Query 015085
Match_columns 413
No_of_seqs 496 out of 3179
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ec1_A YQEH GTPase; atnos1, at 100.0 1.9E-40 6.5E-45 331.8 9.9 251 82-411 5-255 (369)
2 3h2y_A GTPase family protein; 100.0 7.5E-40 2.6E-44 327.2 10.1 250 82-411 5-254 (368)
3 1puj_A YLQF, conserved hypothe 99.8 1.1E-18 3.7E-23 167.9 12.7 160 177-381 6-178 (282)
4 3cnl_A YLQF, putative uncharac 99.7 6.4E-18 2.2E-22 160.8 7.0 145 188-381 13-157 (262)
5 2rcn_A Probable GTPase ENGC; Y 99.7 1.1E-16 3.8E-21 158.2 11.1 187 191-404 125-330 (358)
6 1t9h_A YLOQ, probable GTPase E 99.7 6.4E-17 2.2E-21 157.0 8.7 177 173-392 69-246 (307)
7 2yv5_A YJEQ protein; hydrolase 99.7 3.8E-16 1.3E-20 151.6 11.5 152 192-379 75-227 (302)
8 1mky_A Probable GTP-binding pr 99.6 9E-16 3.1E-20 156.4 9.8 158 182-379 67-239 (439)
9 2hjg_A GTP-binding protein ENG 99.6 4.6E-16 1.6E-20 158.4 6.0 159 182-381 68-236 (436)
10 1u0l_A Probable GTPase ENGC; p 99.6 2.8E-15 9.6E-20 145.4 10.1 122 192-338 80-201 (301)
11 4dcu_A GTP-binding protein ENG 99.5 1.6E-14 5.4E-19 147.9 7.8 159 182-381 88-256 (456)
12 3rlf_A Maltose/maltodextrin im 99.4 1.4E-13 4.7E-18 137.1 8.3 132 281-413 4-161 (381)
13 3fvq_A Fe(3+) IONS import ATP- 99.4 1.9E-13 6.4E-18 135.2 7.6 132 281-413 5-166 (359)
14 1z47_A CYSA, putative ABC-tran 99.4 5.2E-13 1.8E-17 132.0 8.5 133 280-413 14-173 (355)
15 2yyz_A Sugar ABC transporter, 99.4 5E-13 1.7E-17 132.3 8.3 131 282-413 5-161 (359)
16 4g1u_C Hemin import ATP-bindin 99.4 3.4E-13 1.2E-17 128.4 6.4 132 281-413 12-175 (266)
17 2it1_A 362AA long hypothetical 99.4 5.3E-13 1.8E-17 132.3 7.8 131 282-413 5-161 (362)
18 2pcj_A ABC transporter, lipopr 99.4 2.9E-13 9.8E-18 125.7 4.6 130 283-413 7-168 (224)
19 1g29_1 MALK, maltose transport 99.4 7.1E-13 2.4E-17 131.9 7.7 131 282-413 5-167 (372)
20 1v43_A Sugar-binding transport 99.4 5.9E-13 2E-17 132.4 6.8 132 281-413 12-169 (372)
21 3d31_A Sulfate/molybdate ABC t 99.3 2.1E-13 7.2E-18 134.5 3.0 128 284-413 5-155 (348)
22 3tui_C Methionine import ATP-b 99.3 6.1E-13 2.1E-17 131.7 5.5 120 293-413 41-191 (366)
23 1oxx_K GLCV, glucose, ABC tran 99.3 8.7E-13 3E-17 130.4 6.5 130 283-413 6-168 (353)
24 3gfo_A Cobalt import ATP-bindi 99.3 4.8E-13 1.7E-17 127.9 4.2 131 282-413 9-171 (275)
25 1g6h_A High-affinity branched- 99.3 5.5E-13 1.9E-17 126.3 4.1 132 281-413 8-181 (257)
26 2nq2_C Hypothetical ABC transp 99.3 6.4E-13 2.2E-17 125.6 4.5 129 283-413 7-156 (253)
27 1ji0_A ABC transporter; ATP bi 99.3 7.9E-13 2.7E-17 124.0 5.0 131 282-413 8-167 (240)
28 1sgw_A Putative ABC transporte 99.3 4.5E-13 1.5E-17 123.5 3.1 131 281-413 11-161 (214)
29 3tif_A Uncharacterized ABC tra 99.3 6E-13 2E-17 124.4 3.7 119 294-413 19-173 (235)
30 2ihy_A ABC transporter, ATP-bi 99.3 5.6E-13 1.9E-17 127.8 3.0 132 281-413 22-189 (279)
31 1b0u_A Histidine permease; ABC 99.3 5.9E-13 2E-17 126.5 2.8 132 281-413 7-181 (262)
32 2olj_A Amino acid ABC transpor 99.3 1.8E-12 6.2E-17 123.1 5.7 132 281-413 25-187 (263)
33 1vpl_A ABC transporter, ATP-bi 99.3 2E-12 6.9E-17 122.4 5.9 132 281-413 16-174 (256)
34 2ixe_A Antigen peptide transpo 99.3 2E-12 6.7E-17 123.5 5.4 132 281-413 17-184 (271)
35 2onk_A Molybdate/tungstate ABC 99.3 2.6E-12 8.9E-17 120.4 5.2 123 287-413 8-154 (240)
36 1mv5_A LMRA, multidrug resista 99.3 1.4E-11 4.7E-16 115.7 10.1 128 285-413 6-167 (243)
37 2ff7_A Alpha-hemolysin translo 99.3 1.5E-12 5.2E-17 122.6 3.4 133 280-413 7-173 (247)
38 2pze_A Cystic fibrosis transme 99.3 2.6E-12 8.8E-17 119.6 4.6 131 281-413 7-158 (229)
39 2yz2_A Putative ABC transporte 99.2 1.8E-12 6.2E-17 123.4 3.4 120 293-413 20-166 (266)
40 2cbz_A Multidrug resistance-as 99.2 2.4E-12 8.3E-17 120.4 4.0 129 283-413 6-155 (237)
41 2d2e_A SUFC protein; ABC-ATPas 99.2 3.5E-12 1.2E-16 120.3 2.3 129 284-413 7-171 (250)
42 3gd7_A Fusion complex of cysti 99.2 3.9E-12 1.3E-16 127.2 2.2 132 280-413 19-183 (390)
43 2zu0_C Probable ATP-dependent 99.2 9.7E-12 3.3E-16 118.4 4.7 132 281-413 21-192 (267)
44 2pjz_A Hypothetical protein ST 99.2 5.6E-12 1.9E-16 119.8 3.0 118 293-413 18-156 (263)
45 3nh6_A ATP-binding cassette SU 99.2 1.2E-11 4.1E-16 119.9 4.8 132 281-413 54-218 (306)
46 2qi9_C Vitamin B12 import ATP- 99.1 1.2E-11 4.1E-16 116.5 3.6 118 294-413 14-161 (249)
47 2ghi_A Transport protein; mult 99.1 2.3E-11 7.8E-16 115.4 2.8 131 281-413 18-183 (260)
48 3ozx_A RNAse L inhibitor; ATP 99.1 7.7E-11 2.6E-15 122.8 4.9 113 301-413 288-413 (538)
49 2bbs_A Cystic fibrosis transme 99.0 2.6E-11 8.8E-16 116.8 0.9 118 293-413 51-187 (290)
50 3b5x_A Lipid A export ATP-bind 99.0 1.6E-10 5.4E-15 121.7 4.9 132 281-413 342-508 (582)
51 3bk7_A ABC transporter ATP-bin 99.0 2.2E-10 7.7E-15 120.9 5.9 124 288-413 99-256 (607)
52 1yqt_A RNAse L inhibitor; ATP- 99.0 2.8E-10 9.7E-15 118.6 6.3 125 287-413 28-186 (538)
53 3qf4_A ABC transporter, ATP-bi 99.0 1.4E-10 4.7E-15 122.3 3.6 133 280-413 341-507 (587)
54 3ozx_A RNAse L inhibitor; ATP 99.0 2.3E-10 7.8E-15 119.2 5.0 110 304-413 22-166 (538)
55 4a82_A Cystic fibrosis transme 99.0 2E-10 6.9E-15 120.8 3.8 133 280-413 339-505 (578)
56 3qf4_B Uncharacterized ABC tra 99.0 2.2E-10 7.6E-15 121.0 3.9 133 280-413 354-519 (598)
57 3bk7_A ABC transporter ATP-bin 98.9 3.5E-10 1.2E-14 119.4 4.8 112 301-413 376-499 (607)
58 3b60_A Lipid A export ATP-bind 98.9 5E-10 1.7E-14 117.9 5.4 132 281-413 342-508 (582)
59 2yl4_A ATP-binding cassette SU 98.9 2.4E-10 8.3E-15 120.6 2.7 132 281-413 342-511 (595)
60 1yqt_A RNAse L inhibitor; ATP- 98.9 6.1E-10 2.1E-14 116.1 4.4 112 301-413 306-429 (538)
61 3j16_B RLI1P; ribosome recycli 98.9 1E-09 3.5E-14 115.8 5.4 110 304-413 100-249 (608)
62 3j16_B RLI1P; ribosome recycli 98.8 4.8E-09 1.6E-13 110.7 9.2 105 308-413 379-495 (608)
63 3sop_A Neuronal-specific septi 98.8 2.3E-10 8E-15 109.0 -3.2 100 308-412 4-122 (270)
64 3g5u_A MCG1178, multidrug resi 98.7 9.7E-09 3.3E-13 117.1 5.4 133 280-413 387-554 (1284)
65 3g5u_A MCG1178, multidrug resi 98.6 4.4E-08 1.5E-12 111.7 9.2 132 280-412 1030-1198(1284)
66 4f4c_A Multidrug resistance pr 98.6 8.5E-09 2.9E-13 117.9 3.2 133 280-413 415-582 (1321)
67 2iw3_A Elongation factor 3A; a 98.6 1.9E-08 6.4E-13 110.6 5.4 130 280-413 435-576 (986)
68 4f4c_A Multidrug resistance pr 98.6 3.2E-08 1.1E-12 113.1 6.4 130 280-412 1076-1244(1321)
69 2iw3_A Elongation factor 3A; a 98.6 6.6E-09 2.2E-13 114.2 0.6 56 283-339 674-732 (986)
70 1x3s_A RAS-related protein RAB 98.5 5.9E-08 2E-12 85.9 4.8 112 192-321 83-194 (195)
71 2e87_A Hypothetical protein PH 98.5 3.2E-09 1.1E-13 105.0 -4.1 73 307-397 168-241 (357)
72 3ux8_A Excinuclease ABC, A sub 98.5 6.1E-08 2.1E-12 103.6 5.5 41 373-413 186-232 (670)
73 2npi_A Protein CLP1; CLP1-PCF1 98.5 2.3E-08 8E-13 102.1 1.1 110 301-412 132-269 (460)
74 3b85_A Phosphate starvation-in 98.4 5.3E-09 1.8E-13 95.7 -5.1 43 290-338 10-53 (208)
75 1tq4_A IIGP1, interferon-induc 98.4 2.6E-08 9E-13 100.2 -0.5 88 305-404 68-173 (413)
76 3iev_A GTP-binding protein ERA 98.3 3.9E-07 1.3E-11 88.1 5.3 106 180-306 76-183 (308)
77 1ye8_A Protein THEP1, hypothet 98.3 3.2E-07 1.1E-11 81.7 3.1 95 309-411 3-107 (178)
78 4gp7_A Metallophosphoesterase; 98.2 1.7E-07 5.8E-12 82.6 0.4 28 386-413 82-111 (171)
79 3pqc_A Probable GTP-binding pr 98.2 1.6E-06 5.4E-11 76.4 6.7 97 188-303 96-192 (195)
80 4dhe_A Probable GTP-binding pr 98.2 1.2E-06 4.3E-11 79.4 6.1 100 189-304 108-210 (223)
81 1svi_A GTP-binding protein YSX 98.2 3.4E-06 1.2E-10 74.6 7.6 92 192-302 101-192 (195)
82 1wf3_A GTP-binding protein; GT 98.2 1.9E-06 6.6E-11 83.0 6.3 103 180-305 70-173 (301)
83 4a9a_A Ribosome-interacting GT 98.1 1.4E-06 4.8E-11 86.5 4.2 57 308-380 74-131 (376)
84 3t5g_A GTP-binding protein RHE 98.1 7.8E-07 2.7E-11 77.8 1.9 106 193-321 74-180 (181)
85 4dcu_A GTP-binding protein ENG 98.1 3.9E-06 1.3E-10 85.5 6.9 96 190-303 271-367 (456)
86 3b9q_A Chloroplast SRP recepto 98.0 2.7E-07 9.3E-12 89.1 -2.7 104 304-410 97-228 (302)
87 3ux8_A Excinuclease ABC, A sub 98.0 8.7E-07 3E-11 94.7 0.9 33 381-413 537-574 (670)
88 2dyk_A GTP-binding protein; GT 98.0 2.3E-06 8E-11 72.9 3.4 91 186-302 69-159 (161)
89 2qu8_A Putative nucleolar GTP- 98.0 2E-05 6.8E-10 72.0 9.2 98 194-303 106-203 (228)
90 2gj8_A MNME, tRNA modification 98.0 5.3E-06 1.8E-10 72.5 5.0 58 308-380 6-64 (172)
91 3i8s_A Ferrous iron transport 98.0 7.7E-06 2.6E-10 77.6 6.1 58 308-381 5-63 (274)
92 3iby_A Ferrous iron transport 98.0 4.7E-06 1.6E-10 78.3 4.4 57 308-380 3-60 (256)
93 2hjg_A GTP-binding protein ENG 97.9 1E-05 3.4E-10 81.9 7.0 95 191-303 252-347 (436)
94 3b1v_A Ferrous iron uptake tra 97.9 6.5E-06 2.2E-10 78.2 5.2 57 308-380 5-61 (272)
95 1htw_A HI0065; nucleotide-bind 97.9 3.5E-06 1.2E-10 73.5 2.8 43 294-338 21-64 (158)
96 1mky_A Probable GTP-binding pr 97.9 4.4E-06 1.5E-10 84.6 4.0 114 192-330 259-372 (439)
97 2og2_A Putative signal recogni 97.9 6E-07 2E-11 88.7 -2.5 104 304-410 154-285 (359)
98 3t1o_A Gliding protein MGLA; G 97.9 7.9E-06 2.7E-10 72.0 4.9 93 192-302 93-189 (198)
99 1ek0_A Protein (GTP-binding pr 97.9 1.5E-05 5.1E-10 68.2 6.5 93 192-303 71-167 (170)
100 2qnr_A Septin-2, protein NEDD5 97.9 4.9E-07 1.7E-11 87.2 -3.6 28 308-335 20-48 (301)
101 3lxx_A GTPase IMAP family memb 97.9 7.1E-06 2.4E-10 75.8 4.3 59 308-380 31-90 (239)
102 3tkl_A RAS-related protein RAB 97.9 1.7E-05 5.9E-10 69.9 6.4 110 192-321 84-194 (196)
103 3cph_A RAS-related protein SEC 97.9 2.9E-05 9.8E-10 69.5 7.9 92 193-303 89-180 (213)
104 1wf3_A GTP-binding protein; GT 97.9 9.1E-06 3.1E-10 78.3 4.7 59 307-380 8-67 (301)
105 3a1s_A Iron(II) transport prot 97.9 8.7E-06 3E-10 76.6 4.5 57 308-380 7-64 (258)
106 2wji_A Ferrous iron transport 97.9 8.5E-06 2.9E-10 70.5 4.1 57 308-380 5-62 (165)
107 2v9p_A Replication protein E1; 97.9 1.4E-06 4.9E-11 84.0 -1.1 41 293-337 113-154 (305)
108 3iev_A GTP-binding protein ERA 97.8 1E-05 3.4E-10 78.1 4.6 61 305-380 9-71 (308)
109 1upt_A ARL1, ADP-ribosylation 97.8 5.7E-06 1.9E-10 71.2 2.5 98 192-303 70-167 (171)
110 4bas_A ADP-ribosylation factor 97.8 2.3E-05 8E-10 69.2 6.6 103 192-303 82-187 (199)
111 3k53_A Ferrous iron transport 97.8 1.1E-05 3.7E-10 76.2 4.4 57 308-380 5-62 (271)
112 3lxw_A GTPase IMAP family memb 97.8 9.4E-06 3.2E-10 75.7 3.9 59 308-380 23-82 (247)
113 1wms_A RAB-9, RAB9, RAS-relate 97.8 2.3E-05 8E-10 67.8 6.2 100 190-303 73-172 (177)
114 3reg_A RHO-like small GTPase; 97.8 5.5E-05 1.9E-09 66.9 8.7 94 192-304 90-187 (194)
115 2pt7_A CAG-ALFA; ATPase, prote 97.8 1.2E-05 4.1E-10 78.5 4.5 43 294-337 159-202 (330)
116 1ega_A Protein (GTP-binding pr 97.8 1.4E-05 4.7E-10 76.9 4.8 95 189-305 81-175 (301)
117 2wjg_A FEOB, ferrous iron tran 97.8 1.5E-05 5.3E-10 69.8 4.7 57 308-380 9-66 (188)
118 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.4E-05 4.8E-10 79.8 4.9 22 308-329 22-43 (392)
119 1vg8_A RAS-related protein RAB 97.8 1.9E-05 6.4E-10 70.4 5.3 98 192-303 76-173 (207)
120 4aby_A DNA repair protein RECN 97.8 3.2E-06 1.1E-10 84.6 0.1 36 295-331 50-85 (415)
121 1xzp_A Probable tRNA modificat 97.7 2.3E-05 7.9E-10 80.3 5.8 87 189-302 316-402 (482)
122 1rj9_A FTSY, signal recognitio 97.7 3.6E-06 1.2E-10 81.3 -0.2 33 306-338 101-134 (304)
123 2lkc_A Translation initiation 97.7 1.8E-05 6.3E-10 68.5 4.2 90 192-302 74-168 (178)
124 1svi_A GTP-binding protein YSX 97.7 1.7E-05 5.9E-10 70.0 4.0 58 307-380 24-81 (195)
125 1ega_A Protein (GTP-binding pr 97.7 1.8E-05 6E-10 76.2 4.2 58 307-379 9-67 (301)
126 2atx_A Small GTP binding prote 97.7 0.00011 3.7E-09 64.8 9.1 92 192-302 85-190 (194)
127 2cxx_A Probable GTP-binding pr 97.7 2.2E-05 7.5E-10 68.8 4.4 53 308-379 3-55 (190)
128 3gee_A MNME, tRNA modification 97.7 2.6E-05 9E-10 79.8 5.6 93 188-304 304-397 (476)
129 3sjy_A Translation initiation 97.7 6.1E-05 2.1E-09 75.3 8.0 94 191-303 93-190 (403)
