Query 015084
Match_columns 413
No_of_seqs 393 out of 2545
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.7 6E-17 1.3E-21 125.6 8.6 68 204-280 1-68 (68)
2 KOG0697 Protein phosphatase 1B 99.7 7E-17 1.5E-21 155.6 7.1 106 300-410 21-135 (379)
3 KOG0698 Serine/threonine prote 99.5 1.7E-14 3.7E-19 145.1 10.0 94 312-411 47-151 (330)
4 PLN03145 Protein phosphatase 2 99.5 4.3E-14 9.3E-19 144.1 10.9 90 313-411 73-177 (365)
5 cd00060 FHA Forkhead associate 99.5 4.2E-13 9.2E-18 110.2 13.1 91 178-281 2-93 (102)
6 PF00481 PP2C: Protein phospha 99.4 8.4E-14 1.8E-18 134.3 5.7 93 313-412 8-111 (254)
7 TIGR03354 VI_FHA type VI secre 99.4 8.4E-13 1.8E-17 136.0 12.3 94 179-288 2-103 (396)
8 KOG0699 Serine/threonine prote 99.4 1.8E-13 3.9E-18 136.1 6.0 84 301-398 22-105 (542)
9 PLN02927 antheraxanthin epoxid 99.4 8.3E-13 1.8E-17 143.5 10.8 101 175-285 531-640 (668)
10 PTZ00224 protein phosphatase 2 99.3 5.8E-12 1.3E-16 129.1 9.6 84 313-411 30-115 (381)
11 COG1716 FOG: FHA domain [Signa 99.3 1.5E-11 3.3E-16 113.1 10.6 70 203-284 90-159 (191)
12 KOG1881 Anion exchanger adapto 99.3 1E-11 2.2E-16 132.4 10.6 117 163-291 142-267 (793)
13 smart00240 FHA Forkhead associ 99.2 2.7E-11 5.8E-16 88.6 5.9 50 205-255 2-52 (52)
14 KOG0700 Protein phosphatase 2C 99.1 3.7E-10 8.1E-15 114.4 8.6 80 332-411 96-212 (390)
15 COG3456 Predicted component of 99.1 4.2E-10 9.2E-15 114.5 8.7 95 178-288 3-104 (430)
16 KOG1882 Transcriptional regula 98.9 9.2E-10 2E-14 104.6 4.7 111 166-288 162-284 (293)
17 COG0631 PTC1 Serine/threonine 98.9 7.1E-09 1.5E-13 101.4 9.5 83 312-398 16-98 (262)
18 KOG1323 Serine/threonine phosp 98.8 8E-09 1.7E-13 102.5 8.4 80 332-411 141-257 (493)
19 cd00143 PP2Cc Serine/threonine 98.8 4.1E-08 8.9E-13 92.7 10.4 93 313-410 9-109 (254)
20 smart00332 PP2Cc Serine/threon 98.7 1.7E-07 3.6E-12 89.0 10.8 92 312-410 13-112 (255)
21 KOG1880 Nuclear inhibitor of p 98.6 4.7E-08 1E-12 95.7 4.1 110 166-288 6-117 (337)
22 PRK14559 putative protein seri 98.5 2.1E-07 4.6E-12 101.3 9.1 90 312-410 383-494 (645)
23 TIGR02500 type_III_yscD type I 98.2 5.4E-06 1.2E-10 86.1 9.8 94 178-288 1-95 (410)
24 KOG0615 Serine/threonine prote 97.8 3.3E-05 7.1E-10 79.4 5.8 78 203-289 65-155 (475)
25 KOG2293 Daxx-interacting prote 96.8 0.0033 7.2E-08 66.3 7.7 95 177-288 430-531 (547)
26 KOG0245 Kinesin-like protein [ 96.5 0.0077 1.7E-07 67.9 8.5 92 176-283 453-550 (1221)
27 smart00331 PP2C_SIG Sigma fact 96.2 0.029 6.2E-07 51.3 9.0 62 335-409 30-94 (193)
28 PF13672 PP2C_2: Protein phosp 96.1 0.014 3.1E-07 54.1 6.9 49 314-366 7-55 (212)
29 TIGR01663 PNK-3'Pase polynucle 94.9 0.065 1.4E-06 57.7 7.2 91 178-286 15-105 (526)
30 KOG1892 Actin filament-binding 94.5 0.16 3.5E-06 57.3 9.1 95 178-289 357-456 (1629)
31 KOG1379 Serine/threonine prote 89.8 1.3 2.8E-05 44.7 7.9 82 319-410 91-177 (330)
32 PRK15367 type III secretion sy 88.8 2 4.4E-05 44.6 8.7 91 176-288 3-93 (395)
33 PF15102 TMEM154: TMEM154 prot 85.1 0.92 2E-05 40.9 3.3 26 13-38 68-93 (146)
34 KOG0241 Kinesin-like protein [ 83.4 3.6 7.9E-05 47.0 7.7 72 204-287 469-540 (1714)
35 PF12273 RCR: Chitin synthesis 73.0 1.7 3.6E-05 38.1 1.1 18 10-27 4-21 (130)
36 KOG1094 Discoidin domain recep 72.0 6.1 0.00013 43.4 5.1 23 13-35 398-420 (807)
37 PF15176 LRR19-TM: Leucine-ric 68.3 3.3 7.3E-05 35.0 1.8 31 9-39 22-52 (102)
38 KOG0618 Serine/threonine phosp 63.6 16 0.00036 42.1 6.5 67 335-410 551-619 (1081)
39 PF06679 DUF1180: Protein of u 61.5 8.2 0.00018 35.6 3.2 49 8-57 95-149 (163)
40 PF13275 S4_2: S4 domain; PDB: 59.4 7.4 0.00016 30.4 2.1 32 246-286 33-64 (65)
41 PF12273 RCR: Chitin synthesis 58.5 9.3 0.0002 33.4 2.9 31 6-36 3-33 (130)
42 COG5025 Transcription factor o 58.3 8.2 0.00018 42.5 3.0 67 218-290 124-190 (610)
43 cd01324 cbb3_Oxidase_CcoQ Cyto 56.6 16 0.00034 26.8 3.4 23 9-31 13-35 (48)
44 PRK11507 ribosome-associated p 55.2 20 0.00044 28.5 4.0 32 246-286 37-68 (70)
45 PF07423 DUF1510: Protein of u 55.0 11 0.00025 36.2 3.1 21 9-29 17-37 (217)
46 COG2501 S4-like RNA binding pr 53.8 23 0.0005 28.4 4.1 35 245-288 36-70 (73)
47 PF11027 DUF2615: Protein of u 53.2 13 0.00029 31.7 2.8 25 8-32 53-77 (103)
48 TIGR02988 YaaA_near_RecF S4 do 47.8 21 0.00045 26.7 2.9 26 245-279 33-58 (59)
49 PF08114 PMP1_2: ATPase proteo 45.5 9.9 0.00021 27.1 0.8 25 7-31 10-34 (43)
50 PF12911 OppC_N: N-terminal TM 45.3 23 0.0005 25.9 2.8 22 5-26 14-35 (56)
51 PF13253 DUF4044: Protein of u 44.4 31 0.00067 23.8 3.0 22 4-25 9-30 (35)
52 PF02439 Adeno_E3_CR2: Adenovi 42.5 34 0.00073 24.0 3.0 26 6-31 7-32 (38)
53 PF01479 S4: S4 domain; Inter 41.8 22 0.00048 25.1 2.2 24 245-277 25-48 (48)
54 COG4736 CcoQ Cbb3-type cytochr 41.7 36 0.00077 26.3 3.4 27 7-33 10-36 (60)
55 PF05545 FixQ: Cbb3-type cytoc 40.1 39 0.00084 24.5 3.3 23 9-31 12-34 (49)
56 PRK06531 yajC preprotein trans 39.8 23 0.00051 30.7 2.4 19 13-31 6-24 (113)
57 smart00363 S4 S4 RNA-binding d 39.4 43 0.00094 23.3 3.5 28 245-281 25-52 (60)
58 PF14575 EphA2_TM: Ephrin type 38.7 36 0.00078 27.2 3.1 20 10-29 6-25 (75)
59 TIGR00847 ccoS cytochrome oxid 35.3 43 0.00092 25.0 2.8 9 44-52 30-38 (51)
60 PF07228 SpoIIE: Stage II spor 32.8 3E+02 0.0065 24.4 8.7 67 336-411 5-71 (193)
61 PHA00007 E cell lysis protein 32.0 60 0.0013 26.5 3.3 22 5-26 7-28 (91)
62 PRK01777 hypothetical protein; 31.7 45 0.00097 27.9 2.8 28 241-279 46-73 (95)
63 PF07172 GRP: Glycine rich pro 31.6 46 0.00099 27.9 2.8 13 11-23 7-19 (95)
64 PF14316 DUF4381: Domain of un 31.5 31 0.00067 30.7 1.9 23 10-32 25-47 (146)
65 PF05393 Hum_adeno_E3A: Human 30.4 74 0.0016 26.5 3.7 28 9-36 37-64 (94)
66 cd00165 S4 S4/Hsp/ tRNA synthe 29.5 66 0.0014 23.1 3.1 28 245-281 25-52 (70)
67 cd01764 Urm1 Urm1-like ubuitin 27.7 56 0.0012 27.1 2.7 26 248-279 62-87 (94)
68 cd00565 ThiS ThiaminS ubiquiti 27.3 60 0.0013 24.6 2.6 26 248-279 33-58 (65)
69 PF15102 TMEM154: TMEM154 prot 26.6 42 0.00091 30.4 1.8 27 10-36 62-88 (146)
70 PRK14748 kdpF potassium-transp 26.0 1.1E+02 0.0023 20.2 3.1 19 6-24 5-23 (29)
71 PF14851 FAM176: FAM176 family 25.8 2.1E+02 0.0046 26.1 6.2 25 10-34 30-54 (153)
72 PF05454 DAG1: Dystroglycan (D 25.0 24 0.00052 35.5 0.0 22 12-33 154-175 (290)
73 PF01102 Glycophorin_A: Glycop 24.7 57 0.0012 28.7 2.3 17 17-33 78-94 (122)
74 TIGR01683 thiS thiamine biosyn 24.4 75 0.0016 24.0 2.7 25 249-279 33-57 (64)
75 PF15234 LAT: Linker for activ 23.3 85 0.0018 29.6 3.2 28 9-36 9-36 (230)
76 PRK08476 F0F1 ATP synthase sub 23.2 82 0.0018 27.9 3.1 13 19-31 21-33 (141)
77 PF15240 Pro-rich: Proline-ric 22.9 45 0.00097 31.2 1.3 13 12-24 1-13 (179)
78 PRK06488 sulfur carrier protei 22.7 64 0.0014 24.4 2.0 25 249-279 34-58 (65)
79 PRK06944 sulfur carrier protei 22.3 89 0.0019 23.4 2.7 25 249-279 34-58 (65)
80 KOG1110 Putative steroid membr 22.3 1.1E+02 0.0024 28.7 3.8 41 10-50 9-49 (183)
81 TIGR01165 cbiN cobalt transpor 22.2 1E+02 0.0022 25.8 3.1 16 1-16 1-16 (91)
82 PRK05886 yajC preprotein trans 22.0 85 0.0018 27.1 2.8 12 20-31 15-26 (109)
83 PRK07440 hypothetical protein; 21.5 77 0.0017 24.7 2.2 24 250-279 40-63 (70)
84 PRK14750 kdpF potassium-transp 21.4 1.5E+02 0.0033 19.5 3.1 7 20-26 16-22 (29)
85 TIGR02865 spore_II_E stage II 21.3 6.8E+02 0.015 28.6 10.5 48 313-364 562-609 (764)
86 COG5530 Predicted integral mem 21.0 55 0.0012 31.1 1.5 21 13-33 87-107 (247)
87 PF12751 Vac7: Vacuolar segreg 20.7 84 0.0018 32.9 2.9 26 33-58 323-348 (387)
88 PF09604 Potass_KdpF: F subuni 20.5 1.6E+02 0.0035 18.7 3.1 18 15-32 8-25 (25)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.70 E-value=6e-17 Score=125.59 Aligned_cols=68 Identities=38% Similarity=0.728 Sum_probs=62.5
Q ss_pred EEeCCCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEc
Q 015084 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (413)
Q Consensus 204 ~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG 280 (413)
++|||++.||++++++.||+.||.|.++.+ +.|+|+|++|+|||||||+++.+ ++++.|++||+|+||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~--------~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP--------GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS--------TSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC--------CCEEECCCCCEEEcC
