Query 015085
Match_columns 413
No_of_seqs 496 out of 3179
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13796 GTPase YqeH; Provisio 100.0 3.1E-45 6.8E-50 366.2 18.2 254 82-412 1-254 (365)
2 TIGR03597 GTPase_YqeH ribosome 100.0 1.5E-43 3.2E-48 353.7 18.0 248 84-412 1-248 (360)
3 cd01855 YqeH YqeH. YqeH is an 100.0 7.2E-29 1.6E-33 226.7 16.0 189 156-378 1-190 (190)
4 KOG1249 Predicted GTPases [Gen 100.0 9E-30 1.9E-34 254.3 3.5 337 65-411 57-404 (572)
5 COG1161 Predicted GTPases [Gen 99.9 8.2E-24 1.8E-28 208.2 15.2 204 155-411 1-217 (322)
6 cd01858 NGP_1 NGP-1. Autoanti 99.9 4.9E-22 1.1E-26 176.1 13.0 151 190-378 2-157 (157)
7 KOG1249 Predicted GTPases [Gen 99.8 1.8E-21 4E-26 195.0 9.5 246 46-365 12-268 (572)
8 PRK12289 GTPase RsgA; Reviewed 99.8 1.4E-19 3E-24 179.7 14.0 188 152-382 35-238 (352)
9 COG1160 Predicted GTPases [Gen 99.8 8.2E-20 1.8E-24 181.9 10.8 165 180-385 67-243 (444)
10 cd01849 YlqF_related_GTPase Yl 99.8 3.1E-19 6.8E-24 157.8 13.3 141 198-378 1-155 (155)
11 PRK09563 rbgA GTPase YlqF; Rev 99.8 7E-19 1.5E-23 171.0 14.9 175 186-407 14-201 (287)
12 TIGR03596 GTPase_YlqF ribosome 99.8 1.4E-18 3E-23 168.1 15.3 153 186-381 11-176 (276)
13 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 3.3E-18 7.1E-23 148.9 13.8 138 188-380 3-140 (141)
14 cd01856 YlqF YlqF. Proteins o 99.8 4.4E-18 9.5E-23 152.9 13.3 152 185-379 8-171 (171)
15 cd04178 Nucleostemin_like Nucl 99.8 1.3E-18 2.8E-23 156.5 9.7 145 198-378 1-172 (172)
16 cd01859 MJ1464 MJ1464. This f 99.7 1.9E-17 4E-22 146.3 13.9 145 193-378 9-156 (156)
17 TIGR00157 ribosome small subun 99.7 3E-17 6.5E-22 155.9 15.5 163 193-394 33-195 (245)
18 PRK00098 GTPase RsgA; Reviewed 99.7 3.2E-16 7E-21 153.1 16.3 165 193-395 77-241 (298)
19 COG1162 Predicted GTPases [Gen 99.7 2.9E-16 6.3E-21 150.3 14.7 165 195-396 78-242 (301)
20 cd01854 YjeQ_engC YjeQ/EngC. 99.7 3.3E-16 7.2E-21 152.2 15.2 164 193-395 75-238 (287)
21 PRK12288 GTPase RsgA; Reviewed 99.7 3.8E-16 8.3E-21 155.1 14.6 163 195-394 119-281 (347)
22 TIGR03594 GTPase_EngA ribosome 99.6 6E-15 1.3E-19 151.3 13.8 159 182-381 64-233 (429)
23 PRK03003 GTP-binding protein D 99.6 5.7E-15 1.2E-19 153.2 12.8 157 183-380 104-271 (472)
24 KOG2484 GTPase [General functi 99.6 6.7E-15 1.4E-19 143.7 11.7 155 187-380 137-309 (435)
25 PRK00093 GTP-binding protein D 99.6 1.7E-14 3.6E-19 148.3 14.2 159 182-381 66-234 (435)
26 COG1126 GlnQ ABC-type polar am 99.6 2E-15 4.3E-20 137.1 5.7 131 281-412 3-163 (240)
27 COG1116 TauB ABC-type nitrate/ 99.6 5E-15 1.1E-19 137.8 7.6 129 284-413 7-158 (248)
28 KOG1424 Predicted GTP-binding 99.6 3.4E-14 7.3E-19 142.6 13.4 159 185-382 163-373 (562)
29 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 3.2E-15 7E-20 140.6 5.8 129 283-413 7-167 (254)
30 PRK09518 bifunctional cytidyla 99.6 2E-14 4.3E-19 156.0 12.8 158 182-380 340-510 (712)
31 PRK01889 GTPase RsgA; Reviewed 99.5 2.4E-14 5.2E-19 143.2 10.9 150 194-380 110-259 (356)
32 COG3839 MalK ABC-type sugar tr 99.5 7E-15 1.5E-19 144.0 6.3 132 281-413 4-161 (338)
33 KOG2423 Nucleolar GTPase [Gene 99.5 5.9E-14 1.3E-18 136.5 10.3 155 189-381 206-365 (572)
34 COG2884 FtsE Predicted ATPase 99.5 3.6E-14 7.8E-19 126.4 6.4 119 293-412 15-164 (223)
35 COG1120 FepC ABC-type cobalami 99.5 8.7E-14 1.9E-18 131.6 8.7 127 284-412 6-165 (258)
36 COG3842 PotA ABC-type spermidi 99.5 3.6E-14 7.8E-19 139.8 6.3 132 281-413 6-164 (352)
37 COG1136 SalX ABC-type antimicr 99.4 2.7E-13 5.8E-18 125.8 5.8 119 293-412 18-169 (226)
38 COG1125 OpuBA ABC-type proline 99.4 3.9E-13 8.6E-18 124.8 3.9 130 283-413 4-163 (309)
39 COG0410 LivF ABC-type branched 99.3 1.4E-12 2.9E-17 120.0 6.9 126 286-412 9-163 (237)
40 COG1124 DppF ABC-type dipeptid 99.3 1.8E-12 3.9E-17 120.0 7.8 118 294-412 21-168 (252)
41 COG1118 CysA ABC-type sulfate/ 99.3 1.8E-12 3.9E-17 123.5 6.9 127 286-413 8-165 (345)
42 COG1135 AbcC ABC-type metal io 99.3 1.1E-12 2.3E-17 125.2 5.2 118 293-411 19-167 (339)
43 COG1127 Ttg2A ABC-type transpo 99.3 1.5E-12 3.2E-17 120.3 6.0 132 281-413 9-173 (263)
44 COG3638 ABC-type phosphate/pho 99.3 1.6E-12 3.6E-17 119.6 4.8 129 283-412 6-174 (258)
45 KOG2485 Conserved ATP/GTP bind 99.3 8.4E-12 1.8E-16 118.9 9.4 159 188-381 38-209 (335)
46 PRK11650 ugpC glycerol-3-phosp 99.3 5.2E-12 1.1E-16 126.4 8.2 130 283-413 6-162 (356)
47 PRK11432 fbpC ferric transport 99.3 1.1E-11 2.4E-16 123.7 8.8 132 281-413 7-164 (351)
48 TIGR03265 PhnT2 putative 2-ami 99.2 1.5E-11 3.2E-16 123.0 8.6 132 281-413 5-162 (353)
49 PRK09452 potA putrescine/sperm 99.2 1.4E-11 3E-16 124.0 8.4 132 281-413 15-172 (375)
50 PF03193 DUF258: Protein of un 99.2 7.5E-12 1.6E-16 110.6 5.6 103 270-393 8-110 (161)
51 COG1131 CcmA ABC-type multidru 99.2 4.3E-12 9.4E-17 123.7 4.2 131 282-413 6-164 (293)
52 cd03226 ABC_cobalt_CbiO_domain 99.2 5.3E-12 1.2E-16 116.6 4.4 120 293-413 13-154 (205)
53 TIGR03258 PhnT 2-aminoethylpho 99.2 2.4E-11 5.3E-16 121.7 8.9 133 280-413 5-165 (362)
54 PRK11000 maltose/maltodextrin 99.2 2.5E-11 5.4E-16 122.2 9.0 130 283-413 6-161 (369)
55 PRK10851 sulfate/thiosulfate t 99.2 9.1E-12 2E-16 124.5 5.7 129 284-413 6-164 (353)
56 cd03229 ABC_Class3 This class 99.2 3E-11 6.6E-16 109.2 7.8 113 289-413 9-128 (178)
57 cd03218 ABC_YhbG The ABC trans 99.2 3.1E-11 6.7E-16 113.5 7.8 126 287-413 7-161 (232)
58 cd03259 ABC_Carb_Solutes_like 99.2 3.3E-11 7.1E-16 111.9 7.7 124 289-413 9-158 (213)
59 cd03261 ABC_Org_Solvent_Resist 99.2 2.7E-11 5.7E-16 114.3 7.2 124 289-413 9-164 (235)
60 TIGR01186 proV glycine betaine 99.2 1.6E-11 3.5E-16 122.9 5.8 123 290-413 3-157 (363)
61 cd03265 ABC_DrrA DrrA is the A 99.2 2.8E-11 6E-16 113.0 7.0 126 287-413 7-159 (220)
62 PRK11607 potG putrescine trans 99.2 4.1E-11 8.9E-16 120.8 8.7 131 282-413 21-177 (377)
63 COG0411 LivG ABC-type branched 99.2 5.7E-12 1.2E-16 116.8 2.3 128 285-413 9-177 (250)
64 TIGR02314 ABC_MetN D-methionin 99.2 3.2E-11 7E-16 120.0 7.9 119 294-413 19-168 (343)
65 cd03216 ABC_Carb_Monos_I This 99.2 4E-11 8.6E-16 106.9 7.5 100 288-413 8-110 (163)
66 cd03235 ABC_Metallic_Cations A 99.2 1E-11 2.2E-16 115.3 3.7 120 293-413 12-160 (213)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 3.3E-11 7.2E-16 112.2 6.6 120 293-413 17-168 (218)
68 COG1119 ModF ABC-type molybden 99.2 6.5E-11 1.4E-15 109.9 8.3 132 281-413 32-199 (257)
69 PRK13537 nodulation ABC transp 99.2 5.3E-11 1.1E-15 116.9 8.1 132 281-413 8-166 (306)
70 cd03301 ABC_MalK_N The N-termi 99.2 6.4E-11 1.4E-15 109.9 8.2 125 288-413 8-158 (213)
71 cd03225 ABC_cobalt_CbiO_domain 99.2 1.7E-11 3.7E-16 113.6 4.3 120 293-413 14-162 (211)
72 TIGR02673 FtsE cell division A 99.2 5.4E-11 1.2E-15 110.5 7.6 120 293-413 15-165 (214)
73 COG1137 YhbG ABC-type (unclass 99.2 1.9E-12 4.1E-17 116.3 -2.1 131 282-413 6-167 (243)
74 cd03230 ABC_DR_subfamily_A Thi 99.2 7E-11 1.5E-15 106.3 8.0 106 293-413 13-123 (173)
75 cd03296 ABC_CysA_sulfate_impor 99.2 3E-11 6.4E-16 114.3 5.8 127 286-413 8-164 (239)
76 COG3840 ThiQ ABC-type thiamine 99.2 3.7E-11 8E-16 106.6 5.9 108 302-413 20-157 (231)
77 PRK09536 btuD corrinoid ABC tr 99.2 5.5E-11 1.2E-15 120.6 8.0 130 283-413 6-167 (402)
78 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 7E-11 1.5E-15 111.5 8.2 124 289-413 10-160 (236)
79 TIGR00960 3a0501s02 Type II (G 99.2 4.3E-11 9.4E-16 111.3 6.6 119 294-413 17-166 (216)
80 COG4559 ABC-type hemin transpo 99.2 2.9E-11 6.3E-16 109.7 5.1 110 290-403 11-151 (259)
81 TIGR02211 LolD_lipo_ex lipopro 99.2 5.3E-11 1.1E-15 111.1 7.0 119 294-413 19-169 (221)
82 PRK11247 ssuB aliphatic sulfon 99.2 3E-11 6.5E-16 115.7 5.4 132 281-413 13-161 (257)
83 cd03293 ABC_NrtD_SsuB_transpor 99.2 9.2E-11 2E-15 109.5 8.5 120 293-413 17-159 (220)
84 PRK13536 nodulation factor exp 99.2 7.2E-11 1.6E-15 117.5 8.2 132 281-413 42-200 (340)
85 COG4525 TauB ABC-type taurine 99.2 6.6E-11 1.4E-15 106.1 7.0 114 293-413 18-160 (259)
86 cd03214 ABC_Iron-Siderophores_ 99.2 4.3E-11 9.3E-16 108.4 6.0 113 290-413 9-125 (180)
87 PRK11248 tauB taurine transpor 99.2 1.2E-10 2.6E-15 111.5 9.2 126 287-413 8-156 (255)
88 PRK11300 livG leucine/isoleuci 99.1 7.4E-11 1.6E-15 112.6 7.6 129 284-413 9-181 (255)
89 TIGR03411 urea_trans_UrtD urea 99.1 8.3E-11 1.8E-15 111.4 7.8 126 287-413 9-171 (242)
90 PRK13548 hmuV hemin importer A 99.1 9.2E-11 2E-15 112.4 8.2 128 285-413 7-168 (258)
91 cd03223 ABCD_peroxisomal_ALDP 99.1 7.4E-11 1.6E-15 105.5 7.0 103 293-413 14-119 (166)
92 cd03269 ABC_putative_ATPase Th 99.1 6.3E-11 1.4E-15 109.8 6.8 125 288-413 8-156 (210)
93 TIGR01288 nodI ATP-binding ABC 99.1 8.3E-11 1.8E-15 115.4 7.9 130 283-413 7-163 (303)
94 TIGR01188 drrA daunorubicin re 99.1 3.7E-11 8E-16 117.8 5.4 122 291-413 4-152 (302)
95 cd03263 ABC_subfamily_A The AB 99.1 7.3E-11 1.6E-15 110.1 7.1 120 293-413 15-161 (220)
96 cd03294 ABC_Pro_Gly_Bertaine T 99.1 4.9E-11 1.1E-15 115.0 6.1 125 288-413 32-188 (269)
97 PRK15439 autoinducer 2 ABC tra 99.1 7.3E-11 1.6E-15 123.8 7.9 130 283-413 14-168 (510)
98 COG4148 ModC ABC-type molybdat 99.1 4.2E-11 9E-16 112.8 5.4 107 307-413 25-156 (352)
99 PRK11153 metN DL-methionine tr 99.1 7.1E-11 1.5E-15 117.8 7.3 120 293-413 18-168 (343)
100 COG4181 Predicted ABC-type tra 99.1 7.4E-11 1.6E-15 103.8 6.4 111 295-406 25-165 (228)
101 cd03219 ABC_Mj1267_LivG_branch 99.1 7E-11 1.5E-15 111.4 6.8 124 289-413 9-171 (236)
102 cd03217 ABC_FeS_Assembly ABC-t 99.1 1E-10 2.2E-15 107.7 7.6 119 289-413 9-132 (200)
103 cd03246 ABCC_Protease_Secretio 99.1 1E-10 2.2E-15 105.3 7.3 105 294-413 16-124 (173)
104 PRK11629 lolD lipoprotein tran 99.1 1E-10 2.2E-15 110.3 7.7 119 294-413 23-173 (233)
105 cd03295 ABC_OpuCA_Osmoprotecti 99.1 9.7E-11 2.1E-15 111.0 7.6 124 289-413 9-163 (242)
106 cd03222 ABC_RNaseL_inhibitor T 99.1 9E-11 2E-15 106.1 6.8 89 288-413 8-99 (177)
107 PRK11831 putative ABC transpor 99.1 1.2E-10 2.5E-15 112.4 8.1 127 286-413 13-171 (269)
108 PRK10908 cell division protein 99.1 9.4E-11 2E-15 109.6 7.2 120 293-413 15-165 (222)
109 TIGR03410 urea_trans_UrtE urea 99.1 7E-11 1.5E-15 111.0 6.2 125 288-413 8-159 (230)
110 cd03224 ABC_TM1139_LivF_branch 99.1 7.3E-11 1.6E-15 110.2 6.3 124 289-413 9-160 (222)
111 cd03266 ABC_NatA_sodium_export 99.1 8.6E-11 1.9E-15 109.5 6.7 119 294-413 19-164 (218)
112 PRK14250 phosphate ABC transpo 99.1 1.4E-10 3.1E-15 109.8 8.3 128 285-413 8-159 (241)
113 cd03264 ABC_drug_resistance_li 99.1 7.4E-11 1.6E-15 109.4 6.2 125 288-413 8-158 (211)
114 TIGR02315 ABC_phnC phosphonate 99.1 4.3E-11 9.4E-16 113.3 4.7 125 288-413 9-173 (243)
115 TIGR01189 ccmA heme ABC export 99.1 3.9E-11 8.5E-16 110.2 4.3 125 288-413 8-155 (198)
116 cd03268 ABC_BcrA_bacitracin_re 99.1 8.4E-11 1.8E-15 108.8 6.5 124 289-413 9-154 (208)
117 cd03258 ABC_MetN_methionine_tr 99.1 9.7E-11 2.1E-15 110.3 7.0 119 294-413 19-168 (233)
118 PRK13538 cytochrome c biogenes 99.1 1.4E-10 3E-15 107.1 7.9 125 288-413 9-157 (204)
119 cd03237 ABC_RNaseL_inhibitor_d 99.1 3.2E-11 7E-16 114.7 3.7 109 305-413 23-143 (246)
120 TIGR01166 cbiO cobalt transpor 99.1 2.9E-11 6.2E-16 110.4 3.1 119 294-413 6-155 (190)
121 cd03256 ABC_PhnC_transporter A 99.1 4.6E-11 1E-15 112.9 4.7 125 288-413 8-172 (241)
122 PRK13539 cytochrome c biogenes 99.1 5.9E-11 1.3E-15 109.9 5.3 128 285-413 7-155 (207)
123 COG4608 AppF ABC-type oligopep 99.1 3.6E-11 7.8E-16 113.5 3.3 105 294-412 27-136 (268)
124 TIGR03608 L_ocin_972_ABC putat 99.1 8.1E-11 1.8E-15 108.6 5.6 124 289-413 7-162 (206)
125 PRK13540 cytochrome c biogenes 99.1 1.9E-10 4.1E-15 105.9 8.1 126 287-413 8-155 (200)
126 PRK10247 putative ABC transpor 99.1 1.6E-10 3.5E-15 108.4 7.6 128 285-413 12-165 (225)
127 cd03228 ABCC_MRP_Like The MRP 99.1 1.3E-10 2.8E-15 104.4 6.7 105 294-413 16-124 (171)
128 COG4598 HisP ABC-type histidin 99.1 4.1E-11 9E-16 106.1 3.3 129 283-412 9-179 (256)
129 cd03247 ABCC_cytochrome_bd The 99.1 9.4E-11 2E-15 105.9 5.7 108 294-413 16-126 (178)
130 PRK10895 lipopolysaccharide AB 99.1 1.2E-10 2.5E-15 110.3 6.6 127 286-413 9-165 (241)
131 PRK13638 cbiO cobalt transport 99.1 6E-11 1.3E-15 114.5 4.6 128 285-413 6-164 (271)
132 PRK10253 iron-enterobactin tra 99.1 1.5E-10 3.3E-15 111.2 7.3 132 281-413 8-171 (265)
133 PRK10070 glycine betaine trans 99.1 1E-10 2.2E-15 118.5 6.3 117 296-413 44-192 (400)
134 cd03250 ABCC_MRP_domain1 Domai 99.1 1.1E-10 2.4E-15 107.7 6.0 118 294-413 19-155 (204)
135 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 1.8E-10 3.9E-15 100.6 7.0 87 289-413 9-98 (144)
136 cd03215 ABC_Carb_Monos_II This 99.1 1.2E-10 2.7E-15 105.6 6.2 112 295-413 15-132 (182)
137 PRK13637 cbiO cobalt transport 99.1 6.8E-11 1.5E-15 115.1 4.7 119 294-413 21-172 (287)
138 cd03262 ABC_HisP_GlnQ_permease 99.1 1.6E-10 3.6E-15 107.1 6.9 124 289-413 9-163 (213)
139 PRK11231 fecE iron-dicitrate t 99.1 1.7E-10 3.6E-15 110.3 7.2 128 285-413 7-166 (255)
140 PRK11614 livF leucine/isoleuci 99.1 1.4E-10 3E-15 109.6 6.4 130 283-413 8-165 (237)
141 PRK13541 cytochrome c biogenes 99.1 8.1E-11 1.8E-15 107.9 4.7 124 288-413 9-151 (195)
142 PRK13647 cbiO cobalt transport 99.1 6.1E-11 1.3E-15 114.6 4.1 127 286-413 10-166 (274)
143 TIGR00972 3a0107s01c2 phosphat 99.1 9.8E-11 2.1E-15 111.3 5.4 125 288-413 9-172 (247)
144 COG0488 Uup ATPase components 99.1 3.3E-10 7.2E-15 118.2 9.8 131 281-412 4-180 (530)
145 PRK10584 putative ABC transpor 99.1 2.3E-10 5E-15 107.3 7.8 119 294-413 24-174 (228)
146 TIGR03522 GldA_ABC_ATP gliding 99.1 1.8E-10 3.8E-15 112.9 7.2 129 284-413 6-161 (301)
147 PRK15056 manganese/iron transp 99.1 1.9E-10 4.1E-15 111.1 7.1 130 283-413 9-170 (272)
148 TIGR02142 modC_ABC molybdenum 99.1 2.7E-10 5.8E-15 114.2 8.4 124 287-413 6-159 (354)
149 cd03257 ABC_NikE_OppD_transpor 99.1 3.2E-10 7E-15 106.2 8.5 119 294-413 19-173 (228)
150 COG1129 MglA ABC-type sugar tr 99.1 1.7E-10 3.7E-15 118.1 6.9 128 283-412 11-172 (500)
151 cd03260 ABC_PstB_phosphate_tra 99.1 7.5E-11 1.6E-15 110.6 3.9 125 288-413 8-169 (227)
152 PRK13649 cbiO cobalt transport 99.1 1E-10 2.2E-15 113.4 4.9 119 294-413 21-173 (280)
153 PRK10762 D-ribose transporter 99.1 2.1E-10 4.5E-15 120.2 7.7 128 285-413 9-169 (501)
154 cd03233 ABC_PDR_domain1 The pl 99.1 3.3E-10 7.1E-15 104.6 7.9 119 292-413 19-146 (202)
155 PRK11264 putative amino-acid A 99.1 2.7E-10 5.9E-15 108.4 7.6 126 287-413 10-172 (250)
156 cd03213 ABCG_EPDR ABCG transpo 99.1 2.5E-10 5.3E-15 104.7 7.0 113 293-413 22-139 (194)
157 PRK13632 cbiO cobalt transport 99.1 3.4E-10 7.4E-15 109.2 8.3 130 283-413 10-170 (271)
158 COG4175 ProV ABC-type proline/ 99.1 8.8E-11 1.9E-15 112.3 4.1 113 301-413 48-192 (386)
159 cd03231 ABC_CcmA_heme_exporter 99.1 2.9E-10 6.2E-15 104.8 7.4 124 289-413 9-153 (201)
160 PRK09544 znuC high-affinity zi 99.1 9.8E-11 2.1E-15 111.8 4.4 127 286-413 10-148 (251)
161 cd03292 ABC_FtsE_transporter F 99.1 1.7E-10 3.8E-15 107.0 6.0 120 293-413 14-164 (214)
162 COG4619 ABC-type uncharacteriz 99.1 1.4E-10 3.1E-15 101.7 4.9 119 293-412 16-160 (223)
163 PRK13644 cbiO cobalt transport 99.1 2.8E-10 6E-15 110.1 7.5 127 286-413 7-164 (274)
164 PRK13641 cbiO cobalt transport 99.1 1.1E-10 2.3E-15 113.7 4.6 119 294-413 21-173 (287)
165 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.1 5.9E-11 1.3E-15 111.3 2.7 124 289-413 31-170 (224)
166 TIGR03740 galliderm_ABC gallid 99.1 3.2E-10 7E-15 106.1 7.6 125 288-413 8-152 (223)
167 PRK13645 cbiO cobalt transport 99.1 8.4E-11 1.8E-15 114.5 3.8 132 281-413 7-178 (289)
168 PRK13543 cytochrome c biogenes 99.1 5E-10 1.1E-14 104.2 8.7 130 283-413 14-165 (214)
169 PRK13635 cbiO cobalt transport 99.1 1.6E-10 3.5E-15 112.0 5.6 130 283-413 8-168 (279)
170 PRK10575 iron-hydroxamate tran 99.1 3E-10 6.6E-15 109.2 7.5 130 283-413 14-175 (265)
171 PRK11144 modC molybdate transp 99.1 4.1E-10 8.8E-15 112.7 8.6 126 285-413 5-156 (352)
172 PRK09493 glnQ glutamine ABC tr 99.1 3.5E-10 7.6E-15 107.0 7.7 126 287-413 8-164 (240)
173 TIGR01978 sufC FeS assembly AT 99.1 4.4E-10 9.5E-15 106.4 8.3 125 288-413 8-172 (243)
174 PRK13651 cobalt transporter AT 99.1 1.4E-10 3E-15 113.9 4.9 119 294-413 21-193 (305)
175 PRK11701 phnK phosphonate C-P 99.0 2.7E-10 5.9E-15 109.0 6.8 128 285-413 11-179 (258)
176 PRK10938 putative molybdenum t 99.0 2.3E-10 4.9E-15 119.5 6.8 129 284-413 7-163 (490)
177 cd03290 ABCC_SUR1_N The SUR do 99.0 1.7E-10 3.8E-15 107.5 5.3 129 284-413 4-168 (218)
178 PRK11819 putative ABC transpor 99.0 1.5E-10 3.2E-15 122.8 5.4 129 284-413 10-191 (556)
179 COG1117 PstB ABC-type phosphat 99.0 1.1E-10 2.5E-15 106.0 3.8 126 285-412 12-176 (253)
180 PRK13547 hmuV hemin importer A 99.0 2.4E-10 5.1E-15 110.4 6.2 125 288-413 9-182 (272)
181 PRK13639 cbiO cobalt transport 99.0 1.4E-10 3E-15 112.2 4.4 120 293-413 15-165 (275)
182 PRK13549 xylose transporter AT 99.0 3.3E-10 7.1E-15 118.8 7.6 129 284-413 9-171 (506)
183 PRK11124 artP arginine transpo 99.0 3.6E-10 7.9E-15 107.0 7.2 128 285-413 7-169 (242)
184 PRK09700 D-allose transporter 99.0 3.1E-10 6.8E-15 119.1 7.4 129 284-413 9-173 (510)
185 cd03298 ABC_ThiQ_thiamine_tran 99.0 5.9E-10 1.3E-14 103.3 8.4 115 298-413 16-156 (211)
186 PRK14247 phosphate ABC transpo 99.0 6.1E-10 1.3E-14 106.0 8.6 128 285-413 8-174 (250)
187 PF00005 ABC_tran: ABC transpo 99.0 4.6E-11 1E-15 102.8 0.8 110 301-413 5-136 (137)
188 TIGR03415 ABC_choXWV_ATP choli 99.0 1.8E-10 4E-15 116.0 5.1 123 290-413 34-192 (382)
189 PRK11288 araG L-arabinose tran 99.0 4.2E-10 9.2E-15 117.8 8.1 128 285-413 9-168 (501)
190 PRK13652 cbiO cobalt transport 99.0 2.1E-10 4.6E-15 111.0 5.4 128 285-413 8-165 (277)
191 COG3845 ABC-type uncharacteriz 99.0 2.4E-10 5.1E-15 115.2 5.8 131 281-412 5-167 (501)
192 cd03245 ABCC_bacteriocin_expor 99.0 2.4E-10 5.2E-15 106.6 5.3 130 283-413 5-168 (220)
193 cd03300 ABC_PotA_N PotA is an 99.0 8E-10 1.7E-14 104.1 8.7 125 288-413 8-158 (232)
194 PF10662 PduV-EutP: Ethanolami 99.0 3.5E-10 7.5E-15 97.9 5.7 124 151-299 13-141 (143)
195 TIGR03873 F420-0_ABC_ATP propo 99.0 5.2E-10 1.1E-14 107.0 7.5 127 286-413 7-165 (256)
196 cd03267 ABC_NatA_like Similar 99.0 3.3E-10 7.3E-15 107.0 6.0 123 290-413 31-181 (236)
197 cd03251 ABCC_MsbA MsbA is an e 99.0 3.8E-10 8.3E-15 106.2 6.3 119 294-413 16-166 (234)
198 TIGR03005 ectoine_ehuA ectoine 99.0 1.6E-10 3.4E-15 110.2 3.7 125 288-413 8-174 (252)
199 PRK13636 cbiO cobalt transport 99.0 2E-10 4.4E-15 111.5 4.5 128 285-413 10-169 (283)
200 PRK13650 cbiO cobalt transport 99.0 4.9E-10 1.1E-14 108.6 7.2 119 294-413 21-168 (279)
201 PRK13648 cbiO cobalt transport 99.0 6.4E-10 1.4E-14 107.2 7.9 131 282-413 9-170 (269)
202 PRK10744 pstB phosphate transp 99.0 2.8E-10 6.1E-15 109.1 5.3 132 281-413 14-184 (260)
203 TIGR02323 CP_lyasePhnK phospho 99.0 3.7E-10 8.1E-15 107.7 6.1 128 285-413 8-176 (253)
204 COG4604 CeuD ABC-type enteroch 99.0 2.9E-11 6.2E-16 108.6 -1.5 126 285-413 6-163 (252)
205 PRK10619 histidine/lysine/argi 99.0 6.2E-10 1.3E-14 106.5 7.6 128 285-413 10-180 (257)
206 PRK14242 phosphate transporter 99.0 2.3E-10 5.1E-15 109.1 4.7 131 282-413 8-177 (253)
207 COG1122 CbiO ABC-type cobalt t 99.0 2E-10 4.3E-15 108.2 4.1 120 293-413 17-166 (235)
208 TIGR02868 CydC thiol reductant 99.0 2.1E-10 4.5E-15 120.9 4.6 131 281-412 335-497 (529)
209 COG4133 CcmA ABC-type transpor 99.0 2.1E-10 4.5E-15 102.4 3.8 120 293-413 15-158 (209)
210 PRK14235 phosphate transporter 99.0 3E-10 6.5E-15 109.4 5.2 132 281-413 20-191 (267)
211 PRK15112 antimicrobial peptide 99.0 8E-10 1.7E-14 106.4 8.2 119 294-413 27-177 (267)
212 cd03369 ABCC_NFT1 Domain 2 of 99.0 6.6E-10 1.4E-14 102.7 7.2 128 281-413 7-153 (207)
213 TIGR02982 heterocyst_DevA ABC 99.0 2.4E-10 5.2E-15 106.7 4.2 120 293-413 18-169 (220)
214 cd03254 ABCC_Glucan_exporter_l 99.0 4.4E-10 9.5E-15 105.5 5.9 130 283-413 5-167 (229)
215 PRK15177 Vi polysaccharide exp 99.0 1.5E-10 3.2E-15 107.8 2.7 117 296-413 3-132 (213)
216 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 4E-10 8.7E-15 119.4 6.2 129 284-413 326-471 (552)
217 PRK14267 phosphate ABC transpo 99.0 9.9E-10 2.1E-14 104.8 8.3 129 284-413 8-177 (253)
218 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 3.3E-10 7.2E-15 120.0 5.5 128 285-413 9-189 (552)
219 PRK14270 phosphate ABC transpo 99.0 5.2E-10 1.1E-14 106.6 6.3 130 283-413 7-175 (251)
220 PRK13643 cbiO cobalt transport 99.0 3.6E-10 7.9E-15 110.0 5.2 119 294-413 20-172 (288)
221 PRK14248 phosphate ABC transpo 99.0 3.5E-10 7.6E-15 108.9 5.1 131 282-413 23-192 (268)
222 PRK14269 phosphate ABC transpo 99.0 5E-10 1.1E-14 106.4 6.0 127 286-413 8-170 (246)
223 PRK10982 galactose/methyl gala 99.0 5.1E-10 1.1E-14 116.9 6.5 124 289-413 7-162 (491)
224 PRK14241 phosphate transporter 99.0 1.1E-09 2.4E-14 104.8 8.3 130 283-413 7-176 (258)
225 PRK13631 cbiO cobalt transport 99.0 3.2E-10 6.9E-15 112.0 4.6 119 294-413 40-204 (320)
226 CHL00131 ycf16 sulfate ABC tra 99.0 1.5E-09 3.2E-14 103.4 9.0 128 285-413 12-179 (252)
227 TIGR01277 thiQ thiamine ABC tr 99.0 4E-10 8.8E-15 104.7 4.8 116 297-413 15-156 (213)
228 PRK10771 thiQ thiamine transpo 99.0 1.6E-09 3.6E-14 101.9 9.0 115 298-413 17-157 (232)
229 PRK11819 putative ABC transpor 99.0 4.6E-10 9.9E-15 119.0 5.9 130 283-413 327-473 (556)
230 TIGR02769 nickel_nikE nickel i 99.0 1.1E-09 2.4E-14 105.3 8.0 120 293-413 24-178 (265)
231 PRK13646 cbiO cobalt transport 99.0 7E-10 1.5E-14 107.9 6.6 119 294-413 21-173 (286)
232 PRK14259 phosphate ABC transpo 99.0 4.3E-10 9.2E-15 108.4 5.1 131 282-413 15-182 (269)
233 PRK13633 cobalt transporter AT 99.0 1.1E-09 2.4E-14 106.2 7.9 120 293-413 23-172 (280)
234 TIGR01184 ntrCD nitrate transp 99.0 8.6E-10 1.9E-14 103.8 6.9 113 301-413 5-142 (230)
235 PRK11022 dppD dipeptide transp 99.0 9.6E-10 2.1E-14 108.9 7.6 119 294-413 21-181 (326)
236 PRK14268 phosphate ABC transpo 99.0 4E-10 8.7E-15 107.9 4.7 130 283-413 15-182 (258)
237 cd03232 ABC_PDR_domain2 The pl 99.0 5.9E-10 1.3E-14 102.0 5.6 112 293-413 20-136 (192)
238 PRK13634 cbiO cobalt transport 99.0 8.4E-10 1.8E-14 107.6 7.0 119 294-413 21-173 (290)
239 cd03297 ABC_ModC_molybdenum_tr 99.0 1.2E-09 2.5E-14 101.6 7.7 125 285-413 5-159 (214)
240 TIGR02770 nickel_nikD nickel i 99.0 7.9E-10 1.7E-14 104.0 6.6 113 301-413 6-153 (230)
241 COG4555 NatA ABC-type Na+ tran 99.0 2E-10 4.4E-15 103.5 2.4 129 284-413 5-161 (245)
242 PRK14273 phosphate ABC transpo 99.0 4.5E-10 9.7E-15 107.2 4.8 129 284-413 11-178 (254)
243 PRK11147 ABC transporter ATPas 99.0 4.9E-10 1.1E-14 120.6 5.7 129 283-413 6-184 (635)
244 PRK09580 sufC cysteine desulfu 99.0 1.5E-09 3.2E-14 103.1 8.4 53 285-338 6-61 (248)
245 PRK10636 putative ABC transpor 99.0 1.6E-09 3.5E-14 116.6 9.6 130 283-413 4-177 (638)
246 cd03248 ABCC_TAP TAP, the Tran 99.0 5.7E-10 1.2E-14 104.5 5.4 132 281-413 12-178 (226)
247 TIGR02633 xylG D-xylose ABC tr 99.0 9.4E-10 2E-14 115.2 7.5 126 287-413 8-169 (500)
248 TIGR02324 CP_lyasePhnL phospho 99.0 1.6E-09 3.5E-14 101.3 8.4 119 294-413 22-177 (224)
249 PRK13640 cbiO cobalt transport 99.0 5.1E-10 1.1E-14 108.6 5.1 129 284-413 9-171 (282)
250 PRK14254 phosphate ABC transpo 99.0 3.9E-10 8.5E-15 109.6 4.2 131 282-413 41-208 (285)
251 PRK10261 glutathione transport 99.0 3.7E-10 8E-15 121.3 4.4 119 294-413 30-196 (623)
252 PRK13409 putative ATPase RIL; 99.0 3.1E-10 6.8E-15 120.7 3.7 124 288-413 81-240 (590)
253 cd03244 ABCC_MRP_domain2 Domai 99.0 8.5E-10 1.8E-14 103.0 6.1 119 294-413 18-167 (221)
254 PRK15064 ABC transporter ATP-b 99.0 4.7E-10 1E-14 118.3 4.9 131 282-413 321-466 (530)
255 TIGR00968 3a0106s01 sulfate AB 99.0 1.6E-09 3.5E-14 102.4 8.1 124 289-413 9-158 (237)
256 PRK09473 oppD oligopeptide tra 99.0 1.2E-09 2.6E-14 108.4 7.4 120 293-413 29-189 (330)
257 PRK10418 nikD nickel transport 99.0 2.7E-09 6E-14 101.9 9.6 120 293-413 16-168 (254)
258 COG2274 SunT ABC-type bacterio 99.0 8.1E-10 1.8E-14 119.0 6.6 132 280-412 471-636 (709)
259 PRK15079 oligopeptide ABC tran 99.0 1.3E-09 2.8E-14 108.2 7.6 119 294-413 35-189 (331)
260 COG1123 ATPase components of v 99.0 6.9E-10 1.5E-14 114.4 5.7 118 294-413 305-457 (539)
261 PRK11147 ABC transporter ATPas 99.0 4.9E-10 1.1E-14 120.6 4.7 130 283-413 322-468 (635)
262 cd03253 ABCC_ATM1_transporter 99.0 9E-10 1.9E-14 103.8 6.0 120 293-413 14-165 (236)
263 TIGR03269 met_CoM_red_A2 methy 98.9 3.5E-10 7.5E-15 119.0 3.4 125 288-413 8-196 (520)
264 PRK14275 phosphate ABC transpo 98.9 6.2E-10 1.3E-14 108.3 5.0 130 283-413 42-210 (286)
265 PRK15093 antimicrobial peptide 98.9 1.1E-09 2.3E-14 108.8 6.7 122 291-413 18-186 (330)
266 cd03252 ABCC_Hemolysin The ABC 98.9 1.2E-09 2.6E-14 103.1 6.7 120 293-413 15-166 (237)
267 PRK14249 phosphate ABC transpo 98.9 7.3E-10 1.6E-14 105.6 5.3 129 284-413 8-175 (251)
268 PRK09700 D-allose transporter 98.9 8.4E-10 1.8E-14 115.9 6.1 119 294-413 277-437 (510)
269 PRK15064 ABC transporter ATP-b 98.9 2.8E-09 6E-14 112.5 10.0 127 286-413 7-183 (530)
270 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 9.8E-10 2.1E-14 103.8 5.9 119 294-413 17-167 (238)
271 PRK13642 cbiO cobalt transport 98.9 2.1E-09 4.6E-14 104.1 8.3 118 295-413 22-168 (277)
272 PRK11308 dppF dipeptide transp 98.9 1.5E-09 3.3E-14 107.5 7.4 119 294-413 29-182 (327)
273 PRK10636 putative ABC transpor 98.9 7.6E-10 1.7E-14 119.1 5.6 131 282-413 314-458 (638)
274 cd03299 ABC_ModC_like Archeal 98.9 2.5E-09 5.3E-14 101.0 8.3 118 295-413 14-157 (235)
275 PRK14256 phosphate ABC transpo 98.9 3E-09 6.5E-14 101.4 9.0 131 282-413 6-176 (252)
276 PRK09984 phosphonate/organopho 98.9 7.7E-10 1.7E-14 106.1 4.9 127 286-413 10-180 (262)
277 PRK14271 phosphate ABC transpo 98.9 2.2E-09 4.7E-14 104.0 8.1 131 282-413 23-191 (276)
278 PRK10419 nikE nickel transport 98.9 7E-10 1.5E-14 106.9 4.6 120 293-413 25-179 (268)
279 cd03289 ABCC_CFTR2 The CFTR su 98.9 6.6E-10 1.4E-14 107.5 4.3 131 281-413 3-166 (275)
280 PRK13546 teichoic acids export 98.9 5.2E-10 1.1E-14 107.6 3.4 117 295-413 39-171 (264)
281 PRK13409 putative ATPase RIL; 98.9 7.3E-10 1.6E-14 117.9 4.8 116 296-413 355-481 (590)
282 PRK14272 phosphate ABC transpo 98.9 2.5E-09 5.5E-14 101.8 7.8 128 285-413 9-176 (252)
283 PRK14246 phosphate ABC transpo 98.9 1.2E-09 2.5E-14 104.7 5.5 129 284-413 14-181 (257)
284 PRK14244 phosphate ABC transpo 98.9 8.3E-10 1.8E-14 105.2 4.4 125 288-413 13-177 (251)
285 PRK14274 phosphate ABC transpo 98.9 1.3E-09 2.8E-14 104.4 5.7 132 281-413 13-183 (259)
286 PRK14236 phosphate transporter 98.9 1.1E-09 2.4E-14 105.8 5.1 130 283-413 28-196 (272)
287 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 1.2E-09 2.5E-14 118.8 5.8 133 280-413 451-616 (686)
288 PRK10261 glutathione transport 98.9 2E-09 4.4E-14 115.5 7.4 119 294-413 338-491 (623)
289 PRK14240 phosphate transporter 98.9 9.9E-10 2.2E-14 104.5 4.4 130 283-413 6-174 (250)
290 PRK14251 phosphate ABC transpo 98.9 3.4E-09 7.3E-14 101.0 8.0 130 283-413 7-175 (251)
291 PRK14237 phosphate transporter 98.9 4.1E-09 8.8E-14 101.5 8.6 131 282-413 22-191 (267)
292 PRK14262 phosphate ABC transpo 98.9 1.2E-09 2.5E-14 104.1 4.7 128 285-413 8-174 (250)
293 COG4988 CydD ABC-type transpor 98.9 9.5E-10 2.1E-14 113.2 4.3 126 285-412 327-483 (559)
294 PRK11288 araG L-arabinose tran 98.9 1.3E-09 2.9E-14 114.1 5.3 119 294-413 267-424 (501)
295 PRK11174 cysteine/glutathione 98.9 1.2E-09 2.5E-14 116.7 5.0 119 293-413 363-513 (588)
296 PRK13545 tagH teichoic acids e 98.9 1.2E-09 2.6E-14 113.0 4.9 119 294-413 38-171 (549)
297 PLN03073 ABC transporter F fam 98.9 2.2E-09 4.7E-14 116.6 6.8 130 283-413 511-655 (718)
298 PRK14253 phosphate ABC transpo 98.9 3.2E-09 6.9E-14 101.0 7.2 126 287-413 10-173 (249)
299 TIGR03269 met_CoM_red_A2 methy 98.9 8.5E-10 1.8E-14 116.1 3.5 120 293-413 297-455 (520)
300 PRK13549 xylose transporter AT 98.9 1.5E-09 3.2E-14 113.9 5.2 120 293-413 275-433 (506)
301 cd03234 ABCG_White The White s 98.9 1.3E-09 2.8E-14 102.3 4.3 121 292-413 19-171 (226)
302 PRK14245 phosphate ABC transpo 98.9 1.8E-09 3.9E-14 102.8 5.3 130 283-413 6-174 (250)
303 PRK14252 phosphate ABC transpo 98.9 1.3E-09 2.7E-14 104.9 4.3 132 281-413 17-189 (265)
304 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 1.3E-09 2.8E-14 118.9 4.8 132 281-413 478-643 (710)
305 cd03288 ABCC_SUR2 The SUR doma 98.9 4.1E-09 8.9E-14 100.9 7.7 132 281-413 20-184 (257)
306 PRK14239 phosphate transporter 98.9 5.8E-09 1.3E-13 99.4 8.7 130 283-413 8-176 (252)
307 PRK15134 microcin C ABC transp 98.9 3.3E-09 7.1E-14 111.9 7.6 120 293-413 22-184 (529)
308 PRK14243 phosphate transporter 98.9 2.1E-09 4.6E-14 103.3 5.6 130 283-413 13-179 (264)
309 PRK14265 phosphate ABC transpo 98.9 4.6E-09 1E-13 101.5 7.9 131 282-413 22-189 (274)
310 cd03291 ABCC_CFTR1 The CFTR su 98.9 1.5E-09 3.3E-14 105.3 4.5 119 293-413 50-187 (282)
311 TIGR02633 xylG D-xylose ABC tr 98.9 2.2E-09 4.7E-14 112.5 6.0 120 293-413 273-431 (500)
312 COG4161 ArtP ABC-type arginine 98.9 2.4E-09 5.1E-14 93.5 5.1 125 287-412 9-168 (242)
313 TIGR03771 anch_rpt_ABC anchore 98.9 1.1E-09 2.4E-14 102.6 3.4 109 305-413 4-141 (223)
314 COG4152 ABC-type uncharacteriz 98.9 6.2E-10 1.3E-14 103.1 1.5 130 283-413 5-158 (300)
315 TIGR02857 CydD thiol reductant 98.9 3E-09 6.5E-14 112.1 6.8 132 280-412 320-485 (529)
316 PRK14258 phosphate ABC transpo 98.9 2.5E-09 5.3E-14 102.6 5.7 132 281-413 8-178 (261)
317 cd03238 ABC_UvrA The excision 98.9 4.1E-09 8.9E-14 95.2 6.6 102 294-413 9-117 (176)
318 PRK14264 phosphate ABC transpo 98.9 1.8E-09 3.9E-14 106.0 4.6 132 281-413 46-228 (305)
319 cd00267 ABC_ATPase ABC (ATP-bi 98.9 6.3E-09 1.4E-13 91.9 7.6 93 294-413 13-108 (157)
320 PRK11176 lipid transporter ATP 98.9 1.9E-09 4.1E-14 114.9 5.0 132 281-413 342-508 (582)
321 PRK14257 phosphate ABC transpo 98.9 2.1E-09 4.5E-14 106.6 4.7 132 281-413 81-253 (329)
322 PRK13657 cyclic beta-1,2-gluca 98.9 2.2E-09 4.7E-14 114.7 5.3 132 281-413 335-499 (588)
323 PRK14260 phosphate ABC transpo 98.8 2.2E-09 4.8E-14 102.8 4.6 130 283-413 10-178 (259)
324 PRK10938 putative molybdenum t 98.8 3.6E-09 7.7E-14 110.6 6.6 132 281-413 261-429 (490)
325 TIGR00954 3a01203 Peroxysomal 98.8 2.7E-09 5.9E-14 115.2 5.8 132 281-413 452-610 (659)
326 PRK14238 phosphate transporter 98.8 2.3E-09 5E-14 103.5 4.7 131 282-413 26-195 (271)
327 TIGR01193 bacteriocin_ABC ABC- 98.8 1.7E-09 3.6E-14 118.0 4.1 132 281-413 474-639 (708)
328 COG1132 MdlB ABC-type multidru 98.8 4.6E-09 1E-13 111.7 7.4 132 280-412 328-492 (567)
329 PRK10762 D-ribose transporter 98.8 1.8E-09 4E-14 113.1 4.2 118 295-413 267-423 (501)
330 PRK14263 phosphate ABC transpo 98.8 2.8E-09 6E-14 102.4 5.0 125 288-413 16-177 (261)
331 PRK14266 phosphate ABC transpo 98.8 3.5E-09 7.6E-14 100.8 5.7 127 286-413 9-174 (250)
332 TIGR03375 type_I_sec_LssB type 98.8 2.4E-09 5.1E-14 116.6 5.0 133 280-413 463-629 (694)
333 COG1159 Era GTPase [General fu 98.8 1.4E-08 3E-13 97.0 9.6 109 177-306 66-174 (298)
334 PLN03232 ABC transporter C fam 98.8 2.9E-09 6.3E-14 124.3 5.9 132 281-413 615-768 (1495)
335 PRK14261 phosphate ABC transpo 98.8 3.5E-09 7.5E-14 101.0 5.4 128 285-413 11-177 (253)
336 PRK11160 cysteine/glutathione 98.8 3E-09 6.6E-14 113.2 5.5 132 281-413 339-503 (574)
337 cd03236 ABC_RNaseL_inhibitor_d 98.8 5.1E-09 1.1E-13 100.2 6.5 118 294-413 15-167 (255)
338 TIGR01187 potA spermidine/putr 98.8 3.7E-09 8E-14 104.7 5.5 103 311-413 1-128 (325)
339 TIGR00958 3a01208 Conjugate Tr 98.8 4.1E-09 8.9E-14 114.9 6.2 132 281-413 479-645 (711)
340 PRK14255 phosphate ABC transpo 98.8 1.3E-08 2.8E-13 97.0 8.8 129 284-413 9-176 (252)
341 PRK10982 galactose/methyl gala 98.8 3.6E-09 7.8E-14 110.6 5.4 119 294-413 262-419 (491)
342 KOG0058 Peptide exporter, ABC 98.8 2.3E-09 4.9E-14 112.6 3.9 131 280-411 465-630 (716)
343 TIGR02204 MsbA_rel ABC transpo 98.8 4.6E-09 1E-13 111.8 6.2 132 281-413 338-504 (576)
344 PRK03695 vitamin B12-transport 98.8 4.4E-09 9.5E-14 100.2 5.4 117 295-413 11-161 (248)
345 TIGR02203 MsbA_lipidA lipid A 98.8 3.9E-09 8.4E-14 112.2 5.6 132 281-413 331-497 (571)
346 TIGR01194 cyc_pep_trnsptr cycl 98.8 5.4E-09 1.2E-13 110.9 6.3 132 281-413 338-498 (555)
347 TIGR01192 chvA glucan exporter 98.8 1.1E-08 2.4E-13 109.2 8.4 132 281-413 335-499 (585)
348 PRK15134 microcin C ABC transp 98.8 2.1E-09 4.5E-14 113.4 2.6 119 293-413 299-453 (529)
349 PRK10790 putative multidrug tr 98.8 7E-09 1.5E-13 110.9 6.7 132 281-413 341-504 (592)
350 PRK10522 multidrug transporter 98.8 5.7E-09 1.2E-13 110.5 5.9 131 281-413 323-477 (547)
351 TIGR01842 type_I_sec_PrtD type 98.8 1.4E-08 3.1E-13 107.4 8.4 132 281-413 317-482 (544)
352 COG1123 ATPase components of v 98.8 6.9E-09 1.5E-13 107.1 5.7 122 290-412 19-181 (539)
353 PRK15439 autoinducer 2 ABC tra 98.8 5.4E-09 1.2E-13 109.7 4.8 118 295-413 278-431 (510)
354 PF02421 FeoB_N: Ferrous iron 98.8 9.9E-09 2.2E-13 90.6 5.5 65 308-392 2-67 (156)
355 PRK10789 putative multidrug tr 98.8 8.3E-09 1.8E-13 109.8 5.9 120 293-413 328-479 (569)
356 TIGR01846 type_I_sec_HlyB type 98.7 9.4E-09 2E-13 111.9 6.1 132 281-413 456-621 (694)
357 PLN03130 ABC transporter C fam 98.7 8.2E-09 1.8E-13 121.0 5.8 131 281-413 615-768 (1622)
358 COG0444 DppD ABC-type dipeptid 98.7 1.5E-08 3.2E-13 98.0 6.4 125 287-412 12-180 (316)
359 TIGR01257 rim_protein retinal- 98.7 1.9E-08 4.1E-13 118.5 7.9 132 281-413 929-1089(2272)
360 TIGR01257 rim_protein retinal- 98.7 1.8E-08 3.9E-13 118.7 7.5 132 281-413 1938-2098(2272)
361 TIGR00957 MRP_assoc_pro multi 98.7 2.4E-08 5.3E-13 116.9 7.2 131 281-413 637-788 (1522)
362 TIGR01271 CFTR_protein cystic 98.7 9.8E-09 2.1E-13 119.8 3.3 118 294-413 440-576 (1490)
363 KOG0055 Multidrug/pheromone ex 98.7 4.1E-08 8.9E-13 108.9 7.6 126 280-412 350-516 (1228)
364 COG4167 SapF ABC-type antimicr 98.6 2.7E-08 5.8E-13 88.6 4.8 104 308-411 41-175 (267)
365 PLN03232 ABC transporter C fam 98.6 3.4E-08 7.3E-13 115.5 7.0 132 280-412 1234-1398(1495)
366 PRK10535 macrolide transporter 98.6 5.7E-08 1.2E-12 104.9 7.6 119 294-413 22-172 (648)
367 PTZ00243 ABC transporter; Prov 98.6 1.9E-08 4E-13 117.8 4.1 119 293-413 673-810 (1560)
368 KOG0054 Multidrug resistance-a 98.6 4.9E-08 1.1E-12 110.4 7.2 131 281-413 519-671 (1381)
369 KOG0057 Mitochondrial Fe/S clu 98.6 4.1E-08 9E-13 100.2 5.9 132 279-412 350-514 (591)
370 PLN03130 ABC transporter C fam 98.6 4.7E-08 1E-12 114.7 7.2 132 280-412 1237-1401(1622)
371 PLN03211 ABC transporter G-25; 98.6 4.3E-08 9.3E-13 105.8 6.0 124 289-413 77-234 (659)
372 PTZ00243 ABC transporter; Prov 98.6 3.4E-08 7.5E-13 115.6 5.1 132 280-412 1308-1473(1560)
373 PTZ00265 multidrug resistance 98.6 3.2E-08 6.9E-13 115.1 4.7 59 280-339 382-444 (1466)
374 PTZ00265 multidrug resistance 98.6 4.4E-08 9.6E-13 113.9 5.6 52 280-332 1165-1220(1466)
375 COG4618 ArpD ABC-type protease 98.6 3.3E-08 7.1E-13 100.2 3.7 120 292-412 348-499 (580)
376 COG0488 Uup ATPase components 98.6 1.2E-07 2.6E-12 99.2 7.7 129 283-412 324-466 (530)
377 COG4778 PhnL ABC-type phosphon 98.6 1.6E-08 3.5E-13 89.0 0.9 43 295-338 26-69 (235)
378 TIGR00957 MRP_assoc_pro multi 98.5 7.4E-08 1.6E-12 112.9 6.2 132 280-412 1284-1448(1522)
379 COG4586 ABC-type uncharacteriz 98.5 8.9E-08 1.9E-12 90.3 5.5 113 295-412 39-183 (325)
380 COG1160 Predicted GTPases [Gen 98.5 2.4E-07 5.2E-12 93.2 8.9 97 189-302 253-349 (444)
381 PLN03073 ABC transporter F fam 98.5 2.3E-07 5E-12 100.9 8.9 51 279-330 176-227 (718)
382 TIGR00955 3a01204 The Eye Pigm 98.5 4E-08 8.6E-13 105.5 3.0 121 292-413 37-194 (617)
383 COG4987 CydC ABC-type transpor 98.5 7.9E-08 1.7E-12 98.1 4.8 118 294-412 352-501 (573)
384 COG4136 ABC-type uncharacteriz 98.5 2.4E-07 5.3E-12 80.1 6.9 125 288-413 10-162 (213)
385 PF00009 GTP_EFTU: Elongation 98.5 1.6E-07 3.4E-12 85.5 6.2 98 190-303 87-186 (188)
386 COG1101 PhnK ABC-type uncharac 98.5 6E-08 1.3E-12 88.6 3.0 117 294-411 20-174 (263)
387 TIGR00436 era GTP-binding prot 98.5 5.1E-07 1.1E-11 87.1 9.7 103 181-306 64-166 (270)
388 COG1159 Era GTPase [General fu 98.5 5.5E-08 1.2E-12 93.0 2.7 61 307-382 7-68 (298)
389 COG0396 sufC Cysteine desulfur 98.5 5.1E-08 1.1E-12 89.9 2.2 119 293-412 17-171 (251)
390 COG1134 TagH ABC-type polysacc 98.5 4.5E-08 9.7E-13 91.2 1.7 119 293-412 40-174 (249)
391 KOG0056 Heavy metal exporter H 98.5 1.1E-07 2.3E-12 95.9 4.0 131 280-411 537-700 (790)
392 COG1245 Predicted ATPase, RNas 98.5 1.4E-07 3.1E-12 94.4 4.7 106 305-412 365-482 (591)
393 COG4172 ABC-type uncharacteriz 98.4 1.9E-07 4E-12 92.4 4.7 115 296-412 303-453 (534)
394 KOG0055 Multidrug/pheromone ex 98.4 7.4E-08 1.6E-12 106.9 1.7 130 280-411 987-1152(1228)
395 PF01926 MMR_HSR1: 50S ribosom 98.4 3.1E-07 6.8E-12 76.6 4.8 58 308-380 1-59 (116)
396 COG0486 ThdF Predicted GTPase 98.4 2.7E-07 5.8E-12 93.2 5.0 60 306-380 217-277 (454)
397 TIGR00956 3a01205 Pleiotropic 98.4 2E-07 4.3E-12 108.3 4.6 121 292-413 775-930 (1394)
398 TIGR01271 CFTR_protein cystic 98.4 2.7E-07 5.8E-12 108.0 5.5 131 280-412 1217-1380(1490)
399 TIGR02528 EutP ethanolamine ut 98.4 1.3E-06 2.7E-11 75.2 8.3 83 192-299 58-140 (142)
400 COG0218 Predicted GTPase [Gene 98.4 4.1E-07 8.8E-12 82.6 5.0 58 307-380 25-82 (200)
401 COG4107 PhnK ABC-type phosphon 98.4 5.4E-07 1.2E-11 79.8 5.3 50 288-338 14-64 (258)
402 COG4674 Uncharacterized ABC-ty 98.4 7.6E-08 1.7E-12 86.7 -0.2 125 287-412 12-174 (249)
403 cd03278 ABC_SMC_barmotin Barmo 98.3 1E-06 2.2E-11 81.1 6.9 107 305-413 21-145 (197)
404 cd03272 ABC_SMC3_euk Eukaryoti 98.3 8.6E-07 1.9E-11 83.9 6.6 32 382-413 153-190 (243)
405 PRK09866 hypothetical protein; 98.3 2E-06 4.4E-11 90.3 9.6 100 188-301 250-350 (741)
406 PRK15494 era GTPase Era; Provi 98.3 1.9E-06 4.1E-11 85.9 9.0 102 182-306 117-218 (339)
407 COG4178 ABC-type uncharacteriz 98.3 7.1E-07 1.5E-11 93.6 5.7 126 284-411 398-541 (604)
408 PRK00089 era GTPase Era; Revie 98.3 2.7E-06 5.9E-11 82.8 9.4 105 181-306 69-173 (292)
409 PLN03140 ABC transporter G fam 98.3 2.6E-07 5.6E-12 107.4 2.3 120 293-413 893-1047(1470)
410 COG4172 ABC-type uncharacteriz 98.3 7.2E-07 1.6E-11 88.3 4.9 124 288-412 18-184 (534)
411 PLN03140 ABC transporter G fam 98.3 1.7E-07 3.8E-12 108.8 -0.0 120 293-413 178-364 (1470)
412 cd03274 ABC_SMC4_euk Eukaryoti 98.3 2.2E-06 4.7E-11 79.8 7.2 32 382-413 122-159 (212)
413 cd01894 EngA1 EngA1 subfamily. 98.3 2.8E-06 6.1E-11 73.6 7.5 90 186-301 66-155 (157)
414 TIGR00956 3a01205 Pleiotropic 98.2 3E-07 6.5E-12 106.8 0.8 120 293-413 74-237 (1394)
415 cd01895 EngA2 EngA2 subfamily. 98.2 1.1E-05 2.4E-10 70.8 9.9 92 192-300 80-171 (174)
416 cd00881 GTP_translation_factor 98.2 8.8E-06 1.9E-10 72.9 9.4 96 192-303 81-186 (189)
417 KOG1191 Mitochondrial GTPase [ 98.2 1.8E-06 3.8E-11 87.4 5.0 71 306-391 268-340 (531)
418 cd03270 ABC_UvrA_I The excisio 98.2 2.1E-06 4.4E-11 80.7 4.7 42 372-413 120-167 (226)
419 COG1084 Predicted GTPase [Gene 98.2 3.9E-06 8.5E-11 81.2 6.7 87 307-411 169-257 (346)
420 TIGR03594 GTPase_EngA ribosome 98.1 8.2E-06 1.8E-10 83.8 9.5 97 189-303 247-343 (429)
421 TIGR00436 era GTP-binding prot 98.1 2E-06 4.4E-11 82.9 4.7 59 307-380 1-60 (270)
422 COG4917 EutP Ethanolamine util 98.1 4.2E-06 9.1E-11 70.0 5.8 124 152-301 14-143 (148)
423 TIGR02729 Obg_CgtA Obg family 98.1 1.1E-05 2.5E-10 80.0 9.7 102 186-302 225-327 (329)
424 cd01884 EF_Tu EF-Tu subfamily. 98.1 1.3E-05 2.8E-10 73.7 9.2 92 188-293 80-172 (195)
425 KOG0061 Transporter, ABC super 98.1 3.5E-06 7.5E-11 90.3 6.1 121 291-412 41-197 (613)
426 KOG0054 Multidrug resistance-a 98.1 6.2E-06 1.3E-10 93.8 8.3 131 280-411 1138-1301(1381)
427 cd03279 ABC_sbcCD SbcCD and ot 98.1 5.6E-06 1.2E-10 77.0 6.7 32 382-413 118-161 (213)
428 cd01853 Toc34_like Toc34-like 98.1 4E-06 8.7E-11 79.9 5.7 60 306-380 31-91 (249)
429 KOG0060 Long-chain acyl-CoA tr 98.1 6.8E-06 1.5E-10 84.7 7.2 127 284-411 439-596 (659)
430 PRK15467 ethanolamine utilizat 98.1 1.1E-05 2.3E-10 71.5 7.7 89 190-303 58-146 (158)
431 cd03240 ABC_Rad50 The catalyti 98.1 3.5E-06 7.6E-11 77.9 4.7 32 382-413 110-149 (204)
432 COG1245 Predicted ATPase, RNas 98.1 1.1E-06 2.4E-11 88.2 1.3 109 304-412 97-240 (591)
433 cd04165 GTPBP1_like GTPBP1-lik 98.1 2.1E-05 4.5E-10 73.9 9.9 89 195-299 108-218 (224)
434 cd04171 SelB SelB subfamily. 98.1 1.3E-05 2.9E-10 70.0 8.0 95 190-300 68-162 (164)
435 PRK00093 GTP-binding protein D 98.1 1.2E-05 2.7E-10 82.7 9.0 95 189-302 248-342 (435)
436 KOG0927 Predicted transporter 98.1 3.1E-06 6.8E-11 86.6 4.4 119 294-413 404-537 (614)
437 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 4E-06 8.6E-11 76.8 4.5 60 308-381 2-62 (196)
438 cd01898 Obg Obg subfamily. Th 98.1 1.1E-05 2.4E-10 71.2 7.2 96 191-301 73-168 (170)
439 PRK12299 obgE GTPase CgtA; Rev 98.1 1.9E-05 4.2E-10 78.5 9.6 102 186-303 226-327 (335)
440 KOG0066 eIF2-interacting prote 98.1 2.5E-06 5.5E-11 85.1 3.2 126 286-412 592-731 (807)
441 cd01888 eIF2_gamma eIF2-gamma 98.1 1.6E-05 3.4E-10 73.4 8.3 101 188-304 98-199 (203)
442 COG2262 HflX GTPases [General 98.0 2.3E-05 5E-10 78.1 9.9 105 190-318 265-372 (411)
443 COG4615 PvdE ABC-type sideroph 98.0 2.2E-06 4.7E-11 84.7 2.6 44 301-344 343-387 (546)
444 KOG0062 ATPase component of AB 98.0 3.6E-06 7.7E-11 85.7 4.2 127 279-412 79-225 (582)
445 cd03273 ABC_SMC2_euk Eukaryoti 98.0 1.2E-05 2.7E-10 76.6 7.0 31 383-413 162-198 (251)
446 COG0370 FeoB Fe2+ transport sy 98.0 9.1E-06 2E-10 85.6 6.4 66 308-393 5-71 (653)
447 cd04163 Era Era subfamily. Er 98.0 4.5E-05 9.7E-10 66.2 9.8 92 189-301 75-166 (168)
448 cd03276 ABC_SMC6_euk Eukaryoti 98.0 1.3E-05 2.8E-10 73.8 6.4 33 381-413 103-141 (198)
449 PRK12298 obgE GTPase CgtA; Rev 98.0 6.7E-06 1.5E-10 83.4 4.9 57 308-380 161-219 (390)
450 cd01900 YchF YchF subfamily. 98.0 4.7E-06 1E-10 80.4 3.6 55 310-380 2-74 (274)
451 PRK12298 obgE GTPase CgtA; Rev 98.0 3E-05 6.6E-10 78.6 9.5 107 186-305 227-334 (390)
452 cd01889 SelB_euk SelB subfamil 98.0 2.8E-05 6E-10 70.8 8.2 100 188-303 83-185 (192)
453 cd01890 LepA LepA subfamily. 98.0 3.8E-05 8.3E-10 68.5 9.0 91 191-302 85-175 (179)
454 KOG0063 RNAse L inhibitor, ABC 98.0 4.2E-06 9.1E-11 83.4 2.7 98 308-412 368-483 (592)
455 PRK03003 GTP-binding protein D 97.9 2.7E-05 5.9E-10 81.1 8.4 94 191-303 288-381 (472)
456 COG5265 ATM1 ABC-type transpor 97.9 1.2E-05 2.5E-10 80.3 5.2 71 279-349 261-332 (497)
457 cd03239 ABC_SMC_head The struc 97.9 3.8E-05 8.2E-10 69.5 8.1 96 309-413 25-126 (178)
458 PTZ00258 GTP-binding protein; 97.9 1E-05 2.3E-10 81.5 4.9 58 307-380 22-97 (390)
459 cd01879 FeoB Ferrous iron tran 97.9 4.2E-05 9.2E-10 66.4 8.1 83 195-302 73-155 (158)
460 COG0486 ThdF Predicted GTPase 97.9 2.2E-05 4.7E-10 79.6 6.8 95 182-304 282-376 (454)
461 PRK12296 obgE GTPase CgtA; Rev 97.9 4.1E-05 9E-10 79.5 9.1 104 186-303 226-339 (500)
462 cd04104 p47_IIGP_like p47 (47- 97.9 1.5E-05 3.2E-10 73.2 5.3 62 308-380 3-64 (197)
463 KOG0059 Lipid exporter ABCA1 a 97.9 1E-05 2.3E-10 90.3 4.7 133 280-413 564-726 (885)
464 COG0218 Predicted GTPase [Gene 97.9 7.8E-05 1.7E-09 67.8 9.4 88 197-303 107-196 (200)
465 cd01898 Obg Obg subfamily. Th 97.9 1.2E-05 2.6E-10 71.0 4.1 56 308-379 2-59 (170)
466 PRK09601 GTP-binding protein Y 97.9 1.1E-05 2.3E-10 80.6 4.1 57 308-380 4-78 (364)
467 PRK00089 era GTPase Era; Revie 97.9 1.3E-05 2.9E-10 78.0 4.6 59 307-380 6-65 (292)
468 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 7.9E-05 1.7E-09 65.5 9.0 93 193-302 70-164 (168)
469 cd00880 Era_like Era (E. coli 97.8 0.00011 2.3E-09 62.8 9.1 91 191-300 70-160 (163)
470 cd04160 Arfrp1 Arfrp1 subfamil 97.8 6.2E-05 1.3E-09 66.3 7.6 96 192-299 69-164 (167)
471 COG0536 Obg Predicted GTPase [ 97.8 7.6E-05 1.7E-09 72.8 8.4 106 186-303 227-332 (369)
472 cd01862 Rab7 Rab7 subfamily. 97.8 8.7E-05 1.9E-09 65.5 8.3 98 192-303 68-166 (172)
473 PRK09518 bifunctional cytidyla 97.8 6E-05 1.3E-09 82.4 8.6 96 190-304 526-621 (712)
474 cd01883 EF1_alpha Eukaryotic e 97.8 0.00016 3.5E-09 67.4 10.3 94 190-294 94-195 (219)
475 PRK04213 GTP-binding protein; 97.8 2.8E-05 6.1E-10 71.1 4.9 54 307-379 10-63 (201)
476 TIGR03598 GTPase_YsxC ribosome 97.8 3.8E-05 8.3E-10 69.1 5.7 58 307-380 19-76 (179)
477 PRK00454 engB GTP-binding prot 97.8 3.7E-05 8E-10 69.7 5.6 57 307-379 25-81 (196)
478 cd04166 CysN_ATPS CysN_ATPS su 97.8 0.00015 3.3E-09 67.1 9.8 92 191-297 95-187 (208)
479 TIGR03156 GTP_HflX GTP-binding 97.8 4.7E-05 1E-09 76.3 6.8 87 190-301 262-349 (351)
480 KOG1489 Predicted GTP-binding 97.8 0.00013 2.9E-09 70.4 9.4 108 177-300 255-363 (366)
481 KOG1423 Ras-like GTPase ERA [C 97.8 5.3E-05 1.1E-09 72.8 6.6 105 188-306 147-273 (379)
482 cd04164 trmE TrmE (MnmE, ThdF, 97.8 3E-05 6.5E-10 67.0 4.7 58 308-380 3-61 (157)
483 cd01897 NOG NOG1 is a nucleola 97.8 0.00011 2.3E-09 64.8 8.3 86 197-301 80-165 (168)
484 KOG0064 Peroxisomal long-chain 97.8 2.6E-05 5.6E-10 79.8 4.8 107 295-402 497-627 (728)
485 COG4138 BtuD ABC-type cobalami 97.8 4.4E-06 9.6E-11 74.2 -0.7 96 306-402 24-140 (248)
486 PRK09554 feoB ferrous iron tra 97.8 4.2E-05 9.2E-10 83.8 6.7 70 308-393 5-75 (772)
487 PF04548 AIG1: AIG1 family; I 97.8 2.7E-05 5.8E-10 72.5 4.4 25 308-332 2-26 (212)
488 TIGR00991 3a0901s02IAP34 GTP-b 97.7 3.7E-05 8.1E-10 75.0 5.4 25 306-330 38-62 (313)
489 TIGR03598 GTPase_YsxC ribosome 97.7 0.00013 2.9E-09 65.5 8.7 81 195-293 99-179 (179)
490 cd04151 Arl1 Arl1 subfamily. 97.7 4E-05 8.8E-10 67.1 5.2 91 192-299 62-155 (158)
491 PRK04213 GTP-binding protein; 97.7 0.00014 3.1E-09 66.4 9.0 89 193-303 87-191 (201)
492 PRK10512 selenocysteinyl-tRNA- 97.7 0.00013 2.9E-09 78.2 9.7 99 190-304 68-166 (614)
493 TIGR00475 selB selenocysteine- 97.7 0.00013 2.8E-09 77.9 9.6 98 190-302 67-164 (581)
494 cd01876 YihA_EngB The YihA (En 97.7 4.6E-05 9.9E-10 66.4 5.2 54 308-379 1-56 (170)
495 cd04107 Rab32_Rab38 Rab38/Rab3 97.7 0.00011 2.5E-09 67.2 8.0 97 192-302 69-166 (201)
496 PTZ00327 eukaryotic translatio 97.7 0.00011 2.4E-09 76.0 8.6 100 189-304 133-233 (460)
497 TIGR00450 mnmE_trmE_thdF tRNA 97.7 4.7E-05 1E-09 78.6 5.8 59 307-380 204-263 (442)
498 PRK12299 obgE GTPase CgtA; Rev 97.7 4.3E-05 9.4E-10 76.0 5.4 57 308-380 160-218 (335)
499 cd03271 ABC_UvrA_II The excisi 97.7 4E-05 8.7E-10 73.5 4.9 41 373-413 153-200 (261)
500 cd03275 ABC_SMC1_euk Eukaryoti 97.7 6E-05 1.3E-09 71.7 6.1 31 383-413 151-187 (247)
No 1
>PRK13796 GTPase YqeH; Provisional
Probab=100.00 E-value=3.1e-45 Score=366.21 Aligned_cols=254 Identities=34% Similarity=0.641 Sum_probs=202.4
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||++.. .+ ++. .+...++|||||+
T Consensus 1 ~~C~GCG~~lq~~~~~~~Gy~p~~-----~~------------------~~~---------------~~~~~~~C~RC~~ 42 (365)
T PRK13796 1 LRCIGCGAAIQTEDKNKPGYAPAS-----AL------------------KKG---------------LETEEVYCQRCFR 42 (365)
T ss_pred CcccCCCceeEcCCCCCCCCCCHH-----Hh------------------hcc---------------cccCCeEchhhhh
Confidence 379999999999999999999641 11 110 0123689999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
|+|||++.++. +++++|.+.+ .+..+..++|++|||+.|+.+++.+.+.+++. + .