130 1g16_A RAS-related protein SEC 97.7 5.5E-05 1.9E-09 64.7 6.6 92 193-303 72-163 (170)
131 2qag_B Septin-6, protein NEDD5 97.7 2.7E-05 9.1E-10 78.4 5.2 42 287-330 22-66 (427)
132 1pui_A ENGB, probable GTP-bind 97.7 1.3E-05 4.6E-10 71.7 2.7 27 304-330 23-50 (210)
133 3q3j_B RHO-related GTP-binding 97.7 3E-05 1E-09 70.2 5.0 94 192-303 94-201 (214)
134 1h65_A Chloroplast outer envel 97.7 2E-05 7E-10 74.2 3.9 58 308-380 41-99 (270)
135 3clv_A RAB5 protein, putative; 97.7 6.5E-05 2.2E-09 66.1 6.9 90 192-302 112-201 (208)
136 4dhe_A Probable GTP-binding pr 97.7 1.9E-05 6.6E-10 71.4 3.5 60 307-380 30-91 (223)
137 1zd9_A ADP-ribosylation factor 97.7 4E-05 1.4E-09 67.6 5.5 98 192-303 86-183 (188)
138 1r8s_A ADP-ribosylation factor 97.7 1.1E-05 3.8E-10 68.9 1.8 98 192-303 63-160 (164)
139 1s0u_A EIF-2-gamma, translatio 97.7 0.00012 4.2E-09 73.2 9.6 98 190-303 98-196 (408)
140 3pih_A Uvrabc system protein A 97.7 6.4E-05 2.2E-09 82.4 8.1 39 375-413 791-836 (916)
141 3tw8_B RAS-related protein RAB 97.7 4.5E-05 1.5E-09 66.0 5.6 91 192-302 77-168 (181)
142 2efe_B Small GTP-binding prote 97.7 0.00015 5.3E-09 62.7 9.0 92 193-303 81-173 (181)
143 3t5d_A Septin-7; GTP-binding p 97.7 2.8E-05 9.4E-10 73.5 4.4 64 308-379 10-76 (274)
144 2fu5_C RAS-related protein RAB 97.6 0.00016 5.5E-09 62.9 8.9 92 192-302 76-168 (183)
145 2h57_A ADP-ribosylation factor 97.6 1.5E-05 5E-10 70.4 2.1 100 192-303 86-185 (190)
146 3pqc_A Probable GTP-binding pr 97.6 4.7E-05 1.6E-09 66.8 5.5 56 307-379 24-79 (195)
147 3bwd_D RAC-like GTP-binding pr 97.6 6E-05 2.1E-09 65.4 6.1 92 192-302 75-178 (182)
148 3def_A T7I23.11 protein; chlor 97.6 3.1E-05 1.1E-09 72.7 4.4 58 308-380 38-96 (262)
149 2gj8_A MNME, tRNA modification 97.6 2.1E-05 7.2E-10 68.6 2.9 88 190-303 77-164 (172)
150 4gzl_A RAS-related C3 botulinu 97.6 6.4E-05 2.2E-09 67.3 6.2 91 192-301 97-201 (204)
151 2hup_A RAS-related protein RAB 97.6 0.0001 3.5E-09 65.8 7.4 94 192-303 97-191 (201)
152 2ohf_A Protein OLA1, GTP-bindi 97.6 2.6E-05 8.8E-10 77.8 3.6 23 307-329 23-45 (396)
153 2vf7_A UVRA2, excinuclease ABC 97.6 2.1E-05 7.3E-10 85.5 3.3 40 374-413 715-761 (842)
154 3con_A GTPase NRAS; structural 97.6 8.9E-05 3.1E-09 65.1 6.8 94 192-303 88-181 (190)
155 2q3h_A RAS homolog gene family 97.6 0.00015 5.1E-09 64.3 8.4 91 193-302 88-192 (201)
156 1zj6_A ADP-ribosylation factor 97.6 1.6E-05 5.5E-10 69.9 1.9 97 193-303 80-176 (187)
157 1r2q_A RAS-related protein RAB 97.6 0.00014 4.7E-09 62.1 7.8 93 192-303 74-167 (170)
158 2yc2_C IFT27, small RAB-relate 97.6 0.00022 7.5E-09 63.2 9.4 98 189-302 89-189 (208)
159 3kkq_A RAS-related protein M-R 97.6 3.2E-05 1.1E-09 67.4 3.8 91 194-302 87-179 (183)
160 2h17_A ADP-ribosylation factor 97.6 3.5E-05 1.2E-09 67.5 4.0 95 192-300 84-178 (181)
161 1mh1_A RAC1; GTP-binding, GTPa 97.6 0.0001 3.5E-09 64.0 7.1 94 192-304 72-179 (186)
162 1jal_A YCHF protein; nucleotid 97.6 2.3E-05 8E-10 77.3 3.1 22 308-329 4-25 (363)
163 1z0f_A RAB14, member RAS oncog 97.6 0.00011 3.6E-09 63.4 7.0 92 192-302 83-175 (179)
164 3j2k_7 ERF3, eukaryotic polype 97.6 0.00017 6E-09 72.9 9.5 94 190-297 112-217 (439)
165 1z08_A RAS-related protein RAB 97.6 0.00011 3.8E-09 62.9 6.9 92 192-302 74-166 (170)
166 2ce2_X GTPase HRAS; signaling 97.6 8E-05 2.7E-09 63.1 6.0 91 194-302 72-162 (166)
167 2f7s_A C25KG, RAS-related prot 97.6 0.00012 4E-09 65.9 7.4 95 190-302 101-196 (217)
168 2gco_A H9, RHO-related GTP-bin 97.6 0.00017 5.9E-09 64.2 8.4 92 192-302 92-197 (201)
169 2g6b_A RAS-related protein RAB 97.6 0.0001 3.5E-09 63.8 6.7 94 191-303 78-172 (180)
170 1z2a_A RAS-related protein RAB 97.6 7.2E-05 2.5E-09 63.8 5.6 90 193-302 74-164 (168)
171 2x77_A ADP-ribosylation factor 97.6 1.3E-05 4.6E-10 70.5 0.9 97 193-303 86-182 (189)
172 2b6h_A ADP-ribosylation factor 97.6 2.8E-05 9.6E-10 69.1 2.9 97 193-303 93-189 (192)
173 1wb1_A Translation elongation 97.6 5.8E-05 2E-09 77.4 5.6 97 189-302 89-186 (482)
174 4djt_A GTP-binding nuclear pro 97.6 0.00013 4.5E-09 65.6 7.3 90 194-302 82-172 (218)
175 3dz8_A RAS-related protein RAB 97.6 0.00013 4.4E-09 64.3 7.0 93 191-302 90-183 (191)
176 2gf9_A RAS-related protein RAB 97.6 0.00013 4.4E-09 64.1 7.0 93 192-303 90-183 (189)
177 1zbd_A Rabphilin-3A; G protein 97.6 0.00022 7.6E-09 63.2 8.6 94 190-302 74-168 (203)
178 1znw_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 69.9 3.1 28 304-331 17-45 (207)
179 2hxs_A RAB-26, RAS-related pro 97.6 0.00011 3.8E-09 63.4 6.5 95 193-303 76-171 (178)
180 1ksh_A ARF-like protein 2; sma 97.5 3.3E-05 1.1E-09 67.6 3.0 101 191-305 80-180 (186)
181 2gf0_A GTP-binding protein DI- 97.5 5.6E-05 1.9E-09 66.7 4.4 94 194-305 77-171 (199)
182 2fg5_A RAB-22B, RAS-related pr 97.5 9.8E-05 3.4E-09 65.2 6.0 93 193-304 92-185 (192)
183 1u8z_A RAS-related protein RAL 97.5 7.2E-05 2.5E-09 63.6 4.8 91 194-302 73-164 (168)
184 1ky3_A GTP-binding protein YPT 97.5 6.5E-05 2.2E-09 65.0 4.6 98 191-302 76-175 (182)
185 2j1l_A RHO-related GTP-binding 97.5 0.00014 4.7E-09 65.6 6.9 92 193-303 102-207 (214)
186 2y8e_A RAB-protein 6, GH09086P 97.5 0.00015 5.1E-09 62.5 6.8 91 194-303 84-175 (179)
187 2fv8_A H6, RHO-related GTP-bin 97.5 0.0002 6.7E-09 64.1 7.8 93 192-303 92-198 (207)
188 2lkc_A Translation initiation 97.5 9.3E-05 3.2E-09 63.9 5.5 24 306-329 8-31 (178)
189 1udx_A The GTP-binding protein 97.5 2.9E-05 9.8E-10 78.1 2.4 23 308-330 159-181 (416)
190 2a5j_A RAS-related protein RAB 97.5 0.00016 5.4E-09 63.8 7.0 91 193-302 90-181 (191)
191 2xtp_A GTPase IMAP family memb 97.5 6.8E-05 2.3E-09 69.9 4.7 59 307-380 23-83 (260)
192 3bc1_A RAS-related protein RAB 97.5 0.00021 7.3E-09 62.3 7.7 95 190-302 87-182 (195)
193 3p26_A Elongation factor 1 alp 97.5 0.00013 4.4E-09 74.8 7.1 96 190-296 128-229 (483)
194 1moz_A ARL1, ADP-ribosylation 97.5 0.00014 4.9E-09 63.1 6.4 97 192-303 81-178 (183)
195 1fzq_A ADP-ribosylation factor 97.5 0.00011 3.9E-09 64.3 5.7 98 192-303 79-176 (181)
196 4dsu_A GTPase KRAS, isoform 2B 97.5 0.00021 7.1E-09 62.2 7.4 91 195-303 74-164 (189)
197 2bcg_Y Protein YP2, GTP-bindin 97.5 0.00029 9.9E-09 62.7 8.5 93 192-303 76-169 (206)
198 3llu_A RAS-related GTP-binding 97.5 3.8E-05 1.3E-09 68.3 2.6 97 194-301 93-193 (196)
199 1z6g_A Guanylate kinase; struc 97.5 3.8E-05 1.3E-09 70.1 2.7 30 301-330 17-47 (218)
200 1z0j_A RAB-22, RAS-related pro 97.5 0.00014 4.9E-09 62.0 6.2 92 193-303 75-167 (170)
201 1m7b_A RND3/RHOE small GTP-bin 97.5 0.00022 7.7E-09 62.3 7.5 93 192-303 74-181 (184)
202 2ew1_A RAS-related protein RAB 97.5 0.00018 6.3E-09 64.4 7.0 95 190-303 92-187 (201)
203 2qag_C Septin-7; cell cycle, c 97.5 8.3E-05 2.8E-09 74.8 5.1 44 286-335 17-60 (418)
204 2j0v_A RAC-like GTP-binding pr 97.5 0.00012 4.1E-09 65.6 5.7 93 192-303 76-178 (212)
205 2dyk_A GTP-binding protein; GT 97.5 6.4E-05 2.2E-09 63.7 3.7 58 308-380 3-61 (161)
206 1f6b_A SAR1; gtpases, N-termin 97.5 7.8E-05 2.7E-09 66.5 4.3 34 294-328 14-47 (198)
207 2il1_A RAB12; G-protein, GDP, 97.5 9.4E-05 3.2E-09 65.4 4.8 92 193-302 95-187 (192)
208 2qu8_A Putative nucleolar GTP- 97.5 6.7E-05 2.3E-09 68.4 3.9 57 307-379 30-87 (228)
209 2c78_A Elongation factor TU-A; 97.5 8.9E-05 3E-09 74.2 5.1 86 191-291 93-180 (405)
210 2ygr_A Uvrabc system protein A 97.4 0.0001 3.6E-09 80.9 5.9 40 374-413 848-894 (993)
211 2r6f_A Excinuclease ABC subuni 97.4 6.9E-05 2.3E-09 82.1 4.5 41 373-413 829-876 (972)
212 1f6b_A SAR1; gtpases, N-termin 97.4 0.00012 4E-09 65.4 5.3 98 193-301 89-195 (198)
213 2bme_A RAB4A, RAS-related prot 97.4 0.00031 1E-08 61.2 7.9 94 190-302 76-170 (186)
214 3geh_A MNME, tRNA modification 97.4 6.8E-05 2.3E-09 76.4 4.1 89 188-304 295-383 (462)
215 3qq5_A Small GTP-binding prote 97.4 4.7E-05 1.6E-09 76.7 2.9 89 189-303 106-194 (423)
216 2nzj_A GTP-binding protein REM 97.4 0.00017 5.7E-09 62.0 6.1 92 193-302 74-166 (175)
217 2p5s_A RAS and EF-hand domain 97.4 0.00017 5.9E-09 64.0 6.3 92 193-303 97-195 (199)
218 3q72_A GTP-binding protein RAD 97.4 0.00029 1E-08 60.0 7.5 92 193-302 69-161 (166)
219 2iwr_A Centaurin gamma 1; ANK 97.4 0.00014 4.6E-09 63.1 5.5 92 196-302 72-166 (178)
220 3tw8_B RAS-related protein RAB 97.4 9.9E-05 3.4E-09 63.8 4.6 22 308-329 11-32 (181)
221 2qtf_A Protein HFLX, GTP-bindi 97.4 5.6E-05 1.9E-09 74.7 3.2 55 309-379 182-237 (364)
222 3t34_A Dynamin-related protein 97.4 0.00027 9.1E-09 69.4 8.1 22 308-329 36-57 (360)
223 1kk1_A EIF2gamma; initiation o 97.4 9.4E-05 3.2E-09 74.1 4.9 99 190-304 100-199 (410)
224 1c1y_A RAS-related protein RAP 97.4 8E-05 2.7E-09 63.5 3.8 91 195-302 73-164 (167)
225 3gee_A MNME, tRNA modification 97.4 3.6E-05 1.2E-09 78.8 1.8 58 308-380 235-293 (476)
226 1wxq_A GTP-binding protein; st 97.4 5.4E-05 1.8E-09 75.7 3.0 22 308-329 2-23 (397)
227 1f5n_A Interferon-induced guan 97.4 0.00012 4E-09 76.8 5.6 62 308-382 40-105 (592)
228 2a9k_A RAS-related protein RAL 97.4 0.00013 4.5E-09 63.3 5.1 91 194-302 87-178 (187)
229 3o47_A ADP-ribosylation factor 97.4 0.00011 3.6E-09 71.6 4.9 98 192-303 228-325 (329)
230 1zun_B Sulfate adenylate trans 97.4 0.00024 8.1E-09 71.8 7.6 89 192-296 123-215 (434)
231 1m2o_B GTP-binding protein SAR 97.4 0.00021 7.1E-09 63.2 6.4 59 304-380 21-79 (190)
232 4dkx_A RAS-related protein RAB 97.4 0.00035 1.2E-08 63.8 8.0 109 172-303 65-174 (216)
233 3cpj_B GTP-binding protein YPT 97.4 0.00034 1.2E-08 63.4 8.0 95 192-305 81-176 (223)
234 1m2o_B GTP-binding protein SAR 97.4 9.5E-05 3.2E-09 65.4 4.0 99 192-301 86-188 (190)
235 1z0j_A RAB-22, RAS-related pro 97.4 0.00017 5.7E-09 61.6 5.4 58 308-379 8-66 (170)
236 2y8e_A RAB-protein 6, GH09086P 97.4 0.00014 4.7E-09 62.7 4.9 22 308-329 16-37 (179)
237 2o52_A RAS-related protein RAB 97.4 0.0003 1E-08 62.6 7.2 91 193-302 94-185 (200)
238 2oil_A CATX-8, RAS-related pro 97.4 0.00029 1E-08 61.9 7.0 91 193-302 94-185 (193)
239 3gj0_A GTP-binding nuclear pro 97.4 0.00012 4.2E-09 66.1 4.6 90 194-304 85-174 (221)
240 1gwn_A RHO-related GTP-binding 97.4 0.00028 9.7E-09 63.3 7.0 92 192-302 95-201 (205)
241 1xzp_A Probable tRNA modificat 97.4 4.3E-05 1.5E-09 78.3 1.7 57 308-379 245-302 (482)
242 3tr5_A RF-3, peptide chain rel 97.4 0.00024 8.3E-09 73.5 7.4 52 280-331 252-325 (528)
243 2bov_A RAla, RAS-related prote 97.4 0.00016 5.5E-09 64.1 5.3 91 194-302 83-174 (206)
244 1lnz_A SPO0B-associated GTP-bi 97.4 0.0001 3.4E-09 72.3 4.2 100 189-304 229-329 (342)
245 1d2e_A Elongation factor TU (E 97.4 0.00024 8.2E-09 70.9 7.0 99 190-303 83-193 (397)
246 1wms_A RAB-9, RAB9, RAS-relate 97.4 0.00013 4.3E-09 63.0 4.4 22 308-329 9-30 (177)
247 1z06_A RAS-related protein RAB 97.4 0.00012 4.1E-09 64.3 4.2 92 192-301 89-184 (189)
248 2erx_A GTP-binding protein DI- 97.4 9.3E-05 3.2E-09 63.3 3.4 94 194-304 72-166 (172)
249 3q72_A GTP-binding protein RAD 97.4 0.00012 4.2E-09 62.4 4.2 58 308-380 4-61 (166)
250 1g16_A RAS-related protein SEC 97.4 0.00011 3.9E-09 62.7 4.0 22 308-329 5-26 (170)
251 3oes_A GTPase rhebl1; small GT 97.4 0.00022 7.5E-09 63.4 6.0 95 192-304 91-186 (201)
252 3zvr_A Dynamin-1; hydrolase, D 97.3 0.00011 3.7E-09 79.0 4.5 87 195-301 186-274 (772)
253 3cbq_A GTP-binding protein REM 97.3 0.00032 1.1E-08 62.4 6.9 92 194-303 94-186 (195)
254 3c5c_A RAS-like protein 12; GD 97.3 0.0002 6.8E-09 63.1 5.4 94 193-302 88-183 (187)
255 3th5_A RAS-related C3 botulinu 96.4 3E-05 1E-09 69.2 0.0 92 193-301 98-201 (204)
256 1z2a_A RAS-related protein RAB 97.3 0.00015 5.1E-09 61.8 4.3 22 308-329 7-28 (168)
257 3tkl_A RAS-related protein RAB 97.3 0.00018 6.1E-09 63.2 4.9 22 308-329 18-39 (196)
258 3ihw_A Centg3; RAS, centaurin, 97.3 0.00013 4.6E-09 64.2 4.0 90 196-302 85-177 (184)
259 3szr_A Interferon-induced GTP- 97.3 0.00016 5.5E-09 76.2 5.3 31 308-338 47-78 (608)
260 3geh_A MNME, tRNA modification 97.3 4.5E-05 1.5E-09 77.8 1.0 57 308-379 226-283 (462)