Confidence 589999999999999999999999999997 57999999999999999999997 678999999999998
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.67 E-value=7e-17 Score=155.58 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=85.8
Q ss_pred ccccccCchhhhcCCcccCCCceeeeecCCC-CCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcc
Q 015084 300 GVGVASDPMALRRGAKKLPMEDVCYYHWPLP-GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQC 378 (413)
Q Consensus 300 ~v~~~~d~~~~~Rggrr~tMEDah~~~~~l~-~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~ 378 (413)
|+.+....|+.|| ..|||+|+....++ ...+|+||||||||.|+.+|+||++||.++|.....+....+ ..+-+
T Consensus 21 glryg~SSMQGWR----~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k-~gsv~ 95 (379)
T KOG0697|consen 21 GLRYGVSSMQGWR----VEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTK-NGSVE 95 (379)
T ss_pred ceeeeeccccchh----hhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhcc-CCcHH
Confidence 4566667887777 99999999888765 356899999999999999999999999999987555421111 12345
Q ss_pred cHHHHHHHHHHHHHHHhccC--------CCCceeEEEEEe
Q 015084 379 DASDVLRDAFFQTEASMNHH--------YEVLFHTRFLLF 410 (413)
Q Consensus 379 ~i~~aL~~AF~~~D~~l~~~--------~sG~TA~vvlI~ 410 (413)
++++.|+.+|+++|+.|+.- .+||||++++|.
T Consensus 96 ~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vs 135 (379)
T KOG0697|consen 96 NVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVS 135 (379)
T ss_pred HHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEec
Confidence 89999999999999999875 479999999974
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.54 E-value=1.7e-14 Score=145.12 Aligned_cols=94 Identities=28% Similarity=0.293 Sum_probs=76.8
Q ss_pred cCCcccCCCceeeeecCCC-----CCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHH
Q 015084 312 RGAKKLPMEDVCYYHWPLP-----GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRD 386 (413)
Q Consensus 312 Rggrr~tMEDah~~~~~l~-----~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~ 386 (413)
.+|+|..|||.|.+...+. +....+||||||||||..||+||++|||+.|.+.+.... ....+++++++
T Consensus 47 ~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~------~~~~~~~a~~~ 120 (330)
T KOG0698|consen 47 IRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPK------DRQDVKDALRR 120 (330)
T ss_pred cCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhccc------chHHHHHHHHH
Confidence 3566778999999988753 222589999999999999999999999999998776510 01358999999
Q ss_pred HHH-HHHHHhcc-----CCCCceeEEEEEec
Q 015084 387 AFF-QTEASMNH-----HYEVLFHTRFLLFL 411 (413)
Q Consensus 387 AF~-~~D~~l~~-----~~sG~TA~vvlI~~ 411 (413)
+|+ ++|..|.+ ...|+||++++|.-
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~ 151 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKK 151 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEec
Confidence 999 69999996 26799999998863
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.52 E-value=4.3e-14 Score=144.08 Aligned_cols=90 Identities=23% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCcccCCCceeeeecCCCC--------CCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHH
Q 015084 313 GAKKLPMEDVCYYHWPLPG--------VDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVL 384 (413)
Q Consensus 313 ggrr~tMEDah~~~~~l~~--------~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL 384 (413)
.|.|.+|||++++..++.. ....+||||||||||..+++||+++|++.|.+.... ..+++++|
T Consensus 73 ~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~---------~~~~~~al 143 (365)
T PLN03145 73 IGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF---------PREIEKVV 143 (365)
T ss_pred ccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc---------chhHHHHH
Confidence 3457889999988776421 234689999999999999999999999999763222 33678999
Q ss_pred HHHHHHHHHHhccC-------CCCceeEEEEEec
Q 015084 385 RDAFFQTEASMNHH-------YEVLFHTRFLLFL 411 (413)
Q Consensus 385 ~~AF~~~D~~l~~~-------~sG~TA~vvlI~~ 411 (413)
++||.++|+.|.+. ..||||++++|.-
T Consensus 144 ~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~ 177 (365)
T PLN03145 144 SSAFLQTDTAFAEACSLDASLASGTTALAALVVG 177 (365)
T ss_pred HHHHHHHhHHHHhhhccccCCCCcCcEEEEEEEC
Confidence 99999999999653 4699999999864
No 5
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.50 E-value=4.2e-13 Score=110.21 Aligned_cols=91 Identities=38% Similarity=0.650 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCCCC-CeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecC
Q 015084 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPS-DVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (413)
Q Consensus 178 ~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~~~-divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~ 256 (413)
+.|.+..++..+..+.|..+. .++|||++.| ++.+.+..||+.||.|.++.+ +.|++.|..|+|||+||++++.
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~----~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~-~~~~~~~~~s~~g~~vn~~~~~ 76 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGG----TYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD-GGVVLIDLGSTNGTFVNGQRVS 76 (102)
T ss_pred eEEEEecCCCceeEEEECCCC----eEEECcCCCcCCEEcCCCCeeCcceEEEEcCC-CCEEEEECCCCCCeEECCEECC
Confidence 577888877777889998832 6999999999 999999999999999999984 3689999999999999999998
Q ss_pred CCCCCCCCCCCceecCCCCEEEEcc
Q 015084 257 HPDSGSRHWGKPMELTSGDIITLGT 281 (413)
Q Consensus 257 ~~~~~~r~~g~~~~L~~GD~I~lG~ 281 (413)
. +.+..|.+||.|.+|.
T Consensus 77 ~--------~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 77 P--------GEPVRLRDGDVIRLGN 93 (102)
T ss_pred C--------CCcEECCCCCEEEECC
Confidence 6 4679999999999995
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.44 E-value=8.4e-14 Score=134.28 Aligned_cols=93 Identities=33% Similarity=0.392 Sum_probs=78.2
Q ss_pred CCcccCCCceeeeecCCC---CCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHH
Q 015084 313 GAKKLPMEDVCYYHWPLP---GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFF 389 (413)
Q Consensus 313 ggrr~tMEDah~~~~~l~---~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~ 389 (413)
+|+|.+|||.|++..++. ...+..+|||||||||..+|+|++++|++.+.+..... ....+.++|+++|.
T Consensus 8 ~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~-------~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 8 QGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFN-------DGNDIEEALRQAFL 80 (254)
T ss_dssp ECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHH
T ss_pred CCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccc-------cccchhhcccceee
Confidence 567788999999999764 45678899999999999999999999998888766541 11278999999999
Q ss_pred H-HHHHhcc-----C--CCCceeEEEEEecc
Q 015084 390 Q-TEASMNH-----H--YEVLFHTRFLLFLS 412 (413)
Q Consensus 390 ~-~D~~l~~-----~--~sG~TA~vvlI~~~ 412 (413)
+ +|+.+.. . .+||||++++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~ 111 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGN 111 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETT
T ss_pred ecccccccccccccccccccccccccccccc
Confidence 9 9999875 3 88999999999753
No 7
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.43 E-value=8.4e-13 Score=135.97 Aligned_cols=94 Identities=32% Similarity=0.496 Sum_probs=80.5
Q ss_pred EEEEEeCC----CCCeEEEeccCCCCCCcEEeCCCCCCCeEeCCcc--cccceeEEEEeCCcceEEEEEcCCCCceeeC-
Q 015084 179 SLEVVSGP----SRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN- 251 (413)
Q Consensus 179 ~L~vi~G~----~~g~~~~L~~~~~~~~~~~IGR~~~~divl~d~~--VSr~HA~I~~~~~~~~~~L~DlgStNGT~VN- 251 (413)
.|.|++.. ..+.++.+..+ .++|||++.|+++|.|+. ||++||+|.++.+ .|+|+|+ |+||||||
T Consensus 2 ~L~v~n~~~l~~g~~~~~~f~~~-----~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~Dl-StNGT~VN~ 73 (396)
T TIGR03354 2 VLTVLNAHQLTPGIAAQKTFGTN-----GGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDL-STNGVFLNG 73 (396)
T ss_pred EEEEeccccCCCCcceEEEECCC-----CEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEEC-CCCCeEECC
Confidence 56666432 24567888776 589999999999999988 9999999999875 7999999 99999999
Q ss_pred -CeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 252 -SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 252 -g~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
|+++.+ +.++.|++||+|+||.+.+.+..
