BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015084
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MZK|A Chain A, Nmr Structure Of Kinase-Interacting Fha Domain Of Kinase
Associated Protein Phosphatase, Kapp In Arabidopsis
Length = 139
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 109/134 (81%)
Query: 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKL 235
S L LEV++GP+ G++ +V S ++S+LP+ LGRVSPSD+ LKDSEVSGKHA I WN K
Sbjct: 6 SWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKF 65
Query: 236 KWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSETVS 295
KWELVDMGSLNGTL+NS I+HPD GSR WG P+EL S DIITLGTT+ ++V+I+S+
Sbjct: 66 KWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNEF 125
Query: 296 QIPFGVGVASDPMA 309
QIPF +GVASDPMA
Sbjct: 126 QIPFKIGVASDPMA 139
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWEL 239
L V GP+ G R + T GR SD+ L D VS +HA + N+ ++E+
Sbjct: 49 LVVKRGPNAGARFLLDQPTT-----TAGRHPESDIFLDDVTVSRRHA--EFRINEGEFEV 101
Query: 240 VDMGSLNGTLLNSQPIN 256
VD+GSLNGT +N +P N
Sbjct: 102 VDVGSLNGTYVNREPRN 118
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWEL 239
L V GP+ G R + T GR SD+ L D VS +HA + N+ ++E+
Sbjct: 49 LVVKRGPNAGARFLLDQPTT-----TAGRHPESDIFLDDVTVSRRHA--EFRINEGEFEV 101
Query: 240 VDMGSLNGTLLNSQPIN 256
VD+GSLNGT +N +P N
Sbjct: 102 VDVGSLNGTYVNREPRN 118
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 178 LSLEVVS-GPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLK 236
L+L VV GP+ G R + A S GR SD+ L D VS +HA N+
Sbjct: 32 LALLVVKRGPNAGSRFLLDQAITS-----AGRHPDSDIFLDDVTVSRRHAEFRLENNE-- 84
Query: 237 WELVDMGSLNGTLLNSQPIN 256
+ +VD+GSLNGT +N +P++
Sbjct: 85 FNVVDVGSLNGTYVNREPVD 104
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 177 CLSLEVVSGPSRGIRCSVQSANASRLPLTLGR-VSPSDVLLKDSEVSGKHALINWNPNKL 235
L L V GP G + + R+ GR V +++ +KD+ +S KH I +
Sbjct: 12 SLRLVFVKGPREGDALDYKPGSTIRV----GRIVRGNEIAIKDAGISTKHLRIESDSGN- 66
Query: 236 KWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITS 291
W + D+GS NGTLLNS ++ S + L GD+I LG +SI V S
Sbjct: 67 -WVIQDLGSSNGTLLNSNALDPETS--------VNLGDGDVIKLGEYTSILVNFVS 113
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWEL 239
L V GP+ G R + A S GR SD+ L D VS +HA N+ + +
Sbjct: 58 LVVKRGPNAGSRFLLDQAITS-----AGRHPDSDIFLDDVTVSRRHAEFRLENNE--FNV 110
Query: 240 VDMGSLNGTLLNSQPIN 256
VD+GSLNGT +N +P++
Sbjct: 111 VDVGSLNGTYVNREPVD 127
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWEL 239
L V GP+ G R + S GR SD+ L D VS +HA + +++
Sbjct: 14 LVVKRGPNAGSRFLLDQPTTS-----AGRHPDSDIFLDDVTVSRRHAEFRLEGGE--FQV 66
Query: 240 VDMGSLNGTLLNSQPIN 256
VD+GSLNGT +N +P++
Sbjct: 67 VDVGSLNGTYVNREPVD 83
>pdb|3OUN|A Chain A, Crystal Structure Of The Fhaa Fha Domain Complexed With
The Intracellular Domain Of Rv3910
Length = 157
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 206 LGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHW 265
+GR + L D+ VS +H I W+ L D+ S NGT +N+ P+ + W
Sbjct: 89 IGRGQDAQFRLPDTGVSRRHLEIRWDGQVAL--LADLNSTNGTTVNNAPV-------QEW 139
Query: 266 GKPMELTSGDIITLGTTSSI 285
+L GD+I LG + I
Sbjct: 140 ----QLADGDVIRLGHSEII 155
>pdb|2JQJ|A Chain A, Nmr Structure Of Yeast Dun1 Fha Domain
pdb|2JQL|A Chain A, Nmr Structure Of The Yeast Dun1 Fha Domain In Complex With
A Doubly Phosphorylated (Pt) Peptide Derived From Rad53
Scd1
Length = 151
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 199 ASRLPLTLGRVSPSDVLLKDSEVSGKHA---LINWNPNKLKWELVDM--GSLNGTLLNSQ 253
+R T+GR DV+L + ++S HA L+ + + + L+++ S NGT +N
Sbjct: 35 TNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFIN-- 92
Query: 254 PINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSETVSQI 297
G+R K L +GD I G + S + S + + I
Sbjct: 93 -------GNRLVKKDYILKNGDRIVFGKSCSFLFKYASSSSTDI 129
>pdb|2LC1|A Chain A, Rv0020c_fha Structure
Length = 100
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 206 LGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHW 265
+GR + L D+ VS +H I W+ L D+ S NGT +N+ P+
Sbjct: 30 IGRGQDAQFRLPDTGVSRRHLEIRWDGQVAL--LADLNSTNGTTVNNAPV---------- 77