T Consensus 43 l~hy~~~~~~~----~~~~~~~~~l----~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~------------~-----k 97 (365)
T PRK13796 43 LKHYNEIQDVS----LTDDDFLKLL----NGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG------------N-----N 97 (365)
T ss_pred hhccCcccCCC----CCHHHHHHHH----HhhcccCcEEEEEEECccCCCchhHHHHHHhC------------C-----C
Confidence 99999988755 4566775422 22233455999999999999888777766543 1 2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
++++|+||+||++++...+.+.+|++.+.+..|. .+.+++.+||++++|+++|++.|.++. .++.+++||.+||||||
T Consensus 98 pviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~-~~~~v~~vSAk~g~gI~eL~~~I~~~~-~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 98 PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGL-RPVDVVLISAQKGHGIDELLEAIEKYR-EGRDVYVVGVTNVGKST 175 (365)
T ss_pred CEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCC-CcCcEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEcCCCCcHHH
Confidence 8999999999998765667788898887776663 234799999999999999999997664 34689999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|||+|++... | ....++++.+||||++.+.++ ++++..++||||+...+++.+.|+.++++.+.+.++
T Consensus 176 LiN~L~~~~~---~-------~~~~~~~s~~pGTT~~~~~~~--l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~ 243 (365)
T PRK13796 176 LINRIIKEIT---G-------EKDVITTSRFPGTTLDKIEIP--LDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKE 243 (365)
T ss_pred HHHHHHhhcc---C-------ccceEEecCCCCccceeEEEE--cCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcc
Confidence 9999996441 2 124578899999999998874 556679999999998889999999999999999999
Q ss_pred hcCCccccCCC
Q 015085 402 LKPRTYRIKVS 412 (413)
Q Consensus 402 l~~~~~~l~~~ 412 (413)
++|++|+|++.
T Consensus 244 i~p~~~~l~~g 254 (365)
T PRK13796 244 IKPKTYQLNEE 254 (365)
T ss_pred cCceEEEECCC
Confidence 99999999863
No 2
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=100.00 E-value=1.5e-43 Score=353.69 Aligned_cols=248 Identities=36% Similarity=0.698 Sum_probs=202.2
Q ss_pred CCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhhhh
Q 015085 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALR 163 (413)
Q Consensus 84 C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~l~ 163 (413)
|+||||.||++||++|||++... ++ .+.++|||||+|+
T Consensus 1 C~GCG~~lq~~d~~~~Gy~p~~~-----------------------~~-------------------~~~~~C~RC~~l~ 38 (360)
T TIGR03597 1 CIGCGAAIQTTDPKKPGYTPKSA-----------------------LE-------------------KEEVYCQRCFRLK 38 (360)
T ss_pred CCCCCceeEcCCCCCCCCCchHH-----------------------cC-------------------cCCeeecchhhhh
Confidence 99999999999999999996420 11 1268999999999
Q ss_pred hcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcE
Q 015085 164 HYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRV 243 (413)
Q Consensus 164 hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~v 243 (413)
|||++.+.. +++++|.+ .+......+++|++|+|+.|+++++.+.+.+++.. .++
T Consensus 39 hy~~~~~~~----~~~e~f~~----~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~-----------------~pi 93 (360)
T TIGR03597 39 HYNEIQDVE----LNDDDFLN----LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGG-----------------NPV 93 (360)
T ss_pred ccCccccCC----CCHHHHHH----HHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCC-----------------CCE
Confidence 999987764 35566654 23344567899999999999999988888776531 289
Q ss_pred EEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHH
Q 015085 244 VLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323 (413)
Q Consensus 244 ilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLi 323 (413)
++|+||+||+++....+.+.+|++++++..|. ...+++.+||++++|+++|++.+.++. .+.+++++|.+||||||||
T Consensus 94 ilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~-~~~~i~~vSAk~g~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 94 LLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL-KPVDIILVSAKKGNGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred EEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC-CcCcEEEecCCCCCCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHH
Confidence 99999999998766667888998877777664 234689999999999999999996654 3458999999999999999
Q ss_pred HHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhhc
Q 015085 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELK 403 (413)
Q Consensus 324 n~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~ 403 (413)
|+|++..... ....+++.+||||++.+.+. +.....++||||+...+++.+.|+..+++.+.+.+.++
T Consensus 172 N~l~~~~~~~----------~~~~~~s~~pgtT~~~~~~~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~ 239 (360)
T TIGR03597 172 NKLLKQNNGD----------KDVITTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIK 239 (360)
T ss_pred HHHHhhccCC----------cceeeecCCCCeEeeEEEEE--eCCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccC
Confidence 9999754211 12467899999999988774 55567899999999888999999999999999999999
Q ss_pred CCccccCCC
Q 015085 404 PRTYRIKVS 412 (413)
Q Consensus 404 ~~~~~l~~~ 412 (413)
+++|++++.
T Consensus 240 ~~~~~l~~~ 248 (360)
T TIGR03597 240 PKTYQLNPN 248 (360)
T ss_pred ceEEEeCCC
Confidence 999999863
No 3
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.96 E-value=7.2e-29 Score=226.69 Aligned_cols=189 Identities=40% Similarity=0.707 Sum_probs=136.6
Q ss_pred chhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcC
Q 015085 156 CARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEG 235 (413)
Q Consensus 156 C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~ 235 (413)
|+|||+|+|||++.... ++..++ +...+...++.+|+|++|+|+.+++.++...+.... .+
T Consensus 1 C~rC~~l~~~~~~~~~~----~~~~~~---~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~------------~~ 61 (190)
T cd01855 1 CQRCFRLKHYNKIDPVE----IPDEDF---ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFG------------GN 61 (190)
T ss_pred CcchhhhhccCcccccc----CChHHH---HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhc------------CC
Confidence 99999999999988654 334443 234455677889999999999998766555542111 12
Q ss_pred CCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH-HHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcC
Q 015085 236 KSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR-AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGA 314 (413)
Q Consensus 236 k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~-~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ 314 (413)
.++++|+||+|+++.......+..|.+.. .+..+. ....++.+||++++|+++|++.|.++...++.++++|.
T Consensus 62 -----~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 62 -----NPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL-KPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred -----CcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC-CcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 38999999999986544444555665211 122221 22468999999999999999999888777778999999
Q ss_pred CCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 315 QNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 315 ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
+|+|||||||+|.+...... ......+++..||||++...+. +.....++||||+
T Consensus 136 ~nvGKStliN~l~~~~~~~~-------~~~~~~~~~~~~gtT~~~~~~~--~~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKK-------KLKDLLTTSPIPGTTLDLIKIP--LGNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhccccc-------ccccccccCCCCCeeeeeEEEe--cCCCCEEEeCcCC
Confidence 99999999999997542111 0112356788899999988774 4446899999996
No 4
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.95 E-value=9e-30 Score=254.35 Aligned_cols=337 Identities=36% Similarity=0.474 Sum_probs=248.1
Q ss_pred cccccCCCCCCCCC--CCCCCCCCCC--ccccccC--CCCCccccCCcchhhhhhh--ccccccccchhhhhhhccCCce
Q 015085 65 SLALTRDGNYDEAT--PKLTVCPGCG--VLMQDTN--PKHPGYFIRPSQNLNKVRK--SHLVHVANESEFSNSLKKGGLV 136 (413)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~~C~GCG--~~lQ~~d--p~~pGY~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
-+|+.+.+.+++.. ...+.|+||| ..+|..+ +..||||.++..+...... ..+.+.+++.+.......+...
T Consensus 57 ~~P~~~~~~~~d~d~~~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~ 136 (572)
T KOG1249|consen 57 YLPLEIFLRLSERDGFLAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVG 136 (572)
T ss_pred CCchHhhccccccccccccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhccc
Confidence 37777888888777 5778999999 8888888 9999999875432211111 1223332222211111111100
Q ss_pred ec---cccccchhhhcCCCCccchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCc
Q 015085 137 VF---EAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSF 213 (413)
Q Consensus 137 ~~---~~~~~~~~~~~~~~~~~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~ 213 (413)
.. ..-..-+....+..+.+|+||+.+.||+.+.....++..|+++|.+...-++........+|+.|+|..||.+++
T Consensus 137 ~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf 216 (572)
T KOG1249|consen 137 SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDF 216 (572)
T ss_pred CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeeccCce
Confidence 00 000011123345568999999999999999999999989999998776666666666778999999999999998
Q ss_pred hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcc
Q 015085 214 PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLK 293 (413)
Q Consensus 214 ~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~ 293 (413)
.......+.+....|...+...++.+.+.++.+.|++|.++...+..++..|.....+..+..+.-.++.+++++.+|..
T Consensus 217 ~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r 296 (572)
T KOG1249|consen 217 YLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGER 296 (572)
T ss_pred eeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHH
Confidence 76655555443333333333334345568999999999998877777888887766666665445568889999999999
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLF 373 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~li 373 (413)
+++....-.....+.++.||.+++||+++||.|...+. | ..-.++.++.||||++.+++...+....+++
T Consensus 297 ~l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~---a-------~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~Y 366 (572)
T KOG1249|consen 297 DLLALETGDAGKAGPVAAVGRTFAGSEELINAMAKELH---A-------DVEALAEEPVPGTTLGIRRIEGIFKRGAWLY 366 (572)
T ss_pred HHHHhhhhccccccchHHhhhhhhccchhhhhhhhhhc---c-------chhccccCCCCcccccceeeeccccccceee
Confidence 88877756666777788899999999999999995542 2 3356778899999999998876677789999
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHhhhhcCCccccCC
Q 015085 374 DTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKV 411 (413)
Q Consensus 374 DtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~ 411 (413)
||||+.+++++...|..+|+..|.+++.|+|+||.++|
T Consensus 367 DTPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~vkp 404 (572)
T KOG1249|consen 367 DTPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRVKP 404 (572)
T ss_pred cCCCccChhhhhhhccHHHhhhcCcccccccceEEcCC
Confidence 99999999999999999999999999999999999986
No 5
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=8.2e-24 Score=208.24 Aligned_cols=204 Identities=30% Similarity=0.399 Sum_probs=156.8
Q ss_pred cchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhc
Q 015085 155 VCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKE 234 (413)
Q Consensus 155 ~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~ 234 (413)
.|+||++++||+.+.+. |.+.. ...+.+.+.+...|+|+.|+|++|+.++..+.+.+++...
T Consensus 1 ~~~~~~~~~~~~~i~~~------~g~~~--k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k---------- 62 (322)
T COG1161 1 QCQRCFRLKHYNKIQWF------PGHMK--KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEK---------- 62 (322)
T ss_pred CchhhhHHHhcccccCC------CCchH--HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccC----------
Confidence 49999999999987763 33322 2335667788899999999999999999999998887632
Q ss_pred CCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhc--------cchhhhccc-
Q 015085 235 GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI--------DDVVDLAGK- 305 (413)
Q Consensus 235 ~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll--------~~I~~l~~~- 305 (413)
+.++|+||+||++. ...++|.+.+.+..+ ...+.+++..+.+...+. +.+..+...
T Consensus 63 -------~~i~vlNK~DL~~~----~~~~~W~~~~~~~~~----~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 127 (322)
T COG1161 63 -------PKLLVLNKADLAPK----EVTKKWKKYFKKEEG----IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKG 127 (322)
T ss_pred -------CcEEEEehhhcCCH----HHHHHHHHHHHhcCC----CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcC
Confidence 66999999999976 458899988776544 246778888888877666 444333332
Q ss_pred ----CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 306 ----RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 306 ----~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
...+++||.+|||||||||+|++.. .++++..||+|.+...+ .+.....|+||||+..+
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~---------------~~~~s~~PG~Tk~~q~i--~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKK---------------VAKTSNRPGTTKGIQWI--KLDDGIYLLDTPGIIPP 190 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhccc---------------ceeeCCCCceecceEEE--EcCCCeEEecCCCcCCC
Confidence 1468889999999999999999543 36788999999998877 46777899999999976
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCccccCC
Q 015085 382 NQITTRLTREEQKLVNINKELKPRTYRIKV 411 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~ 411 (413)
+...+ ......+.+..+|+..+|+++.
T Consensus 191 ~~~~~---~~v~~~l~~~~~Ik~~~~~~~~ 217 (322)
T COG1161 191 KFDDD---ELVLLKLAPKGEIKDPVLPADE 217 (322)
T ss_pred Cccch---HHHhhccccccccCccccChHH
Confidence 65544 4456667788888888887653
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.88 E-value=4.9e-22 Score=176.08 Aligned_cols=151 Identities=28% Similarity=0.378 Sum_probs=112.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
++++++++|+|++|+|+.++..+.+..+.+++... ..+ .|+++|+||+|++++ +.+..|+..+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~--------~~~-----~p~ilVlNKiDl~~~----~~~~~~~~~~ 64 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE--------KPH-----KHLIFVLNKCDLVPT----WVTARWVKIL 64 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc--------cCC-----CCEEEEEEchhcCCH----HHHHHHHHHH
Confidence 35677889999999999998777777777777531 012 389999999999854 3456676654
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc-----cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-----KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~-----~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v 344 (413)
.+.. .+ .++.+||++++|.++|++.+.++.. .+-.++++|.+|+|||||||+|.+..
T Consensus 65 ~~~~---~~-~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~-------------- 126 (157)
T cd01858 65 SKEY---PT-IAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK-------------- 126 (157)
T ss_pred hcCC---cE-EEEEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC--------------
Confidence 4322 22 3678999999999999998866531 22246679999999999999999532
Q ss_pred ccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 345 SHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 345 ~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
..+++..||+|+....+. +.....++||||+
T Consensus 127 -~~~~~~~~g~T~~~~~~~--~~~~~~liDtPGi 157 (157)
T cd01858 127 -VCKVAPIPGETKVWQYIT--LMKRIYLIDCPGV 157 (157)
T ss_pred -ceeeCCCCCeeEeEEEEE--cCCCEEEEECcCC
Confidence 345678899999876553 5566899999996
No 7
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=195.04 Aligned_cols=246 Identities=25% Similarity=0.419 Sum_probs=173.1
Q ss_pred ccccccCCCCCCCCCCCCCcccccCCCCCCCCCC-CCCCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccch
Q 015085 46 SSSSFSSQPTNTAPPPLSSSLALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANES 124 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~ 124 (413)
+.+|+.+.+.-| .+.|+.++..| +...|.|||+.+++++.+.|||++.. .|.. .++..
T Consensus 12 ~~~f~~~~pe~p-----------~~~~~~~~~~p~~~v~c~~~~~~~~c~s~s~~~~~P~~-----~~~~-----~~d~d 70 (572)
T KOG1249|consen 12 LETFSTGQPEEP-----------NRQGTPDPRLPASSVNCSGCGAELHCQSASSPGYLPLE-----IFLR-----LSERD 70 (572)
T ss_pred hhhhcccCCCCC-----------ccCCCCCcCCCCccceecCCCceEEEeccCCCCCCchH-----hhcc-----ccccc
Confidence 455555555555 56689999998 88999999999999999999998542 2221 01100
Q ss_pred hhhhhhccCCceeccccccchhhhcCCCCccchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEE
Q 015085 125 EFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVV 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~Vv 204 (413)
+ .-...+|+||+.|.||+...++.+ .|. .+.+.+. ++.++..++.+|+
T Consensus 71 ~------------------------~~~~~~cpgc~~l~~~~~~~~~~v---~~~-~y~k~~~----~~~~~~~~~~~vv 118 (572)
T KOG1249|consen 71 G------------------------FLAAIVCPGCGFLEHMRAALAVPV---VPG-EYKKEKS----EKQENPALARKVV 118 (572)
T ss_pred c------------------------ccccccCCcchHHHHhhhhccCcc---Chh-hhhhhhh----hhhhcccceEEee
Confidence 0 123589999999999998665432 222 3333222 2233357889999
Q ss_pred eCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH----HHHHHcCCC----
Q 015085 205 DAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR----QRAREDGIS---- 276 (413)
Q Consensus 205 D~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~----~~~~~~g~~---- 276 (413)
|..|++.+.++.+...+.. +..++++||+|+++.+...-....... .+.++.+..
T Consensus 119 d~~d~p~~i~p~~~~~v~~-----------------~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p 181 (572)
T KOG1249|consen 119 DLSDEPCSIDPLLTNDVGS-----------------PRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNP 181 (572)
T ss_pred ecccCccccccchhhcccC-----------------CceEeeccccccccccccchHHHHHHhhcccceeecccccCCCc
Confidence 9999999888777776642 247999999999987543222211111 011111111
Q ss_pred --ccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 277 --KITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 277 --~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
.|..+..++++++||+++|+-.|.+....+|+++.+|++|+||||++|+|+..... ++ ...+.+...|++.|||
T Consensus 182 ~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c-~~---~~p~lVd~aT~~dwpg 257 (572)
T KOG1249|consen 182 DFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNALLESDLC-SV---NAPKLVDRATISDWPG 257 (572)
T ss_pred ccchhhhhhhhhhhcccHHHHHHHhhheeeccCceeeeeecccchhhHHHHHhhhccc-cc---cccceeeeeecccCCc
Confidence 24567789999999999999999888888999999999999999999999987744 33 2234667889999999
Q ss_pred CeeeeEeeccc
Q 015085 355 TTLGIVRVEGV 365 (413)
Q Consensus 355 tT~~~i~~~~~ 365 (413)
||+...+++..
T Consensus 258 Ttlsllkfpv~ 268 (572)
T KOG1249|consen 258 TTLSLLKFPVL 268 (572)
T ss_pred cccchhhCccc
Confidence 99999887643
No 8
>PRK12289 GTPase RsgA; Reviewed
Probab=99.81 E-value=1.4e-19 Score=179.67 Aligned_cols=188 Identities=24% Similarity=0.352 Sum_probs=122.9
Q ss_pred CCccchhhhhhhhcCcccc----ccc------------ccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchH
Q 015085 152 KPVVCARCHALRHYGKVKD----VTV------------ENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPR 215 (413)
Q Consensus 152 ~~~~C~RC~~l~hy~~~~~----~~i------------~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~ 215 (413)
..+.|.+|.++++++.... +.+ +.++|+.... ...++..+|+|++|+|+.++... ..
T Consensus 35 ~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L------~R~~~aNvD~vLlV~d~~~p~~~-~~ 107 (352)
T PRK12289 35 SLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTEL------DRPPVANADQILLVFALAEPPLD-PW 107 (352)
T ss_pred eEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccce------echhhhcCCEEEEEEECCCCCCC-HH
Confidence 3578999999998775321 111 1223333322 11246779999999999875432 23
Q ss_pred HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchh
Q 015085 216 KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSL 295 (413)
Q Consensus 216 ~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~L 295 (413)
.+.+++... +..++ ++++|+||+||+.. ..+..|... ++..| ..++.+||.++.|+++|
T Consensus 108 ~LdR~L~~a-------~~~~i-----p~ILVlNK~DLv~~----~~~~~~~~~-~~~~g----~~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 108 QLSRFLVKA-------ESTGL-----EIVLCLNKADLVSP----TEQQQWQDR-LQQWG----YQPLFISVETGIGLEAL 166 (352)
T ss_pred HHHHHHHHH-------HHCCC-----CEEEEEEchhcCCh----HHHHHHHHH-HHhcC----CeEEEEEcCCCCCHHHH
Confidence 556666532 11233 89999999999743 345666543 34444 36899999999999999
Q ss_pred ccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccc
Q 015085 296 IDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDT 375 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDt 375 (413)
++.+.. ..++++|++|||||||||.|++......|.+......++| ||.+...+ .++.+..++||
T Consensus 167 ~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrH--------TT~~~~l~--~l~~g~~liDT 231 (352)
T PRK12289 167 LEQLRN-----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRH--------TTRHVELF--ELPNGGLLADT 231 (352)
T ss_pred hhhhcc-----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCC--------cCceeEEE--ECCCCcEEEeC
Confidence 988732 2356699999999999999998776555644433333333 55544333 35555799999
Q ss_pred ccccCCC
Q 015085 376 PGLLHPN 382 (413)
Q Consensus 376 pGl~~~~ 382 (413)
||+....
T Consensus 232 PG~~~~~ 238 (352)
T PRK12289 232 PGFNQPD 238 (352)
T ss_pred CCccccc
Confidence 9997644
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=8.2e-20 Score=181.90 Aligned_cols=165 Identities=26% Similarity=0.308 Sum_probs=129.3
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
+.|.+.|.+++..++.+||+|++|||+.......+..+.++|... + +|+++|+||+|-....
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~-----kpviLvvNK~D~~~~e--- 128 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS----------K-----KPVILVVNKIDNLKAE--- 128 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEEcccCchhh---
Confidence 468888999999999999999999999998888899999988742 2 3999999999976221
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc-c-----c-----CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA-G-----K-----RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~-~-----~-----~g~~~~vG~ng~GKSTLin~L~g 328 (413)
....+| -.. ++.+++.+||.+|.|+.+|++.+...+ . . ..++.++|.+|+|||||+|+|+|
T Consensus 129 ~~~~ef-----ysl---G~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilg 200 (444)
T COG1160 129 ELAYEF-----YSL---GFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG 200 (444)
T ss_pred hhHHHH-----Hhc---CCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhcc
Confidence 111111 123 457899999999999999999987764 1 1 24677899999999999999996
Q ss_pred cCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccCCCCCC
Q 015085 329 SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 329 ~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~~~~~~ 385 (413)
.. .+-+++.+|||++.+...+..++ ...++||.|+.+..++.
T Consensus 201 ee---------------R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 201 EE---------------RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred Cc---------------eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 43 34568899999999988765544 46899999998654443
No 10
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.81 E-value=3.1e-19 Score=157.77 Aligned_cols=141 Identities=30% Similarity=0.451 Sum_probs=102.0
Q ss_pred cEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 198 SVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 198 dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
|+|++|+|+.++..+....+. ..+.. .+ .|+++|+||+|++++ +.+..|+..+.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~----------~~-----~p~IiVlNK~Dl~~~----~~~~~~~~~~~~~~--- 58 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE----------KG-----KKLILVLNKADLVPK----EVLRKWLAYLRHSY--- 58 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc----------CC-----CCEEEEEechhcCCH----HHHHHHHHHHHhhC---
Confidence 789999999988777666555 23221 12 389999999999753 44567764443222
Q ss_pred ccceEEEeEEEeecCcchhccchhhh-------------cccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc
Q 015085 277 KITKLHFVSAVKNWGLKSLIDDVVDL-------------AGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (413)
Q Consensus 277 ~~~~V~~vSa~~~~Gi~~Ll~~I~~l-------------~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~ 343 (413)
...++.+||.++.|+++|.+.+.+. ......++++|.+|+|||||||+|++...
T Consensus 59 -~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~------------ 125 (155)
T cd01849 59 -PTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK------------ 125 (155)
T ss_pred -CceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc------------
Confidence 2468999999999999998877432 22334577799999999999999996431
Q ss_pred cccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 344 v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
..++..+|||.+...+. +.....++||||+
T Consensus 126 ---~~~~~~~~~t~~~~~~~--~~~~~~liDtPG~ 155 (155)
T cd01849 126 ---LKVGNVPGTTTSQQEVK--LDNKIKLLDTPGI 155 (155)
T ss_pred ---ccccCCCCcccceEEEE--ecCCEEEEECCCC
Confidence 22466789998876653 4456899999996
No 11
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.80 E-value=7e-19 Score=171.02 Aligned_cols=175 Identities=25% Similarity=0.309 Sum_probs=123.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
..+.+.+.++.+|+||+|+|++++..+....+.+++. + +|+++|+||+||.+. ...+.|
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~------------~-----kp~iiVlNK~DL~~~----~~~~~~ 72 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG------------N-----KPRLLILNKSDLADP----EVTKKW 72 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC------------C-----CCEEEEEEchhcCCH----HHHHHH
Confidence 3466788899999999999999887776666666543 2 289999999999743 345667
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-------------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-------------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+.+. ..+ ..++.+|+.++.|++.|++.+.++... ...++++|.+|||||||||+|.+..
T Consensus 73 ~~~~~-~~~----~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-- 145 (287)
T PRK09563 73 IEYFE-EQG----IKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-- 145 (287)
T ss_pred HHHHH-HcC----CeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC--
Confidence 65442 222 357899999999999988877655321 1247779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhhcCCcc
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTY 407 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~~ 407 (413)
...++..||+|.+...+ .+.....++||||+..+. ..+.....++++...++...+
T Consensus 146 -------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtPGi~~~~----~~~~~~~~~l~~~~~i~~~~~ 201 (287)
T PRK09563 146 -------------IAKTGNRPGVTKAQQWI--KLGKGLELLDTPGILWPK----LEDQEVGLKLALTGAIKDEAL 201 (287)
T ss_pred -------------ccccCCCCCeEEEEEEE--EeCCcEEEEECCCcCCCC----CCcHHHHHHHHHhCCcchhhc
Confidence 23557789999987654 355678999999997543 122223334555555554433
No 12
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.79 E-value=1.4e-18 Score=168.08 Aligned_cols=153 Identities=27% Similarity=0.348 Sum_probs=114.6
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
..+++.+.++.+|+|++|+|++++..+.+..+.+++. + +|+++|+||+||.+. .....|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~------------~-----kp~IiVlNK~DL~~~----~~~~~~ 69 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG------------N-----KPRLIVLNKADLADP----AVTKQW 69 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC------------C-----CCEEEEEEccccCCH----HHHHHH
Confidence 4467788899999999999999887777777766553 2 289999999999743 335667
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-------------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-------------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+.. +..+ ..++.+|+.++.|++.|++.+.++... ...++++|.+|+|||||||.|.+..
T Consensus 70 ~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~-- 142 (276)
T TIGR03596 70 LKYF-EEKG----IKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKK-- 142 (276)
T ss_pred HHHH-HHcC----CeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCC--
Confidence 6543 2222 368899999999999998888655432 1247779999999999999998532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
...++..||+|+....+ .+.....++||||+..+
T Consensus 143 -------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 143 -------------VAKVGNRPGVTKGQQWI--KLSDGLELLDTPGILWP 176 (276)
T ss_pred -------------ccccCCCCCeecceEEE--EeCCCEEEEECCCcccC
Confidence 23446789999887655 34556899999999754
No 13
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.78 E-value=3.3e-18 Score=148.91 Aligned_cols=138 Identities=26% Similarity=0.425 Sum_probs=100.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+.++++.+|+|++|+|+.++....+..+.+++... ..+ +|+++|+||+|++++ ..+..|.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~-----k~~iivlNK~DL~~~----~~~~~~~~ 65 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPR-----KKNILLLNKADLLTE----EQRKAWAE 65 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCC-----CcEEEEEechhcCCH----HHHHHHHH
Confidence 4566788899999999999998777777777776531 012 389999999999753 33445544
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~ 347 (413)
. ++..+ ..++.+||.++.+ .++++|.+|+|||||+|+|++.. ..
T Consensus 66 ~-~~~~~----~~ii~iSa~~~~~----------------~~~~~G~~~vGKstlin~l~~~~---------------~~ 109 (141)
T cd01857 66 Y-FKKEG----IVVVFFSALKENA----------------TIGLVGYPNVGKSSLINALVGKK---------------KV 109 (141)
T ss_pred H-HHhcC----CeEEEEEecCCCc----------------EEEEECCCCCCHHHHHHHHhCCC---------------ce
Confidence 3 33333 3688999987754 57789999999999999999532 12
Q ss_pred cccCCCCCeeeeEeecccccccccccccccccC
Q 015085 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 348 t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++..+|+|+....+ .++....++||||+..
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 110 SVSATPGKTKHFQTI--FLTPTITLCDCPGLVF 140 (141)
T ss_pred eeCCCCCcccceEEE--EeCCCEEEEECCCcCC
Confidence 355668888776554 3455689999999964
No 14
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.77 E-value=4.4e-18 Score=152.94 Aligned_cols=152 Identities=26% Similarity=0.362 Sum_probs=108.6
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 185 TVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 185 ~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
...+++.+.++++|+|++|+|+.++....+..+.+.+. + .++++|+||+|+++. .....
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~------------~-----k~~ilVlNK~Dl~~~----~~~~~ 66 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG------------N-----KPRIIVLNKADLADP----KKTKK 66 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc------------C-----CCEEEEEehhhcCCh----HHHHH
Confidence 34567788899999999999998876655544444332 2 289999999999743 33445
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc------------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG------------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~------------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
|.+.+ +..+ ..++.+|++++.|+++|.+.+..... ..-.++++|.+|+|||||+|.|.+..
T Consensus 67 ~~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~-- 139 (171)
T cd01856 67 WLKYF-ESKG----EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK-- 139 (171)
T ss_pred HHHHH-HhcC----CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC--
Confidence 55332 2222 46889999999999999988866531 11256779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
..+++..+|||.+...+. +.....++||||+.
T Consensus 140 -------------~~~~~~~~~~T~~~~~~~--~~~~~~~iDtpG~~ 171 (171)
T cd01856 140 -------------VAKVGNKPGVTKGIQWIK--ISPGIYLLDTPGIL 171 (171)
T ss_pred -------------ceeecCCCCEEeeeEEEE--ecCCEEEEECCCCC
Confidence 234567789998876654 33567899999984
No 15
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.77 E-value=1.3e-18 Score=156.52 Aligned_cols=145 Identities=29% Similarity=0.458 Sum_probs=99.3
Q ss_pred cEEEEEEeCCCCCCCchHHHHHHh--hhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 198 SVVLMVVDAADFDGSFPRKVAKMV--SDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 198 dlVl~VvD~~d~~~s~~~~l~~~l--~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
|+|++|+|++++.++.++.+.+.+ ... + +|+|+|+||+||+++ +.+..|++.+.+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~----------~-----kp~IlVlNK~DL~~~----~~l~~~~~~~~~~~~~ 61 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGG----------N-----KKLVLVLNKIDLVPK----ENVEKWLKYLRREFPT 61 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccC----------C-----CCEEEEEehhhcCCH----HHHHHHHHHHHhhCCE
Confidence 789999999998888888887763 211 2 389999999999854 5677888766543310
Q ss_pred Ccc--------------------ceEEEeEEEeecCcchhccchhhhcccC-----CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 276 SKI--------------------TKLHFVSAVKNWGLKSLIDDVVDLAGKR-----GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 276 ~~~--------------------~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~-----g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+ ....++|+..++|.+.+++.+.++...+ ..++++|.+|+|||||||+|.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 62 VAFKASTQSQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred EEEEecccccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 000 0112334455556666655554433222 367779999999999999999532
Q ss_pred cCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 331 DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 331 ~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
...++..||+|.+...+. +.....++||||+
T Consensus 142 ---------------~~~~~~~pg~T~~~~~~~--~~~~~~l~DtPGi 172 (172)
T cd04178 142 ---------------ACNVGATPGVTKSMQEVH--LDKKVKLLDSPGI 172 (172)
T ss_pred ---------------cceecCCCCeEcceEEEE--eCCCEEEEECcCC
Confidence 235577899999876653 4456889999996
No 16
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.75 E-value=1.9e-17 Score=146.34 Aligned_cols=145 Identities=32% Similarity=0.503 Sum_probs=100.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
..+++|+|++|+|+.++....+..+.+++... + .|+++|+||+|+++. .....|. ...+.
T Consensus 9 i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~----------~-----~p~iiv~NK~Dl~~~----~~~~~~~-~~~~~ 68 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSRKLERYVLEL----------G-----KKLLIVLNKADLVPK----EVLEKWK-SIKES 68 (156)
T ss_pred HHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC----------C-----CcEEEEEEhHHhCCH----HHHHHHH-HHHHh
Confidence 34458999999999887666565555544321 3 389999999999743 2334443 22222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhccc---CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~---~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
.+ ..++.+||+++.|+++|++.+.++... ...++++|.+|+|||||+|.|.+.. ...+
T Consensus 69 ~~----~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~---------------~~~~ 129 (156)
T cd01859 69 EG----IPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH---------------SAST 129 (156)
T ss_pred CC----CcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC---------------cccc
Confidence 22 358999999999999999998766533 3356679999999999999998422 2234
Q ss_pred cCCCCCeeeeEeecccccccccccccccc
Q 015085 350 APVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 350 s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
++.+|+|.....+ ..+....++||||+
T Consensus 130 ~~~~~~t~~~~~~--~~~~~~~~~DtpGi 156 (156)
T cd01859 130 SPSPGYTKGEQLV--KITSKIYLLDTPGV 156 (156)
T ss_pred CCCCCeeeeeEEE--EcCCCEEEEECcCC
Confidence 5667888765433 23446789999996
No 17
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.74 E-value=3e-17 Score=155.95 Aligned_cols=163 Identities=21% Similarity=0.215 Sum_probs=108.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....+|.+++|+|+.++..++ ..+.+++.... ..+ .++++|+||+||.+.. ....+|.+.+ +.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~-------~~~-----i~~vIV~NK~DL~~~~---~~~~~~~~~~-~~ 95 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAE-------AQN-----IEPIIVLNKIDLLDDE---DMEKEQLDIY-RN 95 (245)
T ss_pred ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHH-------HCC-----CCEEEEEECcccCCCH---HHHHHHHHHH-HH
Confidence 356789999999999876554 34566654321 113 3899999999997532 2223454433 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|++.+. +..++++|.+|||||||||.|++......|++......+
T Consensus 96 ~g----~~v~~~SAktg~gi~eLf~~l~-----~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G-------- 158 (245)
T TIGR00157 96 IG----YQVLMTSSKNQDGLKELIEALQ-----NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLG-------- 158 (245)
T ss_pred CC----CeEEEEecCCchhHHHHHhhhc-----CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCC--------
Confidence 33 3689999999999999998773 234566999999999999999987766666433222222
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
.+||.+...+. + .+..++||||+.... ...++.++..
T Consensus 159 ~hTT~~~~l~~--l-~~~~liDtPG~~~~~--l~~~~~~~~~ 195 (245)
T TIGR00157 159 KHTTTHVELFH--F-HGGLIADTPGFNEFG--LWHLEPEQLT 195 (245)
T ss_pred CCcCCceEEEE--c-CCcEEEeCCCccccC--CCCCCHHHHH
Confidence 34666554443 3 356899999997532 3446655543
No 18
>PRK00098 GTPase RsgA; Reviewed
Probab=99.70 E-value=3.2e-16 Score=153.12 Aligned_cols=165 Identities=26% Similarity=0.261 Sum_probs=107.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.++... ...+.+++.... ..++ |+++|+||+||... ......|... ++.
T Consensus 77 iaaniD~vllV~d~~~p~~~-~~~idr~L~~~~-------~~~i-----p~iIVlNK~DL~~~---~~~~~~~~~~-~~~ 139 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFS-TDLLDRFLVLAE-------ANGI-----KPIIVLNKIDLLDD---LEEARELLAL-YRA 139 (298)
T ss_pred eeecCCEEEEEEECCCCCCC-HHHHHHHHHHHH-------HCCC-----CEEEEEEhHHcCCC---HHHHHHHHHH-HHH
Confidence 35788999999999875432 334455554321 1233 89999999999632 2334445433 333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|++.+. +..++++|++|||||||||+|++......|.+......+.+
T Consensus 140 ~g----~~v~~vSA~~g~gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~h------ 204 (298)
T PRK00098 140 IG----YDVLELSAKEGEGLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKH------ 204 (298)
T ss_pred CC----CeEEEEeCCCCccHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCc------
Confidence 44 3689999999999999988762 22455599999999999999999888777754432222222
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL 395 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~ 395 (413)
||.....+ .++....++||||+...+ ...++..+...
T Consensus 205 --tT~~~~~~--~~~~~~~~~DtpG~~~~~--~~~~~~~~~~~ 241 (298)
T PRK00098 205 --TTTHVELY--DLPGGGLLIDTPGFSSFG--LHDLEAEELEH 241 (298)
T ss_pred --ccccEEEE--EcCCCcEEEECCCcCccC--CCCCCHHHHHH
Confidence 44333222 244567999999997532 33466665444
No 19
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=150.33 Aligned_cols=165 Identities=24% Similarity=0.288 Sum_probs=113.4
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...|-+++|+.+.+++.+ ...+.++|... +..|. ..++|+||+||++..... .+++. ...+..|
T Consensus 78 ~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~a-------e~~gi-----~pvIvlnK~DL~~~~~~~--~~~~~-~~y~~~g 141 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-TNLLDRYLVLA-------EAGGI-----EPVIVLNKIDLLDDEEAA--VKELL-REYEDIG 141 (301)
T ss_pred cccceEEEEEeccCCCCC-HHHHHHHHHHH-------HHcCC-----cEEEEEEccccCcchHHH--HHHHH-HHHHhCC
Confidence 346778888888887765 34566776543 22344 578889999999653111 12222 2344455
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
..++.+|++.+.|+++|.+.+ .++-.+++|.+|||||||+|+|.+......|++++....++|.|+.
T Consensus 142 ----y~v~~~s~~~~~~~~~l~~~l-----~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~---- 208 (301)
T COG1162 142 ----YPVLFVSAKNGDGLEELAELL-----AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH---- 208 (301)
T ss_pred ----eeEEEecCcCcccHHHHHHHh-----cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce----
Confidence 478999999999999988877 2234455999999999999999998877778777666666554433
Q ss_pred CeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHH
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLV 396 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v 396 (413)
...+ .++.+++++||||+.... ...+..++....
T Consensus 209 ----~~l~--~l~~gG~iiDTPGf~~~~--l~~~~~e~l~~~ 242 (301)
T COG1162 209 ----VELF--PLPGGGWIIDTPGFRSLG--LAHLEPEDLVQA 242 (301)
T ss_pred ----EEEE--EcCCCCEEEeCCCCCccC--cccCCHHHHHHH
Confidence 3233 356789999999997543 356777775543
No 20
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.69 E-value=3.3e-16 Score=152.24 Aligned_cols=164 Identities=26% Similarity=0.238 Sum_probs=108.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.++..+ ...+.+++... ...++ |+++|+||+||.+. .....|... ...
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~-------~~~~i-----p~iIVlNK~DL~~~----~~~~~~~~~-~~~ 136 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLVAA-------EAAGI-----EPVIVLTKADLLDD----EEEELELVE-ALA 136 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHH-------HHcCC-----CEEEEEEHHHCCCh----HHHHHHHHH-HHh
Confidence 36678999999999876522 23455555432 11133 89999999999754 122233322 222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|...+. +..+.++|++|+|||||||+|+|...+..|.+.. +...-
T Consensus 137 ~g----~~v~~vSA~~g~gi~~L~~~L~-----~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~--------~~~~g 199 (287)
T cd01854 137 LG----YPVLAVSAKTGEGLDELREYLK-----GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE--------KLGRG 199 (287)
T ss_pred CC----CeEEEEECCCCccHHHHHhhhc-----cceEEEECCCCCCHHHHHHHHhchhhccccceec--------cCCCC
Confidence 33 3689999999999999888773 2346669999999999999999988877774331 11223
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL 395 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~ 395 (413)
.+||.....+ .+.....++||||+.... ...++..+...
T Consensus 200 ~~tT~~~~~~--~~~~~~~liDtPG~~~~~--~~~~~~~~~~~ 238 (287)
T cd01854 200 RHTTTHRELF--PLPGGGLLIDTPGFREFG--LLHIDPEELAH 238 (287)
T ss_pred CcccceEEEE--EcCCCCEEEECCCCCccC--CccCCHHHHHH
Confidence 4566665444 344457899999996532 23466666443
No 21
>PRK12288 GTPase RsgA; Reviewed
Probab=99.68 E-value=3.8e-16 Score=155.07 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...|.+++|.+.. ++.+ ...+.+++... +..++ ++++|+||+||++.. ....+..|... ++..|
T Consensus 119 ANvD~vlIV~s~~-p~~s-~~~Ldr~L~~a-------~~~~i-----~~VIVlNK~DL~~~~-~~~~~~~~~~~-y~~~g 182 (347)
T PRK12288 119 ANIDQIVIVSAVL-PELS-LNIIDRYLVAC-------ETLGI-----EPLIVLNKIDLLDDE-GRAFVNEQLDI-YRNIG 182 (347)
T ss_pred EEccEEEEEEeCC-CCCC-HHHHHHHHHHH-------HhcCC-----CEEEEEECccCCCcH-HHHHHHHHHHH-HHhCC
Confidence 4578888777753 3333 34556665432 11233 889999999998642 11234455443 23343
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
..++.+||.++.|+++|++.+.. .-++++|.+|||||||||+|++......|++......++|
T Consensus 183 ----~~v~~vSA~tg~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrH-------- 245 (347)
T PRK12288 183 ----YRVLMVSSHTGEGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQH-------- 245 (347)
T ss_pred ----CeEEEEeCCCCcCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcC--------
Confidence 37899999999999999988732 2466699999999999999998877666755544444444
Q ss_pred CeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
||.....+ .++.+..++||||+.... +..++..+..
T Consensus 246 TT~~~~l~--~l~~~~~liDTPGir~~~--l~~~~~~~l~ 281 (347)
T PRK12288 246 TTTAARLY--HFPHGGDLIDSPGVREFG--LWHLEPEQVT 281 (347)
T ss_pred ceeeEEEE--EecCCCEEEECCCCCccc--CCCCCHHHHH
Confidence 33333222 344567899999997533 2335544443
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.61 E-value=6e-15 Score=151.27 Aligned_cols=159 Identities=26% Similarity=0.294 Sum_probs=112.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+......
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~----------~~-----piilVvNK~D~~~~~~~--- 125 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS----------GK-----PVILVANKIDGKKEDAV--- 125 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh----------CC-----CEEEEEECccCCccccc---
Confidence 4455666777788999999999999986555566677776542 33 89999999998754211
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC----------CcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR----------GNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~----------g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
..+ +...| +.+++.+||.++.|+.++++.+.+..... -++.++|.+|+|||||+|.|++..
T Consensus 126 ~~~-----~~~lg---~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~- 196 (429)
T TIGR03594 126 AAE-----FYSLG---FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE- 196 (429)
T ss_pred HHH-----HHhcC---CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC-
Confidence 111 11233 45789999999999999998887655321 246779999999999999999532
Q ss_pred CCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 332 ~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+....... ....++||||+...
T Consensus 197 --------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 197 --------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred --------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 1234567899987765433222 24679999998643
No 23
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=5.7e-15 Score=153.23 Aligned_cols=157 Identities=29% Similarity=0.330 Sum_probs=106.5
Q ss_pred hHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH
Q 015085 183 DHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF 262 (413)
Q Consensus 183 ~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l 262 (413)
.+.+...+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... .+..
T Consensus 104 ~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~----------~-----~piilV~NK~Dl~~~~--~~~~ 166 (472)
T PRK03003 104 QASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS----------G-----KPVILAANKVDDERGE--ADAA 166 (472)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECccCCccc--hhhH
Confidence 334555566678899999999999986544455566655431 3 3999999999986431 1111
Q ss_pred HHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc----------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 263 EHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK----------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 263 ~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~----------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
+.| ..| +..++.+||++|.|+++|++.|.+.... .-.+.++|.+|||||||+|+|++..
T Consensus 167 ~~~------~~g---~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~-- 235 (472)
T PRK03003 167 ALW------SLG---LGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE-- 235 (472)
T ss_pred HHH------hcC---CCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC--
Confidence 111 223 2456789999999999998888655432 1256779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
...++..+|||++.+....... ....++||||+..
T Consensus 236 -------------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 236 -------------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred -------------cccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 1234567899987654332222 2457999999864
No 24
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.59 E-value=6.7e-15 Score=143.67 Aligned_cols=155 Identities=30% Similarity=0.476 Sum_probs=110.0
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 187 ~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
.+.+...++.+||||.|+||+|+.++....+.+++... .| + +.+|+|+||+||+|. +.++.|+
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~---------~g---n-KkLILVLNK~DLVPr----Ev~e~Wl 199 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA---------HG---N-KKLILVLNKIDLVPR----EVVEKWL 199 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc---------cC---C-ceEEEEeehhccCCH----HHHHHHH
Confidence 34555667779999999999999999999999888532 12 2 389999999999987 6789999
Q ss_pred HHHHHHcCCCccceEEEeEEEee-------------cCcchhccchhhhccc---C--CcEEEEcCCCCcHHHHHHHHHc
Q 015085 267 RQRAREDGISKITKLHFVSAVKN-------------WGLKSLIDDVVDLAGK---R--GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~-------------~Gi~~Ll~~I~~l~~~---~--g~~~~vG~ng~GKSTLin~L~g 328 (413)
.++.+.. ..|.+..+... .|.+.|+..+.++... + -.+.++|-+|+||||+||+|..