T Consensus 74 sg~~l~~--------~~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 74 SGSPLGR--------GNPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCCCC--------CCceEcCCCCEEEECCEEEEEEe
Confidence 888886 56799999999999999988765
No 8
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.41 E-value=1.8e-13 Score=136.10 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=71.4
Q ss_pred cccccCchhhhcCCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccH
Q 015084 301 VGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDA 380 (413)
Q Consensus 301 v~~~~d~~~~~Rggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i 380 (413)
+.+....|+.|| .+|||+|.++++|.. ++++|||||||||.+||+||++.||.+|.+.... ...++
T Consensus 22 L~yg~s~MQGWR----vsqEDAHNci~~ld~--~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k~y--------k~g~~ 87 (542)
T KOG0699|consen 22 LSYGCSTMQGWR----VSQEDAHNCIVDLDT--DTHMFGVYDGHGGTEVAKYCAAKLPDFLKERKFY--------KAGDV 87 (542)
T ss_pred chhchhhhhccc----cchhhhhcccccccC--cceEEEEecCCCcHHHHHHHHHhhhHHHHhHHhh--------hcccH
Confidence 344556787777 999999999999864 5699999999999999999999999999875443 35689
Q ss_pred HHHHHHHHHHHHHHhccC
Q 015084 381 SDVLRDAFFQTEASMNHH 398 (413)
Q Consensus 381 ~~aL~~AF~~~D~~l~~~ 398 (413)
..||++||+..|..|..+
T Consensus 88 ~~aL~~AFl~fD~~l~~e 105 (542)
T KOG0699|consen 88 AEALQKAFLDFDDFLRAE 105 (542)
T ss_pred HHHHHHHHhchhhhhcCH
Confidence 999999999999988765
No 9
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.40 E-value=8.3e-13 Score=143.54 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=79.9
Q ss_pred CceEEEEEEeCCCC-CeEEEeccCCCCCCcEEeCCCCCCCe-----EeCCcccccceeEEEEeCCcceEEEEEcCCCCce
Q 015084 175 RSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVSPSDV-----LLKDSEVSGKHALINWNPNKLKWELVDMGSLNGT 248 (413)
Q Consensus 175 ~~~~~L~vi~G~~~-g~~~~L~~~~~~~~~~~IGR~~~~di-----vl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT 248 (413)
...|.|........ ...+.|... ...|++|||.+.||+ +|+++.||+.||+|.++++ .|+|+||+|+|||
T Consensus 531 ~~~w~l~~~~~~~~~~~~~~l~~~--~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~--~~~~~Dl~S~nGT 606 (668)
T PLN02927 531 KGEWYLIPHGDDCCVSETLCLTKD--EDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG--AFFLMDLRSEHGT 606 (668)
T ss_pred cCCeEEEecCCCCcccceeeeecC--CCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC--EEEEEECCCCCcc
Confidence 35688888744433 345777433 235899999999996 9999999999999999986 7999999999999
Q ss_pred eeCCee---cCCCCCCCCCCCCceecCCCCEEEEcceeEE
Q 015084 249 LLNSQP---INHPDSGSRHWGKPMELTSGDIITLGTTSSI 285 (413)
Q Consensus 249 ~VNg~~---i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~ 285 (413)
||||.+ +..+ ++.+..|++||+|+||+.+..
T Consensus 607 ~v~~~~~~r~~~~------p~~~~~l~~~d~I~~g~~~~~ 640 (668)
T PLN02927 607 YVTDNEGRRYRAT------PNFPARFRSSDIIEFGSDKKA 640 (668)
T ss_pred EEeCCCCceEecC------CCCceEeCCCCEEEeCCCcce
Confidence 997766 5421 156799999999999996543
No 10
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.31 E-value=5.8e-12 Score=129.14 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHH
Q 015084 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (413)
Q Consensus 313 ggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D 392 (413)
.|+|.+|||+|++..+ ...+||||||||||..||+|++++|++.+.+... ....++|+++|..+|
T Consensus 30 ~G~R~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~-----------~~~~~~l~~a~~~~d 94 (381)
T PTZ00224 30 NGYRESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE-----------PMTDERMEELCLEID 94 (381)
T ss_pred CCCCCCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc-----------cccHHHHHHHHHHHH
Confidence 4567889999886542 2457999999999999999999999987754211 112456999999999
Q ss_pred HHhccC--CCCceeEEEEEec
Q 015084 393 ASMNHH--YEVLFHTRFLLFL 411 (413)
Q Consensus 393 ~~l~~~--~sG~TA~vvlI~~ 411 (413)
++|.+. .+||||++++|+.
T Consensus 95 ~~i~~~~~~~GsTatv~lI~~ 115 (381)
T PTZ00224 95 EEWMDSGREGGSTGTFCVIMK 115 (381)
T ss_pred HHHHhcccCCCCeEEEEEEEE
Confidence 999766 5699999998864
No 11
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-11 Score=113.05 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=66.0
Q ss_pred cEEeCCCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcce
Q 015084 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (413)
Q Consensus 203 ~~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~ 282 (413)
.++|||++.++++++|..|||+||.|.++.+ .|+++|++|+|||||||+++.. .+.|++||.|.||..
T Consensus 90 ~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~--~~~~~d~~S~nGt~vn~~~v~~----------~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDIVLDDDVVSRRHAELRREGN--EVFLEDLGSTNGTYVNGEKVRQ----------RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCEEcCCCccccceEEEEEeCC--ceEEEECCCCcceEECCeEccC----------cEEcCCCCEEEECcc
Confidence 4899999999999999999999999999997 6999999999999999999994 388999999999999
Q ss_pred eE
Q 015084 283 SS 284 (413)
Q Consensus 283 ~~ 284 (413)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 88
No 12
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.29 E-value=1e-11 Score=132.35 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=97.9
Q ss_pred CCCCCCccccCCCceEEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCCCCCeEeCCcccccceeEEEEeCCcce------
Q 015084 163 FPEFLPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLK------ 236 (413)
Q Consensus 163 l~~~~p~~~~~~~~~~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~------ 236 (413)
..+.+|.+.+.....+.|+++.++..-....|.... -++|||...||+.+.++.|||.||.+.+...+..