261 1z08_A RAS-related protein RAB 97.3 0.00023 7.7E-09 60.9 5.4 22 308-329 8-29 (170)
262 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00019 6.5E-09 62.5 4.9 22 308-329 6-27 (189)
263 3lvq_E ARF-GAP with SH3 domain 97.3 0.0001 3.6E-09 75.5 3.6 101 190-304 383-483 (497)
264 1kao_A RAP2A; GTP-binding prot 97.3 0.00026 8.8E-09 60.0 5.5 91 194-302 72-163 (167)
265 3euj_A Chromosome partition pr 97.3 0.00013 4.3E-09 74.6 4.1 43 296-340 20-63 (483)
266 2wji_A Ferrous iron transport 97.3 5.9E-05 2E-09 65.1 1.4 82 196-302 81-162 (165)
267 2aka_B Dynamin-1; fusion prote 97.3 0.00018 6.3E-09 68.1 5.0 24 307-330 27-50 (299)
268 3i8s_A Ferrous iron transport 97.3 4.7E-05 1.6E-09 72.1 0.8 87 194-305 83-169 (274)
269 1s96_A Guanylate kinase, GMP k 97.3 8.7E-05 3E-09 68.0 2.6 28 305-332 14-42 (219)
270 2atv_A RERG, RAS-like estrogen 97.3 0.00013 4.3E-09 64.6 3.6 91 194-302 96-188 (196)
271 2fn4_A P23, RAS-related protei 97.3 0.00043 1.5E-08 59.6 7.0 90 195-302 79-169 (181)
272 1vg8_A RAS-related protein RAB 97.3 0.00026 8.9E-09 62.8 5.6 22 308-329 10-31 (207)
273 3cb4_D GTP-binding protein LEP 97.3 0.00071 2.4E-08 71.1 9.7 119 193-332 91-219 (599)
274 2bme_A RAB4A, RAS-related prot 97.3 0.00022 7.7E-09 62.0 5.0 22 308-329 12-33 (186)
275 2gza_A Type IV secretion syste 97.3 9.3E-05 3.2E-09 73.0 2.8 41 297-338 166-207 (361)
276 3q85_A GTP-binding protein REM 97.3 0.00029 1E-08 60.2 5.7 90 195-302 74-164 (169)
277 3cph_A RAS-related protein SEC 97.3 0.00019 6.3E-09 64.1 4.5 22 308-329 22-43 (213)
278 2g6b_A RAS-related protein RAB 97.3 0.00025 8.4E-09 61.3 5.2 22 308-329 12-33 (180)
279 3l0i_B RAS-related protein RAB 97.3 3.8E-05 1.3E-09 68.3 -0.1 93 193-304 102-195 (199)
280 1fzq_A ADP-ribosylation factor 97.3 0.00014 4.7E-09 63.8 3.6 55 307-379 17-71 (181)
281 2ywe_A GTP-binding protein LEP 97.3 0.00041 1.4E-08 72.9 7.6 91 193-304 93-183 (600)
282 2fh5_B SR-beta, signal recogni 97.3 0.00049 1.7E-08 61.6 7.2 68 193-268 75-142 (214)
283 1ek0_A Protein (GTP-binding pr 97.3 0.00024 8.3E-09 60.5 4.9 22 308-329 5-26 (170)
284 2nzj_A GTP-binding protein REM 97.3 0.00027 9.3E-09 60.7 5.3 22 308-329 6-27 (175)
285 3iby_A Ferrous iron transport 97.3 4E-05 1.4E-09 71.9 -0.1 83 195-302 82-164 (256)
286 2eyu_A Twitching motility prot 97.3 6.8E-05 2.3E-09 70.6 1.5 42 294-338 15-58 (261)
287 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00027 9.2E-09 62.9 5.4 22 308-329 10-31 (206)
288 2qm8_A GTPase/ATPase; G protei 97.2 6.5E-05 2.2E-09 73.4 1.3 44 293-337 42-86 (337)
289 2fn4_A P23, RAS-related protei 97.2 0.00034 1.1E-08 60.3 5.6 22 308-329 11-32 (181)
290 3c5h_A Glucocorticoid receptor 97.2 0.0004 1.4E-08 64.8 6.5 89 196-301 162-251 (255)
291 3izq_1 HBS1P, elongation facto 97.2 0.00037 1.3E-08 73.5 6.9 98 188-296 260-363 (611)
292 1u8z_A RAS-related protein RAL 97.2 0.00027 9.2E-09 59.9 4.9 22 308-329 6-27 (168)
293 1kao_A RAP2A; GTP-binding prot 97.2 0.00027 9.4E-09 59.8 4.9 22 308-329 5-26 (167)
294 2zej_A Dardarin, leucine-rich 97.2 0.00023 7.8E-09 62.4 4.4 23 308-330 4-26 (184)
295 1jwy_B Dynamin A GTPase domain 97.2 0.00024 8.1E-09 68.0 4.8 24 307-330 25-48 (315)
296 2www_A Methylmalonic aciduria 97.2 4.7E-05 1.6E-09 74.8 -0.2 28 308-335 76-103 (349)
297 2wkq_A NPH1-1, RAS-related C3 97.2 0.00043 1.5E-08 66.3 6.6 94 191-303 221-328 (332)
298 1e69_A Chromosome segregation 97.2 0.00038 1.3E-08 67.3 6.2 32 382-413 214-251 (322)
299 2bov_A RAla, RAS-related prote 97.2 0.00029 1E-08 62.4 4.9 22 308-329 16-37 (206)
300 2fg5_A RAB-22B, RAS-related pr 97.2 0.00038 1.3E-08 61.4 5.6 58 308-379 25-83 (192)
301 1oix_A RAS-related protein RAB 97.2 0.00042 1.4E-08 61.3 5.8 24 308-331 31-54 (191)
302 1jny_A EF-1-alpha, elongation 97.2 0.0013 4.6E-08 66.2 10.2 95 190-297 101-205 (435)
303 2e87_A Hypothetical protein PH 97.2 0.00096 3.3E-08 65.4 8.9 93 192-303 242-334 (357)
304 1c1y_A RAS-related protein RAP 97.2 0.0004 1.4E-08 59.0 5.3 21 308-328 5-25 (167)
305 2f9l_A RAB11B, member RAS onco 97.2 0.00034 1.2E-08 62.1 5.0 23 308-330 7-29 (199)
306 2qag_A Septin-2, protein NEDD5 97.2 0.00022 7.4E-09 70.3 3.9 24 308-331 39-62 (361)
307 1upt_A ARL1, ADP-ribosylation 97.2 0.00044 1.5E-08 59.1 5.4 22 307-328 8-29 (171)
308 2a9k_A RAS-related protein RAL 97.1 0.00036 1.2E-08 60.5 4.9 22 308-329 20-41 (187)
309 2cxx_A Probable GTP-binding pr 97.1 0.00065 2.2E-08 59.2 6.4 55 242-303 124-182 (190)
310 3con_A GTPase NRAS; structural 97.1 0.00037 1.3E-08 61.0 4.9 22 308-329 23-44 (190)
311 3clv_A RAB5 protein, putative; 97.1 0.00037 1.3E-08 61.1 4.8 23 308-330 9-31 (208)
312 3a00_A Guanylate kinase, GMP k 97.1 0.00018 6.2E-09 63.7 2.8 23 309-331 4-26 (186)
313 1r2q_A RAS-related protein RAB 97.1 0.00045 1.6E-08 58.7 5.2 21 308-328 8-28 (170)
314 2dby_A GTP-binding protein; GD 97.1 0.00014 4.8E-09 71.9 2.1 23 308-330 3-25 (368)
315 1lvg_A Guanylate kinase, GMP k 97.1 0.0002 6.9E-09 64.2 3.0 24 308-331 6-29 (198)
316 2ce2_X GTPase HRAS; signaling 97.1 0.00042 1.4E-08 58.5 4.9 22 308-329 5-26 (166)
317 2il1_A RAB12; G-protein, GDP, 97.1 0.00031 1E-08 62.1 4.1 22 308-329 28-49 (192)
318 2o52_A RAS-related protein RAB 97.1 0.00029 1E-08 62.7 4.0 22 308-329 27-48 (200)
319 3c8u_A Fructokinase; YP_612366 97.1 0.00012 4E-09 66.1 1.3 28 305-332 20-48 (208)
320 3tr0_A Guanylate kinase, GMP k 97.1 0.00023 7.7E-09 63.5 3.2 25 306-330 6-31 (205)
321 3dpu_A RAB family protein; roc 97.1 0.00043 1.5E-08 71.7 5.8 88 195-305 120-208 (535)
322 2ew1_A RAS-related protein RAB 97.1 0.0004 1.4E-08 62.2 4.8 22 308-329 28-49 (201)
323 2oil_A CATX-8, RAS-related pro 97.1 0.00062 2.1E-08 59.8 6.0 22 308-329 27-48 (193)
324 1ky3_A GTP-binding protein YPT 97.1 0.00031 1.1E-08 60.6 4.0 22 308-329 10-31 (182)
325 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00063 2.2E-08 67.1 6.5 100 189-303 250-352 (364)
326 2x2e_A Dynamin-1; nitration, h 97.1 0.00026 9E-09 69.4 3.6 24 307-330 32-55 (353)
327 1z06_A RAS-related protein RAB 97.1 0.00039 1.3E-08 61.0 4.4 22 308-329 22-43 (189)
328 2ged_A SR-beta, signal recogni 97.1 0.00032 1.1E-08 61.6 3.8 24 307-330 49-72 (193)
329 2gf9_A RAS-related protein RAB 97.1 0.00086 2.9E-08 58.7 6.6 22 308-329 24-45 (189)
330 3t5g_A GTP-binding protein RHE 97.1 0.00064 2.2E-08 58.9 5.7 21 308-328 8-28 (181)
331 1z0f_A RAB14, member RAS oncog 97.1 0.00062 2.1E-08 58.5 5.6 22 308-329 17-38 (179)
332 1moz_A ARL1, ADP-ribosylation 97.1 0.00036 1.2E-08 60.5 4.0 56 306-379 18-73 (183)
333 2jeo_A Uridine-cytidine kinase 97.0 0.00022 7.6E-09 66.0 2.7 39 291-330 10-49 (245)
334 2aka_B Dynamin-1; fusion prote 97.0 0.00032 1.1E-08 66.4 3.8 96 187-301 152-249 (299)
335 2efe_B Small GTP-binding prote 97.0 0.00043 1.5E-08 59.8 4.4 22 308-329 14-35 (181)
336 2h17_A ADP-ribosylation factor 97.0 0.0005 1.7E-08 59.9 4.8 55 307-379 22-76 (181)
337 1lnz_A SPO0B-associated GTP-bi 97.0 0.00016 5.5E-09 70.8 1.7 56 308-379 160-217 (342)
338 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.7E-09 65.2 2.6 30 301-330 21-52 (231)
339 3mca_A HBS1, elongation factor 97.0 0.00049 1.7E-08 72.3 5.4 86 192-293 274-371 (592)
340 2j69_A Bacterial dynamin-like 97.0 0.00025 8.7E-09 75.9 3.3 26 305-330 68-93 (695)
341 2erx_A GTP-binding protein DI- 97.0 0.00072 2.5E-08 57.6 5.5 21 308-328 5-25 (172)
342 2q3h_A RAS homolog gene family 97.0 0.00059 2E-08 60.3 5.1 22 307-328 21-42 (201)
343 3a1s_A Iron(II) transport prot 97.0 0.00014 4.8E-09 68.2 0.9 84 195-303 82-165 (258)
344 1g7s_A Translation initiation 97.0 0.00063 2.2E-08 71.4 6.0 96 192-302 89-215 (594)
345 1zj6_A ADP-ribosylation factor 97.0 0.00063 2.2E-08 59.5 5.1 23 306-328 16-38 (187)
346 1f60_A Elongation factor EEF1A 97.0 0.00044 1.5E-08 70.4 4.4 97 189-298 101-205 (458)
347 1zbd_A Rabphilin-3A; G protein 97.0 0.00077 2.6E-08 59.7 5.6 22 308-329 10-31 (203)
348 4bas_A ADP-ribosylation factor 97.0 0.00064 2.2E-08 59.7 5.0 23 307-329 18-40 (199)
349 3r7w_A Gtpase1, GTP-binding pr 97.0 0.00041 1.4E-08 66.7 3.9 57 308-379 5-63 (307)
350 2x77_A ADP-ribosylation factor 97.0 0.00075 2.6E-08 59.0 5.3 23 306-328 22-44 (189)
351 3thx_B DNA mismatch repair pro 97.0 0.00021 7.2E-09 78.5 2.1 97 295-413 662-762 (918)
352 3q85_A GTP-binding protein REM 97.0 0.00053 1.8E-08 58.5 4.2 23 308-330 4-26 (169)
353 2a5j_A RAS-related protein RAB 97.0 0.00043 1.5E-08 60.9 3.7 22 308-329 23-44 (191)
354 3avx_A Elongation factor TS, e 97.0 0.0012 4.2E-08 73.6 8.0 99 189-302 375-483 (1289)
355 1ksh_A ARF-like protein 2; sma 97.0 0.00081 2.8E-08 58.6 5.4 23 307-329 19-41 (186)
356 1zp6_A Hypothetical protein AT 97.0 0.0005 1.7E-08 60.5 4.0 25 305-329 7-32 (191)
357 3bc1_A RAS-related protein RAB 97.0 0.00077 2.6E-08 58.7 5.2 22 308-329 13-34 (195)
358 3cpj_B GTP-binding protein YPT 96.9 0.0005 1.7E-08 62.3 4.1 22 308-329 15-36 (223)
359 1x3s_A RAS-related protein RAB 96.9 0.00081 2.8E-08 58.8 5.3 22 308-329 17-38 (195)
360 1r8s_A ADP-ribosylation factor 96.9 0.00078 2.7E-08 57.1 5.0 21 308-328 2-22 (164)
361 2g3y_A GTP-binding protein GEM 96.9 0.0015 5E-08 59.2 7.1 92 193-302 108-200 (211)
362 3t5d_A Septin-7; GTP-binding p 96.9 0.00053 1.8E-08 64.6 4.2 84 196-303 115-202 (274)
363 1jwy_B Dynamin A GTPase domain 96.9 0.00024 8.4E-09 67.9 1.8 103 182-303 153-260 (315)
364 2zej_A Dardarin, leucine-rich 96.9 0.00011 3.9E-09 64.5 -0.6 92 196-302 79-175 (184)
365 1zd9_A ADP-ribosylation factor 96.9 0.00096 3.3E-08 58.5 5.5 22 308-329 24-45 (188)
366 3oes_A GTPase rhebl1; small GT 96.9 0.00098 3.4E-08 59.1 5.5 22 308-329 26-47 (201)
367 3cbq_A GTP-binding protein REM 96.9 0.00043 1.5E-08 61.5 3.2 22 308-329 25-46 (195)
368 2oap_1 GSPE-2, type II secreti 96.9 0.00045 1.5E-08 71.2 3.7 33 305-337 258-291 (511)
369 2i3b_A HCR-ntpase, human cance 96.9 0.0003 1E-08 62.9 1.9 29 308-338 3-31 (189)
370 3b1v_A Ferrous iron uptake tra 96.9 0.00019 6.5E-09 67.9 0.7 84 195-303 79-162 (272)
371 2fh5_B SR-beta, signal recogni 96.9 0.001 3.6E-08 59.4 5.6 23 307-329 8-30 (214)
372 1kgd_A CASK, peripheral plasma 96.9 0.00046 1.6E-08 60.7 3.1 25 307-331 5-30 (180)
373 3kkq_A RAS-related protein M-R 96.9 0.00095 3.2E-08 57.9 5.1 22 308-329 20-41 (183)
374 2obl_A ESCN; ATPase, hydrolase 96.9 0.00031 1.1E-08 68.9 2.1 41 294-336 60-101 (347)
375 2hxs_A RAB-26, RAS-related pro 96.9 0.00031 1.1E-08 60.6 1.9 22 308-329 8-29 (178)
376 3aez_A Pantothenate kinase; tr 96.9 0.00041 1.4E-08 67.0 2.9 104 305-413 88-204 (312)
377 2gf0_A GTP-binding protein DI- 96.9 0.0011 3.6E-08 58.3 5.3 21 308-328 10-30 (199)
378 2p5s_A RAS and EF-hand domain 96.9 0.00076 2.6E-08 59.7 4.4 23 307-329 29-51 (199)
379 2atx_A Small GTP binding prote 96.9 0.0011 3.8E-08 58.2 5.4 22 308-329 20-41 (194)
380 3lxx_A GTPase IMAP family memb 96.9 0.0016 5.3E-08 59.8 6.6 61 184-255 100-160 (239)
381 2wjg_A FEOB, ferrous iron tran 96.8 0.00021 7.2E-09 62.4 0.6 85 196-305 85-169 (188)
382 3thx_A DNA mismatch repair pro 96.8 0.00084 2.9E-08 73.9 5.5 27 301-327 656-683 (934)
383 2yhs_A FTSY, cell division pro 96.8 0.00033 1.1E-08 71.6 2.1 35 304-338 290-325 (503)
384 1r5b_A Eukaryotic peptide chai 96.8 0.0018 6.3E-08 65.9 7.6 93 191-297 139-244 (467)
385 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.00097 3.3E-08 57.7 4.8 22 308-329 7-28 (186)
386 1tf7_A KAIC; homohexamer, hexa 96.8 0.00028 9.4E-09 73.0 1.5 96 305-410 279-378 (525)
387 2xtp_A GTPase IMAP family memb 96.8 0.00026 8.9E-09 65.9 1.1 103 186-305 95-208 (260)
388 2p67_A LAO/AO transport system 96.8 0.0004 1.4E-08 67.8 2.5 41 292-333 42-83 (341)
389 4gzl_A RAS-related C3 botulinu 96.8 0.0011 3.6E-08 59.3 5.1 22 307-328 31-52 (204)
390 3p32_A Probable GTPase RV1496/ 96.8 0.00043 1.5E-08 68.0 2.7 87 194-303 190-282 (355)