Query: 266 GKPMELTSGDIITLGTTSSI 285
+ +L GD+I LG + I
Sbjct: 78 -QEWQLADGDVIRLGHSEII 96
>pdb|3PO8|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
pdb|3POA|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
Length = 100
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 206 LGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHW 265
+GR + L D+ VS +H I W+ L D+ S NGT +N+ P+ + W
Sbjct: 27 IGRGQDAQFRLPDTGVSRRHLEIRWDGQVAL--LADLNSTNGTTVNNAPV-------QEW 77
Query: 266 GKPMELTSGDIITLGTTSSI 285
+L GD+I LG + I
Sbjct: 78 ----QLADGDVIRLGHSEII 93
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 212 SDVLLKDSEVSGKHA-LINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPME 270
+D++L D +S +HA +I N N + E D+GS NG ++ + I H +
Sbjct: 36 ADIVLSDMSISRQHAKIIIGNDNSVLIE--DLGSKNGVIVEGRKIEHQST---------- 83
Query: 271 LTSGDIITLGTT 282
L++ ++ LGTT
Sbjct: 84 LSANQVVALGTT 95
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 206 LGRVSPSDVLLKDSEVSGKHALIN---------WNPNKLKWELVDMGSLNGTLLNSQPI 255
GR+S DV L+ VS HA++ + N + L D+GS +GT LN I
Sbjct: 45 FGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRI 103
>pdb|3JSO|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
pdb|3JSO|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
pdb|3JSP|A Chain A, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
pdb|3JSP|B Chain B, Classic Protein With A New Twist: Crystal Structure Of A
Lexa Repressor Dna Complex
pdb|3K3R|E Chain E, Unrefined Crystal Structure Of A Lexa-Dna Complex
pdb|3K3R|F Chain F, Unrefined Crystal Structure Of A Lexa-Dna Complex
Length = 202
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKH----ALINWNPNKL 235
+E+VSG SRGIR + LPL +GRV+ + LL + G + +L N + L
Sbjct: 56 IEIVSGASRGIRLLQEEEEG--LPL-VGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFL 112
Query: 236 ----KWELVDMGSLNGTLL 250
+ D+G ++G LL
Sbjct: 113 LRVSGMSMKDIGIMDGDLL 131
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 212 SDVLLKDSEVSGKHALINWNPNK--LKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269
+D+ + + S +H +I + + LK ++D+ S NGT LN+ I G+R+ +
Sbjct: 81 ADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI----PGARY----I 132
Query: 270 ELTSGDIITL 279
EL SGD++TL
Sbjct: 133 ELRSGDVLTL 142
>pdb|1JHF|A Chain A, Lexa G85d Mutant
pdb|1JHF|B Chain B, Lexa G85d Mutant
Length = 202
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKH----ALINWNPNKL 235
+E+VSG SRGIR + LPL +GRV+ + LL + G + +L N + L
Sbjct: 56 IEIVSGASRGIRLLQEEEEG--LPL-VGRVAADEPLLAQQHIEGHYQVDPSLFKPNADFL 112
Query: 236 ----KWELVDMGSLNGTLL 250
+ D+G ++G LL
Sbjct: 113 LRVSGMSMKDIGIMDGDLL 131
>pdb|1JHH|A Chain A, Lexa S119a Mutant
pdb|1JHH|B Chain B, Lexa S119a Mutant
Length = 202
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 180 LEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKH----ALINWNPNKL 235
+E+VSG SRGIR + LPL +GRV+ + LL + G + +L N + L
Sbjct: 56 IEIVSGASRGIRLLQEEEEG--LPL-VGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFL 112
Query: 236 ----KWELVDMGSLNGTLL 250
+ D+G ++G LL
Sbjct: 113 LRVSGMAMKDIGIMDGDLL 131
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 212 SDVLLKDSEVSGKHALINWNPNK--LKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269
+D+ + + S +H +I + + LK ++D+ S NGT LN+ I G+R+ +
Sbjct: 128 ADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI----PGARY----I 179
Query: 270 ELTSGDIITL 279
EL SGD++TL
Sbjct: 180 ELRSGDVLTL 189
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 212 SDVLLKDSEVSGKHALINWNPNK--LKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269
+D+ + + S +H +I + + LK ++D+ S NGT LN+ I G+R+ +
Sbjct: 104 ADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI----PGARY----I 155
Query: 270 ELTSGDIITL 279
EL SGD++TL
Sbjct: 156 ELRSGDVLTL 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,231,665
Number of Sequences: 62578
Number of extensions: 448358
Number of successful extensions: 1172
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 22
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)