T Consensus 142 ~py~vppw~~P~~~~~~lEvlKeg~iiet~~l~~~~----~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~ 217 (793)
T KOG1881|consen 142 APYEVPPWSGPPAAIFQLEVLKEGAIIETEDLKGAA----ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASN 217 (793)
T ss_pred CcccCCCCCCCcccchhhhhhccCceeeeeecccce----eEEecccCCCccccccCcccccceeeeccCCCCCccccCC
Confidence 335677777777778999999877666667777654 5999999999999999999999999999765444
Q ss_pred ---EEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEeeec
Q 015084 237 ---WELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITS 291 (413)
Q Consensus 237 ---~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~~~~ 291 (413)
|+|.|+|||+|||+|-.++.+ +.| ..++.|+++++|+.+++|.--.+
T Consensus 218 ~~g~~i~dlgsThgt~~NK~rvpp-----k~y---ir~~Vg~v~~fggsTrl~i~Qgp 267 (793)
T KOG1881|consen 218 GEGWYIYDLGSTHGTFLNKDRVPP-----KVY---IRDRVGHVARFGGSTRLYIFQGP 267 (793)
T ss_pred CCceEEeeccccccceeccccCCC-----cch---hhhhHHHHHHhcCceEEEEeeCC
Confidence 999999999999999999987 455 99999999999999988765433
No 13
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.21 E-value=2.7e-11 Score=88.63 Aligned_cols=50 Identities=38% Similarity=0.626 Sum_probs=46.9
Q ss_pred EeCCCC-CCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeec
Q 015084 205 TLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (413)
Q Consensus 205 ~IGR~~-~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i 255 (413)
+|||.+ .|+++++++.||+.||+|.++.+ +.|+|.|++|+|||||||+++
T Consensus 2 ~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 2 TIGRSSEDCDIQLPGPSISRRHAEIVYDGG-GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred EeCCCCCCCCEEeCCCCcchhHcEEEECCC-CeEEEEECCCCCCeeECCEEC
Confidence 799999 99999999999999999999887 369999999999999999975
No 14
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.06 E-value=3.7e-10 Score=114.44 Aligned_cols=80 Identities=29% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhh-------hhh--------------c----cCcccHHHHHHH
Q 015084 332 VDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLK-------RER--------------L----LSQCDASDVLRD 386 (413)
Q Consensus 332 ~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~-------~~~--------------~----~~~~~i~~aL~~ 386 (413)
...+-||||||||||.+|++|+++||..+|...+..-+. .+. . .....+.+||.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 345679999999999999999999999999865543110 010 0 113679999999
Q ss_pred HHHHHHHHhccC------------CCCceeEEEEEec
Q 015084 387 AFFQTEASMNHH------------YEVLFHTRFLLFL 411 (413)
Q Consensus 387 AF~~~D~~l~~~------------~sG~TA~vvlI~~ 411 (413)
||.+||++|... .+||||+|.+|.-
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~ 212 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKG 212 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeC
Confidence 999999999754 4599999998864
No 15
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.05 E-value=4.2e-10 Score=114.48 Aligned_cols=95 Identities=27% Similarity=0.348 Sum_probs=76.2
Q ss_pred EEEEEEeCCC--CC--eEEEeccCCCCCCcEEeCCCCCCCeEeCCcc--cccceeEEEEeCCcceEEEEEcCCCCceeeC
Q 015084 178 LSLEVVSGPS--RG--IRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (413)
Q Consensus 178 ~~L~vi~G~~--~g--~~~~L~~~~~~~~~~~IGR~~~~divl~d~~--VSr~HA~I~~~~~~~~~~L~DlgStNGT~VN 251 (413)
++|.+++... .| .++.+..+ ..+|||+++||+.|+|+. ||+.||+|.++.+ .|+|.|. |.||||||
T Consensus 3 lsL~vtn~~~l~sG~~aq~~f~~~-----~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg--~f~L~Dt-S~g~l~VN 74 (430)
T COG3456 3 LSLQVTNAQKLESGKAAQKLFDRG-----GGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG--GFCLTDT-SNGGLLVN 74 (430)
T ss_pred eEEEEeccccCCCchhhhhhhhcC-----CcccccCCCCCccccCcccccchhheEEEecCC--eEEEEec-CCCceeec
Confidence 5666664322 22 24445444 369999999999999874 9999999999986 6999998 79999999
Q ss_pred CeecCCCCCCCCCCCCc-eecCCCCEEEEcceeEEEEe
Q 015084 252 SQPINHPDSGSRHWGKP-MELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 252 g~~i~~~~~~~r~~g~~-~~L~~GD~I~lG~~~~~~~~ 288 (413)
|..+.. |.. .+|+.||+|.||...+.+.-
T Consensus 75 gs~~~~--------g~~~~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 75 GSDLPL--------GEGSARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred ccccCC--------CCCccccccCCEEeeccEEEEEEe
Confidence 998886 566 99999999999999876654
No 16
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=98.92 E-value=9.2e-10 Score=104.58 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=86.1
Q ss_pred CCCccccCCCceEEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCC-CCCeEeCCcccccceeEEEEeC------C-----
Q 015084 166 FLPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNP------N----- 233 (413)
Q Consensus 166 ~~p~~~~~~~~~~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~-~~divl~d~~VSr~HA~I~~~~------~----- 233 (413)
..|..+-....-|.|-..++...+.+..++...+ +.+||.. -.||.++++..|.+||.|.+.. +
T Consensus 162 ~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~----yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~gr 237 (293)
T KOG1882|consen 162 NEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSC----YLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGR 237 (293)
T ss_pred cCCchhcCchhheecccccCCcccchheeeeeee----eecCceeeeeccCCCCccccccceeeeeeecccccCCCccce
Confidence 3444444455678888888777766666666554 8999966 7899999999999999999853 2
Q ss_pred cceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 234 KLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 234 ~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
-.+-||.||||+||||||.++|.+ ...++|..+|+|+||.....++.
T Consensus 238 rvkpYiiDLgS~NgTfLNnk~Iep--------qRYyEL~ekDvlkfgfs~rEyvl 284 (293)
T KOG1882|consen 238 RVKPYIIDLGSGNGTFLNNKVIEP--------QRYYELREKDVLKFGFSSREYVL 284 (293)
T ss_pred eeeeEEEecCCCCcceecCcccCc--------hheeeeecCceeeeccchHHHHH
Confidence 134699999999999999999997 24599999999999976655543
No 17
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=98.88 E-value=7.1e-09 Score=101.35 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=64.3
Q ss_pred cCCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHH
Q 015084 312 RGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (413)
Q Consensus 312 Rggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~ 391 (413)
.|..|.+|||++.+..+-.+.. ..||+|||||||..++++|++.+.+.|.+.+....... ....+.+.|+++|..+
T Consensus 16 ~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 91 (262)
T COG0631 16 VGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNS---LNESLEELLKEAILKA 91 (262)
T ss_pred CCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccc---cchhHHHHHHHHHHHH
Confidence 3566678999999887544444 78999999999999999999999999998655411110 0111789999999999
Q ss_pred HHHhccC
Q 015084 392 EASMNHH 398 (413)
Q Consensus 392 D~~l~~~ 398 (413)
++.+...
T Consensus 92 n~~i~~~ 98 (262)
T COG0631 92 NEAIAEE 98 (262)
T ss_pred HHHHHHh
Confidence 9999875
No 18
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=98.84 E-value=8e-09 Score=102.48 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=64.5
Q ss_pred CCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhh-------------------------------hhhhccCcccH
Q 015084 332 VDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSL-------------------------------KRERLLSQCDA 380 (413)
Q Consensus 332 ~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~-------------------------------~~~~~~~~~~i 380 (413)
..+-+||.+||||.|++||--+++.|+++|.+.+.+-. ..+++..++.+
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 34567999999999999999999999999988655311 11334556778
Q ss_pred HHHHHHHHHHHHHHhccC------CCCceeEEEEEec
Q 015084 381 SDVLRDAFFQTEASMNHH------YEVLFHTRFLLFL 411 (413)
Q Consensus 381 ~~aL~~AF~~~D~~l~~~------~sG~TA~vvlI~~ 411 (413)
..||+.||+.||++|.++ .-||||++|+.+.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~ll 257 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLL 257 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeec
Confidence 999999999999999987 3499999998764
No 19
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.77 E-value=4.1e-08 Score=92.68 Aligned_cols=93 Identities=30% Similarity=0.423 Sum_probs=72.2
Q ss_pred CCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHH
Q 015084 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (413)
Q Consensus 313 ggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D 392 (413)
+|.|..+||++.+...... .+..+|+|+|||||...++++++.+.+.+.+.+..... .....+...|+++|.+++
T Consensus 9 ~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 83 (254)
T cd00143 9 GGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT----LSEEDIEEALRKAFLRAD 83 (254)
T ss_pred CCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHH
Confidence 5667789999988665321 34679999999999999999999999999886654110 124567889999999999
Q ss_pred HHhccC--------CCCceeEEEEEe
Q 015084 393 ASMNHH--------YEVLFHTRFLLF 410 (413)
Q Consensus 393 ~~l~~~--------~sG~TA~vvlI~ 410 (413)
+.+... ..|||++++++.
T Consensus 84 ~~l~~~~~~~~~~~~~gtT~~~~~~~ 109 (254)
T cd00143 84 EEILEEAQDEPDDARSGTTAVVALIR 109 (254)
T ss_pred HHHHHhhhhccCCCCCCCcEEEEEEE
Confidence 998654 458998888764
No 20
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.65 E-value=1.7e-07 Score=89.00 Aligned_cols=92 Identities=32% Similarity=0.362 Sum_probs=71.6
Q ss_pred cCCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHH
Q 015084 312 RGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (413)
Q Consensus 312 Rggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~ 391 (413)
++|+|..+||++.+..++. ....+|+|+|||||..+|+++++.+.+.+.+...... .....+.+.|+++|.++
T Consensus 13 ~~~~r~~neD~~~~~~~~~--~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 85 (255)
T smart00332 13 MQGVRKPMEDAHVITPDLS--DSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHK-----DELEDVEEALRKAFLKT 85 (255)
T ss_pred CCCCCCCCcceEEEeccCC--CCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcc-----cchhHHHHHHHHHHHHH
Confidence 4778888999998876542 4567999999999999999999999988876543210 01235888999999999
Q ss_pred HHHhccC--------CCCceeEEEEEe
Q 015084 392 EASMNHH--------YEVLFHTRFLLF 410 (413)
Q Consensus 392 D~~l~~~--------~sG~TA~vvlI~ 410 (413)
++.+... ..|||++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~gtT~~~~~~~ 112 (255)
T smart00332 86 DEEILEELESLEEDAGSGSTAVVALIS 112 (255)
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEEE
Confidence 9999764 348998888765
No 21
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.56 E-value=4.7e-08 Score=95.66 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=89.1
Q ss_pred CCCccccCCCceEEEEEEeCCCC-CeEEEeccCCCCCCcEEeCCCC-CCCeEeCCcccccceeEEEEeCCcceEEEEEcC
Q 015084 166 FLPKAIADQRSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMG 243 (413)
Q Consensus 166 ~~p~~~~~~~~~~~L~vi~G~~~-g~~~~L~~~~~~~~~~~IGR~~-~~divl~d~~VSr~HA~I~~~~~~~~~~L~Dlg 243 (413)
..|.++...+.-+.|.+..|... ...+.+... .+.+||.. .||++|++..+||.||.+.+......++|.||+
T Consensus 6 ~~p~wA~kpp~g~hldv~k~d~li~kl~iddkr-----~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~ 80 (337)
T KOG1880|consen 6 DPPSWAGKPPAGLHLDVVKGDKLIQKLIIDDKR-----RYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLG 80 (337)
T ss_pred CCCCcccCCCCCCceeeeecchhHHHHHhhhhh-----hhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEcc
Confidence 46777777777778887766532 233333333 48999999 899999999999999999887765569999999
Q ss_pred CCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 244 SLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 244 StNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
|++|||+...+++. -+++.|..|..+.||..+..|..
T Consensus 81 s~hgtf~g~~rL~~--------~~p~~l~i~~~~~fgasTr~y~l 117 (337)
T KOG1880|consen 81 STHGTFLGNERLEP--------HKPVQLEIGSTFHFGASTRIYLL 117 (337)
T ss_pred CCcceeeeeeeecc--------CCCccccCCceEEEeccceeeee
Confidence 99999999999997 47899999999999998877754
No 22
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=98.54 E-value=2.1e-07 Score=101.28 Aligned_cols=90 Identities=21% Similarity=0.253 Sum_probs=61.0
Q ss_pred cCCcccCCCceeeeecCCC-----CC---CcceEEEEecCCChhH----HHHHHhhhHHHHHHHHhhhhhhhhhccCccc
Q 015084 312 RGAKKLPMEDVCYYHWPLP-----GV---DKFGLFGICDGHGGSA----AAKSASEILPKMVAAILSDSLKRERLLSQCD 379 (413)
Q Consensus 312 Rggrr~tMEDah~~~~~l~-----~~---~~~~~FGVFDGHGG~~----aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~ 379 (413)
.|++|..|||++.+..++. .. ...++|+|||||||.. ||+++.++|++.+.+.... ...
