCCH--hHHHH-------HHH
Confidence 345679999999999999999999998886666666654332 33467899999999963 33222 345
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEccc
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA 265 (413)
++..+|++|+|+|++++. .....++...++.. ..+.|+++|+||+|+............+.. .....+++++||
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccC
Confidence 678999999999998763 34445555554431 267999999999999764222222222211 111237899999
Q ss_pred CCCCCHHHHHHHHHhh
Q 015083 266 KYGHGVEDIRDWILTK 281 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~ 281 (413)
++|.|+++++++|.+.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999864
No 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=2.8e-21 Score=168.11 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=105.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. .....|+.......+.. ....+.+|||||.. .+..+ ...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE--QFTAM-------RDL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC--SSTTH-------HHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH--HHHHH-------HHH
Confidence 4468999999999999999999987653 33344444433333333 35678999999953 33333 233
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+..+++++||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 467899999999998653 22233332222211 157999999999999653322 11222222222345899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015083 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 39
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=1.8e-22 Score=206.37 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (413)
.+|+|+|.||||||||+|+|++....++++.++||++.....+..++..+.+|||||+.......++......++.++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999999888899999999999888888889999999999985122222222223445566889
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHH
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~ 275 (413)
||++|+|+|++++.......+++.+ .++|+++|+||+|+............. . ...+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~--~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-G--TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-T--CSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHh-c--CCCcEEEEECCCCCCHHHHH
Confidence 9999999999887655555555544 468999999999997532222222221 1 22479999999999999999
Q ss_pred HHHHhhCC
Q 015083 276 DWILTKLP 283 (413)
Q Consensus 276 ~~l~~~l~ 283 (413)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99998765
No 40
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=4.6e-21 Score=167.56 Aligned_cols=157 Identities=16% Similarity=0.229 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+|+|++..+....++. ......+..++..+.+|||||.. .+..+ +..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTI----GFNVETVTYKNLKFQVWDLGGLT--SIRPY-------WRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS----SEEEEEEEETTEEEEEEEECCCG--GGGGG-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC----ccceEEEEECCEEEEEEECCCCh--hhhHH-------HHHHh
Confidence 4569999999999999999999887764222222 22233445568899999999963 33222 34567
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++++. .....++...+.... .+.|+++|+||+|+............+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998763 444555555544321 57899999999999765333333332221 11123799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 153 GTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=6.5e-22 Score=201.75 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (413)
...+|+++|++|+|||||+|+|++.....+++.+++|++.....+..++..+.+|||||+..... ...+.........
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 45699999999999999999999998888899999999988777888888999999999743210 1112222233445
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHHHhc---CCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~---~~~~~v~~iSA~ 266 (413)
++..||++|+|+|++.+...++..+...+.. .++|+++|+||+|+.... ...+..+.+... ....+++++||+
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 351 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence 6789999999999999988888888877776 789999999999997532 222233333332 235689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++|++.|.+.+..
T Consensus 352 ~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 42
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=2.3e-22 Score=184.62 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=116.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
..+..+|+++|.+|||||||+|+|+... .....++++++.......+...+..+.+|||||. ..+..+. .
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~ 82 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLR-------D 82 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCC-------H
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHH-------H
Confidence 3455699999999999999999955433 4445788888888777777767788999999994 3333332 2
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
.++..+|++|+|+|++++. .....++..+.+. ..+.|+++|+||+|+................ + .+++++||++|
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~ 159 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-N-LQYYDISAKSN 159 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHH-T-CEEEECBGGGT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHc-C-CEEEEEeCCCC
Confidence 3467999999999998753 2233333333322 2579999999999997533221111112221 2 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCC
Q 015083 269 HGVEDIRDWILTKLPLGPAY 288 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~~ 288 (413)
.|+++++++|.+.+...++.
T Consensus 160 ~gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp BTTTHHHHHHHHHHHTCTTC
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999987655443
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=4.2e-21 Score=166.82 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|||||||+|+|++..+.. ..| |.......+...+..+.+|||||.. .+.. .+..++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD--KIRP-------LWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCG--GGHH-------HHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCCh--hhHH-------HHHHHhccC
Confidence 79999999999999999998776542 222 2222233455677899999999953 3222 244558899
Q ss_pred cEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCCCCC
Q 015083 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (413)
Q Consensus 197 D~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~g 270 (413)
|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 33444555544321 2578999999999997643322222222211 1124689999999999
Q ss_pred HHHHHHHHHhhCC
Q 015083 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++++++|.+.+.
T Consensus 149 i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 149 LYEGLDWLSNQLR 161 (164)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 44
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=1.2e-21 Score=172.65 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+.++|+++|.+|||||||+|+|++..+. ....+++|.+.....+..++..+.+|||||.. .+..+ ...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~ 75 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARG 75 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHH
Confidence 35679999999999999999999988765 33444455444344455677889999999953 33222 2345
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcC-------CCccEEEccc
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSA 265 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~v~~iSA 265 (413)
+..+|++|+|+|++++........+..+.. .+.|+++|+||+|+..... ......+.... ...+++++||
T Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp CCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 788999999999988765444444444444 5799999999999976321 12222222211 1147999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++|+++|.+.+.
T Consensus 153 ~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999987654
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=2.4e-21 Score=169.04 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+.. ..+..+++.......+......+.+|||||+. .+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE--RFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch--hhhcc-------cHhh
Confidence 44689999999999999999999877532 23444555444444444445789999999963 33332 2334
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|++++.. ....++..+........|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 789999999999987542 2223332222221267899999999999753322 122222322223 489999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015083 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++|+++|.+.++
T Consensus 155 ~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 155 NINELFIEISRRIP 168 (170)
T ss_dssp SHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998875
No 46
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=170.76 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=110.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..+|+++|.+|||||||+|+|++...... ... .|.......+..++..+.+|||||.. .+..+ +..+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~ 87 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-NIL-PTIGFSIEKFKSSSLSFTVFDMSGQG--RYRNL-------WEHY 87 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS-SCC-CCSSEEEEEEECSSCEEEEEEECCST--TTGGG-------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC-CcC-CccceeEEEEEECCEEEEEEECCCCH--HHHHH-------HHHH
Confidence 3556999999999999999999998873221 222 23333444556677899999999953 33322 3455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHHHHHHHH--hcC-CCccEEEcc
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT-DVDEVIPVS 264 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~-~~~~v~~iS 264 (413)
+..+|++|+|+|++++. .....++...+.... .+.|+++|+||+|+............+. ... ...+++++|
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 78999999999998752 334455555444322 4789999999999976433333333332 111 234799999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015083 265 AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~ 283 (413)
|++|.|+++++++|.+.+.
T Consensus 168 a~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=3.1e-21 Score=170.42 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs-~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHHH
Confidence 4568999999999999999999987764321 22233333222223334568999999995 333333 2334
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 159 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NG-LFFMETSAKTA 159 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCSSSC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cC-CEEEEEECCCC
Confidence 788999999999987532 2333333333322257899999999999754322 222222222 23 47999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 015083 269 HGVEDIRDWILTKLPLG 285 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~ 285 (413)
.|+++++++|.+.+...
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988754
No 48
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.86 E-value=1e-20 Score=169.10 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+|+|++..+.. ....|.... ...+...+..+.+|||||. ..+.. .+..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGFN-MRKITKGNVTIKLWDIGGQ--PRFRS-------MWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEE-EEEEEETTEEEEEEEECCS--HHHHT-------THHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCcee-EEEEEeCCEEEEEEECCCC--HhHHH-------HHHHHH
Confidence 45689999999999999999999877641 112222111 2234567889999999995 22222 234457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998753 33445555554432 157999999999999754322222222221 11234789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998763
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.3e-21 Score=171.16 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+......+.++.+.....+..++ ..+.+|||||. ..+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 4569999999999999999999988775333344444444433333333 58899999995 2222 23556
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ .......... + .+++++||++
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 157 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-G-LPFMETSAKT 157 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-T-CCEEECCTTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc-C-CeEEEEeCCC
Confidence 688999999999998753 22233333332222257899999999999753221 1122222222 3 3799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887653
No 50
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=2.1e-21 Score=184.56 Aligned_cols=166 Identities=33% Similarity=0.358 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+|+|++... .+...+++|.+.....+.+.+..+.+|||||+................ ...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 346899999999999999999999887 578899999998888888888999999999975433332322222221 123
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015083 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
..+|++++|+|+++.. ....++.+.... ...|+++|+||+|+............+....+ .+++++||++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHH-HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcch-hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHH
Confidence 6899999999998742 222223333322 23999999999997543221111222222223 4899999999999999
Q ss_pred HHHHHHhhCCCC
Q 015083 274 IRDWILTKLPLG 285 (413)
Q Consensus 274 L~~~l~~~l~~~ 285 (413)
+++.|...+...
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999876543
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3e-21 Score=172.61 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=110.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+.. ..+..+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 44689999999999999999999877542 1222233333222233344578999999995 333332 3344
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhh-HHHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+..... .......... .+ .+++++||++|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HS-MLFIEASAKTC 162 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cC-CEEEEecCCCC
Confidence 78999999999998753 23334444433321 14789999999999954321 1222222322 23 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCC
Q 015083 269 HGVEDIRDWILTKLPLGPAYYPK 291 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~~~~~ 291 (413)
.|+++++++|.+.+...++.++.
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp TTHHHHHHHHHHHHHTSGGGTCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999988766554443
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=2.5e-21 Score=168.67 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=105.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+|+++|++|||||||+|+|++..+.. ..+..+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 4589999999999999999999877542 2223333333232333334468999999995 333332 34457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCCh---hhH-HHHHHHHHhcCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++++. .....++..+......+.|+++|+||+|+... ..+ ......+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 22333333333332357899999999998643 111 111222222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.++
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998775
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=171.32 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. ....+..+.+.....+...+ ..+.+|||||. ..+..+ ...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHH
Confidence 4469999999999999999999998776 34455555555555555555 68999999994 333222 344
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++.. ....++... .....+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 155 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-IQLFETSAKEN 155 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHH-HHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CCEEECBTTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 5789999999999987532 222333332 2222578999999999986533221 11122222222 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVEEMFNCITELVL 170 (181)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 54
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.86 E-value=2.4e-22 Score=208.74 Aligned_cols=237 Identities=17% Similarity=0.131 Sum_probs=151.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee---------------eeeCCCCceEEEEE------EEEeCCCeeEEEEeCCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRIL------GICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~---------------~vs~~~~tt~~~~~------~~~~~~~~~~~l~DtpG 172 (413)
|-.+|+|+||.++|||||+++|+..... .+++.....+.+.. ..+.|+++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4458999999999999999999632211 12232222222222 23678999999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHH
Q 015083 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~ 249 (413)
+.++. ..+.++++.+|.+|+|||+..|.+.+++.+++.+.. .+.|.++++||+|+...+. +....+
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~ad~~~~~~~i~~ 178 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREALHPLDVMADIEQ 178 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCCCHHHHHHHHHH
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhcchhHhhhhhhh
Confidence 87643 446777899999999999999999999999998888 8999999999999975321 111111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 015083 250 WYE----------------------------------------------------------------------------- 252 (413)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (413)
.+.
T Consensus 179 ~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 179 HLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp HHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCC
T ss_pred hcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCch
Confidence 110
Q ss_pred -----hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEE
Q 015083 253 -----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVN 326 (413)
Q Consensus 253 -----~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~ 326 (413)
....+.|+++.||++|.|++.|++.|.+++|.+.............+..+.+-++ |+.. ...+..|..+.++
T Consensus 259 ~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vf--Ki~~~~~~~~~Grla~~R 336 (548)
T 3vqt_A 259 DEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVF--KIQANMDKAHRDRMAFLR 336 (548)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEE--EEECC-------CEEEEE
T ss_pred hHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEE--EEEccCCcCCCCeEEEEE
Confidence 0123458999999999999999999999998653211111000000000011000 0100 1125677889999
Q ss_pred EEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHH
Q 015083 327 VVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 327 v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~i 363 (413)
|.+|+.+.|..+++......+|.++.+++.|.+-..+
T Consensus 337 V~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v 373 (548)
T 3vqt_A 337 ICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGV 373 (548)
T ss_dssp EEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSS
T ss_pred EecceecCCCEEEeeccccccccchhhhhcccccccc
Confidence 9999999887777654455667777777777655433
No 55
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=5.5e-21 Score=170.07 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+|+|++.......++.+ .....+..++..+.+|||||.. .+. ..+..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~-------~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQK--SLR-------SYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSH--HHH-------TTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCH--hHH-------HHHHHHh
Confidence 55699999999999999999999877322222222 2223344567899999999952 222 2245668
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+..........+.+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998764 33334555544431 157999999999999765433333333321 11234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+++
T Consensus 164 ~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=6.8e-21 Score=167.62 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=104.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||.. .+. .....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~-------~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE--RFR-------SLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCG--GGH-------HHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCch--hhh-------hhHHH
Confidence 44689999999999999999999876542 2223333333333333343 589999999952 322 23456
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc----CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEccc
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+............+.......+++++||
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSA 155 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeC
Confidence 688999999999998753 22223332222111 157899999999999733221222222222123458999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.+.
T Consensus 156 ~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 156 KDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=3.3e-21 Score=169.92 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=110.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHH
Q 015083 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
+..+..+|+++|.+|||||||+|+|++..+ .....+|+.......+..++ ..+.+|||||.. .+..+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE--EFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--TTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCch--hhHHHH------
Confidence 344667999999999999999999998765 35566666665555555554 578899999953 333332
Q ss_pred HHhhcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcc
Q 015083 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iS 264 (413)
..++..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.....+ ......+....+ .+++++|
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 75 -EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred -HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEec
Confidence 23367899999999998743 22333333332221 257899999999999753322 112222322223 4899999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 015083 265 AKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~~l~ 283 (413)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 58
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=9e-21 Score=170.45 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=107.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..+|+++|.+|||||||+|+|++..+....+ |.......+...+..+.+|||||. ..+..+ +..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 93 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHY 93 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHH
Confidence 355699999999999999999999877653222 222233345567789999999995 233322 3344
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~ 266 (413)
+..+|++|+|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||+
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCC
Confidence 68999999999998763 33444555544331 1479999999999997643333333322211 122468999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015083 267 YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~ 283 (413)
+|.|+++++++|.+.+.
T Consensus 174 ~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTBTHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 99999999999998775
No 59
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=171.45 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=109.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
...+|+++|.+|||||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||. ..+..+ ...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 44689999999999999999999877642 3344445454444444444 67999999995 333333 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 478999999999998753 223333333322222578999999999997543221 12222333333 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 164 ~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 60
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=1.8e-21 Score=179.10 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=106.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+.+..+|+|+|.+|||||||+++++...+... .++.+................+.+|||+| ++.+..+. .
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~-------~ 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLI-------P 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGH-------H
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHH-------H
Confidence 34667999999999999999999998776421 11112111122222334446788999999 45555553 3
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.+++.+|++++|+|.++.. .....|+..+......+.|++||+||+|+...+.+. .....+....+ .++++|||++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAkt 159 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKA 159 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCCC
Confidence 3488999999999998653 344555554443333679999999999997543221 11222222223 4789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.||+++|+.|++.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 61
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=2.6e-21 Score=172.30 Aligned_cols=167 Identities=28% Similarity=0.332 Sum_probs=114.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
++..+|+++|++|||||||+|+|++.... ++..+++|.+.....+..++..+.+|||||............+......
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII- 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-
Confidence 45679999999999999999999997654 5778888888777777878899999999996432111111112111111
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
...+|++++|+|+++ ......++ ..+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 83 ~~~~~~~i~v~d~~~-~~~~~~~~-~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA-LERNLYLT-LQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIE 157 (188)
T ss_dssp HHCCSEEEEEEEGGG-HHHHHHHH-HHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHH
T ss_pred ccCCCEEEEEecchh-HHHHHHHH-HHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCCCHH
Confidence 135899999999875 23333333 33333 57899999999998543221111122222212 479999999999999
Q ss_pred HHHHHHHhhCCCCC
Q 015083 273 DIRDWILTKLPLGP 286 (413)
Q Consensus 273 ~L~~~l~~~l~~~~ 286 (413)
+++++|.+.+....
T Consensus 158 ~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 158 ELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 62
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.85 E-value=7.7e-22 Score=209.75 Aligned_cols=213 Identities=18% Similarity=0.198 Sum_probs=149.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEE----------------------------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~---------------------------------------- 153 (413)
..|+|+++|.+|+|||||+|+|+|..+......+ +|+.+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3469999999999999999999998763222221 22111
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhc-ccccEEEEEeeCCCCCchHHH-H
Q 015083 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-I 215 (413)
Q Consensus 154 ------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~-~~aD~vl~VvD~~~~~~~~~~-~ 215 (413)
...+......++.|+||||+.... ...+...+...+..++ ..+|++|+|+|++.+....+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 111222334579999999996521 1111222222333333 689999999999987765554 5
Q ss_pred HHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHH---hcCCCccEEEcccCCCCCHHHHHHHHHh---hCCCCCCCC
Q 015083 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (413)
Q Consensus 216 l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~v~~iSA~~g~gv~~L~~~l~~---~l~~~~~~~ 289 (413)
+...+.. .+.|+++|+||+|+.+..........-. ...++.+++++||++|.|+++|++.|.+ .++++|++
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 6666665 6899999999999986543221111100 1124568899999999999999999987 47777764
Q ss_pred CCCccCCchhhHHHHHHHHHHHHhhcCCCCCc----------eeEEEEEEEEe
Q 015083 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYKT 332 (413)
Q Consensus 290 ~~~~~t~~~~~~~~~eiiReki~~~~~~eipy----------s~~v~v~~~~~ 332 (413)
+.+++++.++.+++++||+++.++++++|| ++.+.+..+.+
T Consensus 286 --d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 286 --RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp --GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 668899999999999999999999999999 88877776653
No 63
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=1.2e-21 Score=186.46 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=113.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (413)
..+|+++|+||||||||+|+|++... .++..|++|.+...+.+.. +..+.+|||||............+...... ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cC
Confidence 35899999999999999999999764 4788899998887777776 789999999997543222222222222221 14
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015083 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
.+|++++|+|+++. ..... +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++|
T Consensus 80 ~~d~vi~V~D~t~~-e~~~~-~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNL-ERNLY-LTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGH-HHHHH-HHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCch-HhHHH-HHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHHHH
Confidence 79999999999763 22222 2233333 58999999999998543221111122222223 48999999999999999
Q ss_pred HHHHHhhCCC
Q 015083 275 RDWILTKLPL 284 (413)
Q Consensus 275 ~~~l~~~l~~ 284 (413)
+++|.+.+..
T Consensus 155 ~~~i~~~~~~ 164 (272)
T 3b1v_A 155 VKKAAHTTTS 164 (272)
T ss_dssp HHHHHHSCTT
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=5.4e-21 Score=169.89 Aligned_cols=158 Identities=19% Similarity=0.154 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. ...++++.......+..++ ..+.+|||||. ..+..+ ...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHH-------HHH
Confidence 3458999999999999999999987753 4555555555444444444 45788999995 333333 233
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++++|+|++++.. ....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 4678999999999987532 2223333222211 157999999999999754322222333322223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 65
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.85 E-value=3.9e-21 Score=170.40 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+++|++..+. .....++.......+. .....+.+|||||.. .+..+ ...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--DYDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG--GGTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCH--hHHHH-------HHH
Confidence 4568999999999999999999977653 3334444333332333 334567899999963 33222 334
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (413)
++..+|++++|+|++++.. .....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 5789999999999987532 22212333333322489999999999986542211 11112222234
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~ 287 (413)
..+++++||++|.|+++++++|.+.+..+++
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 4589999999999999999999998876543
No 66
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.85 E-value=1.9e-22 Score=199.11 Aligned_cols=213 Identities=19% Similarity=0.226 Sum_probs=139.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-----eeeCCCC----------------------ceEEE-------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------- 153 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-----~vs~~~~----------------------tt~~~------------- 153 (413)
..++|+|+|.+|||||||+|+|+|.++. +++..|+ +|++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998875 4455554 22220
Q ss_pred -----------EEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhcc-cccEEEEEeeCCCCCchHHH-HH
Q 015083 154 -----------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERIDE-IL 216 (413)
Q Consensus 154 -----------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~aD~vl~VvD~~~~~~~~~~-~l 216 (413)
...+......++.||||||+.+.. ...+...+...+..++. .++++++|+|++.+....+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 011122235689999999985421 11222233334444454 45677778888776654443 25
Q ss_pred HHHccccCCCCCEEEEEecCCCCChhh-HHHHHHH--HHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCc
Q 015083 217 EEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW--YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (413)
Q Consensus 217 ~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~--~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~ 293 (413)
++.+.. .+.|+++|+||+|+..... ....... +....++.+++++||++|.|+++|++++.+ +.++.++.+.
T Consensus 190 ~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~f~~~~~ 264 (353)
T 2x2e_A 190 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHPS 264 (353)
T ss_dssp HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHHHHHCTT
T ss_pred HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH---HHHHhccCCc
Confidence 555554 6799999999999975432 2222110 000113457899999999999999999986 2333444444
Q ss_pred cCCchhh---HHHHHHHHHHHHhhcCCCCCc----------eeEEEEEEEE
Q 015083 294 VSEHPER---FFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYK 331 (413)
Q Consensus 294 ~t~~~~~---~~~~eiiReki~~~~~~eipy----------s~~v~v~~~~ 331 (413)
.++.+.+ +.+.+++|++++.++++++|| ++.+.+..+.
T Consensus 265 ~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 265 YRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp TGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555 889999999999999999999 6666655544
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=3.4e-21 Score=169.49 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=107.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||. ..+..+ +.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 81 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IP 81 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HH
Confidence 345699999999999999999999876642 2334444444444444443 58999999995 333332 23
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccC
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
.++..+|++|+|+|++++. .....++.........+.|+++|+||+|+.....+ .......... + .+++++||+
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-N-VMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc-C-CeEEEEeCC
Confidence 3467899999999998643 23334443333222257899999999999643322 1222222222 2 489999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++++|.+.++.
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988753
No 68
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=4.7e-21 Score=175.20 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
...+|+++|.+|||||||+|+|++..+... ....+++..........+. ..+.+|||||. ..+..+.. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------V 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------H
Confidence 445899999999999999999997765432 3344444333322222222 67999999995 33333322 2
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+. .....+.... ..+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTC-CCEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCcEEEEecCCC
Confidence 3678999999999987542 22333333222222468999999999997653322 2222333322 358999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCC
Q 015083 269 HGVEDIRDWILTKLPLGPAYYP 290 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~~~~ 290 (413)
.|+++++++|.+.+.......+
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCB
T ss_pred CCHHHHHHHHHHHHhccccccc
Confidence 9999999999998765544433
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=4.9e-21 Score=167.01 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|++|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||. ..+..+ +..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAYY 73 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHHh
Confidence 589999999999999999999877642 223333333333334433 367899999994 333322 23347
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCH
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv 271 (413)
..+|++++|+|++++. .....++.........+.|+++|+||+|+............+....+ .+++++||++|.|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNV 152 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence 8999999999998753 22333333333222257899999999999532211122222222223 37999999999999
Q ss_pred HHHHHHHHhhCC
Q 015083 272 EDIRDWILTKLP 283 (413)
Q Consensus 272 ~~L~~~l~~~l~ 283 (413)
++++++|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (170)
T 1g16_A 153 NEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 70
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.85 E-value=2.8e-21 Score=171.01 Aligned_cols=161 Identities=24% Similarity=0.249 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+ .....+++.......+..++ ..+.+|||||... +..+ ...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE--YSIF-------PQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT--TCCC-------CGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh--hhHH-------HHH
Confidence 556999999999999999999996664 34445555544444444444 5779999999632 2222 234
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKE 152 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCTTS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-CcEEEEecCC
Confidence 578999999999998643 22233332322221 157999999999999643322 112222222233 4799999999
Q ss_pred CCCHHHHHHHHHhhCCCCC
Q 015083 268 GHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~ 286 (413)
|.|+++++++|.+.+....
T Consensus 153 ~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999998876543
No 71
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=4.4e-21 Score=172.20 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=108.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. ....+|+.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHh
Confidence 4569999999999999999999988753 444455544444444433 356799999994 333322 345
Q ss_pred hcccccEEEEEeeCCCCCchHH--HHHHHHccccCCCCCEEEEEecCCCCChh---hHHHHHHHHHhcCCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
++..+|++|+|+|++++..... ..+...++....+.|+++|+||+|+.... ........+....+...++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 6889999999999987542211 22333333323579999999999987421 111222223332344459999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++++|.+.+..
T Consensus 171 ~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTBSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=9.1e-21 Score=170.19 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=101.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+... ..+..+.+.....+..+ ...+.+|||||. ..+..+ +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HH
Confidence 3456899999999999999999998876532 22223333333333333 367999999995 333322 34
Q ss_pred hhcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCC
Q 015083 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.++..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+ ......+.......+++++||++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 45778999999999987542 2222222221111257999999999999653322 11222333332235899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015083 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.|+++++++|.+.+
T Consensus 174 g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 174 NFNVDEIFLKLVDDI 188 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 73
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=3e-21 Score=167.47 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+.. ....++.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 34689999999999999999999877542 23333333333333333 356899999995 333322 333
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-CCEEEecCCC
Confidence 467899999999998743 22333333332221 157999999999998643222 111122222122 3799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015083 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.|+++++++|.+.+
T Consensus 150 ~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998764
No 74
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=7.1e-21 Score=165.28 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|+|||||+|+|++..+. ....+++.......+..+ ...+.+|||||.. .+..+ ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc--hhHHH-------HHH
Confidence 4568999999999999999999987753 344444444433333333 3579999999952 33222 344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
++..+|++++|+|++++. .....++........ .+.|+++|+||+|+.....+ .......... + .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-N-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCCC
Confidence 577899999999998653 222233333222211 47999999999999653221 2222233222 2 479999999
Q ss_pred CCCCHHHHHHHHHhhC
Q 015083 267 YGHGVEDIRDWILTKL 282 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l 282 (413)
+|.|+++++++|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 75
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.1e-20 Score=191.68 Aligned_cols=152 Identities=17% Similarity=0.172 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeee------------------------------CCCCceEEEEEEEEeCCCe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs------------------------------~~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+|+|++....+.. ...+.|.+.....+...+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4458999999999999999999765432211 1256777777777888889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCc-------hHHHHHHHHccccCCCCC-EEEEEec
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~l~~~l~~~~~~~p-~ilV~NK 235 (413)
++.||||||+. . +...+..++..||++|+|||++++.. .++...+..+.. .+.| +++|+||
T Consensus 96 ~~~iiDTPGh~--~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHK--S-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChH--H-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 99999999953 2 34456666889999999999998763 355555555544 5677 9999999
Q ss_pred CCCCCh----hhHHHHHH----HHHhcC----CCccEEEcccCCCCCHHHHHH
Q 015083 236 KDLIKP----GEIAKKLE----WYEKFT----DVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 236 ~Dl~~~----~~~~~~~~----~~~~~~----~~~~v~~iSA~~g~gv~~L~~ 276 (413)
+|+... ........ .+.... ...+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 11111112 221111 135799999999999999544
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=9.1e-21 Score=173.37 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+. .....|+.......+.. ....+.+|||||. ..+..+ ..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 100 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RP 100 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HH
Confidence 35569999999999999999999987764 23333443333333333 3457899999994 333222 33
Q ss_pred hhcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcC
Q 015083 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFT 255 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-------------~~~~~~~~~ 255 (413)
.++..+|++|+|+|++++.. .....+...++....+.|+++|+||+|+........ ....+....
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 45789999999999987532 121122333332225799999999999976432211 112223333
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 256 DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 256 ~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+..+++++||++|.|+++++++|.+.+.
T Consensus 181 ~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 181 GAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999988764
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.84 E-value=2e-20 Score=167.78 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-------------------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~------------------------------- 162 (413)
+..+|+++|++|||||||+|+|++..+.. ...+.+..+.....+..++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45689999999999999999999887541 1122222222222333332
Q ss_pred --------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEE
Q 015083 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (413)
Q Consensus 163 --------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV 232 (413)
..+.+|||||. ..+..+ +..++..+|++|+|+|++++. .....++..+... .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 78999999994 333332 344578999999999998763 2333344444333 35999999
Q ss_pred EecCCCCChh-hHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 233 LNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 233 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+||+|+.... ........... .+ .+++++||++|.|+++++++|.+.+
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYAQD-NN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHHHH-TT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHHHH-cC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999943211 12233333333 23 4899999999999999999998765
No 78
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=1e-20 Score=166.48 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=105.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 456999999999999999999998776421 122222322222223334468999999994 333322 4445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++.........+.|+++|+||+|+.....+ ......... .+ .+++++||++|
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NG-LLFLEASAKTG 162 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998753 22223333222222257899999999999643222 222223333 23 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 163 ~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 79
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=9.6e-21 Score=167.91 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=105.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHH
Q 015083 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
...+..+|+++|.+|||||||+|+|++..+. .....++..........++ ..+.+|||||. ..+..+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~------ 83 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMR------ 83 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSH------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHH------
Confidence 3445679999999999999999999977553 3444444443344444444 45667999995 3333332
Q ss_pred HHhhcccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEc
Q 015083 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~i 263 (413)
..++..+|++++|+|++++. .....++....+. ...+.|+++|+||+|+.....+ .......... + .+++++
T Consensus 84 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~ 160 (183)
T 3kkq_A 84 -EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-N-IPYIET 160 (183)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-T-CCEEEE
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-C-CeEEEe
Confidence 33467899999999998753 2233333333221 1167899999999998753222 1222222222 3 579999
Q ss_pred ccC-CCCCHHHHHHHHHhhC
Q 015083 264 SAK-YGHGVEDIRDWILTKL 282 (413)
Q Consensus 264 SA~-~g~gv~~L~~~l~~~l 282 (413)
||+ +|.|+++++++|.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 999 9999999999998765
No 80
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=1.1e-20 Score=167.78 Aligned_cols=158 Identities=20% Similarity=0.157 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||.. .+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE--RFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHH
Confidence 45699999999999999999999877642 2233333333333344444 689999999953 322 23556
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|++++.. ....++.........+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 156 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NE-LMFLETSALT 156 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEecCCC
Confidence 7889999999999987532 2233332222221267899999999999643222 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 157 GENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 81
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=166.35 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
.+..+|+++|++|||||||+|+|++..+....++.+.+.. .+..++..+.+|||||.. .+..+ +..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQT--SIRPY-------WRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC------CCTT-------GGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEEECCEEEEEEECCCCH--hHHHH-------HHHH
Confidence 3567999999999999999999998887555555554332 234457899999999963 22222 3455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~ 266 (413)
+..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+... ....+++++||+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998764 33445555555432 2678999999999997643333333332211 112378999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015083 267 YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~ 283 (413)
+|.|+++++++|.+.+.