T Consensus 200 ~YLr~~~-----ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~ 274 (435)
T KOG2484|consen 200 VYLRREG-----PTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKR 274 (435)
T ss_pred HHHHhhC-----CcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHH
Confidence 8765543 23444333222 2334444444333322 1 1455699999999999999985
Q ss_pred cCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 329 SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 329 ~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
... -.+...||.|..+..+ .++..+.|+|.||+..
T Consensus 275 ~k~---------------C~vg~~pGvT~smqeV--~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 275 RKA---------------CNVGNVPGVTRSMQEV--KLDKKIRLLDSPGIVP 309 (435)
T ss_pred hcc---------------ccCCCCccchhhhhhe--eccCCceeccCCceee
Confidence 442 2345779999887666 4788899999999974
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.7e-14 Score=148.33 Aligned_cols=159 Identities=24% Similarity=0.291 Sum_probs=110.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...+.+.+..++..+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+... ...
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~-----piilv~NK~D~~~~---~~~ 127 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS----------NK-----PVILVVNKVDGPDE---EAD 127 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CC-----cEEEEEECccCccc---hhh
Confidence 4445666666778899999999999886555556666666532 33 89999999997532 112
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++ ...| +.+++.+||+++.|++++++.+..... ..-++.++|.+|+|||||+|+|++..
T Consensus 128 ~~~~-----~~lg---~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~-- 197 (435)
T PRK00093 128 AYEF-----YSLG---LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE-- 197 (435)
T ss_pred HHHH-----HhcC---CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC--
Confidence 2222 1223 345789999999999999988865221 12357779999999999999999542
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+...+... ....++||||+...
T Consensus 198 -------------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 198 -------------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred -------------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 2234667899998865543222 34689999998643
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=2e-15 Score=137.14 Aligned_cols=131 Identities=23% Similarity=0.351 Sum_probs=94.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~ 346 (413)
|...+..+.||..++++.| ++...+|++.+ +|++|+||||||++|.++..+++|.+..+...+ ..
T Consensus 3 i~i~~l~K~fg~~~VLkgi-~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGI-SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeCCeEEecCc-ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 3445677889999999999 88888898877 999999999999999999999999865333111 11
Q ss_pred cccc--CCCCCe-eeeEe-----ecccc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 347 LTEA--PVPGTT-LGIVR-----VEGVL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 347 ~t~s--~~pgtT-~~~i~-----~~~~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+.++ -+|..| ++++. +...- .....+++..|+. ..+.++..|||||||||+|||+| .|+....|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 1111 134322 22221 11000 0123678888997 67899999999999999999999 67888877
Q ss_pred CC
Q 015085 411 VS 412 (413)
Q Consensus 411 ~~ 412 (413)
+|
T Consensus 162 EP 163 (240)
T COG1126 162 EP 163 (240)
T ss_pred CC
Confidence 76
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=5e-15 Score=137.80 Aligned_cols=129 Identities=23% Similarity=0.322 Sum_probs=94.1
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------cccccc--CCC
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------SHLTEA--PVP 353 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------~~~t~s--~~p 353 (413)
-...+.|+...+++.+ ++....|+++. +|++|||||||+|+|+|+..|.+|.+......+ ..+.+. -+|
T Consensus 7 ~~v~~~f~~~~vl~~i-~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlP 85 (248)
T COG1116 7 EGVSKSFGGVEVLEDI-NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLP 85 (248)
T ss_pred EeeEEEeCceEEeccc-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccc
Confidence 3455667778888888 88888888766 999999999999999999999999755433222 111111 134
Q ss_pred C-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |.++++.+.....+ ...+++..|+. ..+++++.||||++|||++||++ .|+.+.+|+||
T Consensus 86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3 33455544322211 23567788886 56799999999999999999999 78999999997
No 28
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.56 E-value=3.4e-14 Score=142.61 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=112.7
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 185 TVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 185 ~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
.+.+++++.++.+|+||.||||+++..-+.+.+.+++.... ..+..++++||+||++. +....
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------------~~K~~~LLvNKaDLl~~----~qr~a 225 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------------PSKANVLLVNKADLLPP----EQRVA 225 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-------------cccceEEEEehhhcCCH----HHHHH
Confidence 36789999999999999999999988777888888886531 11268999999999975 66778
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeec----------------Ccchhcc------------ch----------hhh----
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNW----------------GLKSLID------------DV----------VDL---- 302 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~----------------Gi~~Ll~------------~I----------~~l---- 302 (413)
|...+..+. ..+++.||.... +...... .. .+.
T Consensus 226 Wa~YF~~~n-----i~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s 300 (562)
T KOG1424|consen 226 WAEYFRQNN-----IPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLIS 300 (562)
T ss_pred HHHHHHhcC-----ceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhh
Confidence 877654432 357777776500 0000000 00 000
Q ss_pred -c-----c--cC--CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 303 -A-----G--KR--GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 303 -~-----~--~~--g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
. . .+ -.|.+||.+|||||++||+|.|. +.+.+|..||-|..+..+ .+.....|
T Consensus 301 ~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~---------------KkVsVS~TPGkTKHFQTi--~ls~~v~L 363 (562)
T KOG1424|consen 301 AMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGR---------------KKVSVSSTPGKTKHFQTI--FLSPSVCL 363 (562)
T ss_pred ccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcC---------------ceeeeecCCCCcceeEEE--EcCCCcee
Confidence 0 0 00 13445999999999999999953 456789999999999877 47778999
Q ss_pred cccccccCCC
Q 015085 373 FDTPGLLHPN 382 (413)
Q Consensus 373 iDtpGl~~~~ 382 (413)
.|.||+..+.
T Consensus 364 CDCPGLVfPS 373 (562)
T KOG1424|consen 364 CDCPGLVFPS 373 (562)
T ss_pred cCCCCccccC
Confidence 9999997543
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.2e-15 Score=140.59 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=92.8
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc---------cccccccc---
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK---------NIVSHLTE--- 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~---------~~v~~~t~--- 349 (413)
+-...-.|+-..+++.| ++...+|++.. +||||+|||||+++|+|+++|.+|.+.... ..+.++++
T Consensus 7 v~nl~v~y~~~~vl~~i-~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~ 85 (254)
T COG1121 7 VENLTVSYGNRPVLEDI-SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS 85 (254)
T ss_pred EeeeEEEECCEeeeecc-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccc
Confidence 33444456543688998 88888888766 999999999999999999999999865321 23444433
Q ss_pred --cCCCCCeeeeEeeccccc--------------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 --APVPGTTLGIVRVEGVLP--------------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 --s~~pgtT~~~i~~~~~l~--------------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
..+|-|..+.+... ... .....++..|+. ..++...+|||||+|||.+||+| .|+.+.||
T Consensus 86 ~d~~fP~tV~d~V~~g-~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 86 VDRSFPITVKDVVLLG-RYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred cCCCCCcCHHHHHHcc-CcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 23455655554431 111 112456677876 46788999999999999999999 67889999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 165 EP~ 167 (254)
T COG1121 165 EPF 167 (254)
T ss_pred CCc
Confidence 986
No 30
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=2e-14 Score=156.01 Aligned_cols=158 Identities=25% Similarity=0.284 Sum_probs=108.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...+.+.+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~----------~-----~pvIlV~NK~D~~~~~---~~ 401 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA----------G-----KPVVLAVNKIDDQASE---YD 401 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEECcccccch---hh
Confidence 4444556667778899999999999876555566666666432 3 3999999999986431 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC------------CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR------------GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~------------g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
..++ . ..| +..++.+||++|.|+.+|++.|.+..... .++.++|.+|||||||+|.|++.
T Consensus 402 ~~~~----~-~lg---~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 402 AAEF----W-KLG---LGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred HHHH----H-HcC---CCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 1111 1 123 34578899999999999988876554321 25777999999999999999953
Q ss_pred CcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 330 VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 330 ~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
. ...++..+|||++.+....... ....++||||+..
T Consensus 474 ~---------------~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 474 E---------------RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred c---------------ccccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 2 1234567899988755332222 2456899999864
No 31
>PRK01889 GTPase RsgA; Reviewed
Probab=99.54 E-value=2.4e-14 Score=143.15 Aligned_cols=150 Identities=27% Similarity=0.319 Sum_probs=96.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+...|.|++|+++. ++.. ...+.++|... +..+. +.++|+||+||++. .+...+|+... ..
T Consensus 110 aANvD~vliV~s~~-p~~~-~~~ldr~L~~a-------~~~~i-----~piIVLNK~DL~~~---~~~~~~~~~~~--~~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLN-HDFN-LRRIERYLALA-------WESGA-----EPVIVLTKADLCED---AEEKIAEVEAL--AP 170 (356)
T ss_pred EEeCCEEEEEEecC-CCCC-hhHHHHHHHHH-------HHcCC-----CEEEEEEChhcCCC---HHHHHHHHHHh--CC
Confidence 45689999999984 2222 23556666543 12243 67899999999854 12222333322 12
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCC
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~p 353 (413)
| ..|+.+|++++.|++.|...+. .+..+.++|.+|+|||||+|+|+|...+..|.+........+
T Consensus 171 g----~~Vi~vSa~~g~gl~~L~~~L~----~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~------- 235 (356)
T PRK01889 171 G----VPVLAVSALDGEGLDVLAAWLS----GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH------- 235 (356)
T ss_pred C----CcEEEEECCCCccHHHHHHHhh----cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-------
Confidence 2 4789999999999999888772 222456699999999999999999998888865433222212
Q ss_pred CCeeeeEeecccccccccccccccccC
Q 015085 354 GTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 354 gtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
||..... +.+..+..++||||+..
T Consensus 236 -tt~~~~l--~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 236 -TTTHREL--HPLPSGGLLIDTPGMRE 259 (356)
T ss_pred -hhhhccE--EEecCCCeecCCCchhh
Confidence 2221111 12344568999999964
No 32
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7e-15 Score=144.04 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=94.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
+.+.+..+.||....++.+ ++....|++++ +||||||||||||+|+|+..+++|++......+..+..
T Consensus 4 i~l~~v~K~yg~~~~l~~i-~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDV-NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEeeeEEEcCCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 5566777888865466777 77778888776 99999999999999999999999997765555544332
Q ss_pred c--CCCCC-eeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGT-TLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgt-T~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ -+|.. ..+++.+...+.+ ..++..+-++. ..++.+..|||||+|||+++|+| +|+.|.+|+||
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 1 24553 3455554433221 01233344443 24588999999999999999999 78999999996
No 33
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.51 E-value=5.9e-14 Score=136.49 Aligned_cols=155 Identities=29% Similarity=0.415 Sum_probs=112.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.+-..+..+|+||+|+||+|+-+.....+.++|.+. + ..+.+|+|+||+||+|.. ....|++.
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke-----------~--phKHli~vLNKvDLVPtw----vt~~Wv~~ 268 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE-----------K--PHKHLIYVLNKVDLVPTW----VTAKWVRH 268 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhc-----------C--CcceeEEEeeccccccHH----HHHHHHHH
Confidence 344567889999999999999999889999988753 1 123799999999999873 35678877
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---cCC--cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---KRG--NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---~~g--~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~ 343 (413)
+.+++- .--+-.|..+.+|-..|++.+.++.. .+. .+.+||.+|+|||++||+|-...
T Consensus 269 lSkeyP----TiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk------------- 331 (572)
T KOG2423|consen 269 LSKEYP----TIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK------------- 331 (572)
T ss_pred HhhhCc----ceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc-------------
Confidence 665542 12344677788888887777765532 223 35559999999999999997422
Q ss_pred cccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 344 v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
.-.+.++||-|.-...+ .+...++|||.||+..+
T Consensus 332 --VCkvAPIpGETKVWQYI--tLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 332 --VCKVAPIPGETKVWQYI--TLMKRIFLIDCPGVVYP 365 (572)
T ss_pred --cccccCCCCcchHHHHH--HHHhceeEecCCCccCC
Confidence 23457889988543333 35667899999999864
No 34
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.49 E-value=3.6e-14 Score=126.41 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=84.2
Q ss_pred chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCC----------------
Q 015085 293 KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGT---------------- 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgt---------------- 355 (413)
.+.++.+ ++...+|+.. ++|++|+||||||+.|.+...|++|.+......+..+....+|-.
T Consensus 15 ~~aL~~v-s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDV-SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCc-eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 5577787 7777777754 499999999999999999999999986655444444444433322
Q ss_pred --eeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 --TLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 --T~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+.+.++...- ....++|..|+. +.+..+..||||||||+.|||++ +|.....|+|
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 222222221111 013578899997 56889999999999999999999 5666666665
No 35
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.48 E-value=8.7e-14 Score=131.55 Aligned_cols=127 Identities=21% Similarity=0.321 Sum_probs=88.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cccccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVSHLTEA 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~~~t~s 350 (413)
-...-+|+...+++.+ ++...+|++.. +|+||||||||+++|+|.++|.+|.+.-+.. .+..+.++
T Consensus 6 ~~ls~~y~~~~il~~l-s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 6 ENLSFGYGGKPILDDL-SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEEEEEECCeeEEecc-eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence 3445678888899999 88888888877 9999999999999999999999998653322 23333333
Q ss_pred CC--CC-CeeeeEeeccccccc--------------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccC
Q 015085 351 PV--PG-TTLGIVRVEGVLPAQ--------------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIK 410 (413)
Q Consensus 351 ~~--pg-tT~~~i~~~~~l~~~--------------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~ 410 (413)
.. .+ |..+.+.. ++.+.. .+.++..|+. ..++..+.|||||+||+++||+|.+ +...||
T Consensus 85 ~~~~~~~tV~d~V~~-GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 85 PSAPFGLTVYELVLL-GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCCCCCcEEeehHhh-cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 21 12 33344322 222211 1224455665 4578899999999999999999955 567777
Q ss_pred CC
Q 015085 411 VS 412 (413)
Q Consensus 411 ~~ 412 (413)
+|
T Consensus 164 EP 165 (258)
T COG1120 164 EP 165 (258)
T ss_pred CC
Confidence 76
No 36
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.48 E-value=3.6e-14 Score=139.80 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=96.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc----------c
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT----------E 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t----------~ 349 (413)
+.+.+..+.||....++.+ ++...+|+++. +||+||||||||++|+|+..|++|.+......+..+. +
T Consensus 6 l~i~~v~k~yg~~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEEEeeeeecCCeeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 5566778899977888888 88888888775 9999999999999999999999998664443333322 2
Q ss_pred c--CCCCCee-eeEeecccccc----------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTTL-GIVRVEGVLPA----------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT~-~~i~~~~~l~~----------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ -+|..|. +++.+...+.. ..++++..|+. ..++..+.|||||+|||++||+| .|+...||+||
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 2 2455443 44444322111 12456666765 45789999999999999999999 57789999886
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=2.7e-13 Score=125.84 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=77.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc----------------ccC--CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT----------------EAP--VP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t----------------~s~--~p 353 (413)
..++..+ ++..++|+++. +|++|||||||+|+|.++..|++|.+......+..+. ++. +|
T Consensus 18 ~~~L~~v-~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDV-NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 3566777 78888888766 9999999999999999999999887443322222221 111 12
Q ss_pred CCe-eeeEeeccccc---------cccccccccccc-CCC-CCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 354 GTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPN-QITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 354 gtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~-~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..| .+.+..+..+. ....+.+-.|+. ..+ +.+..|||||+|||++||+| .|+....|+|
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 222 22222111010 012345555775 333 78999999999999999999 5677777766
No 38
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.35 E-value=3.9e-13 Score=124.83 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=93.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~ 349 (413)
+-...+.|+...+++.+ ++....|++.+ +|++||||||++++|.++..|++|.+......+ .++-+
T Consensus 4 ~~nvsk~y~~~~av~~v-~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDV-NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeee-eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 34455677788888888 88888888877 999999999999999999999999865433222 22211
Q ss_pred --cCCCCCee-eeEee---cccccc------ccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 350 --APVPGTTL-GIVRV---EGVLPA------QAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 350 --s~~pgtT~-~~i~~---~~~l~~------~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.-+|..|. +.+.. ...|+. ..++++..|+. ..++++++|||||||||-++|+| .|..+.+|+|
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 23455553 22211 011111 23678888885 35899999999999999999999 5788888888
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
|
T Consensus 163 F 163 (309)
T COG1125 163 F 163 (309)
T ss_pred c
Confidence 6
No 39
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=1.4e-12 Score=120.01 Aligned_cols=126 Identities=23% Similarity=0.318 Sum_probs=87.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--------------
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA-------------- 350 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s-------------- 350 (413)
...+||.-+++..+ ++....|++.. +|+||+|||||+++|+|+.++.+|.+......+..+...
T Consensus 9 l~~~YG~~~~L~gv-sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 9 LSAGYGKIQALRGV-SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87 (237)
T ss_pred EeecccceeEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence 34578888888888 88888888776 999999999999999999999999876554444333221
Q ss_pred -CCCCCee-eeEeeccc-ccc-------ccccccc-cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 -PVPGTTL-GIVRVEGV-LPA-------QAKLFDT-PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 -~~pgtT~-~~i~~~~~-l~~-------~~~liDt-pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
-+|..|. +++..-.. ... .-++|+. |-+. +.++....|||||||.++|+|+| .|+...||+|
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1222222 22221100 110 0113332 4444 56899999999999999999999 7899999987
No 40
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.8e-12 Score=120.01 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=80.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccc----cCCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTE----APVPGT 355 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~----s~~pgt 355 (413)
.+++.+ ++...+|+++. +|++|+|||||.++|+|+..++.|.+...... +..+.+ |-.|--
T Consensus 21 ~~l~~V-S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNV-SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcce-eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 378888 78788888777 99999999999999999999999986643321 111111 112222
Q ss_pred eee-eEeeccccc-------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLG-IVRVEGVLP-------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~-~i~~~~~l~-------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|.+ .+.-+.... ....++|..|+. ..++.+++|||||+||++|+||| .|+...+|+|
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 211 111110000 024577888886 45789999999999999999999 5677777776
No 41
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.8e-12 Score=123.48 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=82.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---cccccc----------c--
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---IVSHLT----------E-- 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---~v~~~t----------~-- 349 (413)
.++.++....++.| ++..+.|+... +|+||+|||||+++|+|+..|+.|.+..... ....+. +
T Consensus 8 ~~~~~~~~~a~~di-~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 8 VKKRFGAFGALDDI-SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhhcccccccccc-eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 34455555555556 66666777666 9999999999999999999999998653332 111111 0
Q ss_pred cCCCCCe-eeeEeeccccc-----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APVPGTT-LGIVRVEGVLP-----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~pgtT-~~~i~~~~~l~-----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-++..| .+.|.+-.... ...+++++..+. -.++++..|||||+|||++||++ .|+...||+||
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 0122222 23333211111 012345555554 24588999999999999999999 68999999997
No 42
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.1e-12 Score=125.22 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=84.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc---------------cccC---CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL---------------TEAP---VP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~---------------t~s~---~p 353 (413)
..+++.+ ++...+|+++. +|.+|+|||||++++.++..|++|.+.-+...+..+ .+.. ..
T Consensus 19 ~~al~~v-sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 19 VTALDDV-SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeeeccc-eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 4567777 78888999988 999999999999999999999999865333222221 1111 12
Q ss_pred CCeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccccCC
Q 015085 354 GTTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYRIKV 411 (413)
Q Consensus 354 gtT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~l~~ 411 (413)
.|..+.+.++..+.+ ..++++..|+. +.++++..|||||+|||.|||||. |+....|+
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 244455555433322 24688888997 678999999999999999999994 55555444
No 43
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=1.5e-12 Score=120.26 Aligned_cols=132 Identities=22% Similarity=0.299 Sum_probs=93.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL------------ 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~------------ 347 (413)
|.+-+..+.+|-..+++.+ ++..++|++.. +|++|+|||||+++|.|+++|++|++......+..+
T Consensus 9 I~vr~v~~~fG~~~Ild~v-~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGV-DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EEEeeeeeecCCEEEecCc-eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 4556677889999999999 89999999887 999999999999999999999999865332222211
Q ss_pred ---cccC--C-CCCeeeeEeeccc----cccc------cccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 348 ---TEAP--V-PGTTLGIVRVEGV----LPAQ------AKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 ---t~s~--~-pgtT~~~i~~~~~----l~~~------~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+.. + .-|+.+++.++.. +++. ..-+...|+. . .+.++++||||.++|+++|||| .|+..
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 1111 1 1144455555321 1110 1224556665 2 5789999999999999999999 67777
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
-+|+|+
T Consensus 168 ~~DEPt 173 (263)
T COG1127 168 FLDEPT 173 (263)
T ss_pred EecCCC
Confidence 777774
No 44
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.6e-12 Score=119.64 Aligned_cols=129 Identities=24% Similarity=0.302 Sum_probs=82.2
Q ss_pred EeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC--Ceee
Q 015085 283 FVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG--TTLG 358 (413)
Q Consensus 283 ~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg--tT~~ 358 (413)
+-+..+.| |....++.| ++....|++++ +|++|+||||||++|.|+..+..|++......+..+....... ...+
T Consensus 6 ~~nl~k~yp~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 6 VKNLSKTYPGGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred EeeeeeecCCCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 34455666 777888888 77778888666 9999999999999999999999997553322211111000000 0001
Q ss_pred eEeecc---------------c------------cc-c-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc-
Q 015085 359 IVRVEG---------------V------------LP-A-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK- 403 (413)
Q Consensus 359 ~i~~~~---------------~------------l~-~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~- 403 (413)
++.+.+ . +. + -...++..|+. ...+.++.|||||||||.|||+|.
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 111000 0 00 0 12345666776 467889999999999999999995
Q ss_pred -CCccccCCC
Q 015085 404 -PRTYRIKVS 412 (413)
Q Consensus 404 -~~~~~l~~~ 412 (413)
|+....|+|
T Consensus 165 ~pkiILADEP 174 (258)
T COG3638 165 QPKIILADEP 174 (258)
T ss_pred CCCEEecCCc
Confidence 455655655
No 45
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.30 E-value=8.4e-12 Score=118.95 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=101.1
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+++.+.+...|+|+-|-||+-+..+....+.+++.. ++-|+|+||+||.+...... +.++++
T Consensus 38 r~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~-----------------k~riiVlNK~DLad~~~~k~-~iq~~~ 99 (335)
T KOG2485|consen 38 RAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPP-----------------KPRIIVLNKMDLADPKEQKK-IIQYLE 99 (335)
T ss_pred HHHHhhcccccEEEEeeccccCCccccHHHHHhcCC-----------------CceEEEEecccccCchhhhH-HHHHHH
Confidence 567778888999999999999888888777777652 27899999999997432222 223322
Q ss_pred HHHHHcCCCccceEEEeEEEeecC--cchhccchh-------hhcc---cCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 268 QRAREDGISKITKLHFVSAVKNWG--LKSLIDDVV-------DLAG---KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~G--i~~Ll~~I~-------~l~~---~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.. . ...++..+..+... +..++..+. .+.. ....++++|.+|+|||||||++.... .
T Consensus 100 ~~----~---~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~----L 168 (335)
T KOG2485|consen 100 WQ----N---LESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVH----L 168 (335)
T ss_pred hh----c---ccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHH----h
Confidence 21 1 12233333332222 333332221 1111 23468889999999999999887433 1
Q ss_pred CCcccccccccccccCCCCCeeeeEe-ecccccccccccccccccCC
Q 015085 336 GDGEEKNIVSHLTEAPVPGTTLGIVR-VEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 336 ~~~~~~~~v~~~t~s~~pgtT~~~i~-~~~~l~~~~~liDtpGl~~~ 381 (413)
. ..+..++.+.||.|+..-. +...-.....++||||+..+
T Consensus 169 r------k~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 169 R------KKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred h------hccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 0 1145677888999986533 22234456899999999864
No 46
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=5.2e-12 Score=126.43 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=88.1
Q ss_pred EeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc
Q 015085 283 FVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA 350 (413)
Q Consensus 283 ~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s 350 (413)
+-...+.| +...+++.+ ++....|+++. +|+||+|||||+++|+|+.++++|.+......+ ..+.+.
T Consensus 6 i~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGI-DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred EEeEEEEeCCCCEEEeee-eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 33445556 555677777 77778888766 999999999999999999999999765332222 111111
Q ss_pred --CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2343 223333322111 0 012456666775 35788999999999999999999 78999999985
No 47
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.1e-11 Score=123.71 Aligned_cols=132 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+ ..+..
T Consensus 7 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNL-NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEEEeEEEEECCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3445556677766677777 77778888766 999999999999999999999999765332222 11111
Q ss_pred c--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|+ |..+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 1 2344 223443332111 0 012355556664 34688999999999999999999 78999999986
No 48
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.25 E-value=1.5e-11 Score=123.02 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=89.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------cccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~ 349 (413)
+.+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+......+. .+..
T Consensus 5 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDI-SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEeCCeEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3444556667666677777 77777788766 9999999999999999999999997653322221 1111
Q ss_pred --cCCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 --APVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+|..| .+.+.+..... ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1234322 23333211100 012356666665 34688999999999999999999 78999999986
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.25 E-value=1.4e-11 Score=124.04 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=89.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------cccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~ 349 (413)
+.+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+. .+..
T Consensus 15 L~l~~l~~~~~~~~~l~~v-sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 15 VELRGISKSFDGKEVISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEEEECCeEEEeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 3344556667666677777 77778888766 9999999999999999999999997653322221 1111
Q ss_pred c--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+|||+++|+| .|+.+.||+|+
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 234422 3333322111 0 012356666775 35688999999999999999999 78999999986
No 50
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.25 E-value=7.5e-12 Score=110.60 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=60.1
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
++..| .+|+.+|++++.|+++|.+.+. +..++++|++|||||||||.|.+......|++++....+++.|+
T Consensus 8 y~~~g----y~v~~~S~~~~~g~~~l~~~l~-----~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt 78 (161)
T PF03193_consen 8 YEKLG----YPVFFISAKTGEGIEELKELLK-----GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT 78 (161)
T ss_dssp HHHTT----SEEEE-BTTTTTTHHHHHHHHT-----TSEEEEECSTTSSHHHHHHHHHTSS----S--------------
T ss_pred HHHcC----CcEEEEeCCCCcCHHHHHHHhc-----CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC
Confidence 44555 4799999999999999988772 23455599999999999999998877667766655455555443
Q ss_pred cCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHH
Q 015085 350 APVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393 (413)
Q Consensus 350 s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~ 393 (413)
. ... + .++.+..++||||+.... ...++..+.
T Consensus 79 ~------~~l--~--~l~~g~~iIDTPGf~~~~--l~~~~~~~l 110 (161)
T PF03193_consen 79 H------REL--F--PLPDGGYIIDTPGFRSFG--LWHIDPEEL 110 (161)
T ss_dssp S------EEE--E--EETTSEEEECSHHHHT----GCCS-HHHH
T ss_pred C------eeE--E--ecCCCcEEEECCCCCccc--cccCCHHHH
Confidence 2 122 2 356678999999997532 233555553
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.24 E-value=4.3e-12 Score=123.73 Aligned_cols=131 Identities=20% Similarity=0.251 Sum_probs=93.2
Q ss_pred EEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-----------ccccccc
Q 015085 282 HFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-----------NIVSHLT 348 (413)
Q Consensus 282 ~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-----------~~v~~~t 348 (413)
......+.|| ...+++.+ ++..+.|++++ +|+||||||||||+|+|+..|++|.+.... ..+..+.
T Consensus 6 ~~~~l~k~~~~~~~~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eecceEEEeCCCCEEEece-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 3456677888 58899999 88889899888 999999999999999999999999754322 1122222
Q ss_pred cc--CCCCCe-eeeEeecccccc---------cccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~~---------~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ..+..| .+.+.+...+.+ ...+++..|+.. .++....||+|++||+.++.+| .|+.+.||+|.
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 22 123333 233322111111 124677778763 3677999999999999999999 78999999984
No 52
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.24 E-value=5.3e-12 Score=116.59 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=80.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------cccccccC----CCCCeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------VSHLTEAP----VPGTTLG 358 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------v~~~t~s~----~pgtT~~ 358 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.... ...|..+
T Consensus 13 ~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDL-SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred Cceeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 4577777 77777888776 99999999999999999999999975432211 12222221 1223333
Q ss_pred eEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 332211100 112345556665 34677899999999999999999 68899999885
No 53
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.23 E-value=2.4e-11 Score=121.74 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=90.2
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC--CCCccccccc----------cc
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR--GGDGEEKNIV----------SH 346 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~--G~~~~~~~~v----------~~ 346 (413)
.+.+-+..+.|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..|++ |.+......+ ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDL-SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEECCeEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 34555666677766677877 77777788766 99999999999999999999999 9754332221 11
Q ss_pred cccc--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+... -+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1111 234422 2333221110 0 012456666775 35788999999999999999999 689999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 164 P~ 165 (362)
T TIGR03258 164 PL 165 (362)
T ss_pred cc
Confidence 85
No 54
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.5e-11 Score=122.15 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=86.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc-
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA- 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s- 350 (413)
+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+...
T Consensus 6 i~~l~~~~~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 6 LRNVTKAYGDVVISKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred EEEEEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 33445566655677777 77777888766 999999999999999999999999754322211 111111
Q ss_pred -CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 85 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1233 222332221100 0 012345666775 34678899999999999999999 68899999985
No 55
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.22 E-value=9.1e-12 Score=124.50 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=87.7
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA-- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s-- 350 (413)
-+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 6 ~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~ 84 (353)
T PRK10851 6 ANIKKSFGRTQVLNDI-SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 (353)
T ss_pred EEEEEEeCCeEEEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 3444556655678887 77778888777 999999999999999999999999764332221 122211
Q ss_pred CCCCCe-eeeEeecccc-------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVL-------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l-------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 234433 2333221110 0 112356666774 35688999999999999999999 78999999885
No 56
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=3e-11 Score=109.16 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=69.0
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
.++...+++.+ ++...+|+++. +|+||+|||||+++|+|.+++.+|++......+...... +......+.+
T Consensus 9 ~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~~~i~~----- 80 (178)
T cd03229 9 RYGQKTVLNDV-SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE--LPPLRRRIGM----- 80 (178)
T ss_pred EECCeEEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchh--HHHHhhcEEE-----
Confidence 34444577777 77778888776 999999999999999999999999654322221111000 0000011111
Q ss_pred ccccccccccccCC----CCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLLHP----NQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~~~----~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.+... +.....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 81 ----~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 81 ----VFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred ----EecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 1111111100 001111999999999999999 67889999885
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.20 E-value=3.1e-11 Score=113.51 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-- 350 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +..+...
T Consensus 7 ~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (232)
T cd03218 7 SKRYGKRKVVNGV-SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS 85 (232)
T ss_pred EEEeCCEEeeccc-eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc
Confidence 3445445677777 77777888776 99999999999999999999999975422111 1111111
Q ss_pred CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 86 IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 123322 22222110000 001344455664 24677889999999999999999 68899999885
No 58
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=3.3e-11 Score=111.94 Aligned_cols=124 Identities=24% Similarity=0.305 Sum_probs=80.0
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg- 354 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+... .+++
T Consensus 9 ~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 9 TYGSVRALDDL-SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred EeCCeeeecce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 44445577777 77778888776 999999999999999999999999754322211 111111 1111
Q ss_pred CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 222222111000 0 011345555664 24677889999999999999999 68899999884
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=2.7e-11 Score=114.31 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=80.2
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA-- 350 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s-- 350 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+...
T Consensus 9 ~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 9 SFGGRTVLKGV-DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred EECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 44445677777 77778888776 999999999999999999999999754322111 111111
Q ss_pred CCCCCe-eeeEeeccc----ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGV----LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~----l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++.| .+.+.+... ... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 88 LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 122222 222211100 000 11244555664 23677889999999999999999 68889999885
No 60
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.20 E-value=1.6e-11 Score=122.94 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=83.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------cccccc--c
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTE--A 350 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~--s 350 (413)
+|...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|++|.+...... +.++.. .
T Consensus 3 ~~~~~~l~~v-s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 3 TGGKKGVNDA-DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred cCCceeEEee-EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3444456666 67777888877 99999999999999999999999975432221 111111 1
Q ss_pred CCCC-CeeeeEeecccc---------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVL---------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l---------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... .....+++..|+. ..++.+..||+||+||+.++|+| .|+.+.+|+|+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2343 333433321110 0113567777875 45788999999999999999999 68889999885
No 61
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=2.8e-11 Score=113.05 Aligned_cols=126 Identities=18% Similarity=0.314 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PV 352 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~ 352 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+... ..
T Consensus 7 ~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 7 VKKYGDFEAVRGV-SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred EEEECCEEeeece-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 3344545677777 77777888776 999999999999999999999999754322111 111111 11
Q ss_pred CCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.+... .. ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.+|+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2212 222211000 00 012345555664 23677899999999999999999 68888898885
No 62
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=4.1e-11 Score=120.76 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=88.7
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc-
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE- 349 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~- 349 (413)
.+-+..+.++...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+ ..+..
T Consensus 21 ~l~~v~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 21 EIRNLTKSFDGQHAVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 334555566655567777 77777788776 999999999999999999999999755332221 12211
Q ss_pred -cCCCC-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 -APVPG-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 -s~~pg-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+|+ |..+.+.+..... ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12344 2233333221100 012456666775 34688899999999999999999 78999999986
No 63
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=5.7e-12 Score=116.76 Aligned_cols=128 Identities=25% Similarity=0.327 Sum_probs=90.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE-------------- 349 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~-------------- 349 (413)
+..+.+|.-..++.+ ++...+|++.. +||||+|||||||+|+|.++|++|.+......+..+..
T Consensus 9 ~l~k~FGGl~Al~~V-sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 9 GLSKRFGGLTAVNDV-SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred cceeecCCEEEEece-eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 445677777778888 88888899887 99999999999999999999999986644333322211
Q ss_pred -cCCCCCe-eeeEeeccc--------c-------------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 -APVPGTT-LGIVRVEGV--------L-------------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 -s~~pgtT-~~~i~~~~~--------l-------------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+++.| ++.+.+... + ..-..+++..|+. ..+..+..||.|+|+++.|||+| .
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ 167 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcC
Confidence 1233322 222221100 0 0012467778886 56889999999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+...||+|.
T Consensus 168 P~lLLLDEPa 177 (250)
T COG0411 168 PKLLLLDEPA 177 (250)
T ss_pred CCEEEecCcc
Confidence 8889999873
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.19 E-value=3.2e-11 Score=119.95 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=82.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCC-C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVP-G 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~p-g 354 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|+.+|++|.+......+ ..+... -++ .
T Consensus 19 ~~L~~v-sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 578888 78888888776 999999999999999999999999754322221 111111 122 2
Q ss_pred CeeeeEeecccc---cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+||+| .|+.+.+|+|+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 333333322111 00 12456677775 45788999999999999999999 67888888874
No 65
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.19 E-value=4e-11 Score=106.93 Aligned_cols=100 Identities=26% Similarity=0.358 Sum_probs=66.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL 366 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l 366 (413)
..|+...+++.+ ++...+|+++. +|+||+|||||+++|+|..+|.+|.+......+...... +. ..
T Consensus 8 ~~~~~~~vl~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-------~~-----~~ 74 (163)
T cd03216 8 KRFGGVKALDGV-SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR-------DA-----RR 74 (163)
T ss_pred EEECCeEEEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH-------HH-----Hh
Confidence 344444577777 77778888776 999999999999999999999988543221111100000 00 00
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 367 PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 367 ~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.....++ .||+||+||+.++|++ .|+.+.+|+|+
T Consensus 75 ~~i~~~~-------------qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 75 AGIAMVY-------------QLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred cCeEEEE-------------ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0001111 1999999999999999 67889998885
No 66
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.19 E-value=1e-11 Score=115.30 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=79.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------ccccccccC-----CCCCeeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEAP-----VPGTTLGI 359 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s~-----~pgtT~~~ 359 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+..... .+..+.... ++.|..+.
T Consensus 12 ~~~l~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDV-SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 4567777 77777888766 9999999999999999999999997643221 122222111 12233333
Q ss_pred Eeecccc--------c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 360 VRVEGVL--------P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 360 i~~~~~l--------~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2221000 0 012345555664 34677899999999999999999 68899999884
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.18 E-value=3.3e-11 Score=112.23 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=79.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+... .++
T Consensus 17 ~~il~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGV-SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeee-EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4577777 77778888776 99999999999999999999999975432211 1111111 122
Q ss_pred C-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ |..+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence 2 2222222110000 012345555664 24677889999999999999999 67899999885
No 68
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.18 E-value=6.5e-11 Score=109.86 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=87.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
|.+-.+.-.++.+.++..| ++..+.|+-|+ +|+||+|||||++++++.+.|.+|.+.-........++
T Consensus 32 i~l~~v~v~r~gk~iL~~i-sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 32 IELKNVSVRRNGKKILGDL-SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred EEecceEEEECCEeecccc-ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 3444455567788999999 77777777666 99999999999999999999987753311111111110
Q ss_pred -c-----CC-CCCe-eeeEeec-----c----cc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 350 -A-----PV-PGTT-LGIVRVE-----G----VL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 350 -s-----~~-pgtT-~~~i~~~-----~----~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
| .+ +..+ ++.+.-- + .. ....++++..|+. ..++....||.||+|+++|||+| .|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 0 00 1111 1111100 0 00 1113566667776 56899999999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 191 ~LLiLDEP~ 199 (257)
T COG1119 191 ELLILDEPA 199 (257)
T ss_pred CEEEecCcc
Confidence 999999985
No 69
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.17 E-value=5.3e-11 Score=116.90 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=88.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-----------cccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-----------IVSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-----------~v~~~t 348 (413)
+.+.+..+.||...+++.+ ++...+|++++ +|+||+|||||+++|+|++.|++|.+..... .+..+.
T Consensus 8 i~i~~l~k~~~~~~~l~~v-sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGL-SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEEEeEEEEECCeEEEecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 4455566677766788888 88888888877 9999999999999999999999997543211 122222
Q ss_pred cc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .++. |..+.+.+...+.+ ...+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 11 1222 22233322111100 11345556664 34677899999999999999999 78889998874
No 70
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.17 E-value=6.4e-11 Score=109.92 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg 354 (413)
..++...+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... -++.
T Consensus 8 ~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 8 KRFGNVTALDDL-NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred EEECCeeeeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 344445677777 77778888776 999999999999999999999999754322111 111111 0111
Q ss_pred -CeeeeEeecccc---c-c-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P-A-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~-~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . . ...+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 87 MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 222222111000 0 0 01345555664 34677889999999999999999 68899999884
No 71
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.17 E-value=1.7e-11 Score=113.63 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=78.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC---CC-CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP---VP-GT 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~---~p-gt 355 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+...... +..+.... ++ .+
T Consensus 14 ~~il~~v-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDI-SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 4577777 77777888776 99999999999999999999999975432211 11222211 12 22
Q ss_pred eeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2232221100 00 011245555664 24677899999999999999999 68899999885
No 72
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.17 E-value=5.4e-11 Score=110.50 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=77.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------ccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------------HLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------------~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+. .+... .+++
T Consensus 15 ~~il~~i-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4577777 77778888776 9999999999999999999999997543221111 11111 1121
Q ss_pred -CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 11222211000 00 012344555664 23577889999999999999999 68999999885
No 73
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.17 E-value=1.9e-12 Score=116.34 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=89.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE----------- 349 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~----------- 349 (413)
...+..+.|+...+++.+ ++....|+++. +||||+||||.|.++.|+..+++|.+......+..++.
T Consensus 6 ~a~~l~K~y~kr~Vv~~V-sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 6 VAENLAKSYKKRKVVNDV-SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred EehhhhHhhCCeeeeeee-eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccc
Confidence 334556777888888888 78888899877 99999999999999999999999986544433333221
Q ss_pred ----cCCCCCee-eeEeecc--cc---c----c--ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 ----APVPGTTL-GIVRVEG--VL---P----A--QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 ----s~~pgtT~-~~i~~~~--~l---~----~--~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
|-+.+.|. +.+..-. .. . . .-.+++-.++. -.++....|||||++|+.|||+| .|+-..||
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 11122221 1111000 00 0 0 01456666665 35688899999999999999999 67888889
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+||
T Consensus 165 EPF 167 (243)
T COG1137 165 EPF 167 (243)
T ss_pred CCc
Confidence 887
No 74
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=7e-11 Score=106.31 Aligned_cols=106 Identities=20% Similarity=0.349 Sum_probs=66.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~ 371 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+.... ... .....+
T Consensus 13 ~~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~i~~------------ 77 (173)
T cd03230 13 KTALDDI-SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEV-KRRIGY------------ 77 (173)
T ss_pred eeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hhh-hccEEE------------
Confidence 3567777 77777787766 9999999999999999999999886543222111100 000 001111
Q ss_pred ccccccccCCCCCCCC--CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLLHPNQITTR--LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~~~~~~~~~--LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+...+.+.......+. ||+||+||+.+++++ .|+.+.+|+|+
T Consensus 78 ~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 78 LPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred EecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1111111111011111 999999999999999 78999999884
No 75
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=3e-11 Score=114.33 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=82.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CC
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PV 352 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~ 352 (413)
....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..+.+|.+...... +..+... .+
T Consensus 8 l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~ 86 (239)
T cd03296 8 VSKRFGDFVALDDV-SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALF 86 (239)
T ss_pred EEEEECCEEeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCccc
Confidence 34445545678887 77778888776 99999999999999999999999975432211 1111111 11
Q ss_pred CC-CeeeeEeecccc-------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGVL-------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~l-------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 87 RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 222322211000 0 011345555664 24677889999999999999999 67899999885
No 76
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.17 E-value=3.7e-11 Score=106.65 Aligned_cols=108 Identities=26% Similarity=0.282 Sum_probs=65.9
Q ss_pred hcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------ccccccccCC------CC
Q 015085 302 LAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------IVSHLTEAPV------PG 354 (413)
Q Consensus 302 l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------~v~~~t~s~~------pg 354 (413)
+....|+++. +|++|+|||||+|.|+|...|.+|.+..... ...|+|+... ||
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 3445566555 9999999999999999999999997543322 2222222110 11
Q ss_pred CeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~~~~ 413 (413)
..++..... ......--.|+. ..++.+..|||||+|||++||.+.. =...||+||
T Consensus 100 LkL~a~~r~----~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 100 LKLNAEQRE----KVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred cccCHHHHH----HHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 111110000 000122233554 3468999999999999999999943 345667765
No 77
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.16 E-value=5.5e-11 Score=120.59 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=86.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~ 349 (413)
+.+...+|+...+++.+ ++...+|++++ +|+||+||||||++|+|+++|.+|.+...... +..+..
T Consensus 6 ~~nls~~y~~~~vL~~v-s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGV-DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred EeeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 34445567767788888 88888899877 99999999999999999999999975432211 111111
Q ss_pred c---CCCCCeeeeEeecc-----cc---cc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 A---PVPGTTLGIVRVEG-----VL---PA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 s---~~pgtT~~~i~~~~-----~l---~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
. .+..+..+.+.+.. .+ .. ..++++..|+. ..++....||+||+||+.++|+| .|+.+.||
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1 01112222221100 00 00 12345566665 34678899999999999999999 67888888
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|.
T Consensus 165 EPt 167 (402)
T PRK09536 165 EPT 167 (402)
T ss_pred CCc
Confidence 874
No 78
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.16 E-value=7e-11 Score=111.55 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=79.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg 354 (413)
.++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|.+|.+......+ ..+... ..+.
T Consensus 10 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 10 AYGARRALDDV-SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLD 88 (236)
T ss_pred EECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCccc
Confidence 34444577777 77777888776 999999999999999999999999754322111 111111 1111
Q ss_pred -CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+....... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 89 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 89 LSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2222221110000 012345555664 24677889999999999999999 67899999885
No 79
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.16 E-value=4.3e-11 Score=111.34 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=78.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG- 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg- 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .++.
T Consensus 17 ~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNL-NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 477777 77778888776 999999999999999999999999754322111 111111 1122
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22222221100 00 012345556664 34677899999999999999999 68899999885
No 80
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.9e-11 Score=109.75 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=73.2
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------------ccccccccCCC
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------------IVSHLTEAPVP 353 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------------~v~~~t~s~~p 353 (413)
...+.|++.+ ++....|++.. +|+||+|||||++.|+|.+.|++|.+.-... .+..-+.-.+|
T Consensus 11 ~~Gr~ll~~v-sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 11 LAGRRLLDGV-SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred eecceeccCc-ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 3456788888 77777788777 9999999999999999999999987432111 11122222344
Q ss_pred CCeeeeEeecccccc---------------cccccccccccCCCCCCCCCCHHHHHHHHHhhhhc
Q 015085 354 GTTLGIVRVEGVLPA---------------QAKLFDTPGLLHPNQITTRLTREEQKLVNINKELK 403 (413)
Q Consensus 354 gtT~~~i~~~~~l~~---------------~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~ 403 (413)
-|..+.+.+- ..+. .+...|.-|+.. +.+..|||||+|||.++|.|.
T Consensus 90 Ftv~eVV~mG-r~p~~~g~~~~e~~~i~~~ala~~d~~~la~--R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 90 FTVQEVVQMG-RIPHRSGREPEEDERIAAQALAATDLSGLAG--RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred eEHHHHHHhc-ccccccCCCchhhHHHHHHHHHHcChhhhhc--cchhhcCchHHHHHHHHHHHH
Confidence 4444443321 1111 012355566654 678889999999999999994
No 81
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.16 E-value=5.3e-11 Score=111.11 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=78.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+...... +..+... -++.
T Consensus 19 ~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 19 RVLKGV-SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred EeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 477777 77778888776 99999999999999999999999975432111 1111111 1122
Q ss_pred -CeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+.. ... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 169 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 2222222100 000 012355556664 34677899999999999999999 68899999885
No 82
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.16 E-value=3e-11 Score=115.70 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=86.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------cccccccc--
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEA-- 350 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s-- 350 (413)
+.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|++.+++|.+..... .+..+...
T Consensus 13 l~i~~l~~~~~~~~il~~i-sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQL-DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 3344445556656688888 77778888776 9999999999999999999999997542211 11111111
Q ss_pred CCCC-CeeeeEeeccc--c-ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGV--L-PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~--l-~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+.+... . .....+++..|+. ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1122 22333322110 0 0112345556664 34677899999999999999999 67889999884
No 83
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=9.2e-11 Score=109.51 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=78.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------ccccccc--CCCC-CeeeeEe
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------VSHLTEA--PVPG-TTLGIVR 361 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------v~~~t~s--~~pg-tT~~~i~ 361 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+...... +..+... .++. |..+.+.
T Consensus 17 ~~il~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDI-SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEece-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 4577777 77778888776 99999999999999999999999975432211 1111111 1121 2222222
Q ss_pred eccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 362 VEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 362 ~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..... ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 110000 012345555664 24577889999999999999999 67899999885
No 84
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.15 E-value=7.2e-11 Score=117.50 Aligned_cols=132 Identities=15% Similarity=0.197 Sum_probs=88.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t 348 (413)
+.+....+.||...+++.+ ++....|++++ +|+||+||||||++|+|++.|++|.+...... +..+.
T Consensus 42 i~i~nl~k~y~~~~~l~~i-s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 4445556677777788888 78888888877 99999999999999999999999975432211 11111
Q ss_pred cc--CCCCCe-eeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .++..| .+.+.+.....+ ...+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 112222 232221110100 01345556665 35678899999999999999999 68899999874
No 85
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=6.6e-11 Score=106.13 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=77.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeec--------
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVE-------- 363 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~-------- 363 (413)
..+++.+ ++....|+.++ +|++|||||||+|.++|...|..|.+..+.+.+ .-||-.++.+-+.
T Consensus 18 ~~~le~v-sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i------~gPgaergvVFQ~~~LlPWl~ 90 (259)
T COG4525 18 RSALEDV-SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI------EGPGAERGVVFQNEALLPWLN 90 (259)
T ss_pred hhhhhcc-ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec------cCCCccceeEeccCccchhhH
Confidence 4467777 77777787666 999999999999999999999999755333222 1133333332221
Q ss_pred --------ccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 --------GVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 --------~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+ ...++-..|+. ..++++-.||||++||+-+||+| .|+-..||+||
T Consensus 91 ~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 91 VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 11110 01334455665 35788899999999999999999 57778888876
No 86
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.15 E-value=4.3e-11 Score=108.38 Aligned_cols=113 Identities=21% Similarity=0.340 Sum_probs=75.3
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA 368 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~ 368 (413)
|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+......+...... .....+.+ ...
T Consensus 9 ~~~~~~l~~~-~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~----~~~~~i~~---~~q 80 (180)
T cd03214 9 YGGRTVLDDL-SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK----ELARKIAY---VPQ 80 (180)
T ss_pred ECCeeeEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH----HHHHHHhH---HHH
Confidence 3334577777 77777888776 999999999999999999999999654322111110000 00000111 000
Q ss_pred ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++....||+||+||++++|++ .|+.+.+|+|+
T Consensus 81 ---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 81 ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred ---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 44555654 23567889999999999999999 78899999885
No 87
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=1.2e-10 Score=111.45 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=82.0
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------cccccc--CCCC-C
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------SHLTEA--PVPG-T 355 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------~~~t~s--~~pg-t 355 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+... .++. |
T Consensus 8 ~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 8 YADYGGKPALEDI-NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRN 86 (255)
T ss_pred EEEeCCeeeEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCc
Confidence 3445445677777 77778888776 999999999999999999999999764322111 111111 1122 2
Q ss_pred eeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222221100 00 012355666664 23577889999999999999999 68889999884
No 88
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=7.4e-11 Score=112.61 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=83.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------ccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTE 349 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~ 349 (413)
......++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+..
T Consensus 9 ~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 87 (255)
T PRK11300 9 SGLMMRFGGLLAVNNV-NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQ 87 (255)
T ss_pred eeEEEEECCEEEEEee-eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEecc
Confidence 3444455555678888 77778888877 999999999999999999999999754222111 10111
Q ss_pred --cCCCCCe-eeeEeecc-------------------cc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhh
Q 015085 350 --APVPGTT-LGIVRVEG-------------------VL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~-------------------~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
..+++.| .+.+.+.. .. .....+++..|+. ..++....||+||+||+.++++
T Consensus 88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 167 (255)
T PRK11300 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC 167 (255)
T ss_pred CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence 1123322 22211100 00 0011234556664 3467789999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
+ .|+.+.||+|+
T Consensus 168 l~~~p~llllDEPt 181 (255)
T PRK11300 168 MVTQPEILMLDEPA 181 (255)
T ss_pred HhcCCCEEEEcCCc
Confidence 9 68999999885
No 89
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.15 E-value=8.3e-11 Score=111.38 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------------cccc--c
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------------HLTE--A 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------------~~t~--s 350 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.|.+|.+......+. .+.. .
T Consensus 9 ~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 87 (242)
T TIGR03411 9 SVSFDGFKALNDL-SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT 87 (242)
T ss_pred EEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc
Confidence 3445444577777 77778888876 9999999999999999999999997543221111 1111 1
Q ss_pred CCCCCe-eeeEeeccc--------c---------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 351 PVPGTT-LGIVRVEGV--------L---------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~--------l---------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
-+++.| .+.+.+... + .....+++..|+. ..++....||+||+|++++++++ .|+.+.|
T Consensus 88 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 88 VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 123322 222211000 0 0012345556665 34677889999999999999999 5788999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (242)
T TIGR03411 168 DEPV 171 (242)
T ss_pred cCCc
Confidence 8884
No 90
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.15 E-value=9.2e-11 Score=112.36 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=84.1
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s~ 351 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+....
T Consensus 7 ~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 7 NLSVRLGGRTLLDDV-SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred eEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 344455555678888 77778888776 999999999999999999999999754322111 1111111
Q ss_pred ---CCCCeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--------CCccccC
Q 015085 352 ---VPGTTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--------PRTYRIK 410 (413)
Q Consensus 352 ---~pgtT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--------~~~~~l~ 410 (413)
...|..+.+.+..... ....+++..|+. ..++....||+||+||+.+++++. |+.+.||
T Consensus 86 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD 165 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165 (258)
T ss_pred cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 1123333322210000 012345556664 346788999999999999999996 7899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 166 EPt 168 (258)
T PRK13548 166 EPT 168 (258)
T ss_pred CCc
Confidence 885
No 91
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.14 E-value=7.4e-11 Score=105.52 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=67.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~ 371 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+..... ....++.....+. ...
T Consensus 14 ~~~l~~i-~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~-~~t 79 (166)
T cd03223 14 RVLLKDL-SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLP-LGT 79 (166)
T ss_pred CeeeecC-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCccc-ccc
Confidence 3577777 77777888766 9999999999999999999999986442210 0011111100000 011
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..-+. ....||+||+||+.++|++ .|+.+.+|+|+
T Consensus 80 v~~nl~~~----~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 80 LREQLIYP----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred HHHHhhcc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 11111000 3578999999999999999 78889999884
No 92
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=6.3e-11 Score=109.79 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=80.7
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------ccccccc--CCCCCe
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------VSHLTEA--PVPGTT 356 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------v~~~t~s--~~pgtT 356 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+++.|
T Consensus 8 ~~~~~~~~l~~v-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 8 KRFGRVTALDDI-SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred EEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCc
Confidence 344445577777 77777888766 99999999999999999999999975432211 1112111 122322
Q ss_pred -eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 -LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 -~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 87 VIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222111000 0 012345555664 23567889999999999999999 68899999885
No 93
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.14 E-value=8.3e-11 Score=115.35 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=85.0
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s 350 (413)
+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +..+...
T Consensus 7 ~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 85 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDL-SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQF 85 (303)
T ss_pred EEeEEEEeCCeEEEcce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecc
Confidence 34445566656688888 78888888777 99999999999999999999999975432211 1111111
Q ss_pred --CCCCCe-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++..| .+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|.
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 112222 222221100 000 01245556664 34677899999999999999999 68889999884
No 94
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.14 E-value=3.7e-11 Score=117.79 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=80.9
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc--CCCCCe
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA--PVPGTT 356 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s--~~pgtT 356 (413)
|...+++.+ ++...+|++++ +|+||+|||||+++|+|++.|++|.+...... +..+... .+++.|
T Consensus 4 ~~~~~l~~v-s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 4 GDFKAVDGV-NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CCeeEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 334566777 77777888776 99999999999999999999999975432211 1111111 122222
Q ss_pred -eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 -LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 -~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+...+. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22222111000 012356666775 34678899999999999999999 68888998884
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.14 E-value=7.3e-11 Score=110.07 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=78.1
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC-Cee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG-TTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg-tT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++. |..
T Consensus 15 ~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDL-SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 4577777 77778888776 999999999999999999999999754322111 111111 1111 222
Q ss_pred eeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 22221100 000 12345555664 33577889999999999999999 78889999885
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=4.9e-11 Score=115.00 Aligned_cols=125 Identities=23% Similarity=0.338 Sum_probs=80.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA 350 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s 350 (413)
+.+|...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+...
T Consensus 32 ~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 32 KKTGQTVGVNDV-SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hhcCCceEeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 345555567777 67777788777 999999999999999999999999754322111 111111
Q ss_pred --CCCC-CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPG-TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+.+... ... ...+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt 188 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1122 22222211100 000 11345555664 34677899999999999999999 68889999885
No 97
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.14 E-value=7.3e-11 Score=123.85 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=85.8
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t 348 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+.
T Consensus 14 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 14 ARSISKQYSGVEVLKGI-DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred EEeEEEEeCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 33445566656678888 78888888766 999999999999999999999999764322111 1111
Q ss_pred cc--CCCCCe-eeeEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .+++.| .+.+.+..... ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred ccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 11 112212 22222110000 112345666775 34678899999999999999999 68999999885
No 98
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.2e-11 Score=112.76 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc----------------ccccccccc--CCCCCe-eeeEeeccc--
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK----------------NIVSHLTEA--PVPGTT-LGIVRVEGV-- 365 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~----------------~~v~~~t~s--~~pgtT-~~~i~~~~~-- 365 (413)
|-..++|.+|+|||||||+|+|+.+|+.|.+.-+. +.+.++.+. -+|..| ++++.+-..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 44455999999999999999999999999754221 111121111 133333 233332110
Q ss_pred -ccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 -LPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 -l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
......++++-||.. .++++..|||||+|||+|.|+| .|+...+|+||
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPL 156 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCch
Confidence 011235678888863 4799999999999999999999 78889999886
No 99
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=7.1e-11 Score=117.80 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=80.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... -++.
T Consensus 18 ~~il~~v-sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNV-SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 4577887 78888888776 99999999999999999999999975432211 1111111 1121
Q ss_pred -CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 22233222100 00 012355666775 34677899999999999999999 68899999884
No 100
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=7.4e-11 Score=103.76 Aligned_cols=111 Identities=27% Similarity=0.351 Sum_probs=74.1
Q ss_pred hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccc----------------ccccccccC--CCC-
Q 015085 295 LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN----------------IVSHLTEAP--VPG- 354 (413)
Q Consensus 295 Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~----------------~v~~~t~s~--~pg- 354 (413)
++..+ ++...+|+ +.+||++|+|||||+-.|+|+..+++|++..... .+..+.+|. +|.
T Consensus 25 IL~~V-~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 25 ILKGV-ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred Eeecc-eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 34444 45555565 5559999999999999999999999998652211 112222221 233
Q ss_pred CeeeeEeeccccccc---------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcCCc
Q 015085 355 TTLGIVRVEGVLPAQ---------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKPRT 406 (413)
Q Consensus 355 tT~~~i~~~~~l~~~---------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~~~ 406 (413)
|.++.+..+..+.+. ..++...|+. +-..++..|||||||||+++|++.+++
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 334555554444331 2456677886 557889999999999999999996554
No 101
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.14 E-value=7e-11 Score=111.38 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=79.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+... -+
T Consensus 9 ~~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 9 RFGGLVALDDV-SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLF 87 (236)
T ss_pred EECCEEEecCc-eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccc
Confidence 34444577777 77777888776 99999999999999999999999975422111 1111111 12
Q ss_pred CCCe-eeeEeeccccc-------------------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 353 PGTT-LGIVRVEGVLP-------------------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~-------------------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 167 (236)
T cd03219 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLL 167 (236)
T ss_pred cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3322 22221110000 012345556664 34677889999999999999999 6788888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (236)
T cd03219 168 DEPA 171 (236)
T ss_pred cCCc
Confidence 8874
No 102
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.13 E-value=1e-10 Score=107.74 Aligned_cols=119 Identities=20% Similarity=0.156 Sum_probs=70.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCcccccccccccccCCCCCeeeeEeeccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV 365 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~ 365 (413)
.++...+++.+ ++....|++++ +|+||+|||||+++|+|. ..+.+|.+......+..............++.....