391 1ewq_A DNA mismatch repair pro 96.8 0.0011 3.9E-08 71.4 6.2 83 307-412 576-664 (765)
392 2fu5_C RAS-related protein RAB 96.8 0.00022 7.6E-09 62.0 0.6 21 308-328 10-30 (183)
393 2hup_A RAS-related protein RAB 96.8 0.00066 2.2E-08 60.5 3.7 22 308-329 31-52 (201)
394 2j0v_A RAC-like GTP-binding pr 96.8 0.0012 4.1E-08 58.9 5.4 21 308-328 11-31 (212)
395 1p9r_A General secretion pathw 96.8 0.00053 1.8E-08 68.9 3.3 34 305-338 165-199 (418)
396 3e70_C DPA, signal recognition 96.8 0.00039 1.3E-08 67.6 2.2 34 305-338 127-161 (328)
397 3dz8_A RAS-related protein RAB 96.8 0.00055 1.9E-08 60.2 3.0 22 308-329 25-46 (191)
398 3reg_A RHO-like small GTPase; 96.8 0.0013 4.3E-08 57.9 5.2 22 308-329 25-46 (194)
399 3gj0_A GTP-binding nuclear pro 96.8 0.0004 1.4E-08 62.7 1.9 58 308-380 17-76 (221)
400 3izy_P Translation initiation 96.8 0.0001 3.5E-09 76.4 -2.4 93 192-302 71-165 (537)
401 3c5c_A RAS-like protein 12; GD 96.7 0.0012 4.2E-08 57.9 4.9 22 308-329 23-44 (187)
402 2h57_A ADP-ribosylation factor 96.7 0.001 3.5E-08 58.3 4.3 23 307-329 22-44 (190)
403 2fv8_A H6, RHO-related GTP-bin 96.7 0.0011 3.8E-08 59.1 4.5 23 307-329 26-48 (207)
404 2f7s_A C25KG, RAS-related prot 96.7 0.00063 2.2E-08 61.0 2.9 22 308-329 27-48 (217)
405 2j1l_A RHO-related GTP-binding 96.7 0.0011 3.7E-08 59.7 4.4 21 308-328 36-56 (214)
406 4djt_A GTP-binding nuclear pro 96.7 0.00084 2.9E-08 60.2 3.5 21 308-328 13-33 (218)
407 2j41_A Guanylate kinase; GMP, 96.7 0.00077 2.6E-08 59.9 3.2 30 306-335 5-35 (207)
408 4a74_A DNA repair and recombin 96.7 0.0007 2.4E-08 61.2 3.0 28 305-332 23-51 (231)
409 2dpy_A FLII, flagellum-specifi 96.7 0.00054 1.9E-08 69.3 2.4 43 293-337 145-188 (438)
410 3lxw_A GTPase IMAP family memb 96.7 0.0013 4.6E-08 60.9 4.9 106 184-304 93-207 (247)
411 2elf_A Protein translation elo 96.7 0.00087 3E-08 66.2 3.8 92 192-302 79-177 (370)
412 3bwd_D RAC-like GTP-binding pr 96.7 0.00092 3.1E-08 57.7 3.5 23 307-329 9-31 (182)
413 1sq5_A Pantothenate kinase; P- 96.7 0.00078 2.7E-08 64.7 3.2 33 305-337 78-113 (308)
414 2qpt_A EH domain-containing pr 96.7 0.0015 5.2E-08 67.9 5.6 24 307-330 66-89 (550)
415 2gco_A H9, RHO-related GTP-bin 96.7 0.0013 4.4E-08 58.4 4.4 22 308-329 27-48 (201)
416 1nrj_B SR-beta, signal recogni 96.7 0.0009 3.1E-08 60.0 3.4 24 307-330 13-36 (218)
417 2ehv_A Hypothetical protein PH 96.6 0.00082 2.8E-08 61.5 3.0 25 305-329 28-55 (251)
418 1zcb_A G alpha I/13; GTP-bindi 96.6 0.00059 2E-08 67.3 2.2 103 191-301 219-349 (362)
419 1lw7_A Transcriptional regulat 96.6 0.00067 2.3E-08 66.7 2.6 27 308-334 172-198 (365)
420 2atv_A RERG, RAS-like estrogen 96.6 0.0022 7.5E-08 56.5 5.7 23 307-329 29-51 (196)
421 3kta_A Chromosome segregation 96.6 0.001 3.6E-08 58.1 3.4 31 305-335 25-55 (182)
422 3k53_A Ferrous iron transport 96.6 0.00021 7.1E-09 67.3 -1.3 87 194-304 79-165 (271)
423 3llu_A RAS-related GTP-binding 96.6 0.0028 9.5E-08 55.9 6.1 24 307-330 21-44 (196)
424 3asz_A Uridine kinase; cytidin 96.6 0.00079 2.7E-08 60.4 2.5 26 306-331 5-31 (211)
425 3j2k_7 ERF3, eukaryotic polype 96.6 0.0013 4.5E-08 66.4 4.4 68 308-379 19-106 (439)
426 3jvv_A Twitching mobility prot 96.6 0.00057 1.9E-08 67.2 1.6 30 306-335 123-152 (356)
427 3tau_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 59.4 3.7 27 306-332 7-34 (208)
428 2iwr_A Centaurin gamma 1; ANK 96.6 0.0019 6.4E-08 55.7 4.7 21 308-328 9-29 (178)
429 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0022 7.5E-08 55.9 5.2 22 308-329 9-30 (184)
430 2ewv_A Twitching motility prot 96.6 0.00066 2.3E-08 67.1 1.9 34 304-337 133-168 (372)
431 2bbw_A Adenylate kinase 4, AK4 96.5 0.00069 2.4E-08 62.6 1.8 30 308-337 29-61 (246)
432 3ney_A 55 kDa erythrocyte memb 96.5 0.0015 5.1E-08 58.8 3.8 26 306-331 18-44 (197)
433 3mca_A HBS1, elongation factor 96.5 0.00077 2.6E-08 70.8 2.2 72 308-379 179-266 (592)
434 3ec2_A DNA replication protein 96.5 0.00039 1.3E-08 60.9 -0.1 28 308-335 40-67 (180)
435 1nrj_B SR-beta, signal recogni 96.5 0.0045 1.6E-07 55.3 7.0 61 188-255 74-135 (218)
436 2yc2_C IFT27, small RAB-relate 96.5 0.00054 1.8E-08 60.6 0.7 22 308-329 22-43 (208)
437 3p26_A Elongation factor 1 alp 96.5 0.0011 3.6E-08 67.9 2.9 68 308-379 35-122 (483)
438 3l0i_B RAS-related protein RAB 96.5 0.00019 6.6E-09 63.7 -2.3 21 308-328 35-55 (199)
439 2b6h_A ADP-ribosylation factor 96.5 0.0016 5.3E-08 57.5 3.6 22 307-328 30-51 (192)
440 1rz3_A Hypothetical protein rb 96.5 0.0008 2.7E-08 60.2 1.7 32 305-336 20-52 (201)
441 3qq5_A Small GTP-binding prote 96.5 0.0003 1E-08 70.8 -1.3 58 308-380 36-95 (423)
442 1zo1_I IF2, translation initia 96.4 0.00045 1.5E-08 71.0 -0.3 91 192-301 70-163 (501)
443 3zvr_A Dynamin-1; hydrolase, D 96.4 0.0039 1.3E-07 67.0 6.9 50 281-330 15-75 (772)
444 1yrb_A ATP(GTP)binding protein 96.4 0.0029 1E-07 58.4 5.2 103 188-304 130-256 (262)
445 1gwn_A RHO-related GTP-binding 96.4 0.003 1E-07 56.5 5.0 22 308-329 30-51 (205)
446 1cip_A Protein (guanine nucleo 96.4 0.00093 3.2E-08 65.6 1.7 104 191-302 211-341 (353)
447 1qhl_A Protein (cell division 96.4 0.00065 2.2E-08 62.6 0.5 30 309-338 30-59 (227)
448 1pui_A ENGB, probable GTP-bind 96.4 0.0054 1.8E-07 54.4 6.5 92 194-303 106-197 (210)
449 3t1o_A Gliding protein MGLA; G 96.4 0.003 1E-07 55.0 4.7 23 308-330 16-38 (198)
450 3izq_1 HBS1P, elongation facto 96.3 0.00078 2.7E-08 71.0 1.0 24 307-330 168-191 (611)
451 3q3j_B RHO-related GTP-binding 96.3 0.0036 1.2E-07 56.3 5.1 23 307-329 28-50 (214)
452 1cr0_A DNA primase/helicase; R 96.3 0.0013 4.4E-08 62.5 2.2 39 296-335 25-64 (296)
453 2bdt_A BH3686; alpha-beta prot 96.3 0.0017 5.7E-08 57.2 2.7 20 309-328 5-24 (189)
454 2h5e_A Peptide chain release f 96.3 0.0086 2.9E-07 61.9 8.3 50 191-255 100-149 (529)
455 3q5d_A Atlastin-1; G protein, 96.3 0.0027 9.3E-08 64.2 4.3 21 309-329 70-90 (447)
456 1nij_A Hypothetical protein YJ 96.3 0.0021 7.2E-08 62.0 3.4 30 309-338 7-44 (318)
457 2x8a_A Nuclear valosin-contain 96.2 0.0018 6.2E-08 61.1 2.8 35 295-331 35-69 (274)
458 3izy_P Translation initiation 96.2 0.0019 6.5E-08 66.9 3.0 57 307-379 5-63 (537)
459 1dar_A EF-G, elongation factor 96.2 0.0076 2.6E-07 64.4 7.8 49 192-255 96-144 (691)
460 1tf7_A KAIC; homohexamer, hexa 96.2 0.0015 5.3E-08 67.4 2.3 44 294-338 26-73 (525)
461 2wsm_A Hydrogenase expression/ 96.2 0.0016 5.4E-08 58.6 2.1 82 197-303 130-212 (221)
462 4eun_A Thermoresistant glucoki 96.2 0.0019 6.4E-08 57.6 2.5 25 306-330 28-53 (200)
463 2x2e_A Dynamin-1; nitration, h 96.2 0.0016 5.4E-08 63.7 2.2 88 195-301 166-254 (353)
464 3lvq_E ARF-GAP with SH3 domain 96.2 0.004 1.4E-07 63.6 5.2 54 308-379 324-377 (497)
465 1wxq_A GTP-binding protein; st 96.2 0.0029 9.8E-08 63.1 4.0 53 242-303 216-269 (397)
466 2g3y_A GTP-binding protein GEM 96.2 0.0037 1.3E-07 56.6 4.4 22 308-329 39-60 (211)
467 2xex_A Elongation factor G; GT 96.2 0.016 5.3E-07 62.0 9.9 48 193-255 95-142 (693)
468 3uie_A Adenylyl-sulfate kinase 96.2 0.0018 6.1E-08 57.8 2.1 34 302-336 20-54 (200)
469 2wkq_A NPH1-1, RAS-related C3 96.2 0.0038 1.3E-07 59.5 4.6 22 307-328 156-177 (332)
470 2kjq_A DNAA-related protein; s 96.1 0.0014 4.8E-08 56.0 1.4 26 307-332 37-62 (149)
471 2cjw_A GTP-binding protein GEM 96.1 0.0088 3E-07 52.7 6.6 89 196-302 80-169 (192)
472 2j69_A Bacterial dynamin-like 96.1 0.0032 1.1E-07 67.3 4.4 101 188-303 192-323 (695)
473 2rdo_7 EF-G, elongation factor 96.1 0.011 3.8E-07 63.2 8.4 49 192-255 101-149 (704)
474 1kag_A SKI, shikimate kinase I 96.1 0.0027 9.2E-08 54.8 2.9 23 308-330 6-28 (173)
475 2f1r_A Molybdopterin-guanine d 96.1 0.0008 2.7E-08 59.1 -0.6 26 308-333 4-29 (171)
476 2p67_A LAO/AO transport system 96.1 0.0021 7E-08 62.7 2.2 87 194-303 167-259 (341)
477 3vqt_A RF-3, peptide chain rel 96.0 0.0089 3E-07 62.1 7.0 57 180-255 111-167 (548)
478 2qag_A Septin-2, protein NEDD5 96.0 0.0076 2.6E-07 59.2 5.8 47 242-297 176-225 (361)
479 3r7w_A Gtpase1, GTP-binding pr 95.9 0.021 7.1E-07 54.6 8.6 94 192-300 76-176 (307)
480 3th5_A RAS-related C3 botulinu 94.9 0.0013 4.5E-08 58.3 0.0 21 308-328 32-52 (204)
481 1udx_A The GTP-binding protein 95.9 0.019 6.4E-07 57.5 8.4 94 192-304 231-324 (416)
482 1wb1_A Translation elongation 95.9 0.0039 1.3E-07 63.7 3.3 63 308-379 21-84 (482)
483 4dkx_A RAS-related protein RAB 95.8 0.0054 1.8E-07 55.7 3.8 21 308-328 15-35 (216)
484 4e22_A Cytidylate kinase; P-lo 95.8 0.0026 8.9E-08 59.1 1.6 31 308-338 29-62 (252)
485 1d2e_A Elongation factor TU (E 95.8 0.003 1E-07 62.8 2.1 71 308-379 5-77 (397)
486 1ko7_A HPR kinase/phosphatase; 95.7 0.0056 1.9E-07 58.9 3.7 74 242-328 81-166 (314)
487 2ged_A SR-beta, signal recogni 95.7 0.029 1E-06 48.7 8.2 71 189-267 111-182 (193)
488 1in4_A RUVB, holliday junction 95.7 0.0019 6.6E-08 62.6 0.3 30 308-337 53-86 (334)
489 1zo1_I IF2, translation initia 95.7 0.0062 2.1E-07 62.5 4.0 22 307-328 5-26 (501)
490 1ixz_A ATP-dependent metallopr 95.7 0.0043 1.5E-07 57.3 2.6 29 302-331 46-74 (254)
491 1knq_A Gluconate kinase; ALFA/ 95.6 0.0063 2.2E-07 52.6 3.3 24 307-330 8-32 (175)
492 1kk1_A EIF2gamma; initiation o 95.6 0.0072 2.5E-07 60.3 4.0 23 308-330 12-34 (410)
493 2vp4_A Deoxynucleoside kinase; 95.6 0.0049 1.7E-07 56.3 2.4 25 305-329 18-43 (230)
494 3ohm_A Guanine nucleotide-bind 95.5 0.0051 1.7E-07 59.7 2.6 106 190-303 184-316 (327)
495 1jny_A EF-1-alpha, elongation 95.5 0.0034 1.2E-07 63.2 1.3 22 308-329 8-29 (435)
496 1ex7_A Guanylate kinase; subst 95.5 0.007 2.4E-07 53.8 3.2 22 309-330 4-25 (186)
497 2cjw_A GTP-binding protein GEM 95.5 0.0065 2.2E-07 53.6 2.9 22 308-329 8-29 (192)
498 2dy1_A Elongation factor G; tr 95.5 0.0062 2.1E-07 64.7 3.3 70 308-377 11-83 (665)
499 3l82_B F-box only protein 4; T 95.5 0.023 7.8E-07 51.6 6.4 92 196-303 125-221 (227)
500 2www_A Methylmalonic aciduria 95.5 0.006 2.1E-07 59.6 2.8 90 194-303 185-277 (349)
No 1
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.9e-40 Score=331.78 Aligned_cols=251 Identities=32% Similarity=0.617 Sum_probs=156.6
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||.+... + ++ ..+.++|||||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----~------------------~~-----------------~~~~~~C~RC~~ 44 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKSV-----L------------------EK-----------------DAEEVICQRCFR 44 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChHH-----h------------------cC-----------------CCCCEEchhHHH
Confidence 5899999999999999999997531 1 10 124699999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
++|||++.++. ++.+.|...+. ...+.+++|++|+|++|+++++.+.+.+++.. .
T Consensus 45 l~hy~~~~~v~----~~~e~f~~~L~----~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~-----------------~ 99 (369)
T 3ec1_A 45 LKHYNEVQDVP----LDDDDFLSMLH----RIGESKALVVNIVDIFDFNGSFIPGLPRFAAD-----------------N 99 (369)
T ss_dssp ------------------CHHHHHHH----HHHHHCCEEEEEEETTCSGGGCCSSHHHHCTT-----------------S
T ss_pred hhccccccCCc----CCHHHHHHHHH----HhhccCcEEEEEEECCCCCCchhhHHHHHhCC-----------------C
Confidence 99999988764 35667765432 23345789999999999998777777776532 2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
|+++|+||+||++.....+.+.+|++..++..|. ...+++.+||++++|+++|++.+.++. .+..++++|.+|+||||
T Consensus 100 piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL-CPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVGKST 177 (369)
T ss_dssp CEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC-CCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSSHHH
T ss_pred CEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC-CcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCchHH
Confidence 8999999999998766667888998887777664 234789999999999999999996655 34579999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|||+|++..... ....+++.+||||++...+. +.....++||||+...++..+.+...+++.+.+.+.