T Consensus 163 ~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999987653
No 82
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=170.60 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~-~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+|+|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||+. .+..+ +..+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 44689999999999999999999887653322 22333332333334445789999999963 23322 3344
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 173 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-LLFLETSALDST 173 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 789999999999987532 2233443333332357899999999999653221 111222222233 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 015083 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++++|.+.+
T Consensus 174 gi~~l~~~l~~~i 186 (193)
T 2oil_A 174 NVELAFETVLKEI 186 (193)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.5e-21 Score=169.83 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+++|++..+. ....+|+.......+..++ ..+.+|||||.. .+..+ ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhHH-------HHH
Confidence 4458999999999999999999987653 4445555444444444444 678999999953 33222 345
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-------------HHHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (413)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 588999999999998753 22221223333332248999999999999754211 111122222223
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..+++++||++|.|+++++++|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998765
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=1.1e-20 Score=170.96 Aligned_cols=160 Identities=23% Similarity=0.199 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||.. .+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE--RFQSL-------GVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG--GGSCS-------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH--HHHHh-------HHH
Confidence 44689999999999999999999887642 222333334433344433 4689999999953 33222 344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc----CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEccc
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 265 (413)
++..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+............+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998753 22333333322211 146899999999999743222222233332123458999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 85
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=9e-21 Score=172.11 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+++|++..+. ....+++.+.....+..++ ..+.+|||||. ..+..+ ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 4569999999999999999999977653 4455666655555545444 45669999996 333322 344
Q ss_pred hcccccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (413)
++..+|++++|+|++++... ....+...+.....+.|+++|+||+|+........ ....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 68899999999999875422 22123333333225799999999999975433111 1122333345
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998764
No 86
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=9.1e-21 Score=169.24 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|||||||+|+|++..+....++.+.+ ...+..++..+.+|||||.. .+..+ +..++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQT--GVRPY-------WRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSS--SSCCC-------CSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 4569999999999999999999887765433333322 22344467899999999963 22222 33457
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHh---cCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998763 44445555554432 157899999999999765333333222221 11123799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 168 GDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999988764
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1e-20 Score=171.83 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. ....+..+.+.....+..++ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 4469999999999999999999987764 23334444444434444444 68999999995 333322 234
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 478999999999998653 22233333332222247899999999999532211112222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015083 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 88
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=2.1e-20 Score=161.74 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=102.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||+|+|++..+. ....+++.......+.. ....+.+|||||.. .+..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHh
Confidence 458999999999999999999987654 33334443333333333 34568899999953 33322 2334
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|+++... ....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 678999999999986532 2222322222211 147999999999998753222222222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015083 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++++++|.+.+.
T Consensus 151 gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 151 GVEDAFYTLVREIR 164 (166)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 89
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=169.61 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=103.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||. ..+.. .+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRT-------ITQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHH-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHH
Confidence 44689999999999999999999877542 1112222223233333343 68999999995 33332 2445
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+..... ..+... +....++.+++++||++
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~~SA~~ 176 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQS-LAEHYDILCAIETSAKD 176 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HHHHTTCSEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHH-HHHHcCCCEEEEEeCCC
Confidence 578999999999998643 2333344333332225789999999999965322 122222 22333444899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 177 g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 177 SSNVEEAFLRVATELI 192 (201)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 90
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=1.6e-21 Score=196.18 Aligned_cols=164 Identities=28% Similarity=0.404 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
...+|+|+|++|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+.+ +..+.....+.+..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHHH
Confidence 44689999999999999999999999877888999998877766665554 899999999743 333322233446667
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
+..+|++|+|+|+ +.......+...++. .+.|+++|+||+|+...... .....+....+ .+++++||++|.|++
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGFD 184 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTSTT
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 8899999999998 455555666666666 58999999999999865443 23334443334 489999999999999
Q ss_pred HHHHHHHhhCCCC
Q 015083 273 DIRDWILTKLPLG 285 (413)
Q Consensus 273 ~L~~~l~~~l~~~ 285 (413)
+++++|.+.++..
T Consensus 185 eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 185 DIGKTISEILPGD 197 (423)
T ss_dssp THHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999655
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=1.4e-20 Score=168.08 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=105.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+|+++|.+|||||||+|+|++..+... .+..+++..............+.+|||||.. .+..+ +..++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE--RYRTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC--SSCCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH--HHhhh-------HHHhc
Confidence 45899999999999999999998876432 2333333333322333445689999999953 33222 34557
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 8999999999998653 22233333322221257899999999999653221 111222222223 3899999999999
Q ss_pred HHHHHHHHHhhCC
Q 015083 271 VEDIRDWILTKLP 283 (413)
Q Consensus 271 v~~L~~~l~~~l~ 283 (413)
+++++++|.+.+.
T Consensus 172 i~~l~~~l~~~i~ 184 (189)
T 2gf9_A 172 VKQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 92
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=1.8e-20 Score=165.96 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=106.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+. ....+++.......+...+ ..+.+|||||.. .+..+ ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCc--ccHHH-------HH
Confidence 45569999999999999999999987753 4445555444444333333 578999999953 33322 33
Q ss_pred hhcccccEEEEEeeCCCCCc--hHHHHHHHHccccC-CCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEccc
Q 015083 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.++..+|++++|+|+++... ....++..+..... .+.|+++|+||+|+..... .......... .+ .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WN-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CeEEEeCC
Confidence 44778999999999986532 22333333222211 4799999999999865322 2222333333 23 48999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.7e-20 Score=163.75 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=100.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||+|+|++..+.. ....+........ .......+.+|||||.. .+..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSH--QFPAM-------QRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCS--SCHHH-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCch--hhHHH-------HHHh
Confidence 3589999999999999999999876532 1111211111122 22334578999999953 22222 3344
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccc--cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~--~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+..+|++++|+|++++. .....++..+.+. ...+.|+++|+||+|+.....+. .....+....+ .+++++||++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKL 150 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCC
Confidence 67899999999998653 2222232222111 11478999999999986543221 11112222122 4799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+..
T Consensus 151 ~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 151 NHNVKELFQELLNLEKR 167 (172)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998764
No 94
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=6.8e-21 Score=174.39 Aligned_cols=162 Identities=13% Similarity=0.034 Sum_probs=106.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+++|++..+. .....|+....... +......+.+|||||. ..+..+ ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HH
Confidence 34569999999999999999999987764 33344443333333 3334568999999995 333332 34
Q ss_pred hhcccccEEEEEeeCCCCCchHH--HHHHHHccccCCCCCEEEEEecCCCCChh------------hH-HHHHHHHHhcC
Q 015083 191 SAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPG------------EI-AKKLEWYEKFT 255 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~~~~--~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~------------~~-~~~~~~~~~~~ 255 (413)
.++..+|++|+|+|++++..... ..+...++....+.|+++|+||+|+.... .+ ......+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 45889999999999987642211 22333333323579999999999986421 01 11122222223
Q ss_pred CCccEEEcccCCCCC-HHHHHHHHHhhCCCC
Q 015083 256 DVDEVIPVSAKYGHG-VEDIRDWILTKLPLG 285 (413)
Q Consensus 256 ~~~~v~~iSA~~g~g-v~~L~~~l~~~l~~~ 285 (413)
+..++++|||++|.| ++++++.|.+.+...
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 444899999999998 999999999877543
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=2.5e-20 Score=169.80 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|+++|++|||||||+++|++..+. ...+.++..... +..+ +..+.+|||||+. .+.. . .+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~--~~~~---~---~~~ 73 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE--SLRF---Q---LLD 73 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCH--HHHH---H---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCCh--hHHH---H---HHH
Confidence 4569999999999999999999987753 334444433333 3333 5789999999953 2221 0 233
Q ss_pred hhcccccEEEEEeeCCCCCc---hHHHHHHHHccc---cCCCCCEEEEEecCCCCChhhHHHHHHHHH------------
Q 015083 191 SAGINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYE------------ 252 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~---~~~~~l~~~l~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------------ 252 (413)
.++..+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+............+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 153 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA 153 (214)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchh
Confidence 45789999999999986221 122223332221 125789999999999975433222211111
Q ss_pred -----------h-cCC-------------CccEEEcccCCC------CCHHHHHHHHHhhC
Q 015083 253 -----------K-FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (413)
Q Consensus 253 -----------~-~~~-------------~~~v~~iSA~~g------~gv~~L~~~l~~~l 282 (413)
. ..+ ..++++|||++| .||++++++|.+.+
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0 111 346899999999 99999999998753
No 96
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.8e-20 Score=170.17 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||. ..+. .....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 44699999999999999999999876542 2223333333333333333 57999999995 3322 23566
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g 173 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKES 173 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 789999999999998653 22233333322222257899999999999643222 111122222222 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987664
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.83 E-value=2.1e-20 Score=168.80 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=105.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeee-eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~v-s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+|+++|.+|||||||+|+|++..+... .+..+.+..............+.+|||||+. .+. ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE--RYR-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch--hhc-------chHHHhh
Confidence 45899999999999999999999876422 2223333332222233345689999999963 222 2355668
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 270 (413)
..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence 8999999999998753 22233333332221257899999999999753221 111222222223 3899999999999
Q ss_pred HHHHHHHHHhhC
Q 015083 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
+++++++|.+.+
T Consensus 158 i~~l~~~l~~~i 169 (203)
T 1zbd_A 158 VKQTFERLVDVI 169 (203)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 98
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=2e-20 Score=165.05 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=99.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+.. ....+.+|||||. ..+. ....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45689999999999999999999877542 11222222222333333 2468999999994 2222 2345
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHcccc----CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEE
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 262 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~ 262 (413)
.++..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+..... .......+.......++++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 6688999999999998753 22233333322211 15789999999999964321 1122222333223458999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015083 263 VSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 263 iSA~~g~gv~~L~~~l~~~l 282 (413)
+||++|.|+++++++|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 99
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=2.2e-20 Score=164.75 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=99.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+....++.+.. ....+.. ....+.+|||||... ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~--------------~~ 68 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ---YKKEMLVDGQTHLVLIREEAGAPD--------------AK 68 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE---EEEEEEETTEEEEEEEEECSSSCC--------------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee---EEEEEEECCEEEEEEEEECCCCch--------------hH
Confidence 5569999999999999999999988775422322222 2222232 335789999999532 12
Q ss_pred hcccccEEEEEeeCCCCC--chHHHH---HHHHccccCCCCCEEEEEecCCCCC--hh--hHHHHHHHHHhcCCCccEEE
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PG--EIAKKLEWYEKFTDVDEVIP 262 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~---l~~~l~~~~~~~p~ilV~NK~Dl~~--~~--~~~~~~~~~~~~~~~~~v~~ 262 (413)
+++.+|++|+|+|++++. .....+ +.........+.|+++|+||+|+.. .. ............ ...++++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 147 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYE 147 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEE
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEE
Confidence 356899999999998754 222222 2222222125789999999999842 11 112222222222 2358999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 015083 263 VSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 263 iSA~~g~gv~~L~~~l~~~l 282 (413)
+||++|.|+++++++|.+.+
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 100
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=4.1e-21 Score=169.80 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=98.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+++|++..+. ....+|+.......+ ......+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4569999999999999999999987643 333444433222112 223456779999995 333322 345
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-----------HHHHHHHHhcCCCc
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (413)
++..+|++++|+|++++.. .....+...++....+.|+++|+||+|+...... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 5789999999999986532 2221233333332247999999999998654332 11222232223445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 259 ~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988764
No 101
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.83 E-value=6.2e-21 Score=169.13 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=83.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|++|||||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||. ..+. ..+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~ 77 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFR-------TITTAY 77 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhh-------hhHHHH
Confidence 458999999999999999999977653 22233334444333344444 78999999995 2222 224456
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ .......... + .+++++||++|
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~ 155 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-G-IKFMETSAKAN 155 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-T-CEEEECCC---
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-C-CeEEEEeCCCC
Confidence 88999999999998753 22233333332222257899999999999753221 2222222222 3 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++.+|.+.+.
T Consensus 156 ~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 156 INVENAFFTLARDIK 170 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 102
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.83 E-value=4.3e-20 Score=164.94 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=101.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+.... .+..+.+.....+..+ ...+.+|||||. ..+. ...+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~------~~~~~ 88 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFR------KSMVQ 88 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHH------TTTHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhh------hhhhH
Confidence 35569999999999999999999987764322 2222222222222323 368999999995 2222 01234
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccC
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
.++..+|++|+|+|++++. .....++....+.. ..+.|+++|+||+|+.....+ ......+....+ .+++++||+
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 167 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAK 167 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCC
Confidence 4578999999999998643 22333333332221 267999999999999653222 122223333233 379999999
Q ss_pred CC---CCHHHHHHHHHhhCC
Q 015083 267 YG---HGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g---~gv~~L~~~l~~~l~ 283 (413)
+| .|+++++.+|.+.++
T Consensus 168 ~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SGGGGSCHHHHHHHHC----
T ss_pred cCCcccCHHHHHHHHHHHHh
Confidence 99 999999999987764
No 103
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=6.1e-20 Score=163.51 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~-~~~~~~~-----------~~~~~l~DtpG~~~~~~~~l 181 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+....+.. ...+... ...+.+|||||+. .+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--RFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG--GGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH--HHH--
Confidence 45699999999999999999999876532 11121222222 2233333 3589999999962 222
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCc--hHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH--HHHHHHHHhcCC
Q 015083 182 DSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTD 256 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~ 256 (413)
..+..++..+|++|+|+|++++.. ....++..+..... .+.|+++|+||+|+.....+ .......... +
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~ 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY-G 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-C
Confidence 235566889999999999987542 22333333322211 57899999999999653221 1222222222 3
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+++++||++|.|+++++++|.+.+
T Consensus 159 -~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 -IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
No 104
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=168.91 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=103.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+++|++..+ .....+|+.+.....+..++ ..+.+|||||.. .+..+ ...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 87 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD--EFDKL-------RPL 87 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST--TCSSS-------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCH--HHHHH-------hHh
Confidence 556999999999999999999998774 35556666655554555444 467799999963 33322 334
Q ss_pred hcccccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhh------------H-HHHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (413)
++..+|++|+|+|++++... ....+...+.....+.|+++|+||+|+..... + ......+....+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 57899999999999875422 21122222332224799999999999864211 0 111222222224
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
..+++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999987653
No 105
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=4e-20 Score=165.05 Aligned_cols=160 Identities=21% Similarity=0.135 Sum_probs=101.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
.++..+|+++|.+|||||||+|+|++..+. ....+++.......+...+ ..+.+|||||.. .+. ...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~ 86 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYS-------AMR 86 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH--HHH-------HHH
Confidence 345669999999999999999999987653 3344455444444444333 568999999942 222 223
Q ss_pred HhhcccccEEEEEeeCCCCCc--hHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccC
Q 015083 190 RSAGINADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
..++..+|++++|+|+++... ....++..+.... ..+.|+++|+||+|+............+....+ .+++++||+
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 165 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAK 165 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEECCTT
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 455889999999999987542 2222222221111 147999999999998752211111222222223 379999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 015083 267 YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~ 283 (413)
+|.|+++++++|.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 166 TRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 106
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=7.3e-21 Score=171.98 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=106.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+. .....++......... .....+.+|||||.. .+..+ ..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 90 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL-------PY 90 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------CG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------HH
Confidence 35679999999999999999999988765 3344444444343333 445788999999953 22222 34
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccC
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~ 266 (413)
.++..+|++|+|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 169 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-ATFMESSAR 169 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECCTT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-CeEEEEeCC
Confidence 4578999999999998653 22333333333221 1478999999999987443221 11222222223 389999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++++++|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987753
No 107
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.83 E-value=1e-19 Score=179.79 Aligned_cols=166 Identities=25% Similarity=0.372 Sum_probs=119.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|.+|||||||+|+|++... .+...+++|.......+...+..+.+|||||+.+..................
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 556999999999999999999999874 3677788888877777777788999999999855332222211122233344
Q ss_pred ccccEEEEEeeCCCCC----chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~----~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++|+|+|++.+. .....++....... .+.|+++|+||+|+.....+.......... ..+++++||++|.
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKEK--GLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHHT--TCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHhc--CCCeEEEeCCCCc
Confidence 5799999999987643 22333333333221 379999999999998766554443433332 2579999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015083 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++|+++|.+.+.
T Consensus 322 gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 322 GIDLVKEEIIKTLR 335 (357)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 108
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=8.1e-21 Score=170.15 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=108.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
...+|+++|.+|||||||+|+|++..+.. .....+++..............+.+||||| +..+.. ....+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~-------~~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRT-------ITTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHH-------HHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHH-------HHHHH
Confidence 34589999999999999999999866432 223334455544445566778899999999 333332 24455
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+...... ......+....+ .+++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 88999999999998643 22333333332222257899999999998643221 111222222223 389999999999
Q ss_pred CHHHHHHHHHhhC
Q 015083 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++++|.+.+
T Consensus 172 gi~~l~~~l~~~i 184 (191)
T 3dz8_A 172 SVRQAFERLVDAI 184 (191)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=1.7e-20 Score=168.06 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=102.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~-~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+...... .+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 455899999999999999999998776533222 222222222222223468999999994 333333 2334
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ .......... + .+++++||++|
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~ 168 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-G-LIFMETSAKTA 168 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc-C-CEEEEEeCCCC
Confidence 78999999999998753 22233333333222257899999999999643221 1122222222 2 47999999999
Q ss_pred CCHHHHHHHHHhhC
Q 015083 269 HGVEDIRDWILTKL 282 (413)
Q Consensus 269 ~gv~~L~~~l~~~l 282 (413)
.|+++++++|.+.+
T Consensus 169 ~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 169 CNVEEAFINTAKEI 182 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 110
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=1.7e-20 Score=165.20 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+ ..+.+|||||. ..+..+ +.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 45699999999999999999999877531 1112222222233333333 78999999995 333332 33
Q ss_pred hhcccccEEEEEeeCCCCCc--hHHHHHHHHcccc--CCCCC-EEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEc
Q 015083 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~--~~~~p-~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~i 263 (413)
.++..+|++|+|+|++++.. ....++..+.... ..+.| +++|+||+|+.....+ .......... + .+++++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~ 152 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-G-FSSHFV 152 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-C-CcEEEE
Confidence 44789999999999987532 2223332222110 02456 7999999999643221 1122222222 3 479999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 015083 264 SAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
||++|.|+++++++|.+.+...+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999886544
No 111
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=2.4e-20 Score=162.79 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
.+|+++|.+|||||||+|+|++.........+. +.+.....+.. ....+.+|||||... +... ....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~------~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN-SEDTYERRIMVDKEEVTLIVYDIWEQGD--AGGW------LQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCC-cCCeeeEEEEECCeEEEEEEEECCCccc--cchh------hhhhhh
Confidence 489999999999999999999876654333322 23333333333 346788999999632 2110 122235
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
..+|++++|+|++++. .....++........ .+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 152 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHH 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-CcEEEecCccCC
Confidence 6799999999998743 234444444433321 379999999999997432221 22222333333 389999999999
Q ss_pred CHHHHHHHHHhhC
Q 015083 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++++|.+.+
T Consensus 153 ~v~~l~~~l~~~i 165 (169)
T 3q85_A 153 NTRELFEGAVRQI 165 (169)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 112
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.7e-22 Score=211.76 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=90.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeC------------------------------CCCceEEEEEEEEeCCCe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~------------------------------~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+|+|++....+... .+++|.+.....+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 44589999999999999999997543222211 456777777767777788
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-------chHHHHHHHHccccCCCCC-EEEEEec
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~l~~~l~~~~~~~p-~ilV~NK 235 (413)
.+.||||||+.+... .+..++..||++|+|||++.+. ..++...+..+.. .+.| +|+|+||
T Consensus 256 ~i~iiDTPGh~~f~~---------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRDFIS---------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSEEEE---------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHHHHH---------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999743211 1334467899999999998753 5555555555555 4665 9999999
Q ss_pred CCCCC--hhhHHHHHHHHHh----cCCC----ccEEEcccCCCCCHH--------------HHHHHHHhhCC
Q 015083 236 KDLIK--PGEIAKKLEWYEK----FTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 283 (413)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~~----~~~~----~~v~~iSA~~g~gv~--------------~L~~~l~~~l~ 283 (413)
+|+.. ..........+.. ..++ .+++++||++|.|+. .|++.|...++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99975 3332222222222 2233 378999999999998 79999988776
No 113
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=1.7e-20 Score=170.75 Aligned_cols=161 Identities=19% Similarity=0.107 Sum_probs=108.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+++|++..+. ....+|+.+.....+..+ ...+.+|||||.. .+..+ ...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE--DYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC--CCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 4569999999999999999999987653 344445444433333333 3689999999953 33322 344
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH---------HHHHHHHHhcCCCccE
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~v 260 (413)
++..+|++|+|+|++++.. .....+...++....+.|+++|+||+|+...... ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 5889999999999987532 2221233333332247999999999998654321 1222222222344589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCCC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~~~ 285 (413)
+++||++|.|+++++++|.+.+...
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999887543
No 114
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=1.1e-20 Score=185.13 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhh--hhhHHHHHHHHHHhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~ 192 (413)
+.|+++|.||||||||+|+|++.+.. +++++.+|.....+.+...+ ..+.+|||||+.... ...+.. .+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~----~fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGH----QFLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHH----HHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHH----HHHHH
Confidence 37999999999999999999987754 57888999888887777765 789999999974311 122222 23344
Q ss_pred cccccEEEEEeeCCC---CC--chHHHHHHHHccccC---CCCCEEEEEecCCCCChhhHHHHHHHHHh-cCCCccEEEc
Q 015083 193 GINADCIVVLVDACK---AP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEK-FTDVDEVIPV 263 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~---~~--~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~v~~i 263 (413)
+..+|++|+|+|+++ .. ..... +...+.... .++|+++|+||+|+....+. .+.+.. .....+++++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~---~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHHCCSCCCBCCC
T ss_pred HHhccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCHHH---HHHHHHHhhcCCCEEEE
Confidence 567999999999976 22 22222 222232221 47999999999999865421 122222 2222478999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCC--CCCCC
Q 015083 264 SAKYGHGVEDIRDWILTKLPLGPA--YYPKD 292 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~~~~~--~~~~~ 292 (413)
||+++.|+++|+++|.+.+...++ .|+.+
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCccccCCCcc
Confidence 999999999999999999876654 45443
No 115
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.83 E-value=1.2e-20 Score=164.69 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=102.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+.. ....+.+|||||.. .+. .....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~-------~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE--RFH-------ALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcH--hhh-------hhHHH
Confidence 34589999999999999999999876542 22222333333333333 34578999999952 222 22445
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VG-AKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CeEEEecCCC
Confidence 678999999999998753 22233332222211257899999999999653221 222222222 23 4889999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 116
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=167.88 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=99.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
+..+|+++|.+|||||||+|+|++..+.. ..+..+.+.......+......+.+|||||. ..+.. .+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRS-------IAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC--TTCHH-------HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC--cchhh-------hHHHH
Confidence 45699999999999999999999877532 2233333333333333344467999999995 33322 23445
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCCh------hhH-HHHHHHHHhcCCCccEEEc
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEI-AKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~------~~~-~~~~~~~~~~~~~~~v~~i 263 (413)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+... ..+ ......+....+ .+++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 77899999999998753 22233332222211257899999999998521 111 111122222222 479999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 015083 264 SAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~ 283 (413)
||++|.|+++++.+|.+.+.
T Consensus 177 SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 117
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=169.69 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=99.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+... ..+..+.+.....+..++ ..+.+|||||. ..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HHH
Confidence 345899999999999999999998876532 222222222223333333 68999999994 333322 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|++++. .....++.........+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~SA~~ 171 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NE-LMFLETSALT 171 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 478999999999998753 22333433332222257899999999999643222 222222222 22 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 015083 268 GHGVEDIRDWILTKLP 283 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~ 283 (413)
|.|+++++++|.+.+.
T Consensus 172 g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 172 GENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 118
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=2.7e-20 Score=162.01 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=102.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+..+ ...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 44689999999999999999999876542 1122222222222233 23468999999994 333322 233
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++++|+|++++. .....++...... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 150 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-LK-LRFYRTSVKE 150 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEECBTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-cC-CeEEEEecCC
Confidence 478999999999998753 2233333333222 157899999999998653221 222222222 23 3899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015083 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.|+++++++|.+.+
T Consensus 151 ~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKH 165 (168)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=166.98 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=107.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (413)
.+..+|+++|.+|||||||+|+|++..+. ....+++.......+..++ ..+.+|||||.. .+..+ ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChh--hhHHH-------HH
Confidence 45679999999999999999999987753 4455555544444444443 578999999953 33322 33
Q ss_pred hhcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhh--HHHHHHHHHhcCCCccEEEccc
Q 015083 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~v~~iSA 265 (413)
.++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+..... ........... + .+++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-C-CeEEEEeC
Confidence 4467899999999998653 22233333333221 14799999999999975322 22222333322 2 37999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 015083 266 KYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 266 ~~g~gv~~L~~~l~~~l~ 283 (413)
++|.|+++++++|.+.+.
T Consensus 159 ~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=3.6e-20 Score=167.49 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE-EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
...+|+++|.+|||||||+|+|++..+... ..+.++......+ +......+.+|||||. ..+..+ ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 445899999999999999999998776421 1222222221111 2223358899999995 333322 3345
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH-------------HHHHHHhcCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDV 257 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~ 257 (413)
+..+|++|+|+|++++. ......+...++....+.|+++|+||+|+........ ....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 78999999999998643 2222233333333225899999999999976432111 11222222344
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
.+++++||++|.|+++|+++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 121
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6e-20 Score=164.79 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ....+........ .......+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHH
Confidence 44699999999999999999999876542 1112211111122 2333457899999995 333322 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHc--cccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGV--GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l--~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|++++. .....++..+. .....+.|+++|+||+|+............+....+ .+++++||++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKM 154 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-CeEEEEecCC
Confidence 467899999999998643 22222221111 111146899999999999753211111122222122 3799999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 015083 268 GHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~ 285 (413)
|.|+++|+++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988654
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=1.7e-20 Score=167.66 Aligned_cols=158 Identities=20% Similarity=0.131 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeC-------CCCceEEEEEE-----EEeCCCeeEEEEeCCCCchhhhhhH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~-------~~~tt~~~~~~-----~~~~~~~~~~l~DtpG~~~~~~~~l 181 (413)
+..+|+++|.+|||||||++.|.+........ ....|...... .+......+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 44689999999999999998887654332111 01112211111 12233467999999995 333333
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCch--------HHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh
Q 015083 182 DSMMMKNVRSAGINADCIVVLVDACKAPER--------IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~--------~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 253 (413)
...++..+|++|+|+|++++... ...++.. ++....+.|+++|+||+|+.......+......
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~-~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~- 161 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE-YGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD- 161 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHH-TTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHh-hccccCCCCEEEEEEchhcccccCHHHHHHHHH-
Confidence 34458899999999999854211 1122222 222236799999999999976533333333333
Q ss_pred cCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 254 ~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..+..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 33444899999999999999999998765
No 123
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=178.70 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=110.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+|+|.+|||||||+|+|++..+... .| |.......+...+..+.|||||| +..+..+ ...++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 456899999999999999999998886432 22 33344455667789999999999 3344333 33447
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|+++.. .....++...+.... .+.|+++|+||+|+............+... ....+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997653 344455555554421 478999999999998654433333333221 1234789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.||++|+++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 124
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=3.7e-20 Score=167.73 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=105.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|++|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||.. .+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE--RFRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT--TTTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChH--HHHHH-------HHH
Confidence 34589999999999999999999877642 222333323322333333 3589999999953 33222 345
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 155 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDS 155 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998753 22233333322222257899999999999753322 112222222233 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.|+++++.+|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 125
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.2e-20 Score=168.59 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=103.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+++.......+..+ ...+.+|||||.. .+..+ ...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTTT-------GGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 45689999999999999999999877652 22223322222223333 3578999999953 22222 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH-------------HHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~ 256 (413)
++..+|++|+|+|++++. ......+...++....+.|+++|+||+|+......... ...+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998643 22222333333332258999999999999754322111 111222233
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
..+++++||++|.|+++|+++|.+.+.