T Consensus 9 ~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (200)
T cd03217 9 SVGGKEILKGV-NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP 87 (200)
T ss_pred EeCCEEeeecc-ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh
Confidence 34434577777 77777888776 999999999999999999 468888654332222111100000000111111000
Q ss_pred ccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.....+.+. -......||+||+|++.+++++ .|+.+.+|+|+
T Consensus 88 ~~~~~~~~~~-----l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 88 EIPGVKNADF-----LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred hccCccHHHH-----HhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0000111110 0233468999999999999999 68888888874
No 103
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.13 E-value=1e-10 Score=105.27 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=66.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+.......+ ...+.+ ......+
T Consensus 16 ~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~---~~q~~~~ 87 (173)
T cd03246 16 PVLRNV-SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL----GDHVGY---LPQDDEL 87 (173)
T ss_pred cceeee-EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH----HhheEE---ECCCCcc
Confidence 467777 67777888776 99999999999999999999999965432221111100000 001111 0111112
Q ss_pred cccccccCCCCCCCC-CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTR-LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. + ...+. ||+||+||+++++++ .|+.+.+|+|+
T Consensus 88 ~~--~-----tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 88 FS--G-----SIAENILSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred cc--C-----cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 21 1 11111 999999999999999 68888898885
No 104
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1e-10 Score=110.27 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=79.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++++|.+...... +..+... -++.
T Consensus 23 ~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 23 DVLHNV-SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 477777 77778888766 99999999999999999999999975432211 1111111 1122
Q ss_pred -CeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.. ... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 173 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPT 173 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2223222110 000 012355666764 24577889999999999999999 68999999885
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=9.7e-11 Score=111.01 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=80.3
Q ss_pred ecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc--CC
Q 015085 289 NWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s--~~ 352 (413)
.|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .+
T Consensus 9 ~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (242)
T cd03295 9 RYGGGKKAVNNL-NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87 (242)
T ss_pred EeCCcceEeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcccc
Confidence 4443 4577777 77778888776 999999999999999999999999754222111 111111 12
Q ss_pred CC-CeeeeEeecccc---c------cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGVL---P------AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~l---~------~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++ |..+.+.+...+ . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 88 PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 22 222222211000 0 012345555665 24677889999999999999999 67889999884
No 106
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.13 E-value=9e-11 Score=106.06 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=60.7
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL 366 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l 366 (413)
+.+|...++..+ +....|+++. +|+||+|||||+++|+|+.+|++|.+... |.....+
T Consensus 8 ~~~~~~~~l~~~--~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-------------g~~i~~~------ 66 (177)
T cd03222 8 KRYGVFFLLVEL--GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD-------------GITPVYK------ 66 (177)
T ss_pred EEECCEEEEccC--cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC-------------CEEEEEE------
Confidence 344444444443 3445666665 99999999999999999999998853311 1111110
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 367 PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 367 ~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .. .||+||+||+.+++++ .|+.+.+|+|+
T Consensus 67 ------~q---------~~-~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 67 ------PQ---------YI-DLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ------cc---------cC-CCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 00 00 1999999999999999 68888888874
No 107
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.13 E-value=1.2e-10 Score=112.36 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=82.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccc
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTE 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~ 349 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+......+ ..+..
T Consensus 13 l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q 91 (269)
T PRK11831 13 VSFTRGNRCIFDNI-SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQ 91 (269)
T ss_pred eEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEec
Confidence 33455555677777 78778888766 999999999999999999999999754322111 11111
Q ss_pred c--CCCC-CeeeeEeeccc----ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGV----LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~----l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. .+++ |..+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 1233 22222221100 000 01234555664 24677899999999999999999 68899999885
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=99.13 E-value=9.4e-11 Score=109.59 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=78.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC--CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP--VPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~--~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++++|.+......+ ..+.... ++.
T Consensus 15 ~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGV-TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4577777 77778888776 999999999999999999999999754322111 1111110 122
Q ss_pred -CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+... ... ...+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 22222221100 000 01345555664 23577889999999999999999 68899999885
No 109
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.13 E-value=7e-11 Score=111.02 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc--C
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA--P 351 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s--~ 351 (413)
..|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.++|.+|++......+ ..+... -
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 8 VYYGQSHILRGV-SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred EEeCCeEEecce-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 344445677777 77778888777 999999999999999999999999754322111 111111 1
Q ss_pred CCCCe-eeeEeeccccc--c----ccccccccc-cc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVLP--A----QAKLFDTPG-LL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l~--~----~~~liDtpG-l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++.| .+.+.+..... . ...+++..+ +. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 12212 22221110000 0 022344444 22 24677889999999999999999 68899999884
No 110
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.12 E-value=7.3e-11 Score=110.18 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=78.4
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+
T Consensus 9 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (222)
T cd03224 9 GYGKSQILFGV-SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIF 87 (222)
T ss_pred ecCCeeEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccC
Confidence 44444577777 77778888777 99999999999999999999999975422211 1111111 12
Q ss_pred CCCe-eeeEeeccccc--c-----cccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGVLP--A-----QAKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~--~-----~~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+..... . ...+++.. ++. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 88 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 88 PELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred CCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 3322 22222110000 0 01233333 332 23577888999999999999999 68899999884
No 111
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.12 E-value=8.6e-11 Score=109.45 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=78.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC-Ceee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG-TTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg-tT~~ 358 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .+++ +..+
T Consensus 19 ~il~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGV-SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 577777 77777788766 999999999999999999999999754322111 111111 1122 2222
Q ss_pred eEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.... . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 22211000 0 012355666765 34677899999999999999999 78888898884
No 112
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.4e-10 Score=109.83 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=82.1
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------ccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~t~s- 350 (413)
+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+......+. .+...
T Consensus 8 ~l~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 8 EVSYSSFGKEILKDI-SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred eEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 334445545677777 77777888776 9999999999999999999999997543221111 11111
Q ss_pred -CCCCCeeeeEeeccccc-----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTTLGIVRVEGVLP-----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT~~~i~~~~~l~-----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+..+.+.+..... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 87 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 87 HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred hhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11222222222110000 012345555663 24577889999999999999999 68889999884
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=7.4e-11 Score=109.40 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=78.9
Q ss_pred eecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg 354 (413)
..++...+++.+ ++....|.+.++|+||+|||||+++|+|++++.+|.+......+ ..+... .+++
T Consensus 8 ~~~~~~~~l~~v-s~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 8 KRYGKKRALDGV-SLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred EEECCEEEEcce-eEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 344444577777 66666674445999999999999999999999999754322111 111111 1223
Q ss_pred Ce-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 87 FTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 222221100 00 012345555664 23577899999999999999999 68888898884
No 114
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.12 E-value=4.3e-11 Score=113.32 Aligned_cols=125 Identities=24% Similarity=0.275 Sum_probs=80.7
Q ss_pred eecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc
Q 015085 288 KNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA 350 (413)
Q Consensus 288 ~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s 350 (413)
..|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 9 ~~~~~~~~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 87 (243)
T TIGR02315 9 KVYPNGKQALKNI-NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87 (243)
T ss_pred eecCCCcceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCC
Confidence 3444 45577887 77778888776 99999999999999999999999975432211 1111111
Q ss_pred --CCCC-CeeeeEeeccc-----------c-c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 --PVPG-TTLGIVRVEGV-----------L-P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~-----------l-~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
-++. +..+.+.+... . . ....+++..|+. ..++....||+||+||+++++++ .|+.+
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 88 YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222 22222221000 0 0 012344555664 34677889999999999999999 68899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 168 llDEPt 173 (243)
T TIGR02315 168 LADEPI 173 (243)
T ss_pred EEeCCc
Confidence 999885
No 115
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.12 E-value=3.9e-11 Score=110.23 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=80.0
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVP 353 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~p 353 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+ ..+... ..+
T Consensus 8 ~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (198)
T TIGR01189 8 CSRGERMLFEGL-SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKP 86 (198)
T ss_pred EEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCccccc
Confidence 345555677777 77778888776 999999999999999999999999754322111 111110 011
Q ss_pred C-CeeeeEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+..... ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 1122221100000 012344555664 24577899999999999999999 68888888874
No 116
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.12 E-value=8.4e-11 Score=108.76 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=79.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg- 354 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++.
T Consensus 9 ~~~~~~~l~~~-~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (208)
T cd03268 9 TYGKKRVLDDI-SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNL 87 (208)
T ss_pred EECCeEeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccC
Confidence 34445677777 77777888776 999999999999999999999999754322211 111111 1111
Q ss_pred CeeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+++++++ .|+.+.+|+|+
T Consensus 88 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 88 TARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 222222111000 0 112344555664 23577889999999999999999 57889999885
No 117
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=9.7e-11 Score=110.27 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=77.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG- 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg- 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .+++
T Consensus 19 ~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDV-SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 577777 77778888777 999999999999999999999999754322111 111111 1222
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 22222221100 00 012344555664 24577889999999999999999 67889999885
No 118
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.12 E-value=1.4e-10 Score=107.10 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=81.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------ccccc--CCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTEA--PVP 353 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~s--~~p 353 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+. .+... ..+
T Consensus 9 ~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204)
T PRK13538 9 CERDERILFSGL-SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKT 87 (204)
T ss_pred EEECCEEEEecc-eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCc
Confidence 344545678887 78788888777 9999999999999999999999997543322111 01000 011
Q ss_pred C-CeeeeEeeccccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 88 ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 2222222110000 012345556664 34677899999999999999999 68888888874
No 119
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.12 E-value=3.2e-11 Score=114.73 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=72.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC---CCCCeeeeEeeccc-ccc----ccccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP---VPGTTLGIVRVEGV-LPA----QAKLFDT 375 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~---~pgtT~~~i~~~~~-l~~----~~~liDt 375 (413)
..|++++ +|+||+|||||+++|+|.+.|.+|.+......+..+.... ..+|..+.+..... ... ..++++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4567665 9999999999999999999999997654332333332221 12333333221000 000 1235555
Q ss_pred cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 376 PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 376 pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6664 34577889999999999999999 68899999885
No 120
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.12 E-value=2.9e-11 Score=110.36 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=76.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccccC----CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEAP----VPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s~----~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++++|.+......+ ..+...+ ++.
T Consensus 6 ~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 6 EVLKGL-NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred ceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 456666 67777788777 999999999999999999999999754322111 1111111 112
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22222221100 00 011244445664 34677899999999999999999 67889999885
No 121
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4.6e-11 Score=112.93 Aligned_cols=125 Identities=25% Similarity=0.325 Sum_probs=80.6
Q ss_pred eecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc
Q 015085 288 KNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA 350 (413)
Q Consensus 288 ~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s 350 (413)
..|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 8 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 86 (241)
T cd03256 8 KTYPNGKKALKDV-SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86 (241)
T ss_pred EecCCccEEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEccc
Confidence 34443 4577777 77778888777 99999999999999999999999975432211 1111111
Q ss_pred --CCCC-CeeeeEeeccc------------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 --PVPG-TTLGIVRVEGV------------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~------------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.++. |..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 87 FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222 22222211000 00 011345556664 34677889999999999999999 68899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 167 llDEPt 172 (241)
T cd03256 167 LADEPV 172 (241)
T ss_pred EEeCcc
Confidence 999884
No 122
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.12 E-value=5.9e-11 Score=109.91 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=81.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------ccccc--CC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------HLTEA--PV 352 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------~~t~s--~~ 352 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+.+|.+......+. .+... .+
T Consensus 7 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (207)
T PRK13539 7 DLACVRGGRVLFSGL-SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMK 85 (207)
T ss_pred eEEEEECCeEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCC
Confidence 344455555677777 77778888776 9999999999999999999999997543221111 11000 01
Q ss_pred C-CCeeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 P-GTTLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 p-gtT~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ .+..+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 86 PALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 1222222110000 0 012345555664 23567789999999999999999 67888888874
No 123
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=3.6e-11 Score=113.54 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=77.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
..++.+ ++...+|++.. ||.+|+|||||-++|+|+..|++|.+......+..+. .........++
T Consensus 27 ~avd~V-sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------------~~~~~~~v~el 92 (268)
T COG4608 27 KAVDGV-SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------------KEERRERVLEL 92 (268)
T ss_pred EEecce-eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------hhHHHHHHHHH
Confidence 345555 67777888766 9999999999999999999999997664443332221 00011224567
Q ss_pred ccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 373 FDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 373 iDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
++..|+. ..+++.++|||||+||+.|||+| +|+.+..|+|
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 8888875 35799999999999999999999 6777777665
No 124
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.11 E-value=8.1e-11 Score=108.59 Aligned_cols=124 Identities=24% Similarity=0.286 Sum_probs=80.1
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc--
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE-- 349 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~-- 349 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+..
T Consensus 7 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 7 KFGDKIILDDL-NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred EECCEEEEece-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 34434577777 77777788766 999999999999999999999999754332221 11111
Q ss_pred cCCCC-CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APVPG-TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~pg-tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++. |..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 86 ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11222 22222221000 00 012345555664 34677889999999999999999 78899999884
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.11 E-value=1.9e-10 Score=105.86 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------cccc--cCC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTE--APV 352 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~--s~~ 352 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|..++++|.+......+. .+.. ...
T Consensus 8 ~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 8 DFDYHDQPLLQQI-SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred EEEeCCeeEEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 3445545678888 77778888777 9999999999999999999999997543322111 1111 111
Q ss_pred CCCe-eeeEeeccccc----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGVLP----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+..... ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 87 ~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 87 PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222 23222110000 112244444553 23566788999999999999999 68888888874
No 126
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.10 E-value=1.6e-10 Score=108.38 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=84.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s- 350 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 12 ~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 12 NVGYLAGDAKILNNI-SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90 (225)
T ss_pred ccEEeeCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence 344455555678887 78888888777 999999999999999999999999754322111 111111
Q ss_pred -CCCCCeeeeEeeccc---cc----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTTLGIVRVEGV---LP----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT~~~i~~~~~---l~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-++.+..+.+.+... .. ....+++..|+. ..++....||+||+|++.++++| .|+.+.+|+|+
T Consensus 91 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 91 TLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred ccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 112222222221000 00 012456666774 24677899999999999999999 78889999885
No 127
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.3e-10 Score=104.35 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=66.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+.......+ ...+.+ ......+
T Consensus 16 ~~l~~i-~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~---~~~~~~~ 87 (171)
T cd03228 16 PVLKDV-SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL----RKNIAY---VPQDPFL 87 (171)
T ss_pred ccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH----HhhEEE---EcCCchh
Confidence 577777 77777888777 99999999999999999999998865432211111000000 000111 0111112
Q ss_pred cccccccCCCCCCCC-CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTR-LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. ...+. ||+||+||+.+++++ .|+.+.||+|+
T Consensus 88 ~~~-------t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 88 FSG-------TIRENILSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred ccc-------hHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 221 11111 999999999999999 78899999885
No 128
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=4.1e-11 Score=106.08 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=85.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------------ 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------------ 349 (413)
.....+.||..+++..+ ++....|+++- +|.+|+||||++++|.-+..|..|.+.-....+...+.
T Consensus 9 v~dlHK~~G~~eVLKGv-SL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 9 VEDLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hhHHHhhcccchhhcce-eeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 34456788888999888 78778888766 99999999999999999999999875422111111000
Q ss_pred ---------------cCCCCCe-eee-Ee----ecccc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 350 ---------------APVPGTT-LGI-VR----VEGVL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 350 ---------------s~~pgtT-~~~-i~----~~~~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
.-|+..| ++. +. +.+.- .....+++..|+. +.+.++..||||+|||++|||+|
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL 167 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH
Confidence 0111111 111 00 00000 0012467778887 56789999999999999999998
Q ss_pred --cCCccccCCC
Q 015085 403 --KPRTYRIKVS 412 (413)
Q Consensus 403 --~~~~~~l~~~ 412 (413)
.|++...|+|
T Consensus 168 ameP~vmLFDEP 179 (256)
T COG4598 168 AMEPEVMLFDEP 179 (256)
T ss_pred hcCCceEeecCC
Confidence 5777777766
No 129
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.10 E-value=9.4e-11 Score=105.91 Aligned_cols=108 Identities=24% Similarity=0.345 Sum_probs=69.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+... ... ....+.+ ......+
T Consensus 16 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~----~~~~i~~---~~q~~~~ 86 (178)
T cd03247 16 QVLKNL-SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKA----LSSLISV---LNQRPYL 86 (178)
T ss_pred cceEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHH----HHhhEEE---EccCCee
Confidence 477777 77778888776 999999999999999999999999654322211110 000 0000111 0111122
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. .-.+.+...||+||+|++.++|++ .|+.+.+|+|+
T Consensus 87 ~~~---tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 87 FDT---TLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ecc---cHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 211 001122678999999999999999 78889888874
No 130
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.2e-10 Score=110.33 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=81.2
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA- 350 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s- 350 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 9 l~~~~~~~~~l~~~-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 9 LAKAYKGRRVVEDV-SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred cEEEeCCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 33445545677777 77778888776 99999999999999999999999975422211 1111111
Q ss_pred -CCCCCe-eeeEeeccccc----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTT-LGIVRVEGVLP----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT-~~~i~~~~~l~----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 88 SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 112222 22222110000 011234444554 23577889999999999999999 68889999884
No 131
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=6e-11 Score=114.46 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=81.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTE 349 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~ 349 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+..
T Consensus 6 ~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 84 (271)
T PRK13638 6 DLWFRYQDEPVLKGL-NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQ 84 (271)
T ss_pred EEEEEcCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEee
Confidence 334455555688888 78878888776 999999999999999999999999754332221 11111
Q ss_pred cC---CCCCe-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 AP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~---~pgtT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ...+| .+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt 164 (271)
T PRK13638 85 DPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPT 164 (271)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 10 01111 111111000 000 01244445654 24577899999999999999999 78899999884
No 132
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.5e-10 Score=111.23 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=86.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~ 347 (413)
+.+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+
T Consensus 8 l~i~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENL-TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEEEECCEEEeeec-ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4445555666656688888 78888888776 999999999999999999999999754322111 111
Q ss_pred ccc--CCCCCe-eeeEeecc--c------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTT-LGIVRVEG--V------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~--~------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .+++.| .+.+.... . .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 111 112222 22221100 0 00 012344555664 34678899999999999999999 689999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 167 lDEPt 171 (265)
T PRK10253 167 LDEPT 171 (265)
T ss_pred EeCcc
Confidence 99884
No 133
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1e-10 Score=118.54 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=78.5
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC-C
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG-T 355 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg-t 355 (413)
++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+...... +.++... -++. |
T Consensus 44 L~~i-sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 44 VKDA-SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEeE-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 5555 66667788776 99999999999999999999999975432211 1111111 1233 2
Q ss_pred eeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+.... . ....+++..|+. ..++.+..||+||+||+.++|+| .|+.+.||+|+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 23333221100 0 012356667775 35788899999999999999999 68899999985
No 134
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.09 E-value=1.1e-10 Score=107.68 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=76.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~~l~~-- 368 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+.... .+..+... .+++|..+.+.+......
T Consensus 19 ~il~~~-s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDI-NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 577787 78788888777 999999999999999999999999765332 22222221 124444444433211110
Q ss_pred cccc---------cccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKL---------FDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~l---------iDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.... ++.. |+. ..+.....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0011 1111 211 12345688999999999999999 68888888874
No 135
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.09 E-value=1.8e-10 Score=100.60 Aligned_cols=87 Identities=25% Similarity=0.318 Sum_probs=63.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
.++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+..... ..+.+
T Consensus 9 ~~~~~~~l~~~-~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~~i~~----- 67 (144)
T cd03221 9 TYGGKLLLKDI-SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------VKIGY----- 67 (144)
T ss_pred EECCceEEEee-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------EEEEE-----
Confidence 34434567776 67777888776 9999999999999999999988884321110 00111
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. .||+||+||+.+++++ .|+.+.+|+|+
T Consensus 68 ----~~-------------~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 68 ----FE-------------QLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ----Ec-------------cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 1999999999999999 67888888875
No 136
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.09 E-value=1.2e-10 Score=105.55 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecc---cccccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG---VLPAQA 370 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~---~l~~~~ 370 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+........-.....++.... .+....
T Consensus 15 ~l~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDV-SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 66666 67777787766 99999999999999999999999965433222211100000000011111100 001111
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 371 KLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 371 ~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.|...+. ..||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 t~~e~l~~~------~~LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 94 SVAENIALS------SLLSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred cHHHHHHHH------hhcCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 222211111 12999999999999999 68899999885
No 137
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6.8e-11 Score=115.08 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=80.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccccC----CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEAP----VPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s~----~pg 354 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+...+ ++.
T Consensus 21 ~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 21 KALDNV-NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 577887 77778888766 999999999999999999999999754322111 1111211 123
Q ss_pred CeeeeEeeccc---ccc------ccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LPA------QAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~~------~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt 172 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33333322100 000 12456666774 24677899999999999999999 67888888874
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.09 E-value=1.6e-10 Score=107.10 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=79.2
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc--C
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA--P 351 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s--~ 351 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .
T Consensus 9 ~~~~~~~l~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 9 SFGDFHVLKGI-DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred EECCeEeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence 34445577777 77777888776 999999999999999999999999754322211 111111 1
Q ss_pred CCC-CeeeeEeecc----cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPG-TTLGIVRVEG----VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pg-tT~~~i~~~~----~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. +..+.+.... .... ...+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 88 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 88 FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 121 1122221100 0000 12244555664 24677899999999999999999 68899999885
No 139
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.7e-10 Score=110.28 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=82.8
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s- 350 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+...
T Consensus 7 ~l~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 7 NLTVGYGTKRILNDL-SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH 85 (255)
T ss_pred eEEEEECCEEEEeee-eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccC
Confidence 334455555678888 77778888766 99999999999999999999999975422111 1111111
Q ss_pred -CCCCCe-eeeEeec-------ccc-c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 -PVPGTT-LGIVRVE-------GVL-P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 -~~pgtT-~~~i~~~-------~~l-~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..++.| .+.+.+. +.. . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|
T Consensus 86 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112222 1222110 000 0 012345555664 34678899999999999999999 6899999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 166 ~ 166 (255)
T PRK11231 166 T 166 (255)
T ss_pred c
Confidence 5
No 140
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.4e-10 Score=109.58 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=81.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t 348 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+ ..+.
T Consensus 8 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 8 FDKVSAHYGKIQALHEV-SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred EEeEEEeeCCceeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 34445556555678888 77778888776 999999999999999999999999754222111 1111
Q ss_pred c--cCCCCCe-eeeEeeccc-cc-c-----cccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 E--APVPGTT-LGIVRVEGV-LP-A-----QAKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~--s~~pgtT-~~~i~~~~~-l~-~-----~~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ..+++.| .+.+..... .. . ...+++.. ++. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 1 1122222 222211000 00 0 01122322 232 23467789999999999999999 78999999885
No 141
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.09 E-value=8.1e-11 Score=107.90 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=77.8
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc--------ccccc--C-CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS--------HLTEA--P-VPGT 355 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~--------~~t~s--~-~pgt 355 (413)
..|+...+++ + ++....|++++ +|+||+|||||+++|+|...+.+|.+......+. .+... . ...|
T Consensus 9 ~~~~~~~l~~-v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~t 86 (195)
T PRK13541 9 FNIEQKNLFD-L-SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMT 86 (195)
T ss_pred EEECCcEEEE-E-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCC
Confidence 3444444554 5 77777888776 9999999999999999999999997553322211 11100 0 1122
Q ss_pred eeeeEeeccccc----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLP----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 v~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 87 VFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 223222110000 012233444554 24567889999999999999999 57889998874
No 142
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6.1e-11 Score=114.62 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=82.6
Q ss_pred EEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC
Q 015085 286 AVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP 351 (413)
Q Consensus 286 a~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~ 351 (413)
....|+ ...+++.+ ++...+|+++. +|+||+|||||+++|+|+++|.+|.+...... +..+...+
T Consensus 10 l~~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 10 LHFRYKDGTKALKGL-SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred EEEEeCCCCeeeeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 334443 34578888 77778888777 99999999999999999999999975432211 11111111
Q ss_pred ----CCCCeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 ----VPGTTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ----~pgtT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...|..+.+.+... .. ....+++..|+. ..++.+..||+|++||+.++++| .|+.+.||+|.
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 89 DDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred hhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 11233333322100 00 012345555664 34678899999999999999999 68889998874
No 143
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.09 E-value=9.8e-11 Score=111.32 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=80.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v--------------~~~ 347 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|...|. +|.+......+ ..+
T Consensus 9 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 87 (247)
T TIGR00972 9 LFYGEKEALKNI-NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMV 87 (247)
T ss_pred EEECCeeeecce-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEE
Confidence 344444577777 77778888776 9999999999999999999987 88654322111 111
Q ss_pred ccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.|..+.+.+.....+ ...+++..|+. ..++....||+||+||+.++++| .|+.+.
T Consensus 88 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 88 FQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred ecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 112222333221100000 11244555663 23577899999999999999999 688999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 168 lDEPt 172 (247)
T TIGR00972 168 LDEPT 172 (247)
T ss_pred EeCCc
Confidence 99885
No 144
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.09 E-value=3.3e-10 Score=118.20 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=87.6
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccc-ccccccccCCCC---C
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEAPVPG---T 355 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s~~pg---t 355 (413)
+...+....+|...|++.+ ++....|+ +.+||.||+||||||++|+|...++.|.+..... .+.++.+..... |
T Consensus 4 i~~~~ls~~~g~~~l~~~~-~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 4 ITLENLSLAYGDRPLLENV-SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred EEEeeeEEeeCCceeecCC-cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCcc
Confidence 4556677888999999999 67666665 5559999999999999999999999997654322 233333322211 2
Q ss_pred eeeeEeeccc---------------c------------------------cccccccccccccCCCCCCCCCCHHHHHHH
Q 015085 356 TLGIVRVEGV---------------L------------------------PAQAKLFDTPGLLHPNQITTRLTREEQKLV 396 (413)
Q Consensus 356 T~~~i~~~~~---------------l------------------------~~~~~liDtpGl~~~~~~~~~LS~ge~q~v 396 (413)
+.+.+..... + .....++.--|+...++....||||++.|+
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv 162 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH
Confidence 2221110000 0 000122333455444788999999999999
Q ss_pred HHhhhh--cCCccccCCC
Q 015085 397 NINKEL--KPRTYRIKVS 412 (413)
Q Consensus 397 ~i~r~l--~~~~~~l~~~ 412 (413)
++|++| .|....||+|
T Consensus 163 ~LA~aL~~~pDlLLLDEP 180 (530)
T COG0488 163 ALARALLEEPDLLLLDEP 180 (530)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 999999 7889999987
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.08 E-value=2.3e-10 Score=107.33 Aligned_cols=119 Identities=26% Similarity=0.375 Sum_probs=76.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+... .+++
T Consensus 24 ~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGV-ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEecc-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 377777 77778888777 99999999999999999999999975422211 1111111 1122
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+.... . ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222222110000 0 011234455654 23577889999999999999999 68899999885
No 146
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.08 E-value=1.8e-10 Score=112.93 Aligned_cols=129 Identities=17% Similarity=0.260 Sum_probs=86.3
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc-
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s- 350 (413)
....+.||...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +.++...
T Consensus 6 ~~l~~~~~~~~~l~~i-s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 6 SSLTKLYGTQNALDEV-SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEEEECCEEEEEEe-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence 3444556656688888 78888888877 99999999999999999999999975432211 1222211
Q ss_pred -CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+++.| .+.+.+...+ . ....+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 85 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 123322 2332211101 1 012345556765 34688899999999999999999 78888888874
No 147
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.08 E-value=1.9e-10 Score=111.09 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=82.6
Q ss_pred EeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------cccccccC
Q 015085 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------VSHLTEAP 351 (413)
Q Consensus 283 ~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------v~~~t~s~ 351 (413)
+.+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+....
T Consensus 9 ~~~l~~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDA-SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEeEEEEecCCcEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 334444553 34577777 77777888776 99999999999999999999999975432211 22221111
Q ss_pred -----CCCCeeeeEeecc-------ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 352 -----VPGTTLGIVRVEG-------VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 352 -----~pgtT~~~i~~~~-------~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+.+..+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.+|
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0111112221100 000 011345556664 34677899999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 168 EPt 170 (272)
T PRK15056 168 EPF 170 (272)
T ss_pred CCC
Confidence 885
No 148
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.08 E-value=2.7e-10 Score=114.17 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE 349 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~ 349 (413)
.+.||...+ .+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+..
T Consensus 6 ~~~~~~~~~--~i-sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 6 SKRLGDFSL--DA-DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEECCEEE--EE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 344554333 45 67777788766 999999999999999999999999754322111 11111
Q ss_pred --cCCCCCe-eeeEeecccc---c----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 --APVPGTT-LGIVRVEGVL---P----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~~l---~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+++.| .+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1123322 2222211000 0 012355566765 34678899999999999999999 68899999885
No 149
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.08 E-value=3.2e-10 Score=106.17 Aligned_cols=119 Identities=22% Similarity=0.249 Sum_probs=77.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC---C-C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP---V-P 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~---~-p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+...... +..+.... + +
T Consensus 19 ~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDV-SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 577777 77778888777 99999999999999999999999975432211 11111111 1 1
Q ss_pred C-CeeeeEeeccc-----cc----cc--cccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGV-----LP----AQ--AKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~-----l~----~~--~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+... .. .. ..+++..|+. ..++....||+||+||+.++|++ .|+.+.||+|+
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 173 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 1 22222211000 00 00 1344556663 24677889999999999999999 67889999885
No 150
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.7e-10 Score=118.05 Aligned_cols=128 Identities=23% Similarity=0.365 Sum_probs=89.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------------ 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------------ 349 (413)
+-+..+.||.-..++.+ ++...+|++.. +|.||+|||||+|+|+|.+.|++|++..+...+...+.
T Consensus 11 ~~~i~K~FggV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccc-eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 55667889988888888 88889999888 99999999999999999999999986644333322111
Q ss_pred ---cCCCCCee-eeEeecccccc--------------cccccccccc-cCCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 350 ---APVPGTTL-GIVRVEGVLPA--------------QAKLFDTPGL-LHPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 350 ---s~~pgtT~-~~i~~~~~l~~--------------~~~liDtpGl-~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+-.|..|. +++. .+.... -..+++..|+ ..++.....||.+|+|.|.|||++ ..+...
T Consensus 90 QEl~L~p~LsVaeNif-Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 90 QELSLVPNLSVAENIF-LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred echhccCCccHHHHhh-cccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11122221 1111 111110 1234555555 347788999999999999999999 567788
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
+|+|
T Consensus 169 lDEP 172 (500)
T COG1129 169 LDEP 172 (500)
T ss_pred EcCC
Confidence 8887
No 151
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.07 E-value=7.5e-11 Score=110.61 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC-----cCCCCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV-----DAGRGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~-----~~~~G~~~~~~~~v--------------~~~ 347 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+ ..+
T Consensus 8 ~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 86 (227)
T cd03260 8 VYYGDKHALKDI-SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86 (227)
T ss_pred EEcCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEE
Confidence 344545677777 77777888776 9999999999999999999 88889754322111 111
Q ss_pred ccc--CCCCCeeeeEeecccc----c------ccccccccccccC-CCCC--CCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 348 TEA--PVPGTTLGIVRVEGVL----P------AQAKLFDTPGLLH-PNQI--TTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l----~------~~~~liDtpGl~~-~~~~--~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
... .+..|..+.+.+.... . ....+++..|+.. .++. ...||+||+||+++++++ .|+.+.+|
T Consensus 87 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 87 FQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred ecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111 0112222322211000 0 0123455666652 2334 589999999999999999 57888888
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 167 EPt 169 (227)
T cd03260 167 EPT 169 (227)
T ss_pred CCC
Confidence 874
No 152
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=1e-10 Score=113.42 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=79.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s----~~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+...... +..+... .+
T Consensus 21 ~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDV-NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 477777 77778888776 99999999999999999999999975432211 1112211 11
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 173 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPT 173 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2233333221100 000 01345566774 24677899999999999999999 67889999885
No 153
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.07 E-value=2.1e-10 Score=120.15 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=84.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s 350 (413)
...+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+...
T Consensus 9 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK10762 9 GIDKAFPGVKALSGA-ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87 (501)
T ss_pred eeEEEeCCeEEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcc
Confidence 334455555678888 77778888776 999999999999999999999999764322111 111111
Q ss_pred --CCCC-CeeeeEeeccc-------cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 351 --PVPG-TTLGIVRVEGV-------LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~-------l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.++. |..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1122 22232222100 00 012345666775 34678899999999999999999 788999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 168 Pt 169 (501)
T PRK10762 168 PT 169 (501)
T ss_pred Cc
Confidence 85
No 154
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=3.3e-10 Score=104.59 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=73.2
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
...+++.+ ++....|++++ +|+||+|||||+++|+|.++ +.+|.+......+...... . .....++.....+.
T Consensus 19 ~~~il~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~-~-~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDF-SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK-Y-PGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeE-EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh-h-cceEEEEecccccC
Confidence 34577777 77778888777 99999999999999999998 7888654322211111000 0 00111111110011
Q ss_pred cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....+.|.-.+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 96 PTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred CCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 111222221111 14567789999999999999999 68889999884
No 155
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.07 E-value=2.7e-10 Score=108.37 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=81.5
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------------cc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------------VS 345 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------------v~ 345 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+++|.+...... +.
T Consensus 10 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (250)
T PRK11264 10 VKKFHGQTVLHGI-DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88 (250)
T ss_pred EEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEE
Confidence 3445545678887 77778888776 99999999999999999999999975422111 11
Q ss_pred ccccc--CCCC-CeeeeEeecc----ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .+++ |..+.+.+.. ... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1222 2223222100 000 011345555665 24677899999999999999999 7888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 169 DEPt 172 (250)
T PRK11264 169 DEPT 172 (250)
T ss_pred eCCC
Confidence 9874
No 156
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.07 E-value=2.5e-10 Score=104.73 Aligned_cols=113 Identities=27% Similarity=0.274 Sum_probs=69.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccccCCCCCeeeeEeeccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~ 369 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+.. .... ....++.....+...
T Consensus 22 ~~~l~~~-~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~-~~i~~~~q~~~~~~~ 96 (194)
T cd03213 22 KQLLKNV-SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFR-KIIGYVPQDDILHPT 96 (194)
T ss_pred ccceecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhh-heEEEccCcccCCCC
Confidence 4578888 77778888776 9999999999999999999 9999965433222111 0000 001111110001011
Q ss_pred ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 370 AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 370 ~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.|...+.. ....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 97 ~t~~~~i~~~~---~~~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 97 LTVRETLMFAA---KLRGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred CcHHHHHHHHH---HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11222111110 0127999999999999999 68889888875
No 157
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=3.4e-10 Score=109.19 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred EeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccc
Q 015085 283 FVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHL 347 (413)
Q Consensus 283 ~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~ 347 (413)
+.+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+
T Consensus 10 ~~nl~~~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 10 VENVSFSYPNSENNALKNV-SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEeEEEEcCCCCccceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 334444553 34577887 77777888776 99999999999999999999999975422211 1111
Q ss_pred ccc---CCCC-CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TEA---PVPG-TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~s---~~pg-tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
... .+++ |..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111 1222 22232221100 000 12345555665 34678899999999999999999 578899998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 169 P~ 170 (271)
T PRK13632 169 ST 170 (271)
T ss_pred Cc
Confidence 85
No 158
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=8.8e-11 Score=112.32 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=79.1
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc--CCCCCe-eeeE
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA--PVPGTT-LGIV 360 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s--~~pgtT-~~~i 360 (413)
++..+.|++++ +|-+|+|||||+++|.++..|++|++.-....+ ..+.++ -+|..| ++.+
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv 127 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENV 127 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhh
Confidence 45567789988 999999999999999999999999865332222 111111 234332 3333
Q ss_pred eeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+...+. ...+.+++.|+. +.++++++||||.||||-+||+| .+....++++|
T Consensus 128 ~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 128 AFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 3321111 124678899997 67899999999999999999999 45666666654
No 159
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.06 E-value=2.9e-10 Score=104.82 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------ccccc--CCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTEA--PVP- 353 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~s--~~p- 353 (413)
.++...+++.+ ++...+|+++. +|+||+|||||+++|+|..++.+|.+......+. .+... ..+
T Consensus 9 ~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (201)
T cd03231 9 ERDGRALFSGL-SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87 (201)
T ss_pred EeCCceeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCC
Confidence 34445677777 77777788766 9999999999999999999999997543221111 11000 001
Q ss_pred CCeeeeEeeccccc---cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGVLP---AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~l~---~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|.
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 88 LSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred cCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 12222221110000 012334455554 24577889999999999999999 68888888874
No 160
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.06 E-value=9.8e-11 Score=111.78 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC-C-CC---Ceee
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP-V-PG---TTLG 358 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~-~-pg---tT~~ 358 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+.... ..+..+.... . +. +..+
T Consensus 10 l~~~~~~~~vl~~v-s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~ 88 (251)
T PRK09544 10 VSVSFGQRRVLSDV-SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNR 88 (251)
T ss_pred eEEEECCceEEEeE-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHH
Confidence 33445545577777 77777888666 999999999999999999999999754321 1122222211 1 11 1111
Q ss_pred eEeecccc--ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVL--PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l--~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.... .....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 89 FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11110000 0112345556664 23577889999999999999999 68999999885
No 161
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.06 E-value=1.7e-10 Score=107.00 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=77.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.+++++|.+......+ ..+... .+++
T Consensus 14 ~~~l~~~-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 4577777 77777888766 999999999999999999999999754322111 111111 1222
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 222222111000 0 011344555664 23567889999999999999999 78899999885
No 162
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=1.4e-10 Score=101.65 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=81.1
Q ss_pred chhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--------------ccCCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--------------EAPVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--------------~s~~pgtT~ 357 (413)
..+++.| ++...+|+. .+.||+|+|||||+++++-+..|++|.+..++..++.+. ..-+++|.-
T Consensus 16 a~il~~i-sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 16 AKILNNI-SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred Ceeecce-eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 3455555 566666665 449999999999999999999999998765554443322 233567777
Q ss_pred eeEeeccccccc-------cccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 358 GIVRVEGVLPAQ-------AKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 358 ~~i~~~~~l~~~-------~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+.++..+... ..++.-.++. ...+.+..|||||+|++++.|.| .|+...|+++
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 777665443221 1122223332 12456788999999999999999 5788888775
No 163
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.8e-10 Score=110.07 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=81.3
Q ss_pred EEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc
Q 015085 286 AVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA 350 (413)
Q Consensus 286 a~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s 350 (413)
....|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 7 l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (274)
T PRK13644 7 VSYSYPDGTPALENI-NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN 85 (274)
T ss_pred EEEEcCCCCceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEC
Confidence 334442 33477777 78888888777 999999999999999999999999754322211 111111
Q ss_pred C---CCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 P---VPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~---~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ +.+ +..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 86 PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred hhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 111 112222111000 0 011345555664 34678899999999999999999 68889999874
No 164
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.1e-10 Score=113.71 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=79.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s----~~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+... .+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNI-SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 478888 77778888776 999999999999999999999999755332221 111111 11
Q ss_pred CCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+..+.+.+... .. ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt 173 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1222232221100 00 012346666774 34688899999999999999999 68888998884
No 165
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.06 E-value=5.9e-11 Score=111.30 Aligned_cols=124 Identities=21% Similarity=0.183 Sum_probs=81.1
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--ccCCCC-CeeeeEeecc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--EAPVPG-TTLGIVRVEG 364 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--~s~~pg-tT~~~i~~~~ 364 (413)
+||...+++.+ ++....|++++ +|+||+|||||+++|+|..++++|.+......+.... ....+. |..+.+.+..
T Consensus 31 ~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~ 109 (224)
T cd03220 31 EVGEFWALKDV-SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNG 109 (224)
T ss_pred hcCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHH
Confidence 56666677777 77777888776 9999999999999999999999997653322211110 111122 2222222110
Q ss_pred c---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 V---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 ~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 012344555664 23577899999999999999999 68889999885
No 166
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.06 E-value=3.2e-10 Score=106.06 Aligned_cols=125 Identities=19% Similarity=0.288 Sum_probs=79.9
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------cccccc--CCCC-C
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------SHLTEA--PVPG-T 355 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------~~~t~s--~~pg-t 355 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+... .++. +
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 8 KRFGKQTAVNNI-SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86 (223)
T ss_pred EEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCC
Confidence 344445577777 77777888776 999999999999999999999999754322111 111100 1121 2
Q ss_pred eeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+...... . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 87 ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 22222110000 0 112345555664 24567889999999999999999 57899999885
No 167
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=8.4e-11 Score=114.50 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEEeEEEeecCcc-----hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~-----~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------- 343 (413)
+.+.+....|+.. .+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 4444445555432 378887 78888888777 99999999999999999999999975432211
Q ss_pred ------cccccccC----CCCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 344 ------VSHLTEAP----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 344 ------v~~~t~s~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
+..+.... ++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++|
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 11111111 11222222211100 000 01234444552 24577899999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 166 ~~~p~lLlLDEPt 178 (289)
T PRK13645 166 AMDGNTLVLDEPT 178 (289)
T ss_pred HhCCCEEEEeCCc
Confidence 78899999885
No 168
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.06 E-value=5e-10 Score=104.24 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=81.5
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------cccccc--
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------SHLTEA-- 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------~~~t~s-- 350 (413)
+......++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+...
T Consensus 14 ~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 14 AHALAFSRNEEPVFGPL-DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred EeeEEEecCCceeeecc-eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence 34444556555677777 77778888776 999999999999999999999999754332111 111110
Q ss_pred CCCC-CeeeeEeecccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++ +..+.+.+.....+ ...+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 93 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 93 LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11222111000000 01233444553 23677889999999999999999 68888888874
No 169
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.6e-10 Score=111.98 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=84.8
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHL 347 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~ 347 (413)
+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|..+|.+|.+......+ .++
T Consensus 8 ~~~l~~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 8 VEHISFRYPDAATYALKDV-SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEeCCCCccceeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 3444455542 3478887 78888888877 999999999999999999999999754332211 111
Q ss_pred cccC---CC-CCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TEAP---VP-GTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~s~---~p-gtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... ++ .|..+.+.+... ... ...+++..|+. ..++.+..||+|++|++.++++| .|+.+.||+
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1111 11 122232222100 000 12345555665 34677899999999999999999 788899988
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 167 Pt 168 (279)
T PRK13635 167 AT 168 (279)
T ss_pred Cc
Confidence 74
No 170
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=3e-10 Score=109.18 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~ 349 (413)
+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+..
T Consensus 14 i~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 14 LRNVSFRVPGRTLLHPL-SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred EeeEEEEECCEEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 33444556555678888 78778888776 99999999999999999999999975432211 111111
Q ss_pred c--CCCCCee-eeEeeccc--------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 A--PVPGTTL-GIVRVEGV--------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 s--~~pgtT~-~~i~~~~~--------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
. .+++.|. +.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 1233222 22211000 00 011234444554 24677889999999999999999 78899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 173 EPt 175 (265)
T PRK10575 173 EPT 175 (265)
T ss_pred CCc
Confidence 885
No 171
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.1e-10 Score=112.74 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=79.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------------cc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------------HL 347 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------------~~ 347 (413)
+..+.||...+ .+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+. .+
T Consensus 5 ~l~k~~~~~~~--~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TV-NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 33455554322 44 66667787766 9999999999999999999999997543221111 11
Q ss_pred ccc--CCCCCe-eeeEeecccc---ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL---PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l---~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... -+|..| .+.+.+.... .....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 111 122212 2222211000 0012345566765 34678899999999999999999 68999999885
No 172
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=3.5e-10 Score=107.02 Aligned_cols=126 Identities=25% Similarity=0.329 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc-
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s- 350 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+.+|.+......+ ..+...
T Consensus 8 ~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 86 (240)
T PRK09493 8 SKHFGPTQVLHNI-DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF 86 (240)
T ss_pred EEEECCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence 3344445577777 77777888776 999999999999999999999999754322111 111111
Q ss_pred -CCCC-CeeeeEeecc-c---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPG-TTLGIVRVEG-V---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~-~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++ +..+.+.+.. . .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1222 2222222110 0 00 012345556664 23677889999999999999999 67889999885
No 173
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.05 E-value=4.4e-10 Score=106.38 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=76.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCccccccc-------------cccccc-
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIV-------------SHLTEA- 350 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v-------------~~~t~s- 350 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+ ..+...
T Consensus 8 ~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 8 VSVEDKEILKGV-NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred EEECCEEEEecc-ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccc
Confidence 344445577777 77778888776 9999999999999999995 68888754322111 111111
Q ss_pred -CCCCCee-eeEeeccc----------cc------ccccccccccccC--CCCCCC-CCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 -PVPGTTL-GIVRVEGV----------LP------AQAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 -~~pgtT~-~~i~~~~~----------l~------~~~~liDtpGl~~--~~~~~~-~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.++++|. +.+..... .. ....+++..|+.. .++... .||+||+||+.+++++ .|+.+
T Consensus 87 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 87 EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLA 166 (243)
T ss_pred cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEE
Confidence 1122221 11110000 00 0112334445541 345555 5999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 167 llDEPt 172 (243)
T TIGR01978 167 ILDEID 172 (243)
T ss_pred EecCCc
Confidence 999885
No 174
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.4e-10 Score=113.90 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=78.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------------------------
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------------------- 343 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------------------- 343 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|+++|++|.+......
T Consensus 21 ~~l~~v-sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNV-SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 477777 77778888766 99999999999999999999999975432111
Q ss_pred -------cccccccC----CCCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -------VSHLTEAP----VPGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -------v~~~t~s~----~pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+...+ +..|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+++|++
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 11111110 11122222221100 00 012345566773 3568899999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
| .|+.+.||+|+
T Consensus 180 L~~~P~lLlLDEPt 193 (305)
T PRK13651 180 LAMEPDFLVFDEPT 193 (305)
T ss_pred HHhCCCEEEEeCCC
Confidence 9 68889999884
No 175
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.05 E-value=2.7e-10 Score=109.00 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=81.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----cc-------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----VS------------- 345 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----v~------------- 345 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +.
T Consensus 11 ~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~ 89 (258)
T PRK11701 11 GLTKLYGPRKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89 (258)
T ss_pred eeEEEcCCceeeeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhc
Confidence 334455445577777 77777888777 99999999999999999999999975432221 11
Q ss_pred ---cccccC----CCCCe-eeeEeec---ccc-c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 346 ---HLTEAP----VPGTT-LGIVRVE---GVL-P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 346 ---~~t~s~----~pgtT-~~~i~~~---~~l-~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+.... .+..| .+.+... ... . ....+++..|+. ..++....||+||+||++++|++ .
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 111110 01111 0011000 000 0 012345566664 24677899999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 170 p~llllDEPt 179 (258)
T PRK11701 170 PRLVFMDEPT 179 (258)
T ss_pred CCEEEEcCCc
Confidence 8999999885
No 176
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.05 E-value=2.3e-10 Score=119.53 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=83.2
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s 350 (413)
.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+...
T Consensus 7 ~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~ 85 (490)
T PRK10938 7 SQGTFRLSDTKTLQLP-SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQR 85 (490)
T ss_pred EeEEEEcCCeeecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccC
Confidence 3445556655688888 77778888776 999999999999999999999999764221111 111110
Q ss_pred CC-----C-----CCe-eeeEeeccc-cccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PV-----P-----GTT-LGIVRVEGV-LPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~-----p-----gtT-~~~i~~~~~-l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. + +.| .+.+..... ......+++..|+. ..++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 86 NNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 00 0 111 111100000 00112355566664 34688999999999999999999 68999999985
No 177
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.05 E-value=1.7e-10 Score=107.50 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=78.3
Q ss_pred eEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------c
Q 015085 284 VSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------S 345 (413)
Q Consensus 284 vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~ 345 (413)
.|....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|...+.+|.+......+ .
T Consensus 4 ~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 4 TNGYFSWGSGLATLSNI-NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred eeeEEecCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE
Confidence 34455564 34577777 77777888777 999999999999999999999999754322111 1
Q ss_pred ccccc--CCCCCeeeeEeecccccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... -++.+..+.+........ ...+.+..|+.. .++....||+||+||+.+++++ .|+.+
T Consensus 83 ~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~il 162 (218)
T cd03290 83 YAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIV 162 (218)
T ss_pred EEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 11111 012222222222100100 011222223210 1345788999999999999999 68888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 163 llDEPt 168 (218)
T cd03290 163 FLDDPF 168 (218)
T ss_pred EEeCCc
Confidence 888874
No 178
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=1.5e-10 Score=122.78 Aligned_cols=129 Identities=23% Similarity=0.195 Sum_probs=85.0
Q ss_pred eEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccC--CCC-Cee
Q 015085 284 VSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAP--VPG-TTL 357 (413)
Q Consensus 284 vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~--~pg-tT~ 357 (413)
-+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|.+.|++|.+... ...+..+...+ ++. |..
T Consensus 10 ~~l~~~y~~~~~il~~v-s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 10 NRVSKVVPPKKQILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred eeEEEEeCCCCeeeeCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHH
Confidence 34445565 46688888 88888888766 99999999999999999999999976432 11222222221 122 222
Q ss_pred eeEeeccc----------------c-c----------------------------ccccccccccccCCCCCCCCCCHHH
Q 015085 358 GIVRVEGV----------------L-P----------------------------AQAKLFDTPGLLHPNQITTRLTREE 392 (413)
Q Consensus 358 ~~i~~~~~----------------l-~----------------------------~~~~liDtpGl~~~~~~~~~LS~ge 392 (413)
+.+.+... . . ....+++..|+...++....||+||
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGq 168 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHH
Confidence 32221000 0 0 0012344556643467889999999
Q ss_pred HHHHHHhhhh--cCCccccCCCC
Q 015085 393 QKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 393 ~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+||+.+++++ .|+.+.||+|+
T Consensus 169 kqrv~la~al~~~p~vlLLDEPt 191 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLDEPT 191 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCC
Confidence 9999999999 68999999985
No 179
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.1e-10 Score=106.04 Aligned_cols=126 Identities=24% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCC-----CCcc--------------ccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG-----GDGE--------------EKNIV 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G-----~~~~--------------~~~~v 344 (413)
+...-||..++++.| ++...++.|.. +||+||||||||++|........| ++.. .++.+
T Consensus 12 ~l~~yYg~~~aL~~i-~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 12 DLNLYYGDKHALKDI-NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred ceeEEECchhhhccC-ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 344567888889888 77777778777 999999999999999887665543 2211 12222
Q ss_pred ccccc--cCCCCCeeeeEeeccccccc---------------ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTE--APVPGTTLGIVRVEGVLPAQ---------------AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~--s~~pgtT~~~i~~~~~l~~~---------------~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+ .++|.+-.+.+.+-.++.+. ..|+|-+-= +.++....||||||||++|||+| +|+
T Consensus 91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-rL~~sa~~LSGGQQQRLcIARalAv~Pe 169 (253)
T COG1117 91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-RLHKSALGLSGGQQQRLCIARALAVKPE 169 (253)
T ss_pred eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-HhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence 33322 34454444444332111110 112221110 23456677999999999999999 788
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
+..+|+|
T Consensus 170 VlLmDEP 176 (253)
T COG1117 170 VLLMDEP 176 (253)
T ss_pred EEEecCc
Confidence 8888887
No 180
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.04 E-value=2.4e-10 Score=110.44 Aligned_cols=125 Identities=23% Similarity=0.236 Sum_probs=80.2
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC--------CCCCcccccc------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--------RGGDGEEKNI------------VSH 346 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~--------~G~~~~~~~~------------v~~ 346 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|++++. +|.+...... +..
T Consensus 9 ~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 9 VARRHRAILRDL-SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred EEECCEeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 344545678887 77778888766 9999999999999999999887 6764422111 111
Q ss_pred cccc---CCCCCeeeeEeeccc-c-------c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc------
Q 015085 347 LTEA---PVPGTTLGIVRVEGV-L-------P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK------ 403 (413)
Q Consensus 347 ~t~s---~~pgtT~~~i~~~~~-l-------~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~------ 403 (413)
+... ....|..+.+.+... . . ....+++..|+. ..++....||+||+||+.++++|.
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence 1111 112233333322100 0 0 011234455664 245778999999999999999996
Q ss_pred -----CCccccCCCC
Q 015085 404 -----PRTYRIKVSL 413 (413)
Q Consensus 404 -----~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 168 ~~~~~p~lllLDEPt 182 (272)
T PRK13547 168 DAAQPPRYLLLDEPT 182 (272)
T ss_pred ccCCCCCEEEEcCcc
Confidence 8999999885
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.4e-10 Score=112.22 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=80.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc----CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA----PVP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s----~~p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .++
T Consensus 15 ~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGI-NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred Ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 3477777 78888888777 999999999999999999999999754322111 111111 122
Q ss_pred CCeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|..+.+.+... .. ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 165 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 233333321100 00 012355666664 34678899999999999999999 67888888874
No 182
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=3.3e-10 Score=118.82 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=84.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCcccccc-------------cccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~-------------v~~~ 347 (413)
.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+
T Consensus 9 ~nl~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 9 KNITKTFGGVKALDNV-SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred eeeEEEeCCeEeecce-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 3444556655688888 78888888776 999999999999999999986 68875432211 1111
Q ss_pred ccc--CCCC-CeeeeEeecccc------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 348 TEA--PVPG-TTLGIVRVEGVL------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 348 t~s--~~pg-tT~~~i~~~~~l------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
... .++. |..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.|
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111 1122 222332221100 0 012345556664 34678899999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (506)
T PRK13549 168 DEPT 171 (506)
T ss_pred eCCC
Confidence 9985
No 183
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=3.6e-10 Score=107.04 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=82.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------c
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------S 345 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~ 345 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+.+|.+......+ .
T Consensus 7 ~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~ 85 (242)
T PRK11124 7 GINCFYGAHQALFDI-TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVG 85 (242)
T ss_pred eeEEEECCeeeEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheE
Confidence 334455555678887 77778888776 999999999999999999999999754322211 1
Q ss_pred ccccc--CCCCCe-eeeEee-ccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPGTT-LGIVRV-EGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pgtT-~~~i~~-~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .+++.| .+.+.. ... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.|
T Consensus 86 ~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 165 (242)
T PRK11124 86 MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 122222 222211 000 00 012244555664 34677889999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 166 DEPt 169 (242)
T PRK11124 166 DEPT 169 (242)
T ss_pred cCCC
Confidence 9884
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.04 E-value=3.1e-10 Score=119.09 Aligned_cols=129 Identities=18% Similarity=0.246 Sum_probs=84.5
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTE 349 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~ 349 (413)
....+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +..+..
T Consensus 9 ~~l~~~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 87 (510)
T PRK09700 9 AGIGKSFGPVHALKSV-NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQ 87 (510)
T ss_pred eeeEEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEee
Confidence 3444556655678888 78888888776 99999999999999999999999975432211 111111
Q ss_pred c--CCCCCe-eeeEeeccc----c-c-----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 350 A--PVPGTT-LGIVRVEGV----L-P-----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~----l-~-----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
. .++..| .+.+.+... . . ....+++..|+. ..++.+..||+||+||+.++++| .|+.+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1 112222 222221100 0 0 012345556665 34678899999999999999999 68999
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 168 lLDEPt 173 (510)
T PRK09700 168 IMDEPT 173 (510)
T ss_pred EEeCCC
Confidence 999885
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=5.9e-10 Score=103.35 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=74.7
Q ss_pred chhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCCCe-eeeEeec
Q 015085 298 DVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPGTT-LGIVRVE 363 (413)
Q Consensus 298 ~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pgtT-~~~i~~~ 363 (413)
.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+++.| .+.+.+.
T Consensus 16 ~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HF-DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 44 66667788766 99999999999999999999999975432211 1111111 123322 2333221
Q ss_pred ccc--c-------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 GVL--P-------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 ~~l--~-------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 100 0 012345555664 24577889999999999999999 68999999885
No 186
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=6.1e-10 Score=106.01 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=79.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------cc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------SH 346 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------~~ 346 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+ ..
T Consensus 8 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 86 (250)
T PRK14247 8 DLKVSFGQVEVLDGV-NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86 (250)
T ss_pred eeEEEECCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence 333445545677777 77777888766 999999999999999999874 578654222111 11
Q ss_pred cccc--CCCC-CeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
+... .++. |..+.+.+.... . . ...+++..|+. ..++....||+||+||+++++++ .|+
T Consensus 87 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 166 (250)
T PRK14247 87 VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE 166 (250)
T ss_pred EeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1111 1222 222322211000 0 0 01234444552 23577889999999999999999 589
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 167 lllLDEP~ 174 (250)
T PRK14247 167 VLLADEPT 174 (250)
T ss_pred EEEEcCCC
Confidence 99999885
No 187
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.04 E-value=4.6e-11 Score=102.75 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------cccc--CCCCCeeeeEeeccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEA--PVPGTTLGIVRVEGV 365 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s--~~pgtT~~~i~~~~~ 365 (413)
++....|++++ +|+||+|||||+++|+|...+.+|.+......+.. +... .+++.|......
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~--- 81 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES--- 81 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH---
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 44456677666 99999999999999999999988865422222111 0000 011121100000
Q ss_pred cccccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 LPAQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 l~~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
......+++..++. ..++....||+||+||+.+++++ .++.+.||+|+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 00011122222322 12334499999999999999999 78889999885
No 188
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.03 E-value=1.8e-10 Score=115.95 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=81.3
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------cccccc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------IVSHLT 348 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------~v~~~t 348 (413)
+|....++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+..... .+.++.
T Consensus 34 ~g~~~~l~~v-sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 34 TGLVVGVANA-SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hCCEEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3444445555 66667788777 9999999999999999999999997543321 111111
Q ss_pred cc--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. -+|. |..+.+.+.... . ...++++..|+. ..++....||+|++||+.++|+| .|+.+.+|+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 1232 333333321100 0 012456677775 45788899999999999999999 67889998885
No 189
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.03 E-value=4.2e-10 Score=117.83 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=83.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s 350 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+...