T Consensus 383 ~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~---------~~~ 453 (645)
T PRK14559 383 VGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQD---------ELP 453 (645)
T ss_pred CCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcc---------ccc
Confidence 4667888999987654321 11 1357999999999887 5666667776666543221 112
Q ss_pred HHHHHHHHHHHHHHHhccC----------CCCceeEEEEEe
Q 015084 380 ASDVLRDAFFQTEASMNHH----------YEVLFHTRFLLF 410 (413)
Q Consensus 380 i~~aL~~AF~~~D~~l~~~----------~sG~TA~vvlI~ 410 (413)
.++.|++||..++..|.+. ..|||+++++|.
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~ 494 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQ 494 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEE
Confidence 3567888888888888542 359999998874
No 23
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=98.21 E-value=5.4e-06 Score=86.14 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=80.1
Q ss_pred EEEEEEeCCCCCeEEEeccCCCCCCcEEeC-CCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecC
Q 015084 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLG-RVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (413)
Q Consensus 178 ~~L~vi~G~~~g~~~~L~~~~~~~~~~~IG-R~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~ 256 (413)
+.|+|++|+..|.++.|..+. ++|| +.+.|||+|.|+.||+.|++|.++.+ .+++.+ +..++++||.++.
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g~-----~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~--~~~l~~--~~~~~~~~g~~~~ 71 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEGN-----LVLGTDAADCDIVLSDGGIAAVHVSLHVRLE--GVTLAG--AVEPAWEEGGVLP 71 (410)
T ss_pred CEEEEecCCCCCcEEECCCCc-----eEeccCCCCcEEEeCCCCccchheEEEEcCc--eEEEec--CCcceeECCcccc
Confidence 478999999999999999984 8999 99999999999999999999999886 588886 4778999994443
Q ss_pred CCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 257 HPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 257 ~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
. .+...|..+..|.+|...+.+..
T Consensus 72 ~--------~~g~~l~~~~~l~~g~~~~~~g~ 95 (410)
T TIGR02500 72 D--------EEGTPLPSGTPLLVAGVAFALGE 95 (410)
T ss_pred c--------CCCCccCCCCceecceeEEeccC
Confidence 2 23467889999999999888854
No 24
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=3.3e-05 Score=79.41 Aligned_cols=78 Identities=31% Similarity=0.321 Sum_probs=65.1
Q ss_pred cEEeCCCCCCCeEeCCcccccceeEEEEe-------------CCcceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCce
Q 015084 203 PLTLGRVSPSDVLLKDSEVSGKHALINWN-------------PNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (413)
Q Consensus 203 ~~~IGR~~~~divl~d~~VSr~HA~I~~~-------------~~~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~ 269 (413)
.+++||.+.||..+....+|..|..|..- ..+..+++.|. |+||||||...+.+ +...
T Consensus 65 ~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k--------~~~r 135 (475)
T KOG0615|consen 65 EFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGK--------GLSR 135 (475)
T ss_pred eEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhc--------cccc
Confidence 59999999999999988899888887654 22357899997 99999999999987 6678
Q ss_pred ecCCCCEEEEcceeEEEEee
Q 015084 270 ELTSGDIITLGTTSSIHVQI 289 (413)
Q Consensus 270 ~L~~GD~I~lG~~~~~~~~~ 289 (413)
.|++||.|.||.+.....-+
T Consensus 136 ~lkN~dei~is~p~~~~~v~ 155 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFVF 155 (475)
T ss_pred cccCCCEEEeccchhheeee
Confidence 89999999999987554433
No 25
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.81 E-value=0.0033 Score=66.29 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=77.1
Q ss_pred eEEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCC-CCCeEeC------CcccccceeEEEEeCCcceEEEEEcCCCCcee
Q 015084 177 CLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLK------DSEVSGKHALINWNPNKLKWELVDMGSLNGTL 249 (413)
Q Consensus 177 ~~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~-~~divl~------d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~ 249 (413)
..++-|+.|... .+.+.+. .+++||+. ++.|-|+ ...|||+.|.|...++ |.|+|..+| .--.|
T Consensus 430 hgAiAvL~Gr~s--kh~mrk~-----EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-GsF~IkNlG-K~~I~ 500 (547)
T KOG2293|consen 430 HGAIAVLYGRFS--KHYMRKK-----EVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-GSFFIKNLG-KRSIL 500 (547)
T ss_pred cceeEEEechhh--HhhhcCc-----ceEeeccCCCcceeeeccccCccceeeccceeEEeccC-CcEEeccCc-ceeEE
Confidence 347778887643 4556655 58999999 4444442 3369999999999988 699999996 88999
Q ss_pred eCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 250 LNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 250 VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
|||.+|.+ |+.+.|++.-+|+|-+.+|+|.-
T Consensus 501 vng~~l~~--------gq~~~L~~nclveIrg~~FiF~~ 531 (547)
T KOG2293|consen 501 VNGGELDR--------GQKVILKNNCLVEIRGLRFIFEI 531 (547)
T ss_pred eCCccccC--------CceEEeccCcEEEEccceEEEee
Confidence 99999998 88899999999999999988864
No 26
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.54 E-value=0.0077 Score=67.87 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=69.8
Q ss_pred ceEEEEEEe-CCCCC--eEEEeccCCCCCCcEEeCCCC---CCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCcee
Q 015084 176 SCLSLEVVS-GPSRG--IRCSVQSANASRLPLTLGRVS---PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTL 249 (413)
Q Consensus 176 ~~~~L~vi~-G~~~g--~~~~L~~~~~~~~~~~IGR~~---~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~ 249 (413)
....|+-+. .|... ..|.|..|. .+|||.+ ..||+|....|--+||.|.-.++..-+.|.-. -..-||
T Consensus 453 k~phLVNLneDPllSe~LlY~ikeG~-----TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aety 526 (1221)
T KOG0245|consen 453 KTPHLVNLNEDPLLSECLLYYIKEGE-----TRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETY 526 (1221)
T ss_pred cCcceeccCCCchhhccEEEEeccCc-----eecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccC-Ccccee
Confidence 345555553 22221 457788885 5999987 78999999999999999998887433455443 466799
Q ss_pred eCCeecCCCCCCCCCCCCceecCCCCEEEEccee
Q 015084 250 LNSQPINHPDSGSRHWGKPMELTSGDIITLGTTS 283 (413)
Q Consensus 250 VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~ 283 (413)
|||+.|.. +..|+.||.|-+|+..
T Consensus 527 VNGk~v~e----------p~qL~~GdRiilG~~H 550 (1221)
T KOG0245|consen 527 VNGKLVTE----------PTQLRSGDRIILGGNH 550 (1221)
T ss_pred EccEEcCC----------cceeccCCEEEEcCce
Confidence 99999995 5899999999999964
No 27
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=96.18 E-value=0.029 Score=51.31 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=44.5
Q ss_pred ceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHHHHhccC---CCCceeEEEEE
Q 015084 335 FGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHH---YEVLFHTRFLL 409 (413)
Q Consensus 335 ~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D~~l~~~---~sG~TA~vvlI 409 (413)
..+|+|+||||+...|.+++..+...+.+.... ... +.+.+..+++.+... ..|||++++.|
T Consensus 30 ~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~---------~~~----~~~~l~~~n~~l~~~~~~~~~~T~~~~~i 94 (193)
T smart00331 30 RLLIAIADVMGKGLAAALAMSMARSALRTLLSE---------GIS----LSQILERLNRAIYENGEDGMFATLFLALY 94 (193)
T ss_pred eEEEEEEecCCCChHHHHHHHHHHHHHHHHhhc---------CCC----HHHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 468999999998888888888888888765443 112 444555666666554 45889888876
No 28
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=96.14 E-value=0.014 Score=54.12 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=31.6
Q ss_pred CcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHHhh
Q 015084 314 AKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILS 366 (413)
Q Consensus 314 grr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~ 366 (413)
|++.+.||++.+... .+..+++|.||+||...++.++..+-+.+.+.+.