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 447999999999999999999998764
No 126
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=4.3e-20 Score=189.29 Aligned_cols=160 Identities=24% Similarity=0.328 Sum_probs=113.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCcee------eeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~------~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~ 186 (413)
++..+|+++|++|+|||||+|+|++.... .....++.|.+.....+..++..+.+|||||+. . +.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~--~-------~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA--D-------LI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH--H-------HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH--H-------HH
Confidence 45679999999999999999999987621 123445566655444555677899999999952 2 34
Q ss_pred HHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHH----HHHhc--CCCccE
Q 015083 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE----WYEKF--TDVDEV 260 (413)
Q Consensus 187 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~----~~~~~--~~~~~v 260 (413)
..+...+..+|++|+|+|++++...++...+..++. .+.|.++|+||+|+.+........+ .+... ....++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 556677889999999999999887777666666666 6789999999999987543332222 22221 113589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+++||++|.|+++|+++|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998654
No 127
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.1e-20 Score=165.06 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=102.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+... ...++...... .+......+.+|||||... ..+ ...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~-------~~~ 94 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED---TIQ-------REG 94 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CHH-------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc---ccc-------hhh
Confidence 456999999999999999999998876432 22333222222 2333346799999999643 212 334
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc-CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ .......... + .+++++||+
T Consensus 95 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~ 172 (196)
T 2atv_A 95 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-A-CAFYECSAC 172 (196)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SEEEECCTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh-C-CeEEEECCC
Confidence 467899999999998743 22223332222211 157999999999999653221 1222222222 2 489999999
Q ss_pred CCC-CHHHHHHHHHhhC
Q 015083 267 YGH-GVEDIRDWILTKL 282 (413)
Q Consensus 267 ~g~-gv~~L~~~l~~~l 282 (413)
+|. |+++++++|.+.+
T Consensus 173 ~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 173 TGEGNITEIFYELCREV 189 (196)
T ss_dssp TCTTCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 999 9999999998765
No 128
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=166.17 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
...+|+++|.+|||||||+|+|++..... ...+.++.+.....+..+ ...+.+|||||... +.. .+ ...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~---~~---~~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--AGG---WL---RDH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG--GGH---HH---HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc--chh---hh---HHH
Confidence 45699999999999999999998755432 333444444333333333 45788999999632 221 11 223
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|+++.. .....++..+..... .+.|+++|+||+|+.....+. .....+....+ .+++++||++
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~ 171 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAAL 171 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEEEBTTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-CEEEEEcCCC
Confidence 467899999999998643 334444444332211 479999999999997533221 11222222223 4799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987653
No 129
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.82 E-value=4.9e-20 Score=196.77 Aligned_cols=236 Identities=15% Similarity=0.083 Sum_probs=149.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCcee-----------eeeC------CCCceEEEEEEEEeCCC-------eeEEEEe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------IVTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~-----------~vs~------~~~tt~~~~~~~~~~~~-------~~~~l~D 169 (413)
+..+|+|+|++|+|||||+++|+..... .+.+ ..+.|.......+.+.+ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 4568999999999999999999753211 0111 22334433333344555 8899999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHH-H
Q 015083 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIA-K 246 (413)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~-~ 246 (413)
|||+.+ +...+..++..||++|+|+|++.+...+...++..+.. .+.|+++|+||+|+...+ .+. .
T Consensus 89 TPG~~d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~~~~~~~~~ 157 (704)
T 2rdo_7 89 TPGHVD---------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGANFLKVVNQ 157 (704)
T ss_pred CCCccc---------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccccHHHHHHH
Confidence 999643 22345566789999999999999887777777766655 689999999999986432 110 0
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q 015083 247 KLEWYE-------------------------------------------------------------------------- 252 (413)
Q Consensus 247 ~~~~~~-------------------------------------------------------------------------- 252 (413)
....+.
T Consensus 158 l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~ 237 (704)
T 2rdo_7 158 IKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKY 237 (704)
T ss_pred HHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000000
Q ss_pred -------------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC-------C----ccCCchhhHH
Q 015083 253 -------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-------D----IVSEHPERFF 302 (413)
Q Consensus 253 -------------------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~-------~----~~t~~~~~~~ 302 (413)
....+.|+++.||++|.|++.|++.|..++|.+....+. + .....+...+
T Consensus 238 l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 317 (704)
T 2rdo_7 238 LGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPF 317 (704)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCce
Confidence 001235799999999999999999999999865321100 0 0000011111
Q ss_pred HHHHHHHHHHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecCChHHH
Q 015083 303 VGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALK 364 (413)
Q Consensus 303 ~~eiiReki~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~g~~ik 364 (413)
.+.++ |+ ...+..+..+.++|.+|+.+.|..+++......++.++.+++.|.+...+.
T Consensus 318 ~~~Vf--K~--~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 375 (704)
T 2rdo_7 318 SALAF--KI--ATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIK 375 (704)
T ss_pred EEEEE--EE--EEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcc
Confidence 11111 11 124567888999999999998877665433334455666666665544443
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=3.1e-20 Score=174.23 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC-CceEEEEEEEEeCCCeeEEEEeCCCCchhhhh---hHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNV 189 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~-~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~ 189 (413)
...+|+++|.+|||||||+|+|++.+.......+ ++|+......+.+++.++.+|||||+.+.... .+........
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999999877554433 58888888888888999999999998542211 1112222333
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHcccc----CCCCCEEEEEecCCCCChhh---H-----HHHHHHHHhcCCC
Q 015083 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE---I-----AKKLEWYEKFTDV 257 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~----~~~~p~ilV~NK~Dl~~~~~---~-----~~~~~~~~~~~~~ 257 (413)
......+|++|+|+|+++ ....+..+.+.+... ..+.|+++|+||+|+..... + ............
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~- 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG- 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-
Confidence 344589999999999975 545444444433331 12689999999999965321 1 112222333332
Q ss_pred ccEEEcccCC-----CCCHHHHHHHHHhhCCC-CCCCCCCCcc
Q 015083 258 DEVIPVSAKY-----GHGVEDIRDWILTKLPL-GPAYYPKDIV 294 (413)
Q Consensus 258 ~~v~~iSA~~-----g~gv~~L~~~l~~~l~~-~~~~~~~~~~ 294 (413)
.++.+++.. +.|+.+|++.|.+.++. ++..|+.++.
T Consensus 178 -~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 178 -RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp -CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred -eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 344444333 68999999999999874 6667776643
No 131
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=1e-19 Score=162.57 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=102.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
..+..+|+++|.+|||||||+|+|++..+... ...| .......+..++ ..+.+|||||... +.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---------- 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE--ESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE--LQ---------- 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC--CCTT-CEEEEEEEEETTEEEEEEEEECSSSCC--HH----------
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCC-cceEEEEEEECCEEEEEEEEECCCChh--hh----------
Confidence 34567999999999999999999998776522 2222 222223333444 5678899999532 21
Q ss_pred HhhcccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCC--hhhH-HHHHHHHHhcCCCccEEEc
Q 015083 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIK--PGEI-AKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~--~~~~-~~~~~~~~~~~~~~~v~~i 263 (413)
++..+|++++|+|++++. .....++..+..... .+.|+++|+||+|+.. ...+ ......+....+..+++++
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 356899999999998754 222334433333211 4689999999999842 1111 1122223333344589999
Q ss_pred ccCCCCCHHHHHHHHHhhC
Q 015083 264 SAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l 282 (413)
||++|.|+++++++|.+.+
T Consensus 160 Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 132
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=1.2e-19 Score=163.35 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=103.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015083 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 111 ~~~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
+..+..+|+++|.+|||||||+++|.+......+.....+.......+ ......+.+|||||. ..+..+.- ..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~~ 89 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----DY 89 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----CH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----hc
Confidence 344567999999999999999999988644322222222222222222 255688999999995 33322210 00
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccc---cCCCCCEEEEEecCCCCChhhH-------H-HHHHHHHhc---C
Q 015083 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI-------A-KKLEWYEKF---T 255 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~---~~~~~p~ilV~NK~Dl~~~~~~-------~-~~~~~~~~~---~ 255 (413)
..++..+|++|+|+|++++.......+...+.. ...+.|+++|+||+|+...... . .....+... .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 234678999999999998743333333333222 1258999999999998764321 1 111222221 1
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 256 ~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
...+++++||++ .|+++++..|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 235789999999 99999999998764
No 133
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=7.7e-20 Score=166.94 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=102.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE--EeCC----------CeeEEEEeCCCCchhhhhhH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGP----------EYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~--~~~~----------~~~~~l~DtpG~~~~~~~~l 181 (413)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+..... +... ...+.||||||. ..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--ERFR-- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--HHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--HhHH--
Confidence 44689999999999999999999876531 11111111111111 2222 468999999993 3322
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCc--hHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCC
Q 015083 182 DSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDV 257 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~ 257 (413)
..+..++..+|++|+|+|++++.. ....++..+..... .+.|+++|+||+|+.....+ ......+....+
T Consensus 99 -----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~- 172 (217)
T 2f7s_A 99 -----SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG- 172 (217)
T ss_dssp -----HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-
T ss_pred -----hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC-
Confidence 234556889999999999987532 22223322222211 57899999999999653222 112222222223
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 258 DEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+++++||++|.|+++++++|.+.+.
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999987653
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.82 E-value=7.4e-20 Score=190.99 Aligned_cols=198 Identities=24% Similarity=0.281 Sum_probs=128.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee--------eeCC------CCceEEEEEEEEe-----CCCeeEEEEeCCCCch
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VTNK------PQTTRHRILGICS-----GPEYQMILYDTPGIIE 175 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~~------~~tt~~~~~~~~~-----~~~~~~~l~DtpG~~~ 175 (413)
..+|+|+|++|+|||||+++|+.....+ +.+. .+.|.......+. .....++||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999997632211 1111 1222211111121 2236899999999754
Q ss_pred hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcC
Q 015083 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (413)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (413)
. ...+..++..||++|+|+|++++...++...+..+.. .+.|+++|+||+|+.... .......+....
T Consensus 86 F---------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~l 153 (600)
T 2ywe_A 86 F---------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL 153 (600)
T ss_dssp G---------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS
T ss_pred H---------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhh
Confidence 2 2234555789999999999999987777666655544 689999999999997643 223334444443
Q ss_pred CC--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEe
Q 015083 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKT 332 (413)
Q Consensus 256 ~~--~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~ 332 (413)
++ .+++++||++|.|+++|+++|.+.++.+... + +.|.+. .++. .+.+..|..+.+++.+|+.
T Consensus 154 g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~-~-----~~pl~~--------lV~~~~~d~~~G~v~~~rV~sG~l 219 (600)
T 2ywe_A 154 GLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGD-P-----QKPLKA--------LIFDSYYDPYRGAVAFVRIFDGEV 219 (600)
T ss_dssp CCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCC-T-----TSCCEE--------EEEEEEEETTTEEEEEEEEEESEE
T ss_pred CCCcccEEEEEeecCCCchHHHHHHHHhccccccc-c-----cCCcce--------eEEEEeecccceEEEEEEEEeCEE
Confidence 33 3589999999999999999999999864321 1 111111 0111 2356678888999999998
Q ss_pred cCCCee
Q 015083 333 RPTAKD 338 (413)
Q Consensus 333 ~~~~~~ 338 (413)
+.|..+
T Consensus 220 ~~Gd~I 225 (600)
T 2ywe_A 220 KPGDKI 225 (600)
T ss_dssp CTTCEE
T ss_pred ecCCEE
Confidence 876544
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.82 E-value=1.9e-20 Score=195.82 Aligned_cols=197 Identities=21% Similarity=0.232 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee--------eeC------CCCceEEEEEEEEeC-----CCeeEEEEeCCCCchh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICSG-----PEYQMILYDTPGIIEK 176 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~--------vs~------~~~tt~~~~~~~~~~-----~~~~~~l~DtpG~~~~ 176 (413)
.+|+|+|++|+|||||+++|+.....+ +.+ ..+.|.......+.+ .+..++||||||+.+
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d- 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD- 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH-
Confidence 489999999999999999998632211 111 123333222222222 247899999999744
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 015083 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (413)
+ ...+..++..||++|+|+|++++...++...+..+.. .+.|+++|+||+|+..... ......+....+
T Consensus 84 -F-------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg 152 (599)
T 3cb4_D 84 -F-------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADP-ERVAEEIEDIVG 152 (599)
T ss_dssp -G-------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCH-HHHHHHHHHHTC
T ss_pred -H-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccH-HHHHHHHHHHhC
Confidence 2 2234556788999999999999887766665554444 6789999999999976432 222233333223
Q ss_pred C--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEec
Q 015083 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTR 333 (413)
Q Consensus 257 ~--~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~ 333 (413)
. .+++++||++|.|+++|+++|.+.++.+... .+.|.+.++ +. .+.+.+|..+.+++.+|+.+
T Consensus 153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI--------~d~~~d~~~G~v~~~rV~sG~l~ 218 (599)
T 3cb4_D 153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALI--------IDSWFDNYLGVVSLIRIKNGTLR 218 (599)
T ss_dssp CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEE--------EEEEEETTTEEEEEEEEEESCEE
T ss_pred CCcceEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeee--------eeccccccccEEEEEEEEeCEEe
Confidence 2 3689999999999999999999999864321 122222111 11 23577899999999999887
Q ss_pred CCCee
Q 015083 334 PTAKD 338 (413)
Q Consensus 334 ~~~~~ 338 (413)
.|..+
T Consensus 219 ~Gd~v 223 (599)
T 3cb4_D 219 KGDKV 223 (599)
T ss_dssp SSCEE
T ss_pred cCCEE
Confidence 65443
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=6.3e-20 Score=168.07 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=101.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
...+|+|+|.+|||||||+|+|++....+++..+.++.+.....+..+ ..++.+|||+|.... .. . ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~-----~--l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE-----W--LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH-----H--HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh-----h--HHHH
Confidence 345899999999999999999998665444444443333323333333 346789999995321 11 1 1234
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
+++.+|++|+|+|+++.. .....++..+.+. ...+.|+++|+||+|+.....+. .....+....+ .++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 577899999999998643 2333333333221 11479999999999996432221 11112221122 4789999999
Q ss_pred CCCHHHHHHHHHhhC
Q 015083 268 GHGVEDIRDWILTKL 282 (413)
Q Consensus 268 g~gv~~L~~~l~~~l 282 (413)
|.||++++++|.+.+
T Consensus 187 g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 187 QHNVKELFEGIVRQV 201 (211)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 137
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=2.6e-19 Score=159.27 Aligned_cols=159 Identities=26% Similarity=0.380 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhhHHHHHHHHH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMKNV 189 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~~~ 189 (413)
.+|+++|.+|||||||+|+|++..+. +...+++|......... .+.+|||||+.... ............
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 37999999999999999999998754 45667777654443322 78999999963211 111111111112
Q ss_pred HhhcccccEEEEEeeCCCCCchHHH-----------HHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC-
Q 015083 190 RSAGINADCIVVLVDACKAPERIDE-----------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV- 257 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~-----------~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 257 (413)
......++++++|+|.......... .+...+.. .+.|+++|+||+|+.... ......+....+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHhhhh
Confidence 2225567888888887542111111 12233333 579999999999998653 1112222221121
Q ss_pred -----ccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 258 -----DEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 258 -----~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 25899999999999999999988764
No 138
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=3.7e-20 Score=167.14 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceE-EEEEEEEeCC----CeeEEEEeCCCCchhhhhhHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~-~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
+..+|+++|.+|||||||+|+|++...........|+. +.....+..+ ...+.+|||||+. . +...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~-------~~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--L-------YKEQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--H-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--H-------HHHH
Confidence 34589999999999999999999883333344444443 3333344444 4689999999952 2 2233
Q ss_pred HHhhcccccEEEEEeeCCCCC--chHHHHHHHHccccC---CCCCEEEEEecCCCCC-hhhH--HHHHHHHHhcCCCccE
Q 015083 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI--AKKLEWYEKFTDVDEV 260 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~---~~~p~ilV~NK~Dl~~-~~~~--~~~~~~~~~~~~~~~v 260 (413)
+..++..+|++|+|+|++++. .....++..+..... .+.|+++|+||+|+.. ...+ .......... + .++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~-~~~ 167 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-T-LDF 167 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-T-CEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-C-CEE
Confidence 566789999999999998764 233333333333222 4789999999999976 3222 2222333332 3 489
Q ss_pred EEcccCC-CCCHHHHHHHHHhhCC
Q 015083 261 IPVSAKY-GHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~-g~gv~~L~~~l~~~l~ 283 (413)
+++||++ |.|+++++++|.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 9999999 9999999999988764
No 139
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.7e-19 Score=185.73 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=114.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+|+|.+|||||||+|+|++..+.... .|.......+..++..+.+|||||. ..+..+ +..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~----~T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI----PTVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCC----CCSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcC----CccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 4569999999999999999999988754222 2444555567778899999999994 333333 45568
Q ss_pred ccccEEEEEeeCCCCC--chHHHHHHHHccccC-CCCCEEEEEecCCCCChhhHHHHHHHHHhc---CCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|++++. .....++..+++... .++|+++|+||+|+............+... ....+++++||++
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999998763 334455555544321 579999999999997543333333322211 1234699999999
Q ss_pred CCCHHHHHHHHHhhCCCCC
Q 015083 268 GHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~ 286 (413)
|.||++++++|.+.+....
T Consensus 468 g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TBTHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999987543
No 140
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=1.6e-20 Score=194.30 Aligned_cols=232 Identities=19% Similarity=0.157 Sum_probs=141.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee---------------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~---------------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
+..+|+|+|++|+|||||+++|++....+ +++ ..+.|.......+.+.+..+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 34589999999999999999998643211 111 122222222233566788999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHH
Q 015083 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (413)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~ 249 (413)
+.+ +. ..+..++..+|++|+|+|++++...+...++..++. .+.|+++|+||+|+..... +....+
T Consensus 92 ~~d--f~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~~~~~~~~~i~~ 160 (529)
T 2h5e_A 92 HED--FS-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIRDPMELLDEVEN 160 (529)
T ss_dssp STT--CC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred Chh--HH-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccccHHHHHHHHHH
Confidence 643 22 235567899999999999999988888888777766 6899999999999975322 111111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 015083 250 WYE----------------------------------------------------------------------------- 252 (413)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (413)
.+.
T Consensus 161 ~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~ 240 (529)
T 2h5e_A 161 ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNE 240 (529)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhh
Confidence 100
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC-CccCCchhhHHHHHHHHHHHHhhc-CCCCCceeE
Q 015083 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-DIVSEHPERFFVGEIIREKIFMQY-RNEVPYACQ 324 (413)
Q Consensus 253 ------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~-~~~t~~~~~~~~~eiiReki~~~~-~~eipys~~ 324 (413)
....+.|+|+.||.+|.||+.|++.|.+++|.+...... ..+... ...+.+.++ |+...+ .+..+..+.
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~-~~~~~~~vf--Ki~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEAS-EDKFTGFVF--KIQANMDPKHRDRVAF 317 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTT-CCSCEEEEE--EECSSCCSSSSCCCEE
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCC-CCCeEEEEE--EEeeccCcCCCceEEE
Confidence 011234799999999999999999999999865321100 000000 000011010 010011 234788899
Q ss_pred EEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecC
Q 015083 325 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 359 (413)
Q Consensus 325 v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~ 359 (413)
++|.+|+.+.|..+++.......|.++...+.|.+
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~ 352 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGD 352 (529)
T ss_dssp EEEEESCEETTCEEEETTTTEEEECSCEECCCC--
T ss_pred EEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCC
Confidence 99999998887665543222223444444444433
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=1.2e-19 Score=179.59 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
.|+|+|++|||||||+|+|++... .+++.+++|++...+.+..++..+.+|||||+.......+-..+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999875 57788899988877777878889999999997543222222223 3345568899
Q ss_pred cEEEEEeeCCCCCc---hHHHHHHHHccccC-CCCCEEEEEecCCCCChhhH--HHHH-HHHHhc-CCCccEEEcccCCC
Q 015083 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKL-EWYEKF-TDVDEVIPVSAKYG 268 (413)
Q Consensus 197 D~vl~VvD~~~~~~---~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~--~~~~-~~~~~~-~~~~~v~~iSA~~g 268 (413)
|++++|+|++++.. .....+.+.+.... .+.|+++|+||+|+.+.... .... ...... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987641 11111222222211 57899999999999764311 1111 111222 22236899999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 015083 269 HGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~~~~ 287 (413)
.|+++|+++|.+.+..+++
T Consensus 339 ~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccCC
Confidence 9999999999987765443
No 142
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=2.5e-22 Score=205.52 Aligned_cols=252 Identities=14% Similarity=0.111 Sum_probs=164.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
|+++|+++|++|+|||||+++|++..+. ....++.|.+.....+.+++..+.||||||+. .+..+ +...+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe--~f~~~-------~~~~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHA--AFTSM-------RARGA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT--CCTTS-------BCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcH--HHHHH-------HHHHH
Confidence 6789999999999999999999876543 23345556554444455677889999999953 33322 23457
Q ss_pred ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHH---H-HhcCCCccEEEcccCC
Q 015083 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAKY 267 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~---~-~~~~~~~~v~~iSA~~ 267 (413)
..+|++|+|+|++++...++...+..++. .+.|+++|+||+|+.... .+...... + ..+.+..+++++||++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 89999999999998876666666665555 689999999999997431 11110000 0 1111235899999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCeeEEEEEEEE
Q 015083 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVV 346 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~ 346 (413)
|.|+++|+++|.......+...++ +.+... .+++ ...+..|..+.+.+..|+.+.|..+.+ .
T Consensus 151 G~gI~eLle~I~~~~~~~~~~~~~----~~~~~~--------~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~-----g 213 (501)
T 1zo1_I 151 GTGIDELLDAILLQAEVLELKAVR----KGMASG--------AVIESFLDKGRGPVATVLVREGTLHKGDIVLC-----G 213 (501)
T ss_dssp CTTCTTHHHHTTTTCCCSTTTSCC----CSBCEE--------EEEEEEECSSSSEEEEEEEEESBCCTTCEEEE-----E
T ss_pred ccCcchhhhhhhhhhhhhcccccc----cccccc--------ceEEEEEeCCcEEEEEEEEEeeEEecCCEEEE-----c
Confidence 999999999997643211111111 111110 0111 124567788888889998887754433 2
Q ss_pred eeCCcceEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCC-Cc
Q 015083 347 EKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKE-NW 394 (413)
Q Consensus 347 ~r~~~~~i~iG~~g~~ik~i~~~a~~~l~~~~~~~v~l~l~vkv~~-~w 394 (413)
...++.+.+.+.+|..++++++..+..+..+.+.+...+.++.+.. +|
T Consensus 214 ~~~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~ 262 (501)
T 1zo1_I 214 FEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKK 262 (501)
T ss_dssp BSSCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCT
T ss_pred cceeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHH
Confidence 4556777777877877777776666555544454556677777653 44
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=2.1e-19 Score=180.41 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEE------EEE--------Ee-----CCCeeEEEEeCCCCc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI------LGI--------CS-----GPEYQMILYDTPGII 174 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~------~~~--------~~-----~~~~~~~l~DtpG~~ 174 (413)
...+|+++|++|+|||||+|+|++...........++.... ... +. .....+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 45699999999999999999999854321111111110000 000 00 011579999999953
Q ss_pred hhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHh
Q 015083 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (413)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 253 (413)
+ +...+...+..+|++|+|+|++++. ..+....+..++.. ...|+++|+||+|+.+........+.+..
T Consensus 87 ~---------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 87 V---------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp G---------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 2 2334556678999999999999886 55555555444431 33699999999999876554433333322
Q ss_pred c-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 015083 254 F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 254 ~-----~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
. ....+++++||++|.|+++|+++|.+.++...
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1 12358999999999999999999999887543
No 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=3.8e-20 Score=164.71 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=102.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. .....|........+. .....+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4468999999999999999999987654 2223333222222223 34468899999995 333322 334
Q ss_pred hcccccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhh------------H-HHHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (413)
++..+|++|+|+|++++... ....+...++....+.|+++|+||+|+..... + ......+....+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 57899999999999875321 11222233333225799999999999964211 1 111222222223
Q ss_pred CccEEEcccC-CCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~-~g~gv~~L~~~l~~~l 282 (413)
..+++++||+ +|.|++++++.|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998754
No 145
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=5.7e-21 Score=194.76 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=139.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCce------------------------eeeeC------CCCceEEEEEEEEeCCCe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKL------------------------SIVTN------KPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~------------------------~~vs~------~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+|+|++... +.+.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 345899999999999999999986411 00111 245565555555677788
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCch-------HHHHHHHHccccCCCCC-EEEEEec
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~-------~~~~l~~~l~~~~~~~p-~ilV~NK 235 (413)
++.||||||+.+ +...+..++..+|++|+|+|++++..+ ++...+..+.. .+.| +++|+||
T Consensus 86 ~~~iiDtPGh~~---------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHRD---------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCTT---------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcHH---------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999532 334566778999999999999876422 44444444444 4666 8999999
Q ss_pred CCCCC--hhhHHHHH----HHHHhcCCC----ccEEEcccCCCCCHH------------------------HHHHHHHhh
Q 015083 236 KDLIK--PGEIAKKL----EWYEKFTDV----DEVIPVSAKYGHGVE------------------------DIRDWILTK 281 (413)
Q Consensus 236 ~Dl~~--~~~~~~~~----~~~~~~~~~----~~v~~iSA~~g~gv~------------------------~L~~~l~~~ 281 (413)
+|+.. ........ ..+... ++ .+++++||++|.|+. .|++.|..
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~-g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~- 232 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKV-GYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA- 232 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHH-TCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-
T ss_pred cccccCCHHHHHHHHHHHHHHHHHc-CCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-
Confidence 99973 22222222 222222 22 589999999999986 35555443
Q ss_pred CCCCCCCCCCCccCCchhhHHHHHHHH------------HHHHhhcCCC---CCceeEEEEEEEEec--------CCCee
Q 015083 282 LPLGPAYYPKDIVSEHPERFFVGEIIR------------EKIFMQYRNE---VPYACQVNVVSYKTR--------PTAKD 338 (413)
Q Consensus 282 l~~~~~~~~~~~~t~~~~~~~~~eiiR------------eki~~~~~~e---ipys~~v~v~~~~~~--------~~~~~ 338 (413)
++ ++...++.|.++.+.+++| ++-.....++ +|+...+.|.+.... +|...
T Consensus 233 ~~------~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v 306 (458)
T 1f60_A 233 IE------QPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNV 306 (458)
T ss_dssp SC------CCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEE
T ss_pred cC------CCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEE
Confidence 22 2222334444444444433 2222233445 677777777776543 22222
Q ss_pred EEEEEEEEeeCCcceEEeecCCh
Q 015083 339 FIQVEIVVEKNSQKIILIGKGGK 361 (413)
Q Consensus 339 ~i~~~~~~~r~~~~~i~iG~~g~ 361 (413)
-+......+++.++.+++|..|.
T Consensus 307 ~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 307 GFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp EEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEcCCcccccCceeEEecCCC
Confidence 22211112467899999998874
No 146
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=1.6e-20 Score=186.23 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+++|++|+|||||+++|+ ..+.|.+.....+.+.+.++.+|||||+.+ +...+..++..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~---------f~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK---------TLKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT---------CHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH---------HHHHHHHHHHHC
Confidence 89999999999999999998 223344444455677788999999999643 223345557899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHccccCCCCCE-EEEEe-cCCCCChhhHHHHHHHHHhcC-----CCccEEE--cccCC
Q 015083 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY 267 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilV~N-K~Dl~~~~~~~~~~~~~~~~~-----~~~~v~~--iSA~~ 267 (413)
|++|+|+| +.+...++...+..++. .+.|. ++|+| |+|+ +.+......+.+.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 88887777776666665 57888 99999 9999 6544333222222211 2358999 99999
Q ss_pred ---CCCHHHHHHHHHhhCCC
Q 015083 268 ---GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 ---g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++|++.|.+.++.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhccc
Confidence 99999999999988753
No 147
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.2e-20 Score=168.76 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
...+|+|+|++|||||||+|+|++..+..... +..+.+.....+..++ ..+.+|||||. ..+..+ +..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHH
Confidence 34589999999999999999999887653322 2222222222233333 68999999995 333322 345
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~ 159 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQ-LLFTETSALN 159 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCCC-
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 5789999999999987542 2233333332222257899999999999643222 122222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 015083 268 GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 268 g~gv~~L~~~l~~~l~~ 284 (413)
|.|+++++++|.+.+..
T Consensus 160 ~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 160 SENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 148
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=1.9e-19 Score=191.89 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=83.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+..+|+|+|++|+|||||+|+|+.....+ +++ ..+.|.......+.+.+..++||||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD- 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-
Confidence 45699999999999999999998321110 111 233444433444566789999999999743
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCCh
Q 015083 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~ 241 (413)
+ ...+..++..+|++|+|+|++++....+..++..+.. .+.|+++|+||+|+...