T Consensus 9 ~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK11288 9 GIGKTFPGVKALDDI-SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87 (501)
T ss_pred eeEEEECCEEEEeee-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEec
Confidence 344455555678888 78778888766 99999999999999999999999976432211 1111111
Q ss_pred --CCCC-CeeeeEeecc-----c-cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 --PVPG-TTLGIVRVEG-----V-LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~-----~-l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+++ |..+.+.+.. . .. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 88 LHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred hhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1122 2222222110 0 00 012345556664 34677899999999999999999 6899999998
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 168 t 168 (501)
T PRK11288 168 T 168 (501)
T ss_pred C
Confidence 5
No 190
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.1e-10 Score=111.00 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=82.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA 350 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s 350 (413)
.....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+...
T Consensus 8 ~l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 86 (277)
T PRK13652 8 DLCYSYSGSKEALNNI-NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN 86 (277)
T ss_pred EEEEEeCCCCceeeEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecC
Confidence 3344553 33477887 78778888776 999999999999999999999999754322211 111111
Q ss_pred C----CCCCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 P----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ +..|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 87 PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred cccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 11122222211000 000 12345555664 34677899999999999999999 78888888874
No 191
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.03 E-value=2.4e-10 Score=115.24 Aligned_cols=131 Identities=25% Similarity=0.244 Sum_probs=91.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
+.+....+.|+.-...+.+ ++....|++.. +|.||+|||||+++|.|.+.|++|++......+..-..
T Consensus 5 l~~~~itK~f~~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 5 LEMRGITKRFPGVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EEEeccEEEcCCEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 4455667777766667777 88889999988 99999999999999999999999987644433321111
Q ss_pred -----cCCCCCe-eeeEeecccc------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 350 -----APVPGTT-LGIVRVEGVL------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 350 -----s~~pgtT-~~~i~~~~~l------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+-++..| .+++..-..- + ....+.+.-|+. .++.....||-|+||||.|-|+| .++...
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 1123322 2222211000 0 012456677886 78899999999999999999999 678888
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||+|
T Consensus 164 LDEP 167 (501)
T COG3845 164 LDEP 167 (501)
T ss_pred EcCC
Confidence 8887
No 192
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.03 E-value=2.4e-10 Score=106.59 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=78.3
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHL 347 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~ 347 (413)
+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|..++.+|.+...... +..+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNV-SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEEEEEcCCCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 3344445543 3578887 77778888776 99999999999999999999999975432211 1111
Q ss_pred ccc--CCCCCeeeeEeecccc-c--ccccccccccccC-CC-----------CCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVL-P--AQAKLFDTPGLLH-PN-----------QITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l-~--~~~~liDtpGl~~-~~-----------~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.+..+.+.+.... . ....+++..|+.. .+ .....||+||+||+.+++++ .|+.+.
T Consensus 84 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 163 (220)
T cd03245 84 PQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163 (220)
T ss_pred CCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 1122222322211000 0 0012233333321 11 23468999999999999999 688999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 164 lDEPt 168 (220)
T cd03245 164 LDEPT 168 (220)
T ss_pred EeCcc
Confidence 99884
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=8e-10 Score=104.10 Aligned_cols=125 Identities=25% Similarity=0.300 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------ccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~s--~~pg 354 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++..|.+......+. .+... .+++
T Consensus 8 ~~~~~~~il~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 8 KFYGGFVALDGV-SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred EEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 344444677777 77777888777 9999999999999999999999886543221111 11100 1122
Q ss_pred Ce-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+.... . ....+++..|+. ..++.+..||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 1221110000 0 011344555664 34677899999999999999999 67888888874
No 194
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.02 E-value=3.5e-10 Score=97.87 Aligned_cols=124 Identities=25% Similarity=0.364 Sum_probs=91.7
Q ss_pred CCCccchhhhhhh-hcCcccccccccC---CCCchhh-HHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhH
Q 015085 151 EKPVVCARCHALR-HYGKVKDVTVENL---LPDFDFD-HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (413)
Q Consensus 151 ~~~~~C~RC~~l~-hy~~~~~~~i~~~---~p~~~~~-~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~ 225 (413)
.|+.+||+-.... +|.+.+.+.+.+. .|.+.++ .++.+.+.....++|+|++|.|+.+....+.+.+...+.
T Consensus 13 GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~--- 89 (143)
T PF10662_consen 13 GKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFN--- 89 (143)
T ss_pred CHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccC---
Confidence 4567888755444 7777665543322 2777666 567888888889999999999999988888888877653
Q ss_pred hHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccch
Q 015085 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 226 ~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
+|+|-|+||+|+.....+.+...+|+ +..| ..+|+.+|+.++.|+++|.+.|
T Consensus 90 ---------------~pvIGVITK~Dl~~~~~~i~~a~~~L----~~aG---~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 90 ---------------KPVIGVITKIDLPSDDANIERAKKWL----KNAG---VKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred ---------------CCEEEEEECccCccchhhHHHHHHHH----HHcC---CCCeEEEECCCCcCHHHHHHHH
Confidence 38999999999974433444444454 4445 3578999999999999999877
No 195
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.02 E-value=5.2e-10 Score=106.95 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=82.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC-
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP- 351 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~- 351 (413)
....++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+...... +..+....
T Consensus 7 l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 7 VSWSAGGRLIVDGV-DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85 (256)
T ss_pred EEEEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc
Confidence 33445555678888 77777888776 99999999999999999999999975432211 11111111
Q ss_pred -CC-CCeeeeEeecc-c----c--c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 -VP-GTTLGIVRVEG-V----L--P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 -~p-gtT~~~i~~~~-~----l--~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .+..+.+.+.. . . . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 11 22222221100 0 0 0 012344555664 24677889999999999999999 68899999884
No 196
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.02 E-value=3.3e-10 Score=107.03 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc-c--cCCCC
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT-E--APVPG 354 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t-~--s~~pg 354 (413)
+|...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+. . .-++.
T Consensus 31 ~~~~~il~~v-s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGI-SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3445566777 67777788776 99999999999999999999999975432211 11111 0 00111
Q ss_pred Ce-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+... ... ...+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 111111000 000 01345555664 24667889999999999999999 68899999884
No 197
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=3.8e-10 Score=106.23 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=73.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +..+... .++.+..+
T Consensus 16 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDI-SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 567777 77777888776 99999999999999999999999975432211 1111111 11233333
Q ss_pred eEeecccccc--c----------cccccc-c-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLPA--Q----------AKLFDT-P-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~~--~----------~~liDt-p-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+...... . ..+++. + |+. ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 166 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEAT 166 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3322100000 0 001111 1 232 12455788999999999999999 68889999885
No 198
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.02 E-value=1.6e-10 Score=110.23 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=79.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------------
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS--------------------- 345 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~--------------------- 345 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+.
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (252)
T TIGR03005 8 KRFGILTVLDGL-NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMR 86 (252)
T ss_pred EEeCCeeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHh
Confidence 344444577777 77778888776 9999999999999999999999997543221111
Q ss_pred ----ccccc--CCCC-CeeeeEeecc----ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 ----HLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ----~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+... .++. +..+.+.+.. ... ....+++..|+. ..++....||+||+||+++++++ .|+
T Consensus 87 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 166 (252)
T TIGR03005 87 NKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPK 166 (252)
T ss_pred hCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCC
Confidence 11100 1121 2222221100 000 012344455654 23567889999999999999999 578
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 167 llllDEP~ 174 (252)
T TIGR03005 167 VMLFDEVT 174 (252)
T ss_pred EEEEeCCc
Confidence 89999884
No 199
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=2e-10 Score=111.51 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=83.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccc
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLT 348 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t 348 (413)
+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+.
T Consensus 10 ~l~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~ 88 (283)
T PRK13636 10 ELNYNYSDGTHALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVF 88 (283)
T ss_pred eEEEEeCCCCeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEe
Confidence 3344453 34577777 77778888777 999999999999999999999999754332211 1111
Q ss_pred ccC----CCCCeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 349 EAP----VPGTTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 349 ~s~----~pgtT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+ ++.|..+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|
T Consensus 89 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 89 QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred cCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111 1223333322110 000 012334555664 35688999999999999999999 6788888887
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
.
T Consensus 169 t 169 (283)
T PRK13636 169 T 169 (283)
T ss_pred c
Confidence 4
No 200
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.9e-10 Score=108.61 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=79.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc---CCCC-Ce
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA---PVPG-TT 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s---~~pg-tT 356 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|++.|.+|.+......+ ..+... .+++ |.
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 21 YTLNDV-SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 377777 77778888777 999999999999999999999999754322211 111111 1222 22
Q ss_pred eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 233322100 000 12345556665 34678899999999999999999 68888888874
No 201
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=6.4e-10 Score=107.16 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred EEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cc
Q 015085 282 HFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SH 346 (413)
Q Consensus 282 ~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~ 346 (413)
.+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..
T Consensus 9 ~i~~l~~~~~~~~~~~l~~i-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 9 VFKNVSFQYQSDASFTLKDV-SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEEEcCCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 33444455543 2367777 77778888776 999999999999999999999999755322111 11
Q ss_pred cccc---CCCCCee-eeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 347 LTEA---PVPGTTL-GIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 347 ~t~s---~~pgtT~-~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+... .++++|. +.+.+... .. ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111 1223221 11111000 00 011345555664 34577889999999999999999 68899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 168 EPt 170 (269)
T PRK13648 168 EAT 170 (269)
T ss_pred CCc
Confidence 885
No 202
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.01 E-value=2.8e-10 Score=109.08 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=83.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~----------- 343 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|++. +++|.+......
T Consensus 14 l~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNI-NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEEEeCCeEEeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 3344445556655678887 77778888776 99999999999999999986 467864322111
Q ss_pred ---ccccccc--CCCCCeeeeEeeccc----cc------cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTEA--PVPGTTLGIVRVEGV----LP------AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~s--~~pgtT~~~i~~~~~----l~------~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++.|..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++
T Consensus 93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 1111111 123333333322100 00 011344555542 23567889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 173 ~~p~lllLDEPt 184 (260)
T PRK10744 173 IRPEVLLLDEPC 184 (260)
T ss_pred CCCCEEEEcCCC
Confidence 68899999885
No 203
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.01 E-value=3.7e-10 Score=107.66 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=79.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----c--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----V-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----v-------------- 344 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +
T Consensus 8 ~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
T TIGR02323 8 GLSKSYGGGKGCRDV-SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86 (253)
T ss_pred eeEEEeCCceEeecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhc
Confidence 334445444567777 77777888777 99999999999999999999999975432211 1
Q ss_pred --ccccccC----CCCCe-eeeEe-----eccc-----cccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEAP----VPGTT-LGIVR-----VEGV-----LPAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s~----~pgtT-~~~i~-----~~~~-----l~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+.... .+..+ .+.+. .... ......+++..|+. ..++....||+||+||++++++| .
T Consensus 87 ~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 87 EWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred ceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcC
Confidence 1111110 00000 00000 0000 00012344555663 34677889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 167 p~vlllDEP~ 176 (253)
T TIGR02323 167 PRLVFMDEPT 176 (253)
T ss_pred CCEEEEcCCC
Confidence 8889999885
No 204
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.9e-11 Score=108.61 Aligned_cols=126 Identities=22% Similarity=0.266 Sum_probs=79.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------cccccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HLTEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~t~s~ 351 (413)
...+.||...+++.+ ++...+|.+.. +||||+|||||+.++.++.+.++|.+..+...+. .+.+..
T Consensus 6 nv~K~y~~~~vl~~i-sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 6 NVSKSYGTKVVLDDV-SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hhhHhhCCEEeeccc-eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 345677778888888 66667777766 9999999999999999999999998653322221 111111
Q ss_pred C---CCCeeeeEee---cc---cc--------cccccccccccccCCCCCCCCCCHHHHHHHHHhhhhcCCc--cccCCC
Q 015085 352 V---PGTTLGIVRV---EG---VL--------PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRT--YRIKVS 412 (413)
Q Consensus 352 ~---pgtT~~~i~~---~~---~l--------~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~--~~l~~~ 412 (413)
. .-|.++.+.+ ++ ++ +...+.++...+ .+++.++|||||+||..+|..|.+.| ..|++|
T Consensus 85 ~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l--~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 85 HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL--SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch--HHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 0 1122232222 11 00 011223333333 45899999999999999999998765 345666
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
|
T Consensus 163 L 163 (252)
T COG4604 163 L 163 (252)
T ss_pred c
Confidence 4
No 205
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.01 E-value=6.2e-10 Score=106.48 Aligned_cols=128 Identities=21% Similarity=0.270 Sum_probs=82.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------- 344 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+
T Consensus 10 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK10619 10 DLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLR 88 (257)
T ss_pred eeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHH
Confidence 334445445677887 77778888776 999999999999999999999999754322111
Q ss_pred ------cccccc--CCCC-CeeeeEeecc----ccc------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh-
Q 015085 345 ------SHLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 345 ------~~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
..+... -+++ +..+.+.+.. ... ....+++..|+.. .++....||+||+||++++|+|
T Consensus 89 ~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~ 168 (257)
T PRK10619 89 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 168 (257)
T ss_pred HHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 111111 1122 2222221100 000 0123456667753 2577899999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 169 ~~p~llllDEPt 180 (257)
T PRK10619 169 MEPEVLLFDEPT 180 (257)
T ss_pred cCCCEEEEeCCc
Confidence 78999999885
No 206
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.01 E-value=2.3e-10 Score=109.07 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=80.6
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.. +++|.+......
T Consensus 8 ~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 8 EARGLSFFYGDFQALHDI-SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEeeeEEEECCeeeecce-eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 334444555555677777 77778888776 99999999999999999864 467764422211
Q ss_pred --ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 87 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred hcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 1111111 1223333332211000 00 01234444552 13566789999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 167 ~p~llllDEPt 177 (253)
T PRK14242 167 EPEVLLMDEPA 177 (253)
T ss_pred CCCEEEEeCCc
Confidence 68889999885
No 207
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2e-10 Score=108.22 Aligned_cols=120 Identities=24% Similarity=0.253 Sum_probs=76.1
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccccC---CCC-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEAP---VPG- 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s~---~pg- 354 (413)
..++..+ ++...+|+.++ +|+||+|||||+++|.|++.|.+|.+...... +..+.+.+ +-+
T Consensus 17 ~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDV-SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeee-EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 4667777 67777776555 99999999999999999999999975321111 11111111 111
Q ss_pred CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+.+.+.+... ++. ..+.+...|+. ..++.+..|||||+||++||..| .|+.+.||+|.
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 11111111000 000 01334455664 35788999999999999999988 78889999874
No 208
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.01 E-value=2.1e-10 Score=120.88 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=83.8
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-----------IVSHL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-----------~v~~~ 347 (413)
|.+-...-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+|.|+|+++|.+|.+..+.. .+..+
T Consensus 335 I~~~~vsf~Y~~~~~vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGV-SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 555555555543 3478888 77777787666 9999999999999999999999998654332 23333
Q ss_pred cccC--CCCCeeeeEeeccc-cc-cc-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEAP--VPGTTLGIVRVEGV-LP-AQ-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s~--~pgtT~~~i~~~~~-l~-~~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
.+.+ +.||-++++.+... .. +. ....+..| +.. -...-..|||||+||+++||++ +++.+.
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333 35666666554211 00 00 11122222 211 0122356999999999999999 678888
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||++
T Consensus 494 LDE~ 497 (529)
T TIGR02868 494 LDEP 497 (529)
T ss_pred EeCC
Confidence 8886
No 209
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.1e-10 Score=102.43 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=75.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---------cCCCCC-----ee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------APVPGT-----TL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------s~~pgt-----T~ 357 (413)
..++..+ ++....|++.. .|+||+|||||+++|+|++.|.+|.+......+..... .+.+|. ..
T Consensus 15 ~~lf~~L-~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 15 RTLFSDL-SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred ceeecce-eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 4566666 56566677544 99999999999999999999999987654333222111 122332 22
Q ss_pred eeEeecccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccccCCCC
Q 015085 358 GIVRVEGVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~l~~~~ 413 (413)
+.+.+--.+.+ ....+...|+. ..+-....||.|+|+||++||-+. .-...||+|+
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 22222111111 11334455665 345778999999999999999883 3456777764
No 210
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.01 E-value=3e-10 Score=109.36 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=84.2
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV---------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v---------- 344 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|.+......+
T Consensus 20 l~~~nl~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDV-DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEEEeEEEEECCEEEEEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence 4444555566656678888 78888888776 999999999999999999874 778654222111
Q ss_pred ----cccccc--CCCCCeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 345 ----SHLTEA--PVPGTTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 345 ----~~~t~s--~~pgtT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
..+... .++++..+.+.+.... . . ...+++..|+. ..++....||+||+||+.++++|
T Consensus 99 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 99 RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 111111 1223333333211000 0 0 02245555663 23566889999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 179 ~~~p~lllLDEPt 191 (267)
T PRK14235 179 AVSPEVILMDEPC 191 (267)
T ss_pred HcCCCEEEEeCCC
Confidence 78899999885
No 211
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.01 E-value=8e-10 Score=106.40 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccccC----CCCCe
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEAP----VPGTT 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s~----~pgtT 356 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+.... .+..|
T Consensus 27 ~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 27 EAVKPL-SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred ceeeee-eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 577787 78788888777 999999999999999999999999754322111 1111110 11111
Q ss_pred e-eeEeeccc----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 L-GIVRVEGV----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~-~~i~~~~~----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. +.+.+... .. ....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 177 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 1 11110000 00 012356666773 23566789999999999999999 78999999885
No 212
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.00 E-value=6.6e-10 Score=102.74 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=79.8
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+..+.+|.+...... +.
T Consensus 7 l~~~~l~~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNV-SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEEEeCCCCcccccCc-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 334444445543 3577887 77777888776 99999999999999999999999975432211 11
Q ss_pred ccccc--CCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+... -++++..+.+....... ...+.+.-. .+.....||+||+||+.++|++ .|+.+.+|+|+
T Consensus 86 ~v~q~~~~~~~tv~~~l~~~~~~~-~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 86 IIPQDPTLFSGTIRSNLDPFDEYS-DEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred EEecCCcccCccHHHHhcccCCCC-HHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 11111 12333333332210000 001111111 2456788999999999999999 68888888874
No 213
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.00 E-value=2.4e-10 Score=106.72 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=78.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------ccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------------HLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------------~~t~s--~~pg 354 (413)
..+++.+ ++....|+++. +|+||+|||||+++|+|.+++.+|.+......+. .+... .++.
T Consensus 18 ~~il~~v-s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDI-NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4578887 77777888777 9999999999999999999999997543222111 11111 1222
Q ss_pred -CeeeeEeeccccc----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVLP----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l~----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|.
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~ 169 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPT 169 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222221100000 112455666775 34677889999999999999999 67888888874
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=4.4e-10 Score=105.48 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=78.1
Q ss_pred EeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccc
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t 348 (413)
+.+....++. ..+++.+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+...... +..+.
T Consensus 5 ~~~l~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 5 FENVNFSYDEKKPVLKDI-NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEEEEEecCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 3344445543 3477777 77778888766 99999999999999999999999975432211 11111
Q ss_pred cc--CCCCCeeeeEeeccccccc---ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 349 EA--PVPGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 349 ~s--~~pgtT~~~i~~~~~l~~~---~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.. .++++..+.+.+....... ...++.. |+. ..++....||+||+||+.++++| .|+.+.|
T Consensus 84 q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 84 QDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred CCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1122322322221000000 0011111 222 11344688999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 164 DEP~ 167 (229)
T cd03254 164 DEAT 167 (229)
T ss_pred eCcc
Confidence 8885
No 215
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.00 E-value=1.5e-10 Score=107.80 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=71.9
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-ccccccccc-cccCCCCCe-eeeEeeccc---ccc
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-EEKNIVSHL-TEAPVPGTT-LGIVRVEGV---LPA 368 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-~~~~~v~~~-t~s~~pgtT-~~~i~~~~~---l~~ 368 (413)
++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+. .....+... ...-+++.| .+.+.+... ...
T Consensus 3 l~~v-s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 3 LDKT-DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 3444 56667777776 999999999999999999999999764 221111000 011123322 233322110 000
Q ss_pred ---ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 ---QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ---~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+.+..++. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 00112223333 23567889999999999999999 67888998873
No 216
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.00 E-value=4e-10 Score=119.38 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=86.8
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc---CCCC-Cee
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA---PVPG-TTL 357 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s---~~pg-tT~ 357 (413)
......++...+++.+ ++....|++++ +|+||+|||||+++|+|+..|.+|.+..... .+..+... ..+. |..
T Consensus 326 ~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~ 404 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDL-SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVW 404 (552)
T ss_pred eeEEEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHH
Confidence 3344556656688888 78888888776 9999999999999999999999997653211 12233222 1222 333
Q ss_pred eeEeeccc---ccc----cccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~----~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+..... ... ...+++..|+.. .++.+..||+||+||+++++++ .|+.+.||+|+
T Consensus 405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 33222110 000 123566677742 4678899999999999999999 68889999885
No 217
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=9.9e-10 Score=104.75 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=80.6
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc-------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV------------- 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v------------- 344 (413)
.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+++. +|.+......+
T Consensus 8 ~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (253)
T PRK14267 8 VNLRVYYGSNHVIKGV-DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRRE 86 (253)
T ss_pred EeEEEEeCCeeeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhc
Confidence 3444555555678888 78778888777 9999999999999999998863 77654222111
Q ss_pred -cccccc--CCCC-CeeeeEeecccc-----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 -SHLTEA--PVPG-TTLGIVRVEGVL-----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 -~~~t~s--~~pg-tT~~~i~~~~~l-----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... -+++ |..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 87 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14267 87 VGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM 166 (253)
T ss_pred eeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc
Confidence 111111 1222 222222110000 00 01234444542 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 167 ~p~llllDEP~ 177 (253)
T PRK14267 167 KPKILLMDEPT 177 (253)
T ss_pred CCCEEEEcCCC
Confidence 67889999884
No 218
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.00 E-value=3.3e-10 Score=120.00 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=83.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC--CCC-Ceee
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--VPG-TTLG 358 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~--~pg-tT~~ 358 (413)
.....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+.... ..+..+...+ ++. |..+
T Consensus 9 nls~~~~~~~~il~~i-s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e 87 (552)
T TIGR03719 9 RVSKVVPPKKEILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRE 87 (552)
T ss_pred eEEEecCCCCeeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHH
Confidence 3444555 45688888 78888888666 999999999999999999999999754321 1222222221 122 3333
Q ss_pred eEeeccc-----------------c-cc---------------------------cccccccccccCCCCCCCCCCHHHH
Q 015085 359 IVRVEGV-----------------L-PA---------------------------QAKLFDTPGLLHPNQITTRLTREEQ 393 (413)
Q Consensus 359 ~i~~~~~-----------------l-~~---------------------------~~~liDtpGl~~~~~~~~~LS~ge~ 393 (413)
.+.+... . .. ...+++..|+...++....||+||+
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk 167 (552)
T TIGR03719 88 NVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGER 167 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHH
Confidence 3221100 0 00 0113344455434677899999999
Q ss_pred HHHHHhhhh--cCCccccCCCC
Q 015085 394 KLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 394 q~v~i~r~l--~~~~~~l~~~~ 413 (413)
||+.+++++ .|+.+.||+|+
T Consensus 168 qrv~la~al~~~p~lLLLDEPt 189 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPT 189 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCC
Confidence 999999999 68899999985
No 219
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=5.2e-10 Score=106.58 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=81.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+ .+|.+......+
T Consensus 7 ~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (251)
T PRK14270 7 SKNLNLWYGEKQALNDI-NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK 85 (251)
T ss_pred EEEeEEEECCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh
Confidence 34444555555677777 77777888776 999999999999999999865 677644222111
Q ss_pred --cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+|++.+++++ .
T Consensus 86 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 165 (251)
T PRK14270 86 RVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVK 165 (251)
T ss_pred heEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 111111 1223333333221000 00 01345555542 23567889999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 166 p~llllDEP~ 175 (251)
T PRK14270 166 PDVILMDEPT 175 (251)
T ss_pred CCEEEEeCCc
Confidence 8999999885
No 220
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.6e-10 Score=110.03 Aligned_cols=119 Identities=24% Similarity=0.283 Sum_probs=78.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccccC----C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEAP----V 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s~----~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+......+ ..+...+ +
T Consensus 20 ~~l~~v-sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDI-DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 477777 77778888766 999999999999999999999999754322111 1111111 1
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|..+.+.+... ... ...+++..|+. ..++....||+||+||++++++| .|+...||+|.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt 172 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 2233333222100 000 12345555763 24678899999999999999999 68888888874
No 221
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=3.5e-10 Score=108.91 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=81.1
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +++|.+......
T Consensus 23 ~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDI-SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEEeCCceeeece-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 344445566656678887 77778888776 99999999999999999764 577865422211
Q ss_pred --ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 102 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 1111111 1233333322211000 00 01223344442 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 182 ~p~lllLDEPt 192 (268)
T PRK14248 182 KPAVLLLDEPA 192 (268)
T ss_pred CCCEEEEcCCC
Confidence 68899999885
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=5e-10 Score=106.42 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=80.5
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccc------------cccccc
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~------------v~~~t~ 349 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+...... +..+..
T Consensus 8 l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 86 (246)
T PRK14269 8 LNLFYGKKQALFDI-NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQ 86 (246)
T ss_pred eEEEECCEeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEec
Confidence 34455545677777 77777888776 99999999999999999874 577865422111 111111
Q ss_pred c--CCCCCeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 350 A--PVPGTTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 350 s--~~pgtT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
. -++.+..+.+.+.... . . ...+++..|+. ..++....||+||+||++++|++ .|+.+.|
T Consensus 87 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 87 QPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred CCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1233333333221000 0 0 11345555662 13566788999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 167 DEP~ 170 (246)
T PRK14269 167 DEPT 170 (246)
T ss_pred cCCc
Confidence 9885
No 223
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.99 E-value=5.1e-10 Score=116.91 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=80.7
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... .+
T Consensus 7 ~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 7 SFPGVKALDNV-NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred EeCCEEeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 34445677787 77778888766 99999999999999999999999975432211 1111111 11
Q ss_pred CC-CeeeeEeeccc-c-----c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGV-L-----P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~-l-----~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+... . . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 22 22222221100 0 0 011244445664 34677899999999999999999 58999999985
No 224
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.1e-09 Score=104.81 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+......|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..+ ++|.+......+
T Consensus 7 i~~v~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~ 85 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDV-NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR 85 (258)
T ss_pred EeeEEEEECCEeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc
Confidence 34444555545678887 77778888776 999999999999999999874 578654322111
Q ss_pred --cccccc--CCCC-CeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 --SHLTEA--PVPG-TTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 --~~~t~s--~~pg-tT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... .++. |..+.+.+.... .. ...+++..|+. ..++....||+||+||+++++++
T Consensus 86 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (258)
T PRK14241 86 TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165 (258)
T ss_pred ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 111110 1121 222222110000 00 01234444541 23577889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 166 ~p~llllDEPt 176 (258)
T PRK14241 166 EPDVLLMDEPC 176 (258)
T ss_pred CCCEEEEcCCC
Confidence 68899999885
No 225
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.2e-10 Score=112.01 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=78.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------------------c
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------------------V 344 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------------------v 344 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.+|.+...... +
T Consensus 40 ~~L~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 40 VALNNI-SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 478888 78778888777 99999999999999999999999975432211 1
Q ss_pred cccccc----CCCCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 345 SHLTEA----PVPGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 345 ~~~t~s----~~pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
..+... -++.|..+.+.+... .. ....+++..|+. ..++....||+||+||++++|+| .|+.+
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 111111 112222222221100 00 011345555664 24677889999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 199 LLDEPt 204 (320)
T PRK13631 199 IFDEPT 204 (320)
T ss_pred EEECCc
Confidence 998874
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.99 E-value=1.5e-09 Score=103.42 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=76.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCccccccccccc-------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIVSHLT------------- 348 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v~~~t------------- 348 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..+.+|.+......+....
T Consensus 12 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 90 (252)
T CHL00131 12 NLHASVNENEILKGL-NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAF 90 (252)
T ss_pred eEEEEeCCEEeeecc-eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEe
Confidence 333445444577777 77778888776 999999999999999997 4678887543221111110
Q ss_pred c--cCCCCCee-eeEeeccc-------cc---------cccccccccccc--CCCCCCC-CCCHHHHHHHHHhhhh--cC
Q 015085 349 E--APVPGTTL-GIVRVEGV-------LP---------AQAKLFDTPGLL--HPNQITT-RLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 349 ~--s~~pgtT~-~~i~~~~~-------l~---------~~~~liDtpGl~--~~~~~~~-~LS~ge~q~v~i~r~l--~~ 404 (413)
. ..++++|. +.+.+... .. ....+++..|+. ..++... .||+||+||+.+++++ .|
T Consensus 91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 170 (252)
T CHL00131 91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS 170 (252)
T ss_pred ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCC
Confidence 0 01122221 11100000 00 001233444553 1245555 5999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 171 ~llllDEPt 179 (252)
T CHL00131 171 ELAILDETD 179 (252)
T ss_pred CEEEEcCCc
Confidence 899999885
No 227
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.98 E-value=4e-10 Score=104.68 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=75.4
Q ss_pred cchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc--cCCCC-CeeeeEee
Q 015085 297 DDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE--APVPG-TTLGIVRV 362 (413)
Q Consensus 297 ~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~--s~~pg-tT~~~i~~ 362 (413)
..+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+......+ ..+.. ..+++ |..+.+.+
T Consensus 15 ~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 15 MEF-DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eee-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 344 66677788777 999999999999999999999999754322111 11111 11222 22333321
Q ss_pred ccc--c--c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 363 EGV--L--P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 363 ~~~--l--~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 100 0 0 012345555664 34677889999999999999999 67888888874
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.6e-09 Score=101.93 Aligned_cols=115 Identities=21% Similarity=0.182 Sum_probs=74.9
Q ss_pred chhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc--cCCCCCe-eeeEeec
Q 015085 298 DVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE--APVPGTT-LGIVRVE 363 (413)
Q Consensus 298 ~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~--s~~pgtT-~~~i~~~ 363 (413)
.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+.. ..+++.| .+.+.+.
T Consensus 17 ~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RF-DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred ee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 44 67777788776 999999999999999999999999754322211 11111 1123322 2222211
Q ss_pred ccc----c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 GVL----P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 ~~l----~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . ....+++..|+. ..++.+..||+||+|++.+++++ .|+.+.||+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 000 0 012345555664 34678889999999999999999 68899999885
No 229
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=4.6e-10 Score=119.04 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-ccccccccC---CCC-Ce
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEAP---VPG-TT 356 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s~---~pg-tT 356 (413)
+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+.... .+. |.
T Consensus 327 ~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 327 AENLSKSFGDRLLIDDL-SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred EEeEEEEECCeeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCH
Confidence 34445566666688888 78888888766 9999999999999999999999997653211 122222221 122 22
Q ss_pred eeeEeeccc---cc----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV---LP----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~---l~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 406 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 406 WEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred HHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 232221100 00 011345666774 24678899999999999999999 78999999985
No 230
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.98 E-value=1.1e-09 Score=105.33 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=78.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC---C-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP---V- 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~---~- 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+...+ +
T Consensus 24 ~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNV-SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4577777 77778888776 99999999999999999999999975432211 11111111 1
Q ss_pred CCCe-eeeEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.... .+. ....+++..|+. ..++....||+||+|++.++|++ .|+.+.||+|+
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt 178 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAV 178 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11111000 000 012345666773 24677889999999999999999 68888888875
No 231
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=7e-10 Score=107.93 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=80.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s----~~ 352 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+..|.+......+ ..+... .+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDV-NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred Cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 478888 78888888766 999999999999999999999999754322111 111111 11
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt 173 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 2233333322100 000 12455566774 24677899999999999999999 78888888874
No 232
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.3e-10 Score=108.44 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=81.2
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++ +++|.+......
T Consensus 15 ~i~nl~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 15 SLQNVTISYGTFEAVKNV-FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEEeEEEEECCEEEEcce-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 334444556655678888 78878888776 99999999999999999986 477765422211
Q ss_pred --ccccccc--CCCCCeeeeEeeccccc---c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVLP---A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l~---~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.|..+.+.+..... . ...+++..|+. ..++....||+||+||+++++++ .|
T Consensus 94 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 173 (269)
T PRK14259 94 RRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173 (269)
T ss_pred hceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 12222233222110000 0 01123333431 23567788999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 174 ~lllLDEPt 182 (269)
T PRK14259 174 EVILMDEPC 182 (269)
T ss_pred CEEEEcCCC
Confidence 999999885
No 233
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=1.1e-09 Score=106.23 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=78.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------ccccccC---CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEAP---VPGT 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s~---~pgt 355 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+ ..+...+ ..++
T Consensus 23 ~~vl~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDV-NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 3578887 78888888776 999999999999999999999999754332111 1111111 1111
Q ss_pred e-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1 122211100 000 11345555664 34678899999999999999999 67888888874
No 234
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.98 E-value=8.6e-10 Score=103.83 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=72.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------ccccc--CCCC-CeeeeEeecc-----
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------HLTEA--PVPG-TTLGIVRVEG----- 364 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------~~t~s--~~pg-tT~~~i~~~~----- 364 (413)
++....|++++ +|+||+|||||+++|+|+.++.+|.+......+. .+... -++. |..+.+.+..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 44556677766 9999999999999999999999997653222111 11111 1121 2222222110
Q ss_pred cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 ~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0000 12345555664 24577889999999999999999 68999999884
No 235
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=9.6e-10 Score=108.90 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=76.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCcccccc----------------cccccccC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNI----------------VSHLTEAP- 351 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~----------------v~~~t~s~- 351 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|++.+ .+|.+...... +..+.+.+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRI-SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 578888 78888898777 999999999999999999873 56654322211 11222211
Q ss_pred ---CCCCeee-eEeecc----ccc------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 352 ---VPGTTLG-IVRVEG----VLP------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 352 ---~pgtT~~-~i~~~~----~l~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.|..|.. .+.... ... ....+++..|+.. .++..+.||+||+||++++++| .|+.+.+|+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 1222221 000000 000 0124556667742 3578899999999999999999 688888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 180 Pt 181 (326)
T PRK11022 180 PT 181 (326)
T ss_pred CC
Confidence 74
No 236
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4e-10 Score=107.90 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|++......+
T Consensus 15 ~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 93 (258)
T PRK14268 15 VENLNLWYGEKQALKNV-SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK 93 (258)
T ss_pred EeeeEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh
Confidence 34444556555677887 77778888776 999999999999999999874 678644322111
Q ss_pred --cccccc--CCCCCeeeeEeeccc---ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|
T Consensus 94 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 173 (258)
T PRK14268 94 NVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP 173 (258)
T ss_pred hEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 111111 122222232221100 000 01244555542 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 174 ~llllDEPt 182 (258)
T PRK14268 174 KIILFDEPT 182 (258)
T ss_pred CEEEEeCCC
Confidence 999999885
No 237
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=5.9e-10 Score=102.03 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=65.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccccCCCCCeeeeEeeccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~ 369 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.. .+.+|.+......+. .... ....++.....+...
T Consensus 20 ~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~-~~i~~~~q~~~~~~~ 93 (192)
T cd03232 20 RQLLNNI-SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ-RSTGYVEQQDVHSPN 93 (192)
T ss_pred eEeEEcc-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh-hceEEecccCccccC
Confidence 3577777 77777888776 9999999999999999975 367786442221111 0000 001111110000001
Q ss_pred ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 370 AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 370 ~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.|.-.+.. ....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~tv~~~l~~~~---~~~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 94 LTVREALRFSA---LLRGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred CcHHHHHHHHH---HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 11111111100 0127999999999999999 67888888874
No 238
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=8.4e-10 Score=107.57 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=79.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccccC----C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEAP----V 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s~----~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+...+ +
T Consensus 21 ~~L~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 21 RALYDV-NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred cceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 478888 78888888777 999999999999999999999999764332211 1111110 1
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. . .++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt 173 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1222222221100 000 12345566774 2 4677899999999999999999 78888888874
No 239
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=1.2e-09 Score=101.62 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=77.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHL 347 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~ 347 (413)
...+.||...+ .+ ++...+ ++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+
T Consensus 5 ~l~~~~~~~~~--~v-sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KI-DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--Cc-eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 33455555443 55 666667 7666 999999999999999999999999754322111 111
Q ss_pred ccc--CCCCCe-eeeEeecccc-c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL-P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l-~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... -+++.| .+.+.+.... . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 112222 2222111000 0 012345555664 24577889999999999999999 68889999884
No 240
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.97 E-value=7.9e-10 Score=104.02 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=70.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCcccccc----------cccccccC---C-CCCee-eeE
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNI----------VSHLTEAP---V-PGTTL-GIV 360 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~----------v~~~t~s~---~-pgtT~-~~i 360 (413)
++....|++++ +|+||+|||||+++|+|+.+| ++|.+...... +..+.... + +..|. +.+
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHH
Confidence 45556777766 999999999999999999998 78875432211 11111111 1 11111 100
Q ss_pred eeccc---c-c-----cccccccccccc----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGV---L-P-----AQAKLFDTPGLL----HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~---l-~-----~~~~liDtpGl~----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..... . . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt 153 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00000 0 0 012344455554 23567889999999999999999 68899999885
No 241
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.97 E-value=2e-10 Score=103.53 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=81.2
Q ss_pred eEEEeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-----------cccccccc-
Q 015085 284 VSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-----------NIVSHLTE- 349 (413)
Q Consensus 284 vSa~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-----------~~v~~~t~- 349 (413)
.+..+.|+... .++++ ++..+.|++.. +|+||+||||++++|+.++.|++|.+.... ..+..++.
T Consensus 5 ~~l~K~y~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 5 TDLTKSYGSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred eehhhhccCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC
Confidence 34445555422 45555 66778888887 999999999999999999999999754221 11111110
Q ss_pred cCC--CCCeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APV--PGTTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~--pgtT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+ .-|..+.+.+.+.+.+ ...+.+..++. ..++.+..+|.|.+|+|.+||+| +|+.+.+|+|.
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 000 0122222322222111 01344444554 34677889999999999999999 78899999874
No 242
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=4.5e-10 Score=107.24 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc--------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI-------------- 343 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~-------------- 343 (413)
......|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.+. +|.+......
T Consensus 11 ~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (254)
T PRK14273 11 ENLNLFYTDFKALNNI-NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK 89 (254)
T ss_pred eeeEEEeCCceeecce-eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence 3334455545678887 78778888776 9999999999999999999864 6764322111
Q ss_pred ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+||++++|+| .|
T Consensus 90 i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 90 IGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred eEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1111111 1122222222211000 00 01122333431 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 170 ~lllLDEPt 178 (254)
T PRK14273 170 NVILMDEPT 178 (254)
T ss_pred CEEEEeCCC
Confidence 999999885
No 243
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.97 E-value=4.9e-10 Score=120.60 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=82.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-cccccccC---CCCCee
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-VSHLTEAP---VPGTTL 357 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-v~~~t~s~---~pgtT~ 357 (413)
+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|...|++|.+...... +..+.... ..++..
T Consensus 6 i~~ls~~~~~~~il~~i-s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNA-ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred EeeEEEEeCCceeEeCc-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence 34445566767788888 77777787665 99999999999999999999999976432211 11111100 001111
Q ss_pred eeEe------------------------------eccc----c---------cccccccccccccCCCCCCCCCCHHHHH
Q 015085 358 GIVR------------------------------VEGV----L---------PAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 358 ~~i~------------------------------~~~~----l---------~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
+.+. .... + .....+++..|+. .++.+..|||||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekq 163 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLR 163 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHH
Confidence 1000 0000 0 0011234455664 36788999999999
Q ss_pred HHHHhhhh--cCCccccCCCC
Q 015085 395 LVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 395 ~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+.++++| .|+.+.||+|+
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt 184 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPT 184 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCC
Confidence 99999999 68999999985
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.97 E-value=1.5e-09 Score=103.13 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=41.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG 338 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~ 338 (413)
+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+. ++.+|.+.
T Consensus 6 nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~ 61 (248)
T PRK09580 6 DLHVSVEDKAILRGL-NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61 (248)
T ss_pred EEEEEeCCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE
Confidence 334455545678887 77777888766 9999999999999999995 58888654
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.6e-09 Score=116.56 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=85.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc--CCCCCeee
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA--PVPGTTLG 358 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s--~~pgtT~~ 358 (413)
+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|...|++|.+..... .+..+... ....+..+
T Consensus 4 i~nls~~~g~~~~l~~v-s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~ 82 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNA-TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALE 82 (638)
T ss_pred EEEEEEEeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHH
Confidence 34556677877889998 78888887666 9999999999999999999999997653221 11111110 00111111
Q ss_pred eEeec---------------------------cc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhh
Q 015085 359 IVRVE---------------------------GV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 359 ~i~~~---------------------------~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r 400 (413)
.+... .. .. ....+++..|+. ..++.+..|||||+||+.+++
T Consensus 83 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHH
Confidence 11000 00 00 011345566774 346788999999999999999
Q ss_pred hh--cCCccccCCCC
Q 015085 401 EL--KPRTYRIKVSL 413 (413)
Q Consensus 401 ~l--~~~~~~l~~~~ 413 (413)
+| .|+.+.||+|.
T Consensus 163 aL~~~P~lLLLDEPt 177 (638)
T PRK10636 163 ALICRSDLLLLDEPT 177 (638)
T ss_pred HHccCCCEEEEcCCC
Confidence 99 68999999884
No 246
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.97 E-value=5.7e-10 Score=104.55 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=81.2
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 90 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDV-SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90 (226)
T ss_pred EEEEEEEEEeCCCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhE
Confidence 334444445542 2477777 77777888776 99999999999999999999999975422211 1
Q ss_pred cccccc--CCCCCeeeeEeeccccc------c------cccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVLP------A------QAKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l~------~------~~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... -++++..+.+.+..... . ...+++.. |+. ..++....||+||+||+.+++++ .|+
T Consensus 91 ~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (226)
T cd03248 91 SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170 (226)
T ss_pred EEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 111111 11223333222111000 0 00122222 554 23566889999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 171 llllDEPt 178 (226)
T cd03248 171 VLILDEAT 178 (226)
T ss_pred EEEEeCCc
Confidence 89999885
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.97 E-value=9.4e-10 Score=115.19 Aligned_cols=126 Identities=21% Similarity=0.218 Sum_probs=80.4
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCcccccc-------------ccccccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNI-------------VSHLTEA 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~-------------v~~~t~s 350 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+...
T Consensus 8 ~~~~~~~~il~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 86 (500)
T TIGR02633 8 VKTFGGVKALDGI-DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQE 86 (500)
T ss_pred EEEeCCeEeecce-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeec
Confidence 3445555678888 78888888766 999999999999999999986 67875432211 1111111
Q ss_pred --CCCCCe-eeeEeecccc-------c------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 351 --PVPGTT-LGIVRVEGVL-------P------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~l-------~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.++..| .+.+.+.... . ....+++..|+.. .++.+..||+||+||+.++++| .|+.+.||
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD 166 (500)
T TIGR02633 87 LTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD 166 (500)
T ss_pred cccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 112212 1222111000 0 0123455566642 2466889999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 167 EPt 169 (500)
T TIGR02633 167 EPS 169 (500)
T ss_pred CCC
Confidence 985
No 248
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.97 E-value=1.6e-09 Score=101.33 Aligned_cols=119 Identities=19% Similarity=0.232 Sum_probs=75.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-c---c----------------ccccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-N---I----------------VSHLTEA-- 350 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~---~----------------v~~~t~s-- 350 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+.... . . +..+...
T Consensus 22 ~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 22 PVLKNV-SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEEecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 577777 77777888777 999999999999999999999999754321 0 1 1111111
Q ss_pred CCCCCe-eeeEeeccc---cc------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+..| .+.+..... .. ....+++..|+.. .++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 011111 111111000 00 0112445556642 2567889999999999999999 57888888874
No 249
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=5.1e-10 Score=108.63 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=82.1
Q ss_pred eEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC---CCCccccc------------ccc
Q 015085 284 VSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGDGEEKN------------IVS 345 (413)
Q Consensus 284 vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~---G~~~~~~~------------~v~ 345 (413)
.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.. |.+..... .+.
T Consensus 9 ~~l~~~~~~~~~~~l~~v-~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDI-SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEcCCCCccceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 344445532 3477777 77777888766 99999999999999999999887 55432211 112
Q ss_pred cccccC---C-CCCeeeeEeeccccc---c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEAP---V-PGTTLGIVRVEGVLP---A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s~---~-pgtT~~~i~~~~~l~---~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+...+ + ..|..+.+.+..... . ...+++..|+. ..++....||+||+||+.++++| .|+.+.+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222211 1 223333332210000 0 12345555665 34677899999999999999999 7888888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (282)
T PRK13640 168 DEST 171 (282)
T ss_pred ECCc
Confidence 8874
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=3.9e-10 Score=109.63 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=81.2
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v----------- 344 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 41 ~i~~l~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 41 EARDLNVFYGDEQALDDV-SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEEEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 334444556555678888 77777888776 99999999999999999986 5778654322111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---cc-----cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LP-----AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~-----~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++++..+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|
T Consensus 120 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 120 RRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred ccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111111 112222222211100 00 001234444542 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 200 ~lLLLDEPt 208 (285)
T PRK14254 200 EVILMDEPA 208 (285)
T ss_pred CEEEEeCCC
Confidence 999999885
No 251
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.96 E-value=3.7e-10 Score=121.25 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------------cccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------------IVSH 346 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------------~v~~ 346 (413)
.+++.| ++....|++++ +|+||+|||||+++|+|++.+.+|.+..... .+..
T Consensus 30 ~~l~~i-s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 30 AAVRNL-SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eEEEee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 578888 78778888777 9999999999999999999998886532110 1111
Q ss_pred ccccC----CCCCe-eeeEeecccc----c------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 347 LTEAP----VPGTT-LGIVRVEGVL----P------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 347 ~t~s~----~pgtT-~~~i~~~~~l----~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
+...+ .|..| .+.+.+.... . ....+++..|+.. .++.+..||+||+||+++|++| .|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 11111 12212 1222111000 0 0123456667742 3678899999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 189 lLllDEPt 196 (623)
T PRK10261 189 VLIADEPT 196 (623)
T ss_pred EEEEeCCC
Confidence 99999884
No 252
>PRK13409 putative ATPase RIL; Provisional
Probab=98.96 E-value=3.1e-10 Score=120.71 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=77.8
Q ss_pred eecCcc-hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-----------cccccccc--------
Q 015085 288 KNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSH-------- 346 (413)
Q Consensus 288 ~~~Gi~-~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-----------~~~~~v~~-------- 346 (413)
+.||.. ..+..+ . ...+|++++ +|+||+|||||+++|+|.+.|+.|.+. .....+..
T Consensus 81 ~~yg~~~~~L~~l-~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 81 HRYGVNGFKLYGL-P-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred EEecCCceeEecC-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 455543 356666 3 456777766 999999999999999999999999864 11111100
Q ss_pred -ccccCCC-----------CCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 -LTEAPVP-----------GTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 -~t~s~~p-----------gtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
......+ ++..+.+...........+++..|+. ..++.+..||+||+||+++++++ .|+.|.||+
T Consensus 159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE 238 (590)
T PRK13409 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238 (590)
T ss_pred CcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0000001 11111111000000112455666775 35788999999999999999999 689999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 239 Pt 240 (590)
T PRK13409 239 PT 240 (590)
T ss_pred CC
Confidence 84
No 253
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.96 E-value=8.5e-10 Score=102.96 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=74.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|...+.+|.+......+ ..+... .++++..+
T Consensus 18 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 18 PVLKNI-SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred ccccce-EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 577777 77778888777 999999999999999999999999754322111 111111 11223333
Q ss_pred eEeeccccc--ccccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP--AQAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~--~~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+....... .....++..|+ . ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~ 167 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 222110000 00111111222 1 11356789999999999999999 68888888874
No 254
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4.7e-10 Score=118.30 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=86.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC---C-CCC
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP---V-PGT 355 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~---~-pgt 355 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+.... ..+..+.... + +..
T Consensus 321 ~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 321 EVENLTKGFDNGPLFKNL-NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEEeeEEeeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 344445566656678888 78788888766 999999999999999999999999764322 1222222221 1 112
Q ss_pred e-eeeEeeccc--ccc--ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGV--LPA--QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~--l~~--~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+..... ... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 2 222211000 000 12345556663 34688999999999999999999 68899999885
No 255
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.96 E-value=1.6e-09 Score=102.36 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=79.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCCC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPGT 355 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pgt 355 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+...... +..+... .+++.
T Consensus 9 ~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 9 RFGSFQALDDV-NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred EECCeeeeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 44445678877 77778888777 99999999999999999999998875322111 1111111 12332
Q ss_pred e-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+.... . ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|.
T Consensus 88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2 2222211000 0 012345555654 24577889999999999999999 57888888874
No 256
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.96 E-value=1.2e-09 Score=108.37 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=76.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccc----------------cccccccC-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNI----------------VSHLTEAP- 351 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~----------------v~~~t~s~- 351 (413)
..+++.+ ++...+|+++. +|+||+|||||+++|+|++.+. +|.+...... +..+...+
T Consensus 29 ~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 29 VTAVNDL-NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEEeee-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 4567777 78778888777 9999999999999999999885 7765422211 22222211
Q ss_pred ---CCCCeeee-Eeecc----ccc------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 352 ---VPGTTLGI-VRVEG----VLP------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 352 ---~pgtT~~~-i~~~~----~l~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.|..|... +.... ... ....+++..|+.. .++..+.|||||+||+++|++| .|+.+.+|+
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE 187 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 12222211 10000 000 0123455556542 2568899999999999999999 688888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 188 Pt 189 (330)
T PRK09473 188 PT 189 (330)
T ss_pred CC
Confidence 74
No 257
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.96 E-value=2.7e-09 Score=101.87 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=75.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCccccccc----------ccccccC---C-C
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNIV----------SHLTEAP---V-P 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~v----------~~~t~s~---~-p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+......+ ..+.... + +
T Consensus 16 ~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 16 QPLVHGV-SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred cceecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 3567777 77778888776 999999999999999999988 888654322111 1111110 0 0
Q ss_pred CCee-eeEeec---cccc----ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVE---GVLP----AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~---~~l~----~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|. +.+... .... ....+++..|+.. .++....||+||+|++.++++| .|+.+.||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0110 000000 0000 0122445556543 2567889999999999999999 68888888874
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.96 E-value=8.1e-10 Score=118.96 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=85.4
Q ss_pred eEEEeEEEeecCcc--hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------ccc
Q 015085 280 KLHFVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIV 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~--~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v 344 (413)
+|.+-...-.|+.+ .+++.+ ++..+.|+.+. +|.||||||||+|.|+|++.|..|.+.-+. ..+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~i-sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDL-SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhce-eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 45665566666655 678888 77777776555 999999999999999999999999865332 223
Q ss_pred ccccccC--CCCCeeeeEeeccccccc---c----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPAQ---A----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~~---~----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.. +.|+.++.+......... . .+...| |+. .-...-..|||||+||+++||++ +|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 3333322 355666555432111100 0 111122 221 11233466999999999999999 788
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
...||++
T Consensus 630 ILlLDEa 636 (709)
T COG2274 630 ILLLDEA 636 (709)
T ss_pred EEEEeCc
Confidence 8988886
No 259
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.96 E-value=1.3e-09 Score=108.16 Aligned_cols=119 Identities=22% Similarity=0.247 Sum_probs=78.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~----~p 353 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.+|.+...... +..+.+.+ .|
T Consensus 35 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 35 KAVDGV-TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred EEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 467777 77778888776 99999999999999999999999975432211 22222221 22
Q ss_pred CCe-eeeEeecc-----cccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTT-LGIVRVEG-----VLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT-~~~i~~~~-----~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..| .+.+.... .+.. ...+++..|+. ..++....|||||+||+++|++| .|+.+.+|+|.
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222 22221100 0110 12345666763 24688899999999999999999 68888888874
No 260
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.95 E-value=6.9e-10 Score=114.42 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=78.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc-------------------CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA-------------------PVP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s-------------------~~p 353 (413)
..++.+ ++...+|+++. ||.+|||||||.++|+|+.+|..|.+......+ .++.+ -.|
T Consensus 305 ~Av~~V-Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 305 KAVDDV-SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeee-eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccccchhhhhhhheEEEEeCcccccCc
Confidence 456666 67777888777 999999999999999999999888755333221 11111 112
Q ss_pred CCee-eeEeeccccc----------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVEGVLP----------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~~~l~----------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|+ +.+..+.... ...++++..|+.. .++++++|||||+||++|||+| .|+...+|+|.
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 1111 1111100000 0135677888864 5799999999999999999999 67777777763
No 261
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.95 E-value=4.9e-10 Score=120.62 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc---CCCC-Ce
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA---PVPG-TT 356 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s---~~pg-tT 356 (413)
+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.|++|.+..... .+.++... -.+. |.
T Consensus 322 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 322 MENVNYQIDGKQLVKDF-SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTV 400 (635)
T ss_pred EeeeEEEECCeEEEcCc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCH
Confidence 34455667666788888 77778887665 9999999999999999999999997653211 12222221 1122 22
Q ss_pred eeeEeeccc-c--c----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV-L--P----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~-l--~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... . . ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|.
T Consensus 401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 232221100 0 0 012334455553 24677899999999999999999 58899999884
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=9e-10 Score=103.85 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccc--cCCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTE--APVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~--s~~pgtT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+.. .-+++|..
T Consensus 14 ~~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDV-SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred Cceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 4467777 77777888776 999999999999999999999999754322111 11111 11233333
Q ss_pred eeEeecccc-c-cc-ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVL-P-AQ-AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l-~-~~-~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.... . .. ....+.. |+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 333221000 0 00 0001111 221 12344678999999999999999 68888888885
No 263
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.95 E-value=3.5e-10 Score=119.04 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccc-----------------------
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEK----------------------- 341 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~----------------------- 341 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|+. .|++|.+....
T Consensus 8 ~~~~~~~~l~~i-s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g 86 (520)
T TIGR03269 8 KKFDGKEVLKNI-SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCG 86 (520)
T ss_pred EEECCeEeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccc
Confidence 445555678888 77778888766 9999999999999999996 68888653210
Q ss_pred c----------------------cccccccc---CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCC
Q 015085 342 N----------------------IVSHLTEA---PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQIT 385 (413)
Q Consensus 342 ~----------------------~v~~~t~s---~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~ 385 (413)
. .+..+... .++..| .+.+.+... .. ....+++..|+. ..++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 166 (520)
T TIGR03269 87 GTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166 (520)
T ss_pred ccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCc
Confidence 0 00000010 011111 111111000 00 011245555664 236778
Q ss_pred CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 386 TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..||+||+||+++|++| .|+.+.||+|+
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt 196 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPT 196 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCc
Confidence 99999999999999999 68899999985
No 264
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=6.2e-10 Score=108.29 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=79.2
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 42 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~ 120 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKV-NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120 (286)
T ss_pred EeeeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence 33444555545677777 77778888776 99999999999999999854 3778644222111
Q ss_pred --cccccc--CCCCCeeeeEeeccc---ccc-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV---LPA-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~---l~~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++++..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .
T Consensus 121 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 200 (286)
T PRK14275 121 KIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVE 200 (286)
T ss_pred cEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111111 112222222221100 000 01233344442 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 201 p~lllLDEPt 210 (286)
T PRK14275 201 PEILLLDEPT 210 (286)
T ss_pred CCEEEEeCCC
Confidence 8999999885
No 265
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.1e-09 Score=108.77 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=77.5
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc----CCCCCCccccc----------------ccccccc
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD----AGRGGDGEEKN----------------IVSHLTE 349 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~----~~~G~~~~~~~----------------~v~~~t~ 349 (413)
|...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+ +++|.+..... .+..+.+
T Consensus 18 ~~~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 18 GWVKAVDRV-SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCEEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 334577787 78788888777 99999999999999999986 46675432211 1222222
Q ss_pred cC----CCCCee-eeEeec-------ccc--------cccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 AP----VPGTTL-GIVRVE-------GVL--------PAQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 s~----~pgtT~-~~i~~~-------~~l--------~~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+ .|..|+ +.+... ..+ .....+++..|+.. .++....||+||+||++++++| .
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 21 122221 111000 000 01124556667752 2578899999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 177 P~llilDEPt 186 (330)
T PRK15093 177 PRLLIADEPT 186 (330)
T ss_pred CCEEEEeCCC
Confidence 8889988874
No 266
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.95 E-value=1.2e-09 Score=103.07 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=73.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .++.|..
T Consensus 15 ~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNI-SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 4577777 77777888777 99999999999999999999999975432211 1111111 1122222
Q ss_pred eeEeeccc-ccc-c-c---------cccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LPA-Q-A---------KLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~~-~-~---------~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... . . .+++.. |+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 166 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT 166 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 32222100 000 0 0 011111 221 12356789999999999999999 68889998874
No 267
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=7.3e-10 Score=105.58 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=79.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc--------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI-------------- 343 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~-------------- 343 (413)
.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+. .|.+......