T Consensus 7 ~~~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~ 55 (212)
T PF13672_consen 7 GRGAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLK 55 (212)
T ss_dssp TTSSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHH
Confidence 445679999984433 3345889999999888776666666666655444
No 29
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.87 E-value=0.065 Score=57.74 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred EEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecCC
Q 015084 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINH 257 (413)
Q Consensus 178 ~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~~ 257 (413)
.+|...++.. ..+.|..+ .++|||.|.- .|.|...||+...+..+-.++.+.+.-|| .|.+-|||+.+.+
T Consensus 15 c~l~~~~~~~--~~~~~~~~-----~~~~gr~pet--~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~ 84 (526)
T TIGR01663 15 CTLKPGEAEH--HFIHLDAG-----ALFLGRGPET--GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKP 84 (526)
T ss_pred eEecCCCCCC--CeeccCCC-----ceEEccCccc--ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecC
Confidence 3444444443 45666655 5889999866 45599999999999998887778899996 8999999999998
Q ss_pred CCCCCCCCCCceecCCCCEEEEcceeEEE
Q 015084 258 PDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (413)
Q Consensus 258 ~~~~~r~~g~~~~L~~GD~I~lG~~~~~~ 286 (413)
|..+.|++||.+.|=....-|
T Consensus 85 --------~~~~~l~~g~~l~~v~~~~~~ 105 (526)
T TIGR01663 85 --------GGEGELGHGDLLEIVNGLHPL 105 (526)
T ss_pred --------CCeeeecCCCEEEEeccccce
Confidence 788999999999987765533
No 30
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.51 E-value=0.16 Score=57.29 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=73.6
Q ss_pred EEEEEE--eCCCCCeEEEeccCCCCCCcEEeCCCC--CCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCe
Q 015084 178 LSLEVV--SGPSRGIRCSVQSANASRLPLTLGRVS--PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQ 253 (413)
Q Consensus 178 ~~L~vi--~G~~~g~~~~L~~~~~~~~~~~IGR~~--~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~ 253 (413)
..|+.+ +|....+.+.|..+ +.-+|... ++.|.|..+.|-.+||.|..-.+ -+.+.-..--.-|||||+
T Consensus 357 PvLve~s~dG~~s~~ri~L~~~-----vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG--VvTvTP~~~DA~t~VnGh 429 (1629)
T KOG1892|consen 357 PVLVELSPDGSDSRKRIRLQLS-----VTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG--VVTVTPRSMDAETYVNGH 429 (1629)
T ss_pred cEEEEEcCCCCCcceeEEeccC-----ceeccccccCCcceeeeCCCCCccccchhhccc--eEEecccccchhhhccce
Confidence 344444 56555578889887 46899888 56899999999999999988775 577766533456999999
Q ss_pred ecCCCCCCCCCCCCceecCCCCEEEEcce-eEEEEee
Q 015084 254 PINHPDSGSRHWGKPMELTSGDIITLGTT-SSIHVQI 289 (413)
Q Consensus 254 ~i~~~~~~~r~~g~~~~L~~GD~I~lG~~-~~~~~~~ 289 (413)
+|.. +..|++|+.|+||.. ++.|+..
T Consensus 430 ~isq----------ttiL~~G~~v~fGa~hsfkF~ds 456 (1629)
T KOG1892|consen 430 RISQ----------TTILQSGMKVQFGASHSFKFVDS 456 (1629)
T ss_pred ecch----------hhhhccCCEEEeccceeEEecCC
Confidence 9995 589999999999987 4555543
No 31
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=89.81 E-value=1.3 Score=44.70 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCceeeeecCCCCCCcceEEEEecCCChhH-----HHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHHH
Q 015084 319 MEDVCYYHWPLPGVDKFGLFGICDGHGGSA-----AAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEA 393 (413)
Q Consensus 319 MEDah~~~~~l~~~~~~~~FGVFDGHGG~~-----aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D~ 393 (413)
=||++++.-+ ....+.||.||=||-. .+.|. +.|.+.+.+..+.+. ....+....|.+||.++=+
T Consensus 91 GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS-~eLM~~ce~~v~~~~-----~~~~~P~~lL~~ay~~l~~ 160 (330)
T KOG1379|consen 91 GEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFS-RELMSNCERLVQNSD-----FNPSDPVNLLEKAYAELKS 160 (330)
T ss_pred CCcceeeccC----cccceEEEccccchHhhcCcCHHHHH-HHHHHHHHHHhcccc-----cCCCChHHHHHHHHHHHhh
Confidence 5799987654 3445899999999865 55554 456666665444311 1133788999999988733
Q ss_pred HhccCCCCceeEEEEEe
Q 015084 394 SMNHHYEVLFHTRFLLF 410 (413)
Q Consensus 394 ~l~~~~sG~TA~vvlI~ 410 (413)
+=.-.--+|||+++.+-
T Consensus 161 ~~~~~vGSSTAcI~~l~ 177 (330)
T KOG1379|consen 161 QKVPIVGSSTACILALD 177 (330)
T ss_pred cCCCCCCcceeeeeeee
Confidence 21111346788877664
No 32
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=88.78 E-value=2 Score=44.65 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCCeEEEeccCCCCCCcEEeCCCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeec
Q 015084 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (413)
Q Consensus 176 ~~~~L~vi~G~~~g~~~~L~~~~~~~~~~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i 255 (413)
..++|+.++|+..|+++.|+.| .+++|-. +|||.++=+. ..-..+..+++ .+++.- +.--++|||.+-
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-----~~tlG~~-gcDi~lpL~~--~~~~~L~i~e~--gi~l~~--~~~~vwVnG~~~ 70 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-----NLSLGEK-GCDICIPLTI--NEKIILREQAD--SLFVDA--GKARVRVNGRRF 70 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-----ceeecCC-CceEEEECCC--CCEEEEEEcCC--cEEEec--CCceEEECCEEc
Confidence 4689999999999999999999 4899985 5999987543 23344555665 466642 235689999987
Q ss_pred CCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 256 NHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 256 ~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
.. + ..|--+.+|.+.+..+.+-.
T Consensus 71 ~~--------~--~~LPl~q~Ie~aG~~~vlG~ 93 (395)
T PRK15367 71 NP--------N--KPLPSSGVLQVAGVAIAFGK 93 (395)
T ss_pred CC--------C--CCCCCcchhhhcceEEEecC
Confidence 65 2 45777889998888877743
No 33
>PF15102 TMEM154: TMEM154 protein family
Probab=85.05 E-value=0.92 Score=40.91 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhcccCccCCCCCC
Q 015084 13 LLMLILILLFIFIACKPWRFFFPSYR 38 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (413)
|+.|||+++++++.||+||.-..|++
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss 93 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSS 93 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCcc
Confidence 33444555677777999997654433
No 34
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.44 E-value=3.6 Score=47.03 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=61.2
Q ss_pred EEeCCCCCCCeEeCCcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEccee
Q 015084 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTS 283 (413)
Q Consensus 204 ~~IGR~~~~divl~d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~ 283 (413)
..||-...-||++..-.|=++||.|..+.+ |.+++.-+- ..-++|||..+.. +..|.+||.|-.|...
T Consensus 469 tlig~~~~~~i~l~glgi~p~h~vidI~~d-g~l~~~p~~-~~R~~VNGs~v~~----------~t~L~~GdRiLwGnnH 536 (1714)
T KOG0241|consen 469 TLIGLFKSQDIQLSGLGIQPKHCVIDIESD-GELRLTPLL-NARSCVNGSLVCS----------TTQLWHGDRILWGNNH 536 (1714)
T ss_pred eeeccccCcceeeecCcccCccceeeeccC-CcEEecccc-cceeeecCceecc----------ccccccCceEEecccc
Confidence 589988899999999999999999999988 468888774 4489999998874 4889999999999987
Q ss_pred EEEE
Q 015084 284 SIHV 287 (413)
Q Consensus 284 ~~~~ 287 (413)
|.-+
T Consensus 537 FFrv 540 (1714)
T KOG0241|consen 537 FFRV 540 (1714)
T ss_pred eEEe
Confidence 4443
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=72.98 E-value=1.7 Score=38.13 Aligned_cols=18 Identities=11% Similarity=0.665 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 015084 10 FTVLLMLILILLFIFIAC 27 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (413)
||+||++++||+|++|+|
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 36
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=71.97 E-value=6.1 Score=43.42 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhcccCccCCC
Q 015084 13 LLMLILILLFIFIACKPWRFFFP 35 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (413)
+.|.|+++++|+...++||+...
T Consensus 398 ~~if~iva~ii~~~L~R~rr~~~ 420 (807)
T KOG1094|consen 398 VAIFLIVALIIALMLWRWRRLLS 420 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445566998865
No 37
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=68.32 E-value=3.3 Score=35.03 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCCC
Q 015084 9 VFTVLLMLILILLFIFIACKPWRFFFPSYRS 39 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (413)
.|+++.+++.+||++..-|.-||.++.|++-
T Consensus 22 GVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 22 GVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3444444455555555559999988777643
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=63.58 E-value=16 Score=42.06 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=51.4
Q ss_pred ceEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHHHHhccC--CCCceeEEEEEe
Q 015084 335 FGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHH--YEVLFHTRFLLF 410 (413)
Q Consensus 335 ~~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D~~l~~~--~sG~TA~vvlI~ 410 (413)
.+.||+|||-+-..+..++...+-.++.++++. .++-++-|+.+|+.+..++-.. .-|..++.+.|.
T Consensus 551 ~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~---------~~~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~ 619 (1081)
T KOG0618|consen 551 QATFGCFDGSRNSRVLSLVQDTMASYLAEEVQL---------YGNETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIV 619 (1081)
T ss_pred cceEEEEcCCCchhHHHHHHHHHHHHHHHHHHh---------ccChHHHHHHHHHHHhhhhhhhhccccchhhheeec
Confidence 578999999999999999999999999887765 2233344999999999998655 346656655554
No 39
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=61.55 E-value=8.2 Score=35.57 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccCCCCC--CC----CcccccCcccCCccccch
Q 015084 8 VVFTVLLMLILILLFIFIACKPWRFFFPSY--RS----RSIIKSGELERPLVSDDE 57 (413)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 57 (413)
...|.||+.+..++++.|++|-||.--+.- |- ...+..=||. ||.+||.
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~-pL~~dde 149 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMA-PLEEDDE 149 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceec-ccCCCcc
Confidence 345667777777777777777777543221 11 1222333444 8876654
No 40
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=59.38 E-value=7.4 Score=30.44 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=19.5
Q ss_pred CceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEE
Q 015084 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (413)
Q Consensus 246 NGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~ 286 (413)
+.++|||+...+ ....|++||+|.++...+.+
T Consensus 33 g~V~VNGe~e~r---------rg~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETR---------RGKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB-------------SS----SSEEEEETTEEEEE
T ss_pred CceEECCEEccc---------cCCcCCCCCEEEECCEEEEE
Confidence 568999997664 34789999999998887665
No 41
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.55 E-value=9.3 Score=33.40 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCccCCCC
Q 015084 6 SIVVFTVLLMLILILLFIFIACKPWRFFFPS 36 (413)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
.+++||+++.||+|++++++.-|+=|....+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4678899999999999999999998876555
No 42
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=58.29 E-value=8.2 Score=42.54 Aligned_cols=67 Identities=18% Similarity=0.040 Sum_probs=53.6
Q ss_pred CcccccceeEEEEeCCcceEEEEEcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEeee
Q 015084 218 DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQIT 290 (413)
Q Consensus 218 d~~VSr~HA~I~~~~~~~~~~L~DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~~~ 290 (413)
...+++.|+.|..+-..+.|++.+.| .||..|+|+++.- +.- -.+..|..|-++..|...+.+....