T Consensus 178 liN~L~~~~~~~----------~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 245 (369)
T 3ec1_A 178 FINRIIEEATGK----------GNVITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQMAHFVDARDLKIITPKRE 245 (369)
T ss_dssp HHHHHHHHHHHT----------TCCCEEEECTTSSCEEEEEE--CSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSC
T ss_pred HHHHHHhhccCC----------ccceeecCCCCeEEeeEEEE--eCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccc
Confidence 999999753111 12456788999999887764 455689999999997777888888888888888899
Q ss_pred hcCCccccCC
Q 015085 402 LKPRTYRIKV 411 (413)
Q Consensus 402 l~~~~~~l~~ 411 (413)
+.+..|.+++
T Consensus 246 i~~~~~~l~~ 255 (369)
T 3ec1_A 246 IHPRVYQLNE 255 (369)
T ss_dssp CCCEEEEECT
T ss_pred cCceEEEEcC
Confidence 9999999987
No 2
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=100.00 E-value=7.5e-40 Score=327.25 Aligned_cols=250 Identities=32% Similarity=0.611 Sum_probs=150.3
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||.+... ++ .+.++|||||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----------------------~~-------------------~~~~~C~Rc~~ 42 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASS-----------------------LE-------------------KEQVICQRCFR 42 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCChHH-----------------------cc-------------------CCCcEEhhhhh
Confidence 5899999999999999999996531 11 13699999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
++|||++..+. ++.+.|.+.+ ....+.+++|++|+|++|++.++...+.+++. + .
T Consensus 43 l~hy~~~~~v~----~~~e~f~~~l----~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~------------~-----~ 97 (368)
T 3h2y_A 43 LKHYNEIQDVS----LTDDDFLRIL----NGIGKSDALVVKIVDIFDFNGSWLPGLHRFVG------------N-----N 97 (368)
T ss_dssp -----------------CHHHHHHH----HHHHHSCCEEEEEEETTSHHHHCCTTHHHHSS------------S-----S
T ss_pred hhccCccccCC----CCHHHHHHHH----HHHhccCcEEEEEEECCCCcccHHHHHHHHhC------------C-----C
Confidence 99999987764 3456665433 23344678999999999976555555555432 2 3
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
|+++|+||+||++.....+.+.+|++..++..|. ...+++.+||++++|+++|++.|.++. .+..++++|.+|+||||
T Consensus 98 p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL-KPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKST 175 (368)
T ss_dssp CEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC-CCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHH
T ss_pred cEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCC-CcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhH
Confidence 8999999999998765667888998887777764 223789999999999999999996654 34578999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|+|+|++... |.. -...+++..||||++...+. +.....++||||+...++..+.+...+++.+.+.+.
T Consensus 176 liN~L~~~~~---~~~------~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 244 (368)
T 3h2y_A 176 FINRMIKEFS---DET------ENVITTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKE 244 (368)
T ss_dssp HHHHHHHHHT---TSC------SSCCEEECCC----CEEEEE--SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSC
T ss_pred HHHHHHhhhc---ccc------ccceecCCCCCeecceEEEE--ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccc
Confidence 9999997641 100 12456788999999887764 455689999999998788888899999988888899
Q ss_pred hcCCccccCC
Q 015085 402 LKPRTYRIKV 411 (413)
Q Consensus 402 l~~~~~~l~~ 411 (413)
+.+..|.+++
T Consensus 245 i~~~~~~l~~ 254 (368)
T 3h2y_A 245 IKPMVFQLNE 254 (368)
T ss_dssp CCCEEEEECT
T ss_pred cCceEEEEcC
Confidence 9999999987
No 3
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-18 Score=167.92 Aligned_cols=160 Identities=23% Similarity=0.323 Sum_probs=107.5
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS 256 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~ 256 (413)
+|.+. ....+.+.+.+..+|+|++|+|++++..+..+.+.+++. + +|+++|+||+||++.
T Consensus 6 ~PGhm--~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~------------~-----kp~ilVlNK~DL~~~- 65 (282)
T 1puj_A 6 FPGHM--AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK------------N-----KPRIMLLNKADKADA- 65 (282)
T ss_dssp ---CT--THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS------------S-----SCEEEEEECGGGSCH-
T ss_pred CchHH--HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHC------------C-----CCEEEEEECcccCCH-
Confidence 45542 124467778889999999999999988877777777663 2 289999999999853
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc-------------cCCcEEEEcCCCCcHHHHH
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-------------KRGNVWAIGAQNAGKSTLL 323 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~-------------~~g~~~~vG~ng~GKSTLi 323 (413)
...+.|...+ +..| ..++.+||.++.|+++|++.+.++.. ....++++|.+||||||||
T Consensus 66 ---~~~~~~~~~~-~~~g----~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsli 137 (282)
T 1puj_A 66 ---AVTQQWKEHF-ENQG----IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLI 137 (282)
T ss_dssp ---HHHHHHHHHH-HTTT----CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHH
T ss_pred ---HHHHHHHHHH-HhcC----CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHH
Confidence 4566776543 3333 26889999999999998887765432 1124777999999999999
Q ss_pred HHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 324 n~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
|+|.|.. ...++..||||++...+ .+.....++||||+..+
T Consensus 138 N~l~~~~---------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 138 NRLAKKN---------------IAKTGDRPGITTSQQWV--KVGKELELLDTPGILWP 178 (282)
T ss_dssp HHHHTSC---------------CC------------CCE--EETTTEEEEECCCCCCS
T ss_pred HHHhcCc---------------eeecCCCCCeeeeeEEE--EeCCCEEEEECcCcCCC
Confidence 9999533 23456778999876433 34556889999999754
No 4
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.71 E-value=6.4e-18 Score=160.85 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=100.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+...+..+|+|++|+|++++..+....+. ++ + ++.++|+||+||++. ...+.|..
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-------------~-----k~~iivlNK~DL~~~----~~~~~~~~ 69 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-------------R-----KETIILLNKVDIADE----KTTKKWVE 69 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-------------T-----SEEEEEEECGGGSCH----HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-------------C-----CCcEEEEECccCCCH----HHHHHHHH
Confidence 4566677889999999999998776554443 33 1 289999999999853 45667765
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~ 347 (413)
.+ +..| ..+ .+||.++.|+++|++.+.... ..++++|.+|+|||||||.|.+... .
T Consensus 70 ~~-~~~g----~~v-~iSa~~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~---------------~ 125 (262)
T 3cnl_A 70 FF-KKQG----KRV-ITTHKGEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRA---------------S 125 (262)
T ss_dssp HH-HHTT----CCE-EECCTTSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------------
T ss_pred HH-HHcC----CeE-EEECCCCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccc---------------c
Confidence 43 3344 247 899999999999988874432 3688899999999999999996432 1
Q ss_pred cccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 348 t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
.++..||+|.....+ .+.....++||||+..+
T Consensus 126 ~~~~~~g~T~~~~~~--~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 126 SVGAQPGITKGIQWF--SLENGVKILDTPGILYK 157 (262)
T ss_dssp ---------CCSCEE--ECTTSCEEESSCEECCC
T ss_pred ccCCCCCCccceEEE--EeCCCEEEEECCCcccC
Confidence 234567888765433 24456889999999854
No 5
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.68 E-value=1.1e-16 Score=158.23 Aligned_cols=187 Identities=17% Similarity=0.098 Sum_probs=109.0
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+...|+|++| |+.++..+ ...+.++|... +..++ ++++|+||+||++.. ....++.|+.. +
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~-~~~i~r~L~~a-------~~~~~-----~~iivlNK~DL~~~~-~~~~~~~~~~~-y 188 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELS-LNIIDRYLVGC-------ETLQV-----EPLIVLNKIDLLDDE-GMDFVNEQMDI-Y 188 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCC-HHHHHHHHHHH-------HHHTC-----EEEEEEECGGGCCHH-HHHHHHHHHHH-H
T ss_pred HHHHhcCCEEEEE-EeCCCCCC-HHHHHHHHHHH-------HhcCC-----CEEEEEECccCCCch-hHHHHHHHHHH-H
Confidence 3446778988854 67775444 34677776532 12244 789999999998642 11235667654 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc-CCCCCCcccccccccccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~v~~~t~ 349 (413)
+..| ..++++|+.++.|++.|...+ .+..+.++|+||||||||||+|+|... +..|.+........+.+.
T Consensus 189 ~~~G----~~v~~~Sa~~~~gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~ 259 (358)
T 2rcn_A 189 RNIG----YRVLMVSSHTQDGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT 259 (358)
T ss_dssp HTTT----CCEEECBTTTTBTHHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C
T ss_pred HhCC----CcEEEEecCCCcCHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE
Confidence 4444 358999999999988876543 222455599999999999999999998 888865532111111110
Q ss_pred ----cCCCCCeeeeEeec-------ccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC
Q 015085 350 ----APVPGTTLGIVRVE-------GVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP 404 (413)
Q Consensus 350 ----s~~pgtT~~~i~~~-------~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~ 404 (413)
..++... ..+..+ ..+.. ..++++..|+. ..++....|| |+++++++++++.+
T Consensus 260 ~~~i~~v~q~~-~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 260 AARLYHFPHGG-DVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp CCEEEECTTSC-EEEECHHHHTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred EEEEEEECCCC-EecCcccHHHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 0011000 000000 00000 11344444554 2466778899 99999999988743
No 6
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=6.4e-17 Score=156.99 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=105.1
Q ss_pred cccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccC
Q 015085 173 VENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252 (413)
Q Consensus 173 i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DL 252 (413)
++.++|+..... + ..+...|+|++|+|+.++..+.. .+.++|... +..++ ++++|+||+||
T Consensus 69 i~~i~~R~~~l~---R---~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~-------~~~~~-----~~vivlnK~DL 129 (307)
T 1t9h_A 69 LMEIKERTNELI---R---PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLV-------EANDI-----QPIICITKMDL 129 (307)
T ss_dssp EEEECCCSCEET---T---TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHH-------HTTTC-----EEEEEEECGGG
T ss_pred EEEEcchhhhhh---H---HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHH-------HHCCC-----CEEEEEECCcc
Confidence 444566655331 1 35778999999999998877765 677777532 12243 88999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCc
Q 015085 253 LPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 253 l~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.+.....+.++.|.+. ++..| .+++.+||.++.|+++|++.. .|+ +.++|+||||||||||+|+|...
T Consensus 130 ~~~~~~~~~~~~~~~~-y~~~g----~~v~~~sa~~~~g~~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 130 IEDQDTEDTIQAYAED-YRNIG----YDVYLTSSKDQDSLADIIPHF------QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp CCCHHHHHHHHHHHHH-HHHHT----CCEEECCHHHHTTCTTTGGGG------TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CchhhhHHHHHHHHHH-HHhCC----CeEEEEecCCCCCHHHHHhhc------CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 8651000235667543 34444 368999999999999887654 244 45599999999999999999998
Q ss_pred CCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHH
Q 015085 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREE 392 (413)
Q Consensus 332 ~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge 392 (413)
+..|.+........++ |.....+ .+. ...++|+||+...+ ...++.++
T Consensus 199 ~~~G~I~~~~~~G~~t--------t~~~~~~--~~~-~g~v~dtpg~~~~~--l~~lt~e~ 246 (307)
T 1t9h_A 199 LRTNEISEHLGRGKHT--------TRHVELI--HTS-GGLVADTPGFSSLE--FTDIEEEE 246 (307)
T ss_dssp ------------------------CCCCCEE--EET-TEEEESSCSCSSCC--CTTCCHHH
T ss_pred ccccceeeecCCCccc--------ccHHHHh--hcC-CEEEecCCCccccc--cccCCHHH
Confidence 8888654321122222 2211111 122 46899999997532 22455533
No 7
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.65 E-value=3.8e-16 Score=151.60 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=97.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|+|++|+|+.++..++. .+.+++.... ..++ |+++|+||+||.+.. .....++|.. .++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~-------~~~~-----~~ilV~NK~DL~~~~-~v~~~~~~~~-~~~ 139 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYE-------YFKV-----EPVIVFNKIDLLNEE-EKKELERWIS-IYR 139 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHH-------HTTC-----EEEEEECCGGGCCHH-HHHHHHHHHH-HHH
T ss_pred HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHH-------hCCC-----CEEEEEEcccCCCcc-ccHHHHHHHH-HHH
Confidence 35778999999999998755543 4556654321 1233 899999999997531 0011344432 334
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA 350 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s 350 (413)
..| ..++.+||+++.|+++|++.+. +.+ .++|+||||||||+|+|+ ...+.+|.+......+.++
T Consensus 140 ~~g----~~~~~~SA~~g~gi~~L~~~l~------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~--- 205 (302)
T 2yv5_A 140 DAG----YDVLKVSAKTGEGIDELVDYLE------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT--- 205 (302)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHTT------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C---
T ss_pred HCC----CeEEEEECCCCCCHHHHHhhcc------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc---
Confidence 444 3689999999999999987762 344 459999999999999999 9999999765322122222
Q ss_pred CCCCCeeeeEeeccccccccccccccccc
Q 015085 351 PVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 351 ~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
|.....+ .......++|+||+.
T Consensus 206 -----t~~~~~~--~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 206 -----TTGVRLI--PFGKGSFVGDTPGFS 227 (302)
T ss_dssp -----CCCEEEE--EETTTEEEESSCCCS
T ss_pred -----eeeEEEE--EcCCCcEEEECcCcC
Confidence 2111111 122456889999985
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.61 E-value=9e-16 Score=156.41 Aligned_cols=158 Identities=26% Similarity=0.293 Sum_probs=102.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~-----p~ilv~NK~D~~~~------ 125 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS----------TV-----DTILVANKAENLRE------ 125 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TC-----CEEEEEESCCSHHH------
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CC-----CEEEEEeCCCCccc------
Confidence 4455667777889999999999999876554455666666532 33 89999999998421
Q ss_pred HHHHH-HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc------C-------CcEEEEcCCCCcHHHHHHHHH
Q 015085 262 FEHWV-RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK------R-------GNVWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 262 l~~~~-~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~------~-------g~~~~vG~ng~GKSTLin~L~ 327 (413)
...-. .++. ..| +..++.+||++|.|+.+|++.|.+.... . -.+.++|.+|||||||+|+|+
T Consensus 126 ~~~~~~~~~~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 126 FEREVKPELY-SLG---FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp HHHHTHHHHG-GGS---SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cHHHHHHHHH-hcC---CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHh
Confidence 01111 1121 233 3467899999999999999888554321 1 156779999999999999999
Q ss_pred ccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 328 KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 328 g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
|.. ...++..+|||++.......+. ....++||+|+.
T Consensus 202 g~~---------------~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 202 NKE---------------RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239 (439)
T ss_dssp TST---------------TEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred CCc---------------ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence 643 1234677888887644322232 246789999985
No 9
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=4.6e-16 Score=158.43 Aligned_cols=159 Identities=24% Similarity=0.261 Sum_probs=100.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+......
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~----------~-----~pvilv~NK~D~~~~~~~--- 129 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT----------K-----KPVVLAVNKLDNTEMRAN--- 129 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC----------C-----SCEEEEEECCCC-----C---
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECccCccchhh---
Confidence 4455666677788899999999999886554455565555421 3 389999999998743111
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc---------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~---------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..+| . ..| +..++.+||++|.|+.+|++.+.+.... .-++.++|.+|||||||+|.|++..
T Consensus 130 ~~~~----~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~-- 199 (436)
T 2hjg_A 130 IYDF----Y-SLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-- 199 (436)
T ss_dssp CCSS----G-GGS---SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--
T ss_pred HHHH----H-HcC---CCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC--
Confidence 1111 1 122 3468899999999999999888665542 1257779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+...+... ....++||||+...
T Consensus 200 -------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 200 -------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 236 (436)
T ss_dssp -------------TEEEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred -------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence 1234567889987654332222 35789999998643
No 10
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.59 E-value=2.8e-15 Score=145.37 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=82.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+++...++ ..+.+++.... ..+ .|+++|+||+||.+.. ..++.++|...
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~-------~~~-----~piilv~NK~DL~~~~-~v~~~~~~~~~--- 142 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAE-------KNE-----LETVMVINKMDLYDED-DLRKVRELEEI--- 142 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHH-------HTT-----CEEEEEECCGGGCCHH-HHHHHHHHHHH---
T ss_pred cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHH-------HCC-----CCEEEEEeHHHcCCch-hHHHHHHHHHH---
Confidence 4567899999999999865443 34555554321 013 3899999999997431 01224445432
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+. . ..++.+||+++.|+++++..+. +..+.++|+||||||||||+|+|+..+++|.+.
T Consensus 143 -~~~-~-~~~~~~SAktg~gv~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 143 -YSG-L-YPIVKTSAKTGMGIEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp -HTT-T-SCEEECCTTTCTTHHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred -Hhh-h-CcEEEEECCCCcCHHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 221 1 3688999999999999987762 223455999999999999999999999998654
No 11
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.50 E-value=1.6e-14 Score=147.90 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=100.4
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~----------~-----~pvilV~NK~D~~~~~---~~ 149 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT----------K-----KPVVLAVNKLDNTEMR---AN 149 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC----------C-----SCEEEEEECC-----------
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc----------C-----CCEEEEEECccchhhh---hh
Confidence 4555666777788889999999999876655566666666532 3 3899999999986431 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++ . .. ++..++.+||+++.|+.+|++.+.+... ..-++.++|.+|+|||||+|.|++..
T Consensus 150 ~~e~----~-~l---g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~-- 219 (456)
T 4dcu_A 150 IYDF----Y-SL---GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-- 219 (456)
T ss_dssp -CCS----G-GG---SSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--
T ss_pred HHHH----H-Hc---CCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC--
Confidence 1111 1 12 2356789999999999999888765442 12356779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
...++..+|||.+.+...... .....++||||+...
T Consensus 220 -------------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 220 -------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp -------------TEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred -------------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 123456788888754322222 235689999998653
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.43 E-value=1.4e-13 Score=137.08 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=92.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+ ..+.+
T Consensus 4 l~~~~l~~~yg~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEeEEEEECCEEEEeee-EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4445566778878888888 88888888776 999999999999999999999999865332222 11111
Q ss_pred c--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1 233322 2333221110 0 012456666765 45788999999999999999999 78999999985
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.41 E-value=1.9e-13 Score=135.17 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=92.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------c
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~ 345 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+..|++|.+......+ .