T Consensus 8 ~~l~~~~~~~~il~~~-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14249 8 RGVNFFYHKHQVLKNI-NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKR 86 (251)
T ss_pred EEEEEEECCeeEecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhce
Confidence 3444455545577777 77777888777 9999999999999999999886 4654322111
Q ss_pred ccccccc--CCCCCeeeeEeeccccc----c------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEA--PVPGTTLGIVRVEGVLP----A------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s--~~pgtT~~~i~~~~~l~----~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.+..+.+.+..... . ...+++..|+. ..++....||+||+||+.+++++ .|
T Consensus 87 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 166 (251)
T PRK14249 87 VGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEP 166 (251)
T ss_pred EEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 12333333332210000 0 00122233432 23577889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 167 ~lllLDEPt 175 (251)
T PRK14249 167 EVILMDEPC 175 (251)
T ss_pred CEEEEeCCC
Confidence 999999885
No 268
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.94 E-value=8.4e-10 Score=115.87 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=80.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-----CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-----PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-----~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... .+++
T Consensus 277 ~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDI-SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred Ccccce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 367777 77778888776 99999999999999999999999986532211 1222221 1222
Q ss_pred -CeeeeEeeccc------------ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 355 -TTLGIVRVEGV------------LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 355 -tT~~~i~~~~~------------l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
|..+.+.+... ... ...+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 22222221100 000 12455666774 35788899999999999999999 589999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 436 Pt 437 (510)
T PRK09700 436 PT 437 (510)
T ss_pred CC
Confidence 85
No 269
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=2.8e-09 Score=112.48 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=81.2
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-ccccccccc--CCCCCe-eeeE
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEA--PVPGTT-LGIV 360 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s--~~pgtT-~~~i 360 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++++|.+.... ..+..+... .++..| .+.+
T Consensus 7 ls~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l 85 (530)
T PRK15064 7 ITMQFGAKPLFENI-SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTV 85 (530)
T ss_pred EEEEeCCcEeEeCC-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHH
Confidence 33455555688888 78888888766 999999999999999999999999754321 112221111 111111 1111
Q ss_pred eecc----------------------------------------cc-cccccccccccccC--CCCCCCCCCHHHHHHHH
Q 015085 361 RVEG----------------------------------------VL-PAQAKLFDTPGLLH--PNQITTRLTREEQKLVN 397 (413)
Q Consensus 361 ~~~~----------------------------------------~l-~~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~ 397 (413)
.+.. .. .....+++..|+.. .++....||+||+||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~ 165 (530)
T PRK15064 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVL 165 (530)
T ss_pred HHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHH
Confidence 1000 00 00113455556642 24567899999999999
Q ss_pred Hhhhh--cCCccccCCCC
Q 015085 398 INKEL--KPRTYRIKVSL 413 (413)
Q Consensus 398 i~r~l--~~~~~~l~~~~ 413 (413)
++++| .|+.+.||+|+
T Consensus 166 lA~aL~~~p~lLlLDEPt 183 (530)
T PRK15064 166 LAQALFSNPDILLLDEPT 183 (530)
T ss_pred HHHHHhcCCCEEEEcCCC
Confidence 99999 57889999885
No 270
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.94 E-value=9.8e-10 Score=103.78 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=73.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+...... +..+... .++.|..+
T Consensus 17 ~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 17 PILKGL-SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred cceece-EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 467777 77777888777 99999999999999999999999975432211 1111111 01222233
Q ss_pred eEeeccccc--cc-ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP--AQ-AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~--~~-~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... .. ....+.. |+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 322210000 00 0001111 222 12355688999999999999999 58899999885
No 271
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=2.1e-09 Score=104.06 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=76.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc---CCC-CCee
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA---PVP-GTTL 357 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s---~~p-gtT~ 357 (413)
+++.+ ++...+|+++. +|+||+|||||+++|+|.+++.+|.+......+ ..+... .++ .+..
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 22 QLNGV-SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 77777 77777888777 999999999999999999999999754322111 111111 112 1222
Q ss_pred eeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... ...+++..|+. ..++.+..||+||+|++.++++| .|+.+.+|+|+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST 168 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 22221100 000 01234444553 34567889999999999999999 68888888874
No 272
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=1.5e-09 Score=107.53 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=77.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~----~p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+ ..+...+ .|
T Consensus 29 ~~l~~v-sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 29 KALDGV-SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 567777 77778888777 999999999999999999999988754322211 1111111 12
Q ss_pred CCeee-eEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLG-IVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~-~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|+. .+.... ... ....+++..|+. ..++....|||||+||++++++| .|+.+.+|+|.
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPt 182 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPV 182 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 12211 110000 000 012456666664 24688999999999999999999 68888888874
No 273
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.94 E-value=7.6e-10 Score=119.07 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=84.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccCC----CC-
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPV----PG- 354 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~~----pg- 354 (413)
.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|...|++|.+.... ..+.++..... +.
T Consensus 314 ~~~~l~~~y~~~~il~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSI-KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEEeeEEEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 334455667666788888 77778887766 999999999999999999999999765321 11222222110 11
Q ss_pred CeeeeEeecc-cc--ccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEG-VL--PAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~-~l--~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.... .. .....+++..|+. ..++.+..|||||+||+++++++ .|+.+.||+|.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111110000 00 0012345555663 24678899999999999999999 68999999884
No 274
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=2.5e-09 Score=101.02 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=76.0
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCC-CeeeeE
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPG-TTLGIV 360 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pg-tT~~~i 360 (413)
+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|++...... +..+... .++. +..+.+
T Consensus 14 ~l~~i-s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNV-SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 57777 77777787766 99999999999999999999999975422211 1111111 1222 222222
Q ss_pred eeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+..... ....+++..|+. ..++....||+||+||+++++++ .|+.+.+|+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 2110000 002345555664 24677889999999999999999 67888888874
No 275
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=3e-09 Score=101.42 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++. + ++|.+......
T Consensus 6 ~~~nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDV-SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEEeCCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 334444556555678888 77778888777 99999999999999999985 3 46754322111
Q ss_pred --ccccccc--CCCCCe-eeeEeeccc----ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 --VSHLTEA--PVPGTT-LGIVRVEGV----LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT-~~~i~~~~~----l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++..| .+.+.+... ... ...+++..|+. ..++....||+||+||+++++++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 1111111 122222 222221100 000 11334455552 13466889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 165 ~~p~llllDEP~ 176 (252)
T PRK14256 165 VKPEVILMDEPA 176 (252)
T ss_pred cCCCEEEEcCCc
Confidence 68889998885
No 276
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.93 E-value=7.7e-10 Score=106.15 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=79.4
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC---CCCcccccc-----------------c
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGDGEEKNI-----------------V 344 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~---G~~~~~~~~-----------------v 344 (413)
....++...+++.+ ++...+|++++ +|+||+|||||+++|+|...|.. |.+...... +
T Consensus 10 l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i 88 (262)
T PRK09984 10 LAKTFNQHQALHAV-DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88 (262)
T ss_pred EEEEeCCeEEEecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhhe
Confidence 33445555678888 77777888777 99999999999999999998764 543322111 1
Q ss_pred cccccc--CCCCCe-eeeEeeccc------------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEGV------------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~~------------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
..+... .+++.| .+.+.+... .. ....+++..|+. ..++....||+||+||+++++++
T Consensus 89 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 168 (262)
T PRK09984 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM 168 (262)
T ss_pred EEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh
Confidence 111111 123222 222211000 00 012244445654 34677889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 169 ~~p~llllDEPt 180 (262)
T PRK09984 169 QQAKVILADEPI 180 (262)
T ss_pred cCCCEEEecCcc
Confidence 78899999884
No 277
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.2e-09 Score=103.97 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=81.6
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~------------ 343 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..| .+|.+......
T Consensus 23 ~i~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQV-SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EEeeEEEEECCEEEeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 344455566666778888 77777888776 999999999999999999875 56764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccc----cc-c-----ccccccccccC-----CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVL----PA-Q-----AKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l----~~-~-----~~liDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+.... .. . ..+++..|+.. .++....||+||+||+.++++| .
T Consensus 102 ~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred heEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 1233333332211000 00 0 12233344431 2466788999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 182 p~lllLDEPt 191 (276)
T PRK14271 182 PEVLLLDEPT 191 (276)
T ss_pred CCEEEEcCCc
Confidence 8899999885
No 278
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.93 E-value=7e-10 Score=106.88 Aligned_cols=120 Identities=19% Similarity=0.280 Sum_probs=78.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC---C-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP---V- 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~---~- 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+.... +
T Consensus 25 ~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNV-SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 4577777 77777888777 999999999999999999999999754322211 1111110 1
Q ss_pred CCCe-eeeEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt 179 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111 11111000 000 112355555663 24677889999999999999999 78899999885
No 279
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.93 E-value=6.6e-10 Score=107.46 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=80.4
Q ss_pred EEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....| +...+++.+ ++...+|++++ +|+||+|||||+++|+|++. .+|.+...... +.
T Consensus 3 i~~~nls~~~~~~~~~~l~~i-sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 3344444555 444578888 78888888766 99999999999999999997 67865432211 11
Q ss_pred ccccc--CCCCCeeeeEeeccccc--cccccccccccc-CCCCCCC-----------CCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLP--AQAKLFDTPGLL-HPNQITT-----------RLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~--~~~~liDtpGl~-~~~~~~~-----------~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... -+++|.++.+....... .....++..|+. ..++... .||+|++|++.++|+| .|+.+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 12444444442111011 011233444543 1223333 4999999999999999 78888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 161 llDEpt 166 (275)
T cd03289 161 LLDEPS 166 (275)
T ss_pred EEECcc
Confidence 888874
No 280
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.93 E-value=5.2e-10 Score=107.58 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=73.1
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc--cccCCCCCe-eeeEeecc---ccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL--TEAPVPGTT-LGIVRVEG---VLP 367 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~--t~s~~pgtT-~~~i~~~~---~l~ 367 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+..... +... .....+..| .+.+.... ...
T Consensus 39 il~~i-s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 39 ALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-VSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-EeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 45555 66667787766 9999999999999999999999997543221 1000 000111112 22221100 000
Q ss_pred -cc-----cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 -AQ-----AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 -~~-----~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ..+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt 171 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 00 1234445554 23567889999999999999999 58999999885
No 281
>PRK13409 putative ATPase RIL; Provisional
Probab=98.92 E-value=7.3e-10 Score=117.90 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=75.6
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCC-CeeeeEeecc-ccc---
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPG-TTLGIVRVEG-VLP--- 367 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pg-tT~~~i~~~~-~l~--- 367 (413)
++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+... ..+..+... ..+. |..+.+.... ...
T Consensus 355 l~~~-s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 355 LEVE-GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEec-ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 4444 55667788776 99999999999999999999999975432 111111111 1122 2222222100 000
Q ss_pred cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 012345556664 34788999999999999999999 78899999884
No 282
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.5e-09 Score=101.84 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=76.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v-------------- 344 (413)
+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+. +|.+......+
T Consensus 9 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 87 (252)
T PRK14272 9 DVNIYYGDKQAVKNV-NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV 87 (252)
T ss_pred eeEEEECCEEeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence 334455545678888 77778888776 9999999999999999998764 57543222111
Q ss_pred cccccc--CCCC-CeeeeEeeccccc---cc-------ccccccccc----c-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPG-TTLGIVRVEGVLP---AQ-------AKLFDTPGL----L-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pg-tT~~~i~~~~~l~---~~-------~~liDtpGl----~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .+++ +..+.+....... .. ..++...++ . ..++....||+||+||+++++++ .|
T Consensus 88 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14272 88 GMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP 167 (252)
T ss_pred EEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 111111 1122 2122221100000 00 001111221 1 23566889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 168 ~llllDEP~ 176 (252)
T PRK14272 168 EILLMDEPT 176 (252)
T ss_pred CEEEEeCCC
Confidence 889999885
No 283
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=1.2e-09 Score=104.71 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=82.1
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------------ccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------------NIV 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------------~~v 344 (413)
-+..+.+|...+++.+ ++...+|++++ +|+||+|||||+++|+|...+.+|.+.... ..+
T Consensus 14 ~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i 92 (257)
T PRK14246 14 SRLYLYINDKAILKDI-TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV 92 (257)
T ss_pred eeEEEecCCceeEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence 3444556666788888 77777887766 999999999999999999999887532110 011
Q ss_pred cccccc--CCCCCe-eeeEeecc----cccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEG----VLPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~----~l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .+++.| .+.+.+.. .... ...+++..|+. ..++....||+||+||+++++++ .|
T Consensus 93 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 93 GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred EEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111111 123423 23222110 0000 01344555653 23567789999999999999999 67
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 173 ~llllDEPt 181 (257)
T PRK14246 173 KVLLMDEPT 181 (257)
T ss_pred CEEEEcCCC
Confidence 888888875
No 284
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.92 E-value=8.3e-10 Score=105.20 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=79.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc--------------cccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI--------------VSHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~--------------v~~~ 347 (413)
..|+...+++.+ ++...+|++++ +|+||+|||||+++|+|... +.+|++...... +..+
T Consensus 13 ~~~~~~~~l~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 91 (251)
T PRK14244 13 LWYGSKQILFDI-NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91 (251)
T ss_pred EEECCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEE
Confidence 344445677777 77778888776 99999999999999999975 357864422111 1111
Q ss_pred ccc--CCCCCeeeeEeecccccc-----------cccccccccccC-----CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 348 TEA--PVPGTTLGIVRVEGVLPA-----------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l~~-----------~~~liDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
... .++++..+.+.+.....+ ...+++..|+.. .++....||+||+|++++++++ .|+.+
T Consensus 92 ~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111 123333333221100000 013455556632 2456788999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 172 llDEPt 177 (251)
T PRK14244 172 LMDEPC 177 (251)
T ss_pred EEeCCC
Confidence 998874
No 285
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.3e-09 Score=104.40 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=81.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~----------- 343 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|... + .+|.+......
T Consensus 13 l~i~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNI-NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EEEeeEEEEECCeeeEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 3344555566655678887 77778888776 99999999999999999986 3 46764322111
Q ss_pred ---ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++++..+.+.+.... .. ...++...|+. ..++....||+||+||+.+++++
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 1111111 1223333332211000 00 01123334442 23567889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 172 ~~p~llllDEPt 183 (259)
T PRK14274 172 TNPDVLLMDEPT 183 (259)
T ss_pred cCCCEEEEcCCc
Confidence 68899999885
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.91 E-value=1.1e-09 Score=105.75 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 28 ~~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~ 106 (272)
T PRK14236 28 VRNLNLFYGDKQALFDI-SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR 106 (272)
T ss_pred EEEEEEEECCeeEeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence 33444455545677777 77778888777 999999999999999999873 678643221111
Q ss_pred --cccccc--CCCCCeeeeEeeccccc---c-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVLP---A-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l~---~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .+++|..+.+.+..... . ...+++..|+. ..++....||+||+||+++++++ .
T Consensus 107 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 186 (272)
T PRK14236 107 RVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIE 186 (272)
T ss_pred cEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCC
Confidence 111111 12332222222110000 0 01233444542 23567789999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 187 p~lllLDEPt 196 (272)
T PRK14236 187 PEVLLLDEPT 196 (272)
T ss_pred CCEEEEeCCc
Confidence 8889999885
No 287
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.91 E-value=1.2e-09 Score=118.79 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=84.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+.+..-.|+ ...+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+... +
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDV-SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 355556666663 24578888 77777777655 99999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc--cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~--~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ ++||-++.+........ .....+..|+ .. -...-..|||||+||+++||++ +|+.
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222222 35665555543211110 0112222222 10 0122356999999999999999 7788
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 610 LiLDEpT 616 (686)
T TIGR03797 610 LLFDEAT 616 (686)
T ss_pred EEEeCCc
Confidence 8888873
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.90 E-value=2e-09 Score=115.54 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=80.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~----~p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+...+ .+
T Consensus 338 ~~l~~v-s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 338 HAVEKV-SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEEeee-EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 477777 78778888776 99999999999999999999999986532211 12222221 22
Q ss_pred CCee-eeEeecc---cc-c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVEG---VL-P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~~---~l-~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|. +.+.... .. . ....+++..|+. ..++.+..|||||+||++++++| .|+.+.+|+|.
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPt 491 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2221 2211100 00 0 012456667874 35788999999999999999999 68899999884
No 289
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9.9e-10 Score=104.55 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~------------- 343 (413)
+.+....++...+++.+ ++....|++++ +|+||+|||||+++|+|...+ ++|.+......
T Consensus 6 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14240 6 VKDLDLFYGDFQALKKI-NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK 84 (250)
T ss_pred EEEEEEEECCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc
Confidence 33444455545677777 77778888776 999999999999999998753 56764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+.....+ ...+++..|+. ..++....||+||+||+.+++++ .
T Consensus 85 ~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14240 85 RVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVE 164 (250)
T ss_pred cEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcC
Confidence 1111111 112222222221100000 01122333331 12567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 165 p~llllDEP~ 174 (250)
T PRK14240 165 PEVLLMDEPT 174 (250)
T ss_pred CCEEEEeCCC
Confidence 8899999885
No 290
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=3.4e-09 Score=100.98 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=79.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 7 ~~~l~~~~~~~~~l~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14251 7 AKDVHLSYGNYEALHGI-SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRK 85 (251)
T ss_pred EEeeEEEECCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhc
Confidence 33444455555677777 77778888776 99999999999999999986 3677643221111
Q ss_pred --cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+|++++++++ .
T Consensus 86 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~ 165 (251)
T PRK14251 86 EVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVR 165 (251)
T ss_pred cEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcC
Confidence 111111 1122222222211000 00 01234444552 23567789999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 166 p~llllDEP~ 175 (251)
T PRK14251 166 PKVVLLDEPT 175 (251)
T ss_pred CCEEEecCCC
Confidence 8889898875
No 291
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=4.1e-09 Score=101.49 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=81.1
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+-+....++...+++.+ ++....|++++ +|+||+|||||+++|+|++. +++|.+......
T Consensus 22 ~~~nl~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGI-DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EEeeEEEEECCeeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 334445555556678877 77778888776 99999999999999999986 467864322111
Q ss_pred --ccccccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++++..+.+.+.....+ ...+++..|+. ..++....||+||+|+++++|++
T Consensus 101 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 101 KHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred cceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1111111 122333333322100000 01123334442 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 181 ~p~lllLDEPt 191 (267)
T PRK14237 181 KPDILLMDEPA 191 (267)
T ss_pred CCCEEEEeCCc
Confidence 68889998875
No 292
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.2e-09 Score=104.09 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=77.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc--------------c
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI--------------V 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~--------------v 344 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ .+|.+...... +
T Consensus 8 ~l~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14262 8 NFSAYYGEKKAVKNV-TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV 86 (250)
T ss_pred eeEEEeCCceeEeee-eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence 334445545677777 77778888776 999999999999999999873 67764422211 1
Q ss_pred cccccc--CCCCCeeeeEeecccc---c-c------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL---P-A------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l---~-~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++.+..+.+.+.... . . ...+++..|+. ..++....||+||+||+.+++++ .|+
T Consensus 87 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ 166 (250)
T PRK14262 87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166 (250)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC
Confidence 111111 1122222222211000 0 0 01123334442 13567889999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 167 llllDEP~ 174 (250)
T PRK14262 167 VILLDEPT 174 (250)
T ss_pred EEEEeCCc
Confidence 88888874
No 293
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=9.5e-10 Score=113.20 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=79.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc------------cccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL------------TEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~------------t~s~ 351 (413)
|.....|. .++..+ ++...+|+..+ ||+||+|||||++.|+|..+++.|++..++.....+ ...+
T Consensus 327 ~~~y~~g~-~~l~~l-~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 327 SFRYPDGK-PALSDL-NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred EEecCCCC-cccCCc-eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 33333343 677777 67777776555 999999999999999999999999876443333322 2222
Q ss_pred --CCCCeeeeEeeccccc--c-c---------ccccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 352 --VPGTTLGIVRVEGVLP--A-Q---------AKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 352 --~pgtT~~~i~~~~~l~--~-~---------~~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
++||-++++.+-.... . . ..+++.| |+.. -..--..||+||.||+++||++ .+..|.+|+|
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 3566666654421100 0 0 1223322 3321 1122345999999999999999 4568888887
No 294
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.3e-09 Score=114.13 Aligned_cols=119 Identities=12% Similarity=0.191 Sum_probs=80.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc-----CCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA-----PVP- 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s-----~~p- 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++
T Consensus 267 ~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPI-SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred Ccccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 467777 77778888766 999999999999999999999999865332111 111111 122
Q ss_pred CCeeeeEeeccc---------cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGV---------LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~---------l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt 424 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT 424 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence 222233221100 00 012355566773 35788999999999999999999 68999999985
No 295
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.89 E-value=1.2e-09 Score=116.68 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=76.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------ccccccccC--CCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVSHLTEAP--VPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~~~t~s~--~pgtT~ 357 (413)
..+++.+ ++..++|+.+. +|++|+|||||++.|+|++ |.+|.+.-+.. .+..+.+.+ +.||-+
T Consensus 363 ~~vL~~i-~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 363 KTLAGPL-NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred Ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 4577877 77777777666 9999999999999999999 88997653322 222333322 356666
Q ss_pred eeEeeccc-ccc-c-ccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LPA-Q-AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~~-~-~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++.+... ..+ . ....+.. |+.. -...-..|||||+||+++||++ +|+.+.||++.
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T 513 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 66554211 000 0 1111111 2221 1122356999999999999999 78889888873
No 296
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.89 E-value=1.2e-09 Score=113.02 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=77.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-cccccCCCC-CeeeeEeecc---ccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-HLTEAPVPG-TTLGIVRVEG---VLP 367 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-~~t~s~~pg-tT~~~i~~~~---~l~ 367 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+........ .......+. |..+.+.+.. ...
T Consensus 38 ~IL~nV-SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 38 YALNNI-SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred eEEeee-EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 467777 77778888776 9999999999999999999999997543221100 000011122 2222221100 000
Q ss_pred c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ...+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT 171 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 01245555664 34677899999999999999999 68899999885
No 297
>PLN03073 ABC transporter F family; Provisional
Probab=98.89 E-value=2.2e-09 Score=116.57 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=82.5
Q ss_pred EeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccCCCCCeeee
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPVPGTTLGI 359 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~~pgtT~~~ 359 (413)
+-.....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+.... ..+.++......+.+...
T Consensus 511 ~~~ls~~y~~~~~il~~v-sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~ 589 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589 (718)
T ss_pred EEeeEEEeCCCCeeEecc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcch
Confidence 3344556642 3477877 77777787665 999999999999999999999999765321 112222222112111100
Q ss_pred --Eeecc-ccc-----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 360 --VRVEG-VLP-----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 360 --i~~~~-~l~-----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.... ... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|.
T Consensus 590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT 655 (718)
T PLN03073 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655 (718)
T ss_pred hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00000 000 012345556664 24677899999999999999999 68889999884
No 298
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=3.2e-09 Score=101.02 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=77.1
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-------------cccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~-------------v~~~ 347 (413)
...++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+
T Consensus 10 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 10 DLFYGENQALKSI-NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred EEEECCeeeeecc-eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEE
Confidence 3444545577887 77778888877 999999999999999999875 46754322111 1111
Q ss_pred ccc--CCCCCeeeeEeecccc---ccc-------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVL---PAQ-------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l---~~~-------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.+..+.+.+.... ... ..+++..|+. ..++....||+||+||+.+++++ .|+.+.
T Consensus 89 ~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 89 FQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred ecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 111 1222333332211000 000 1123333432 23466789999999999999999 588999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 169 lDEP~ 173 (249)
T PRK14253 169 MDEPT 173 (249)
T ss_pred EeCCC
Confidence 99885
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.88 E-value=8.5e-10 Score=116.09 Aligned_cols=120 Identities=23% Similarity=0.318 Sum_probs=78.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-ccc------------------ccccccc--
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNI------------------VSHLTEA-- 350 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~------------------v~~~t~s-- 350 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+... ... +..+...
T Consensus 297 ~~il~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNV-SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 3577777 77778888766 99999999999999999999999976532 110 1111111
Q ss_pred CCCC-CeeeeEeeccc--ccc------cccccccccccC------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGV--LPA------QAKLFDTPGLLH------PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~--l~~------~~~liDtpGl~~------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+..... ... ...+++..|+.. .++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11222211000 000 113456667742 3678899999999999999999 68889999885
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=1.5e-09 Score=113.95 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=80.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-CCCCCCcccccc-------------ccccccc-----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNI-------------VSHLTEA-----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~-------------v~~~t~s-----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+ +++|.+...... +..+... .+
T Consensus 275 ~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDV-SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccce-eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3577777 78888888776 99999999999999999998 488875532211 1122221 11
Q ss_pred CCCe-eeeEeecc--cc------c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG--VL------P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~--~l------~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+.. .+ . ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 2222 22222110 00 0 012456666774 35788899999999999999999 68999999985
No 301
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.88 E-value=1.3e-09 Score=102.25 Aligned_cols=121 Identities=23% Similarity=0.357 Sum_probs=76.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCccccc---------cccccccc--CCCC-C
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKN---------IVSHLTEA--PVPG-T 355 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~---------~v~~~t~s--~~pg-t 355 (413)
...+++.+ ++....|++++ +|+||+|||||+++|+|.++ +.+|.+..... .+..+... .+++ |
T Consensus 19 ~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 19 YARILNDV-SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred ccccccCc-eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 34577777 77777888776 99999999999999999998 88886432211 11111111 1233 2
Q ss_pred eeeeEeeccc--c----c------cccc-cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--L----P------AQAK-LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--l----~------~~~~-liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... . . .... +++..|+. ..++....||+||+||+++++++ .|+.+.+|+|+
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~ 171 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT 171 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 2222221000 0 0 0011 44444543 23567889999999999999999 57889998874
No 302
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.8e-09 Score=102.81 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc---CcC--CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS---VDA--GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~---~~~--~~G~~~~~~~~------------- 343 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+ .++ .+|.+......
T Consensus 6 ~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14245 6 ARDVNFWYGDFHALKGI-SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK 84 (250)
T ss_pred EEEEEEEECCEeEEeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence 34444556555677777 77777888776 999999999999999986 343 36764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .+++|..+.+.+.... .. ...+++..|+. ..++....||+||+||+++++++ .
T Consensus 85 ~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14245 85 NVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVS 164 (250)
T ss_pred heEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 1122222222211000 00 01334445552 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 165 p~lllLDEPt 174 (250)
T PRK14245 165 PSVLLMDEPA 174 (250)
T ss_pred CCEEEEeCCC
Confidence 8899999885
No 303
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.3e-09 Score=104.87 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=81.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~----------- 343 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|.+......
T Consensus 17 l~~~~l~~~~~~~~vl~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNI-NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEEEEECCeeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 4455566666655688888 77778888777 999999999999999999874 56754321111
Q ss_pred -----ccccccc--CCCCCeeeeEeeccccc----------cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -----VSHLTEA--PVPGTTLGIVRVEGVLP----------AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -----v~~~t~s--~~pgtT~~~i~~~~~l~----------~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+... .++++..+.+.+..... ....+++..|+. ..++....||+||+||+.++|+
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 1111111 12232222222110000 001233334432 2346678999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
+ .|+.+.||+|+
T Consensus 176 l~~~p~llllDEPt 189 (265)
T PRK14252 176 LATDPEILLFDEPT 189 (265)
T ss_pred HHcCCCEEEEeCCC
Confidence 9 68999999885
No 304
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.88 E-value=1.3e-09 Score=118.95 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=83.3
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------cccc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIVS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v~ 345 (413)
+.+.+..-.|+. ..+++.+ ++..++|+.+. +|++|+|||||+++|+|++.|.+|.+..++ ..+.
T Consensus 478 I~~~~vsf~y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENF-SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEEEEecCCCCCCcccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 445555555543 4578888 77777776555 999999999999999999999999865332 2223
Q ss_pred cccccC--CCCCeeeeEeeccc-ccc-c-c---------cccc-cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV-LPA-Q-A---------KLFD-TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~-l~~-~-~---------~liD-tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+.+ +.||-++.+..... ... . . .+++ .| |+.. -...-..|||||+||+++||++ +|+.
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 333222 35666666543110 000 0 0 1111 12 2221 1122356999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 637 liLDEpt 643 (710)
T TIGR03796 637 LILDEAT 643 (710)
T ss_pred EEEECcc
Confidence 9998874
No 305
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.88 E-value=4.1e-09 Score=100.88 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------c
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~ 345 (413)
+.+-.....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+......+ .
T Consensus 20 i~~~~l~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~ 98 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence 444444555553 3578888 78778888776 999999999999999999999999754322111 1
Q ss_pred ccccc--CCCCCeeeeEeecccccc--cccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... .+++|..+.+........ ....++.. |+. ..+.....||+||+|++++++++ .|+.+
T Consensus 99 ~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 99 IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 122322222211000000 00111111 222 12234578999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 179 llDEPt 184 (257)
T cd03288 179 IMDEAT 184 (257)
T ss_pred EEeCCc
Confidence 888874
No 306
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=5.8e-09 Score=99.36 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=78.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~------------- 343 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+.. | .+|.+......
T Consensus 8 ~~~l~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 86 (252)
T PRK14239 8 VSDLSVYYNKKKALNSV-SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK 86 (252)
T ss_pred EEeeEEEECCeeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh
Confidence 34444555555677777 77777888766 99999999999999999853 5 36764422211
Q ss_pred -ccccccc--CCCCCeeeeEeeccc---cc-cc------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGV---LP-AQ------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~---l~-~~------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+... .. .. ..+++..|+. ..++....||+||+||+.+++++ .
T Consensus 87 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (252)
T PRK14239 87 EIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATS 166 (252)
T ss_pred cEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 112233333221100 00 00 1123334431 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 167 p~llllDEPt 176 (252)
T PRK14239 167 PKIILLDEPT 176 (252)
T ss_pred CCEEEEcCCc
Confidence 8999999885
No 307
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.87 E-value=3.3e-09 Score=111.89 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=77.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc----------------ccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI----------------VSHLTEA 350 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~----------------v~~~t~s 350 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.+++ ++|.+...... +..+.+.
T Consensus 22 ~~~l~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDV-SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeece-EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 3578888 77778888776 999999999999999999986 57865322111 1111111
Q ss_pred C----CCCCeee-eEeecc----cccc------cccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 351 P----VPGTTLG-IVRVEG----VLPA------QAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 351 ~----~pgtT~~-~i~~~~----~l~~------~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
. .+..|.. .+.... .... ...+++..|+.. .++.+..||+||+||+++|++| .|+.+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1111211 010000 0000 123455567642 3678899999999999999999 6899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 181 DEPt 184 (529)
T PRK15134 181 DEPT 184 (529)
T ss_pred cCCC
Confidence 9985
No 308
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.87 E-value=2.1e-09 Score=103.28 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+.. +++|.+......+
T Consensus 13 i~~v~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 91 (264)
T PRK14243 13 TENLNVYYGSFLAVKNV-WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR 91 (264)
T ss_pred EeeeEEEECCEEEeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence 34445556655678887 77777888776 99999999999999999875 3567644222111
Q ss_pred --cccccc--CCCCCeeeeEeeccccc---c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVLP---A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l~---~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++.+..+.+.+..... . ...+++..|+. ..++....||+||+||+.++|++ .|+
T Consensus 92 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 171 (264)
T PRK14243 92 RIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE 171 (264)
T ss_pred hEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 111111 11222222221110000 0 01123333431 23567788999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 172 lllLDEPt 179 (264)
T PRK14243 172 VILMDEPC 179 (264)
T ss_pred EEEEeCCC
Confidence 99999884
No 309
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=4.6e-09 Score=101.55 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=78.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v----------- 344 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 22 ~~~nl~~~~~~~~~l~~v-s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 22 EVEGVKVFYGGFLALVDV-HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EEeeEEEEeCCeEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 334455566655678887 77778888776 999999999999999999753 467543221111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---ccc-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LPA-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.+..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|
T Consensus 101 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p 180 (274)
T PRK14265 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP 180 (274)
T ss_pred hcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 111111 112222222211000 000 01122233331 23567788999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 181 ~lllLDEPt 189 (274)
T PRK14265 181 DVLLMDEPC 189 (274)
T ss_pred CEEEEeCCc
Confidence 999999885
No 310
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.87 E-value=1.5e-09 Score=105.32 Aligned_cols=119 Identities=14% Similarity=0.235 Sum_probs=73.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+.... .+.++.... .+++..+.+.+......
T Consensus 50 ~~vL~~v-s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-~i~yv~q~~~l~~~tv~enl~~~~~~~~~ 127 (282)
T cd03291 50 APVLKNI-NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-RISFSSQFSWIMPGTIKENIIFGVSYDEY 127 (282)
T ss_pred ccceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEEEEeCcccccccCHHHHhhcccccCHH
Confidence 3477777 77777888776 999999999999999999999999754322 122222211 12333333322100000
Q ss_pred -ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..++. ...+....||+||+||++++++| .|+.+.+|+|+
T Consensus 128 ~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 128 RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 01111111211 01123468999999999999999 68889999885
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.87 E-value=2.2e-09 Score=112.47 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=79.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-CCCCCcccccc-------------ccccccc-----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNI-------------VSHLTEA-----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-~~G~~~~~~~~-------------v~~~t~s-----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..+| .+|.+...... +..+... -+
T Consensus 273 ~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDV-SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccc-eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3577777 77778888776 999999999999999999985 78876432211 1111111 12
Q ss_pred CC-CeeeeEeec----c----cccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVE----G----VLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~----~----~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+. . .... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 22 222222211 0 0010 12355666774 25788899999999999999999 68999999985
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=2.4e-09 Score=93.46 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------------cccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------------VSHL 347 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------------v~~~ 347 (413)
...||..+.+-+| .+..+.|+..+ +||+|+||||||+.|.-+.-|.+|......+. +..+
T Consensus 9 n~~yg~~q~lfdi-~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmv 87 (242)
T COG4161 9 NCFYGAHQALFDI-TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87 (242)
T ss_pred ccccccchheeee-eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhh
Confidence 3456777777777 56556666555 99999999999999998888888863321111 1111
Q ss_pred cc--cCCCCCee-e-eEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TE--APVPGTTL-G-IVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~--s~~pgtT~-~-~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.. .-||..|. + .+.-+.. +. ...+++.+-.+. ..++.+-.||||++|||+|+|+| +|.+...++
T Consensus 88 fqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde 167 (242)
T COG4161 88 FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred hhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC
Confidence 11 12343332 1 1111000 00 012344444443 46788899999999999999999 567777666
Q ss_pred C
Q 015085 412 S 412 (413)
Q Consensus 412 ~ 412 (413)
|
T Consensus 168 p 168 (242)
T COG4161 168 P 168 (242)
T ss_pred c
Confidence 5
No 313
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.87 E-value=1.1e-09 Score=102.56 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=69.1
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------ccccccccC-C----CCCeeeeEeecc-----c-
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEAP-V----PGTTLGIVRVEG-----V- 365 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s~-~----pgtT~~~i~~~~-----~- 365 (413)
..|++++ +|+||+|||||+++|+|..++++|.+..... .+..+.... + +.+..+.+.... .
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 4566665 9999999999999999999999997553321 122222211 0 111112111100 0
Q ss_pred -cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 -LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 -l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~ 141 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF 141 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 012345556664 34567889999999999999999 67888888874
No 314
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.87 E-value=6.2e-10 Score=103.13 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=90.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------ccccc--cC
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------SHLTE--AP 351 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------~~~t~--s~ 351 (413)
+-+..+.+|-..+++.| ++..+.|+++. +|+||+||||+|++|+|++.+++|.+......+ .+++. .-
T Consensus 5 ie~vtK~Fg~k~av~~i-sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGL 83 (300)
T COG4152 5 IEGVTKSFGDKKAVDNI-SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGL 83 (300)
T ss_pred EecchhccCceeeecce-eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhcc
Confidence 34566788888899999 88888999988 999999999999999999999999876544332 22221 12
Q ss_pred CCCCe-eeeEeeccccccc---------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVLPAQ---------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l~~~---------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|.+| .+.+.+...+.+- ..++.-.++. ...+....||-|.+|++.+-.++ .|+...||+||
T Consensus 84 y~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 84 YPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 23333 2334333332211 1233333443 34577899999999999776666 78889999987
No 315
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.86 E-value=3e-09 Score=112.13 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=83.4
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+-+....|+. ..+++.+ ++..++|+.++ +|++|+|||||+|+|+|+++|.+|.+..+... +
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i-~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPV-SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 3555555556643 2478888 77777777666 99999999999999999999999986533222 2
Q ss_pred cccccc--CCCCCeeeeEeeccc-ccc-c-cccccccc-----------cc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGV-LPA-Q-AKLFDTPG-----------LL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~-l~~-~-~~liDtpG-----------l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+. -++||.++.+.+... ..+ . ...++..| +. .-......|||||+||+.++|++ +|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 222222 235565665543211 110 0 11111122 21 01123467999999999999999 778
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.+|+|
T Consensus 479 ililDE~ 485 (529)
T TIGR02857 479 LLLLDEP 485 (529)
T ss_pred EEEEeCc
Confidence 8888887
No 316
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=2.5e-09 Score=102.65 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=79.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~----------- 343 (413)
+.+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++. .|.+......
T Consensus 8 l~~~nl~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGV-SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EEEeeEEEEeCCeeEeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 3444455566555677887 78888888777 9999999999999999999874 4532211111
Q ss_pred ---cccccc--cCCCCCeeeeEeeccc---c-cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTE--APVPGTTLGIVRVEGV---L-PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~--s~~pgtT~~~i~~~~~---l-~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+.. ..++.+..+.+.+... . .. ...+++..|+. ..++....||+||+||+++++++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 87 RRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 101110 0112222222211000 0 00 01233344442 13567789999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 167 ~~p~vllLDEP~ 178 (261)
T PRK14258 167 VKPKVLLMDEPC 178 (261)
T ss_pred cCCCEEEEeCCC
Confidence 68889999885
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.86 E-value=4.1e-09 Score=95.18 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=67.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++...+|++++ +|+||+|||||||+|++ .+|.+... ...+. .....+.+ .. +..+
T Consensus 9 ~~l~~i-sl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~----~~~~~-----~~~~~~~~---~~-q~~~ 70 (176)
T cd03238 9 HNLQNL-DVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLI----SFLPK-----FSRNKLIF---ID-QLQF 70 (176)
T ss_pred eeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEEC----Ccccc-----cccccEEE---Eh-HHHH
Confidence 345566 66677787766 99999999999999974 34643211 01000 00111111 11 1446
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhh--c--CCccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL--K--PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~--~~~~~l~~~~ 413 (413)
++..|+.. .++....||+|++||+.+++++ . |+.+.+|+|+
T Consensus 71 l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred HHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 66677652 4677899999999999999999 6 7888888874
No 318
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.8e-09 Score=106.00 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=79.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV---------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v---------- 344 (413)
+.+-+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 46 l~i~nl~~~~~~~~iL~~i-s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGV-SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 3344445556555677777 77777888776 99999999999999999985 5678654222111
Q ss_pred ----cccccc--CCCCCeeeeEeecccc---------------c--c-----ccccccccccc-----CCCCCCCCCCHH
Q 015085 345 ----SHLTEA--PVPGTTLGIVRVEGVL---------------P--A-----QAKLFDTPGLL-----HPNQITTRLTRE 391 (413)
Q Consensus 345 ----~~~t~s--~~pgtT~~~i~~~~~l---------------~--~-----~~~liDtpGl~-----~~~~~~~~LS~g 391 (413)
.++... .++++..+.+.+.... . . ...+++..|+. ..++....||+|
T Consensus 125 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 111111 1122222222211000 0 0 01122233331 224667889999
Q ss_pred HHHHHHHhhhh--cCCccccCCCC
Q 015085 392 EQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 392 e~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+||+.++++| .|+.+.||+|+
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPt 228 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPA 228 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999 67889998874
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=6.3e-09 Score=91.93 Aligned_cols=93 Identities=26% Similarity=0.367 Sum_probs=60.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.++..+ ++...+|++++ +|+||+|||||+++|.|.+.+..|.+......+... .. . .....
T Consensus 13 ~~l~~~-~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~----------~~--~--~~~~~--- 74 (157)
T cd00267 13 TALDNV-SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL----------PL--E--ELRRR--- 74 (157)
T ss_pred eeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC----------CH--H--HHHhc---
Confidence 466666 66667777776 999999999999999999988877432111100000 00 0 00000
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++ ...||+||+|++.+++++ .++.+.+|+|+
T Consensus 75 ---i~~------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 75 ---IGY------VPQLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred ---eEE------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 011999999999999999 67888888874
No 320
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.86 E-value=1.9e-09 Score=114.90 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=81.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------ccc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~ 345 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|+++|.+|.+...+. .+.
T Consensus 342 i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNI-NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEEEecCCCCCccccCc-eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 444444444432 4578888 77777777655 9999999999999999999999998653322 222
Q ss_pred cccccC--CCCCeeeeEeeccc--ccc--ccccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV--LPA--QAKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~--l~~--~~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.. ++||-++.+.+... ..+ .....+..| +.. -...-..|||||+||+.+||++ +++
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 333322 35665555543100 000 011111222 210 0112356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|.
T Consensus 501 ililDEpt 508 (582)
T PRK11176 501 ILILDEAT 508 (582)
T ss_pred EEEEECcc
Confidence 88888873
No 321
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2.1e-09 Score=106.64 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=80.5
Q ss_pred EEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc---------
Q 015085 281 LHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI--------- 343 (413)
Q Consensus 281 V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~--------- 343 (413)
+.+-.....| +...+++.+ ++...+|++++ +|+||+|||||+++|+|... +.+|.+......
T Consensus 81 i~~~nls~~y~~~~~~~L~~i-s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDL-NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEEEeeEEEecCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 3344444455 334578888 78788888766 99999999999999999986 356764322111
Q ss_pred -----cccccccC--CCCCeeeeEeeccccc----cc------ccccccccc----c-CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -----VSHLTEAP--VPGTTLGIVRVEGVLP----AQ------AKLFDTPGL----L-HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -----v~~~t~s~--~pgtT~~~i~~~~~l~----~~------~~liDtpGl----~-~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+...+ +.+|.++.+.+..... .. ..+++..++ . ..+.....||+||+||+++||+
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 11121111 2344444433211000 00 111233333 1 2346678899999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
| .++.+.||+|+
T Consensus 240 l~~~p~IlLLDEPt 253 (329)
T PRK14257 240 IALEPEVLLMDEPT 253 (329)
T ss_pred HHhCCCEEEEeCCc
Confidence 9 78899999875
No 322
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.85 E-value=2.2e-09 Score=114.68 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=82.5
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------ccccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIVSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v~~ 346 (413)
|.+....-.|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+. ..+..
T Consensus 335 I~~~~vsf~y~~~~~iL~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDV-SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEEEeCCCCceecce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 444444455542 4578888 77777787666 999999999999999999999999754332 22223
Q ss_pred cccc--CCCCCeeeeEeeccc-c-ccc-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGV-L-PAQ-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~-l-~~~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+.+. -+.||-++.+.+... . +.. ...++..| +.. -...-..|||||+||+.+||++ .++.+
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2222 235555555543210 0 000 11122222 211 1122346999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 494 iLDEpt 499 (588)
T PRK13657 494 ILDEAT 499 (588)
T ss_pred EEeCCc
Confidence 888874
No 323
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2.2e-09 Score=102.84 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=79.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ .+|.+......+
T Consensus 10 ~~~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGI-SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR 88 (259)
T ss_pred EEEEEEEECCeEeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh
Confidence 33444455555677777 77778888776 999999999999999999874 367544222111
Q ss_pred --cccccc--CCCCCeeeeEeeccc----ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV----LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~----l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++|+| .
T Consensus 89 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 168 (259)
T PRK14260 89 QIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIK 168 (259)
T ss_pred heEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 111111 122233332221100 000 01233444542 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 169 p~lllLDEPt 178 (259)
T PRK14260 169 PKVLLMDEPC 178 (259)
T ss_pred CCEEEEcCCC
Confidence 8889998874
No 324
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.85 E-value=3.6e-09 Score=110.57 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=83.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-CCCCCcccccc-------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNI-------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-~~G~~~~~~~~-------------v~ 345 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|..++ .+|.+...... +.
T Consensus 261 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHNL-SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EEEeceEEEECCeeEEeec-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 3344455566655678888 78778888777 999999999999999998765 57764322111 11
Q ss_pred cccccC--CC--CCeeeeE-eecc-----c---cc-----ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 346 HLTEAP--VP--GTTLGIV-RVEG-----V---LP-----AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 346 ~~t~s~--~p--gtT~~~i-~~~~-----~---l~-----~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+.... .. .++...+ .... . .. ....+++..|+.. .++.+..||+||+||++++++| .
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 111110 01 1221111 0000 0 00 0123455667753 4677899999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 420 p~lllLDEPt 429 (490)
T PRK10938 420 PTLLILDEPL 429 (490)
T ss_pred CCEEEEcCcc
Confidence 8999999985
No 325
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.84 E-value=2.7e-09 Score=115.22 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=81.9
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-cccccccccc--CCCCC
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEA--PVPGT 355 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s--~~pgt 355 (413)
+.+......+. ...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++..|.+... +..+..+.+. -.++|
T Consensus 452 i~~~nv~~~~~~~~~il~~i-sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~t 530 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESL-SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGT 530 (659)
T ss_pred EEEEeeEEECCCCCeeeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcC
Confidence 33444444442 34578888 77778888766 99999999999999999999888865422 1222233222 22444
Q ss_pred eeeeEeeccc--------c-c-cccccccccccc----------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--------L-P-AQAKLFDTPGLL----------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--------l-~-~~~~liDtpGl~----------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+.+... . . ....+++..|+. ........||+||+||++++|++ .|+.+.||+|.
T Consensus 531 v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpt 610 (659)
T TIGR00954 531 LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610 (659)
T ss_pred HHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4454433210 0 0 001222233332 11122468999999999999999 78889999874
No 326
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.3e-09 Score=103.46 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=79.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v----------- 344 (413)
.+-+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|.+. +++|.+......+
T Consensus 26 ~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNI-NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EEeeeEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 334444455555677777 77777888776 99999999999999999986 5788654322111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---cccc-------ccccccc----ccc-CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LPAQ-------AKLFDTP----GLL-HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~~~-------~~liDtp----Gl~-~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... .++.+..+.+.+... .... ..+++.. ++. ..++....||+||+||+.++++|
T Consensus 105 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred hhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 111111 112222333221100 0000 0111122 221 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 185 ~p~lllLDEPt 195 (271)
T PRK14238 185 EPDVILMDEPT 195 (271)
T ss_pred CCCEEEEeCCC
Confidence 58999999885
No 327
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.84 E-value=1.7e-09 Score=118.03 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=82.6
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
|.+-...-.|+ ...+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+... +..
T Consensus 474 I~~~~vsf~y~~~~~iL~~i-sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDI-SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred EEEEEEEEEcCCCCcceece-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 55555555554 24577887 77777776555 99999999999999999999999986533222 222
Q ss_pred ccccC--CCCCeeeeEeecc--cccc-c-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 347 LTEAP--VPGTTLGIVRVEG--VLPA-Q-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 347 ~t~s~--~pgtT~~~i~~~~--~l~~-~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
+.+.+ +.||-++.+.+.. .... . ....+..| +.. -...-..|||||+||+++||++ +|+.
T Consensus 553 v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred EecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 22221 3555555554320 0110 0 11111122 211 1123466999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 633 liLDE~T 639 (708)
T TIGR01193 633 LILDEST 639 (708)
T ss_pred EEEeCcc
Confidence 9998873
No 328
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.84 E-value=4.6e-09 Score=111.65 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=86.1
Q ss_pred eEEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------
Q 015085 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------ 345 (413)
Q Consensus 280 ~V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------ 345 (413)
.|.+....-+|+ ...+++.+ ++..++|+.+. ||++|+|||||+|.|++++.+.+|.+..++..++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~i-s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDI-SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred eEEEEEEEEEcCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 467777777887 46788888 77777777665 9999999999999999999999998664322222
Q ss_pred cccccC--CCCCeeeeEeeccc-cc-cc-----------ccccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV-LP-AQ-----------AKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~-l~-~~-----------~~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+.. +.||..+.+.+.-. .. +. -.+...| |+.. -...-..|||||+||+++||++ .++.
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 222221 34555555443210 00 00 0122334 4432 1233457999999999999999 5667
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
+.||++
T Consensus 487 LILDEa 492 (567)
T COG1132 487 LILDEA 492 (567)
T ss_pred EEEecc
Confidence 888775
No 329
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.84 E-value=1.8e-09 Score=113.07 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccccC-----CCCC
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEAP-----VPGT 355 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s~-----~pgt 355 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.... ++..
T Consensus 267 ~l~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDV-SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred Ccccc-eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 46666 67777888776 99999999999999999999999976532211 22222221 1222
Q ss_pred e-eeeEeecc-----c----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEG-----V----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~-----~----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+.. . .. ....+++..|+. ..++....||+||+||+.+|+++ .|+.+.||+|+
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt 423 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 2 22221100 0 00 012455666773 35788999999999999999999 68999999985
No 330
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.8e-09 Score=102.36 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=77.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v--------------~~~ 347 (413)
..||...+++.+ ++....|++++ +|+||+|||||+++|+|++.| .+|.+......+ ..+
T Consensus 16 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 94 (261)
T PRK14263 16 IFYGNFMAVRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94 (261)
T ss_pred EEeCCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEE
Confidence 344555677777 77778888776 999999999999999999876 567543222111 111
Q ss_pred ccc--CCCCCeeeeEeecccc---c-----cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 348 TEA--PVPGTTLGIVRVEGVL---P-----AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l---~-----~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
... .+..+..+.+.+.... . ....+++..|+. ..++....||+||+||+.++|++ .|+.+.+|
T Consensus 95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 111 1122222322211000 0 012344555552 12345678999999999999999 67889999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 175 EPt 177 (261)
T PRK14263 175 EPC 177 (261)
T ss_pred CCC
Confidence 885
No 331
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=3.5e-09 Score=100.78 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=77.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc--------------c
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV--------------S 345 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v--------------~ 345 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +++|.+......+ .
T Consensus 9 v~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~ 87 (250)
T PRK14266 9 LNTYFDDAHILKNV-NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVG 87 (250)
T ss_pred EEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheE
Confidence 33445445577777 77777888776 99999999999999999864 3678644222111 1
Q ss_pred ccccc--CCCCCeeeeEeeccccc----cc------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLP----AQ------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~----~~------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... .++++..+.+.+..... .. ..+++..|+. ..++....||+||+|++.+++++ .|+.
T Consensus 88 ~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 167 (250)
T PRK14266 88 MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEV 167 (250)
T ss_pred EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 11111 12333333332211000 00 1122333431 12466789999999999999999 6888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.+|+|+
T Consensus 168 lllDEP~ 174 (250)
T PRK14266 168 ILMDEPC 174 (250)
T ss_pred EEEcCCC
Confidence 9999885
No 332
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.84 E-value=2.4e-09 Score=116.55 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=82.8
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
.|.+.+..-.|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+.. .+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i-~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNV-SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCCCCccceeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 3555555556643 3478888 77777777555 9999999999999999999999997653322 22
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.. +.||-++.+.+.-. ... ....++.. |+.. -...-..|||||+||+++||++ +|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2222221 34555555543211 000 01112222 2211 1122356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 622 iliLDE~T 629 (694)
T TIGR03375 622 ILLLDEPT 629 (694)
T ss_pred EEEEeCCC
Confidence 89988873
No 333
>COG1159 Era GTPase [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=96.97 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=84.4
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS 256 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~ 256 (413)
.|+..+.+.|.+.+.+++.++|+|++|||+.+..+..+..+.+.+... . .|+++++||+|.....
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~----------~-----~pvil~iNKID~~~~~ 130 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT----------K-----TPVILVVNKIDKVKPK 130 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc----------C-----CCeEEEEEccccCCcH
Confidence 378889999999999999999999999999997777777777776542 1 3899999999998653
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
. .+........... .+..++.+||++|.+++.|++.+...+.++
T Consensus 131 ~---~l~~~~~~~~~~~---~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 131 T---VLLKLIAFLKKLL---PFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred H---HHHHHHHHHHhhC---CcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 2 1223322222222 467899999999999999999998877664
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=98.83 E-value=2.9e-09 Score=124.33 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=88.2
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~--pg 354 (413)
|.+-++.-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|.+++.+|++...+..+..+.+.++ .|
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDI-NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 445555556643 3467777 77778887655 99999999999999999999999876554555556555543 56
Q ss_pred CeeeeEeeccccccc--cccccccccc-------C-----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQ--AKLFDTPGLL-------H-----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~--~~liDtpGl~-------~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|-++++.+....++. ..+++.-++. . -...-..|||||+||+++||++ .++.|.||+|+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 767766542111111 1122222221 0 0112346999999999999999 78999999885
No 335
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=3.5e-09 Score=101.04 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=77.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v-------------- 344 (413)
.....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 11 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 89 (253)
T PRK14261 11 NLNLWYGEKHALYDI-TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI 89 (253)
T ss_pred eeEEEECCeeeeeee-EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence 334455555678887 77778888776 999999999999999998652 367543221111
Q ss_pred cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++ .|+
T Consensus 90 ~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 169 (253)
T PRK14261 90 GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE 169 (253)
T ss_pred EEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 111111 1122222222211000 00 01122333331 13567888999999999999999 689
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 170 lllLDEP~ 177 (253)
T PRK14261 170 VILMDEPC 177 (253)
T ss_pred EEEEeCCc
Confidence 99999885
No 336
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.83 E-value=3e-09 Score=113.22 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=82.4
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------c
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~ 345 (413)
+.+-.....|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.++|.+|.+..+...+ .
T Consensus 339 i~~~~v~f~y~~~~~~il~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGL-SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEEEECCCCCCcceecc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 555555555643 3578888 77777777666 999999999999999999999999865332222 1
Q ss_pred ccccc--CCCCCeeeeEeeccc-cc--cccccccccccc----------C-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LP--AQAKLFDTPGLL----------H-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~--~~~~liDtpGl~----------~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+.+. -+.||-++.+.+... .. .....++..|+. . -......|||||+||+++||++ .|+.+
T Consensus 418 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 418 VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 22211 134555555443110 00 001122222321 1 1123456999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 498 ilDE~t 503 (574)
T PRK11160 498 LLDEPT 503 (574)
T ss_pred EEeCCc
Confidence 888873
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.83 E-value=5.1e-09 Score=100.20 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=70.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-----------ccccccccccc------------
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTE------------ 349 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-----------~~~~~v~~~t~------------ 349 (413)
.+++.+ +. ..+|+++. +|+||+|||||+++|+|+++|++|.+. .....+.....
T Consensus 15 ~~l~~i-~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRL-PV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcC-CC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 356666 43 55666555 999999999999999999999999763 10111100000
Q ss_pred ----cCCCCCeeeeEeecccc----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 ----APVPGTTLGIVRVEGVL----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 ----s~~pgtT~~~i~~~~~l----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+.++.+.+...... .....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 167 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS 167 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 00010000000000000 0112344555664 24577889999999999999999 68888888874
No 338
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.82 E-value=3.7e-09 Score=104.74 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=67.9
Q ss_pred EEcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCCCe-eeeEeecccc---c------c
Q 015085 311 AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPGTT-LGIVRVEGVL---P------A 368 (413)
Q Consensus 311 ~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pgtT-~~~i~~~~~l---~------~ 368 (413)
++|+||+|||||+++|+|+.++++|.+......+ ..+... -+++.| .+.+.+.... . .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 3799999999999999999999999754322211 111111 123322 2322221100 0 0
Q ss_pred ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 12356666775 34678899999999999999999 68999999885
No 339
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.82 E-value=4.1e-09 Score=114.93 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=82.9
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
|.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||++.|+|++.|.+|.+..+.. .+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGL-TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEEEECCCCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 555555555542 3477888 77777787666 9999999999999999999999998653322 22
Q ss_pred ccccccC--CCCCeeeeEeeccc-cc-cc-c---------cccc-cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LP-AQ-A---------KLFD-TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~-~~-~---------~liD-tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.+ +.||-++++.+... .. +. . .+++ .| |+.. -...-..|||||+||+++||++ +++
T Consensus 558 ~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred eEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 2222222 35565555543211 00 00 0 1111 12 2221 1122356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 638 ILILDEpT 645 (711)
T TIGR00958 638 VLILDEAT 645 (711)
T ss_pred EEEEEccc
Confidence 88888863
No 340
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.3e-08 Score=97.04 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=77.7
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCccccccc-------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNIV------------- 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~v------------- 344 (413)
.+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.. + .+|.+......+
T Consensus 9 ~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14255 9 SDVHLFYGKFEALKGI-DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87 (252)
T ss_pred EeEEEEECCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence 3444455555678887 77777888766 99999999999999999864 3 367543222111
Q ss_pred -cccccc--CCCCCeeeeEeecccc---cc-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 -SHLTEA--PVPGTTLGIVRVEGVL---PA-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 -~~~t~s--~~pgtT~~~i~~~~~l---~~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.+..+.+.+.... .. ....++..|+. ..++....||+||+||+.+++++ .|
T Consensus 88 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p 167 (252)
T PRK14255 88 VGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKP 167 (252)
T ss_pred EEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 111111 1222222222211000 00 01123333431 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 168 ~llllDEPt 176 (252)
T PRK14255 168 DVILLDEPT 176 (252)
T ss_pred CEEEEcCCC
Confidence 899999884
No 341
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.82 E-value=3.6e-09 Score=110.56 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=77.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------------ccccc-----CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------------HLTEA-----PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------------~~t~s-----~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+. .+... -++.
T Consensus 262 ~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 262 PSIRDV-SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred ccccee-eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 467777 77778888766 9999999999999999999999997653321111 11110 0121
Q ss_pred Ce------eeeEeeccc----ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT------LGIVRVEGV----LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT------~~~i~~~~~----l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .+.+..... ... ...+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 111110000 000 01234455663 34788999999999999999999 78999999984
No 342
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.3e-09 Score=112.63 Aligned_cols=131 Identities=16% Similarity=0.255 Sum_probs=81.2
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------ 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------ 349 (413)
.|.+....-.|-.+ .+++.+ ++..+.|+++. |||+|+||||+.+.|..++.|.+|.+.-++..++.+..
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~l-sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNL-SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCc-eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 45555555555432 478888 78888888766 99999999999999999999999986644333322211
Q ss_pred ------cC--CCCCeeeeEeecccccccc-------------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 350 ------AP--VPGTTLGIVRVEGVLPAQA-------------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 350 ------s~--~pgtT~~~i~~~~~l~~~~-------------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.+ +.|+-+++|.+-......- .+-..| |.. .-...-..|||||+||++||||| +|
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 11 2344445544421100000 111111 111 01122346999999999999999 78
Q ss_pred CccccCC
Q 015085 405 RTYRIKV 411 (413)
Q Consensus 405 ~~~~l~~ 411 (413)
++..||+
T Consensus 624 ~VLILDE 630 (716)
T KOG0058|consen 624 RVLILDE 630 (716)
T ss_pred CEEEEec
Confidence 8888875
No 343
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.81 E-value=4.6e-09 Score=111.81 Aligned_cols=132 Identities=15% Similarity=0.246 Sum_probs=82.0
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+.. .+
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~i-nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGL-NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEEEECCCCCCCccccce-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 444444445532 3477887 77777887666 9999999999999999999999997653322 12
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cc---------ccccc-c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QA---------KLFDT-P-GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~---------~liDt-p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+...+ +.||-++.+.+... ... .. .+++. | |+.. -......|||||+||+.+||++ .+.
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 2222222 35555555543211 000 00 11111 1 2221 1123457999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|.