T Consensus 124 ~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~i---gP~--~~~~~l~~g~~~~~~~~~~~~~~p~ 190 (610)
T COG5025 124 AKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSI---GPG--HETQFLKSGLRLDGGGKQMMFTLPS 190 (610)
T ss_pred ccccchhhhhhhcccccCceEEEEec-cCCccccceeecc---CCC--ccceeeccccccccccccccccCcc
Confidence 34589999999998877889999986 8999999998874 111 1378999999999999988776543
No 43
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=56.60 E-value=16 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 015084 9 VFTVLLMLILILLFIFIACKPWR 31 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (413)
.+.+++|+++.++++++||+|=+
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 35566777888999999998865
No 44
>PRK11507 ribosome-associated protein; Provisional
Probab=55.17 E-value=20 Score=28.48 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=25.0
Q ss_pred CceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEE
Q 015084 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (413)
Q Consensus 246 NGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~ 286 (413)
+.+.|||+.-.+ ....|++||+|.+++..+.+
T Consensus 37 g~V~VNGeve~r---------RgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETR---------KRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecc---------cCCCCCCCCEEEECCEEEEE
Confidence 568999996554 23679999999999977654
No 45
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=54.99 E-value=11 Score=36.17 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 015084 9 VFTVLLMLILILLFIFIACKP 29 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (413)
-+++.+++|||++++.++|-+
T Consensus 17 NiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred HHHHHHHHHHHHHHhhhheec
Confidence 477777888888887776543
No 46
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=53.84 E-value=23 Score=28.38 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcceeEEEEe
Q 015084 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (413)
Q Consensus 245 tNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (413)
.+.++|||+.-.+ ....|..||+|.+.+..+....
T Consensus 36 eg~V~vNGe~EtR---------RgkKlr~gd~V~i~~~~~~v~~ 70 (73)
T COG2501 36 EGEVKVNGEVETR---------RGKKLRDGDVVEIPGQRYQVVA 70 (73)
T ss_pred CCeEEECCeeeec---------cCCEeecCCEEEECCEEEEEEe
Confidence 3689999997765 2378999999999998766543
No 47
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=53.19 E-value=13 Score=31.68 Aligned_cols=25 Identities=16% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcc
Q 015084 8 VVFTVLLMLILILLFIFIACKPWRF 32 (413)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (413)
...+++.|+.+|+.+++|++||-++
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~ 77 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSL 77 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhh
Confidence 3467788888888899999998654
No 48
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=47.77 E-value=21 Score=26.65 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=20.2
Q ss_pred CCceeeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 245 tNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
....+|||+.+.+ ..+.|..||.|.+
T Consensus 33 ~G~V~VNg~~~~~---------~~~~l~~Gd~v~i 58 (59)
T TIGR02988 33 ENEVLVNGELENR---------RGKKLYPGDVIEI 58 (59)
T ss_pred cCCEEECCEEccC---------CCCCCCCCCEEEe
Confidence 3568899998854 2378999999976
No 49
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=45.52 E-value=9.9 Score=27.07 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCc
Q 015084 7 IVVFTVLLMLILILLFIFIACKPWR 31 (413)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (413)
.+++|.+.-+..+.++.+|++|.|-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3457777788888999999999995
No 50
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=45.25 E-value=23 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 015084 5 ESIVVFTVLLMLILILLFIFIA 26 (413)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (413)
.+..+++.++++++++++++|+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776
No 51
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=44.38 E-value=31 Score=23.80 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 015084 4 RESIVVFTVLLMLILILLFIFI 25 (413)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (413)
-|.+..++.+||+++.++-+++
T Consensus 9 fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 9 FEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888777665554
No 52
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.52 E-value=34 Score=24.05 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCc
Q 015084 6 SIVVFTVLLMLILILLFIFIACKPWR 31 (413)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (413)
+|++-+++-|.++++.+..|||..-|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666667777777888888876443
No 53
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=41.79 E-value=22 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.4
Q ss_pred CCceeeCCeecCCCCCCCCCCCCceecCCCCEE
Q 015084 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDII 277 (413)
Q Consensus 245 tNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I 277 (413)
.++.+|||+.+..| .+.+..||+|
T Consensus 25 ~g~V~VNg~~v~~~---------~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKDP---------SYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESST---------TSBESTTEEE
T ss_pred CCEEEECCEEEcCC---------CCCCCCcCCC
Confidence 46789999999963 4788999986
No 54
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.68 E-value=36 Score=26.29 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccC
Q 015084 7 IVVFTVLLMLILILLFIFIACKPWRFF 33 (413)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (413)
+-++.++.|.|.++..++||++|-+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 445777788888889999999998855
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.14 E-value=39 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 015084 9 VFTVLLMLILILLFIFIACKPWR 31 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (413)
.+.+++|++.++++++++++|=|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46667777777888888888765
No 56
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=39.76 E-value=23 Score=30.65 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhcccCc
Q 015084 13 LLMLILILLFIFIACKPWR 31 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (413)
+||+++++++.+|..||-|
T Consensus 6 il~~vv~~~i~yf~iRPQk 24 (113)
T PRK06531 6 IIMFVVMLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHHHHHHHheechHH
Confidence 3333333333344455544
No 57
>smart00363 S4 S4 RNA-binding domain.
Probab=39.37 E-value=43 Score=23.31 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcc
Q 015084 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGT 281 (413)
Q Consensus 245 tNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~ 281 (413)
.++.+|||+.+.. ....|..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~---------~~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTK---------PSYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecC---------CCeEeCCCCEEEEcc
Confidence 4568899998843 237789999987743
No 58
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=38.65 E-value=36 Score=27.15 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 015084 10 FTVLLMLILILLFIFIACKP 29 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (413)
++.-+++|+++++++++|++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~r 25 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFR 25 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHhheeEEEEEe
Confidence 33334444445555555553
No 59
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=35.27 E-value=43 Score=25.01 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.8
Q ss_pred ccCcccCCc
Q 015084 44 KSGELERPL 52 (413)
Q Consensus 44 ~~~~~~~~~ 52 (413)
|-+|+++|.
T Consensus 30 QfDDle~~a 38 (51)
T TIGR00847 30 QYDDLKGAA 38 (51)
T ss_pred CCCCCccHH
Confidence 447788773
No 60
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=32.82 E-value=3e+02 Score=24.43 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=35.0
Q ss_pred eEEEEecCCChhHHHHHHhhhHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHHHHhccCCCCceeEEEEEec
Q 015084 336 GLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHHYEVLFHTRFLLFL 411 (413)
Q Consensus 336 ~~FGVFDGHGG~~aA~fas~~L~~~I~~~l~~~~~~~~~~~~~~i~~aL~~AF~~~D~~l~~~~sG~TA~vvlI~~ 411 (413)
-++.|.|+=|---.|.+.+..+...+...... ..+..+.++..-..+-..+.....++|++++.+.+
T Consensus 5 ~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~---------~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 5 YFIIVGDVSGHGVSAALLSAALASAIRELLDE---------GLDPEELLEALNRRLYRDLKGDNRYATACYAIIDP 71 (193)
T ss_dssp EEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT---------TTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEET
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhhhccccceEEEEEecc
Confidence 36788888775555556666666666654433 22233333333333322222223567777776543
No 61
>PHA00007 E cell lysis protein
Probab=32.01 E-value=60 Score=26.46 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 015084 5 ESIVVFTVLLMLILILLFIFIA 26 (413)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (413)
-.|.+|+++|-||+=.++|.|+
T Consensus 7 ~~~LAFLLLLSLlLPSLLImFI 28 (91)
T PHA00007 7 SDTLAFLLLLSLLLPSLLIMFI 28 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999888888887
No 62
>PRK01777 hypothetical protein; Validated
Probab=31.68 E-value=45 Score=27.91 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=21.8
Q ss_pred EcCCCCceeeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 241 DMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 241 DlgStNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
|+ +++-..|||+.+.. ...|++||.|.|
T Consensus 46 ~~-~~~~vgI~Gk~v~~----------d~~L~dGDRVeI 73 (95)
T PRK01777 46 DL-AKNKVGIYSRPAKL----------TDVLRDGDRVEI 73 (95)
T ss_pred cc-ccceEEEeCeECCC----------CCcCCCCCEEEE
Confidence 44 56778899998874 378999999865
No 63
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.63 E-value=46 Score=27.91 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 015084 11 TVLLMLILILLFI 23 (413)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (413)
|+|.++|+++|||
T Consensus 7 llL~l~LA~lLli 19 (95)
T PF07172_consen 7 LLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 64
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=31.51 E-value=31 Score=30.67 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCcc
Q 015084 10 FTVLLMLILILLFIFIACKPWRF 32 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (413)
++++++++++++++++..|+||+
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555566666667777777765
No 65
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.42 E-value=74 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCC
Q 015084 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
.+.+.+|.++++++-|.-||--|+-.+|
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3445555555566666667665554444
No 66
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=29.46 E-value=66 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCceeeCCeecCCCCCCCCCCCCceecCCCCEEEEcc
Q 015084 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGT 281 (413)
Q Consensus 245 tNGT~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~lG~ 281 (413)
.++.+|||+.+.. ....+..||.|.+..