T Consensus 90 -f-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 -F-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp -C-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred -h-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 2 2335566789999999999999887777777766666 68999999999999753
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.80 E-value=3.9e-20 Score=185.82 Aligned_cols=201 Identities=16% Similarity=0.125 Sum_probs=132.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--------ceee--ee------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSI--VT------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~--------~~~~--vs------~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
...+|+++|++|+|||||+|+|++. .+.. .. ...+.|.+.....+...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 4458999999999999999999873 1110 01 1345555555555667778999999999643
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCCh-hhHH----HHHHHH
Q 015083 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIA----KKLEWY 251 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~-~~~~----~~~~~~ 251 (413)
+ ...+..++..+|++|+|+|++++...+...++..++. .+.| +++|+||+|+... .... +....+
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2345566789999999999999887777766666665 5788 8899999999842 2222 122223
Q ss_pred HhcC---CCccEEEcccCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHH
Q 015083 252 EKFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREK 310 (413)
Q Consensus 252 ~~~~---~~~~v~~iSA~~g~g------------------v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiRek 310 (413)
.... ...+++++||++|.| +.+|++.|.++++.+... .+.|.++.+.+++
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~------~~~p~~~~v~~v~--- 229 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD------VDKPFLMPVEDVF--- 229 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC------CSSCCEEECCEEE---
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC------CCCCcEEEEEEEE---
Confidence 2222 125899999999987 889999999988754321 1222221111111
Q ss_pred HHhhcCCCCCceeEEEEEEEEecCCCee
Q 015083 311 IFMQYRNEVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 311 i~~~~~~eipys~~v~v~~~~~~~~~~~ 338 (413)
..+..|.....++.+|..+.|..+
T Consensus 230 ----~~~~~G~v~~g~v~~G~l~~gd~v 253 (405)
T 2c78_A 230 ----TITGRGTVATGRIERGKVKVGDEV 253 (405)
T ss_dssp ----EETTTEEEEEEECCBSEEETTCEE
T ss_pred ----EcCCCceEEEEEEecccccCCCEE
Confidence 013455556667777777665443
No 150
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=7.2e-19 Score=170.14 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=115.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
..+|+++|.+|||||||+|+|++.....++..+++|.......+.. ++..+.+|||||.. .+ ....+......++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~--~~--~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD--VF--MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH--HH--HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH--HH--hhhhhhhHHHHHh
Confidence 3589999999999999999999986666677888888777766653 57899999999952 22 1222223455567
Q ss_pred ccccEEEEEeeCCCCCch--HHHHH--HHHccccCCCCCEEEEEecCCCCChhhHH-------HHHHHHHhcCCC--ccE
Q 015083 194 INADCIVVLVDACKAPER--IDEIL--EEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTDV--DEV 260 (413)
Q Consensus 194 ~~aD~vl~VvD~~~~~~~--~~~~l--~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------~~~~~~~~~~~~--~~v 260 (413)
..+|++|+|+|+++.... ...+. ...++....+.|+++|+||+|+....... .....+....++ .++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 899999999999886522 21111 11122212579999999999998732221 223334444443 689
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+++||++ .|+.+++..+...+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999888887654
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=5.2e-19 Score=168.30 Aligned_cols=166 Identities=16% Similarity=0.172 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeC-------CCCceEEEEEEEEeCCC--eeEEEEeCCCCchh-----hhhhH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHML 181 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~-------~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~~l 181 (413)
.+|+++|.+|+|||||+|+|++........ .+.++.......+..++ ..+.+|||||+.+. .+..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 489999999999999999999887654332 23333344444444444 48999999998431 22333
Q ss_pred HHHHHHHHHhhcc-------------cccEEEEEeeCCC-CCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH
Q 015083 182 DSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (413)
Q Consensus 182 ~~~~~~~~~~~~~-------------~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 247 (413)
...+..+...++. .+|+++++++.+. +....+..++..+.. +.|+++|+||+|+....+....
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHH
Confidence 3333333333333 3789999987654 667777777766654 7999999999999876655433
Q ss_pred HHHHHhc--CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015083 248 LEWYEKF--TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 248 ~~~~~~~--~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
...+... ....+++++||+++.|+++++++|.+.+|-
T Consensus 166 ~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 3222211 012468999999999999999999998763
No 152
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=2.9e-21 Score=174.32 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=98.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||.. .+..+ +..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE--RFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT--TCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcH--hHHHH-------HHH
Confidence 45699999999999999999999877642 2223333333333333343 679999999952 33222 234
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++..+|++|+|+|++++.. ....++..+......+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 4789999999999987542 23333333333322478999999999997543221 01112222223 47899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 015083 269 HGVEDIRDWILTKLPL 284 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~~ 284 (413)
.|+++++++|.+.+..
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.80 E-value=5.4e-21 Score=197.14 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=118.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
|+++|+++|++|+|||||+|+|++..+.. ...+++|.+.....+.. .+..+.||||||+. .+..+ ...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe--~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHA--AFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC--CTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChH--HHHHH-------HHHH
Confidence 67799999999999999999999887653 35667777655555544 56789999999953 33322 3345
Q ss_pred cccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh--hHHHHHHHH----HhcCCCccEEEcccC
Q 015083 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSAK 266 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~v~~iSA~ 266 (413)
+..+|++|+|+|++++...++...+..+.. .+.|+++|+||+|+.... ........+ ..+....+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999988887777777766 688999999999997432 111111111 112223589999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 015083 267 YGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 267 ~g~gv~~L~~~l~~~l~~ 284 (413)
+|.|+++|+++|...++.
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999987653
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=162.10 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=102.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. .....|+........ ......+.+|||||. ..+..+ ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------ER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------HH
Confidence 4569999999999999999999987753 444455544333222 333467889999995 333322 12
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHcccc---CCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCccEEEcc
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iS 264 (413)
++..+|++++|+|+++.. .....++..+.+.. ..+.|+++|+||+|+.....+ .......... + .+++++|
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~e~S 165 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-G-CLFFEVS 165 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-T-CEEEECC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-C-CcEEEEe
Confidence 467899999999998643 22333333322211 147999999999999643221 1222222222 3 3899999
Q ss_pred c-CCCCCHHHHHHHHHhhC
Q 015083 265 A-KYGHGVEDIRDWILTKL 282 (413)
Q Consensus 265 A-~~g~gv~~L~~~l~~~l 282 (413)
| ++|.|++++++.|.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHH
Confidence 9 89999999999998765
No 155
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=1.8e-20 Score=199.90 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=143.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+..+|+|+|++|+|||||+|+|++....+ +++ .+++|.......+.+.+.+++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD- 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS-
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc-
Confidence 45699999999999999999998422111 111 234454444455677789999999999754
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh--H-HHHHHHHH-
Q 015083 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--I-AKKLEWYE- 252 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~-~~~~~~~~- 252 (413)
+. ..+..++..+|++|+|+|++++....+..++..+.. .+.|+++|+||+|+...+. . ......+.
T Consensus 88 -f~-------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 88 -FT-------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp -CC-------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC
T ss_pred -hH-------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCccccchHHHHHHHHHHhCC
Confidence 22 234556788999999999999887777777776666 6899999999999975321 1 11111110
Q ss_pred --------------------------------------------------------------------------------
Q 015083 253 -------------------------------------------------------------------------------- 252 (413)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (413)
T Consensus 158 ~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~ 237 (693)
T 2xex_A 158 NAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISV 237 (693)
T ss_dssp CEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCH
T ss_pred CceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC---------C--ccCCchhhHHHHHHHHHH
Q 015083 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK---------D--IVSEHPERFFVGEIIREK 310 (413)
Q Consensus 253 -----------~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~---------~--~~t~~~~~~~~~eiiRek 310 (413)
....+.|+++.||.+|.|++.|++.|.+++|.+....+. . .....+...+.+.++ |
T Consensus 238 ~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~Vf--K 315 (693)
T 2xex_A 238 SELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF--K 315 (693)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEE--E
T ss_pred HHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEE--E
Confidence 001235799999999999999999999999865321100 0 000001111111111 0
Q ss_pred HHhhcCCCCCceeEEEEEEEEecCCCeeEEEEEEEEeeCCcceEEeecC
Q 015083 311 IFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 359 (413)
Q Consensus 311 i~~~~~~eipys~~v~v~~~~~~~~~~~~i~~~~~~~r~~~~~i~iG~~ 359 (413)
+ ...+..+..+.++|.+|+.+.|..+++......+|.++.+++.|.+
T Consensus 316 ~--~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~ 362 (693)
T 2xex_A 316 V--MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362 (693)
T ss_dssp E--EEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSC
T ss_pred e--eecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCC
Confidence 1 1245678889999999999887655542222233445555555543
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=9.6e-20 Score=165.76 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+|+|++..+. .....|+.......+. .....+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4468999999999999999999987764 2223333322222233 33468999999995 333322 234
Q ss_pred hcccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhh------------H-HHHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (413)
++..+|++|+|+|+++... .....+...++....+.|+++|+||+|+..... + ......+....+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 5789999999999987532 221222233333225799999999999964211 1 111222222223
Q ss_pred CccEEEcccC-CCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~-~g~gv~~L~~~l~~~l 282 (413)
..+++++||+ +|.|++++++.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 3589999999 6899999999988754
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=3e-20 Score=190.77 Aligned_cols=150 Identities=18% Similarity=0.143 Sum_probs=101.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee------------------------------eeCCCCceEEEEEEEEeCCCe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~------------------------------vs~~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+|+|++....+ .....+.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 34589999999999999999997652111 122346666666666778889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-------CchHHHHHHHHccccCCCCCEEEEEecC
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
++.||||||+.+ +...+..++..||++|+|+|++++ ...+..+....+... ...|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~---------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGG---------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcHH---------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 999999999632 234456668899999999999986 334555555544441 235799999999
Q ss_pred CCCCh--hhHHHHHHHH----HhcC---CCccEEEcccCCCCCHHH
Q 015083 237 DLIKP--GEIAKKLEWY----EKFT---DVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 237 Dl~~~--~~~~~~~~~~----~~~~---~~~~v~~iSA~~g~gv~~ 273 (413)
|+.+. .........+ .... ...+++++||++|.|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99762 2222222222 2111 135789999999999974
No 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.79 E-value=2e-19 Score=161.74 Aligned_cols=160 Identities=22% Similarity=0.225 Sum_probs=98.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|.+|||||||+|+|++.....++..+.++.+.....+..+ ..++.+|||+|.... ...+ ...+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~-------~~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWL-------HDHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTT-------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhH-------HHhh
Confidence 45899999999999999999997554434443333333322233333 346789999995321 1112 1233
Q ss_pred cccccEEEEEeeCCCCC--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHH-HHHHHHHhcCCCccEEEcccCCC
Q 015083 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
++.+|++++|+|+++.. .....++..+.+. ...+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEeccccC
Confidence 56789999999998643 2233333222221 11478999999999986432221 11112222222 47899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 015083 269 HGVEDIRDWILTKLP 283 (413)
Q Consensus 269 ~gv~~L~~~l~~~l~ 283 (413)
.||++++++|.+.+.
T Consensus 157 ~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 157 HNVKELFEGIVRQVR 171 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988763
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.79 E-value=1.5e-18 Score=174.56 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=127.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEEEEEeC------------------C-----CeeEEEEe
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG------------------P-----EYQMILYD 169 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~~~~~~------------------~-----~~~~~l~D 169 (413)
..+|+++|++|+|||||+++|++..... ....++.|.+........ + ...+.|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 3589999999999999999999754321 112344454322211110 0 16799999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH-
Q 015083 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK- 247 (413)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~- 247 (413)
|||+ .. +...+...+..+|++|+|+|++++. ..++...+..++.. ...|+++|+||+|+.........
T Consensus 90 tPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 90 APGH--EA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp CSSH--HH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred CCCh--HH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHH
Confidence 9994 22 3345566678999999999999876 55555444444331 33689999999999876533222
Q ss_pred ---HHHHHhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHH-HHHHhhcCCCCCce
Q 015083 248 ---LEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIR-EKIFMQYRNEVPYA 322 (413)
Q Consensus 248 ---~~~~~~~-~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiR-eki~~~~~~eipys 322 (413)
.+.+... ....+++++||++|.|+++|+++|.+.++.+..... .+.+..+.+.+. ..-...+++..|..
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~------~~~~~~v~~~f~v~~~g~~~~~~~G~v 233 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPN------KPPKMLVLRSFDVNKPGTPPEKLVGGV 233 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTT------SCCEEEEEEEECCSCCC----CCCCCE
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccC------CCcEEEEEEEEeccCCCccccCCceEE
Confidence 2222221 124589999999999999999999998875432111 111100000000 00000113445666
Q ss_pred eEEEEEEEEecCCCeeEE
Q 015083 323 CQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 323 ~~v~v~~~~~~~~~~~~i 340 (413)
....+..|..+.|..+.+
T Consensus 234 ~~g~v~~G~l~~gd~v~~ 251 (410)
T 1kk1_A 234 LDGSIVQGKLKVGDEIEI 251 (410)
T ss_dssp EEEEEEESCEETTCEEEE
T ss_pred EEEEEEeCeEeeCCEEEE
Confidence 777888888887765544
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.79 E-value=1.2e-18 Score=174.44 Aligned_cols=201 Identities=16% Similarity=0.078 Sum_probs=130.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCce-------ee--------eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~-------~~--------vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (413)
..+|+++|++|+|||||+++|++... .. .....+.|.+.....+...+..+.||||||+. .
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~--~-- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA--D-- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH--H--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH--H--
Confidence 34899999999999999999987411 00 01134555554444466677899999999953 2
Q ss_pred hHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCCh-hhHH----HHHHHHHh
Q 015083 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIA----KKLEWYEK 253 (413)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~-~~~~----~~~~~~~~ 253 (413)
+...+..++..+|++|+|+|++++...++...+..++. .+.| +++|+||+|+... .... +..+.+..
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 33456667899999999999999887776666666655 5788 6899999999852 2111 12222322
Q ss_pred cC---CCccEEEcccCCCCC----------HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCC
Q 015083 254 FT---DVDEVIPVSAKYGHG----------VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (413)
Q Consensus 254 ~~---~~~~v~~iSA~~g~g----------v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eip 320 (413)
.. ...+++++||++|.| +.+|++.|.+.++.+... .+.|.++.+..+. ..+..|
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~------~~~p~~~~v~~v~-------~~~~~G 218 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD------LEKPFLLPVESVY-------SIPGRG 218 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC------TTSCCEEECCEEE-------EETTTE
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC------CCCcEEEEEEEEE-------EeCCce
Confidence 21 135899999999774 899999999988753321 1111111011000 023455
Q ss_pred ceeEEEEEEEEecCCCeeE
Q 015083 321 YACQVNVVSYKTRPTAKDF 339 (413)
Q Consensus 321 ys~~v~v~~~~~~~~~~~~ 339 (413)
.....++..|..+.|..+.
T Consensus 219 ~v~~g~v~~G~l~~gd~v~ 237 (397)
T 1d2e_A 219 TVVTGTLERGILKKGDECE 237 (397)
T ss_dssp EEEEEECCBSEEETTCEEE
T ss_pred EEEEEEEeeceEeCCCEEE
Confidence 5566677777777665444
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.78 E-value=7.1e-19 Score=156.71 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCce-EEEEEEEEe-----CCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt-~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (413)
.+|+++|.+|||||||+++|++...........|. .+.....+. .....+.+|||||. ..+..+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~------- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTH------- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTS-------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhh-------
Confidence 48999999999999999999986422222222222 222221111 24568999999994 3333332
Q ss_pred HhhcccccEEEEEeeCCCCC---chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH----HHHHHHHhcCCCc---c
Q 015083 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVD---E 259 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~ 259 (413)
..++..+|++++|+|.+++. .....|+...... ..+.|+++|+||+|+....... .....+....++. +
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 23366799999999998763 2333444433222 1478999999999998655432 1223333333332 3
Q ss_pred EEEcccCCCC-CHHHHHHHHHhhCCC
Q 015083 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (413)
Q Consensus 260 v~~iSA~~g~-gv~~L~~~l~~~l~~ 284 (413)
++++||++|. |+++|++.|.+.++.
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999997 999999999887754
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=173.61 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee--eCCCCceEEEEEEE---Ee--------C----C--------CeeEEEE
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGI---CS--------G----P--------EYQMILY 168 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v--s~~~~tt~~~~~~~---~~--------~----~--------~~~~~l~ 168 (413)
...+|+++|++|+|||||+++|++...... ...++.|....... .. . . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 345899999999999999999997543211 12234444322111 10 0 1 1679999
Q ss_pred eCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC-chHHHHHHHHccccCCCCCEEEEEecCCCCChhh----
Q 015083 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (413)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---- 243 (413)
||||+ .. +...+...+..+|++|+|+|++++. ..++...+..++.. ...|+++|+||+|+.....
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 22 3345566678899999999999875 55554444444331 2358999999999976432
Q ss_pred HHHHHHHHHhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 015083 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (413)
Q Consensus 244 ~~~~~~~~~~~-~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~ 285 (413)
..+..+.+... ....+++++||++|.|+++|+++|.+.++.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 22223333321 1245899999999999999999999988754
No 163
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1e-20 Score=171.22 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+++|++..+. .....++.......+.. ....+.+|||||. ..+. .....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYD-------RLRPL 97 (204)
Confidence 4568999999999999999999977653 33444444433333333 3456779999995 2222 22344
Q ss_pred hcccccEEEEEeeCCCCC--chHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~--~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (413)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578999999999998754 222223333343322379999999999997532111 11111222223
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 34789999999999999999987653
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=163.12 Aligned_cols=168 Identities=15% Similarity=0.225 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC--CceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~--~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~ 189 (413)
+.++|+++|++|||||||+|+|++.... .+..+ ++|.......+.+.+..+.+|||||+.+... ..+...+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999998874 34444 6777777777788889999999999864221 12233455556
Q ss_pred HhhcccccEEEEEeeCCCCCchHHHHHHHHccccC--CCCCEEEEEecCCCCChhhHH--------HHHHHHHhcCCCcc
Q 015083 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA--------KKLEWYEKFTDVDE 259 (413)
Q Consensus 190 ~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~ 259 (413)
..++..+|++|+|+|+++.......++..+..... ...|+++|+||+|+.....+. ........... .
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--S
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--E
Confidence 66678899999999987544433334433332111 246999999999997654333 12222233322 4
Q ss_pred EEEcccCC-----CCCHHHHHHHHHhhCCC
Q 015083 260 VIPVSAKY-----GHGVEDIRDWILTKLPL 284 (413)
Q Consensus 260 v~~iSA~~-----g~gv~~L~~~l~~~l~~ 284 (413)
++.+++.. +.|+.+|+..+...+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 55665553 37899999998887754
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=1.1e-18 Score=182.69 Aligned_cols=206 Identities=18% Similarity=0.186 Sum_probs=128.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC-CceEEEEEEEEe------------------CCCeeEEEEeCCCC
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGI 173 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~-~tt~~~~~~~~~------------------~~~~~~~l~DtpG~ 173 (413)
.|+++|+|+|++|+|||||+|+|++..+.. ..+ +.|.+.....+. ....+++||||||+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 367899999999999999999999765431 111 233221111111 11225999999996
Q ss_pred chhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh-----------
Q 015083 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------- 242 (413)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----------- 242 (413)
. .+..+ ...++..||++|+|+|++++...++...+..++. .+.|+++|+||+|+....
T Consensus 81 e--~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 81 E--AFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp S--CCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred H--HHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHH
Confidence 3 33332 2345788999999999999988887777777766 789999999999996421
Q ss_pred ------hHH--------HHHHHHHhc-------------CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccC
Q 015083 243 ------EIA--------KKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVS 295 (413)
Q Consensus 243 ------~~~--------~~~~~~~~~-------------~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t 295 (413)
.+. +....+... ....+++++||++|.|+++|+++|...++..... ....-.
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~-~l~~~~ 228 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE-QLKIEE 228 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG-GGEECT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchh-hhcccc
Confidence 010 111122111 2334899999999999999999999876521100 000000
Q ss_pred CchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCeeEE
Q 015083 296 EHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFI 340 (413)
Q Consensus 296 ~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~~~~~~~i 340 (413)
+.|.+. .++. ...+..|..+.+++.+|+.+.|..+.+
T Consensus 229 ~~p~~~--------~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 229 DSPARG--------TILEVKEETGLGMTIDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp TSBCEE--------EEEEEEEETTEEEEEEEEEEESEEETTCEEEE
T ss_pred CCCcee--------EEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEE
Confidence 111110 0111 124456677788888888887765544
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=1.2e-18 Score=169.11 Aligned_cols=159 Identities=17% Similarity=0.098 Sum_probs=108.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCe--eEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY--QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+..+|+++|.+|||||||+++|++..+. ....+|+.......+..++. .+.+|||||.. .+..+ ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE--DYDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG--GGTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCch--hhhHH-------HHH
Confidence 3468999999999999999999977653 45666776665555555544 55699999953 33222 344
Q ss_pred hcccccEEEEEeeCCCCCch--HHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-------------HHHHHHHhcCC
Q 015083 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (413)
++..+|++++|+|++++... ....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 57899999999999875422 2212223333322489999999999986432111 11122222334
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
..+++++||++|.|++++++.|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999987654
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.7e-17 Score=150.36 Aligned_cols=167 Identities=23% Similarity=0.226 Sum_probs=103.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc-eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-----hhHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~-~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~l~~~~~~ 187 (413)
+..+|+++|++|||||||+|+|++.. ...+++.+++|..... +..++ .+.+|||||+..... ..+. ....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQ-RALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHH-HHHH
Confidence 44589999999999999999999987 4445667777765332 22222 688999999743110 0111 1112
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH----HHHHHHHHhcCCCccEEEc
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTDVDEVIPV 263 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~v~~i 263 (413)
.+......+|.+++|+|++.+.......+...+.. .+.|+++|+||+|+...... ......+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 22223467899999999988765544445554544 67899999999999865322 2223333333334578999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 015083 264 SAKYGHGVEDIRDWILTKLPLGP 286 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l~~~~ 286 (413)
||+++.|+++++++|.+.+..++
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC---
T ss_pred eecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999876543
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=2.9e-18 Score=182.14 Aligned_cols=199 Identities=21% Similarity=0.152 Sum_probs=134.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~------~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+..+|+|+|++|+|||||+++|++..... +.+ ..+.|.......+.+.+..+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~- 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD- 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence 44589999999999999999998432210 011 113343344444566778999999999643
Q ss_pred hhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhc--
Q 015083 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF-- 254 (413)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-- 254 (413)
+ ...+..++..+|++++|+|++.+...+...++..++. .+.|+++|+||+|+. .. .....+.+...
T Consensus 87 -f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~-~~-~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 87 -F-------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG-GD-YYALLEDLRSTLG 154 (665)
T ss_dssp -G-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC-CC-HHHHHHHHHHHHC
T ss_pred -h-------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh-hh-HHHHHHHHHHHhC
Confidence 2 2335566789999999999999988888777777766 689999999999986 32 11111111110
Q ss_pred --------------------------------------------------------------------------------
Q 015083 255 -------------------------------------------------------------------------------- 254 (413)
Q Consensus 255 -------------------------------------------------------------------------------- 254 (413)
T Consensus 155 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~ 234 (665)
T 2dy1_A 155 PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEAL 234 (665)
T ss_dssp SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHH
T ss_pred CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHH
Confidence
Q ss_pred ----------CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCcee
Q 015083 255 ----------TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYAC 323 (413)
Q Consensus 255 ----------~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~ 323 (413)
..+.|++++||++|.|+++|+++|.+.+|.+.... .+.|.. +. ++. ...+..+..+
T Consensus 235 ~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~-----~~~p~~---~~-----V~k~~~d~~~G~~~ 301 (665)
T 2dy1_A 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF-----GDGPPL---AK-----VFKVQVDPFMGQVA 301 (665)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH-----CSCSCE---EE-----EEEEEEETTTEEEE
T ss_pred HHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC-----CCCCeE---EE-----EEEEEEcCCCCeEE
Confidence 12358999999999999999999999998542100 011110 00 111 1145677889
Q ss_pred EEEEEEEEecCCCee
Q 015083 324 QVNVVSYKTRPTAKD 338 (413)
Q Consensus 324 ~v~v~~~~~~~~~~~ 338 (413)
.+++.+|+.+.|..+
T Consensus 302 ~~rV~sG~l~~g~~v 316 (665)
T 2dy1_A 302 YLRLYRGRLKPGDSL 316 (665)
T ss_dssp EEEEEESEECTTEEE
T ss_pred EEEEcccEEecCCEE
Confidence 999999999877544
No 169
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.75 E-value=1.8e-19 Score=177.44 Aligned_cols=186 Identities=21% Similarity=0.314 Sum_probs=115.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCceE-------------------------------------
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR------------------------------------- 151 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~tt~------------------------------------- 151 (413)
.+.|+|+|+||||||||+|+|++ .++.++...|+++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 56899999999999999999986 34444443333221
Q ss_pred EEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCE
Q 015083 152 HRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (413)
Q Consensus 152 ~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ 229 (413)
+....+ +...+..+.|+||||+.+.. . .....+|++++|+|++.+... ..+...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCC
Confidence 100000 11356789999999975321 1 114689999999999865321 1111111 24688
Q ss_pred EEEEecCCCCChhhHHHHHHHH----HhcC-----CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCc---
Q 015083 230 LLVLNKKDLIKPGEIAKKLEWY----EKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--- 297 (413)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~~~~----~~~~-----~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~--- 297 (413)
++|+||+|+............+ .... ...+++++||++|.|+++|+++|.+.++. .++...+++.
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~ 292 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRK 292 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHH
Confidence 9999999997543222212222 1111 13478999999999999999999987643 2333334433
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCc
Q 015083 298 PERFFVGEIIREKIFMQYRNEVPY 321 (413)
Q Consensus 298 ~~~~~~~eiiReki~~~~~~eipy 321 (413)
+.++++.+++|++++..+.+++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 293 QQKVWMWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch
Confidence 566788999999999888777765
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=169.44 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=98.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee----------eeCCCCc----------------------eEEEEEEEEeCCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKPQT----------------------TRHRILGICSGPE 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~----------vs~~~~t----------------------t~~~~~~~~~~~~ 162 (413)
..+|+++|++|+|||||+|+|++....+ .+..+++ |.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 3589999999999999999998654221 1122233 3333334456677
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCC-CEEEEEecCCCCCh
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP 241 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilV~NK~Dl~~~ 241 (413)
..+.+|||||+.+ +. ..+..++..+|++|+|+|++++...+....+..+.. .+. |+++|+||+|+...
T Consensus 104 ~~~~iiDtpGh~~--f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 104 RKFIIADTPGHEQ--YT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEEEEECCCSGG--GH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTS
T ss_pred ceEEEEECCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcc
Confidence 8999999999632 22 234455789999999999999887666655555544 344 58999999999852
Q ss_pred --hhHHHH---H-HHHHhcC---CCccEEEcccCCCCCHHH
Q 015083 242 --GEIAKK---L-EWYEKFT---DVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 242 --~~~~~~---~-~~~~~~~---~~~~v~~iSA~~g~gv~~ 273 (413)
...... . ..+.... ...+++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 222211 2 2222222 125799999999999987
No 171
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=7.2e-19 Score=173.54 Aligned_cols=184 Identities=20% Similarity=0.262 Sum_probs=116.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCceEEE-------E----------EEE-------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------I----------LGI------------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt~~~-------~----------~~~------------- 157 (413)
+.++|+|+|.||||||||+++|. |.++..+...++++... . ..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999985 45555554444443310 0 000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC
Q 015083 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (413)
+...+..++||||||+.+.. ...+..+|++|+|+|+..+... . .+.......|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~------------~~~~~~aD~vl~V~d~~~~~~~--~----~l~~~~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSE------------VAVANMVDTFVLLTLARTGDQL--Q----GIKKGVLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHH------------HHHHTTCSEEEEEEESSTTCTT--T----TCCTTSGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHH------------HHHHHhCCEEEEEECCCCCccH--H----HHHHhHhhcC
Confidence 12356789999999975421 1124789999999998754322 1 1111113469
Q ss_pred EEEEEecCCCCChhhHHHHHHHHHh----cC----C-CccEEEcccCCCCCHHHHHHHHHhhCCC--CCCCCCCCccCCc
Q 015083 229 ILLVLNKKDLIKPGEIAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEH 297 (413)
Q Consensus 229 ~ilV~NK~Dl~~~~~~~~~~~~~~~----~~----~-~~~v~~iSA~~g~gv~~L~~~l~~~l~~--~~~~~~~~~~t~~ 297 (413)
.++|+||+|+............+.. .. . ..+++++||++|.|+++|+++|.+.++. .+..++. . ...
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~-~-r~~ 297 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA-R-RRD 297 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH-H-HHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH-H-HHH
Confidence 9999999999765443332222222 11 1 2579999999999999999999988754 2222222 1 112
Q ss_pred hhhHHHHHHHHHHHHhhcCC
Q 015083 298 PERFFVGEIIREKIFMQYRN 317 (413)
Q Consensus 298 ~~~~~~~eiiReki~~~~~~ 317 (413)
..++.+.+++|++++..+..
T Consensus 298 ~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 298 QQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35667889999999887654
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.74 E-value=2.8e-18 Score=187.53 Aligned_cols=203 Identities=15% Similarity=0.132 Sum_probs=126.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCcee-------e--e------eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-------I--V------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~-------~--v------s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (413)
....+|+++|++|+|||||+++|++.... . + ....|.|.+.....+...+..+.||||||+. .