T Consensus 5 l~i~~ls~~y~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDI-SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 3445566778878888888 88888888776 999999999999999999999999865332221 1
Q ss_pred ccccc--CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 346 HLTEA--PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 346 ~~t~s--~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+.+. -+|..| .+.+.+..... ....+++..|+. ..++.+..|||||+|||++||+| .|+.+.||
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22111 233322 33333221110 012456666775 45788999999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 164 EPt 166 (359)
T 3fvq_A 164 EPF 166 (359)
T ss_dssp STT
T ss_pred CCc
Confidence 985
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.38 E-value=5.2e-13 Score=131.97 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=92.6
Q ss_pred eEEEeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------cccc
Q 015085 280 KLHFVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHL 347 (413)
Q Consensus 280 ~V~~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~ 347 (413)
.+.+.+..+.| |...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGV-SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred eEEEEEEEEEEcCCCEEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE
Confidence 35556667778 766788888 78888888776 99999999999999999999999976533222 1222
Q ss_pred ccc--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+. -+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||++++|+| .|+.+.||+|
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 221 234322 3333321110 1 012456667775 35788999999999999999999 6899999998
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 173 ~ 173 (355)
T 1z47_A 173 F 173 (355)
T ss_dssp T
T ss_pred c
Confidence 5
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.38 E-value=5e-13 Score=132.30 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA 350 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s 350 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+.
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGV-SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEEEECCEEEEeee-EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 344555677766778888 78888888776 99999999999999999999999986533222 2222221
Q ss_pred --CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+..... ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 234423 34433321111 012456666775 35788999999999999999999 78999999985
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.38 E-value=3.4e-13 Score=128.40 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=89.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~ 347 (413)
+...+....|+...+++.+ ++....|+++. +|+||||||||+++|+|+++|++|.+......+. .+
T Consensus 12 l~~~~l~~~~~~~~vL~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDV-SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEeEEEEeCCeeEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 3445556677878888888 88888888776 9999999999999999999999998653322221 11
Q ss_pred ccc---CCCCCeeeeEeecccc-c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--------cCCccc
Q 015085 348 TEA---PVPGTTLGIVRVEGVL-P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--------KPRTYR 408 (413)
Q Consensus 348 t~s---~~pgtT~~~i~~~~~l-~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--------~~~~~~ 408 (413)
... ..+.|..+.+.+.... . ....+++..|+. ..++....|||||+||+++||+| .|+.+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 111 1122333333221100 0 012345556665 35678899999999999999999 578899
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
||+|.
T Consensus 171 lDEPt 175 (266)
T 4g1u_C 171 LDEPT 175 (266)
T ss_dssp ECCCC
T ss_pred EeCcc
Confidence 99884
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.37 E-value=5.3e-13 Score=132.29 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=90.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA 350 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s 350 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+..|++|.+...... +..+.+.
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNI-NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEEEESSSSEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEEeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 344556677766788888 78888888776 99999999999999999999999976533222 2222221
Q ss_pred --CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+... .. ...++++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 234322 333332111 00 012456667775 35788999999999999999999 68899999885
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.36 E-value=2.9e-13 Score=125.67 Aligned_cols=130 Identities=24% Similarity=0.209 Sum_probs=87.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------cc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VS 345 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~ 345 (413)
+......|+...+++.+ ++....|++++ +|+||||||||+++|+|+.+|++|.+...... +.
T Consensus 7 ~~~l~~~y~~~~~l~~v-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGI-SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG 85 (224)
T ss_dssp EEEEEEEETTEEEEEEE-EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred EEeEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence 33445667666788888 78888888776 99999999999999999999999975432211 22
Q ss_pred ccccc--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 346 HLTEA--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+... .++. |..+.+.+.... . ....+++..|+. ..++.+..||+||+||++++++| .|+.+.||
T Consensus 86 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 86 FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22221 1222 222333221100 0 012456666775 35688899999999999999999 68899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 166 EPt 168 (224)
T 2pcj_A 166 EPT 168 (224)
T ss_dssp STT
T ss_pred CCC
Confidence 885
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.36 E-value=7.1e-13 Score=131.94 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=89.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------- 344 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 344555677766788888 78888888776 999999999999999999999999765332221
Q ss_pred cccccc--CCCCCe-eeeEeecccc---cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEGVL---PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~~l---~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..+.+. -+|..| .+.+.+.... .. ...+++..|+. ..++.+..|||||+||++++|+| .|+.+.|
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 123322 2333221100 00 12456666775 35788999999999999999999 7899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 164 DEP~ 167 (372)
T 1g29_1 164 DEPL 167 (372)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 9986
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.35 E-value=5.9e-13 Score=132.40 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=90.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+ ..+.+
T Consensus 12 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEEEECCEEEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 4445566777766788888 78888888776 999999999999999999999999765332222 12221
Q ss_pred c--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|. |..+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 1233 222333221111 0 012456667775 35788999999999999999999 68999999985
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.34 E-value=2.1e-13 Score=134.54 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=88.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA-- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s-- 350 (413)
....+.||.. +++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+.
T Consensus 5 ~~l~~~y~~~-~l~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 5 ESLSRKWKNF-SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEEEECSSC-EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEEEECCE-EEeee-EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 3445667655 78888 78888888776 99999999999999999999999976533222 2222222
Q ss_pred CCCCCe-eeeEeecccc---c---cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVL---P---AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l---~---~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||++++|+| .|+.+.||+|+
T Consensus 83 l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 234423 3433321110 0 112456677775 35788999999999999999999 68999999985
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.33 E-value=6.1e-13 Score=131.67 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=83.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s--~~pg 354 (413)
..+++.+ ++...+|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+. -++.
T Consensus 41 ~~aL~~v-sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 41 IQALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT
T ss_pred eEEEEee-EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC
Confidence 3578888 88888888877 99999999999999999999999986533222 2222221 1233
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.+|+|.
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 223333221111 0 012456677775 45788999999999999999999 68889998874
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.33 E-value=8.7e-13 Score=130.45 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=89.1
Q ss_pred EeEEEeecCcch--hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------
Q 015085 283 FVSAVKNWGLKS--LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------- 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~--Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------- 344 (413)
+.+..+.||... +++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+
T Consensus 6 i~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEeEEEEECCEeeeeEece-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE
Confidence 334556666666 78888 78888888776 999999999999999999999999765332221
Q ss_pred cccccc--CCCC-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 345 SHLTEA--PVPG-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 345 ~~~t~s--~~pg-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..+.+. -+|. |..+.+.+..... ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.|
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111 1343 2233333321110 012456666775 35788999999999999999999 6899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 165 DEP~ 168 (353)
T 1oxx_K 165 DEPF 168 (353)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 9985
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.33 E-value=4.8e-13 Score=127.93 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=87.8
Q ss_pred EEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 282 HFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 282 ~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
.+......|+. ..+++.+ ++...+|++++ +|+||||||||+++|+|+++|++|.+...... +.
T Consensus 9 ~i~~ls~~y~~~~~~L~~i-sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 9 KVEELNYNYSDGTHALKGI-NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEECTTSCEEEEEE-EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEEECCCCeEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 34455566654 3478888 88888888776 99999999999999999999999976533221 12
Q ss_pred cccccC----CCCCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEAP----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+.+.+ +..|..+.+.+... ... ...+++..|+. ..++.+..||+||+||+++|++| .|+.+.|
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222211 12233333322110 000 12355666775 35788999999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (275)
T 3gfo_A 168 DEPT 171 (275)
T ss_dssp ECTT
T ss_pred ECcc
Confidence 9884
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.32 E-value=5.5e-13 Score=126.31 Aligned_cols=132 Identities=24% Similarity=0.322 Sum_probs=89.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~ 346 (413)
+.+......||...+++.+ ++....|++++ +|+||+|||||+|+|+|+++|++|.+...... +..
T Consensus 8 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEEEETTEEEEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEeeeEEEECCEeeEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 3444556677767788888 78888888776 99999999999999999999999976432211 112
Q ss_pred ccccC--CCC-CeeeeEeecccc----------------cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhh
Q 015085 347 LTEAP--VPG-TTLGIVRVEGVL----------------PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 347 ~t~s~--~pg-tT~~~i~~~~~l----------------~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r 400 (413)
+.+.. ++. |..+.+.+.... .. ...+++..|+. ..++.+..||+||+||+++|+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 21111 122 223333221100 00 12345566775 357888999999999999999
Q ss_pred hh--cCCccccCCCC
Q 015085 401 EL--KPRTYRIKVSL 413 (413)
Q Consensus 401 ~l--~~~~~~l~~~~ 413 (413)
+| .|+.+.||+|+
T Consensus 167 aL~~~p~lllLDEPt 181 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPI 181 (257)
T ss_dssp HHHTCCSEEEEESTT
T ss_pred HHHcCCCEEEEeCCc
Confidence 99 78999999985
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.32 E-value=6.4e-13 Score=125.59 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=88.0
Q ss_pred EeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCC-Cee
Q 015085 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPG-TTL 357 (413)
Q Consensus 283 ~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pg-tT~ 357 (413)
+......|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+.. ...+..+.... ++. |..
T Consensus 7 i~~l~~~y~~~~~vl~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQL-NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp EEEEEEEETTTTEEEEEE-EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-CSCEEEECSCCCCSSCCBHH
T ss_pred EeeEEEEeCCCCeEEEEE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-eccEEEEcCCCccCCCCCHH
Confidence 334455666 56678888 78778888776 9999999999999999999999997641 12233333221 222 333
Q ss_pred eeEeecccc--------cc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVL--------PA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l--------~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.... .. ...+++..|+. ..++....||+||+||+++|++| .|+.+.||+|+
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 443331100 00 12345566765 34678899999999999999999 78999999985
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=7.9e-13 Score=123.97 Aligned_cols=131 Identities=25% Similarity=0.283 Sum_probs=87.3
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~ 347 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+
T Consensus 8 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEeEEEEECCeeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 344455667766788888 78888888776 99999999999999999999999976432211 2222
Q ss_pred ccc--CCCC-CeeeeEeecc--cccc-c-----ccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 348 TEA--PVPG-TTLGIVRVEG--VLPA-Q-----AKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 348 t~s--~~pg-tT~~~i~~~~--~l~~-~-----~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
... .+++ |..+.+.+.. .... . ..+++.. |+. ..++....||+||+||++++++| .|+.+.||+|
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1234 3333333211 0000 0 1234444 464 34678899999999999999999 6889999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 167 t 167 (240)
T 1ji0_A 167 S 167 (240)
T ss_dssp T
T ss_pred c
Confidence 5
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.32 E-value=4.5e-13 Score=123.52 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=88.2
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------cccccccc--
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEA-- 350 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s-- 350 (413)
+.+......|+. .+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+...
T Consensus 11 l~~~~ls~~y~~-~il~~v-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEEEESSS-EEEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEEEeCC-eEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc
Confidence 445555667766 788888 77777887665 9999999999999999999999998653321 12222221
Q ss_pred CCCC-CeeeeEeecccc---c----ccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVL---P----AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l---~----~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++ |..+.+.+.... . ....+++..|+...++....||+||+||++++++| .|+.+.||+|+
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1233 223333221000 0 01234556666422677899999999999999999 68889999885
No 29
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.31 E-value=6e-13 Score=124.41 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=82.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||||||||+++|+|+++|++|.+...... +..+.+. .+++
T Consensus 19 ~~L~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 19 YALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 477887 78888888776 99999999999999999999999986532211 2222222 2344
Q ss_pred -CeeeeEeeccc------ccc------cccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV------LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~------l~~------~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... ... ...+++..|+.. .++.+..||+||+||+++||+| .|+.+.+|+|+
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 33343322100 000 124566667753 3788999999999999999999 68889999884
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.30 E-value=5.6e-13 Score=127.76 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=89.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
+.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+...... +.
T Consensus 22 l~~~~l~~~y~~~~vL~~i-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKI-SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEEEeEEEEECCEEEEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 3344556677767788888 78888888776 99999999999999999999999876533221 11
Q ss_pred cccccC---CCC--CeeeeEeeccc--------ccc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 346 HLTEAP---VPG--TTLGIVRVEGV--------LPA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 346 ~~t~s~---~pg--tT~~~i~~~~~--------l~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.+.... +.. |..+.+.+... ... ...+++..|+. ..++.+..||+||+||+++||+| .|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 121111 111 33333322100 000 12345666775 35688899999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 181 ~lLlLDEPt 189 (279)
T 2ihy_A 181 QVLILDEPA 189 (279)
T ss_dssp SEEEEESTT
T ss_pred CEEEEeCCc
Confidence 899999885
No 31
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.29 E-value=5.9e-13 Score=126.46 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=90.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------- 343 (413)
+.+......||...+++.+ ++....|++++ +|+||||||||+++|+|+++|++|.+......
T Consensus 7 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEeeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 3344555667766788888 88888888776 99999999999999999999999976432211
Q ss_pred ---------ccccccc--CCCC-CeeeeEeecc-c---ccc------cccccccccccC--CCCCCCCCCHHHHHHHHHh
Q 015085 344 ---------VSHLTEA--PVPG-TTLGIVRVEG-V---LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (413)
Q Consensus 344 ---------v~~~t~s--~~pg-tT~~~i~~~~-~---l~~------~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~ 399 (413)
+..+... .++. |..+.+.+.. . ... ...+++..|+.. .++.+..||+||+||+++|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 1112111 1233 2333333210 0 110 123566667753 5788999999999999999
Q ss_pred hhh--cCCccccCCCC
Q 015085 400 KEL--KPRTYRIKVSL 413 (413)
Q Consensus 400 r~l--~~~~~~l~~~~ 413 (413)
++| .|+.+.||+|+
T Consensus 166 raL~~~p~lllLDEPt 181 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPT 181 (262)
T ss_dssp HHHHTCCSEEEEESTT
T ss_pred HHHhcCCCEEEEeCCC
Confidence 999 78899999885
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.29 E-value=1.8e-12 Score=123.14 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=89.4
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
+.+......||...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +.
T Consensus 25 l~i~~l~~~y~~~~vL~~v-sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGI-NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 3444555667766788888 88888888776 99999999999999999999999976433221 11
Q ss_pred ccccc--CCCC-CeeeeEeecc----cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPG-TTLGIVRVEG----VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~----~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .++. |..+.+.+.. .... ...+++..|+. ..++.+..||+||+||+++|++| .|+.+.|
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 22111 1233 2233332210 0010 12355666775 35688899999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 184 DEPt 187 (263)
T 2olj_A 184 DEPT 187 (263)
T ss_dssp ESTT
T ss_pred eCCc
Confidence 9885
No 33
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.29 E-value=2e-12 Score=122.37 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=89.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t 348 (413)
+.+....+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.
T Consensus 16 l~i~~l~~~y~~~~vl~~v-sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEEEECCEEEEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 4455556677767788888 78888888776 99999999999999999999999976432211 22222
Q ss_pred cc--CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .+++.| .+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 21 123323 333322110 01 012355666775 34677899999999999999999 68899999885
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.28 E-value=2e-12 Score=123.48 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=85.8
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+......|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGL-TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEEEeCCCCCceeeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 444455566764 5678888 78888888776 99999999999999999999999986432211 2
Q ss_pred cccccc--CCCCCeeeeEeecccc-cc--c----------ccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL-PA--Q----------AKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l-~~--~----------~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... -+++|..+.+.+.... .. . ..+++.. |+. ..++....||+||+||++++|+| .|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 222221 1233434443321110 00 0 0122222 453 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 176 ~lllLDEPt 184 (271)
T 2ixe_A 176 RLLILDNAT 184 (271)
T ss_dssp SEEEEESTT
T ss_pred CEEEEECCc
Confidence 889999885
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.26 E-value=2.6e-12 Score=120.44 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=81.4
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVP 353 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~p 353 (413)
...||. .++.+ ++.... ++++ +|+||||||||+++|+|+.+|++|.+...... +..+... .++
T Consensus 8 ~~~y~~--~l~~i-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~ 83 (240)
T 2onk_A 8 EKRLGN--FRLNV-DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83 (240)
T ss_dssp EEEETT--EEEEE-EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCT
T ss_pred EEEeCC--EEeee-EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCC
Confidence 344542 36777 677777 7665 99999999999999999999999976432211 2222221 123
Q ss_pred C-CeeeeEeeccccc-------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP-------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~-------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ |..+.+.+..... ....+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|+
T Consensus 84 ~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred CCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3 2233332211110 012456667775 35688899999999999999999 68899999885
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.26 E-value=1.4e-11 Score=115.66 Aligned_cols=128 Identities=10% Similarity=0.183 Sum_probs=79.6
Q ss_pred EEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc
Q 015085 285 SAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA 350 (413)
Q Consensus 285 Sa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s 350 (413)
.....| +...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +..+...