T Consensus 497 ililDEpt 504 (576)
T TIGR02204 497 ILLLDEAT 504 (576)
T ss_pred eEEEeCcc
Confidence 88888874
No 344
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.81 E-value=4.4e-09 Score=100.17 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=72.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCC-CCeee
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVP-GTTLG 358 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~p-gtT~~ 358 (413)
.++.+ ++....|++++ +|+||+|||||+++|+|+.+ .+|.+...... +.++... ..+ .+..+
T Consensus 11 ~l~~v-sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPL-SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 34555 66667788776 99999999999999999985 47765422211 1111111 111 12222
Q ss_pred eEeeccc--ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc---------CCccccCCCC
Q 015085 359 IVRVEGV--LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK---------PRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~--l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~---------~~~~~l~~~~ 413 (413)
.+.+... ... ...+++..|+. ..++....||+||+||+.+++++. ++.+.+|+|+
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt 161 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc
Confidence 2221100 000 12345555664 346788999999999999999995 3899999885
No 345
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.81 E-value=3.9e-09 Score=112.24 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=80.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+...... +.
T Consensus 331 i~~~~v~f~y~~~~~~il~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSI-SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEEEcCCCCCccccCe-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 444444444432 3477777 77777776555 99999999999999999999999986543322 22
Q ss_pred cccccC--CCCCeeeeEeeccc--ccc--cccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV--LPA--QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~--l~~--~~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.+ +.||-++.+..... ... -...++.. |+.. -...-..|||||+||++++|++ .+.
T Consensus 410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 332222 24554444433110 000 01122222 2221 1112356999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 490 illLDEpt 497 (571)
T TIGR02203 490 ILILDEAT 497 (571)
T ss_pred EEEEeCcc
Confidence 88888874
No 346
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.80 E-value=5.4e-09 Score=110.88 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=79.4
Q ss_pred EEEeEEEeecCc-----chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc--------
Q 015085 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH-------- 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-----~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~-------- 346 (413)
+.+-.....|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.+.|++|.+......+..
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~v-s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPI-DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 444455555543 2377777 77777887666 99999999999999999999999986533222221
Q ss_pred ----ccccC--CCCCeeeeEeecccccccccccccccccC-------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 ----LTEAP--VPGTTLGIVRVEGVLPAQAKLFDTPGLLH-------PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ----~t~s~--~pgtT~~~i~~~~~l~~~~~liDtpGl~~-------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+.... +.++..+..............++..|+.. .......|||||+||++++|++ .|+.+.+|+
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11111 13343332110000000011222223221 1112367999999999999999 788888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 497 ~t 498 (555)
T TIGR01194 497 WA 498 (555)
T ss_pred Cc
Confidence 73
No 347
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.80 E-value=1.1e-08 Score=109.18 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=82.2
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+-+....|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|.++|.+|.+...... +..
T Consensus 335 i~~~~v~~~y~~~~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDV-SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEEEEECCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 445555556643 3577777 77777777666 99999999999999999999999976432211 111
Q ss_pred cccc--CCCCCeeeeEeeccc-cc-ccc-----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGV-LP-AQA-----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~-l~-~~~-----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+... -+.+|.++.+.+... .. ... .+.+.| |+. .-......|||||+||+.+||+| .|+.+
T Consensus 414 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred EccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2111 124444444433110 00 000 111233 222 11234567999999999999999 78889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 494 ilDEpt 499 (585)
T TIGR01192 494 VLDEAT 499 (585)
T ss_pred EEECCc
Confidence 888874
No 348
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.79 E-value=2.1e-09 Score=113.41 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=78.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+ .+|.+...... +..+... .+
T Consensus 299 ~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNI-SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 3578888 78888888766 99999999999999999985 77875432211 1222221 11
Q ss_pred CC-CeeeeEeeccc-----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGV-----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~-----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+... .. ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|+
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 453 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPT 453 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCc
Confidence 22 22222221100 00 012456666774 24788899999999999999999 68999999884
No 349
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.79 E-value=7e-09 Score=110.85 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=81.5
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+....-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|++.|.+|.+..+... +..
T Consensus 341 i~~~~v~f~y~~~~~il~~i-~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNI-NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEEeCCCCceeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 444444444432 3478888 77777777665 99999999999999999999999976533222 222
Q ss_pred cccc--CCCCCeeeeEeecccccc--ccccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 347 LTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+.+. -++||-++.+........ .....+..| +.. -...-..|||||+||+.+||++ +++.+.
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred EccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2222 235655555443210000 011122222 211 1122356999999999999999 678888
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|.
T Consensus 500 lDEpt 504 (592)
T PRK10790 500 LDEAT 504 (592)
T ss_pred EeCCc
Confidence 88873
No 350
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.79 E-value=5.7e-09 Score=110.53 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=77.6
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------ 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------ 346 (413)
+.+-.....|.. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.++|++|.+..+...+..
T Consensus 323 i~~~~v~f~y~~~~~~l~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPI-NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEEEEEeCCCCeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 444445555543 3477777 77777777666 99999999999999999999999976533222211
Q ss_pred ccccC--CCCCeeeeEeecccccccccccccccccC----CCCC--CCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 347 LTEAP--VPGTTLGIVRVEGVLPAQAKLFDTPGLLH----PNQI--TTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 347 ~t~s~--~pgtT~~~i~~~~~l~~~~~liDtpGl~~----~~~~--~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.. +.+|..+. ...........+++..|+.. .+.. -..|||||+||+++||++ +|+.+.+|+|.
T Consensus 402 v~q~~~lf~~ti~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 402 VFTDFHLFDQLLGPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred EecChhHHHHhhccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11111 12222221 00000000011233333321 1110 247999999999999999 77888888763
No 351
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.78 E-value=1.4e-08 Score=107.43 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=82.1
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....|+ ...+++.+ ++..++|+.++ +|+||+|||||+++|+|.+.|.+|.+...... +.
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGI-SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 44555555553 24578888 77777787666 99999999999999999999999975432211 11
Q ss_pred ccccc--CCCCCeeeeEeeccc-ccc-c-c---------cccc-cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LPA-Q-A---------KLFD-TP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~~-~-~---------~liD-tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... -+++|.++.+..... ... . . .+++ .| |+. .-......|||||+||+++||++ +|+.
T Consensus 396 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 396 YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 22221 134555554432110 000 0 0 1111 11 222 11233567999999999999999 7899
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.+|+|.
T Consensus 476 lilDEpt 482 (544)
T TIGR01842 476 VVLDEPN 482 (544)
T ss_pred EEEeCCc
Confidence 9999874
No 352
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.77 E-value=6.9e-09 Score=107.13 Aligned_cols=122 Identities=22% Similarity=0.311 Sum_probs=79.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC----CCCCccccccccccccc---CCCCCeeeeEe
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG----RGGDGEEKNIVSHLTEA---PVPGTTLGIVR 361 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~----~G~~~~~~~~v~~~t~s---~~pgtT~~~i~ 361 (413)
.+...+++.+ ++...+|+++. ||.+||||||+.++|.|+++.. +|.+......+..++.. .+.|..+..+.
T Consensus 19 ~~~~~~v~~v-sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 19 GGRVPAVRDV-SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred Ccceeeeecc-eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 3334677888 78888888877 9999999999999999999876 56543222211111111 11222222222
Q ss_pred ecc------------------cc----------cccccccccccccCC---CCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 362 VEG------------------VL----------PAQAKLFDTPGLLHP---NQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 362 ~~~------------------~l----------~~~~~liDtpGl~~~---~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+.. .. ....++++..|+..+ +++++.||||++||+++|.+| +|+.+.
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI 177 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE
Confidence 110 00 011357888888643 359999999999999999999 677788
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
+|+|
T Consensus 178 aDEP 181 (539)
T COG1123 178 ADEP 181 (539)
T ss_pred ECCC
Confidence 8876
No 353
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.77 E-value=5.4e-09 Score=109.74 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=77.0
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-----CCCCC
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-----PVPGT 355 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-----~~pgt 355 (413)
.++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +.++... -++..
T Consensus 278 ~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNI-SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred Cccce-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 35666 67777788766 99999999999999999999999976432211 1122211 11222
Q ss_pred e-eeeEee------cccccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRV------EGVLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~------~~~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.. ...... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 2 222110 000000 11345556774 35788899999999999999999 78999999985
No 354
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.76 E-value=9.9e-09 Score=90.56 Aligned_cols=65 Identities=31% Similarity=0.343 Sum_probs=44.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~~~~~~~ 386 (413)
++.++|.+|+|||||||+|+|.. ..++.+||+|.+.....+. .+....++|+||+... +
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----------------~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl----~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----------------QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL----S 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS----S
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccC----C
Confidence 46789999999999999999533 4467899999987653322 2346789999999652 3
Q ss_pred CCCHHH
Q 015085 387 RLTREE 392 (413)
Q Consensus 387 ~LS~ge 392 (413)
..|.+|
T Consensus 62 ~~s~ee 67 (156)
T PF02421_consen 62 SKSEEE 67 (156)
T ss_dssp SSSHHH
T ss_pred CCCcHH
Confidence 466666
No 355
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.76 E-value=8.3e-09 Score=109.79 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=75.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~ 357 (413)
..+++.+ ++..++|+.++ +|+||+|||||+++|+|+++|.+|.+...... +..+... -+.||.+
T Consensus 328 ~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 328 HPALENV-NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CccccCe-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 3577777 77777787666 99999999999999999999999975432211 1122211 1245444
Q ss_pred eeEeeccc-cc-cc-cccccc----------c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LP-AQ-AKLFDT----------P-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~-~~-~~liDt----------p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... .. .. ....+. | |+.. -+.....|||||+||+.+||++ .|+.+.+|+|.
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 54433100 00 00 011111 1 2221 1233467999999999999999 78888888874
No 356
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.75 E-value=9.4e-09 Score=111.89 Aligned_cols=132 Identities=14% Similarity=0.234 Sum_probs=81.5
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------ 345 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------ 345 (413)
+.+-.....|+ ...+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+...+.
T Consensus 456 i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNL-NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 44545555553 23478887 77777776555 9999999999999999999999998653332222
Q ss_pred ccccc--CCCCCeeeeEeeccc-cc-cc-c---------ccc-ccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LP-AQ-A---------KLF-DTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~-~~-~---------~li-Dtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... -++||.++.+..... .. .. . .++ ..| |+.. -......|||||+||+++||++ +|+.
T Consensus 535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 22211 134555555443110 00 00 0 111 122 2321 1223467999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 615 lilDEpt 621 (694)
T TIGR01846 615 LIFDEAT 621 (694)
T ss_pred EEEECCC
Confidence 8888874
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=98.74 E-value=8.2e-09 Score=120.99 Aligned_cols=131 Identities=13% Similarity=0.265 Sum_probs=86.0
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC-CCCcccccccccccccC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR-GGDGEEKNIVSHLTEAP--VP 353 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~-G~~~~~~~~v~~~t~s~--~p 353 (413)
|.+-.+.-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|.+.+.+ |.+. .+..+.++.+.+ +.
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNI-NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-IRGTVAYVPQVSWIFN 692 (1622)
T ss_pred eEEEeeEEEccCCCCCceeece-eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-EcCeEEEEcCccccCC
Confidence 555555566643 3467777 77778887666 99999999999999999999999 7643 233444444444 35
Q ss_pred CCeeeeEeeccccccc--ccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGVLPAQ--AKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~l~~~--~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
||-+++|.+....++. ..+++.-++ .. -...-..|||||+||+.+||++ .++.|.||+|+
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 6777776542211111 111222221 10 0122346999999999999999 78999999885
No 358
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.5e-08 Score=98.02 Aligned_cols=125 Identities=19% Similarity=0.265 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccccccccc---CCCCCee
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIVSHLTEA---PVPGTTL 357 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v~~~t~s---~~pgtT~ 357 (413)
.+..|...+++.+ ++...+|+++. ||.+||||||+.++|+|+++. .+|++......+-.+... .+.|..+
T Consensus 12 ~~~~g~v~av~~v-s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I 90 (316)
T COG0444 12 PTDAGVVKAVDGV-SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEI 90 (316)
T ss_pred ecCCccEEEEece-eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceE
Confidence 3444556778888 78888888777 999999999999999999973 234333222212122211 2334444
Q ss_pred eeEeecc----------------------cc-c------ccccccccccccCC----CCCCCCCCHHHHHHHHHhhhh--
Q 015085 358 GIVRVEG----------------------VL-P------AQAKLFDTPGLLHP----NQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 358 ~~i~~~~----------------------~l-~------~~~~liDtpGl~~~----~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..|.+.. .. . ....+++..|+..+ ++++++||||++|||+||-+|
T Consensus 91 ~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~ 170 (316)
T COG0444 91 AMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL 170 (316)
T ss_pred EEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC
Confidence 4433210 00 0 12346777788754 789999999999999999988
Q ss_pred cCCccccCCC
Q 015085 403 KPRTYRIKVS 412 (413)
Q Consensus 403 ~~~~~~l~~~ 412 (413)
.|+....|+|
T Consensus 171 ~P~LlIADEP 180 (316)
T COG0444 171 NPKLLIADEP 180 (316)
T ss_pred CCCEEEeCCC
Confidence 6777777766
No 359
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.72 E-value=1.9e-08 Score=118.47 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=87.4
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cc
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SH 346 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~ 346 (413)
+.+....+.++ ...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...+..+ ..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~l-sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRL-NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EEEEeEEEEecCCCceEEEee-EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 44455556663 35678888 77778888877 999999999999999999999999754322211 11
Q ss_pred cccc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... -++. |..+.+.+...+.+ ...+++..|+. ..++.+..|||||+||+.++++| .|+.+.||+
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1111 1122 22232222111110 12345666775 35688899999999999999999 678999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 1088 PT 1089 (2272)
T TIGR01257 1088 PT 1089 (2272)
T ss_pred CC
Confidence 84
No 360
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.72 E-value=1.8e-08 Score=118.65 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=87.5
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~ 346 (413)
+......+.|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|...|++|.+...+..+ ..
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~I-Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy 2016 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRL-CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGY 2016 (2272)
T ss_pred EEEEEEEEEECCCCceEEEee-EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEE
Confidence 444555666764 4578888 78888888877 999999999999999999999999865332221 11
Q ss_pred cccc--CCCC-CeeeeEeeccccc---c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVLP---A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l~---~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... -++. |..+.+.+...+. . ..++++..|+. ..++.+..||||++||+.+|++| .|+.+.||+
T Consensus 2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1111 0111 2222222111110 0 01345556665 35788899999999999999999 688999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 2097 PT 2098 (2272)
T TIGR01257 2097 PT 2098 (2272)
T ss_pred CC
Confidence 84
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.68 E-value=2.4e-08 Score=116.87 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=85.0
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCC
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGT 355 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgt 355 (413)
+.+.++...|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|.+++.+|.+.... .+.++.+.+ +.+|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~i-sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWIQNDS 714 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccccCCc
Confidence 555556666653 3477777 77777888666 999999999999999999999999754322 233333332 2455
Q ss_pred eeeeEeeccccccc--ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLPAQ--AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~~~--~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+.+....+.. ..+++.- |.. .-+.....|||||+||+.+||++ .++.|.||+|+
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55655432111110 0111111 111 11234567999999999999999 78899999885
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.66 E-value=9.8e-09 Score=119.81 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=77.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~-- 368 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|.+.... .+.++...+ +++|.++.+.+......
T Consensus 440 ~~l~~i-~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 440 PVLKNI-SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-RISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred cceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 356666 67777788666 999999999999999999999999765322 233333332 35665665543211111
Q ss_pred ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++.-++. .-......|||||+||+.+||++ .++.|.||+|+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 01112211211 01223568999999999999999 78999999985
No 363
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=4.1e-08 Score=108.89 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=78.6
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc--------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL-------- 347 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~-------- 347 (413)
+|.+-...-.|.-+ .+++.+ ++..+.|+.+. ||++|+||||+++.|.+.+.|.+|.+..++..+..+
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~-sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGV-SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCe-EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 45555555566443 567777 67777777555 999999999999999999999999866443333222
Q ss_pred ----cccC--CCCCeeeeEeecccccc--c-------------ccc------cccccccCCCCCCCCCCHHHHHHHHHhh
Q 015085 348 ----TEAP--VPGTTLGIVRVEGVLPA--Q-------------AKL------FDTPGLLHPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 348 ----t~s~--~pgtT~~~i~~~~~l~~--~-------------~~l------iDtpGl~~~~~~~~~LS~ge~q~v~i~r 400 (413)
.+.+ +.+|-.+.+.+. .++ . ..+ +||..-. +-+ .|||||+||++|||
T Consensus 429 iglV~QePvlF~~tI~eNI~~G--~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge---~g~-qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 429 IGLVSQEPVLFATTIRENIRYG--KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE---RGV-QLSGGQKQRIAIAR 502 (1228)
T ss_pred cCeeeechhhhcccHHHHHhcC--CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC---CCC-CCChHHHHHHHHHH
Confidence 1111 122223333321 100 0 011 2222222 222 29999999999999
Q ss_pred hh--cCCccccCCC
Q 015085 401 EL--KPRTYRIKVS 412 (413)
Q Consensus 401 ~l--~~~~~~l~~~ 412 (413)
+| .|+...||++
T Consensus 503 alv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEA 516 (1228)
T ss_pred HHHhCCCEEEecCc
Confidence 99 6888888875
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.65 E-value=2.7e-08 Score=88.64 Aligned_cols=104 Identities=22% Similarity=0.335 Sum_probs=63.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc----cCCCCCeeeeE-eeccccc---
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE----APVPGTTLGIV-RVEGVLP--- 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~----s~~pgtT~~~i-~~~~~l~--- 367 (413)
.+.++|.||+|||||.++|+|..+|++|++..++.. ++.+.. +-.|...++.+ ..+..+.
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~ 120 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccC
Confidence 456699999999999999999999999986533221 111111 11121111111 0111110
Q ss_pred -c---ccccccc---cccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 368 -A---QAKLFDT---PGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 368 -~---~~~liDt---pGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
. ...+++| .|+. ..+-.++.|+.|++|||++||+| .|+....++
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 0 1234444 3665 35677899999999999999998 566555543
No 365
>PLN03232 ABC transporter C family member; Provisional
Probab=98.65 E-value=3.4e-08 Score=115.51 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=83.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|. ...+++.+ ++..++|+.+ +||++|+|||||+++|+|++.|.+|.+..++.. +
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~i-sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGL-SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 355655555663 34578888 7777777654 599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-cccccc----------c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFDT----------P-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liDt----------p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ +.||-++++.......+ . ...++. | |+.. -...-..||+||+||+++||+| +++.
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2233322 35666666543111110 0 111111 2 2321 1122357999999999999999 6788
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1393 LILDEA 1398 (1495)
T PLN03232 1393 LVLDEA 1398 (1495)
T ss_pred EEEECC
Confidence 888875
No 366
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.63 E-value=5.7e-08 Score=104.87 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=77.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc--cCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE--APVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~--s~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|.+++++|.+......+ ..+.. ..+++
T Consensus 22 ~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 22 EVLKGI-SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 477777 77777888777 999999999999999999999999654322111 11111 11233
Q ss_pred Ce-eeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+.. ... ....+++..|+. ..++....||+||+|++.++|++ .|+.+.+|+|+
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~ 172 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 22 22221100 000 012345555664 34677889999999999999999 68999999885
No 367
>PTZ00243 ABC transporter; Provisional
Probab=98.63 E-value=1.9e-08 Score=117.78 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=78.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+.+|.+... ..+.++.+.+ +.+|.++.+.+....+.
T Consensus 673 ~~iL~~i-sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 673 KVLLRDV-SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-RSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred ceeEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-CeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 3467777 77777888666 99999999999999999999999975422 2233333322 24555555543211110
Q ss_pred -cccccc---------cc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFD---------TP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liD---------tp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....++ .. |+. ..+.....|||||+||+.+||++ .++.|.||+|+
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 001111 11 332 12455788999999999999999 68999999985
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=4.9e-08 Score=110.43 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=87.6
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~--pg 354 (413)
|..-++.-.|+. ..-+++| ++..++|+... +|+.|+||||||.+|+|.++..+|.+.-.+ .+.+..+.+| .|
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dI-n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-siaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDI-NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-SVAYVPQQPWIQNG 596 (1381)
T ss_pred EEEeeeeEecCCCCCcccccce-eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-eEEEeccccHhhCC
Confidence 555556666654 2356677 67777887655 999999999999999999999998644322 3556666665 67
Q ss_pred CeeeeEeecccccccc--cc-------cccccccC-----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQA--KL-------FDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~--~l-------iDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|.+++|-+....++.. .+ -|.--+.. -...--.|||||+||+.+|||+ ..+.|.||.||
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 8888876533332210 01 11111111 1112245999999999999999 78999999986
No 369
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=4.1e-08 Score=100.24 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=80.0
Q ss_pred ceEEEeEEEeecCcch-hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC----
Q 015085 279 TKLHFVSAVKNWGLKS-LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV---- 352 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~-Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~---- 352 (413)
..|.+....-.||.+. +++.+ ++..++|+ +.++|.||+||||+||+|++... .+|.+..++..+..++...+
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gv-sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGV-SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecce-eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 3477777888888887 99998 66666665 66699999999999999999998 78886644433333322111
Q ss_pred ---C-------CCeeeeEeeccc---cccc------ccccc----cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 353 ---P-------GTTLGIVRVEGV---LPAQ------AKLFD----TP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 353 ---p-------gtT~~~i~~~~~---l~~~------~~liD----tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
| .|....+.+--. .... ..+-| .| |.. .-...-..|||||+||+.++|++ .+.
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 1 121222211000 0000 01111 11 111 11233456999999999999999 566
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.+|++
T Consensus 508 Il~~DEa 514 (591)
T KOG0057|consen 508 ILLLDEA 514 (591)
T ss_pred eEEecCc
Confidence 6666654
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=98.62 E-value=4.7e-08 Score=114.70 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=82.9
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|.. ..+++.+ ++..++|+ +.+||++|+|||||+++|++++.+.+|.+..++.. +
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~i-s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGL-SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 3555555555643 3578888 77777776 55599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeeccccc-cc-ccccc----------cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLP-AQ-AKLFD----------TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~-~~-~~liD----------tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ +.||-++++....... .. ...++ .| |+.. -...-..||+||+||+++||+| +++.
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 2233322 3566666554311110 00 01111 12 3321 1122357999999999999999 6788
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1396 LILDEA 1401 (1622)
T PLN03130 1396 LVLDEA 1401 (1622)
T ss_pred EEEECC
Confidence 888775
No 371
>PLN03211 ABC transporter G-25; Provisional
Probab=98.61 E-value=4.3e-08 Score=105.77 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=77.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC--CCCCcccccc--------ccccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--RGGDGEEKNI--------VSHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~--~G~~~~~~~~--------v~~~t~s--~~pg- 354 (413)
.++...+++.+ ++....|+++. +|+||+|||||+++|+|...+. +|++..++.. +..+... ..+.
T Consensus 77 ~~~~~~iL~~v-s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 77 QIQERTILNGV-TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred cCCCCeeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcC
Confidence 44445677777 77777888776 9999999999999999998774 6764322211 1222211 1222
Q ss_pred CeeeeEeecc--ccc----c------cccccccccccC------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEG--VLP----A------QAKLFDTPGLLH------PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~--~l~----~------~~~liDtpGl~~------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.. .+. . ...+++..|+.. .++....||+||+||+.++++| .|+.+.||+|.
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 2233332210 000 0 113455556642 1345678999999999999999 68888888874
No 372
>PTZ00243 ABC transporter; Provisional
Probab=98.59 E-value=3.4e-08 Score=115.57 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|. ...+++.+ ++...+|+ +.+||++|+|||||+++|+|++.+.+|.+..++.. +
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~v-sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGV-SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 355544444553 34478888 77777776 45599999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc--cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhhc---CC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKELK---PR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~--~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l~---~~ 405 (413)
..+.+.+ +.||-++++.......+ ....++..|+ .. -...-..||+||+||+++||+|. ++
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 2333322 35666666543111110 0111222222 10 01122569999999999999994 46
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.||++
T Consensus 1467 ILlLDEA 1473 (1560)
T PTZ00243 1467 FILMDEA 1473 (1560)
T ss_pred EEEEeCC
Confidence 7888875
No 373
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.59 E-value=3.2e-08 Score=115.08 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=47.0
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE 339 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~ 339 (413)
.+.+-.....|+. ..+++.+ ++..+.|+++. +|+||+|||||+++|+|++.|.+|.+..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDL-NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 4556666666753 2478888 77778887666 9999999999999999999999998654
No 374
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.58 E-value=4.4e-08 Score=113.90 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=40.5
Q ss_pred eEEEeEEEeecC---cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 280 KLHFVSAVKNWG---LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 280 ~V~~vSa~~~~G---i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
.|.+-...-.|. ...+++.+ ++..++|+.+. ||++|+|||||++.|+|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~l-sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDL-TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCe-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 355556666663 23578888 77777777655 999999999999999999998
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.58 E-value=3.3e-08 Score=100.16 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=77.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc------------ccccccccc--cCCCCCe
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE------------KNIVSHLTE--APVPGTT 356 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~------------~~~v~~~t~--s~~pgtT 356 (413)
...+++.| ++....|+... ||++|+|||||.+.|.|.-.|.+|.+.-+ .+.+.++.+ .-++||.
T Consensus 348 ~~pil~~i-sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGI-SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecc-eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 34677787 77777777655 99999999999999999999999986522 233444443 3467777
Q ss_pred eeeEeecc-ccccc-----------ccc-cccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 357 LGIVRVEG-VLPAQ-----------AKL-FDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 357 ~~~i~~~~-~l~~~-----------~~l-iDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.++|.-.. ..+.. +++ +-.| |.. .-..--..||+||+||+.++|++ .|+...||+|
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 66654221 11110 111 1111 111 01112356999999999999999 6777778876
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=99.20 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=75.1
Q ss_pred EeEEEeecCc-chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC--C-CC-C
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--V-PG-T 355 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~--~-pg-t 355 (413)
+..+..+|+. ..+++.+ ++...+|+ +.++|+||+||||||++|+|...+.+|.+.... -.+.+..+.. + +. |
T Consensus 324 ~~~~~~~y~~~~~l~~~~-s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 324 FENVSKGYDGGRLLLKDL-SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred EeccccccCCCceeecCc-eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCc
Confidence 3444556644 4677777 66665554 666999999999999999999988888543111 0111111110 0 11 1
Q ss_pred eeeeEeecccc---ccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLGIVRVEGVL---PAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~~i~~~~~l---~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+.+...... .....++.-.|+. ...+.+..|||||+.|+++++.+ .|..+.||+|
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 11111100000 0001122223333 23577889999999999999999 6788999887
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.6e-08 Score=89.02 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=35.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+++.+ ++....|++.+ -|++|+|||||+++|.+.+.+++|.+.
T Consensus 26 V~~~v-slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~ 69 (235)
T COG4778 26 VLRNV-SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69 (235)
T ss_pred eeece-eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEE
Confidence 45555 67777787766 899999999999999999999999743
No 378
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.55 E-value=7.4e-08 Score=112.88 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+.+..-.|. ...+++.+ ++..++|+. .+||++|+|||||+++|++++.+.+|.+..++.. +
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~i-s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHI-NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 355555555553 34578888 777777764 5599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-ccccc----------cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFD----------TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liD----------tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+++.+ +.||-++++.......+ . ...++ .| |+.. -...-..||+||+||+++||+| +++.
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 3333332 36766666542111111 1 01111 11 2221 1122356999999999999999 6778
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
+.||++
T Consensus 1443 LiLDEa 1448 (1522)
T TIGR00957 1443 LVLDEA 1448 (1522)
T ss_pred EEEECC
Confidence 888875
No 379
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.55 E-value=8.9e-08 Score=90.31 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=69.4
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------cccccccCCCCCeeee------
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------VSHLTEAPVPGTTLGI------ 359 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------v~~~t~s~~pgtT~~~------ 359 (413)
.+..| ++...+|.+.+ +|+||+||||+|++|+|++.|.+|.+.-.... ++.++ ..-|.....
T Consensus 39 AVqdi-sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~--~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 39 AVQDI-SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG--LVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhee-eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHH--HHhhhhheeeeechh
Confidence 34444 55667788766 99999999999999999999999964411100 00000 001110000
Q ss_pred ---Eee---ccc---------ccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 360 ---VRV---EGV---------LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 360 ---i~~---~~~---------l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+ .+. ++.-.+++|.-|+.+ .....||.||++|+.++.+| .|++.-||+|
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk--~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK--WPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh--hhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 000 000 111124556555554 56788999999999999999 6788888776
No 380
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=2.4e-07 Score=93.24 Aligned_cols=97 Identities=24% Similarity=0.426 Sum_probs=74.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
++..++..+++|++|+|+.+.....+..+..++.+. |+ ++++|+||+|++.. ......++.+.
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~----------g~-----~~vIvvNKWDl~~~--~~~~~~~~k~~ 315 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEA----------GR-----GIVIVVNKWDLVEE--DEATMEEFKKK 315 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc----------CC-----CeEEEEEccccCCc--hhhHHHHHHHH
Confidence 566788999999999999998777788887776543 44 89999999999875 22344455444
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.-+......+..++++||.+++|+..|++.+...
T Consensus 316 i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 316 LRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred HHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 4444454567889999999999999999998543
No 381
>PLN03073 ABC transporter F family; Provisional
Probab=98.53 E-value=2.3e-07 Score=100.87 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=40.8
Q ss_pred ceEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
..|.+-.....||...+++.+ ++....|+.++ ||+||+|||||+++|+|..
T Consensus 176 ~~I~i~nls~~y~~~~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eeEEEceEEEEeCCCEEEECC-EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345555666777777799998 88888887655 9999999999999999863
No 382
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.53 E-value=4e-08 Score=105.52 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=75.8
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccc---------cccccccC--CCC-C
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNI---------VSHLTEAP--VPG-T 355 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~---------v~~~t~s~--~pg-t 355 (413)
...+++.+ +....+|++++ +|+||+|||||+++|+|...+. +|++.-++.. +.++.+.+ ++. |
T Consensus 37 ~~~iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35577777 77778888776 9999999999999999988764 4544322111 12222221 222 3
Q ss_pred eeeeEeeccc--ccc----------cccccccccccC-CCCCCC------CCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--LPA----------QAKLFDTPGLLH-PNQITT------RLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--l~~----------~~~liDtpGl~~-~~~~~~------~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .+. ...+++.-|+.. .+.... .|||||+||+.++++| .|+.+.+|+|.
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 3333322111 110 124566666642 234433 5999999999999999 78888889874
No 383
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7.9e-08 Score=98.11 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=73.0
Q ss_pred hhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc------------ccC--CCCCeee
Q 015085 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT------------EAP--VPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t------------~s~--~pgtT~~ 358 (413)
.+++.+ ++....|+ +.++|++|||||||++.|.|...+++|++..+...+..+. ++. +.+|-++
T Consensus 352 ~~L~~~-~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~ 430 (573)
T COG4987 352 KALKNF-NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430 (573)
T ss_pred chhhcc-ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHH
Confidence 477777 66666665 6669999999999999999999999998664443333322 221 2344444
Q ss_pred eEeecccc--ccc-c----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccCCC
Q 015085 359 IVRVEGVL--PAQ-A----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIKVS 412 (413)
Q Consensus 359 ~i~~~~~l--~~~-~----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~~~ 412 (413)
++..--.. +.. . .+-+.| |+. +-+..-..|||||+||+.+||.+-. -...||+|
T Consensus 431 NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEP 501 (573)
T COG4987 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP 501 (573)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCC
Confidence 44321000 000 0 122222 443 2234456799999999999999943 44556655
No 384
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.52 E-value=2.4e-07 Score=80.14 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=74.6
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccccccc----------cccC--
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNIVSHL----------TEAP-- 351 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~v~~~----------t~s~-- 351 (413)
-+.+...|+..+ ++...+|+|+- +||+|+|||||+.-+.|.+.+. +|++......+..+ ...+
T Consensus 10 l~l~g~cLLa~~-n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lL 88 (213)
T COG4136 10 LRLPGSCLLANV-NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALL 88 (213)
T ss_pred ecCCCceEEEee-eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccc
Confidence 344556677777 67777788766 9999999999999999877532 23211111111111 1111
Q ss_pred CCCCeee-eEee--ccccccc------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTTLG-IVRV--EGVLPAQ------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT~~-~i~~--~~~l~~~------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|....+ .+.+ +..+.+. ...+|..|+. ..++.+..||||++-||.+.|+| .|+...|++||
T Consensus 89 FphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 89 FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred ccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 1211111 1111 0001110 1234445554 35688999999999999999999 78999999986
No 385
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.51 E-value=1.6e-07 Score=85.47 Aligned_cols=98 Identities=21% Similarity=0.324 Sum_probs=65.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...++..+|++++|||+.+.......+..+++... +. |+++|+||+|++... -.+.++++...+
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~----------~~-----p~ivvlNK~D~~~~~-~~~~~~~~~~~l 150 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL----------GI-----PIIVVLNKMDLIEKE-LEEIIEEIKEKL 150 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT----------T------SEEEEEETCTSSHHH-HHHHHHHHHHHH
T ss_pred ccceecccccceeeeeccccccccccccccccccc----------cc-----ceEEeeeeccchhhh-HHHHHHHHHHHh
Confidence 44557789999999999987554444455544332 33 799999999998221 112223333344
Q ss_pred HHHcCCCc--cceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISK--ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~--~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
++..+... ..+|+++||.+|+|++.|++.|.++.
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 45554332 45799999999999999999886654
No 386
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.50 E-value=6e-08 Score=88.60 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred hhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------ccccCCCCCe----
Q 015085 294 SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEAPVPGTT---- 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s~~pgtT---- 356 (413)
.+++.+ ++....++.+ ++|.||+|||||+|+|+|.+.+++|.+......+.. +++.+..||-
T Consensus 20 ~~l~~~-sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 20 RALNGL-SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHhcC-ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 455555 5656666654 499999999999999999999999986644333322 2233333322
Q ss_pred eeeEeeccccccc----------------ccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 357 LGIVRVEGVLPAQ----------------AKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 357 ~~~i~~~~~l~~~----------------~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
++.........+. ...+... |+. +-+.....|||||+|-+.+..+. .|+...||+
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 2110000000000 0111122 343 34677899999999998877766 456655553
No 387
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.50 E-value=5.1e-07 Score=87.06 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.5
Q ss_pred hhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH
Q 015085 181 DFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT 260 (413)
Q Consensus 181 ~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~ 260 (413)
.+.+.|.+.+...+..+|+|++|+|+.+.... ...+.+.+... + .|+++|+||+|+... .
T Consensus 64 ~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~----------~-----~p~ilV~NK~Dl~~~----~ 123 (270)
T TIGR00436 64 SLNRLMMKEARSAIGGVDLILFVVDSDQWNGD-GEFVLTKLQNL----------K-----RPVVLTRNKLDNKFK----D 123 (270)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCch-HHHHHHHHHhc----------C-----CCEEEEEECeeCCCH----H
Confidence 34455666677888999999999999875432 23344433321 2 389999999999743 2
Q ss_pred HHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 261 RFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
.+..+........ .+..++.+||++|.|+++|++.+.+.+..+
T Consensus 124 ~~~~~~~~~~~~~---~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 124 KLLPLIDKYAILE---DFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 2333333333222 234799999999999999999997776553
No 388
>COG1159 Era GTPase [General function prediction only]
Probab=98.50 E-value=5.5e-08 Score=92.97 Aligned_cols=61 Identities=41% Similarity=0.459 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLHPN 382 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~~~ 382 (413)
|-+.++|.+|||||||+|.|.|. ...-+|+.|.||+..+.--.. -+.+..++||||+..+.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~---------------KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ---------------KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC---------------ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 56777999999999999999953 234568889999977654222 23467899999998653
No 389
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.1e-08 Score=89.89 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=74.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccc---------------cCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTE---------------APVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~---------------s~~pg 354 (413)
.++++.+ ++....|++++ +||||+|||||.++|+|.- ..++|++......+..+.+ ..+||
T Consensus 17 keILkgv-nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGV-NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCc-ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 5888888 88889999988 9999999999999999975 5667765543333333222 23455
Q ss_pred Ceee-eEeeccc--cc----------cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 355 TTLG-IVRVEGV--LP----------AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 355 tT~~-~i~~~~~--l~----------~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+.. +++.... .. ...+.....++. ....+-.-+||||++|.-+...+ .|+-..||+|
T Consensus 96 V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 4431 1111000 00 001122233332 12234466999999998887766 7888888876
No 390
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=4.5e-08 Score=91.16 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=74.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc--ccccCCCCCe-eeeEeeccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH--LTEAPVPGTT-LGIVRVEGVLP- 367 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~--~t~s~~pgtT-~~~i~~~~~l~- 367 (413)
...++.| ++..++|+.+. ||.||+|||||+++|+|.++|++|.+....+.... +...-.|..| ++.+.+...+.
T Consensus 40 ~~aL~di-sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDI-SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCc-eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3456666 66667777555 99999999999999999999999975432221111 1111122222 33332211111
Q ss_pred --------cccccccccccc-CCCCCCCCCCHHHHHHHHHh--hhhcCCccccCCC
Q 015085 368 --------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNIN--KELKPRTYRIKVS 412 (413)
Q Consensus 368 --------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~--r~l~~~~~~l~~~ 412 (413)
..-+++|-..+. ..++.....|.|.+-|++.+ ..+.|+.+.||+-
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 012456666665 34678889999999888654 4558888888864
No 391
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.1e-07 Score=95.94 Aligned_cols=131 Identities=20% Similarity=0.333 Sum_probs=80.7
Q ss_pred eEEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC------
Q 015085 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP------ 351 (413)
Q Consensus 280 ~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~------ 351 (413)
.|.+....-+|.. ..++.+| ++....|+.+. ||++|+||||+++.|.+.....+|.+..++..++..|.+.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~di-sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDI-SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCCCceeecc-eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 5777777777764 4567777 67666666555 9999999999999999999999998876666665555432
Q ss_pred -CCC-Ce------eeeEeecccccccc-------------ccccccc-cc-CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 352 -VPG-TT------LGIVRVEGVLPAQA-------------KLFDTPG-LL-HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 352 -~pg-tT------~~~i~~~~~l~~~~-------------~liDtpG-l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
+|. |+ ...|++.-.--..- .++..|. .. .-...--.|||||+|||++||+| +|..
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 232 22 12222210000000 1222221 11 11122346999999999999999 4555
Q ss_pred cccCC
Q 015085 407 YRIKV 411 (413)
Q Consensus 407 ~~l~~ 411 (413)
..||+
T Consensus 696 IlLDE 700 (790)
T KOG0056|consen 696 ILLDE 700 (790)
T ss_pred EEEcc
Confidence 55553
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.46 E-value=1.4e-07 Score=94.40 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=66.4
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---cCCCCCeeeeEeeccc--ccc---ccccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---APVPGTTLGIVRVEGV--LPA---QAKLFDT 375 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---s~~pgtT~~~i~~~~~--l~~---~~~liDt 375 (413)
..|++.+ +|+||-||||+++.|+|.++|++|+ . ..-.+++-.+ ..+.||..+++.-... ... ..+++.-
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~p 442 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP 442 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCC-C-ccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCc
Confidence 3467666 9999999999999999999999995 1 1111111111 1234444333221000 000 1123333
Q ss_pred cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 376 PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 376 pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+. .-++....|||||+|||++|-+| ....|.|++|
T Consensus 443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 3333 23578899999999999999999 5688999987
No 393
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.43 E-value=1.9e-07 Score=92.44 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=70.8
Q ss_pred ccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---------------cC----CCCC
Q 015085 296 IDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------------AP----VPGT 355 (413)
Q Consensus 296 l~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------------s~----~pgt 355 (413)
++.+ ++...+|+ +.+||.+|+|||||=.+|++++.+. |.+...+..+...+. .+ -|-.
T Consensus 303 Vd~i-sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 303 VDGI-SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred eccc-eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 3444 44445565 4559999999999999999999776 765533322222211 11 1222
Q ss_pred eeeeEeeccc------cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLGIVRVEGV------LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~~i~~~~~------l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|.+.|--.+. +. .....+.-.|+. ..+++++++|||++||++|||++ +|+...||+|
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC
Confidence 2221110000 00 001234445665 35799999999999999999998 7888888887
No 394
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=7.4e-08 Score=106.90 Aligned_cols=130 Identities=15% Similarity=0.276 Sum_probs=80.0
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------ 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------ 349 (413)
+|.+-...-.|-. ..+++.+ ++....|+ +.+||++|+||||.|-.|-+.+.|+.|.+..++..++.+..
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l-~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNL-SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCC-cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 4555555555543 2466666 66666776 45599999999999999999999999986654444333221
Q ss_pred ------cC--CCCCeeeeEeeccccc-cccc-------------ccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 ------AP--VPGTTLGIVRVEGVLP-AQAK-------------LFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 ------s~--~pgtT~~~i~~~~~l~-~~~~-------------liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.| +.+|-++.+.+- ... ...+ +...| |+. .-...-..|||||+||++||||| +
T Consensus 1066 i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred cceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 11 123334444432 000 0111 11122 221 11233457999999999999999 7
Q ss_pred CCccccCC
Q 015085 404 PRTYRIKV 411 (413)
Q Consensus 404 ~~~~~l~~ 411 (413)
|+...||+
T Consensus 1145 PkILLLDE 1152 (1228)
T KOG0055|consen 1145 PKILLLDE 1152 (1228)
T ss_pred CCeeeeec
Confidence 88888876
No 395
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.41 E-value=3.1e-07 Score=76.62 Aligned_cols=58 Identities=36% Similarity=0.395 Sum_probs=40.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||||+|++.. ...++..+++|.......+.+ .....++||||+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~---------------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK---------------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST---------------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc---------------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcc
Confidence 36789999999999999999532 223456677877663322222 23457999999975
No 396
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.40 E-value=2.7e-07 Score=93.20 Aligned_cols=60 Identities=32% Similarity=0.390 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
+-++.++|.+|||||||||+|++.. ..-++.+||||+|.+...+.+++ ...++||.|+..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d---------------~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRD---------------RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCC---------------ceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 3467889999999999999999644 23467899999999887655554 367999999974
No 397
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.40 E-value=2e-07 Score=108.27 Aligned_cols=121 Identities=24% Similarity=0.319 Sum_probs=76.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccc--------cccccccC--CCC-Ce
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNI--------VSHLTEAP--VPG-TT 356 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~--------v~~~t~s~--~pg-tT 356 (413)
...+++.+ ++....|++++ +|+||+|||||+|+|+|... +.+|++..++.. +..+.+.. .+. |.
T Consensus 775 ~~~iL~~v-s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNV-DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 34678888 77777888666 99999999999999999986 566765432211 22222211 222 33
Q ss_pred eeeEeecccc------cc------cccccccccccC-CCCCCC----CCCHHHHHHHHHhhhh--cCC-ccccCCCC
Q 015085 357 LGIVRVEGVL------PA------QAKLFDTPGLLH-PNQITT----RLTREEQKLVNINKEL--KPR-TYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~l------~~------~~~liDtpGl~~-~~~~~~----~LS~ge~q~v~i~r~l--~~~-~~~l~~~~ 413 (413)
++.+.+...+ .. ...+++..|+.. .++.+. .||+||+||+.++++| +|+ .+.||+|.
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 3433321111 00 123566666652 345554 7999999999999999 554 57888874
No 398
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.39 E-value=2.7e-07 Score=108.00 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-...-.| +...+++.+ ++..++|+ +.+||.+|+|||||+++|+|++. .+|.+..++.. +
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~i-s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDL-SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 35454444444 345678888 77777776 55599999999999999999986 67875533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-ccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ ++||-++++.......+ . ...++.. |+.. -...-..||+||+|++++||+| +++.
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 2333332 46776666542111110 0 1112222 2211 0112246999999999999999 5677
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1375 LlLDEa 1380 (1490)
T TIGR01271 1375 LLLDEP 1380 (1490)
T ss_pred EEEeCC
Confidence 888775
No 399
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.39 E-value=1.3e-06 Score=75.24 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=56.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..++.+|++++|+|+.+........+.+.+ + .|+++|+||+|+.+.....+..++|.+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-------------~-----~p~ilv~NK~Dl~~~~~~~~~~~~~~~---- 115 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASIF-------------V-----KPVIGLVTKIDLAEADVDIERAKELLE---- 115 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHhc-------------c-----CCeEEEEEeeccCCcccCHHHHHHHHH----
Confidence 457889999999999887654443332221 1 289999999999754333333344432
Q ss_pred HcCCCccceEEEeEEEeecCcchhccch
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
..+ ...++.+||+++.|++++++.+
T Consensus 116 ~~~---~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 116 TAG---AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred HcC---CCcEEEEecCCCCCHHHHHHHH
Confidence 233 2358889999999999998766
No 400
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.37 E-value=4.1e-07 Score=82.59 Aligned_cols=58 Identities=29% Similarity=0.374 Sum_probs=46.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.+|.++|.+|||||||||+|++.. ....+|..||.|+....+. +.....++|.||...
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k--------------~LArtSktPGrTq~iNff~--~~~~~~lVDlPGYGy 82 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQK--------------NLARTSKTPGRTQLINFFE--VDDELRLVDLPGYGY 82 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCc--------------ceeecCCCCCccceeEEEE--ecCcEEEEeCCCccc
Confidence 478999999999999999999643 2356788999998776653 555688999999875
No 401
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=5.4e-07 Score=79.84 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=39.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+-||...-...+ ++....|++.. ||.+|+|||||+++|.+.+.|+.|.+.
T Consensus 14 k~Yg~~~gc~~v-sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~ 64 (258)
T COG4107 14 KLYGPGKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64 (258)
T ss_pred hhhCCCcCcccc-ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEE
Confidence 445555555555 56667788777 999999999999999999999999753
No 402
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.35 E-value=7.6e-08 Score=86.67 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=79.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-ccccccccc--------------
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEA-------------- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s-------------- 350 (413)
.-.+|.-..++.+ ++....|+.-+ +||||+||||++..|.|..+|..|.+.... ..+..+...
T Consensus 12 sVsF~GF~Aln~l-s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 12 SVSFGGFKALNDL-SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred EEEEcceeeeeee-EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence 3455666667777 77777888877 999999999999999999999999754322 111111110
Q ss_pred -CCCC-CeeeeEeecc------------ccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccc
Q 015085 351 -PVPG-TTLGIVRVEG------------VLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYR 408 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~------------~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~ 408 (413)
-+.. |..+.+.+.. ++. ..-.++.+-|+. ..+..+..||-||+|++.|..-+. |+...
T Consensus 91 tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 91 TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE
Confidence 0111 1111111100 000 012456677776 567889999999999999998884 56667
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||+|
T Consensus 171 lDEP 174 (249)
T COG4674 171 LDEP 174 (249)
T ss_pred ecCc
Confidence 7766
No 403
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.34 E-value=1e-06 Score=81.07 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=58.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc--cccccc--cccCCCCC-eeeeEeeccc-------ccccccc
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK--NIVSHL--TEAPVPGT-TLGIVRVEGV-------LPAQAKL 372 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~--~~v~~~--t~s~~pgt-T~~~i~~~~~-------l~~~~~l 372 (413)
..|-+.++|+||+|||||+++|.++..+..|...... ..+-.. .....+.. ....+..... .....++
T Consensus 21 ~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~ 100 (197)
T cd03278 21 PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEI 100 (197)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHH
Confidence 4454556999999999999999988755433100000 000000 00000100 0111111000 0111234
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhhc-----C-CccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKELK-----P-RTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~-----~-~~~~l~~~~ 413 (413)
++..+. .++....||+||+|++.+++++. + +.+.+|+|.
T Consensus 101 l~~~~~--~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 101 IEAPGK--KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred HhCCCc--cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 444333 34678899999999999999973 3 788888874
No 404
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.34 E-value=8.6e-07 Score=83.86 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+.....||+|++|++.+++++. +..+.+|+|.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~ 190 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEID 190 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCc
Confidence 3567889999999999999992 6899999874
No 405
>PRK09866 hypothetical protein; Provisional
Probab=98.33 E-value=2e-06 Score=90.28 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=69.7
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~ 266 (413)
+.+.+++.++|+|++|||+.......+..+.+.+.+. ++ ..|+++|+||+|+.... ...+.+..++
T Consensus 250 k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~----------~K---~~PVILVVNKIDl~dreeddkE~Lle~V 316 (741)
T PRK09866 250 KMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAV----------GQ---SVPLYVLVNKFDQQDRNSDDADQVRALI 316 (741)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc----------CC---CCCEEEEEEcccCCCcccchHHHHHHHH
Confidence 3344568889999999999876555566676666542 21 12899999999997432 1234556665
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+..+...+. .+..|+.+||.+|+|++.|++.|..
T Consensus 317 ~~~L~q~~i-~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 317 SGTLMKGCI-TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHhcCC-CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 544333222 4678999999999999999998854
No 406
>PRK15494 era GTPase Era; Provisional
Probab=98.32 E-value=1.9e-06 Score=85.89 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=67.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...|.+.+..++..+|+|++|+|+.+.....+..+.+.+... + .++++|+||+|+... ....
T Consensus 117 l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~----------~-----~p~IlViNKiDl~~~--~~~~ 179 (339)
T PRK15494 117 LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL----------N-----IVPIFLLNKIDIESK--YLND 179 (339)
T ss_pred HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEEhhcCccc--cHHH
Confidence 4455666677778899999999998875444333444433321 2 267899999998643 2223
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
+.+++ +..+ ....++.+||++|.|+++|++.|.+.+..+
T Consensus 180 ~~~~l----~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 180 IKAFL----TENH--PDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred HHHHH----HhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 33332 2221 235689999999999999999997776653
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.31 E-value=7.1e-07 Score=93.59 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=76.7
Q ss_pred eEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCC--CCCeeee
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGTTLGI 359 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~--pgtT~~~ 359 (413)
++.....|. .+++.+ ++....|+ +.+.|++|||||||+++|+|+-+..+|.+..- ...+-.+.+.+. .||-++.
T Consensus 398 l~l~~p~~~-~ll~~l-~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 398 LSLRTPDGQ-TLLSEL-NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeEECCCCC-eeeccc-eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHH
Confidence 444445444 677777 56666665 55599999999999999999999988864422 111112222221 2444455
Q ss_pred Eeeccccc--cc---cccccccccc-------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 360 VRVEGVLP--AQ---AKLFDTPGLL-------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 360 i~~~~~l~--~~---~~liDtpGl~-------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+.++.... .. ..++...|+. ..++-...||+|||||++.||.+ +|+-.-||+
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 54432111 01 1223333332 23455678999999999999999 666666654
No 408
>PRK00089 era GTPase Era; Reviewed
Probab=98.30 E-value=2.7e-06 Score=82.84 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH
Q 015085 181 DFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT 260 (413)
Q Consensus 181 ~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~ 260 (413)
.+.+.+.+.+...+..+|+|++|+|+.+.....+..+.+.+... + .|+++|+||+|+... ..
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~----------~-----~pvilVlNKiDl~~~---~~ 130 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV----------K-----TPVILVLNKIDLVKD---KE 130 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc----------C-----CCEEEEEECCcCCCC---HH
Confidence 34455566677788899999999999884333344444444321 2 389999999999732 13
Q ss_pred HHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 261 RFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
.+...+....+.. ++.+++.+||+++.|+++|++.+.+....+
T Consensus 131 ~l~~~~~~l~~~~---~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 131 ELLPLLEELSELM---DFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhhC---CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 3334443333322 346799999999999999999987766543
No 409
>PLN03140 ABC transporter G family member; Provisional
Probab=98.29 E-value=2.6e-07 Score=107.39 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=74.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCccccc---------cccccccc--CCCC-Cee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKN---------IVSHLTEA--PVPG-TTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~---------~v~~~t~s--~~pg-tT~ 357 (413)
..+++.+ +.....|++++ +|+||+|||||+|+|+|...+ .+|++..... .+..+.+. ..+. |..
T Consensus 893 ~~iL~~v-s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREV-TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCc-EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3578887 77777888766 999999999999999998753 4565432111 11111111 1222 223
Q ss_pred eeEeecc--cccc----------cccccccccccC-CCCCC-----CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEG--VLPA----------QAKLFDTPGLLH-PNQIT-----TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~--~l~~----------~~~liDtpGl~~-~~~~~-----~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.. .++. ..++++..|+.. .++.. ..||+||+||+.++++| .|+.+.||+|.
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 3332211 0100 123566667652 34443 57999999999999999 78889998874
No 410
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.29 E-value=7.2e-07 Score=88.34 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=76.8
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccccccccc---cCCCCCeee
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIVSHLTE---APVPGTTLG 358 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v~~~t~---s~~pgtT~~ 358 (413)
.+.|..++++.| ++....|+... ||.+|+|||-..++++++++.. +|.+...+..+-.++. ..+.|-.+.
T Consensus 18 ~~~~~~~aVk~i-sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 18 QEGGTVEAVKGI-SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred cCCcceEeeccc-eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 344567778888 77777787665 9999999999999999998541 2222221111111111 112222222
Q ss_pred eEeeccc--cc--------------------------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 359 IVRVEGV--LP--------------------------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 359 ~i~~~~~--l~--------------------------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.|.+... ++ ...++++..||.. .+++++.|||||+|||+||.++ .|
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCC
Confidence 2221100 00 1136788888863 4688999999999999999999 45
Q ss_pred CccccCCC
Q 015085 405 RTYRIKVS 412 (413)
Q Consensus 405 ~~~~l~~~ 412 (413)
+....|+|
T Consensus 177 ~lLIADEP 184 (534)
T COG4172 177 DLLIADEP 184 (534)
T ss_pred CeEeecCC
Confidence 66665655
No 411
>PLN03140 ABC transporter G family member; Provisional
Probab=98.26 E-value=1.7e-07 Score=108.77 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCccccc---------cccccccc--CCCC-Ce
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKN---------IVSHLTEA--PVPG-TT 356 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~---------~v~~~t~s--~~pg-tT 356 (413)
..+++.+ +...+.|++++ +|+||+|||||+++|+|.+.+. +|++.-++. .+..+.+. .++. |.
T Consensus 178 ~~IL~~v-s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 178 LTILKDA-SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred ceeccCC-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4577777 67777888777 9999999999999999999877 676432211 11111111 1122 22
Q ss_pred eeeEeeccccc--------------c-----------------------------cccccccccccC------CCCCCCC
Q 015085 357 LGIVRVEGVLP--------------A-----------------------------QAKLFDTPGLLH------PNQITTR 387 (413)
Q Consensus 357 ~~~i~~~~~l~--------------~-----------------------------~~~liDtpGl~~------~~~~~~~ 387 (413)
.+.+.+..... . ...+++..|+.. .+.....
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 22221110000 0 012445567642 2456788
Q ss_pred CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 388 LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 388 LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|||||+||+.+++++ .|+.+.+|+|.
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPT 364 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEIS 364 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCC
Confidence 999999999999999 67788888874
No 412
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.26 E-value=2.2e-06 Score=79.83 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
++....||+|++|++.+++++. |+.+.+|+|.
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt 159 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 159 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCC
Confidence 4567889999999999999883 6888888874
No 413
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.25 E-value=2.8e-06 Score=73.63 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=60.7
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.+........+|++++|+|+.+........+.+++... + .|+++|+||+|+.... ..
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~----------~-----~piiiv~nK~D~~~~~----~~--- 123 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS----------K-----KPVILVVNKVDNIKEE----DE--- 123 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc----------C-----CCEEEEEECcccCChH----HH---
Confidence 444445566789999999999875555455555555421 2 3899999999997542 11
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...+...+ ...++.+|++++.|++++++.+.+
T Consensus 124 -~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 124 -AAEFYSLG---FGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred -HHHHHhcC---CCCeEEEecccCCCHHHHHHHHHh
Confidence 11122222 246889999999999999988754
No 414
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.22 E-value=3e-07 Score=106.80 Aligned_cols=120 Identities=21% Similarity=0.175 Sum_probs=74.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC----cCCCCCCcccccc-----------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV----DAGRGGDGEEKNI-----------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~----~~~~G~~~~~~~~-----------v~~~t~s--~~pg 354 (413)
..+++.+ +...+.|++++ +|+||+|||||+|+|+|.. .+.+|++.-+... +..+.+. .+|.
T Consensus 74 ~~iL~~v-s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPM-DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4577777 67777888776 9999999999999999986 3567765422211 1122111 1233
Q ss_pred -CeeeeEeeccc----------ccc-----c--ccccccccccC-C-----CCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 355 -TTLGIVRVEGV----------LPA-----Q--AKLFDTPGLLH-P-----NQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 355 -tT~~~i~~~~~----------l~~-----~--~~liDtpGl~~-~-----~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
|..+.+.+... ... . ..+++..|+.. . +.....|||||+||+.++++| .|+.+.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 22232222100 000 0 12455667752 2 234567999999999999999 788888
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|.
T Consensus 233 lDEPT 237 (1394)
T TIGR00956 233 WDNAT 237 (1394)
T ss_pred EeCCC
Confidence 88873
No 415
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.19 E-value=1.1e-05 Score=70.79 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=58.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....+|++++|+|+.+........+.+.+.. .+ .|+++|+||+|+.... ......+.....+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~----------~~-----~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~ 142 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE----------EG-----KALVIVVNKWDLVEKD--SKTMKEFKKEIRR 142 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh----------cC-----CCEEEEEeccccCCcc--HHHHHHHHHHHHh
Confidence 44567899999999987654333333332221 12 3899999999997542 1223333333323
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
..+......++.+||+.+.|++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 22221234689999999999999988774
No 416
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.19 E-value=8.8e-06 Score=72.89 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=61.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|.+++|+|+.+........+...+.. .+ .|+++|+||+|+.... ......+++++.++
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~----------~~-----~~i~iv~nK~D~~~~~-~~~~~~~~~~~~~~ 144 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIARE----------GG-----LPIIVAINKIDRVGEE-DLEEVLREIKELLG 144 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH----------CC-----CCeEEEEECCCCcchh-cHHHHHHHHHHHHc
Confidence 44557899999999987543333333332221 12 3899999999998532 22333444544444
Q ss_pred HcCC----------CccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGI----------SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~----------~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+. ....+++.+||++++|++++++.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3331 1235789999999999999998886544
No 417
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.8e-06 Score=87.39 Aligned_cols=71 Identities=31% Similarity=0.417 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC-CCC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH-PNQ 383 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~-~~~ 383 (413)
+-.+.++|++|||||||+|+|+... ..-+++.||||+|.+...+..++ ...|.||.|+.. .+.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~d---------------rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~ 332 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSRED---------------RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND 332 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC---------------ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC
Confidence 3478889999999999999999533 34568999999999887665544 467999999986 455
Q ss_pred CCCCCCHH
Q 015085 384 ITTRLTRE 391 (413)
Q Consensus 384 ~~~~LS~g 391 (413)
.+..++-.