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--d 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--D 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH--H
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH--H
Confidence 34568999999999999999999864110 0 0 1123344433333355667899999999953 2
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCCCCChhh-HH----HHHHHH
Q 015083 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWY 251 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~Dl~~~~~-~~----~~~~~~ 251 (413)
+...+..++..+|++|+|||++++...++...+..++. .+.| +|+|+||+|+..... .. +....+
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 33456667899999999999999876666666555555 5788 789999999985322 11 122223
Q ss_pred HhcC---CCccEEEcccCCC--------CCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCC
Q 015083 252 EKFT---DVDEVIPVSAKYG--------HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (413)
Q Consensus 252 ~~~~---~~~~v~~iSA~~g--------~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eip 320 (413)
.... ...+++++||++| .|+++|++.|.+.++.+... .+.|.++.+.+++ ..+..|
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~------~d~Pfr~pId~Vf-------~i~G~G 509 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA------IDKPFLLPIEDVF-------SISGRG 509 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG------GGSCCEEECCEEE-------EETTTE
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc------cccceeeeccccc-------cccCCc
Confidence 2221 1358999999999 57999999999988743221 1111111111100 013455
Q ss_pred ceeEEEEEEEEecCCCeeE
Q 015083 321 YACQVNVVSYKTRPTAKDF 339 (413)
Q Consensus 321 ys~~v~v~~~~~~~~~~~~ 339 (413)
......+..|..+.|..+.
T Consensus 510 tVvtGrV~sGtLkvGD~V~ 528 (1289)
T 3avx_A 510 TVVTGRVERGIIKVGEEVE 528 (1289)
T ss_dssp EEEEEECCBSEEETTCEEE
T ss_pred EEEEEEEeccEEecCCEEE
Confidence 5666777777777664443
No 173
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.74 E-value=7.6e-19 Score=188.09 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceee-----------eeCCCCceEEEEEEE------EeC-------CCeeEEEEeC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKPQTTRHRILGI------CSG-------PEYQMILYDT 170 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~~~~tt~~~~~~~------~~~-------~~~~~~l~Dt 170 (413)
-.+|||+||.++|||||+++|+.....+ +++...-.+.+...+ +.| +++.++|+||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 3489999999999999999997432111 122221122222111 222 3688999999
Q ss_pred CCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015083 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 171 pG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
||+.+. ...+.++++.||.+|+|||+..|...+++.+++.+.. .+.|.++|+||+|+..
T Consensus 93 PGHvDF---------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDF---------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CSCTTC---------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCccc---------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 998763 3456777899999999999999999999999988877 7999999999999863
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.74 E-value=7.8e-18 Score=170.54 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=96.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee------------------------e------CCCCceEEEEEEEEeCCCe
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------T------NKPQTTRHRILGICSGPEY 163 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v------------------------s------~~~~tt~~~~~~~~~~~~~ 163 (413)
...+|+++|++|+|||||+++|++....+. . ...+.|.+.....+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 345899999999999999999986421110 1 1355666655556777888
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC-------CchHHHHHHHHccccCCC-CCEEEEEec
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNK 235 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~l~~~l~~~~~~-~p~ilV~NK 235 (413)
.+.+|||||+.+ +...+..++..+|++|+|+|++++ +..+....+..+.. .+ .|+++|+||
T Consensus 85 ~~~iiDtpG~~~---------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD---------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT---------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcHH---------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999643 233456678999999999999987 44455555554444 34 468999999
Q ss_pred CCCCCh----hhHH----HHHHHHHhcC---CCccEEEcccCCCCCHH
Q 015083 236 KDLIKP----GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 236 ~Dl~~~----~~~~----~~~~~~~~~~---~~~~v~~iSA~~g~gv~ 272 (413)
+|+... .... +....+.... ...+++++||++|.|+.
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 999762 1111 1222222221 12579999999999997
No 175
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-17 Score=163.88 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
+|+|||.||||||||+|+|++.+ +.++++|+||+++..+++.+.+.++.|+||||+...... ...+...+...++.|
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHhc
Confidence 89999999999999999999987 457999999999999999999999999999999753221 122334566778899
Q ss_pred cEEEEEeeCCCCCchHHHHHHHHcccc---CCCCCEEEEEecCCC
Q 015083 197 DCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDL 238 (413)
Q Consensus 197 D~vl~VvD~~~~~~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl 238 (413)
|++++|+|++++...... +...+... -.++|.++++||+|.
T Consensus 151 d~il~vvD~~~p~~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQI-IEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHHH-HHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHHH-HHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999876533221 11111110 145777888888886
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=9.5e-18 Score=178.98 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=109.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCc--------------eEEEEEE----E---------EeCCC-----
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE----- 162 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~t--------------t~~~~~~----~---------~~~~~----- 162 (413)
..+|+|+|.+|+|||||+|+|+|..+..++..|+| |+....+ . +...+
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 45899999999999999999999998877777777 2211000 0 00000
Q ss_pred -------------------------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHH
Q 015083 163 -------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217 (413)
Q Consensus 163 -------------------------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~ 217 (413)
..+.||||||+.... . ....+..++..||++|||+|++++....+...+
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-A-----RNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-T-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-h-----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 369999999975321 1 234466678899999999999887755444333
Q ss_pred -HHccccCCCCCEEEEEecCCCCChh--------hHHH----HH----HHHHhcC-------CCccEEEcccC-------
Q 015083 218 -EGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK------- 266 (413)
Q Consensus 218 -~~l~~~~~~~p~ilV~NK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~v~~iSA~------- 266 (413)
..+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 223 ~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 223 ENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 34544 578999999999986432 1111 11 1122111 12479999999
Q ss_pred -------CCCCHHHHHHHHHhhCC
Q 015083 267 -------YGHGVEDIRDWILTKLP 283 (413)
Q Consensus 267 -------~g~gv~~L~~~l~~~l~ 283 (413)
+|.|+++|++.|.+.+.
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=9e-18 Score=174.48 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=98.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE-------E----eCCCeeEEEEeCCCCchhhhhhH
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-------C----SGPEYQMILYDTPGIIEKKIHML 181 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~-------~----~~~~~~~~l~DtpG~~~~~~~~l 181 (413)
.+..+|+++|.+|||||||+|+|++..+. .....|........ + ...+..+.+|||||. ..+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--EIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC--CTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH--HHHHHH
Confidence 45569999999999999999999998754 22222221111111 1 123578999999994 344444
Q ss_pred HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhH--HHHHHHHHhcCCCcc
Q 015083 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDE 259 (413)
Q Consensus 182 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 259 (413)
...+ +..+|++|+|+|+++. .....+ ...+.....+.|+++|+||+|+.....+ ......+... + .+
T Consensus 115 ~~~~-------l~~~d~ii~V~D~s~~-~~~~~~-~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~ 183 (535)
T 3dpu_A 115 HQFF-------MTRSSVYMLLLDSRTD-SNKHYW-LRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI-E-NR 183 (535)
T ss_dssp CHHH-------HHSSEEEEEEECGGGG-GGHHHH-HHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-T-TC
T ss_pred HHHH-------ccCCcEEEEEEeCCCc-hhHHHH-HHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc-C-Cc
Confidence 3333 6689999999999764 333333 3333333356999999999999754332 2222233222 2 46
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 015083 260 VIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (413)
Q Consensus 260 v~~iSA~~g~gv~~L~~~l~~~l~~~~~ 287 (413)
++++||++|.|+++|++.|.+.+...+.
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998876554
No 178
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.71 E-value=3.6e-18 Score=180.70 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=136.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceee-----------eeCCC------CceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~-----------vs~~~------~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (413)
.+|+|+||.++|||||+++|+.....+ +++.. |.|.......+.++++.++|+||||+.+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D--- 79 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD--- 79 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH---
Confidence 379999999999999999996322211 11111 2222222233678889999999999876
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHH------
Q 015083 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE------ 249 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~------ 249 (413)
|...+.++++.+|.+|+|||+..|.+.+++.+++.+.. .+.|.++++||+|+...+. +.+..+
T Consensus 80 ------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 80 ------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp ------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred ------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 33456777899999999999999999999999998887 7899999999999864321 001000
Q ss_pred -----------------------------------HHH------------------hcCCCccEEEcccCCCCCHHHHHH
Q 015083 250 -----------------------------------WYE------------------KFTDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 250 -----------------------------------~~~------------------~~~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
.+. ....+.|+++.||+++.|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 000 012356899999999999999999
Q ss_pred HHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHh-hcCCCCCceeEEEEEEEEecCCCee
Q 015083 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKD 338 (413)
Q Consensus 277 ~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~-~~~~eipys~~v~v~~~~~~~~~~~ 338 (413)
.|.+++|.+....+.. .... ++. ...+..+..+.++|.+|+.+.|..+
T Consensus 232 ~i~~~~p~p~~~~~~~-~~~~-------------Vfk~~~d~~~G~la~~RV~sG~l~~g~~v 280 (638)
T 3j25_A 232 VITNKFYSSTHRGPSE-LCGN-------------VFKIEYTKKRQRLAYIRLYSGVLHLRDSV 280 (638)
T ss_dssp HHHHSCCCSGGGSCCC-CCBE-------------EBCCCCCSTTCCCCBCCBSSBCCCSCCCS
T ss_pred hhhccccCcccchhhh-hcce-------------eeeeeeeccCceEEEEEEEcCcccCCCcc
Confidence 9999998654322211 1110 111 1245677788888888887766443
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.71 E-value=6.8e-18 Score=165.67 Aligned_cols=184 Identities=19% Similarity=0.291 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCceEEE--------------------EEEE----------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt~~~--------------------~~~~---------- 157 (413)
+...|+++|++|+|||||+|.|. +.++..+...++++... +...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 45689999999999999999995 55666666666554310 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC
Q 015083 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (413)
+.+.+.+++||||||+.+... .....+|++|+|+|++.+... +.++....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------------~~~~~aD~vl~Vvd~~~~~~~------~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDDL------QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHH------------HHHHhCCEEEEEEeCCccHHH------HHHHHhhhccc
Confidence 014567899999999854211 024799999999998754210 11110002468
Q ss_pred EEEEEecCCCCChhhHHHHHHHHH----hcCC-----CccEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCccCC
Q 015083 229 ILLVLNKKDLIKPGEIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSE 296 (413)
Q Consensus 229 ~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~v~~iSA~~g~gv~~L~~~l~~~l~---~~~~~~~~~~~t~ 296 (413)
.++|+||+|+............+. .... ..+++++||++|.|+++|+++|.+.++ +++ .++ ....
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~~-~~~-~~r~- 273 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG-RLQ-QVRQ- 273 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT-HHH-HHHH-
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhCC-hHH-HHHH-
Confidence 999999999987544332222222 1111 357899999999999999999988764 221 222 1112
Q ss_pred chhhHHHHHHHHHHHHhhcCCC
Q 015083 297 HPERFFVGEIIREKIFMQYRNE 318 (413)
Q Consensus 297 ~~~~~~~~eiiReki~~~~~~e 318 (413)
...++.+.|.+++.+++.+.++
T Consensus 274 ~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 274 QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2356678888999998887664
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.70 E-value=1.1e-16 Score=144.18 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=99.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+++|++|||||||+++|++..+..... +..+.+...+.+..++ ..+.+|||||. ..+..+. ..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~-------~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRIT-------SAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCC-------HHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhh-------HHH
Confidence 3589999999999999999999987653222 2222223333334444 56789999994 3333222 223
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|++.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~~d~Sal~~~ 153 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDST 153 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 568999999999876432 2222332221111246899999999999643211 111222222233 378999999999
Q ss_pred CHHHHHHHHHhhCC
Q 015083 270 GVEDIRDWILTKLP 283 (413)
Q Consensus 270 gv~~L~~~l~~~l~ 283 (413)
|+++++++|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 181
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=151.60 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=60.2
Q ss_pred cccEEEEEeeCCCC--C--chHHHHHHHHccc-cCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 195 NADCIVVLVDACKA--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 195 ~aD~vl~VvD~~~~--~--~~~~~~l~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+||++|+|+|++++ . .....++..+... ...+.|+++|+||+|+.....+.......... ...+++++||++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-SSCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-CCCeEEEEECCCCC
Confidence 69999999999875 2 3333444333322 11579999999999997665554333333222 23589999999999
Q ss_pred CHHHHHHHHHhhC
Q 015083 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|+++++++|.+.+
T Consensus 241 gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 NVDLAFSTLVQLI 253 (255)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.68 E-value=9.5e-17 Score=163.94 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCce------------------------eeeeC------CCCceEEEEEEEEeCCCee
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKL------------------------SIVTN------KPQTTRHRILGICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~------------------------~~vs~------~~~tt~~~~~~~~~~~~~~ 164 (413)
..+|+++|++|+|||||+++|+.... +.+.+ ..+.|.+.....+..++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 34899999999999999999974211 11112 2344554444456677889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCc-------hHHHHHHHHccccCCCCC-EEEEEecC
Q 015083 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~l~~~l~~~~~~~p-~ilV~NK~ 236 (413)
+.||||||+.+ +...+...+..+|++|+|||++++.. .+....+..+.. .+.| +++|+||+
T Consensus 123 ~~iiDtPGh~~---------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGHKG---------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCcHH---------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 99999999632 23345566789999999999998741 233344444444 5677 99999999
Q ss_pred CCCC----hhhHH----HHHHHHHhcCC-----CccEEEcccCCCCCHHHHH
Q 015083 237 DLIK----PGEIA----KKLEWYEKFTD-----VDEVIPVSAKYGHGVEDIR 275 (413)
Q Consensus 237 Dl~~----~~~~~----~~~~~~~~~~~-----~~~v~~iSA~~g~gv~~L~ 275 (413)
|+.. ..... +....+....+ ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9964 12111 12222322201 2468999999999998754
No 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-16 Score=144.54 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeee--eCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~v--s~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+.++|+++|++|||||||+|+|++..+... +..+.++. ......+.+|||||+. .+......+ ...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~--~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHV--KLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCG--GGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcH--HHHHHHHHH---HHh
Confidence 456999999999999999999998775321 11221111 1245689999999963 333222211 222
Q ss_pred hcccccEEEEEeeCC---CCCchHHHHHHHHccc----cCCCCCEEEEEecCCCCChhhHHHH-------HHHHHhcCCC
Q 015083 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKK-------LEWYEKFTDV 257 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~---~~~~~~~~~l~~~l~~----~~~~~p~ilV~NK~Dl~~~~~~~~~-------~~~~~~~~~~ 257 (413)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+.....+... ...+.... .
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR-K 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH-h
Confidence 234599999999998 3445555555554432 1257999999999999865432211 12221111 1
Q ss_pred ccEEEcccCCCCC
Q 015083 258 DEVIPVSAKYGHG 270 (413)
Q Consensus 258 ~~v~~iSA~~g~g 270 (413)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 3689999998865
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=7.3e-16 Score=146.08 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh-
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~- 192 (413)
+..+|+++|.+|+|||||+|+|++..+..+++.+++|.......+...+..+.+|||||+.+. ..+.....+.+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~--~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC--ccchHHHHHHHHHHh
Confidence 456999999999999999999999988777888888887777777778889999999997542 22222222222222
Q ss_pred -cccccEEEEEeeCCC-CCchHHHHHHHHcccc-CCC--CCEEEEEecCCCCChh
Q 015083 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KDK--LPILLVLNKKDLIKPG 242 (413)
Q Consensus 193 -~~~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~-~~~--~p~ilV~NK~Dl~~~~ 242 (413)
...+|++|||+|++. .....+..+...+... ..+ .|+++|+||+|+..++
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999988754 3444443444433321 112 6999999999997543
No 185
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.65 E-value=6.8e-16 Score=145.70 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=89.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (413)
+..+|+++|++|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+.+ +..+.....+.+...+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~--~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE--AGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC--cccchHHHHHHHHHHH
Confidence 56799999999999999999999999877888888888887777888889999999999754 2223333333333333
Q ss_pred --ccccEEEEEeeCCCC-CchHHHHHHHHcccc-CC--CCCEEEEEecCCCC
Q 015083 194 --INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLI 239 (413)
Q Consensus 194 --~~aD~vl~VvD~~~~-~~~~~~~l~~~l~~~-~~--~~p~ilV~NK~Dl~ 239 (413)
..+|++|||+|++.. .......+.+.++.. .. ..|+++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 478999999877542 444443344333321 11 24999999999995
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=4.2e-16 Score=153.96 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEE-----------------------------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~----------------------------------------- 152 (413)
.-|+|+++|.+|||||||+|+|+|..+....... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 4459999999999999999999997753221111 1110
Q ss_pred --------------EEEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhcccccEEEEEeeCCCCC--chH
Q 015083 153 --------------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (413)
Q Consensus 153 --------------~~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~--~~~ 212 (413)
....+.......+.+|||||+.... ...+...+...+..++..+|++|+|+|+.... ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0111222334579999999986531 22344555667788899999999999875432 222
Q ss_pred HHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCCCHHHHHHH
Q 015083 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (413)
Q Consensus 213 ~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~ 277 (413)
...+...+.. .+.|+++|+||+|+...... ........ .....+++++|+.++.|+++.+..
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRS-FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSS-SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCcc-ccccCCeEEEEECChHHhccCCCH
Confidence 2334444444 57899999999999854322 12121111 112247899999999888775443
No 187
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.64 E-value=1.4e-15 Score=147.16 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh--HHHHHHHHHHhhcc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM--LDSMMMKNVRSAGI 194 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--l~~~~~~~~~~~~~ 194 (413)
+|+++|..|||||||++++.+..........+.|.......+ .....+.+|||||. +.+.. + ....+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQ--Erf~~~~l------~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQ--LNYFEPSY------DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSC--SSSCCCSH------HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCc--hhccchhh------hhhhhcc
Confidence 589999999999999999876543321112222221111112 23478999999994 44421 1 1234578
Q ss_pred cccEEEEEeeCCCCCchHHHHHHHHc---cccCCCCCEEEEEecCCCCChhh-------HHH-HHHHHHhcC---CCccE
Q 015083 195 NADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGE-------IAK-KLEWYEKFT---DVDEV 260 (413)
Q Consensus 195 ~aD~vl~VvD~~~~~~~~~~~l~~~l---~~~~~~~p~ilV~NK~Dl~~~~~-------~~~-~~~~~~~~~---~~~~v 260 (413)
+|+++|+|+|+++.......++.+.+ +...++.|+++|+||+|+...+. +.. ..+.+.+.. ...++
T Consensus 72 ~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 72 SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 99999999999886434344443322 22226799999999999986432 111 112222221 12478
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
++|||++ .+|.+.+..|++.+.
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSS
T ss_pred EEeccCC-CcHHHHHHHHHHHHH
Confidence 9999998 599999999887664
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=1.1e-15 Score=136.91 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=99.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (413)
..+|+|+|++|||||||+++|++..+.... .+..+.+...+.+..++ ..+.+|||||... +..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLER--YRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCS--SSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcc--hhhh-------hHHH
Confidence 458999999999999999999988765322 22223333334444444 4566799999632 2222 1223
Q ss_pred cccccEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCCChhhH-HHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|++++|+|.+.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~ld~Sald~~ 177 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDST 177 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 578899999999876432 2222332221111246899999999998642211 111222222233 378899999999
Q ss_pred CHHHHHHHHHhhC
Q 015083 270 GVEDIRDWILTKL 282 (413)
Q Consensus 270 gv~~L~~~l~~~l 282 (413)
|++++++.|.+.+
T Consensus 178 ~v~~l~~~l~~~i 190 (191)
T 1oix_A 178 NVEAAFQTILTEI 190 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998653
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.63 E-value=9.8e-16 Score=153.58 Aligned_cols=164 Identities=25% Similarity=0.308 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhh--hhhHHHHHHHHHHhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~ 192 (413)
..|+|+|++|||||||+++|++.... +.+++.+|.....+.+...+ ..+.++||||+.... ...+...+ ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~ 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRH 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHH
Confidence 36999999999999999999998653 57788888877777777765 789999999985321 11122222 233
Q ss_pred cccccEEEEEeeCC-CCCchHHHHHHHHcccc--CCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCCC
Q 015083 193 GINADCIVVLVDAC-KAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (413)
Q Consensus 193 ~~~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 269 (413)
+..+|.+|+|+|++ .+.........++.... ....|.++|+||+|+.....+......+... + .+++++||+++.
T Consensus 233 ~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~-g-~~vi~iSA~~g~ 310 (416)
T 1udx_A 233 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-G-LAVLPVSALTGA 310 (416)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-T-SCEEECCTTTCT
T ss_pred HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc-C-CeEEEEECCCcc
Confidence 56899999999997 22222221111111110 0358999999999998763333333333322 2 479999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 015083 270 GVEDIRDWILTKLPLGP 286 (413)
Q Consensus 270 gv~~L~~~l~~~l~~~~ 286 (413)
|+++|+++|.+.+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999886544
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.63 E-value=8.2e-17 Score=157.60 Aligned_cols=185 Identities=21% Similarity=0.305 Sum_probs=115.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCceEE-----------------EEEEE-------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------- 157 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt~~-----------------~~~~~------------- 157 (413)
+...|+|+|+||+|||||+|.|. +.++.+.+..+.+++. ....+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 45589999999999999999997 4555555544433321 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC
Q 015083 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (413)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (413)
+...+.++.|+||||+.+.. . .....+|++++|+|+..+.. + +.+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~v~~~~d~vl~v~d~~~~~~-----~-~~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE-T-----------AVADLTDFFLVLMLPGAGDE-----L-QGIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH-H-----------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch-h-----------hHHhhCCEEEEEEcCCCccc-----H-HHHHHHHhccc
Confidence 12357899999999986421 1 11468999999999864321 0 11111001356
Q ss_pred EEEEEecCCCCChhh-HHHHHHHHHh----cC----C-CccEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCccC
Q 015083 229 ILLVLNKKDLIKPGE-IAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVS 295 (413)
Q Consensus 229 ~ilV~NK~Dl~~~~~-~~~~~~~~~~----~~----~-~~~v~~iSA~~g~gv~~L~~~l~~~l~---~~~~~~~~~~~t 295 (413)
.++|+||+|+..... .....+.+.. .. . ..+++++||++|.|+++|++.|.+..+ ++++ + ....+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~ 273 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRR 273 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHH
Confidence 788899999754222 1111222211 11 1 357899999999999999999988764 2222 2 12222
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCC
Q 015083 296 EHPERFFVGEIIREKIFMQYRNEV 319 (413)
Q Consensus 296 ~~~~~~~~~eiiReki~~~~~~ei 319 (413)
. ...+++.+++|++++..++++.
T Consensus 274 ~-~~~~~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 274 E-QDVKWMWALVHERLHQRLVGSA 296 (337)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTSSH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCc
Confidence 2 3467889999999999888754
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=149.88 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=84.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC------CceE--EEEEEEEeCCC--eeEEEEeCCCCchh-----hhhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP------QTTR--HRILGICSGPE--YQMILYDTPGIIEK-----KIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~------~tt~--~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~~ 180 (413)
.+|+|+|++|+|||||+|+|++.........+ ..|. ......+...+ ..+.+|||||+.+. .+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 47999999999999999999886543222111 1222 22222233333 37899999997432 2233
Q ss_pred HHHHHHHHHHhhcc-------------cccEEEEEeeC-CCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHH
Q 015083 181 LDSMMMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (413)
Q Consensus 181 l~~~~~~~~~~~~~-------------~aD~vl~VvD~-~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 246 (413)
+...+......++. .+|+++|+++. .++....+..+...+. .+.|+|+|+||+|+.....+..
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHHH
Confidence 33322222222222 23578888876 5566666655555443 5799999999999987766543
Q ss_pred HHHHH---HhcCCCccEEEcccCCCCC---HHHHHHHHHhhCC
Q 015083 247 KLEWY---EKFTDVDEVIPVSAKYGHG---VEDIRDWILTKLP 283 (413)
Q Consensus 247 ~~~~~---~~~~~~~~v~~iSA~~g~g---v~~L~~~l~~~l~ 283 (413)
....+ ....+ .+++++||++|.| +..+...|.+.+|
T Consensus 195 ~k~~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 195 LKKRILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 22222 22223 4789999999987 3344555656655
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.58 E-value=3.3e-15 Score=140.24 Aligned_cols=168 Identities=20% Similarity=0.157 Sum_probs=105.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh-----CCceeeeeCCCCceEE------------EEEEEE----------------
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC---------------- 158 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~-----~~~~~~vs~~~~tt~~------------~~~~~~---------------- 158 (413)
..+...++++|.+|||||||++.|. +.++..+...++.+.. ......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3466789999999999999999998 8787777655542210 000000
Q ss_pred -------------e-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHH-----HHHH
Q 015083 159 -------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI-----LEEG 219 (413)
Q Consensus 159 -------------~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~-----l~~~ 219 (413)
. ..++.+++|||||..+. ..+.. +......++.. +++++|+|+.........+ ....
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~--~~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMET--FLFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHH--HHHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccch--hhhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 0 01247999999996432 11111 12223344567 9999999987654433221 1111
Q ss_pred ccccCCCCCEEEEEecCCCCChhhHHHHHHH----------------------------HHhcCCCccEEEcccCCCCCH
Q 015083 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGV 271 (413)
Q Consensus 220 l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----------------------------~~~~~~~~~v~~iSA~~g~gv 271 (413)
... .+.|+++|+||+|+..........+. ........+++++||++|.|+
T Consensus 167 ~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi 244 (262)
T 1yrb_A 167 DLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 244 (262)
T ss_dssp HHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH
T ss_pred hcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccH
Confidence 112 46899999999999865432211111 122223347899999999999
Q ss_pred HHHHHHHHhhCCCC
Q 015083 272 EDIRDWILTKLPLG 285 (413)
Q Consensus 272 ~~L~~~l~~~l~~~ 285 (413)
++|+++|.+.++.+
T Consensus 245 ~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 245 EDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999877543
No 193
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.58 E-value=1.4e-17 Score=167.88 Aligned_cols=244 Identities=16% Similarity=0.186 Sum_probs=141.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCC------------------------ceEEEE----EEEEeCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~------------------------tt~~~~----~~~~~~~ 161 (413)
..|+++|.+|+||||+++.|.+ .++..++..+. +++++. ..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999965 34443332211 222211 0111125
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCC-C-EEEEEecCCCC
Q 015083 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~-p-~ilV~NK~Dl~ 239 (413)
++.++++||||..+.. ..+...+ .. ...+..+|.+++|+|+..+.... . ...... ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~-~~l~~~l-~~-i~~~~~~d~vllVvda~~g~~~~-~-~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQQAG-I-QAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSH-HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGGGHH-H-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCcccc-HHHHHHH-HH-HHHHhcCcceeEEeeccccHHHH-H-HHHHHh---hcccCCeEEEEeCCCCc
Confidence 6789999999975421 1121111 11 22234799999999997664221 1 112222 335 5 89999999986
Q ss_pred Chhh-HHHHHHHHH-------------hcCCCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHH
Q 015083 240 KPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVG 304 (413)
Q Consensus 240 ~~~~-~~~~~~~~~-------------~~~~~~~v~~iSA~~g~g-v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~ 304 (413)
.... .......+. ....+.+..++|+..|.| +..|++.+.+.++ .+. ++.+.++...
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~-------e~~-~~~~~k~~~~ 323 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD-------EKT-EESIDAIMRG 323 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC-------SSS-STTHHHHCCS
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhh-HHHHHHHHcC
Confidence 4322 222221111 111344556778888888 8877766655543 233 5567777777
Q ss_pred HHHHHHHHhhcCC------------CCCceeEE-EEEEEEecCCCeeEEEEEEE----EeeCCcceEEeecCChHHHHHH
Q 015083 305 EIIREKIFMQYRN------------EVPYACQV-NVVSYKTRPTAKDFIQVEIV----VEKNSQKIILIGKGGKALKLLA 367 (413)
Q Consensus 305 eiiReki~~~~~~------------eipys~~v-~v~~~~~~~~~~~~i~~~~~----~~r~~~~~i~iG~~g~~ik~i~ 367 (413)
++.++.++..+++ ++||...+ ....+...+.....+.+.++ +||++++.| +|+.+++|+
T Consensus 324 ~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~~sr~~rI~ 399 (432)
T 2v3c_C 324 KFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----KASRIRRIA 399 (432)
T ss_dssp CCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----CHHHHHHHH
Confidence 7888999998886 99996543 23334322222345666677 899999954 799999999
Q ss_pred HHHHH---HHHHHhC
Q 015083 368 TAARL---DIEDFLQ 379 (413)
Q Consensus 368 ~~a~~---~l~~~~~ 379 (413)
..|+. ++.+++.
T Consensus 400 ~gsg~~~~~v~~ll~ 414 (432)
T 2v3c_C 400 RGSGTTENDVREVLR 414 (432)
T ss_dssp HHTTSCHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHH
Confidence 99966 6666654
No 194
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.2e-15 Score=132.60 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceee--eeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~--vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (413)
+.++|+++|.+|||||||+|+|++..+.. ++..+.++. ...+..+.+|||||+.. +..... .....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~--~~~~~~---~~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVK--LRYKLS---DYLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCB--SSCCHH---HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCch--HHHHHH---HHHHh
Confidence 45699999999999999999999876532 122222222 12557899999999643 222211 12233
Q ss_pred hcccccEEEEEeeCCCCC---chHHHHHHHHccc----cCCCCCEEEEEecCCCCChhhHHHHH
Q 015083 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKL 248 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~----~~~~~p~ilV~NK~Dl~~~~~~~~~~ 248 (413)
.+..+|++|+|+|++... .....++...+.. ...+.|+++|+||+|+..........