T Consensus 6 ~l~~~y~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 84 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQD 84 (243)
T ss_dssp EEEECSSSSSCSEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCS
T ss_pred EEEEEeCCCCceEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCC
Confidence 344556 445678888 78788888766 99999999999999999999999986533211 1111111
Q ss_pred C--CCCCeeeeEeeccc--ccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 351 P--VPGTTLGIVRVEGV--LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 351 ~--~pgtT~~~i~~~~~--l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+ +++|..+.+.+... ... ...+++..|+.. .++....||+||+||+++||+| .|+.+.||
T Consensus 85 ~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD 164 (243)
T 1mv5_A 85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164 (243)
T ss_dssp SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 12222233322100 000 011122223321 1234578999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 165 EPt 167 (243)
T 1mv5_A 165 EAT 167 (243)
T ss_dssp CCS
T ss_pred CCc
Confidence 885
No 37
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.26 E-value=1.5e-12 Score=122.56 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=85.3
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+|.+......| +...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+...... +
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 45666666777 345678888 78888888776 99999999999999999999999976432211 1
Q ss_pred cccccc--CCCCCeeeeEeeccc-ccc--cccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGV-LPA--QAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~-l~~--~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .+++|..+.+.+... ... ...+++..|+ . ..++....||+||+||+++||+| .|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 122221 123333444332110 000 0011222222 2 12345689999999999999999 688
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 166 lllLDEPt 173 (247)
T 2ff7_A 166 ILIFDEAT 173 (247)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCc
Confidence 89999885
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.25 E-value=2.6e-12 Score=119.61 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=82.9
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCC
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGT 355 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgt 355 (413)
+.+......|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+.... .+..+...+ +++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~i~~v~q~~~~~~~t 84 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQFSWIMPGT 84 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-CEEEECSSCCCCSBC
T ss_pred EEEEEEEEEeCCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-EEEEEecCCcccCCC
Confidence 34445556663 35678888 78888888776 999999999999999999999999765332 222332221 2344
Q ss_pred eeeeEeecccccc--ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLPA--QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~~--~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+...... ...+.+..++. ..++....||+||+||+.+||+| .|+.+.||+|+
T Consensus 85 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 85 IKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 4444432111100 00111111211 11233579999999999999999 68899999885
No 39
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.25 E-value=1.8e-12 Score=123.37 Aligned_cols=120 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------cccccccc---CC-CCCeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------IVSHLTEA---PV-PGTTLG 358 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------~v~~~t~s---~~-pgtT~~ 358 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+... .+ ..|..+
T Consensus 20 ~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENV-SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred cceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence 4578887 78888888776 9999999999999999999999998643221 12222222 12 233344
Q ss_pred eEeeccc--ccc------ccccccccccc--C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGV--LPA------QAKLFDTPGLL--H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~--l~~------~~~liDtpGl~--~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+... ... ...+++..|+. . .++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 4433111 111 12356666774 2 4678899999999999999999 68899999885
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=120.43 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=81.5
Q ss_pred EeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC-CC-CCee
Q 015085 283 FVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP-VP-GTTL 357 (413)
Q Consensus 283 ~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~-~p-gtT~ 357 (413)
+......|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+.... .+..+...+ ++ .|..
T Consensus 6 ~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~~~~~tv~ 83 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-SVAYVPQQAWIQNDSLR 83 (237)
T ss_dssp EEEEEEESCTTSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-CEEEECSSCCCCSEEHH
T ss_pred EEEEEEEeCCCCCceeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEEEEcCCCcCCCcCHH
Confidence 334455665 35678888 78888888776 999999999999999999999988765332 222222221 11 2222
Q ss_pred eeEeeccccccc--------cccccccccc------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVLPAQ--------AKLFDTPGLL------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l~~~--------~~liDtpGl~------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+....... ..+.+..++. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 84 enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 84 ENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 333221111000 0111111111 12466789999999999999999 68999999985
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.19 E-value=3.5e-12 Score=120.26 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=79.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCcccccc-------------cccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~-------------v~~~ 347 (413)
......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..|++|.+...... +..+
T Consensus 7 ~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 85 (250)
T 2d2e_A 7 RDLWASIDGETILKGV-NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLA 85 (250)
T ss_dssp EEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCC
T ss_pred EeEEEEECCEEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEe
Confidence 3445566666788888 78888888776 999999999999999998 77888875432211 1111
Q ss_pred ccc--CCCCCee-eeEeecc----cc--c------cccccccccccc--CCCCCCCC-CCHHHHHHHHHhhhh--cCCcc
Q 015085 348 TEA--PVPGTTL-GIVRVEG----VL--P------AQAKLFDTPGLL--HPNQITTR-LTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 t~s--~~pgtT~-~~i~~~~----~l--~------~~~~liDtpGl~--~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~ 407 (413)
... .+++.|. +.+.+.. .. . ....+++..|+. ..++.+.. ||+||+||++++++| .|+.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp CCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEE
T ss_pred ccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 111 1233332 2222110 00 0 012345555762 34677788 999999999999999 78899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 166 lLDEPt 171 (250)
T 2d2e_A 166 VLDETD 171 (250)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 999874
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.18 E-value=3.9e-12 Score=127.23 Aligned_cols=132 Identities=16% Similarity=0.237 Sum_probs=85.0
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------ 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------ 344 (413)
.+.+.+..+.| |...+++.+ ++....|+++. +|+||||||||+++|+|+.. .+|.+......+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred eEEEEEEEEEecCCCeEEeece-eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 35566666777 566788888 88888888777 99999999999999999987 778754332222
Q ss_pred ccccccC--CCCCeeeeEeeccccc--cccccccccccc-CCCCCCCC-----------CCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLP--AQAKLFDTPGLL-HPNQITTR-----------LTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~--~~~~liDtpGl~-~~~~~~~~-----------LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.. ++.|..+.+....... ....+++..|+. ..++.... |||||+||+++||+| .|+.
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 1222211 2222223222110000 011344455554 23455555 999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|+
T Consensus 177 LLLDEPt 183 (390)
T 3gd7_A 177 LLLDEPS 183 (390)
T ss_dssp EEEESHH
T ss_pred EEEeCCc
Confidence 8888874
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.18 E-value=9.7e-12 Score=118.39 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCccccccc-------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIV------------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v------------- 344 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..|++|.+......+
T Consensus 21 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGL-SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 3444555667766788888 78888888776 999999999999999998 457778754322111
Q ss_pred cccccc--CCCCCee-eeEeecc-------cc---c------cccccccccccc--CCCCCCC-CCCHHHHHHHHHhhhh
Q 015085 345 SHLTEA--PVPGTTL-GIVRVEG-------VL---P------AQAKLFDTPGLL--HPNQITT-RLTREEQKLVNINKEL 402 (413)
Q Consensus 345 ~~~t~s--~~pgtT~-~~i~~~~-------~l---~------~~~~liDtpGl~--~~~~~~~-~LS~ge~q~v~i~r~l 402 (413)
..+... .+++.|. +.+.... .. . ....+++..|+. ..++.+. .||+||+||+++|++|
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 111111 1233221 2111100 00 0 012355666774 2456665 5999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 180 ~~~p~lLlLDEPt 192 (267)
T 2zu0_C 180 VLEPELCILDESD 192 (267)
T ss_dssp HHCCSEEEEESTT
T ss_pred HhCCCEEEEeCCC
Confidence 78999999985
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.18 E-value=5.6e-12 Score=119.77 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=78.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------ccc-cccccC-CCCCeeeeE
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------IVS-HLTEAP-VPGTTLGIV 360 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------~v~-~~t~s~-~pgtT~~~i 360 (413)
..+++.+ ++... |++++ +|+||+|||||+++|+|+. |++|.+..... .+. .+...+ +..|..+.+
T Consensus 18 ~~il~~v-sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENI-NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEE-EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHH
T ss_pred ceeEEee-eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHH
Confidence 4577887 77778 87666 9999999999999999999 99997643221 122 222211 111222333
Q ss_pred eecccc-c----cccccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVL-P----AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l-~----~~~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+...+ . ....+++..|+. . .++....||+||+||++++++| .|+.+.||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 221000 0 012345555664 2 4677899999999999999999 68899999985
No 45
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.17 E-value=1.2e-11 Score=119.89 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=83.5
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+-.....|+ ...+++.+ ++....|+++. +|+||+|||||+++|+|++.|.+|.+...... +..
T Consensus 54 i~~~~vs~~y~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDV-SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEE-EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred EEEEEEEEEcCCCCceeeee-eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 55555556663 35578888 78778887666 99999999999999999999999986533222 222
Q ss_pred cccc--CCCCCeeeeEeeccccccc---c---------ccc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGVLPAQ---A---------KLF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~l~~~---~---------~li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+.+. -+++|..+.+.+....... . .++ ..| |+. ........|||||+||+++||+| .|+.+
T Consensus 133 v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 133 VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp ECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 2222 1233334433321100000 0 011 112 332 12345578999999999999999 78999
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|.
T Consensus 213 lLDEPt 218 (306)
T 3nh6_A 213 LLDEAT 218 (306)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 999874
No 46
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.15 E-value=1.2e-11 Score=116.52 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=79.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCC-Cee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPG-TTL 357 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pg-tT~ 357 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|+ |.+...... +..+... .+++ |..
T Consensus 14 ~vl~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 567777 77777888766 9999999999999999999999 976533221 1122221 1233 223
Q ss_pred eeEeecccc--c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC-------ccccCCCC
Q 015085 358 GIVRVEGVL--P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPR-------TYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l--~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~-------~~~l~~~~ 413 (413)
+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+ .+.||+|+
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt 161 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence 333221000 0 012345566665 34677899999999999999999 678 88999885
No 47
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.09 E-value=2.3e-11 Score=115.36 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=79.9
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+......|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++++ +|.+...... +
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSI-NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred EEEEEEEEEeCCCCcCceeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 444455566654 2478887 78788888776 999999999999999999976 6875432211 1
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+...+ +++|..+.+.+... ... ...+++..|+.. .++....||+||+||+++||+| .|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 1221111 12222233322100 000 011122222210 1345678999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 176 lllLDEPt 183 (260)
T 2ghi_A 176 IVIFDEAT 183 (260)
T ss_dssp EEEEECCC
T ss_pred EEEEECcc
Confidence 99999885
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.05 E-value=7.7e-11 Score=122.76 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=75.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC---CCCeeeeEeecc--cccc----cc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV---PGTTLGIVRVEG--VLPA----QA 370 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~---pgtT~~~i~~~~--~l~~----~~ 370 (413)
++...+|++++ +|+||+|||||+++|+|+.+|++|.+......+........ ..+..+.+.... .... ..
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 33446677766 99999999999999999999999986543333333322221 122222221100 0000 12
Q ss_pred ccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 371 KLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 371 ~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|.
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 345556665 45688999999999999999999 68899999884
No 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.05 E-value=2.6e-11 Score=116.77 Aligned_cols=118 Identities=16% Similarity=0.252 Sum_probs=74.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+.... .+..+... .+++|..+.+. ......
T Consensus 51 ~~vl~~i-sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~l~~~tv~enl~-~~~~~~~ 127 (290)
T 2bbs_A 51 TPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQNSWIMPGTIKENII-GVSYDEY 127 (290)
T ss_dssp CCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-CEEEECSSCCCCSSBHHHHHH-TTCCCHH
T ss_pred ceEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EEEEEeCCCccCcccHHHHhh-CcccchH
Confidence 3567777 77778888776 999999999999999999999999765332 22233222 13444444433 111110
Q ss_pred -ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..|+. ..++....||+||+||+.+||+| .|+.+.||+|+
T Consensus 128 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 128 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 00111112221 01123478999999999999999 68889999885
No 50
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.00 E-value=1.6e-10 Score=121.70 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=84.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+..++.. +.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i-~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHV-SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420 (582)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE
Confidence 555556666753 4578888 77778887766 99999999999999999999999986533211 22
Q ss_pred cccccC--CCCCeeeeEeecc--cccc--cccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEG--VLPA--QAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~--~l~~--~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.+ +++|..+.+.+.. .... ....++..|+ . .-+.....|||||+||+.+||++ .|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ 500 (582)
T 3b5x_A 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500 (582)
T ss_pred EEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 222221 2444445444311 0000 0112222232 1 11234578999999999999999 688
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 501 illlDEpt 508 (582)
T 3b5x_A 501 VLILDEAT 508 (582)
T ss_pred EEEEECcc
Confidence 99999874
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.00 E-value=2.2e-10 Score=120.86 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=75.1
Q ss_pred eecCcc-hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc---------ccccccc---------c
Q 015085 288 KNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSH---------L 347 (413)
Q Consensus 288 ~~~Gi~-~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~---------~~~~v~~---------~ 347 (413)
+.||.. ..+..+ + ....|++++ +|+||+|||||+++|+|++.|++|.+.. ....+.. .
T Consensus 99 ~~yg~~~~~l~~v-s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 176 (607)
T 3bk7_A 99 HRYGVNAFVLYRL-P-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176 (607)
T ss_dssp EECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSC
T ss_pred EEECCCCeeeCCC-C-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhc
Confidence 445543 245556 3 456677666 9999999999999999999999997410 0000000 0
Q ss_pred ccc-----------CCCCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA-----------PVPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s-----------~~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... .+.++..+.+...........+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 177 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp CCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred ceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 000 00111111110000000112355566765 35688999999999999999999 78999999884
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.99 E-value=2.8e-10 Score=118.61 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=75.3
Q ss_pred EeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc---------cccccccc---------
Q 015085 287 VKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVSH--------- 346 (413)
Q Consensus 287 ~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~---------~~~~~v~~--------- 346 (413)
.+.||... .+..+ + ....|++++ +|+||+|||||+++|+|.+.|++|.+. .....+..
T Consensus 28 s~~yg~~~~~l~~v-s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 105 (538)
T 1yqt_A 28 VHRYGVNAFVLYRL-P-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105 (538)
T ss_dssp EEECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTS
T ss_pred EEEECCccccccCc-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHh
Confidence 34555432 45556 3 456677766 999999999999999999999999631 00000000
Q ss_pred cccc-------CC----CCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 347 LTEA-------PV----PGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 347 ~t~s-------~~----pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.... .. .++..+.+...........+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|
T Consensus 106 ~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185 (538)
T ss_dssp CCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 0000 00 011000000000000112355566765 35788999999999999999999 7899999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
.
T Consensus 186 T 186 (538)
T 1yqt_A 186 S 186 (538)
T ss_dssp T
T ss_pred c
Confidence 4
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.98 E-value=1.4e-10 Score=122.27 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=85.5
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+.+....|+ ...+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...... +
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGV-NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 356666666673 45678888 77778887666 99999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeeccccccc---------cc---cc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPAQ---------AK---LF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~~---------~~---li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.+ +++|..+.+.+....... .. ++ ..| |+. ..++....|||||+||+++||++ .|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 2222221 234444443321100000 00 11 112 443 12455678999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 500 illlDEpt 507 (587)
T 3qf4_A 500 VLILDDCT 507 (587)
T ss_dssp EEEEESCC
T ss_pred EEEEECCc
Confidence 99999874
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.98 E-value=2.3e-10 Score=119.22 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=67.8
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc-----------cccccccc---------cc---------c--C
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-----------EKNIVSHL---------TE---------A--P 351 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~-----------~~~~v~~~---------t~---------s--~ 351 (413)
..+|+++. +|+||+|||||+|+|+|++.|+.|.+.. ....+... .. . .
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 35677776 9999999999999999999999997621 00000000 00 0 0
Q ss_pred CCCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++..+.+...........+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|.
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0111000000000000112344555664 35688999999999999999999 68999999884
No 55
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.96 E-value=2e-10 Score=120.81 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=85.6
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+.. +
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeee-EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3555566666653 4578888 78778887766 99999999999999999999999986533221 2
Q ss_pred cccccc--CCCCCeeeeEeeccccccc---cccc----------ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVLPAQ---AKLF----------DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l~~~---~~li----------Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+. -+++|..+.+.+....... .... ..| |+. .-+.....|||||+||+++||++ +|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 222222 2345555554331110000 0011 112 332 12334568999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 498 illlDEpt 505 (578)
T 4a82_A 498 ILILDEAT 505 (578)
T ss_dssp EEEEESTT
T ss_pred EEEEECcc
Confidence 99999884
No 56
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=2.2e-10 Score=120.95 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=84.1
Q ss_pred eEEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 280 ~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
.+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+.. +.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDI-TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSE-EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCCCccccce-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 4666666667754 4577887 77778887766 99999999999999999999999986533222 22
Q ss_pred ccccc--CCCCCeeeeEeecccccc---cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA---QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~---~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+. -+++|..+.+.+...... .....+..++ .. -......|||||+||+++||++ .|+.
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 22222 234554554433110000 0111222222 10 0112267999999999999999 7889
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 513 lllDEpt 519 (598)
T 3qf4_B 513 LILDEAT 519 (598)
T ss_dssp EEECCCC
T ss_pred EEEECCc
Confidence 9999884
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.94 E-value=3.5e-10 Score=119.36 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCC-CeeeeEeec-c-ccc-c--ccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPG-TTLGIVRVE-G-VLP-A--QAK 371 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pg-tT~~~i~~~-~-~l~-~--~~~ 371 (413)
++....|++++ +|+||+|||||+++|+|+++|++|.+... ..+..+.... .+. |..+.+... . ... . ...
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 454 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 454 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 33446677766 99999999999999999999999986531 1222332221 122 222222110 0 000 0 123
Q ss_pred cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 55556664 34678899999999999999999 67899999884
No 58
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.93 E-value=5e-10 Score=117.90 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=85.5
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+..++.. +.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v-~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEcCCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 555666667763 4678888 77778887666 99999999999999999999999976533221 22
Q ss_pred ccccc--CCCCCeeeeEeecc--cccc--cccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEA--PVPGTTLGIVRVEG--VLPA--QAKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~--~l~~--~~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+. -+++|..+.+.+.. .... ....++.. |+. .-+.....|||||+||+.+||++ .|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 421 LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 22222 13454455544311 0000 01112222 222 12334578999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 501 illlDEpt 508 (582)
T 3b60_A 501 ILILDEAT 508 (582)
T ss_dssp EEEEETTT
T ss_pred EEEEECcc
Confidence 99999884
No 59
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.92 E-value=2.4e-10 Score=120.59 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+.+....|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+..++.. +
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~i-sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDF-SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEE-EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 666666667753 2478888 77778887766 99999999999999999999999976533221 2
Q ss_pred cccccc--CCCCCeeeeEeecccc----cc--cccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL----PA--QAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l----~~--~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+.+. -+++|..+.+.+.... .. ....++..|+ . ........|||||+||+++||++
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 222222 1344444544331111 00 0112222222 1 11233478999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|.
T Consensus 501 ~p~illlDEpt 511 (595)
T 2yl4_A 501 NPKILLLDEAT 511 (595)
T ss_dssp CCSEEEEECCC
T ss_pred CCCEEEEECcc
Confidence 78999999884
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.89 E-value=6.1e-10 Score=116.07 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCee-eeEeec--cccc---cccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTL-GIVRVE--GVLP---AQAK 371 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~-~~i~~~--~~l~---~~~~ 371 (413)
++...+|+++. +|+||+|||||+++|+|+.+|.+|.+... ..+..+.... .+..|. +.+... .... ....