T Consensus 333 ~iE~~gI~ 340 (531)
T KOG1191|consen 333 GIEALGIE 340 (531)
T ss_pred hhHHHhHH
Confidence 55555443
No 418
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.15 E-value=2.1e-06 Score=80.72 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=32.7
Q ss_pred cccccccc--CCCCCCCCCCHHHHHHHHHhhhhc--C--CccccCCCC
Q 015085 372 LFDTPGLL--HPNQITTRLTREEQKLVNINKELK--P--RTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l~--~--~~~~l~~~~ 413 (413)
+++..|+. ..++....||+||+||+.+++++. | +.+.+|+|+
T Consensus 120 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt 167 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS 167 (226)
T ss_pred HHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 44455664 246788999999999999999994 4 488888874
No 419
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.15 E-value=3.9e-06 Score=81.22 Aligned_cols=87 Identities=24% Similarity=0.259 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCCCCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~~~~~ 385 (413)
..+++.|.+|||||||++.|++. ...+.++|-||.+..--.+..+ ....++|||||.. +..
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~A----------------kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLD--RPl 230 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTA----------------KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLD--RPL 230 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcC----------------CCccCCCCccccceeEeeeecCCceEEEecCCcccC--CCh
Confidence 46777999999999999999953 2345678888876643222222 2467999999986 667
Q ss_pred CCCCHHHHHHHHHhhhhcC-CccccCC
Q 015085 386 TRLTREEQKLVNINKELKP-RTYRIKV 411 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l~~-~~~~l~~ 411 (413)
++...=|+|-+.--+-|.. -.|.+|+
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~ 257 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDP 257 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcC
Confidence 7788888887654444432 3344443
No 420
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.15 E-value=8.2e-06 Score=83.78 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=63.1
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++++|+|+.+.....+..+.+.+.. .++ |+++|+||+|++.. ......+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~---~~~~~~~~~~ 308 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILE----------AGK-----ALVIVVNKWDLVKD---EKTREEFKKE 308 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----------cCC-----cEEEEEECcccCCC---HHHHHHHHHH
Confidence 44556788999999999987644334444443322 133 89999999999822 2333333333
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
............++.+||++|+|++++++.+.+..
T Consensus 309 ~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 309 LRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred HHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222222335799999999999999998886543
No 421
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.15 E-value=2e-06 Score=82.93 Aligned_cols=59 Identities=32% Similarity=0.339 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecc-cccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG-VLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~-~l~~~~~liDtpGl~~ 380 (413)
|.+.++|.+|||||||+|+|+|.. ...+++.|+||++.+.... .......++||||+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~---------------~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~ 60 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK---------------ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE 60 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---------------EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCC
Confidence 467889999999999999999532 1235678899987543211 1123467899999974
No 422
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.14 E-value=4.2e-06 Score=70.03 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=85.6
Q ss_pred CCccchhhh-hhhhcCcccccccccC----CCCchhhHH-HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhH
Q 015085 152 KPVVCARCH-ALRHYGKVKDVTVENL----LPDFDFDHT-VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (413)
Q Consensus 152 ~~~~C~RC~-~l~hy~~~~~~~i~~~----~p~~~~~~~-l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~ 225 (413)
++.+||.-+ ...+|.+.+.+++.+- -|.+.|.+. ....+.-...++|++++|..+.|....+.+.+.....
T Consensus 14 KTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~--- 90 (148)
T COG4917 14 KTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV--- 90 (148)
T ss_pred chhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccc---
Confidence 455666533 2336766665553211 266667643 4566667788999999999999987777777655432
Q ss_pred hHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 226 ~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+++|-|+||+||.. ....+..+.|+++ .| -.+|+.+|+....|+++|++.+..
T Consensus 91 ---------------k~vIgvVTK~DLae-d~dI~~~~~~L~e----aG---a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 91 ---------------KKVIGVVTKADLAE-DADISLVKRWLRE----AG---AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ---------------cceEEEEecccccc-hHhHHHHHHHHHH----cC---CcceEEEeccCcccHHHHHHHHHh
Confidence 37999999999973 2244556666543 44 368999999999999999988744
No 423
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.13 E-value=1.1e-05 Score=79.97 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
+.....+.++.++++++|+|+.+...+ ....+..+.... ... .....+ +|+++|+||+|+... ...++
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL-~~~-~~~l~~-----kp~IIV~NK~DL~~~----~~~~~ 293 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNEL-KKY-SPELAE-----KPRIVVLNKIDLLDE----EELAE 293 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHH-HHh-hhhhcc-----CCEEEEEeCccCCCh----HHHHH
Confidence 455666677889999999999875322 112222222111 000 000012 389999999999754 22333
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+.+.+.+..+ ..++.+||++++|+++|++.|.+.
T Consensus 294 ~~~~l~~~~~----~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 294 LLKELKKALG----KPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred HHHHHHHHcC----CcEEEEEccCCcCHHHHHHHHHHH
Confidence 3333333333 368999999999999999888543
No 424
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.12 E-value=1.3e-05 Score=73.66 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=58.1
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
..+..++..+|++++|||+.+........+.+++... ++ +++|+|+||+|+.......+.+.+.++
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----------~~----~~iIvviNK~D~~~~~~~~~~~~~~i~ 145 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV----------GV----PYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CcEEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 3445667789999999999876554445555554432 32 247899999999743211223344455
Q ss_pred HHHHHcCCC-ccceEEEeEEEeecCcc
Q 015085 268 QRAREDGIS-KITKLHFVSAVKNWGLK 293 (413)
Q Consensus 268 ~~~~~~g~~-~~~~V~~vSa~~~~Gi~ 293 (413)
..+...|.. ....++++||.+|++..
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCC
Confidence 555555531 12468999999998754
No 425
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=3.5e-06 Score=90.30 Aligned_cols=121 Identities=26% Similarity=0.355 Sum_probs=72.4
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC---CCCCCcccc---------cccccccccC--CCCC
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA---GRGGDGEEK---------NIVSHLTEAP--VPGT 355 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~---~~G~~~~~~---------~~v~~~t~s~--~pgt 355 (413)
..+.+++.| +...+.|++.. +|++|+|||||+|+|+|.... .+|.+.-++ ....++++.. +|..
T Consensus 41 ~~k~iL~~v-sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGV-SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCc-EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 457888888 66667788877 999999999999999998864 234322111 0111111111 1222
Q ss_pred ee-eeEeec--ccccc----------cccccccccccC-CCCCCC-----CCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TL-GIVRVE--GVLPA----------QAKLFDTPGLLH-PNQITT-----RLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~-~~i~~~--~~l~~----------~~~liDtpGl~~-~~~~~~-----~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|. +.+.+. .+++. .-.+++.-|+.+ .+.... -+||||++|+.++-+| .|...-+|+|
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEP 197 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEP 197 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCC
Confidence 21 111110 01111 124566666652 344443 5999999999999999 6777777776
No 426
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=6.2e-06 Score=93.78 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=82.0
Q ss_pred eEEE--eEEEeecCcchhccchhhhcccCC-cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------
Q 015085 280 KLHF--VSAVKNWGLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------ 344 (413)
Q Consensus 280 ~V~~--vSa~~~~Gi~~Ll~~I~~l~~~~g-~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------ 344 (413)
.|.+ ++.....+...+++.| ++...+| +|.+||.+|+|||||+++|.++..+.+|.+..++-.+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~i-s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGI-SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCc-eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 3444 4555555667888888 5655555 5777999999999999999999999999866443332
Q ss_pred ccccccC--CCCCeeeeEeecccc-cccc----------ccc-ccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVL-PAQA----------KLF-DTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l-~~~~----------~li-Dtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+++.+ +.||.+.++.-.... ++.. ..+ ..| |+.. -..--..+|-||+|.+++||+| +.+.
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 2333333 367766544311111 1111 111 233 2321 1122367999999999999999 5677
Q ss_pred cccCC
Q 015085 407 YRIKV 411 (413)
Q Consensus 407 ~~l~~ 411 (413)
..||+
T Consensus 1297 LvLDE 1301 (1381)
T KOG0054|consen 1297 LVLDE 1301 (1381)
T ss_pred EEEec
Confidence 77765
No 427
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.11 E-value=5.6e-06 Score=76.95 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------------~~~~~l~~~~ 413 (413)
++....||+||+|++.+++++. ++.+.+|+|+
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~ 161 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF 161 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence 5667889999999999999994 4678888874
No 428
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.11 E-value=4e-06 Score=79.91 Aligned_cols=60 Identities=27% Similarity=0.433 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.-++.++|.+|||||||+|+|+|... ..++.+.++|.....+.... .....++||||+..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~---------------~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERK---------------AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 34788899999999999999996532 12234455555544332222 22468999999975
No 429
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.09 E-value=6.8e-06 Score=84.74 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=73.7
Q ss_pred eEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc----cccccccccCC--CCCe
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK----NIVSHLTEAPV--PGTT 356 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~----~~v~~~t~s~~--pgtT 356 (413)
++...-.+...|++.+ ++....|. +.+.|+||+|||+|++.|.|+-+..+|.+..-. ..+-.+.+.++ -||-
T Consensus 439 v~l~tPt~g~~lie~L-s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTL 517 (659)
T KOG0060|consen 439 VSLSTPTNGDLLIENL-SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTL 517 (659)
T ss_pred eeecCCCCCceeeeee-eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccch
Confidence 3333444445566666 55555554 566999999999999999999987777543211 11222333322 3444
Q ss_pred eeeEeeccccc----cc------ccccccc----------ccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 357 LGIVRVEGVLP----AQ------AKLFDTP----------GLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 357 ~~~i~~~~~l~----~~------~~liDtp----------Gl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
++.+-++..-. +. ..+++.. |+. ......+.||+||+||++.||-+ +|+--.||+
T Consensus 518 RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 55544431100 00 0111111 222 12344678999999999999998 777666664
No 430
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.08 E-value=1.1e-05 Score=71.47 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=58.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
+..++..+|++++|+|+.+........+.++. .+ .|+++|+||+|+... ....+.+|+
T Consensus 58 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~------------~~-----~~ii~v~nK~Dl~~~--~~~~~~~~~--- 115 (158)
T PRK15467 58 LITTLQDVDMLIYVHGANDPESRLPAGLLDIG------------VS-----KRQIAVISKTDMPDA--DVAATRKLL--- 115 (158)
T ss_pred HHHHHhcCCEEEEEEeCCCcccccCHHHHhcc------------CC-----CCeEEEEEccccCcc--cHHHHHHHH---
Confidence 33456789999999999876543333322210 12 389999999998532 233344443
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+. ...++.+||+++.|+++|++.+.+..
T Consensus 116 -~~~~~--~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 116 -LETGF--EEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred -HHcCC--CCCEEEEECCCccCHHHHHHHHHHhc
Confidence 33332 14789999999999999999886543
No 431
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.08 E-value=3.5e-06 Score=77.91 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHH------HHHhhhh--cCCccccCCCC
Q 015085 382 NQITTRLTREEQKL------VNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~------v~i~r~l--~~~~~~l~~~~ 413 (413)
++....||+||+|+ +.+++++ .|+.+.+|+|+
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 45678999999996 5677787 78999999885
No 432
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.08 E-value=1.1e-06 Score=88.23 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=66.6
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc---cccccc-----------------ccc-----------cC
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE---KNIVSH-----------------LTE-----------AP 351 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~---~~~v~~-----------------~t~-----------s~ 351 (413)
+..|++.. +|+||.||||.+++|+|.+.|.-|..... ...+.+ +.. ..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 35567666 99999999999999999998877752210 000000 000 01
Q ss_pred CCCCeeeeEeecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 352 VPGTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 352 ~pgtT~~~i~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+-|++.+.+.-.-.....-++++..++.+ .++-.+.|||||+||++++-++ ....|-.++|
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 12333222221000011124666677763 4688999999999999999999 4567777765
No 433
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.08 E-value=2.1e-05 Score=73.88 Aligned_cols=89 Identities=24% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|++++|+|+.......+..+.+++... ++ |+++|+||+|+++.... ......++..++..|
T Consensus 108 ~~~D~~llVvda~~g~~~~d~~~l~~l~~~----------~i-----p~ivvvNK~D~~~~~~~-~~~~~~l~~~L~~~g 171 (224)
T cd04165 108 YAPDYAMLVVAANAGIIGMTKEHLGLALAL----------NI-----PVFVVVTKIDLAPANIL-QETLKDLKRILKVPG 171 (224)
T ss_pred cCCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC-----CEEEEEECccccCHHHH-HHHHHHHHHHhcCCC
Confidence 368999999999876665566666665432 33 89999999999754211 111111222222111
Q ss_pred C----------------------CccceEEEeEEEeecCcchhccch
Q 015085 275 I----------------------SKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 275 ~----------------------~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
. ....+|+.+|+.+|.|++.|.+.|
T Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 172 VRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred ccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 0 123378899999999999988877
No 434
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.07 E-value=1.3e-05 Score=70.01 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=55.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+...........++... + .+|+++|+||+|+.... ........+.+.
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~----------~----~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~ 132 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL----------G----IKRGLVVLTKADLVDED-WLELVEEEIREL 132 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh----------C----CCcEEEEEECccccCHH-HHHHHHHHHHHH
Confidence 34556789999999999763222111211222110 1 13899999999997431 011112222233
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
++..+. ....++.+||+++.|++++++.+.
T Consensus 133 ~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 133 LAGTFL-ADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHhcCc-CCCcEEEEeCCCCcCHHHHHHHHh
Confidence 332211 124689999999999999988763
No 435
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.07 E-value=1.2e-05 Score=82.67 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=62.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+..+++..+|++++|+|+.+.....+..+.+++.. .++ ++++|+||+|+... ....++...
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~----------~~~-----~~ivv~NK~Dl~~~----~~~~~~~~~ 308 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALE----------AGR-----ALVIVVNKWDLVDE----KTMEEFKKE 308 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----cEEEEEECccCCCH----HHHHHHHHH
Confidence 44556788999999999987654444444444332 133 89999999999733 223333222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...........+++.+||++++|++++++.+.+.
T Consensus 309 ~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 309 LRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred HHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222222233579999999999999999888554
No 436
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.07 E-value=3.1e-06 Score=86.57 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=69.5
Q ss_pred hhccchhhhccc-CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-cccccccccc-----CCCCCeeeeEeecc--
Q 015085 294 SLIDDVVDLAGK-RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEA-----PVPGTTLGIVRVEG-- 364 (413)
Q Consensus 294 ~Ll~~I~~l~~~-~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s-----~~pgtT~~~i~~~~-- 364 (413)
.++..+ ++... ...+.+||+||+||||||+++.|.+.|..|.+... ...+....+. .+.-+.++++.-.+
T Consensus 404 ~iy~~l-~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~ 482 (614)
T KOG0927|consen 404 MIYKKL-NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD 482 (614)
T ss_pred hhhhhh-hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc
Confidence 455555 44333 33567799999999999999999999999965421 1111100000 00000000000000
Q ss_pred --cccccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 --VLPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 --~l~~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....-..++.-.|+.. .......||+|++.||+.++.+ .|....||+|+
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 0001123455556652 2456789999999999999988 67888888875
No 437
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.06 E-value=4e-06 Score=76.80 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=38.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
++.++|.+|+|||||+|+|+|......+ ...+++|.+.......+ .....++||||+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEECCeEEEEEECcCCCCc
Confidence 4778999999999999999975422111 11234444432221112 235789999999753
No 438
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.05 E-value=1.1e-05 Score=71.17 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=56.7
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
.+.+..+|++++|+|+.+...+ ...+..+..... .+.... ...|+++|+||+|+.+.. ...+|.....
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~-~~~~~~~~~~l~-----~~~~~~--~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~ 140 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDP-VEDYKTIRNELE-----LYNPEL--LEKPRIVVLNKIDLLDEE----ELFELLKELL 140 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCH-HHHHHHHHHHHH-----HhCccc--cccccEEEEEchhcCCch----hhHHHHHHHH
Confidence 3445568999999999875212 122222222110 000000 113899999999997653 2334444444
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+... ...++.+||+.+.|++++++.+.+
T Consensus 141 ~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 141 KELW---GKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred hhCC---CCCEEEEecCCCCCHHHHHHHHHh
Confidence 3321 145889999999999999988743
No 439
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.05 E-value=1.9e-05 Score=78.49 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.....+.++.+++++||+|+++.. + ...+..+.... ..+.... ..+|+++|+||+|+.+.... ....
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~-s-~e~~~~~~~EL-----~~~~~~L--~~kp~IIV~NKiDL~~~~~~---~~~~ 293 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVD-P-VEDYKTIRNEL-----EKYSPEL--ADKPRILVLNKIDLLDEEEE---REKR 293 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCC-C-HHHHHHHHHHH-----HHhhhhc--ccCCeEEEEECcccCCchhH---HHHH
Confidence 5556667788899999999998754 2 22222222211 1111100 11389999999999754211 1111
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+...+..+ ..++.+||+++.|+++|++.|.+..
T Consensus 294 ~~~~~~~~~----~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 294 AALELAALG----GPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 222222222 3689999999999999999886554
No 440
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.5e-06 Score=85.09 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=75.4
Q ss_pred EEeec-Ccchhccchhhhc-ccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc-ccccccc---CC--CCCee
Q 015085 286 AVKNW-GLKSLIDDVVDLA-GKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-VSHLTEA---PV--PGTTL 357 (413)
Q Consensus 286 a~~~~-Gi~~Ll~~I~~l~-~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-v~~~t~s---~~--pgtT~ 357 (413)
..-+| |.+.|+..+ ++- .....|.+|||||+|||||++.|+|.+.|..|+....... +...... .+ -.|..
T Consensus 592 VtFgy~gqkpLFkkl-dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~ 670 (807)
T KOG0066|consen 592 VTFGYPGQKPLFKKL-DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPV 670 (807)
T ss_pred ccccCCCCCchhhcc-cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHH
Confidence 34455 566777766 332 2334688899999999999999999999999964432111 1100000 00 00111
Q ss_pred eeEeeccccc--cccccccccccc-CCCC-CCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 358 GIVRVEGVLP--AQAKLFDTPGLL-HPNQ-ITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 358 ~~i~~~~~l~--~~~~liDtpGl~-~~~~-~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+++.-.+-++ .....+.+.|+. +.+. ....||||++.||+++--- .|.+..|++|
T Consensus 671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 2211111111 123456778886 3332 3678999999999988543 6788888876
No 441
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.05 E-value=1.6e-05 Score=73.40 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred HHHhhhcCCCcEEEEEEeCCCC-CCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~-~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
......+..+|++++|+|+.+. ...........+... +. +++++|+||+|+.... ......+.+
T Consensus 98 ~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~----------~~----~~iiivvNK~Dl~~~~-~~~~~~~~i 162 (203)
T cd01888 98 ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM----------GL----KHIIIVQNKIDLVKEE-QALENYEQI 162 (203)
T ss_pred HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc----------CC----CcEEEEEEchhccCHH-HHHHHHHHH
Confidence 3445566678999999999873 222222222222211 21 3789999999997431 011111222
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+..... ....++.+||+++.|+++|++.+.+...
T Consensus 163 ~~~~~~~~~-~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 163 KKFVKGTIA-ENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHhcccc-CCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 222222111 1246899999999999999998866544
No 442
>COG2262 HflX GTPases [General function prediction only]
Probab=98.05 E-value=2.3e-05 Score=78.12 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=65.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCc-hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSF-PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~-~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
..+....+|+++||||++|+.... .....+.|... +. ...|+|+|+||+|++.... ....+
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----------~~--~~~p~i~v~NKiD~~~~~~----~~~~~-- 326 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----------GA--DEIPIILVLNKIDLLEDEE----ILAEL-- 326 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----------CC--CCCCEEEEEecccccCchh----hhhhh--
Confidence 344556799999999999872111 12223333321 11 2249999999999986532 11111
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-CCcEEE-EcCCCCc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-RGNVWA-IGAQNAG 318 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-~g~~~~-vG~ng~G 318 (413)
... ....+++||++++|++.|.+.|...... ...+.+ +.....|
T Consensus 327 --~~~----~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~ 372 (411)
T COG2262 327 --ERG----SPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAG 372 (411)
T ss_pred --hhc----CCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccccc
Confidence 111 1257899999999999999998766542 223444 7777777
No 443
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.04 E-value=2.2e-06 Score=84.75 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=36.8
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v 344 (413)
++..++|++++ +|.||+|||||+..|+|+..|++|++..+++.+
T Consensus 343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 55567888777 999999999999999999999999876554444
No 444
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.6e-06 Score=85.69 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=73.0
Q ss_pred ceEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc--ccc-ccccccCCCC
Q 015085 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK--NIV-SHLTEAPVPG 354 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~--~~v-~~~t~s~~pg 354 (413)
.+|+...-.-.+|...|+..- ++...+|.-|. ||+||+|||||+++|.. |.+.... ..+ ..-+.....+
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a-~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKA-NLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred cceeeeeeeeeecchhhhcCC-ceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 356665666677888888776 66666676666 99999999999999985 1111000 000 0000000000
Q ss_pred Ce-----eeeEeeccccc---ccccccc----cccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 355 TT-----LGIVRVEGVLP---AQAKLFD----TPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 355 tT-----~~~i~~~~~l~---~~~~liD----tpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+- .+++.....+. ...++++ -.|+.. ..+.+..||||.+.|+++|||+ +|+...||+|
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 00 01111000000 0122333 344432 2467899999999999999999 7888999887
No 445
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.01 E-value=1.2e-05 Score=76.57 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 383 QITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
.....||+|++|++.++++|. ++.+.+|+|.
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt 198 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVD 198 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 567899999999999999883 4888899874
No 446
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.00 E-value=9.1e-06 Score=85.61 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=48.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~~~~~~ 386 (413)
.+.++|.+|+|||||||+|+| ....+++|||+|.+...-.... .+...++|.||+....
T Consensus 5 ~valvGNPNvGKTtlFN~LTG----------------~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~---- 64 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTG----------------ANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT---- 64 (653)
T ss_pred eEEEecCCCccHHHHHHHHhc----------------cCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC----
Confidence 467799999999999999995 3456789999999875533222 2346899999997532
Q ss_pred CCCHHHH
Q 015085 387 RLTREEQ 393 (413)
Q Consensus 387 ~LS~ge~ 393 (413)
..|.+|+
T Consensus 65 ~~S~DE~ 71 (653)
T COG0370 65 AYSEDEK 71 (653)
T ss_pred CCCchHH
Confidence 2366663
No 447
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.00 E-value=4.5e-05 Score=66.20 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=62.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.....+..+|.+++|+|+.+........+.+.+... + .|+++|+||+|+... ...+.++...
T Consensus 75 ~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~----------~-----~~~iiv~nK~Dl~~~---~~~~~~~~~~ 136 (168)
T cd04163 75 AAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS----------K-----TPVILVLNKIDLVKD---KEDLLPLLEK 136 (168)
T ss_pred HHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh----------C-----CCEEEEEEchhcccc---HHHHHHHHHH
Confidence 344456778999999999987444444554544321 2 289999999999742 2344555544
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..... ....++.+|++++.|++++++.|.+
T Consensus 137 ~~~~~---~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 137 LKELG---PFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred HHhcc---CCCceEEEEeccCCChHHHHHHHHh
Confidence 43332 2357899999999999999888743
No 448
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.98 E-value=1.3e-05 Score=73.83 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhh------cCCccccCCCC
Q 015085 381 PNQITTRLTREEQKLVNINKEL------KPRTYRIKVSL 413 (413)
Q Consensus 381 ~~~~~~~LS~ge~q~v~i~r~l------~~~~~~l~~~~ 413 (413)
.++....||+|++|++.+++++ .|+.+.+|+|+
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 3567889999999999999988 78999999884
No 449
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.98 E-value=6.7e-06 Score=83.36 Aligned_cols=57 Identities=32% Similarity=0.287 Sum_probs=42.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc--cccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~--~~~liDtpGl~~ 380 (413)
+|.+||.+|||||||||+|++.. ..++..|+||+..+........ ...++||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k----------------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK----------------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc----------------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 68899999999999999998421 2457789999876554322322 378999999974
No 450
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.98 E-value=4.7e-06 Score=80.40 Aligned_cols=55 Identities=33% Similarity=0.352 Sum_probs=38.1
Q ss_pred EEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc------------------cccc
Q 015085 310 WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP------------------AQAK 371 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~------------------~~~~ 371 (413)
.+||.+|||||||||+|++.. ..++.+|+||++...-..... ....
T Consensus 2 givG~PN~GKSTLfn~Lt~~~----------------~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~ 65 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAG----------------AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIE 65 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCC----------------CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEE
Confidence 569999999999999999543 234566888866533111111 1368
Q ss_pred ccccccccC
Q 015085 372 LFDTPGLLH 380 (413)
Q Consensus 372 liDtpGl~~ 380 (413)
++|+||+..
T Consensus 66 lvD~pGl~~ 74 (274)
T cd01900 66 FVDIAGLVK 74 (274)
T ss_pred EEECCCcCC
Confidence 999999984
No 451
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.98 E-value=3e-05 Score=78.63 Aligned_cols=107 Identities=22% Similarity=0.278 Sum_probs=63.0
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
+..++.++++.++++++|+|+..+... ....+..++... ......+ .+ +|+++|+||+|++.. ..+.+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL-~~~~~~L-~~-----kP~IlVlNKiDl~~~----~el~~ 295 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINEL-EKYSPKL-AE-----KPRWLVFNKIDLLDE----EEAEE 295 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHH-Hhhhhhh-cC-----CCEEEEEeCCccCCh----HHHHH
Confidence 445566678899999999998844211 112222222211 0000000 12 389999999999744 22333
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.++.+.+..+. ...|+.+||+++.|+++|++.|.+++..
T Consensus 296 ~l~~l~~~~~~--~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 296 RAKAIVEALGW--EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHhCC--CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 33333333221 1258999999999999999988766543
No 452
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.96 E-value=2.8e-05 Score=70.82 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH--
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW-- 265 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~-- 265 (413)
+.....+..+|.+++|+|+.+...........+... .+ .|+++|+||+|+..........+++
T Consensus 83 ~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~----------~~-----~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 83 RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI----------LC-----KKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH----------cC-----CCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 344455667899999999987543222111111111 12 2899999999997432111112222
Q ss_pred -HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 -VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 -~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+...+...+. ....++.+||+++.|+++|++.+.+..
T Consensus 148 ~l~~~~~~~~~-~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 148 KLQKTLEKTRF-KNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHhcCc-CCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2111211121 124689999999999999999886544
No 453
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.96 E-value=3.8e-05 Score=68.50 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=54.8
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+............+.. .++ |+++|+||+|+.... ..... .+..
T Consensus 85 ~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~~--~~~~~---~~~~ 144 (179)
T cd01890 85 SRSLAACEGALLLVDATQGVEAQTLANFYLALE----------NNL-----EIIPVINKIDLPSAD--PERVK---QQIE 144 (179)
T ss_pred HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----------cCC-----CEEEEEECCCCCcCC--HHHHH---HHHH
Confidence 345567899999999987543222111111111 132 899999999986431 11111 1222
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+. ....++.+||++|.|+++|++.+.+.
T Consensus 145 ~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 145 DVLGL-DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHhCC-CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 23332 22358999999999999999888543
No 454
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.95 E-value=4.2e-06 Score=83.45 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC--------CeeeeEeecccccc-ccccccccc
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG--------TTLGIVRVEGVLPA-QAKLFDTPG 377 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg--------tT~~~i~~~~~l~~-~~~liDtpG 377 (413)
++++ +|.||.||||||++|+|.++|+.|. .+..+.+|.+|. +.+..+.-.. .+. ..-.|-+-+
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~lnVSykpqkispK~~~tvR~ll~~kI-r~ay~~pqF~~dv 440 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLNVSYKPQKISPKREGTVRQLLHTKI-RDAYMHPQFVNDV 440 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccceeccccccCccccchHHHHHHHHh-HhhhcCHHHHHhh
Confidence 3444 9999999999999999999998883 445666665543 2211110000 000 000011111
Q ss_pred c-----c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 378 L-----L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 378 l-----~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+ . .-++-...|||||+||++++-.+ -...|.+++|
T Consensus 441 mkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 441 MKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred hhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 1 1 13577889999999999999888 4588888876
No 455
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.93 E-value=2.7e-05 Score=81.14 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=58.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
..++..+|++++|+|+.+.....+..+...+.. .++ |+|+|+||+||.... ..........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~----------~~~-----piIiV~NK~Dl~~~~----~~~~~~~~i~ 348 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE----------AGR-----ALVLAFNKWDLVDED----RRYYLEREID 348 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEECcccCChh----HHHHHHHHHH
Confidence 345678999999999987643333333333221 133 899999999997531 1111111111
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.........++.+||++|.|++++++.+.+..
T Consensus 349 ~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 349 RELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred HhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112211235688999999999999999986654
No 456
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.2e-05 Score=80.32 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=50.2
Q ss_pred ceEEEeEEEeecCc-chhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 279 TKLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
..|.+....-.|+. ..++..+....+.+..+.++|++|+||||+++.|.+.+.+.+|.+..++..+..++.
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq 332 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHH
Confidence 34666666666654 457777733333444566699999999999999999999999987765555544443
No 457
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.92 E-value=3.8e-05 Score=69.51 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRL 388 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~L 388 (413)
.+++|+||+|||+++.+|.-...-.+-..... ..+........+|.+...+.+.+ .....+ ........-|
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~f--~~~~~~------~~~~~~~~~L 95 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG-SLLFLAGGGVKAGINSASVEITF--DKSYFL------VLQGKVEQIL 95 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCcccccccCc-chhhhcccccCCCCceEEEEEEE--ECceEE------ecCCcCcccC
Confidence 45699999999999999874431100000000 00000011122344434444322 111111 1122333349
Q ss_pred CHHHHHHHHHhhhh------cCCccccCCCC
Q 015085 389 TREEQKLVNINKEL------KPRTYRIKVSL 413 (413)
Q Consensus 389 S~ge~q~v~i~r~l------~~~~~~l~~~~ 413 (413)
|+||+|++.+++++ .++.+.+|+|.
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~ 126 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEID 126 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 99999999999987 57888888874
No 458
>PTZ00258 GTP-binding protein; Provisional
Probab=97.92 E-value=1e-05 Score=81.55 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc------------------cc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL------------------PA 368 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l------------------~~ 368 (413)
..+.+||.+|||||||||+|.+.. ..++++|+||++...-.... +.
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~----------------~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQ----------------VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCc----------------ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 367889999999999999998432 34567788887654322111 12
Q ss_pred cccccccccccC
Q 015085 369 QAKLFDTPGLLH 380 (413)
Q Consensus 369 ~~~liDtpGl~~ 380 (413)
...++||||+..
T Consensus 86 qi~lvDtpGLv~ 97 (390)
T PTZ00258 86 QLDITDIAGLVK 97 (390)
T ss_pred CeEEEECCCcCc
Confidence 368999999985
No 459
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.91 E-value=4.2e-05 Score=66.42 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|++++|+|+.+... ...+...+.. .+ .|+++|+||+|+..... +..+.....+..+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~----------~~-----~~~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~ 131 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE----------LG-----LPVVVALNMIDEAEKRG----IKIDLDKLSELLG 131 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH----------cC-----CCEEEEEehhhhccccc----chhhHHHHHHhhC
Confidence 57899999999987432 1122222211 13 38999999999975421 2222222333333
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+|+.++.|++++++.+.++
T Consensus 132 ----~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 132 ----VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ----CCeEEEEccCCCCHHHHHHHHHHH
Confidence 368999999999999998887543
No 460
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.90 E-value=2.2e-05 Score=79.57 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
.++.-.+|++..++++|+|+||+|++......+..+.+.+.. + +|+++|+||+||..+... ..
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~-----------~-----~~~i~v~NK~DL~~~~~~-~~ 344 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPK-----------K-----KPIIVVLNKADLVSKIEL-ES 344 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhccc-----------C-----CCEEEEEechhccccccc-ch
Confidence 344455889999999999999999998655555555552221 2 389999999999865321 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. .+ . .-..++.+|++++.|++.|.+.|.++..
T Consensus 345 ~-~~-------~---~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 345 E-KL-------A---NGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred h-hc-------c---CCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 1 11 0 1124889999999999999999966543
No 461
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.90 E-value=4.1e-05 Score=79.53 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCc-----hHHHHHHhhhhHhHh-----HHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSF-----PRKVAKMVSDTAEEN-----ERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~-----~~~l~~~l~~~~~~~-----~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+...+.+.++.+++||||||+++..... ...+.+.|..+.... ...+ .+ +|+|+|+||+|+...
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l-~~-----kP~IVVlNKiDL~da 299 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL-AE-----RPRLVVLNKIDVPDA 299 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh-cC-----CCEEEEEECccchhh
Confidence 4455666778899999999998643111 112222222110000 0000 12 389999999998633
Q ss_pred CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+.++++..+...+ ..|+.+||+++.|+++|+..|.++.
T Consensus 300 ----~el~e~l~~~l~~~g----~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 300 ----RELAEFVRPELEARG----WPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----HHHHHHHHHHHHHcC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 223334443343333 3699999999999999988886554
No 462
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.90 E-value=1.5e-05 Score=73.17 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=37.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||+|+|+|...+..|... .. ...+|.....+.........++||||+..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~----------~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~ 64 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAP----------TG-VVETTMKRTPYPHPKFPNVTLWDLPGIGS 64 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccc----------cC-ccccccCceeeecCCCCCceEEeCCCCCc
Confidence 4778999999999999999987655545211 11 11223222222111123578999999863
No 463
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=97.88 E-value=1e-05 Score=90.26 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=86.7
Q ss_pred eEEEeEEEeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--------c
Q 015085 280 KLHFVSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--------E 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--------~ 349 (413)
.++.-..++.|+... .++.+ ++..++|++.. .|+|||||||+||+|.|...+++|++......+..-+ .
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~l-s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGL-SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhhhhcce-EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 455555666777665 66666 66677778777 9999999999999999999999997442211111000 0
Q ss_pred cCCCC--------CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 350 APVPG--------TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 350 s~~pg--------tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..-|. |.++.+.+...+.+ ..++++..|+. ..++.+..+|||.++|+..+-++ .|...-|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 00111 11222222111111 13567778886 45677999999999999988888 6788888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|.
T Consensus 723 DEPs 726 (885)
T KOG0059|consen 723 DEPS 726 (885)
T ss_pred cCCC
Confidence 8873
No 464
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.88 E-value=7.8e-05 Score=67.85 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
-..+++|+|++.++...+.++.+++... +. |+++|+||+|.++... ...-+....+..+..
T Consensus 107 L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i-----~~~vv~tK~DKi~~~~----~~k~l~~v~~~l~~~ 167 (200)
T COG0218 107 LKGVVLLIDARHPPKDLDREMIEFLLEL----------GI-----PVIVVLTKADKLKKSE----RNKQLNKVAEELKKP 167 (200)
T ss_pred heEEEEEEECCCCCcHHHHHHHHHHHHc----------CC-----CeEEEEEccccCChhH----HHHHHHHHHHHhcCC
Confidence 4678999999999888888899988764 43 8999999999997532 211122222222221
Q ss_pred ccce--EEEeEEEeecCcchhccchhhhc
Q 015085 277 KITK--LHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 277 ~~~~--V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... +++.|+.++.|+++|...|.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHh
Confidence 2222 88999999999999988885543
No 465
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.88 E-value=1.2e-05 Score=71.03 Aligned_cols=56 Identities=38% Similarity=0.296 Sum_probs=35.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~-~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|+|.+... .++..+++|.+....... -. ....++||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~----------------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP----------------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc----------------cccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 578899999999999999985321 223344555432111101 11 256799999984
No 466
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.87 E-value=1.1e-05 Score=80.62 Aligned_cols=57 Identities=32% Similarity=0.349 Sum_probs=39.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc------------------ccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL------------------PAQ 369 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l------------------~~~ 369 (413)
.+.+||.+|||||||||+|++.. ..++.+|+||++...-.... +..
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~----------------~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG----------------AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------CeecccccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 47779999999999999999532 23456788887653211111 123
Q ss_pred ccccccccccC
Q 015085 370 AKLFDTPGLLH 380 (413)
Q Consensus 370 ~~liDtpGl~~ 380 (413)
..++|+||+..
T Consensus 68 i~lvD~pGL~~ 78 (364)
T PRK09601 68 IEFVDIAGLVK 78 (364)
T ss_pred EEEEECCCCCC
Confidence 68999999985
No 467
>PRK00089 era GTPase Era; Reviewed
Probab=97.87 E-value=1.3e-05 Score=78.00 Aligned_cols=59 Identities=39% Similarity=0.410 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
|.+.++|.+|||||||+|.|+|.. ...+++.++||+..+....... ....++||||+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~---------------~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK---------------ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK 65 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc---------------eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC
Confidence 567779999999999999999532 1234566777776543211112 3578999999864
No 468
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.86 E-value=7.9e-05 Score=65.49 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=54.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....+|++++|+|+.+..........+++.. .++ |+++|+||+|+... ....+...+......
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~----------~~~-----p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~ 132 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA----------ANV-----PFIVALNKIDKPNA--NPERVKNELSELGLQ 132 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHH----------cCC-----CEEEEEEceecccc--cHHHHHHHHHHhhcc
Confidence 4467899999999987542222222222221 133 89999999998643 122222222211110
Q ss_pred c--CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 D--GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~--g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
. .......++.+|+.++.|+++|++.|.++
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred ccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 0 01112468999999999999999888554
No 469
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.82 E-value=0.00011 Score=62.83 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=56.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+........+...... .+ .|+++|+||+|+... .....+.....
T Consensus 70 ~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~----------~~-----~~~ivv~nK~D~~~~----~~~~~~~~~~~ 130 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRE----------RG-----KPVLLVLNKIDLLPE----EEEEELLELRL 130 (163)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh----------cC-----CeEEEEEEccccCCh----hhHHHHHHHHH
Confidence 345567899999999998654433331221111 12 389999999999854 23333321111
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
..........++.+|+.++.|+.++++.+.
T Consensus 131 ~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 131 LILLLLLGLPVIAVSALTGEGIDELREALI 160 (163)
T ss_pred hhcccccCCceEEEeeeccCCHHHHHHHHH
Confidence 111111235688999999999999888774
No 470
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.82 E-value=6.2e-05 Score=66.27 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=57.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..++++++|+|+.+.. + ......++....... ...+ .|+++|+||+|+... .....+..++....+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~-~-~~~~~~~~~~~~~~~---~~~~-----~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~ 137 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRE-R-FEESKSALEKVLRNE---ALEG-----VPLLILANKQDLPDA-LSVEEIKEVFQDKAE 137 (167)
T ss_pred HHhCCCCEEEEEEECchHH-H-HHHHHHHHHHHHhCh---hhcC-----CCEEEEEEccccccC-CCHHHHHHHhccccc
Confidence 4467889999999998743 2 222222322211000 0012 389999999998654 233445555543322
Q ss_pred HcCCCccceEEEeEEEeecCcchhccch
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
..+. ....++.+||++|.|++++++.|
T Consensus 138 ~~~~-~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 138 EIGR-RDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred cccC-CceEEEEeeCCCCcCHHHHHHHH
Confidence 2221 12368999999999999998876
No 471
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.80 E-value=7.6e-05 Score=72.78 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=64.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
++.++.+.++++.+++||||+...+.....+-.+.+..........+ .+ +|.++|+||+|++.. .+.++.+
T Consensus 227 LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L-~~-----K~~ivv~NKiD~~~~---~e~~~~~ 297 (369)
T COG0536 227 LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL-AE-----KPRIVVLNKIDLPLD---EEELEEL 297 (369)
T ss_pred ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh-cc-----CceEEEEeccCCCcC---HHHHHHH
Confidence 55566777888999999999987654322221222221111111111 23 389999999996533 3455555
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+...+..+.. ....+||.++.|++.|+..+.++.
T Consensus 298 ~~~l~~~~~~~---~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 298 KKALAEALGWE---VFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred HHHHHHhcCCC---cceeeehhcccCHHHHHHHHHHHH
Confidence 55555444421 122299999999999998886554
No 472
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.80 E-value=8.7e-05 Score=65.48 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-CCCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-SSLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~~~~~~~l~~~~~~~~ 270 (413)
..++.+|.+++|+|+.+.. ++ ..+..+...... ..........|+++|+||+|+.. .....+....|.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~-~~-~~~~~~~~~~~~-----~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--- 137 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPK-SF-ESLDSWRDEFLI-----QASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ--- 137 (172)
T ss_pred HHhcCCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hcCccCCCCceEEEEEECcccccccccCHHHHHHHHH---
Confidence 4567789999999998743 21 222222211100 00000011248999999999984 3333444444432
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ...++.+|++++.|++++++.+.+..
T Consensus 138 -~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 138 -SNG---NIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -HcC---CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 332 24689999999999999998885543
No 473
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.79 E-value=6e-05 Score=82.42 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=60.7
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...+++.+|++++|+|+.+.....+..+.+.+.. .++ |+++|+||+||.+.. ..+.+.+..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~----------~~~-----piIiV~NK~DL~~~~----~~~~~~~~~ 586 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD----------AGR-----ALVLVFNKWDLMDEF----RRQRLERLW 586 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEEchhcCChh----HHHHHHHHH
Confidence 3456788999999999987644333333333221 133 899999999997531 111221111
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
...........++.+||++|.|+++|++.+.+...
T Consensus 587 ~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 587 KTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred HHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111123457889999999999999998866543
No 474
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.79 E-value=0.00016 Score=67.44 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=52.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC----CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh---HHH
Q 015085 190 LMSASGARSVVLMVVDAADFDG----SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP---TRF 262 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~----s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~---~~l 262 (413)
....+..+|++++|||+.+... .......+.+... . ..+ .+++++|+||+|+....... ..+
T Consensus 94 ~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~------~~~----~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (219)
T cd01883 94 MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-R------TLG----VKQLIVAVNKMDDVTVNWSEERYDEI 162 (219)
T ss_pred HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-H------HcC----CCeEEEEEEccccccccccHHHHHHH
Confidence 3455677999999999987421 1111111111100 0 012 13799999999997431111 233
Q ss_pred HHHHHHHHHHcCCC-ccceEEEeEEEeecCcch
Q 015085 263 EHWVRQRAREDGIS-KITKLHFVSAVKNWGLKS 294 (413)
Q Consensus 263 ~~~~~~~~~~~g~~-~~~~V~~vSa~~~~Gi~~ 294 (413)
.+.++..++..+.. .-..++.+||.+|.|+++
T Consensus 163 ~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 163 KKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 33333344444431 124689999999999874
No 475
>PRK04213 GTP-binding protein; Provisional
Probab=97.78 E-value=2.8e-05 Score=71.08 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
..+.++|.+|||||||+|.|.+.. ..++..||+|.....+. .. ...++||||+.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~----------------~~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK----------------VRVGKRPGVTRKPNHYD--WG-DFILTDLPGFG 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCceeeCceEEe--ec-ceEEEeCCccc
Confidence 367889999999999999998532 12335578887665442 22 57899999973
No 476
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.78 E-value=3.8e-05 Score=69.06 Aligned_cols=58 Identities=29% Similarity=0.347 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++.++|.+|+|||||+|.|.+... ...++..+|+|.+...+. .+....++||||+..
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~~~liDtpG~~~ 76 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKK--------------LARTSKTPGRTQLINFFE--VNDGFRLVDLPGYGY 76 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCcceEEEEEE--eCCcEEEEeCCCCcc
Confidence 3678899999999999999995320 112345677887654442 234678999999753
No 477
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.78 E-value=3.7e-05 Score=69.75 Aligned_cols=57 Identities=30% Similarity=0.396 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|.+|+|||||+|.|++... ....++.+|+|.+..... ......++||||+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~ 81 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKN--------------LARTSKTPGRTQLINFFE--VNDKLRLVDLPGYG 81 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCceeEEEEEe--cCCeEEEeCCCCCC
Confidence 3688899999999999999996310 112244567776654332 23467899999974
No 478
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.78 E-value=0.00015 Score=67.06 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=54.5
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-hHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~-~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+........+..++... +. +++|+|+||+|+...... ...+..-++.+
T Consensus 95 ~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~----------~~----~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 95 VTGASTADLAILLVDARKGVLEQTRRHSYILSLL----------GI----RHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc----------CC----CcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 3456789999999999875433333333333211 21 357889999999743110 11222223334
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
++..+. ....++.+||+++.|+.+...
T Consensus 161 ~~~~~~-~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 161 AAKLGI-EDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHHcCC-CCceEEEEeCCCCCCCccCCC
Confidence 444443 123589999999999887654
No 479
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.77 E-value=4.7e-05 Score=76.28 Aligned_cols=87 Identities=32% Similarity=0.428 Sum_probs=54.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+...+..+|+|++|+|++++..... ..+.+++... +. ...|+++|+||+|+.+. ..+..+
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----------~~--~~~piIlV~NK~Dl~~~----~~v~~~--- 322 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEEL----------GA--EDIPQLLVYNKIDLLDE----PRIERL--- 322 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----------cc--CCCCEEEEEEeecCCCh----HhHHHH---
Confidence 4445778999999999988643211 1222333321 10 12389999999999743 222211
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. + ...++.+||+++.|+++|++.|.+
T Consensus 323 --~~-~---~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 323 --EE-G---YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred --Hh-C---CCCEEEEEccCCCCHHHHHHHHHh
Confidence 11 1 135789999999999999988743
No 480
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.77 E-value=0.00013 Score=70.38 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=67.0
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+.....++-|+-.+.+.++++..++||||+..+..- -+..+..+..+. + .|..+. ..+|.++|+||+|+...
T Consensus 255 I~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL-e----~yek~L--~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL-E----LYEKGL--ADRPALIVANKIDLPEA 327 (366)
T ss_pred cccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHH-H----HHhhhh--ccCceEEEEeccCchhH
Confidence 344455566777788889999999999999876221 122222222211 1 111121 22489999999998632
Q ss_pred CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
-+.++.++.+... -..|+.+||+.+.|..+|++.+.
T Consensus 328 ------e~~~l~~L~~~lq---~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 328 ------EKNLLSSLAKRLQ---NPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred ------HHHHHHHHHHHcC---CCcEEEeeeccccchHHHHHHHh
Confidence 1222333333332 13589999999999999998874
No 481
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.77 E-value=5.3e-05 Score=72.78 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=70.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC---------
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS--------- 258 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~--------- 258 (413)
+..+.++..||+|+.|+|+.+.-..+.+.+++.+..+ .. .|-|+|+||+|.+.....
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y---------s~-----ips~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY---------SK-----IPSILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH---------hc-----CCceeeccchhcchhhhHHhhhHHhcc
Confidence 4556778889999999999975445567777777654 11 288999999998754210
Q ss_pred hHH----HHHHHHHHH---------HHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 259 PTR----FEHWVRQRA---------REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 259 ~~~----l~~~~~~~~---------~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
... ..+|...+. ...|+..|..||++||.+|.|+++|.+.|...+..+
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 001 112222111 112455678899999999999999999987666543
No 482
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.77 E-value=3e-05 Score=67.00 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=39.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
.+.++|.+|+|||||+|+|.+.. .......+++|.+.........+ ...++||||+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 61 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD---------------RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRE 61 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc---------------eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCC
Confidence 46779999999999999999532 11223456777665443222222 467999999864
No 483
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.77 E-value=0.00011 Score=64.83 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=50.9
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
+|++++|+|+.+...........++.... ....+ .|+++|+||+|+.... .+.. .....+.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~-----~~~~~-----~pvilv~NK~Dl~~~~----~~~~-~~~~~~~---- 140 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIK-----PLFKN-----KPVIVVLNKIDLLTFE----DLSE-IEEEEEL---- 140 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHH-----hhcCc-----CCeEEEEEccccCchh----hHHH-HHHhhhh----
Confidence 58899999998754311122222222110 00012 3899999999997542 1211 1122221
Q ss_pred ccceEEEeEEEeecCcchhccchhh
Q 015085 277 KITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 277 ~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
....++.+||+++.|++++++.+..
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 141 EGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred ccCceEEEEecccCCHHHHHHHHHH
Confidence 1246889999999999999988744
No 484
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=97.77 E-value=2.6e-05 Score=79.75 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCC--CCCeeeeEeecccccc--
Q 015085 295 LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 295 Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~--pgtT~~~i~~~~~l~~-- 368 (413)
++..+ .+..+.|. ..++||||||||+|+++|.|+-+...|....- ...+-++++-+. -||-+|.+-++-..+.
T Consensus 497 vv~~L-tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 497 LVPKL-TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred eecce-eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 44444 44445554 45599999999999999999987766642211 111223333322 3455565544321100
Q ss_pred --c------ccccccc----------cccCCCCCCCCCCHHHHHHHHHhhhh
Q 015085 369 --Q------AKLFDTP----------GLLHPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 369 --~------~~liDtp----------Gl~~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
+ ..+++.. |+..-...-+.|||||+||+.+||.+
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~ 627 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF 627 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH
Confidence 0 1122222 22211233578999999999999988
No 485
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.76 E-value=4.4e-06 Score=74.20 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------ccccCCCCCeeeeEeecc---cccc-
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEAPVPGTTLGIVRVEG---VLPA- 368 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s~~pgtT~~~i~~~~---~l~~- 368 (413)
.|+++ +|||||+|||||+-.|+|+. +.+|++...+..+.+ +.....|-...-...+.. ....
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~ 102 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTR 102 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHH
Confidence 45554 49999999999999999987 556754422222111 111111111100000000 0000
Q ss_pred ---ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 369 ---QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 369 ---~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
...+-+.-++. +..+..+.|||||.|||.++-..
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEE
Confidence 01233344554 34688999999999999877654
No 486
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.76 E-value=4.2e-05 Score=83.84 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=47.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~~~~~~ 386 (413)
.+.++|.+|||||||+|.|+|.. ..++++||+|.+.....+... ....++||||+........
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~----------------~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~ 68 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS 68 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccc
Confidence 57779999999999999998532 134678999987654433232 2578999999975433323
Q ss_pred CCCHHHH
Q 015085 387 RLTREEQ 393 (413)
Q Consensus 387 ~LS~ge~ 393 (413)
..|.+|+
T Consensus 69 ~~s~~E~ 75 (772)
T PRK09554 69 QTSLDEQ 75 (772)
T ss_pred cccHHHH
Confidence 3344553
No 487
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.75 E-value=2.7e-05 Score=72.45 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
+++++|.+|+||||++|+|+|....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f 26 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVF 26 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-S
T ss_pred EEEEECCCCCCHHHHHHHHhcccce
Confidence 4778999999999999999976643
No 488
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.75 E-value=3.7e-05 Score=74.99 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
...+.++|.+|+||||++|+|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467889999999999999999654
No 489
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.75 E-value=0.00013 Score=65.51 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...+.+++|+|+..........+.+++... ++ |+++|+||+|+..... .......++..++..+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~----------~~-----pviiv~nK~D~~~~~~-~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRER----------GI-----PVLIVLTKADKLKKSE-LNKQLKKIKKALKKDA 162 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHc----------CC-----CEEEEEECcccCCHHH-HHHHHHHHHHHHhhcc
Confidence 346899999999864433333444444321 33 8999999999974321 1112222333333332
Q ss_pred CCccceEEEeEEEeecCcc
Q 015085 275 ISKITKLHFVSAVKNWGLK 293 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~ 293 (413)
....++.+||++|+|++
T Consensus 163 --~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 --DDPSVQLFSSLKKTGID 179 (179)
T ss_pred --CCCceEEEECCCCCCCC
Confidence 11379999999999874
No 490
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.74 E-value=4e-05 Score=67.10 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=52.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch---HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFP---RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~---~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
..+..++++++|+|+.+.. ++. ..+..++... ...+ .|+++|+||+|+.... ....+...+
T Consensus 62 ~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~-------~~~~-----~piiiv~nK~Dl~~~~-~~~~i~~~~-- 125 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRD-RLGTAKEELHAMLEEE-------ELKG-----AVLLVFANKQDMPGAL-SEAEISEKL-- 125 (158)
T ss_pred HHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhch-------hhcC-----CcEEEEEeCCCCCCCC-CHHHHHHHh--
Confidence 4567899999999998742 111 1122222110 0012 3999999999986432 122221111
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccch
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
...........++.+||+++.|++++++.+
T Consensus 126 -~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 126 -GLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred -CccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 000000011358999999999999998876
No 491
>PRK04213 GTP-binding protein; Provisional
Probab=97.74 E-value=0.00014 Score=66.37 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=53.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCc-----------hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 193 ASGARSVVLMVVDAADFDGSF-----------PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~-----------~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
.+..+++|++|+|+.++.... +..+.+.+.. .+ .|+++|+||+|+.... .+.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~-----~p~iiv~NK~Dl~~~~--~~~ 149 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----------LG-----IPPIVAVNKMDKIKNR--DEV 149 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----------cC-----CCeEEEEECccccCcH--HHH
Confidence 455678999999997653210 1122222221 12 3899999999986542 122
Q ss_pred HHHHHHHHHHHcCCCcc-----ceEEEeEEEeecCcchhccchhhhc
Q 015085 262 FEHWVRQRAREDGISKI-----TKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~-----~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++ .+..+.... ..++.+||++| |++++++.|.+..
T Consensus 150 ~~~~----~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 150 LDEI----AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHHH----HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 2333 222332100 24789999999 9999998886543
No 492
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.72 E-value=0.00013 Score=78.21 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=62.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|||+.+..+....+...++... +. +.+++|+||+|+.++. ....+.+-++..
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l----------gi----~~iIVVlNKiDlv~~~-~~~~v~~ei~~~ 132 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT----------GN----PMLTVALTKADRVDEA-RIAEVRRQVKAV 132 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEECCccCCHH-HHHHHHHHHHHH
Confidence 34556778999999999876554444444444322 22 2468999999997431 111122222233
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+...++ ....++.+||.+|.|+++|++.|.++..
T Consensus 133 l~~~~~-~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 133 LREYGF-AEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHhcCC-CCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 333332 1246899999999999999998865543
No 493
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.72 E-value=0.00013 Score=77.88 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=60.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|||+.+..+....+...++... +. +++++|+||+|+.+.. ..+...+.++.+
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l----------gi----~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~ 131 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL----------GI----PHTIVVITKADRVNEE-EIKRTEMFMKQI 131 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 34456779999999999885443222223332211 33 2399999999997531 111233344444
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
++..+......++.+||++|.|++++.+.+.++
T Consensus 132 l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 444432212468999999999999888777543
No 494
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.72 E-value=4.6e-05 Score=66.38 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=35.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHc--cCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK--SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g--~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
++.++|.+|+|||||+|.|.+ .... .++.+++|.....+ .......++||||+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~----------------~~~~~~~t~~~~~~--~~~~~~~~~D~~g~~ 56 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLAR----------------TSKTPGKTQLINFF--NVNDKFRLVDLPGYG 56 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceee----------------ecCCCCcceeEEEE--EccCeEEEecCCCcc
Confidence 367899999999999999993 2221 22334555443322 233467889999974
No 495
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.72 E-value=0.00011 Score=67.24 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-CCCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-SSLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~~~~~~~l~~~~~~~~ 270 (413)
..+..++.+++|+|+.+.. ++ ..+..++... ... ..+.. ....|+++|+||+|+.. .....+.+.+|.
T Consensus 69 ~~~~~a~~~ilv~D~t~~~-s~-~~~~~~~~~i-~~~-~~~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 137 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPS-TF-EAVLKWKADL-DSK-VTLPN---GEPIPCLLLANKCDLKKRLAKDGEQMDQFC---- 137 (201)
T ss_pred HHhCCCCEEEEEEECCCHH-HH-HHHHHHHHHH-HHh-hcccC---CCCCcEEEEEECCCcccccccCHHHHHHHH----
Confidence 3467889999999998742 22 2233333211 000 00000 11248999999999974 233344455544
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ +..++.+||+++.|++++++.|.+.
T Consensus 138 ~~~~---~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 138 KENG---FIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred HHcC---CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333 2468899999999999999888543
No 496
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.72 E-value=0.00011 Score=76.04 Aligned_cols=100 Identities=10% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHhhhcCCCcEEEEEEeCCCC-CCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~-~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.+...+..+|.+++|||+.+. .+....+...++... +. +++|+|+||+|+.+.... ....+.++
T Consensus 133 ~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l----------gi----~~iIVvlNKiDlv~~~~~-~~~~~ei~ 197 (460)
T PTZ00327 133 TMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM----------KL----KHIIILQNKIDLVKEAQA-QDQYEEIR 197 (460)
T ss_pred HHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc----------CC----CcEEEEEecccccCHHHH-HHHHHHHH
Confidence 344556678999999999874 332222222222211 22 378999999999753211 11112222
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+++.... ....++.+||.+|.|++.|++.|.+...
T Consensus 198 ~~l~~~~~-~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 198 NFVKGTIA-DNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHhhcc-CCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 23322111 2357999999999999999999964443
No 497
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.71 E-value=4.7e-05 Score=78.56 Aligned_cols=59 Identities=34% Similarity=0.404 Sum_probs=43.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
-++.++|.+|||||||+|.|++.. ...++.+||||++.+.....+++ ...++||||+..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~---------------~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQD---------------RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC---------------CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 367889999999999999999532 12245679999987654333332 357999999853
No 498
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.71 E-value=4.3e-05 Score=75.97 Aligned_cols=57 Identities=33% Similarity=0.316 Sum_probs=41.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-c-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-P-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~-~~~~liDtpGl~~ 380 (413)
+|.+||.+|||||||||+|++.. ..++.+|+||+....-.... + ....++|+||+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~----------------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK----------------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC----------------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 68999999999999999998421 23466788887664432222 1 2478999999863
No 499
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.71 E-value=4e-05 Score=73.54 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.9
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
++..|+.. .++....||+||+||+.++++|. ++.|.+|+|+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPt 200 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPT 200 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCC
Confidence 34456653 47888999999999999999995 3689999884
No 500
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.71 E-value=6e-05 Score=71.72 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.1
Q ss_pred CCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 383 QITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+....||+|++|++.+++++. ++.+.+|+|.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt 187 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVD 187 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccc
Confidence 334789999999999999984 7888888874
Done!