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 178 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK 178 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHH
Confidence 346799999999998222 2222344443322 12579999999999998655444333
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.57 E-value=4.3e-15 Score=135.77 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=98.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC-----ceeeeeCCCCceEE---------EEEEE-----E------------eCCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRH---------RILGI-----C------------SGPE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~-----~~~~vs~~~~tt~~---------~~~~~-----~------------~~~~ 162 (413)
+.++|+++|++|||||||+++|++. +...+...++++.+ ....+ + ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3458999999999999999999764 34444444443311 00100 0 1234
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~ 242 (413)
..+.+|||||....+.. ....++.+++|+|++.+...... .... .+.|.++|+||+|+....
T Consensus 109 ~d~iiidt~G~~~~~~~------------~~~~~~~~i~vvd~~~~~~~~~~----~~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD------------FDLGENYRVVMVSVTEGDDVVEK----HPEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGGGG------------CCCSCSEEEEEEEGGGCTTHHHH----CHHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCCch------------hccccCcEEEEEeCCCcchhhhh----hhhh--hhcCCEEEEecccCCcch
Confidence 67899999994211110 01256889999999876432211 1111 357999999999986431
Q ss_pred --hHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 243 --~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
........+.......+++++||++|.|+++|+++|.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 23334444444334468999999999999999999998764
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=147.57 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee------CCCCceEEEEEEE-EeCCC--eeEEEEeCCCCchhh-----hhhH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT------NKPQTTRHRILGI-CSGPE--YQMILYDTPGIIEKK-----IHML 181 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs------~~~~tt~~~~~~~-~~~~~--~~~~l~DtpG~~~~~-----~~~l 181 (413)
..|+|+|++|+|||||+|.|+|....... ....++.....+. +...+ ..+.+|||||+.... +..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 47899999999999999999997753221 0112222111111 12222 368999999985421 1112
Q ss_pred HHHHHHHH-----------Hhhccc--ccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH
Q 015083 182 DSMMMKNV-----------RSAGIN--ADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (413)
Q Consensus 182 ~~~~~~~~-----------~~~~~~--aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 247 (413)
...+.... +..+.+ +|++||+++++ +++...+..+...+. .+.|+|+|+||+|+.....+...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 11111111 122333 55688888776 577777654555443 47899999999999876655432
Q ss_pred H----HHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCcee
Q 015083 248 L----EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (413)
Q Consensus 248 ~----~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~ 323 (413)
. ..+... + .+++.+||+++.++.+++..| .+.+||++
T Consensus 189 k~~i~~~~~~~-~-i~~~~~sa~~~~~v~~~~~~l-------------------------------------~~~iPfav 229 (418)
T 2qag_C 189 KKQIMKEIQEH-K-IKIYEFPETDDEEENKLVKKI-------------------------------------KDRLPLAV 229 (418)
T ss_dssp HHHHHHHHHHH-T-CCCCCCC------------------------------------------------------CCEEE
T ss_pred HHHHHHHHHHc-C-CeEEeCCCCCCcCHHHHHHHH-------------------------------------HhhCCcce
Confidence 2 222222 2 467889999888776543333 34566665
Q ss_pred EEEEEEEEecC---CCeeEEEEEEEEeeCCcc------eEEeecCChHHHHHHH
Q 015083 324 QVNVVSYKTRP---TAKDFIQVEIVVEKNSQK------IILIGKGGKALKLLAT 368 (413)
Q Consensus 324 ~v~v~~~~~~~---~~~~~i~~~~~~~r~~~~------~i~iG~~g~~ik~i~~ 368 (413)
......+.... -++.+....+.|++++|. -+++|++...++..-.
T Consensus 230 v~s~~~~~~~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~ 283 (418)
T 2qag_C 230 VGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTN 283 (418)
T ss_dssp CC-------------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHH
T ss_pred eecceeEecCCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 44433333211 123445666788888887 4589999998887664
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=2.2e-14 Score=140.86 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=63.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (413)
.+|+|+|.||||||||+|+|++.. ..++++|++|.....+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 379999999999999999999987 4578889999887776666654 4799999999864221
Q ss_pred hhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015083 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
. ...+...+...++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 11111233455789999999999986
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.48 E-value=1.2e-14 Score=158.02 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=79.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCC---------------ceEEEEEEEEeC----------------CC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHRILGICSG----------------PE 162 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~---------------tt~~~~~~~~~~----------------~~ 162 (413)
+..+|+|+|++|+|||||+|+|++....+.+..++ .|.......+.+ .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34589999999999999999998754332222122 121111111112 26
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
..++||||||+.+ +. ..+..+++.+|++|+|+|++++...++..++..+.. .+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d--f~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD--FS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS--SC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh--hH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 7899999999754 22 235556789999999999999887777666655444 689999999999986
No 199
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.48 E-value=6.2e-16 Score=158.31 Aligned_cols=258 Identities=17% Similarity=0.180 Sum_probs=142.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCce-----------E--EEEEEE----------------E
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt-----------~--~~~~~~----------------~ 158 (413)
+...|+++|++||||||++++|. |.++..++..+... + ..+... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 88777665432111 0 111111 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCE-EEEEecCC
Q 015083 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilV~NK~D 237 (413)
.+.++.++||||||..+... .+...+.. +..+ ..+|.+++|+|+..+.... .....+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~~-i~pd~vllVvDa~~g~~~~--~~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VANA-IQPDNIVYVMDASIGQACE--AQAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHHH-HCCSEEEEEEETTCCTTHH--HHHHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHhh-hcCceEEEEEeccccccHH--HHHHHHHh---hcCceEEEEeCCc
Confidence 12567899999999764221 22222211 1122 2799999999998875422 12222222 2674 89999999
Q ss_pred CCChhh-HHHHHHHHH-------------hcCCCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCccCCc-hhhH
Q 015083 238 LIKPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEH-PERF 301 (413)
Q Consensus 238 l~~~~~-~~~~~~~~~-------------~~~~~~~v~~iSA~~g~g-v~~L~~~l~~~l~~~~~~~~~~~~t~~-~~~~ 301 (413)
...... .......+. ....+.+.+++||.+|.| +.+|++++.+...+..........+.. ....
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d 331 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRD 331 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCC
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 874322 112222211 111245667799999999 999999998762111111111111211 0111
Q ss_pred HHHHHHHHH---HHhhcCCCCCceeE--EEEEEEEecCCCeeEEEEEEE----EeeCCcc-eEEeecCChHHHHHHHHHH
Q 015083 302 FVGEIIREK---IFMQYRNEVPYACQ--VNVVSYKTRPTAKDFIQVEIV----VEKNSQK-IILIGKGGKALKLLATAAR 371 (413)
Q Consensus 302 ~~~eiiRek---i~~~~~~eipys~~--v~v~~~~~~~~~~~~i~~~~~----~~r~~~~-~i~iG~~g~~ik~i~~~a~ 371 (413)
+..++.+.. -+..+-..+|+.+. +....+...+.....+.+.+. .||.+|+ ..+||++|+.+++|+.-|.
T Consensus 332 ~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~gsg 411 (504)
T 2j37_W 332 MYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSG 411 (504)
T ss_dssp CHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHhcC
Confidence 111111000 01122346888654 321111111111112222233 5788888 8899999999999999997
Q ss_pred H---HHHHHhC
Q 015083 372 L---DIEDFLQ 379 (413)
Q Consensus 372 ~---~l~~~~~ 379 (413)
. ++.+++.
T Consensus 412 ~~~~~v~~ll~ 422 (504)
T 2j37_W 412 VSTRDVQELLT 422 (504)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 7 7766664
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=1.1e-13 Score=136.66 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=63.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCC---------------------CeeEEEEeCCCCch
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---------------------EYQMILYDTPGIIE 175 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~---------------------~~~~~l~DtpG~~~ 175 (413)
+|+|+|.||||||||+|+|++.. ..+++.+++|.....+..... +..+.+|||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 69999999999999999999875 346777887776555554332 35799999999864
Q ss_pred hhh--hhHHHHHHHHHHhhcccccEEEEEeeCCC
Q 015083 176 KKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (413)
Q Consensus 176 ~~~--~~l~~~~~~~~~~~~~~aD~vl~VvD~~~ 207 (413)
... ..+. ..+...++.||++++|+|+++
T Consensus 82 ~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 211 1222 234455789999999999985
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.44 E-value=3.8e-13 Score=129.51 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCC-------CCceEEEEEEE-EeC--CCeeEEEEeCCCCch-----hhhhh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILGI-CSG--PEYQMILYDTPGIIE-----KKIHM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~-------~~tt~~~~~~~-~~~--~~~~~~l~DtpG~~~-----~~~~~ 180 (413)
.+|+|+|++|+|||||+|+|++......+.. ..+......+. ... ....+.+|||||+.. ..+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 4899999999999999999988633222211 11111111121 221 235789999999732 11222
Q ss_pred HHHHHHH----HHHhh---------cccccEEEEEeeCCC-CCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH-
Q 015083 181 LDSMMMK----NVRSA---------GINADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA- 245 (413)
Q Consensus 181 l~~~~~~----~~~~~---------~~~aD~vl~VvD~~~-~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~- 245 (413)
+...+.. ..... ...+++++|+++++. ++......+...+ ..+.|+++|+||+|+....++.
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHHH
Confidence 2221111 11111 123456777777654 4766554443333 2467999999999998765443
Q ss_pred ---HHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 246 ---KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 246 ---~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
...+..... + .+++++||++| |+++++..+.+.+.
T Consensus 176 ~~~~~~~~~~~~-~-~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 176 LKKRILDEIEEH-N-IKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHT-T-CCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-CeEEecCCccc-cccHHHHHHHHHhh
Confidence 222233332 3 47899999999 99999988877653
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=4.5e-14 Score=140.06 Aligned_cols=191 Identities=18% Similarity=0.123 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (413)
..+|+|+|.||||||||+|+|++... .++++|++|.....+.+...+ .++.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34899999999999999999999887 578899999887777766543 359999999985422
Q ss_pred hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCC
Q 015083 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (413)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (413)
.....+...+..+++.||++++|+|+++... +.. +.. ...| +|++|....+-.......+......
T Consensus 101 --s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 --HNGQGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chhhHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 1122233345667889999999999975311 111 111 2234 5555554322211112222221111
Q ss_pred ccEEEcc--cCCCCCHHHHHHHHHhhCCCC-CCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCCceeEEE
Q 015083 258 DEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVN 326 (413)
Q Consensus 258 ~~v~~iS--A~~g~gv~~L~~~l~~~l~~~-~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eipys~~v~ 326 (413)
....+.| ++.+.+..++++.+...++++ ++.......+.. . .+++ ++++......++|++.+.
T Consensus 167 ~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~--e---~e~i-~~~~llt~KPviy~~Nv~ 232 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDK--E---IEVL-NKHLFLTSKPMVYLVNLS 232 (396)
T ss_dssp TCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHH--H---HHHH-HHHCCGGGSCEEEEEECC
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHH--H---HHHH-HHHHHHhCCceEEEEEec
Confidence 2223344 577789999999999999887 443100011111 1 2455 466666788899987764
No 203
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.37 E-value=3.5e-12 Score=127.50 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=117.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC----ceeeeeCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~----~~~~vs~~~~tt~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (413)
+.+.++|+|++|+|||||+|.|+|. ...+......+|+... +..... .++.++|+||+.. ....+...+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~-~~~~~~~~L~~- 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGS-TNFPPDTYLEK- 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGG-SSCCHHHHHHH-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccc-hHHHHHHHHHH-
Confidence 4458999999999999999999983 3332222333333211 222222 3689999999853 22223333211
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCC------------ChhhHHHHHHHHH----
Q 015083 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~------------~~~~~~~~~~~~~---- 252 (413)
. .+...+..++ ++... ...+...+...+.. .++|+++|+||.|+. ....+......+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2344566665 77654 35555556665555 578999999999974 1222333333331
Q ss_pred -hc-CCCccEEEccc--CCCCCHHHHHHHHHhhCCCCCCCC-----CC-CccCCchhhHHHHHHHHHHHHh
Q 015083 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYY-----PK-DIVSEHPERFFVGEIIREKIFM 313 (413)
Q Consensus 253 -~~-~~~~~v~~iSA--~~g~gv~~L~~~l~~~l~~~~~~~-----~~-~~~t~~~~~~~~~eiiReki~~ 313 (413)
.. .....+|++|+ ..+.|+++|.+.|.+.+|++++.+ |. ...+.+..+....+.+++..+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23457899999 777789999999999999998766 33 2233455666777777776654
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.37 E-value=1.2e-12 Score=119.75 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCEEEEEecCCCCChh--hHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 015083 226 KLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 226 ~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l 282 (413)
..|.++|+||+|+.... ........+.......+++++||++|.|+++|+++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999986432 2333334444333346899999999999999999998754
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.36 E-value=2.5e-14 Score=141.64 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHHH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~-----~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~ 188 (413)
.+|+++|.||+|||||+|+|++. ....++..++||+......+. ..+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999987 556688999999987664433 248999999996432 11121111111
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCCC
Q 015083 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g 268 (413)
. ..-...|.+++++|+..............+.. .+.|+++++||+|...........+.+.+..+ ..+.+.++...
T Consensus 240 ~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g-~~l~p~~~~~~ 315 (369)
T 3ec1_A 240 I-TPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLG-ELLSPPSKRYA 315 (369)
T ss_dssp H-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT-TTBCSSCGGGT
T ss_pred H-hcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcC-CccCCCCchhh
Confidence 1 01167899999999843211100001223344 57899999999999866655555566655544 35677777655
Q ss_pred CCH
Q 015083 269 HGV 271 (413)
Q Consensus 269 ~gv 271 (413)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 444
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.32 E-value=7.1e-14 Score=138.30 Aligned_cols=145 Identities=23% Similarity=0.215 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc------eeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHH
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~------~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~ 187 (413)
.+|+++|.+|+|||||+|+|++.. ...++..++||+......+.. .+.++||||+.... ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999998853 445789999998876644332 38999999996532 1112222211
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.. ......+.++|++|+..............+.. .+.|+++|+||+|...........+.+.+..+. .+.+.++..
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~ 313 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPEE 313 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHHH
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchhh
Confidence 11 11367889999999843211111111223343 578999999999998776666666666665443 456666543
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=2.4e-13 Score=135.00 Aligned_cols=182 Identities=21% Similarity=0.186 Sum_probs=114.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (413)
..+|+|+|+||||||||+|+|++...+.++.+|++|..+..+.+...+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 458999999999999999999998876789999999988888776654 468999999985421
Q ss_pred --hhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC------CChh-------
Q 015083 178 --IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL------IKPG------- 242 (413)
Q Consensus 178 --~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl------~~~~------- 242 (413)
...+. ..+...++.+|++++|+|+... .+++.|.|++|- .+..
T Consensus 100 s~~e~L~----~~fl~~ir~~d~il~Vvd~~~d------------------~~i~~v~~~~dP~~di~ildeel~~~D~~ 157 (392)
T 1ni3_A 100 STGVGLG----NAFLSHVRAVDAIYQVVRAFDD------------------AEIIHVEGDVDPIRDLSIIVDELLIKDAE 157 (392)
T ss_dssp CSSSSSC----HHHHHHHTTCSEEEEEEECCCT------------------TCSSCCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHhcccc------------------ceeeeeccccCcchhhhhchhhhHHHHHH
Confidence 11122 2344556799999999998651 111113344441 1110
Q ss_pred hHHHHHHHHHhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCC-CCCCCCCccCCchhhHHHHHHHHHHHHhhcCCCCC
Q 015083 243 EIAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (413)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~v~~iSA~~g~gv~~L~~~l~~~l~~~-~~~~~~~~~t~~~~~~~~~eiiReki~~~~~~eip 320 (413)
.+......+... ......+ + ++.+.++.++++.+...+..+ +..++ ...++. + .+++| +++....+.++
T Consensus 158 ~~~k~~~~l~~~~~~~g~ti-~-sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~~~-e----~e~i~-~~~~lt~kp~~ 228 (392)
T 1ni3_A 158 FVEKHLEGLRKITSRGANTL-E-MKAKKEEQAIIEKVYQYLTETKQPIRK-GDWSNR-E----VEIIN-SLYLLTAKPVI 228 (392)
T ss_dssp HHHHHHHHHHHTTCCSSCSS-S-HHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCCHH-H----HHHHH-TTCCGGGSCEE
T ss_pred HHHHHHHHHHHHHHhcCCcc-c-cccHHHHHHHHHHHHHHhccCCceeec-CCCCHH-H----HHHHH-HHhhhccCceE
Confidence 111111222221 1100000 1 566778889999998888877 65554 333333 2 26666 55666778888
Q ss_pred ceeEEEE
Q 015083 321 YACQVNV 327 (413)
Q Consensus 321 ys~~v~v 327 (413)
|.+.+..
T Consensus 229 y~~Nv~e 235 (392)
T 1ni3_A 229 YLVNMSE 235 (392)
T ss_dssp EEEECCH
T ss_pred EEEEecc
Confidence 8876643
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=116.45 Aligned_cols=146 Identities=13% Similarity=0.203 Sum_probs=85.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceee---eeCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhh-----hhhHHHHHH
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKK-----IHMLDSMMM 186 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~---vs~~~~tt~~~~~~~~~~~~--~~~~l~DtpG~~~~~-----~~~l~~~~~ 186 (413)
.++|+|++|+|||||+|.|+|..+.. ....++.++..+..+....+ ..+.++|+||+.... +..+...+.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 39999999999999999999975421 11234455544433333333 268999999986421 111111222
Q ss_pred HHH----Hh---------hccccc---EEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHH
Q 015083 187 KNV----RS---------AGINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (413)
Q Consensus 187 ~~~----~~---------~~~~aD---~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 250 (413)
..+ .. ....++ +++|++|+.++....+..++..+. .+.|+|+|+||+|...+.++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 211 11 112333 577888988888888877776664 47899999999999987776655554
Q ss_pred HHh--cCCCccEEEccc
Q 015083 251 YEK--FTDVDEVIPVSA 265 (413)
Q Consensus 251 ~~~--~~~~~~v~~iSA 265 (413)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 443 112235666664
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.08 E-value=5.1e-10 Score=105.86 Aligned_cols=129 Identities=18% Similarity=0.298 Sum_probs=78.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee-------CCCCceEEEEEEEEeCCC---eeEEEEeCCCCchhhh-----hh
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKI-----HM 180 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs-------~~~~tt~~~~~~~~~~~~---~~~~l~DtpG~~~~~~-----~~ 180 (413)
.+++|+|++|+|||||+|.|+|....... +.+.++.....+.+.... ..+.++|+||+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 47999999999999999999876533211 112222222223322211 3689999999854211 12
Q ss_pred HHHHHHHHHHh--------------hcccccEEEEEeeCC-CCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHH
Q 015083 181 LDSMMMKNVRS--------------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (413)
Q Consensus 181 l~~~~~~~~~~--------------~~~~aD~vl~VvD~~-~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 245 (413)
+...+...... ++..++++++++|.. ++..+.+..+...+.. . .++|+|+||+|.....+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 22222222111 234578999999955 7778877777776665 4 8999999999998876654
Q ss_pred HH
Q 015083 246 KK 247 (413)
Q Consensus 246 ~~ 247 (413)
..
T Consensus 160 ~~ 161 (270)
T 3sop_A 160 EF 161 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.06 E-value=3.8e-10 Score=109.78 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=51.9
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCC---------CCc---hHHHHHHHHcccc
Q 015083 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------APE---RIDEILEEGVGDH 223 (413)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~---------~~~---~~~~~l~~~l~~~ 223 (413)
..+..++..+.+|||+| ++.++ ..+..++++++++|||+|++. ... ....++...+...
T Consensus 154 ~~~~~~~v~l~iwDtaG--Qe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 154 YDFVVKDIPFHLIDVGG--QRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp EEEESSSCEEEEEECCS--CHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred EEEEeeeeeeccccCCC--ccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 34556778899999999 44433 346778999999999999872 122 2223333333321
Q ss_pred -CCCCCEEEEEecCCCCC
Q 015083 224 -KDKLPILLVLNKKDLIK 240 (413)
Q Consensus 224 -~~~~p~ilV~NK~Dl~~ 240 (413)
..+.|++|++||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 15789999999999853
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=1.6e-09 Score=104.08 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=71.5
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCC---chHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~---~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.+.+||| ++.+..+ .+.+++++|++|+|+|++++. .....|+. .++. .++|+++|+||+|+.+
T Consensus 64 ~~~iwD~----qer~~~l-------~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~-~~~~--~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV----LHRKNLL-------TKPHVANVDQVILVVTVKMPETSTYIIDKFLV-LAEK--NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE----CCCSCEE-------TTTTEESCCEEEEEECSSTTCCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCC
T ss_pred eEEEEEE----cccccee-------eccccccCCEEEEEEeCCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEeHHHcCC
Confidence 7999999 2344444 335689999999999998764 22334443 3344 5799999999999987
Q ss_pred hhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 015083 241 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~ 281 (413)
...+.+..++........+++++||++|.|+++++..+...
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 65432222222221111579999999999999999988643
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.93 E-value=1.9e-10 Score=109.62 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=39.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (413)
+..+|+++|.||||||||+|+|++.....+++.|++|++...... +..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCC
Confidence 446899999999999999999999998889999999987653222 347899999999653
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.89 E-value=1.3e-09 Score=106.98 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=77.6
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC---------C---chHHHHHHHHcccc-
Q 015083 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------P---ERIDEILEEGVGDH- 223 (413)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~---------~---~~~~~~l~~~l~~~- 223 (413)
.+..++..+.+|||+| +..+..+ +..++.+++++|||+|+++. . .....++...+...
T Consensus 187 ~~~~~~~~l~iwDt~G--Qe~~r~~-------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 187 HFTFKDLHFKMFDVGG--QRSERKK-------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EEeeCCeeEEEEeCCC--chhhhHH-------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455678999999999 4444433 55668999999999999863 1 22223333333321
Q ss_pred CCCCCEEEEEecCCCCChh-----------------hHHHHHHHHH----hc-----CCCccEEEcccCCCCCHHHHHHH
Q 015083 224 KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRDW 277 (413)
Q Consensus 224 ~~~~p~ilV~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~v~~iSA~~g~gv~~L~~~ 277 (413)
..+.|++||+||+|+.... ...+...++. .. .....+++|||++|.||.+++++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 1579999999999984211 1222222222 11 12346899999999999999999
Q ss_pred HHhhC
Q 015083 278 ILTKL 282 (413)
Q Consensus 278 l~~~l 282 (413)
+.+.+
T Consensus 338 v~~~i 342 (353)
T 1cip_A 338 VTDVI 342 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88755
No 214
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=3.2e-09 Score=110.44 Aligned_cols=61 Identities=30% Similarity=0.377 Sum_probs=45.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEe-------CCCeeEEEEeCCCCchh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-------GPEYQMILYDTPGIIEK 176 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~-------~~~~~~~l~DtpG~~~~ 176 (413)
+..+|+|+|.||||||||+|+|+|....+ +.+++|+....+++. ..+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 44589999999999999999999987542 445555444444432 35678999999999653
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.77 E-value=5.5e-09 Score=102.81 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=73.6
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCC---------C---chHHHHHHHHccc-c
Q 015083 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------P---ERIDEILEEGVGD-H 223 (413)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~---------~---~~~~~~l~~~l~~-~ 223 (413)
.+..++..+.+|||||. ..+. ..+..++.+++++|||+|.++. . .....++...+.. .
T Consensus 195 ~~~~~~~~l~i~Dt~Gq--~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQ--RSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccch--hhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34556789999999994 3332 2356678999999999999872 1 2222333333332 1
Q ss_pred CCCCCEEEEEecCCCCCh------------------hhHHHHHHHH----Hhc-----CCCccEEEcccCCCCCHHHHHH
Q 015083 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 224 ~~~~p~ilV~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
..+.|+|||+||+|+... ........++ ... .....+++|||++|.||+++++
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 257899999999998521 1122222222 111 1224678999999999999999
Q ss_pred HHHhhC
Q 015083 277 WILTKL 282 (413)
Q Consensus 277 ~l~~~l 282 (413)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.75 E-value=3.5e-08 Score=99.05 Aligned_cols=148 Identities=17% Similarity=0.258 Sum_probs=83.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCce-------------EEEEEEE----------------E
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------C 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt-------------~~~~~~~----------------~ 158 (413)
++..|+++|.+|+||||++..|. |.++..+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999986 55655444222110 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015083 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
...++.++|+||||..+.....+ ..+ ..... ...+|.+++|+|++.+..... ....... .-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm-~el-~~i~~-~~~pd~vlLVvDA~~gq~a~~--~a~~f~~--~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALI-EEM-KQISN-VIHPHEVILVIDGTIGQQAYN--QALAFKE--ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHH-HHH-HHHHH-HHCCSEEEEEEEGGGGGGHHH--HHHHHHH--SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHH-HHH-HHHHH-hhcCceEEEEEeCCCchhHHH--HHHHHHh--hCCCeEEEEECCCC
Confidence 11347899999999754322222 222 11222 336899999999987533222 2222222 23566799999998
Q ss_pred CChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015083 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
...... ....... .+ .|+.+++. |+++++|
T Consensus 252 ~~~gG~--~ls~~~~-~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 SAKGGG--ALSAVAA-TG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp CSSHHH--HHHHHHT-TC-CCEEEEEC--SSSTTCE
T ss_pred cccccH--HHHHHHH-HC-CCEEEEEc--CCChHHh
Confidence 754322 1222222 22 47777764 7777664
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=4.3e-08 Score=93.16 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=72.0
Q ss_pred EeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHH
Q 015083 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (413)
Q Consensus 168 ~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 247 (413)
-+.||+... ..+++...+..+|++++|+|++.+.......+.+++ .++|.++|+||+|+.+.......
T Consensus 4 ~w~PGhm~k--------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAK--------ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTH--------HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHH--------HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 357886432 234567778999999999999987755434455544 47899999999999886555555
Q ss_pred HHHHHhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 015083 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 248 ~~~~~~~~~~~~v~~iSA~~g~gv~~L~~~l~~~l~ 283 (413)
.+++... + .+++++||++|.|+++|++.+.+.++
T Consensus 72 ~~~~~~~-g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 72 KEHFENQ-G-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHTT-T-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHhc-C-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5555432 2 37899999999999999998877654
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.69 E-value=1.9e-08 Score=99.97 Aligned_cols=116 Identities=9% Similarity=0.113 Sum_probs=75.2
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCC----------CC--chHHHHHHHHcccc-C
Q 015083 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGDH-K 224 (413)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~----------~~--~~~~~~l~~~l~~~-~ 224 (413)
+..++..+.+|||+| +..+..+ +..++++++++|||+|+++ .. .....++....... .
T Consensus 212 ~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 212 FQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp EEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred eecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 445678999999999 4454443 5566899999999999986 21 22333444444321 2
Q ss_pred CCCCEEEEEecCCCCChhh--------------------------------HHHHHHH----HHhc-------CCCccEE
Q 015083 225 DKLPILLVLNKKDLIKPGE--------------------------------IAKKLEW----YEKF-------TDVDEVI 261 (413)
Q Consensus 225 ~~~p~ilV~NK~Dl~~~~~--------------------------------~~~~~~~----~~~~-------~~~~~v~ 261 (413)
.+.|++||+||+|+..... ......+ +... .....++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 5789999999999843211 1111111 1111 0123467
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 015083 262 PVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 262 ~iSA~~g~gv~~L~~~l~~~l 282 (413)
.|||+++.||+.+|.++.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHH
Confidence 899999999999999987654
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.68 E-value=1.5e-08 Score=99.44 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=70.4
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCC---------CCc---hHHHHHHHHcccc-CCCC
Q 015083 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------APE---RIDEILEEGVGDH-KDKL 227 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~---------~~~---~~~~~l~~~l~~~-~~~~ 227 (413)
....+.+|||+| ++.+..+ +..++++++++|||+|.+. ... ....++....... ..+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 357899999999 4454444 4566899999999999871 122 2223333333321 1578
Q ss_pred CEEEEEecCCCCChh-----------------------hHHHHHHHHHh----c----------CCCccEEEcccCCCCC
Q 015083 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK----F----------TDVDEVIPVSAKYGHG 270 (413)
Q Consensus 228 p~ilV~NK~Dl~~~~-----------------------~~~~~~~~~~~----~----------~~~~~v~~iSA~~g~g 270 (413)
|++||+||+|+.... ...+....+.. . .....+++|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984211 11122222111 0 1123468999999999
Q ss_pred HHHHHHHHHhhC
Q 015083 271 VEDIRDWILTKL 282 (413)
Q Consensus 271 v~~L~~~l~~~l 282 (413)
|+++++++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.66 E-value=3.2e-10 Score=114.24 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=115.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-------CCceeeeeCCCCceE--------------EEEEE---------------EE
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------IC 158 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~-------~~~~~~vs~~~~tt~--------------~~~~~---------------~~ 158 (413)
+..|+++|.+|+||||++..|. |.++..+...++... +.+.. ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999986 666665544332210 00000 00
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecCC
Q 015083 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~D 237 (413)
...++.++|+||||..+.... +...+. .+ ..+..+|.+++|+|+..+... ...... .. ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~-l~~~L~-~~-~~~~~p~~vllVvda~~g~~~-~~~~~~-f~---~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA-MMDEIK-QV-HASINPVETLFVVDAMTGQDA-ANTAKA-FN---EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH-HHHHHH-HH-HHHSCCSEEEEEEETTBCTTH-HHHHHH-HH---HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHH-HHHHHH-HH-HHhhcCcceeEEeecchhHHH-HHHHHH-Hh---ccCCCeEEEEecCC
Confidence 124678999999996542211 211111 11 224478999999999866322 222221 11 2244 357999999
Q ss_pred CCChh-hHHHHHHHHHhc----------C---CCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCccCCchhhHH
Q 015083 238 LIKPG-EIAKKLEWYEKF----------T---DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFF 302 (413)
Q Consensus 238 l~~~~-~~~~~~~~~~~~----------~---~~~~v~~iSA~~g~g-v~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~ 302 (413)
..... ............ . .+.+--.+|+..|.| +..|++.+.+.+.. +.......+..