T Consensus 25 ~g~V~vn~~~~~~---------~~~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTK---------PSYKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccC---------CccCcCCCCEEEEcC
Confidence 4678999998854 236788899887764
No 67
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=27.69 E-value=56 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=19.6
Q ss_pred eeeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 248 TLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 248 T~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
.+|||+.++.. .|..+.|++||.|.|
T Consensus 62 VlvN~~di~~l------~g~~t~L~dgD~v~i 87 (94)
T cd01764 62 VLINDTDWELL------GEEDYILEDGDHVVF 87 (94)
T ss_pred EEECCcccccc------CCcccCCCCcCEEEE
Confidence 57899987641 146789999999876
No 68
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=27.34 E-value=60 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=18.1
Q ss_pred eeeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 248 TLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 248 T~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
+.|||+-+.+ ..| ....|++||.|.+
T Consensus 33 V~vNg~~v~~-----~~~-~~~~L~~gD~V~i 58 (65)
T cd00565 33 VALNGEIVPR-----SEW-ASTPLQDGDRIEI 58 (65)
T ss_pred EEECCEEcCH-----HHc-CceecCCCCEEEE
Confidence 4467776665 233 4578999999875
No 69
>PF15102 TMEM154: TMEM154 protein family
Probab=26.58 E-value=42 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCC
Q 015084 10 FTVLLMLILILLFIFIACKPWRFFFPS 36 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
++.++.|+++|++++|+..-+|+-..-
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccC
Confidence 344455556677888888888776554
No 70
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=26.01 E-value=1.1e+02 Score=20.23 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015084 6 SIVVFTVLLMLILILLFIF 24 (413)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (413)
.|+.++++++||--+++++
T Consensus 5 vi~G~ilv~lLlgYLvyAL 23 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444443
No 71
>PF14851 FAM176: FAM176 family
Probab=25.79 E-value=2.1e+02 Score=26.11 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCC
Q 015084 10 FTVLLMLILILLFIFIACKPWRFFF 34 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (413)
|..-|+|+|.++++-..|||-+.+.
T Consensus 30 VC~GLlLtLcllV~risc~~r~~~r 54 (153)
T PF14851_consen 30 VCAGLLLTLCLLVIRISCRPRKRCR 54 (153)
T ss_pred HHHHHHHHHHHHHhhheeecccccc
Confidence 4445666666677778898854443
No 72
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.96 E-value=24 Score=35.45 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccCccC
Q 015084 12 VLLMLILILLFIFIACKPWRFF 33 (413)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (413)
+|+.+|||+++|++.|-++|+-
T Consensus 154 VI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 154 VIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhc
Confidence 3334444566666667777643
No 73
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.75 E-value=57 Score=28.65 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcccCccC
Q 015084 17 ILILLFIFIACKPWRFF 33 (413)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (413)
+++++||+|.|||-|--
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44456666777665544
No 74
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=24.41 E-value=75 Score=24.00 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=16.8
Q ss_pred eeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 249 LLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 249 ~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
.+||+-+.+ .+| ..+.|++||.|.+
T Consensus 33 ~vN~~iv~~-----~~~-~~~~L~~gD~vei 57 (64)
T TIGR01683 33 AVNGEIVPR-----SEW-DDTILKEGDRIEI 57 (64)
T ss_pred EECCEEcCH-----HHc-CceecCCCCEEEE
Confidence 357766654 223 4578999999875
No 75
>PF15234 LAT: Linker for activation of T-cells
Probab=23.25 E-value=85 Score=29.65 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCC
Q 015084 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (413)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (413)
.+|.||+|.++.+|+.-+|-++|...-+
T Consensus 9 ~~LgLLlLplla~LlmALCvrCReLpgS 36 (230)
T PF15234_consen 9 SVLGLLLLPLLAVLLMALCVRCRELPGS 36 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 3555666666666666779999977554
No 76
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.22 E-value=82 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=7.0
Q ss_pred HHHHHHhhcccCc
Q 015084 19 ILLFIFIACKPWR 31 (413)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (413)
+++|--|++||-+
T Consensus 21 ~~~l~kfl~kPi~ 33 (141)
T PRK08476 21 IVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3333456677754
No 77
>PF15240 Pro-rich: Proline-rich
Probab=22.89 E-value=45 Score=31.24 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 015084 12 VLLMLILILLFIF 24 (413)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (413)
|||+||.+.||+|
T Consensus 1 MLlVLLSvALLAL 13 (179)
T PF15240_consen 1 MLLVLLSVALLAL 13 (179)
T ss_pred ChhHHHHHHHHHh
Confidence 4555555544443
No 78
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=22.65 E-value=64 Score=24.42 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=17.0
Q ss_pred eeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 249 LLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 249 ~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
-+|++-+.+ .+| ....|++||.|.+
T Consensus 34 avN~~iv~~-----~~~-~~~~L~dgD~Iei 58 (65)
T PRK06488 34 AVNGELVHK-----EAR-AQFVLHEGDRIEI 58 (65)
T ss_pred EECCEEcCH-----HHc-CccccCCCCEEEE
Confidence 456665554 334 3578999999976
No 79
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=22.33 E-value=89 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=16.8
Q ss_pred eeCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 249 LLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 249 ~VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
.+||+-+.+ ..| ....|++||.|.|
T Consensus 34 ~vN~~~v~~-----~~~-~~~~L~~gD~vei 58 (65)
T PRK06944 34 AVNGDFVAR-----TQH-AARALAAGDRLDL 58 (65)
T ss_pred EECCEEcCc-----hhc-ccccCCCCCEEEE
Confidence 566666654 122 4577999999976
No 80
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=22.28 E-value=1.1e+02 Score=28.70 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCCCCCCcccccCcccC
Q 015084 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRSIIKSGELER 50 (413)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (413)
+++.|-+++++++++.+.|=|||++...+..+..+.++..+
T Consensus 9 ~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~ 49 (183)
T KOG1110|consen 9 FFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPK 49 (183)
T ss_pred hhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCc
Confidence 34444444555555677888888666555566666555444
No 81
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.20 E-value=1e+02 Score=25.80 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=7.8
Q ss_pred CccchhHHHHHHHHHH
Q 015084 1 MATRESIVVFTVLLML 16 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (413)
|..+.+++.+++++.|
T Consensus 1 m~~~~~~~ll~~v~~l 16 (91)
T TIGR01165 1 MSMKKTIWLLAAVAAL 16 (91)
T ss_pred CCcchhHHHHHHHHHH
Confidence 5556665544433333
No 82
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.03 E-value=85 Score=27.06 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=5.9
Q ss_pred HHHHHhhcccCc
Q 015084 20 LLFIFIACKPWR 31 (413)
Q Consensus 20 ~~~~~~~~~~~~ 31 (413)
.++.||..||-|
T Consensus 15 ~i~yF~~iRPQk 26 (109)
T PRK05886 15 GGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHccHHH
Confidence 344455555544
No 83
>PRK07440 hypothetical protein; Provisional
Probab=21.47 E-value=77 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=17.4
Q ss_pred eCCeecCCCCCCCCCCCCceecCCCCEEEE
Q 015084 250 LNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (413)
Q Consensus 250 VNg~~i~~~~~~~r~~g~~~~L~~GD~I~l 279 (413)
+|++-+.+ ..| ....|++||.|.+
T Consensus 40 ~N~~iv~r-----~~w-~~~~L~~gD~IEI 63 (70)
T PRK07440 40 YNGEILHR-----QFW-EQTQVQPGDRLEI 63 (70)
T ss_pred ECCEEeCH-----HHc-CceecCCCCEEEE
Confidence 56666665 344 5688999999976
No 84
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=21.37 E-value=1.5e+02 Score=19.54 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 015084 20 LLFIFIA 26 (413)
Q Consensus 20 ~~~~~~~ 26 (413)
++.+++|
T Consensus 16 l~YLvYA 22 (29)
T PRK14750 16 LGYLVYA 22 (29)
T ss_pred HHHHHHH
Confidence 3333333
No 85
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.28 E-value=6.8e+02 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCcccCCCceeeeecCCCCCCcceEEEEecCCChhHHHHHHhhhHHHHHHHH
Q 015084 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAI 364 (413)
Q Consensus 313 ggrr~tMEDah~~~~~l~~~~~~~~FGVFDGHGG~~aA~fas~~L~~~I~~~ 364 (413)
+|... -.|.+.+...- ...-.++|.||-|.-..|...+....+.+.+.
T Consensus 562 ~g~~v-sGD~y~~~~l~---~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~ 609 (764)
T TIGR02865 562 DGELV-SGDSYSFGKLS---AGKYAVAISDGMGSGPEAAQESSACVRLLEKF 609 (764)
T ss_pred CCCcc-cCceEEEEEEC---CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHH
Confidence 44444 77887654431 22247899999985555555555555555443
No 86
>COG5530 Predicted integral membrane protein [Function unknown]
Probab=20.97 E-value=55 Score=31.05 Aligned_cols=21 Identities=38% Similarity=0.850 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcccCccC
Q 015084 13 LLMLILILLFIFIACKPWRFF 33 (413)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (413)
|..||+|.+|+.+-.|++|||
T Consensus 87 LFAMlli~llL~iEARRyRfF 107 (247)
T COG5530 87 LFAMLLIYLLLRIEARRYRFF 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 334456667777778999977
No 87
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.70 E-value=84 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=19.7
Q ss_pred CCCCCCCCcccccCcccCCccccchh
Q 015084 33 FFPSYRSRSIIKSGELERPLVSDDEA 58 (413)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (413)
.+.-..+..-++.-.|+..|+|+++-
T Consensus 323 v~AttKpL~~v~v~~I~NVlaS~qEL 348 (387)
T PF12751_consen 323 VFATTKPLTDVQVVSIQNVLASEQEL 348 (387)
T ss_pred hhhcCcccccceEEEeeeeeeccceE
Confidence 34445667788888999999998763
No 88
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=20.53 E-value=1.6e+02 Score=18.74 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhcccCcc
Q 015084 15 MLILILLFIFIACKPWRF 32 (413)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (413)
.+.++.=++..+.+|=||
T Consensus 8 ~~~L~~YL~~aLl~PErF 25 (25)
T PF09604_consen 8 AVALFVYLFYALLRPERF 25 (25)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 333333344445778765
Done!