T Consensus 252 ~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~-------~~~~~l~~k~~ 324 (433)
T 2xxa_A 252 GDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDR-------AQAEKLASKLK 324 (433)
T ss_dssp SSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhh-------hhhHHHHHHHh
Confidence 75332 222222222100 0 011112235555665 66666665443211 00000111111
Q ss_pred HH-HHHHHHHHhhcCC------------CCCceeEEEEEEEEecCC--CeeEEEEEEE----EeeCCcceEEeecCChHH
Q 015083 303 VG-EIIREKIFMQYRN------------EVPYACQVNVVSYKTRPT--AKDFIQVEIV----VEKNSQKIILIGKGGKAL 363 (413)
Q Consensus 303 ~~-eiiReki~~~~~~------------eipys~~v~v~~~~~~~~--~~~~i~~~~~----~~r~~~~~i~iG~~g~~i 363 (413)
-. ++.++.++..+++ .+|+...+. ..+....+ ....+.+.+. .||++++.| +|+.+
T Consensus 325 ~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~-~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~----~~sr~ 399 (433)
T 2xxa_A 325 KGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIP-DNVKSQMDDKVLVRMEAIINSMTMKERAKPEII----KGSRK 399 (433)
T ss_dssp STTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC----CHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhh-hhhhccccHHHHHHHHHHHHcCCHHHhcCcccc----CHHHH
Confidence 11 1223333333333 789876542 22221111 1122333344 688888877 78999
Q ss_pred HHHHHHHHHHHHH
Q 015083 364 KLLATAARLDIED 376 (413)
Q Consensus 364 k~i~~~a~~~l~~ 376 (413)
++|+.-|...++.
T Consensus 400 ~ria~gsg~~~~~ 412 (433)
T 2xxa_A 400 RRIAAGSGMQVQD 412 (433)
T ss_dssp HHHHHHHTCCHHH
T ss_pred HHHHccCCCCHHH
Confidence 9999998655543
No 221
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.60 E-value=1.6e-07 Score=84.45 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=67.5
Q ss_pred HHHHHhhcccccEEEEEeeCCCCC-chHHHHH---HHHccccC--CCCCEEEEEecC-CCCChhhHHHHHHHHH--hcCC
Q 015083 186 MKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDHK--DKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFTD 256 (413)
Q Consensus 186 ~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~l---~~~l~~~~--~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~--~~~~ 256 (413)
...|+.++.++|++|||||+++.. .....++ ..++.... .+.|++|++||. |+...-...++.+.+. ....
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R 195 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH 195 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCC
Confidence 344778899999999999998653 1233444 44444321 578999999995 6764433333333221 1234
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015083 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 257 ~~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
.+.+.+|||++|+|+.+-++||.+.+..
T Consensus 196 ~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 196 PWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp CEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 5689999999999999999999988753
No 222
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.60 E-value=7e-08 Score=93.40 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=75.3
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCC-------C--CCch---HHHHHHHHcccc
Q 015083 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------K--APER---IDEILEEGVGDH 223 (413)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~-------~--~~~~---~~~~l~~~l~~~ 223 (413)
..+..++..+.+|||+| ++.++. .+..++++++++|||+|.+ + .... ...++...+...
T Consensus 160 ~~~~~~~v~l~iwDtgG--Qe~~R~-------~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGG--QRSERR-------KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEEETTEEEEEEEECC--SHHHHT-------TGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEEeeceeeEEEEcCC--chhHHH-------HHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 33456778999999999 444333 3567799999999999765 1 1122 223333333321
Q ss_pred -CCCCCEEEEEecCCCCChh------------------hHHHHHHHH----Hhc----CCCccEEEcccCCCCCHHHHHH
Q 015083 224 -KDKLPILLVLNKKDLIKPG------------------EIAKKLEWY----EKF----TDVDEVIPVSAKYGHGVEDIRD 276 (413)
Q Consensus 224 -~~~~p~ilV~NK~Dl~~~~------------------~~~~~~~~~----~~~----~~~~~v~~iSA~~g~gv~~L~~ 276 (413)
..+.|++|++||+|+...+ ........+ ... .....++.|||+++.||+.++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 1579999999999985322 122222222 111 1123568899999999999999
Q ss_pred HHHhhC
Q 015083 277 WILTKL 282 (413)
Q Consensus 277 ~l~~~l 282 (413)
.+.+.+
T Consensus 311 ~v~~~I 316 (327)
T 3ohm_A 311 AVKDTI 316 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.57 E-value=1.1e-07 Score=91.27 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=62.1
Q ss_pred hhcccccEEEEEeeCCCCC-ch--HHHHHHHHccccCCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCccEEEcc
Q 015083 191 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (413)
Q Consensus 191 ~~~~~aD~vl~VvD~~~~~-~~--~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~iS 264 (413)
.++.++|++|+|+|++++. .. .+.++. .+.. .++|+++|+||+|+.+... .......+... + .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~-~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLV-VYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-G-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-T-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHH-HHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-C-CeEEEEE
Confidence 4689999999999998764 22 234443 3344 6899999999999987642 33334444443 3 3899999
Q ss_pred cCCCCCHHHHHHHHHh
Q 015083 265 AKYGHGVEDIRDWILT 280 (413)
Q Consensus 265 A~~g~gv~~L~~~l~~ 280 (413)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988764
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=2.7e-08 Score=93.60 Aligned_cols=57 Identities=37% Similarity=0.521 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
.+++++|.||||||||+|+|.+.....+++.+++|+.... +.. +..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCccc
Confidence 4899999999999999999999988778888999886532 222 24789999999865
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.49 E-value=2e-07 Score=93.57 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCC----------------CceEEEEE-----------E--EEe
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-----------G--ICS 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~----------------~tt~~~~~-----------~--~~~ 159 (413)
...|+++|.+|+||||++..|. |.++..+...+ +....... . ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4589999999999999999986 55554433111 11000000 0 011
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCC
Q 015083 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
..++.++++||||..+ .... +...+.. ...+. .+|.+++|+|++.+..... ....... .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~-lm~el~~-i~~~~-~pd~vlLVlDa~~gq~a~~--~a~~f~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETK-LLEEMKE-MYDVL-KPDDVILVIDASIGQKAYD--LASRFHQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTH-HHHHHHH-HHHHH-CCSEEEEEEEGGGGGGGHH--HHHHHHH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHH-HHHHHHH-HHHhh-CCcceEEEEeCccchHHHH--HHHHHhc--ccCCcEEEEeccc
Confidence 2357899999999644 2222 2122211 22222 5799999999987533221 2222222 2356889999999
Q ss_pred CCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHH
Q 015083 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (413)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~ 272 (413)
....... ........ + .|+.+++. |++++
T Consensus 250 ~~a~~G~--als~~~~~-g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVAT-G-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHHH-T-CEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHHH-C-CCEEEEEC--CCChH
Confidence 8643221 12222221 2 47777775 66653
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.47 E-value=2.4e-07 Score=91.31 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=61.2
Q ss_pred HHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ccE
Q 015083 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (413)
Q Consensus 187 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v 260 (413)
+....+.+.+|++|+|+|+++........+.+.+ .++|+++|+||+|+.+.. .+...........++ .++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 3344556788899999999874322112222222 478999999999997543 222222222222233 378
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 015083 261 IPVSAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 261 ~~iSA~~g~gv~~L~~~l~~~l 282 (413)
+.+||++|.|+++|++.|.+..
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHhhhhhhc
Confidence 9999999999999999998765
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.43 E-value=5e-07 Score=89.11 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChh----hHHHHHHHHHhcCCC--ccEEE
Q 015083 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (413)
Q Consensus 189 ~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~v~~ 262 (413)
...++..++++++|+|+++........+.+.+ .++|+++|+||+|+.+.. .+......+....++ .++++
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 44446789999999999987644333333333 478999999999997542 222222222222333 47899
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 015083 263 VSAKYGHGVEDIRDWILTKLP 283 (413)
Q Consensus 263 iSA~~g~gv~~L~~~l~~~l~ 283 (413)
+||++|.|+++|++.|.+...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 999999999999999987653
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=2.4e-07 Score=87.10 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCChhhHHHHHHHHHhcCCCccEEEcccCC
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
++...+..+|++|+|+|++.+.......+. ++ ++|.++|+||+|+.+........+.+... + .++ ++||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g-~~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-G-KRV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-T-CCE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-C-CeE-EEECCC
Confidence 455667899999999999987644222111 11 78999999999999865555555555543 2 357 999999
Q ss_pred CCCHHHHHHHHHhh
Q 015083 268 GHGVEDIRDWILTK 281 (413)
Q Consensus 268 g~gv~~L~~~l~~~ 281 (413)
|.|+++|++.|...
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999999887655
No 229
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.33 E-value=9.7e-07 Score=83.16 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=66.6
Q ss_pred HHHHhhcccccEEEEEeeCCCCCc-hHHHHH---HHHcccc--CCCCCEEEEEec-CCCCChhhHHHHHHHHH--hcCCC
Q 015083 187 KNVRSAGINADCIVVLVDACKAPE-RIDEIL---EEGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (413)
Q Consensus 187 ~~~~~~~~~aD~vl~VvD~~~~~~-~~~~~l---~~~l~~~--~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (413)
..++.++.++|++|||||+++... ....++ ..++... ..+.|++|++|| .|+...-...++.+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 347788999999999999987642 122222 2333221 157899999997 58865433333333322 12244
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 015083 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (413)
Q Consensus 258 ~~v~~iSA~~g~gv~~L~~~l~~~l~~ 284 (413)
+.+.+|||++|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 679999999999999999999998863
No 230
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.32 E-value=4.7e-07 Score=91.15 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC---------------ceeeeeCCCCceEEEEEEEEeCC-----------CeeE
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSGP-----------EYQM 165 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~---------------~~~~vs~~~~tt~~~~~~~~~~~-----------~~~~ 165 (413)
+.+...|+|+|.+++|||||+|.|++. +....+ ..++|+....+++.+. +.++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceE
Confidence 446678999999999999999999864 233233 2336666777776553 3679
Q ss_pred EEEeCCCCch
Q 015083 166 ILYDTPGIIE 175 (413)
Q Consensus 166 ~l~DtpG~~~ 175 (413)
+++||||+.+
T Consensus 143 vllDTeG~~~ 152 (447)
T 3q5d_A 143 LLMDTQGTFD 152 (447)
T ss_dssp EEEEEECCCS
T ss_pred EEEcCCcccc
Confidence 9999999864
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=1.1e-06 Score=92.18 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred eeEEEEeCCCCchhhhhh----HHHHHHHHHHhhccc-ccEEEEEeeCCCCCc-hHHHHHHHHccccCCCCCEEEEEecC
Q 015083 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGIN-ADCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKK 236 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~----l~~~~~~~~~~~~~~-aD~vl~VvD~~~~~~-~~~~~l~~~l~~~~~~~p~ilV~NK~ 236 (413)
..+.++|.||+...+... ........+..++.. ..++++++++..... .....+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 468999999976532221 223344445554444 456677776554332 222334444444 578999999999
Q ss_pred CCCCh
Q 015083 237 DLIKP 241 (413)
Q Consensus 237 Dl~~~ 241 (413)
|+...
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 99854
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.29 E-value=2e-06 Score=82.14 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=79.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCce-----------E---EEEEE-------------E--Ee
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R---HRILG-------------I--CS 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt-----------~---~~~~~-------------~--~~ 159 (413)
...++++|.+|+||||++..|. +.++..+...+... + ..+.. + ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4478999999999999999986 44544433222110 0 00000 0 01
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCC-EEEEEecC
Q 015083 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p-~ilV~NK~ 236 (413)
..++.++++||||..+ .... +...+ .... .+..+|.+++|+|+..+. ...... ..+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~-l~~el-~~i~-~~~~~d~vllVvda~~g~-~~~~~~-~~~~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAA-LLEEM-KNIY-EAIKPDEVTLVIDASIGQ-KAYDLA-SKFN---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHH-HHHHH-HHHH-HHHCCSEEEEEEEGGGGG-GHHHHH-HHHH---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHH-HHHHH-HHHH-HHhcCCEEEEEeeCCchH-HHHHHH-HHHH---hhCCCCEEEEeCC
Confidence 1567899999999754 2111 11111 1111 234789999999987542 222212 2222 2356 78899999
Q ss_pred CCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015083 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
|...... ....... ..+ .|+.+++ +|+++++|
T Consensus 250 D~~~~~g--~~~~~~~-~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGG--GALSAVA-ATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHH--HHHHHHH-TTT-CCEEEEE--CSSSTTCE
T ss_pred CCCcchH--HHHHHHH-HHC-cCEEEEe--CCCChhhc
Confidence 9764322 1222222 222 4676665 57777553
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.92 E-value=4.7e-06 Score=79.87 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=59.7
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHcccc-CCCCCEEEEEecCCCCChhh----HHHHHHHHHhcCCCccEEEcccC
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 266 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~v~~iSA~ 266 (413)
.+.++|.+++|+|+..+..... .+.+.+... ..++|.++|+||+|+.+... +......+.... .+++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--YDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT--CCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC--CeEEEEecC
Confidence 5789999999999987664433 333333211 15789999999999987643 444555554433 389999999
Q ss_pred CCCCHHHHHHHH
Q 015083 267 YGHGVEDIRDWI 278 (413)
Q Consensus 267 ~g~gv~~L~~~l 278 (413)
+|.|+++|++.+
T Consensus 160 ~~~g~~~L~~~~ 171 (307)
T 1t9h_A 160 DQDSLADIIPHF 171 (307)
T ss_dssp HHTTCTTTGGGG
T ss_pred CCCCHHHHHhhc
Confidence 999998876654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=0.00012 Score=70.72 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=76.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------ceeeeeCCCCc-e----------EEEEEEEE------------------
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-T----------RHRILGIC------------------ 158 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~------~~~~vs~~~~t-t----------~~~~~~~~------------------ 158 (413)
+.-.++++|++|+|||||++.|.+. ++......... . +..+..+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3448999999999999999998642 22222111100 0 00000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015083 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
...+..+.++||+|..+.....+. .+.. ...++ .+|-.++++|+..+... ...+.. +.. .-...++++||+|-
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~-eL~~-i~ral-~~de~llvLDa~t~~~~-~~~~~~-~~~--~~~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMD-EMKK-IARVT-KPNLVIFVGDALAGNAI-VEQARQ-FNE--AVKIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHH-HHHH-HHHHH-CCSEEEEEEEGGGTTHH-HHHHHH-HHH--HSCCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHH-HHHH-HHHHh-cCCCCEEEEecHHHHHH-HHHHHH-HHH--hcCCCEEEEeCcCC
Confidence 011345788999997543333222 2222 22222 47889999998766322 222222 211 12345889999996
Q ss_pred CChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHHH
Q 015083 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~L 274 (413)
..... ......... + .|+.+++ +|+++++|
T Consensus 281 ~a~~G--~~l~~~~~~-~-~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DARGG--AALSISYVI-D-APILFVG--VGQGYDDL 310 (328)
T ss_dssp CSCCH--HHHHHHHHH-T-CCEEEEE--CSSSTTCE
T ss_pred ccchh--HHHHHHHHH-C-CCEEEEe--CCCCcccc
Confidence 43211 122222222 1 4777776 67776553
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.62 E-value=0.00034 Score=66.84 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=64.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCc-----------eEEEEEEEEe------------------
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGICS------------------ 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~t-----------t~~~~~~~~~------------------ 159 (413)
...|+|+|++|+|||||++.|.+ .++......... .+..+ +.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i-~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI-PVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTC-CEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCc-eEEEeCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999863 222221111000 00000 1111
Q ss_pred -CCCeeEEEEeCCCCchhhhhhH---HHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEec
Q 015083 160 -GPEYQMILYDTPGIIEKKIHML---DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (413)
Q Consensus 160 -~~~~~~~l~DtpG~~~~~~~~l---~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK 235 (413)
..+..+.++||+|..+.....+ .......++.....++.+++++|+..+.... ..+..+.+. ....++++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~-~~~~~~~~~---~~~t~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL-EQAKKFHEA---VGLTGVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH-HHHHHHHHH---HCCSEEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH-HHHHHHHHH---cCCcEEEEEC
Confidence 1123578999999754322222 2111112223345688899999988764322 222222221 1246889999
Q ss_pred CCCC
Q 015083 236 KDLI 239 (413)
Q Consensus 236 ~Dl~ 239 (413)
.|..
T Consensus 257 ~d~~ 260 (304)
T 1rj9_A 257 LDGT 260 (304)
T ss_dssp TTSS
T ss_pred Cccc
Confidence 9875
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.55 E-value=0.00016 Score=68.94 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-------CCceeeeeCCCCc-e-EE-----------EE-E---------EEEeCCCee
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQT-T-RH-----------RI-L---------GICSGPEYQ 164 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~-------~~~~~~vs~~~~t-t-~~-----------~~-~---------~~~~~~~~~ 164 (413)
...++++|.+|+||||++..|. |.++..+...+.. + .. .. . .+....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4489999999999999999874 2233333222210 0 00 00 0 000124568
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcc--cccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015083 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
++++||||........+ ......+. .+|.+++|+|++++... +.+..+....-...-+|+||+|...
T Consensus 185 lvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~----~~~~~~~~~~l~~~giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYED----MKHIVKRFSSVPVNQYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHH----HHHHTTTTSSSCCCEEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHH----HHHHHHHHhcCCCCEEEEeCCCccc
Confidence 99999999754222111 11222222 46788999998865332 2222222211123456789999764
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.53 E-value=0.00021 Score=69.78 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=54.2
Q ss_pred hcccccEEEEEeeCCCCCchHHHHHHHHcccc-CCCCCEEEEEecCCCCChhh---HHHHHHHHHhcCCCccEEEcccCC
Q 015083 192 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (413)
Q Consensus 192 ~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~-~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~v~~iSA~~ 267 (413)
.+.++|.+++| |+..+... ...+.+.+... ..++|.++|+||+|+.+... +......+... + .+++++||.+
T Consensus 127 i~anvD~v~iv-~a~~P~~~-~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-G-~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELS-LNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-G-YRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEE-EESTTTCC-HHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-T-CCEEECBTTT
T ss_pred HHhcCCEEEEE-EeCCCCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-C-CcEEEEecCC
Confidence 36899999977 44444322 22233322110 14688899999999987654 33344444433 3 3799999999
Q ss_pred CCCHHHHHHHH
Q 015083 268 GHGVEDIRDWI 278 (413)
Q Consensus 268 g~gv~~L~~~l 278 (413)
|.|+++|...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999988765
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.52 E-value=0.00086 Score=64.51 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCc--------e------EEEEEEEE-e--------------
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--------T------RHRILGIC-S-------------- 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~t--------t------~~~~~~~~-~-------------- 159 (413)
...|+++|.+|+||||++..|. +.++..+...+.. + +.. ..++ .
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~-l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNK-VDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTT-EEEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCC-ceEEeCCCCCCCHHHHHHHH
Confidence 3479999999999999998874 3333332211110 0 111 1111 0
Q ss_pred -----CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-----ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCE
Q 015083 160 -----GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (413)
Q Consensus 160 -----~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ 229 (413)
..++.++++||||..+.....+.. + ..+...+ ..+|.+++|+|+..+... ....... .. .-...
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~e-L-~~~~~vi~~~~p~~~d~vllVl~a~~~~~~-l~~~~~~-~~--~~~i~ 257 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMAE-L-EKMNKIIQQVEKSAPHEVLLVIDATTGQNG-VIQAEEF-SK--VADVS 257 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHHH-H-HHHHHHHHTTCTTCCSEEEEEEEGGGTHHH-HHHHHHH-TT--TSCCC
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHHH-H-HHHHHHHhcccCCCCceEEEEEECCCcHHH-HHHHHHH-hh--cCCCc
Confidence 135679999999975422122211 1 1111111 348899999998754221 1212221 11 11234
Q ss_pred EEEEecCCCCC
Q 015083 230 LLVLNKKDLIK 240 (413)
Q Consensus 230 ilV~NK~Dl~~ 240 (413)
-+|+||+|...
T Consensus 258 GvVltk~d~~~ 268 (320)
T 1zu4_A 258 GIILTKMDSTS 268 (320)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEeCCCCCC
Confidence 58899999753
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.44 E-value=0.00053 Score=69.53 Aligned_cols=148 Identities=17% Similarity=0.221 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------ceeeeeCCCCce-----------EEEEEEEEe------------------
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-----------RHRILGICS------------------ 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~------~~~~vs~~~~tt-----------~~~~~~~~~------------------ 159 (413)
...++|+|.+|+|||||++.|.+. ++.......... +..+..+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 348999999999999999998642 232221111110 000111100
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHH---HHHhhc-ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEec
Q 015083 160 GPEYQMILYDTPGIIEKKIHMLDSMMMK---NVRSAG-INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~---~~~~~~-~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK 235 (413)
..+..++++||+|..+.....+. .+.+ .++... ...+-++||+|++.+..... .+..+.+. .+ ...+|+||
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~-EL~kiv~iar~l~~~~P~evLLvLDattGq~al~-~ak~f~~~--~~-itgvIlTK 447 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLME-ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEA--VG-LTGITLTK 447 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHH-HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-HHHHHHHH--TC-CSEEEEEC
T ss_pred hcCCCEEEEeCCCccchhhhHHH-HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH-HHHHHHhh--cC-CCEEEEEc
Confidence 13456899999997543332222 2211 111111 23567899999886632221 12211111 12 34678999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCccEEEcccCCCCCHHH
Q 015083 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (413)
Q Consensus 236 ~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gv~~ 273 (413)
+|-...-. .......... .|+.++ -+|.++++
T Consensus 448 LD~takgG--~~lsi~~~~~--~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 448 LDGTAKGG--VIFSVADQFG--IPIRYI--GVGERIED 479 (503)
T ss_dssp GGGCSCCT--HHHHHHHHHC--CCEEEE--ECSSSGGG
T ss_pred CCCccccc--HHHHHHHHHC--CCEEEE--ecCCChhh
Confidence 99643221 1222222221 356553 35666655
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=4.8e-05 Score=72.87 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeeeCCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~-------~tt~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (413)
..++|+|++|||||||+|.|.+.....+.... ++|+.... +... .-.++||||+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 38999999999999999999986543222221 34433211 1111 247899999753
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.31 E-value=0.00028 Score=62.50 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=66.7
Q ss_pred EEEEE-cCCCCCHHHHHHHH------hCCceeeeeCCCCceEEE-------EEEEEe-------------CCCeeEEEEe
Q 015083 117 YVAVL-GKPNVGKSTLANQM------IGQKLSIVTNKPQTTRHR-------ILGICS-------------GPEYQMILYD 169 (413)
Q Consensus 117 ~v~iv-G~~~~GKSsLln~L------~~~~~~~vs~~~~tt~~~-------~~~~~~-------------~~~~~~~l~D 169 (413)
.|+|. +..|+||||+.-.| .|.++..+.-.++.+... ...++. ...+.++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46666 67899999988766 244554443322211000 011111 1346899999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHcccc---CCCCCEEEEEecCCCC
Q 015083 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLI 239 (413)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~---~~~~p~ilV~NK~Dl~ 239 (413)
||+.... ....++..+|.+|+++..+... .....+.+.++.. ..+.++.+|+|++|..
T Consensus 83 ~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 83 GAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp CCSSSSH-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCCCH-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 9985321 1233466799999999987655 5444455555432 1356779999999954
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.24 E-value=0.00072 Score=67.52 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCceeeeeCCCCce--------------EEEEEE--------E-------Ee
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG--------I-------CS 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~------~~~~~~vs~~~~tt--------------~~~~~~--------~-------~~ 159 (413)
...++++|.+|+||||++..|. +.++..+...+... .+.+.. + ..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999884 23333222111100 000000 0 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCC-CEEEEEecCCC
Q 015083 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDL 238 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilV~NK~Dl 238 (413)
..++.++++||||..+.....+. .+. .... ...+|.+++|+|+..+... ....... . ... ..-+|+||+|.
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~-el~-~i~~-~~~pd~vlLVvDa~tgq~a-v~~a~~f-~---~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMG-ELA-RLKE-VLGPDEVLLVLDAMTGQEA-LSVARAF-D---EKVGVTGLVLTKLDG 249 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHH-HHH-HHHH-HHCCSEEEEEEEGGGTTHH-HHHHHHH-H---HHTCCCEEEEESGGG
T ss_pred HCCCCEEEEcCCCcccccHHHHH-HHH-Hhhh-ccCCceEEEEEeccchHHH-HHHHHHH-H---hcCCceEEEEeCcCC
Confidence 14567999999996542111111 111 1111 2368999999998765222 2222211 1 122 35679999997
Q ss_pred CC
Q 015083 239 IK 240 (413)
Q Consensus 239 ~~ 240 (413)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.14 E-value=0.00023 Score=69.49 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCce-eeeeCC---CC----ceEEEEEEEEeCCCeeEEEEeCCCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKL-SIVTNK---PQ----TTRHRILGICSGPEYQMILYDTPGII 174 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~-~~vs~~---~~----tt~~~~~~~~~~~~~~~~l~DtpG~~ 174 (413)
..++|+|++|||||||+|.|++... ...... ++ +|+....+.+..+ ..++||||+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~---~~l~dtpgv~ 279 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHG---GDVIDSPGVR 279 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTS---CEEEECHHHH
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCC---CEecCcccHH
Confidence 3799999999999999999998654 321111 11 3333333333222 2578999853
No 244
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.05 E-value=0.0035 Score=60.06 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-+.++|+|..|+|||||+|.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 458999999999999999999864
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.04 E-value=0.0026 Score=60.72 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCce-----------EEEEEEEE------------------eC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGIC------------------SG 160 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~tt-----------~~~~~~~~------------------~~ 160 (413)
..++++|.+|+||||++..|.+ .++..+....... +.....+. ..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~ 184 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence 4799999999999999998853 2333222111100 00000000 11
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-----ccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEec
Q 015083 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK 235 (413)
.+..++++||||..+. ...+...+ ......+ ..+|.+++|+|+..+.... ......... -...-+|+||
T Consensus 185 ~~~dvvIiDtpg~~~~-~~~l~~eL-~~l~~~i~~~i~~~p~~vllVlda~t~~~~l-~~a~~~~~~---~~i~gvVlTk 258 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHT-KKNLMEEL-RKVHRVVKKKIPDAPHETLLVIDATTGQNGL-VQAKIFKEA---VNVTGIILTK 258 (306)
T ss_dssp TTCSEEEEEECCCCSC-HHHHHHHH-HHHHHHGGGTCTTCCSEEEEEEEGGGHHHHH-HHHHHHHHH---SCCCEEEEEC
T ss_pred cCCCEEEEECCCchhh-HHHHHHHH-HHHHHHHhhccCCCCcEEEEEEECCCCHHHH-HHHHHHHhc---CCCCEEEEeC
Confidence 3456999999996432 22222222 1222222 2488999999987432111 111111111 2234577899
Q ss_pred CCCCC
Q 015083 236 KDLIK 240 (413)
Q Consensus 236 ~Dl~~ 240 (413)
+|...
T Consensus 259 ~D~~~ 263 (306)
T 1vma_A 259 LDGTA 263 (306)
T ss_dssp GGGCS
T ss_pred CCCcc
Confidence 99753
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.02 E-value=0.00065 Score=64.79 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
..++++|++|+|||||+|.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 379999999999999999998 54
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.97 E-value=0.00012 Score=65.47 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=38.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCce-eeeeCCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 015083 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (413)
Q Consensus 112 ~~~~~~v~ivG~~~~GKSsLln~L~~~~~-~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG 172 (413)
.++...|+|+|++|+|||||+++|++... ........|||....+. .++..+.++|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 34555899999999999999999986532 23445556666554332 2344455555544
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0031 Score=60.05 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC------ceeeeeCCCCc--------e---EEEEEEEEe-------------------
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T---RHRILGICS------------------- 159 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~------~~~~vs~~~~t--------t---~~~~~~~~~------------------- 159 (413)
-.++++|++|+|||||++.|.+. ++......... + +..+ +.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i-~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC-EIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC-EEECCC--CCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCc-eEEEecCCccCHHHHHHHHHHHH
Confidence 48999999999999999998642 22221111100 0 0000 1110
Q ss_pred -CCCeeEEEEeCCCCchhhhhh---HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEec
Q 015083 160 -GPEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (413)
Q Consensus 160 -~~~~~~~l~DtpG~~~~~~~~---l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK 235 (413)
..+....++||.|+.+..... +.......++......+-+++|+|++.+...... +..+.+. .+ ..+++++|
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~--~g-~t~iiiTh 255 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VG-ITGLILTK 255 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TC-CCEEEEEC
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHh--cC-CCEEEEeC
Confidence 012346789999985422222 2211111122233467778889997766554432 2222112 23 35778999
Q ss_pred CCCC
Q 015083 236 KDLI 239 (413)
Q Consensus 236 ~Dl~ 239 (413)
.|-.
T Consensus 256 lD~~ 259 (302)
T 3b9q_A 256 LDGS 259 (302)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9865
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.005 Score=60.03 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------ceeeeeCCCCc--------e---EEEEEEEEeC-----------------
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T---RHRILGICSG----------------- 160 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~------~~~~vs~~~~t--------t---~~~~~~~~~~----------------- 160 (413)
.-.++++|++|+|||||+..|.+. ++......... + +..+ ..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i-~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC-EIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC-EEECCSSSSCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCe-EEEEecccccChhhhHHHHHHH
Confidence 348999999999999999998642 22221111100 0 0001 11110
Q ss_pred ---CCeeEEEEeCCCCchhhhhh---HHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEe
Q 015083 161 ---PEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (413)
Q Consensus 161 ---~~~~~~l~DtpG~~~~~~~~---l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~N 234 (413)
.+....++||.|+.+..... +........+......+-+++|+|++.+...... +..+.+. .+ ..+++++
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~--~g-~t~iiiT 311 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VG-ITGLILT 311 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TC-CCEEEEE
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHh--cC-CeEEEEe
Confidence 12346789999985432222 2211111222334567878899997766554332 2222111 22 3578899
Q ss_pred cCCCCC
Q 015083 235 KKDLIK 240 (413)
Q Consensus 235 K~Dl~~ 240 (413)
|.|-..
T Consensus 312 hlD~~~ 317 (359)
T 2og2_A 312 KLDGSA 317 (359)
T ss_dssp SCTTCS
T ss_pred cCcccc
Confidence 998653
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.84 E-value=0.00074 Score=64.32 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCcee
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLS 141 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~ 141 (413)
..++++|++|+|||||+|.|.+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 37999999999999999999986543
No 251
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.77 E-value=0.0017 Score=58.19 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=62.8
Q ss_pred EEEEE-cCCCCCHHHHHHHHh------CCceeeeeCCCCceEEEEE-------EEEe-------CCCeeEEEEeCCCC-c
Q 015083 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRIL-------GICS-------GPEYQMILYDTPGI-I 174 (413)
Q Consensus 117 ~v~iv-G~~~~GKSsLln~L~------~~~~~~vs~~~~tt~~~~~-------~~~~-------~~~~~~~l~DtpG~-~ 174 (413)
.|+++ +..|+||||+.-.|. | ++..+.-.++.+..... .++. ...+.++++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35554 679999999887763 5 55443322221110000 0111 23467999999984 3
Q ss_pred hhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015083 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.. ....++..||.+|+++..+...-.....+.+.++.. .+.++.+|+|++|...
T Consensus 81 ~~-----------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DE-----------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp SS-----------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred cH-----------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 21 123346789999999986543222222333333331 2567899999999754
No 252
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.77 E-value=0.0041 Score=58.92 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHcccc--CCCCCEE-EEEecCCC
Q 015083 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 238 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~--~~~~p~i-lV~NK~Dl 238 (413)
.+.++++|||+..... .+..++..||.+|+|++.....-.....+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4678999998843211 012346789999999976532212222233333322 1345544 89999984
No 253
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.75 E-value=0.0043 Score=58.86 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=60.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC------CceeeeeCCCCce--------------EEEEEE-------------E--Ee
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT--------------RHRILG-------------I--CS 159 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~------~~~~~vs~~~~tt--------------~~~~~~-------------~--~~ 159 (413)
...++++|.+|+||||++..|.+ .++..+...+... ...... + ..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999988743 2332222111100 000000 0 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCC-CEEEEEecCCC
Q 015083 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDL 238 (413)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~-p~ilV~NK~Dl 238 (413)
..++.++++||||..+.....+.. +.. .... -.+|.+++|+|+..+ .......... . ... ..-+|+||+|.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~-l~~-~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~-~---~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGE-LAR-LKEV-LGPDEVLLVLDAMTG-QEALSVARAF-D---EKVGVTGLVLTKLDG 249 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHH-HHH-HHHH-HCCSEEEEEEEGGGT-HHHHHHHHHH-H---HHTCCCEEEEECGGG
T ss_pred hCCCCEEEEeCCCCccccHHHHHH-HHH-Hhhh-cCCCEEEEEEeCCCc-HHHHHHHHHH-h---hcCCCCEEEEECCCC
Confidence 134679999999864322111211 111 1111 258888999998753 2211212111 1 122 35589999997
Q ss_pred CC
Q 015083 239 IK 240 (413)
Q Consensus 239 ~~ 240 (413)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 254
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.45 E-value=0.0051 Score=61.58 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
+...|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44589999999999999999664
No 255
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.27 E-value=0.0004 Score=70.36 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEE----EeCCCeeEEEEeCCCCchhhhhhHHHH---HHH
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI----CSGPEYQMILYDTPGIIEKKIHMLDSM---MMK 187 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~----~~~~~~~~~l~DtpG~~~~~~~~l~~~---~~~ 187 (413)
...|+++|.||+||||+.++|...-.. ... .|....... .........++|+.| +..+...... ...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHH
Confidence 347999999999999999998643211 000 011100000 000112234677777 3222111111 122
Q ss_pred HHHhhcccccEEEEEeeCCCCCchHHHHHHHHccc
Q 015083 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (413)
Q Consensus 188 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~ 222 (413)
....++..++..++|+|+++........+...++.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 33455656778899999988755444445444443
No 256
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.15 E-value=0.0021 Score=58.53 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCC
Q 015083 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~D 237 (413)
..+.++++|||+..... ...++..||.+|++++.+...-.....+.+.++.. ....+.+|+|+++
T Consensus 130 ~~yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 45679999998743211 22336789999999987532222222333333332 2256789999998
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.0026 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...++|+|++|+|||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999864
No 258
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.10 E-value=0.055 Score=48.84 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=41.4
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccC-CCCCEEEEEecCCCCC
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIK 240 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~-~~~p~ilV~NK~Dl~~ 240 (413)
+.++++|||+.... ....++..||.+|+++......-.....+.+.++... ....+.+|+|+++...
T Consensus 119 yD~viiD~p~~~~~-----------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 119 YDYIIVDFGASIDH-----------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp CSEEEEEEESSCCT-----------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred CCEEEEeCCCCCch-----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 46899999984321 1233477899999999865322222233344444422 2456889999999654
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.97 E-value=0.0031 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
+++|+|++|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987653
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.89 E-value=0.0014 Score=57.83 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCce-eeeeCCCCceEEEEE
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRIL 155 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~-~~vs~~~~tt~~~~~ 155 (413)
-|+|+|++|||||||+++|+...- ......+.|||.+-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~ 42 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRA 42 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCC
Confidence 388999999999999999975421 123455666765443
No 261
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.88 E-value=0.21 Score=45.87 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+++|.||+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 262
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.86 E-value=0.054 Score=50.95 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=41.7
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCCCC
Q 015083 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (413)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~~ 240 (413)
.++|+|||+..... .+......||.+|+|+..............+.++.. .....-+|+|++|...
T Consensus 203 D~VIIDtpp~~~~~----------da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~-g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVT----------DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQN-GIPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCT----------HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHT-TCCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchH----------HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhC-CCCEEEEEEcCccccc
Confidence 58999999864311 122235679999999998765544444444445441 2234568999998653
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.77 E-value=0.0038 Score=55.42 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999863
No 264
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.69 E-value=0.079 Score=49.56 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=38.8
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccc----cCCCCC-EEEEEecCC
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD----HKDKLP-ILLVLNKKD 237 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~----~~~~~p-~ilV~NK~D 237 (413)
+.++++|||+..... ...++..||.+|+++.+..........+.+.++. ...+.+ .-+|+|++|
T Consensus 155 yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 155 YDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp CSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred CCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 568999999853211 1222446999999998765432222222222221 123566 448999999
Q ss_pred CCC
Q 015083 238 LIK 240 (413)
Q Consensus 238 l~~ 240 (413)
...
T Consensus 224 ~~~ 226 (298)
T 2oze_A 224 TDS 226 (298)
T ss_dssp TTC
T ss_pred CCc
Confidence 754
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.65 E-value=0.0066 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999885
No 266
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.65 E-value=0.044 Score=49.98 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=40.4
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccC-------CCCCEEEEEe
Q 015083 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 234 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~-------~~~p~ilV~N 234 (413)
.+.++++|||+.... ....++..||.+|+|++.....-.....+.+.++... ....+.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 578999999984321 1233466899999999875332222233344444321 1246789999
Q ss_pred cCCC
Q 015083 235 KKDL 238 (413)
Q Consensus 235 K~Dl 238 (413)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
No 267
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.62 E-value=0.0051 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|++|+|||||++.|.|.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999874
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.58 E-value=0.0058 Score=54.45 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999764
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.58 E-value=0.0061 Score=53.71 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++|+|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 37999999999999999999874
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.54 E-value=0.0066 Score=54.17 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
...|+|+|++|||||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3479999999999999999998654
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.43 E-value=0.0059 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|++|+|||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.42 E-value=0.0061 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|++|+|||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999874
No 273
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.42 E-value=0.0079 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 389999999999999999998854
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.37 E-value=0.0082 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.0075 Score=54.54 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
..++|+|++|+|||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999998753
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.27 E-value=0.0095 Score=51.39 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 799999999999999998654
No 277
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.20 E-value=0.023 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..+.|.|++|+|||+|+..+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.18 E-value=0.01 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999864
No 279
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.01 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999853
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.17 E-value=0.012 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.+|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.12 E-value=0.011 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998854
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.011 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
..|+|+|++|+|||||++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999997653
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.11 E-value=0.011 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998854
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.10 E-value=0.011 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.09 E-value=0.011 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999999853
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.08 E-value=0.011 Score=55.37 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999854
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.07 E-value=0.011 Score=55.02 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 389999999999999999999854
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.06 E-value=0.012 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 289
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.06 E-value=0.01 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999774
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.99 E-value=0.013 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 291
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.99 E-value=0.012 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.96 E-value=0.013 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 389999999999999999999853
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.95 E-value=0.011 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++++|+.|+|||||++.|.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 379999999999999999997743
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.95 E-value=0.013 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999985
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.94 E-value=0.014 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 015083 116 GYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~ 136 (413)
..|+|+|++|+|||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.93 E-value=0.013 Score=54.01 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.93 E-value=0.013 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|+.|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 298
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.92 E-value=0.013 Score=54.22 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999853
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.89 E-value=0.014 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999854
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.85 E-value=0.01 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|+.|+|||||++.|.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999886
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.84 E-value=0.014 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999995
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.83 E-value=0.015 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999854
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.82 E-value=0.014 Score=54.23 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...++|+|++|+|||||++.|.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3448999999999999999999874
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.77 E-value=0.014 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..|+|+|.+|+|||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998653
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.76 E-value=0.015 Score=53.70 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.76 E-value=0.014 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+.++|+|.+|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.75 E-value=0.016 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999998853
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.72 E-value=0.017 Score=48.99 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 015083 117 YVAVLGKPNVGKSTLANQM 135 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L 135 (413)
.|+|+|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.72 E-value=0.015 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|++|||||||++.|..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999965
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.70 E-value=0.013 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.|+|+|.+|+|||||++.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998653
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.68 E-value=0.015 Score=55.32 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.-.++|+|++|+|||||++.|.|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 348999999999999999998753
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.67 E-value=0.015 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999975
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.61 E-value=0.013 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.53 E-value=0.018 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|+|++|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3448999999999999999999764
No 315
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.49 E-value=0.02 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 316
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.49 E-value=0.033 Score=52.18 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCC
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~ 206 (413)
+.++++|||+.... ....++..||.+|+++...
T Consensus 104 yD~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA-----------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH-----------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH-----------HHHHHHHHCCEEEEEEcCC
Confidence 46899999984321 1334467899999999865
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.47 E-value=0.02 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
No 318
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.45 E-value=0.066 Score=50.37 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
-+.+.|+||+|||+|+.++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567779999999999999864
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.42 E-value=0.015 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=15.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-CCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMI-GQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~-~~~ 139 (413)
..++|+|++|+|||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 379999999999999999998 653
No 320
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.36 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4899999999999999999764
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.37 E-value=0.029 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999875
No 322
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.37 E-value=0.014 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 389999999999999999998853
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.34 E-value=0.0096 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.34 E-value=0.019 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|++|+|||||++.|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.34 E-value=0.022 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...|+|+|.+|+|||||++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.33 E-value=0.28 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.+.|+||+|||+|+.++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 327
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.32 E-value=0.022 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 389999999999999999999864
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.27 E-value=0.027 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.26 E-value=0.031 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4458999999999999999998654
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.26 E-value=0.022 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999866
No 331
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.25 E-value=0.032 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999854
No 332
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.21 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999764
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.22 E-value=0.026 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.21 E-value=0.026 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.10 E-value=0.022 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.09 E-value=0.02 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++++|++|+|||||+.++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.03 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 338
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.06 E-value=0.14 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...|+++|.||+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.04 E-value=0.025 Score=55.03 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
....++|+|++|+|||||++.|++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999763
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.04 E-value=0.027 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
-.++|+|++|+|||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3799999999999999999873
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.02 E-value=0.024 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999976
No 342
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.02 E-value=0.027 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.-.++|+|++|+|||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3489999999999999999998854
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.01 E-value=0.031 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+.++|+|.+|+|||||+++|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.99 E-value=0.028 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|+|.+|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999998763
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.99 E-value=0.03 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.||+||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998853
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.96 E-value=0.028 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 379999999999999999998854
No 347
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.95 E-value=0.031 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.+|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 348
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.95 E-value=0.034 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
+...|+|+|.+|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34479999999999999999986
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.93 E-value=0.033 Score=48.24 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+++|.||+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 350
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.92 E-value=0.031 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 351
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.88 E-value=0.03 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998854
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.79 E-value=0.032 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 379999999999999999998854
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.79 E-value=0.042 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|+|.||+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999854
No 354
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.79 E-value=0.18 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.|.|+||+|||+|+.++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999965
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.78 E-value=0.035 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999865
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.78 E-value=0.026 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++|+|++|+|||||++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.76 E-value=0.033 Score=48.10 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 358
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.74 E-value=0.037 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 359
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.034 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 379999999999999999998854
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.69 E-value=0.035 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 361
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.67 E-value=0.036 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.66 E-value=0.035 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 379999999999999999998854
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.66 E-value=0.036 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|+|.+|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998865
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.65 E-value=0.03 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|++|+|||||++.|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 365
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.63 E-value=0.035 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 379999999999999999998854
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.63 E-value=0.037 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|+|++|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998854
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.61 E-value=0.041 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4458999999999999999999764
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.59 E-value=0.036 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 389999999999999999998854
No 369
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.58 E-value=0.21 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...+.|.|+||+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.57 E-value=0.033 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++|+|++|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999885
No 371
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.56 E-value=0.057 Score=44.95 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.|.|.||+|||+++.++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.54 E-value=0.051 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+++|.+|+||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 373
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.54 E-value=0.044 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999853
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.52 E-value=0.04 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...|+|.|..|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4448999999999999999999874
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.50 E-value=0.031 Score=54.32 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.-+++|+|++|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.50 E-value=0.046 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+..+|+|+.|+|||||+++|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999853
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.48 E-value=0.035 Score=54.31 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
....++|+|++|+|||||++.|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999873
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.48 E-value=0.046 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~ 136 (413)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999997
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.44 E-value=0.047 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999654
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.43 E-value=0.047 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 381
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.38 E-value=0.045 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+++|.+|+||||+...|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.29 E-value=0.048 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.||+||||+...|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999854
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.26 E-value=0.045 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|+|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.26 E-value=0.036 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=15.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
+...|+|.|.+|+||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999985
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.24 E-value=0.04 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+...++|+|++|+|||||+++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4458999999999999999999763
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.23 E-value=0.044 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999998853
No 387
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.28 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 5899999999999999999763
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.16 E-value=0.031 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 389999999999999999998854
No 389
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.14 E-value=0.069 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999863
No 390
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.10 E-value=0.18 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~ 136 (413)
.+..+|+|+.|+|||||+++|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999986
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.10 E-value=0.049 Score=48.34 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|+|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 392
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.06 E-value=3.8 Score=38.64 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=45.5
Q ss_pred hcccc--cEEEEEeeCCCCCchHHHHHHHHccccCCCCCE-EEEEecCCCCCh--hh-------HHHHHHHHHhcCCCcc
Q 015083 192 AGINA--DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP--GE-------IAKKLEWYEKFTDVDE 259 (413)
Q Consensus 192 ~~~~a--D~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilV~NK~Dl~~~--~~-------~~~~~~~~~~~~~~~~ 259 (413)
.+.+. +.+++|.-+............+.++. .+.|+ -+|+|++.-... .. .....+.+.+..+..+
T Consensus 216 ~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 293 (324)
T 3zq6_A 216 VMSDPERTSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV 293 (324)
T ss_dssp HHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE
T ss_pred HhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 34443 47888876543222333444555555 56676 678999876421 11 1122233333332223
Q ss_pred --EEEcccCCCCCHHHHHHHHHh
Q 015083 260 --VIPVSAKYGHGVEDIRDWILT 280 (413)
Q Consensus 260 --v~~iSA~~g~gv~~L~~~l~~ 280 (413)
.+|.-+..=.|++.|......
T Consensus 294 ~~~iPl~~~e~~g~~~L~~~~~~ 316 (324)
T 3zq6_A 294 VAEVPLLKKEAKGIETLEKIAEQ 316 (324)
T ss_dssp EEEEECCSSCSCSHHHHHHHHHH
T ss_pred EEEecCCCCCCCCHHHHHHHHHH
Confidence 356666677788877655443
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.00 E-value=0.053 Score=48.67 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 015083 116 GYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~ 136 (413)
..|+|+|.+|+||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 394
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.00 E-value=0.04 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015083 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
++++|+||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.99 E-value=0.058 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+++|.+|+||||+++.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 396
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.18 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+.|.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 397
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.86 E-value=0.061 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|.|+|+||+||||+..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334789999999999999999964
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.84 E-value=0.06 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~ 136 (413)
.+..+|+|+.|+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999974
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.82 E-value=0.03 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999998854
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.79 E-value=0.054 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 401
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.11 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.73 E-value=0.053 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.||+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998843
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.72 E-value=0.051 Score=55.48 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.++|+|++|+|||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
No 404
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.71 E-value=0.18 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
....+.+.|+||+|||+|+.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3447999999999999999998653
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.69 E-value=0.053 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.||+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 406
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.69 E-value=0.047 Score=49.84 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015083 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
++|+|+||+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999763
No 407
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.63 E-value=0.054 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|++|+|||||+..|.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.59 E-value=0.28 Score=44.96 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEEEEEecCCC
Q 015083 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (413)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~ilV~NK~Dl 238 (413)
.+.++++|||+.... ....++..||.+|+++............+.+.++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 457999999984321 123346679999999987643333333444555554346788899999954
No 409
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.59 E-value=0.082 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.58 E-value=0.06 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 411
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.56 E-value=0.067 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 412
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.36 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 5999999999999999999764
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.52 E-value=0.031 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.50 E-value=0.068 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.051 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
+..+++|+|+.|+|||||++.|.|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3458999999999999999999765
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.43 E-value=0.073 Score=47.34 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.41 E-value=0.073 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+|+|.|.||+||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999864
No 418
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.36 E-value=6.4 Score=37.56 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=46.6
Q ss_pred ccEEEEEeeCCCCCchHHHHHHHHccccCCCCCE-EEEEecCCCCCh--hh-------HHHHHHHHHhcCCCcc--EEEc
Q 015083 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP--GE-------IAKKLEWYEKFTDVDE--VIPV 263 (413)
Q Consensus 196 aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~-ilV~NK~Dl~~~--~~-------~~~~~~~~~~~~~~~~--v~~i 263 (413)
.+.+++|.-.............+.++. .+.|+ -+|+|++..... .. .....+.+.+..+..+ .+|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 467788775543222333444555555 57776 678999986521 11 1122233333332222 4677
Q ss_pred ccCCCCCHHHHHHHHHhhC
Q 015083 264 SAKYGHGVEDIRDWILTKL 282 (413)
Q Consensus 264 SA~~g~gv~~L~~~l~~~l 282 (413)
....-.|++.|........
T Consensus 315 ~~~e~~g~~~L~~~~~~l~ 333 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILY 333 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHc
Confidence 7777789888766554444
No 419
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.30 E-value=0.075 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.27 E-value=0.088 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999854
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.21 E-value=0.062 Score=49.32 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+++|.||+||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.21 E-value=0.071 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-.++|+|+||+|||||+..|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 423
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.20 E-value=0.23 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|.+.|+||+|||+|+.++.+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999875
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.19 E-value=0.076 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.13 E-value=0.073 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998854
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.10 E-value=0.71 Score=42.77 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.+.|+||+|||+|+.++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 427
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.04 E-value=0.11 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|.|+|+||+||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334677899999999999998864
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.03 E-value=0.1 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
+...|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999986
No 429
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.02 E-value=0.072 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
+.-+++|+|++|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998853
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.01 E-value=0.086 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.||+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 431
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.14 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 432
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.98 E-value=0.065 Score=49.76 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 015083 118 VAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 118 v~ivG~~~~GKSsLln~L~~~ 138 (413)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999763
No 433
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.92 E-value=0.065 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++++|+||+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999764
No 434
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.91 E-value=0.086 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.182 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..++|+|++|+|||||+..|.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 435
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.89 E-value=0.085 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.89 E-value=0.092 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999998854
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.88 E-value=0.083 Score=44.81 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.81 E-value=0.1 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.+|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.77 E-value=0.094 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 389999999999999999998854
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.74 E-value=0.073 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
-.++|+|++|+|||||++.|.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999865
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.73 E-value=0.11 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.+|+||||+...|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999854
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.65 E-value=0.085 Score=54.67 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998853
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.09 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 389999999999999999998854
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.60 E-value=0.1 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
+...|+|.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999886
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.57 E-value=0.1 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.+|+||||+...|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998843
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.54 E-value=0.099 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 447
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.45 E-value=0.084 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.-.++|+|++|+|||||++.|.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3489999999999999999998854
No 448
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.44 E-value=0.096 Score=47.02 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++|+|++|+|||||+..|.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999999873
No 449
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.42 E-value=0.38 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.+.|+||+|||+|+.++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999865
No 450
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.41 E-value=0.32 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.|.|+||+|||+|+.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.38 E-value=0.12 Score=46.05 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...+.|.|+||+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.37 E-value=0.099 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999998854
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.36 E-value=0.098 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999854
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.34 E-value=0.11 Score=46.28 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|.|+|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.32 E-value=0.094 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 389999999999999999998853
No 456
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.32 E-value=0.67 Score=43.60 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=49.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~~~tt~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (413)
.+.+-|+||+|||+++.++...-. ..+..++..... ...+...+.......-...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~----------------------~~~~~i~~~~~~---~~~i~~~~~~~~~~~~~~~ 104 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVN----------------------ADMMFVNGSDCK---IDFVRGPLTNFASAASFDG 104 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTT----------------------EEEEEEETTTCC---HHHHHTHHHHHHHBCCCSS
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC----------------------CCEEEEcccccC---HHHHHHHHHHHHhhcccCC
Confidence 455556799999999999854321 123333433211 1222222211111111122
Q ss_pred cEEEEEeeCCCCCc--hHHHHHHHHccccCCCCCEEEEEecCCCC
Q 015083 197 DCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (413)
Q Consensus 197 D~vl~VvD~~~~~~--~~~~~l~~~l~~~~~~~p~ilV~NK~Dl~ 239 (413)
...++++|-.+... .....+...+.....+.++|+..|..+..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 56677777655543 23344444444433457788888877643
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.28 E-value=0.15 Score=45.35 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCceeeee
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT 144 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~~~~vs 144 (413)
..|+|+|++|+|||+|...|...-..+++
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~iIs 63 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHRLIA 63 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCeEEe
Confidence 36999999999999999999765544333
No 458
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.26 E-value=0.092 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
...+.|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988643
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.26 E-value=0.13 Score=46.52 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+...|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999998864
No 460
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.23 E-value=0.13 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999865
No 461
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.17 E-value=0.11 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..++|+|++|+|||||++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999975
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.16 E-value=0.11 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|+.|+|||||++.|.|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.05 E-value=0.1 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 113 ~~~~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345589999999999999999998853
No 464
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.03 E-value=0.091 Score=54.54 Aligned_cols=24 Identities=46% Similarity=0.502 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999998853
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.01 E-value=0.09 Score=54.45 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|++|+|||||++.|.|-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 389999999999999999998854
No 466
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.00 E-value=0.59 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.|.|+||+|||+|+.++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 467
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.86 E-value=0.14 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.|.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 468
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.85 E-value=0.67 Score=42.33 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCC
Q 015083 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDL 238 (413)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl 238 (413)
..+.++++|||+..... .+ ....+..+|.+|+|+..............+.++. .+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~--~~-------~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDA--PL-------TVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEE--TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSH--HH-------HHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHT--TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchH--HH-------HHHhhccCCeEEEEecCccchHHHHHHHHHHHHh--CCCCEEEEEECCCcc
Confidence 45679999999843211 01 0111236899999998765443333334444555 467777 99999874
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.84 E-value=0.12 Score=53.05 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999864
No 470
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.81 E-value=0.27 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.|.|+||+|||+|+.++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.76 E-value=0.14 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 015083 115 SGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~ 136 (413)
.+..+|+|+.|+|||||+++|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999973
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.72 E-value=0.17 Score=43.99 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNK 146 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~~ 146 (413)
-|+|.|++|+|||||.-.|.......+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~~lvaDD 47 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGHQLVCDD 47 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTCEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCeEecCC
Confidence 589999999999999999977655544443
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.62 E-value=0.37 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.+.|+||+|||+|+.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999875
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.56 E-value=0.15 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 475
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.54 E-value=0.12 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.|.+.|+||+|||+|+.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 476
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.49 E-value=0.15 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.44 E-value=0.14 Score=53.45 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCc
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-.++|+|+.|+|||||++.|.|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999864
No 478
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.37 E-value=0.37 Score=44.70 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccccEEEEEeeCCCCCchHHHHHHHHccccCCCCCEE-EEEecCCCC
Q 015083 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLI 239 (413)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~l~~~l~~~~~~~p~i-lV~NK~Dl~ 239 (413)
+.++|+|||+..... . +......||.+|+|+..............+.++. .+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d---------~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-D---------AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEA--TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-H---------HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHT--TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-H---------HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHh--CCCCEEEEEEeCCcCC
Confidence 358999999854311 1 1112457899999999876554444445555555 456665 899999864
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.12 E-value=0.15 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
-.++|+|++|+|||||+..|.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.00 E-value=0.17 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
.+.|+|+|++|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999999643
No 481
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.99 E-value=0.38 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~~ 138 (413)
..++++|+||+|||+|+..|...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 482
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.98 E-value=0.35 Score=43.65 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=17.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHH
Q 015083 114 KSGYVAVLGKPNVGKSTLANQM 135 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L 135 (413)
+...+.+.|.+|+||||++-.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHH
Confidence 3447888899999999977655
No 483
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.16 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCce
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~ 140 (413)
.++|+|+.|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999998653
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.85 E-value=0.19 Score=47.86 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeeeC
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN 145 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~~~~vs~ 145 (413)
-|+|+|.+|+||||++..|+......+++
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 59999999999999999998766554544
No 485
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.70 E-value=0.17 Score=47.18 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.|.|+|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 486
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.67 E-value=1.2 Score=44.29 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.+.|+||+|||+|+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 487
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.64 E-value=0.18 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
..+..+|+|+.|+|||||+++++
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999973
No 488
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.51 E-value=0.2 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+.|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.50 E-value=0.13 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=17.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
+...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 490
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.22 E-value=0.41 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
-|.+.|+||+|||+|+.++.+.-
T Consensus 240 GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999997643
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.20 E-value=0.26 Score=46.06 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 015083 115 SGYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 115 ~~~v~ivG~~~~GKSsLln~L~~ 137 (413)
...+.|.|+||+|||+|+.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987654
No 492
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.03 E-value=0.15 Score=48.64 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
.+.+.|++|+|||||++.|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998866
No 493
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.96 E-value=0.63 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|.|.|+||+|||+|+.++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 494
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.96 E-value=0.14 Score=58.22 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 015083 117 YVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~ 137 (413)
+|+|||++|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 495
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.93 E-value=0.28 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..+.++|+||+|||+|+..|..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998865
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.89 E-value=0.24 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|.|.+|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 497
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.85 E-value=0.21 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 015083 114 KSGYVAVLGKPNVGKSTLANQMI 136 (413)
Q Consensus 114 ~~~~v~ivG~~~~GKSsLln~L~ 136 (413)
..+..+|+|+.|+|||||+++|.
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHH
T ss_pred CCCcEEEECCCCCcHHHHHHHHH
Confidence 34489999999999999999986
No 498
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.79 E-value=0.033 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 015083 117 YVAVLGKPNVGKSTLANQMIGQK 139 (413)
Q Consensus 117 ~v~ivG~~~~GKSsLln~L~~~~ 139 (413)
.++|+|++|+|||||+++|.+.-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999997743
No 499
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.72 E-value=0.25 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..++|+|+||+|||||+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999887754
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.67 E-value=0.22 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 015083 116 GYVAVLGKPNVGKSTLANQMIG 137 (413)
Q Consensus 116 ~~v~ivG~~~~GKSsLln~L~~ 137 (413)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
Done!