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 384 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE 384 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 33446677766 99999999999999999999999976531 1222222221 122222 211110 0000 0123
Q ss_pred cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 56666664 34688899999999999999999 67889999884
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1e-09 Score=115.76 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=67.7
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---cccccc------------ccCC-----CCC-------
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---IVSHLT------------EAPV-----PGT------- 355 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---~v~~~t------------~s~~-----pgt------- 355 (413)
...|+++. +|+||+|||||+|+|+|++.|++|.+..... .+.... .... +..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 35677766 9999999999999999999999997631100 000000 0000 000
Q ss_pred eee-------eEeecccc--ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLG-------IVRVEGVL--PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~-------~i~~~~~l--~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+ .+...... .....+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 000 00000000 0112345556665 35788999999999999999999 68899999884
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.8e-09 Score=110.66 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=66.2
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc---CCCCCeeeeEeeccc--c-cc--cccccccccc
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA---PVPGTTLGIVRVEGV--L-PA--QAKLFDTPGL 378 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s---~~pgtT~~~i~~~~~--l-~~--~~~liDtpGl 378 (413)
++++ +|+||+|||||+++|+|+++|++|..... ..+..+... .++++..+.+..... . .. ...+++..|+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~-~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK-LNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCS-CCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccC-CcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 5555 99999999999999999999999852211 111111111 112222221110000 0 00 1124455566
Q ss_pred c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 379 L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 379 ~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ..++.+..|||||+||+++||+| .|+.+.||+|.
T Consensus 458 ~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 458 DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4 35788999999999999999999 68899999984
No 63
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.78 E-value=2.3e-10 Score=108.97 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=54.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC-------
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH------- 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~------- 380 (413)
.+.++|+||+|||||||+|+|...+.+|.+......+... ......+.+.....+.....++|++|+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 4677999999999999999999999988654322111100 00011111111111223456788887642
Q ss_pred ------------CCCCCCCCCHHHHHHHHHhhhhcCCccccCCC
Q 015085 381 ------------PNQITTRLTREEQKLVNINKELKPRTYRIKVS 412 (413)
Q Consensus 381 ------------~~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~~ 412 (413)
.+.....||+|++|++.++|++.. .|.|+++
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~-lllldep 122 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC-LYFISPT 122 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE-EEEECCC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee-eEEEecC
Confidence 122346899999999999998765 7777765
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.68 E-value=9.7e-09 Score=117.12 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=85.9
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------ 343 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------ 343 (413)
.|.+-.....|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+..
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGL-NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEE-EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 4666666677753 2478888 78778887666 99999999999999999999999976533322
Q ss_pred cccccccC--CCCCeeeeEeeccc-ccc-c----------cccc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEAP--VPGTTLGIVRVEGV-LPA-Q----------AKLF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s~--~pgtT~~~i~~~~~-l~~-~----------~~li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+.+.+ +++|..+.+.+... ... . ..++ ..| |+. ........|||||+||+++||+| .|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 22222222 34555555443110 000 0 0011 112 222 12344568999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|.
T Consensus 546 ~iliLDEpt 554 (1284)
T 3g5u_A 546 KILLLDEAT 554 (1284)
T ss_dssp SEEEEESTT
T ss_pred CEEEEECCC
Confidence 999999874
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.64 E-value=4.4e-08 Score=111.71 Aligned_cols=132 Identities=17% Similarity=0.289 Sum_probs=81.7
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------- 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------- 344 (413)
.+.+-.....|+.. .+++.+ ++...+|+++. +|+||+|||||+++|+|+++|.+|.+..+...+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~v-sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGL-SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSC-CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 35566666666532 477887 77778887666 999999999999999999999999765333222
Q ss_pred -ccccccC--CCCCeeeeEeecccc---cc-c----------ccccc-cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 -SHLTEAP--VPGTTLGIVRVEGVL---PA-Q----------AKLFD-TP-GLL-HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 -~~~t~s~--~pgtT~~~i~~~~~l---~~-~----------~~liD-tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+.+.+ +.+|..+.+.+.... .. . ..+++ .| |+. .-......|||||+||+++||+|
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 2222221 233433433221000 00 0 01111 11 221 11223467999999999999999
Q ss_pred cCCccccCCC
Q 015085 403 KPRTYRIKVS 412 (413)
Q Consensus 403 ~~~~~~l~~~ 412 (413)
.|+.+.||+|
T Consensus 1189 ~p~iLiLDEp 1198 (1284)
T 3g5u_A 1189 QPHILLLDEA 1198 (1284)
T ss_dssp CCSSEEEESC
T ss_pred CCCEEEEeCC
Confidence 7899999987
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.64 E-value=8.5e-09 Score=117.92 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=84.7
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------c
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------I 343 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~ 343 (413)
.|.+-++.-.|.. ..+++.+ ++..++|+.++ ||++|+|||||+++|+|.+.|.+|.+.-++. .
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~i-sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGM-NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEE-EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeece-EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 4777777777743 3478888 77777787655 9999999999999999999999997653332 2
Q ss_pred cccccccCC--CCCeeeeEeecccccccc-------------cccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQA-------------KLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s~~--pgtT~~~i~~~~~l~~~~-------------~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+.+.++ .||-++++.+.......- .+-..| |... -...-..|||||+||+++||++ .+
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 333333332 444455543311000000 011112 2211 1122356999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+++
T Consensus 574 ~IliLDE~t 582 (1321)
T 4f4c_A 574 KILLLDEAT 582 (1321)
T ss_dssp SEEEEESTT
T ss_pred CEEEEeccc
Confidence 899998874
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.62 E-value=1.9e-08 Score=110.61 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=81.3
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHc-cCcCCCCCCcccccccccccc---cCCCC
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAK-SVDAGRGGDGEEKNIVSHLTE---APVPG 354 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g-~~~~~~G~~~~~~~~v~~~t~---s~~pg 354 (413)
.+...+....||...+++.+ ++...+|++++ +|+||+|||||+++|+| .. .|........+..+.. ...+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~v-sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKT-QLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred eeEEeeEEEEECCEEeEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEcccccccccC
Confidence 46666777888877888888 88888888776 99999999999999984 22 1110000000011111 11122
Q ss_pred Ce-eeeEeecc--ccccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEG--VLPAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~--~l~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.... .......+++..|+. ..++....|||||+||+.++++| .|+.+.||+|+
T Consensus 511 ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp SBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred CcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 22 22221100 000112356666773 34678899999999999999999 78999999884
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.59 E-value=3.2e-08 Score=113.14 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=83.5
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------- 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------- 344 (413)
.|.+-+..-.|.. ..+++.+ ++..++|+.+ +||++|+|||||+++|++++.|.+|.+..++..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGL-SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEE-EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccce-eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4666666666632 2478888 7777777655 5999999999999999999999999865443222
Q ss_pred -ccccccC--CCCCeeeeEeeccccc-cc------c---------c-ccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh
Q 015085 345 -SHLTEAP--VPGTTLGIVRVEGVLP-AQ------A---------K-LFDTP-GLLH-PNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 345 -~~~t~s~--~pgtT~~~i~~~~~l~-~~------~---------~-liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l 402 (413)
..+.+.+ +.||-++++.+- ++ .. . . +-..| |+.. -...-..||+||+||+++||+|
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~g--ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYG--LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSS--SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCEeeCccHHHHHhcc--CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 2233332 355655555431 11 00 0 0 11122 2221 0122356999999999999999
Q ss_pred --cCCccccCCC
Q 015085 403 --KPRTYRIKVS 412 (413)
Q Consensus 403 --~~~~~~l~~~ 412 (413)
+++.+.||++
T Consensus 1233 lr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1233 VRNPKILLLDEA 1244 (1321)
T ss_dssp HSCCSEEEEESC
T ss_pred HhCCCEEEEeCc
Confidence 7888888875
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.59 E-value=6.6e-09 Score=114.20 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.9
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE 339 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~ 339 (413)
+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+..
T Consensus 674 v~nLs~~Y~g~~~~iL~dV-Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDI-NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp EEEEEECCTTCSSCSEEEE-EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEeeEEEeCCCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3444556643 4577777 77777887766 9999999999999999999999987643
No 70
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.52 E-value=5.9e-08 Score=85.94 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=63.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+... ...+..++... ..+. . ....|+++|+||+|+............|. +
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i-----~~~~-~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 148 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDT--FVKLDNWLNEL-----ETYC-T--RNDIVNMLVGNKIDKENREVDRNEGLKFA----R 148 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHH-----TTCC-S--CSCCEEEEEEECTTSSSCCSCHHHHHHHH----H
T ss_pred HHhccCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHhc-C--cCCCcEEEEEECCcCcccccCHHHHHHHH----H
Confidence 34567899999999987421 12233333221 0000 0 01248999999999965544444444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
..+ ..++.+||+++.|++++++.|.+........+--+..|+||||
T Consensus 149 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 149 KHS----MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred HcC----CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 333 3588999999999999999887765554445556778999997
No 71
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.51 E-value=3.2e-09 Score=104.97 Aligned_cols=73 Identities=32% Similarity=0.294 Sum_probs=47.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCCCCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~~~~~ 385 (413)
..+.++|.+|||||||+|.|++... .+...+++|.+........ .....++||||+.. ...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~ 229 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP----------------EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD--RPI 229 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC----------------EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSS--SCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCeeeceeEEEEEecCceEEEEeCCCccc--cch
Confidence 3567799999999999999986431 1233455555432211111 22468999999975 345
Q ss_pred CCCCHHHHHHHH
Q 015085 386 TRLTREEQKLVN 397 (413)
Q Consensus 386 ~~LS~ge~q~v~ 397 (413)
..++.++.+.+.
T Consensus 230 ~~~~~~~~~~~~ 241 (357)
T 2e87_A 230 SERNEIEKQAIL 241 (357)
T ss_dssp TTSCHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 678888877654
No 72
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.51 E-value=6.1e-08 Score=103.61 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=32.7
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCC--ccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR--TYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~--~~~l~~~~ 413 (413)
++..|+.. .++.+..|||||+||+.+||+| .|+ .+.||+|.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt 232 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 232 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 44456542 4688999999999999999999 455 89999984
No 73
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.3e-08 Score=102.08 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred hhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCC-C-Ccccc---cccccccccC-----CC-CCeeeeEeeccc---
Q 015085 301 DLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRG-G-DGEEK---NIVSHLTEAP-----VP-GTTLGIVRVEGV--- 365 (413)
Q Consensus 301 ~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G-~-~~~~~---~~v~~~t~s~-----~p-gtT~~~i~~~~~--- 365 (413)
++....|++ .++|+||+|||||+++|+|+..+.+| . +..+. ..+..+.... .+ .+..+.+ +...
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~ 210 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLTS 210 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBS
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccccc
Confidence 444455654 45999999999999999999988888 6 43221 1111111110 00 0111111 1000
Q ss_pred ----ccccccccccccccCCCCCCCCCCHHHHHHHHHhhh--h--cCCc----cccCC-C
Q 015085 366 ----LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE--L--KPRT----YRIKV-S 412 (413)
Q Consensus 366 ----l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~--l--~~~~----~~l~~-~ 412 (413)
......+++..|+..... ...||+|++||++++++ | .|+. +.||+ |
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred CcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 011234555566653322 67899999999999999 7 5667 88887 5
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.41 E-value=5.3e-09 Score=95.73 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+|...+++.+ ..|++++ +|+||+|||||+++|+|+ .|++|.+.
T Consensus 10 ~g~~~~l~~i-----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 10 LGQKHYVDAI-----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHHHHHH-----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HhHHHHHHhc-----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 3444455555 3456554 999999999999999999 99999764
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.41 E-value=2.6e-08 Score=100.19 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc-----
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL----- 379 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~----- 379 (413)
..+.+.++|+||||||||||+|+|+..+++|.+....... +. ...+... .......+.|+||+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~---t~-------~~~v~q~-~~~~~ltv~D~~g~~~~~~~ 136 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV---TM-------ERHPYKH-PNIPNVVFWDLPGIGSTNFP 136 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C-------CCEEEEC-SSCTTEEEEECCCGGGSSCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec---ce-------eEEeccc-cccCCeeehHhhcccchHHH
Confidence 3345666999999999999999999999999654222111 00 0111110 111233445555442
Q ss_pred -----------CCCCCCCCCCHH--HHHHHHHhhhhcC
Q 015085 380 -----------HPNQITTRLTRE--EQKLVNINKELKP 404 (413)
Q Consensus 380 -----------~~~~~~~~LS~g--e~q~v~i~r~l~~ 404 (413)
..+.... ||+| ++|++.++++|..
T Consensus 137 ~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp HHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHh
Confidence 1222223 8888 9999999999954
No 76
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.32 E-value=3.9e-07 Score=88.13 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=72.5
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCC-CCCC
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLL-PSSL 257 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl-~~~~ 257 (413)
..+.+.+.+.+...+..+|+|++|+|+.+.....+..+ .+.+... + .|+++|+||+|+. +.
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----------~-----~pvilV~NK~Dl~~~~-- 138 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----------N-----KPVIVVINKIDKIGPA-- 138 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----------C-----CCEEEEEECGGGSSSG--
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----------C-----CCEEEEEECccCCCCH--
Confidence 34556666777778888999999999987654333333 4444321 2 3899999999998 33
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
..+..+...+.+..+ .+..++.+||+++.|+++|++.|.+.....
T Consensus 139 --~~~~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 139 --KNVLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp --GGGHHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred --HHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 223344444444443 235799999999999999999997776543
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.26 E-value=3.2e-07 Score=81.66 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc---cCCCCCC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL---LHPNQIT 385 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl---~~~~~~~ 385 (413)
+.++|+||+|||||+++|+|.+...-. ........ ....+...+++.+.. .....++...+. ...++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~-----g~~~~~~~-~~~~~~~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI-----GFWTEEVR-DPETKKRTGFRIITT--EGKKKIFSSKFFTSKKLVGSYG 74 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE-----EEEEEEEC-------CCEEEEEET--TCCEEEEEETTCCCSSEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC-----CEEhhhhc-cccccceeEEEeecC--cHHHHHHHhhcCCccccccccc
Confidence 567999999999999999988731100 00000000 000011111111100 000001110011 1124556
Q ss_pred CCCCHHHHHHHHHhhh-----h--cCCccccCC
Q 015085 386 TRLTREEQKLVNINKE-----L--KPRTYRIKV 411 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~-----l--~~~~~~l~~ 411 (413)
..||+||+|++.++++ + .++.+.||+
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDE 107 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeC
Confidence 7799999999999995 5 678888888
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.23 E-value=1.7e-07 Score=82.63 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 386 TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...|+|++|++.+|+++ .|+.+.+|+|+
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt 111 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPE 111 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCH
Confidence 34589999999999999 57888888873
No 79
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.22 E-value=1.6e-06 Score=76.43 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+........+++|++|+|+.+........+.+++... + .|+++|+||+|+.... ......+..+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~i~v~nK~Dl~~~~-~~~~~~~~~~ 159 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------N-----IPFTIVLTKMDKVKMS-ERAKKLEEHR 159 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------T-----CCEEEEEECGGGSCGG-GHHHHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEEChhcCChH-HHHHHHHHHH
Confidence 3344445667999999999876544444555555432 2 3899999999998542 1122222233
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+...+ ...++.+||+++.|++++++.|.+..
T Consensus 160 ~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 160 KVFSKYG---EYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp HHHHSSC---CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhcC---CCceEEEecCCCCCHHHHHHHHHHHh
Confidence 3333222 24689999999999999999886544
No 80
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.22 E-value=1.2e-06 Score=79.38 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=61.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
........+|+|++|+|+.+........+.+++... + .|+++|+||+|+...... ......+.+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~----------~-----~p~i~v~nK~Dl~~~~~~-~~~~~~~~~ 171 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT----------G-----KPIHSLLTKCDKLTRQES-INALRATQK 171 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG----------C-----CCEEEEEECGGGSCHHHH-HHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEeccccCChhhH-HHHHHHHHH
Confidence 333445668899999999875443344455554421 2 389999999999853111 111111222
Q ss_pred HHHHc---CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 269 RARED---GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 269 ~~~~~---g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+... +......++.+||+++.|+++|++.|.+...
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 22221 1012357899999999999999999876554
No 81
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.17 E-value=3.4e-06 Score=74.55 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=57.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
......|++++|+|+.+........+.+++... + .|+++|+||+|+.... .+.....+..+
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~i~v~nK~Dl~~~~----~~~~~~~~~~~ 161 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY----------G-----IPVIVIATKADKIPKG----KWDKHAKVVRQ 161 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------T-----CCEEEEEECGGGSCGG----GHHHHHHHHHH
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECcccCChH----HHHHHHHHHHH
Confidence 334455999999999876443333444544321 2 3899999999998542 12221222222
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+......++.+||+++.|++++++.|.+.
T Consensus 162 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 162 TLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp HHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 1221123478999999999999999888544
No 82
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.16 E-value=1.9e-06 Score=83.01 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=69.7
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
..+.+.+...+...+..+|++++|+|+.+.....+..+.+.+... ..+ .|+++|+||+|+...
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~--------~~~-----~p~ilV~NK~Dl~~~---- 132 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL--------VGK-----VPILLVGNKLDAAKY---- 132 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGG--------TTT-----SCEEEEEECGGGCSS----
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhh--------cCC-----CCEEEEEECcccCCc----
Confidence 345555667777889999999999999876443344444444321 002 389999999999754
Q ss_pred HH-HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 260 TR-FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 260 ~~-l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.. +.++++.. ..+..++.+||+++.|+++|++.|......
T Consensus 133 ~~~~~~~~~~~------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 133 PEEAMKAYHEL------LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHT------STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHh------cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 22 33333322 134578999999999999999998765544
No 83
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.4e-06 Score=86.49 Aligned_cols=57 Identities=30% Similarity=0.301 Sum_probs=42.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.|.+||.+|||||||||+|++.. ..++.+|+||++.+.-.... +....++||||+..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~----------------~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE----------------SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC----------------CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC----------------CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 57889999999999999999532 23467899998775432222 33578999999974
No 84
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.10 E-value=7.8e-07 Score=77.82 Aligned_cols=106 Identities=18% Similarity=0.046 Sum_probs=62.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....+|.+++|+|+.+.. + ...+..++..... .... ...|+++|+||+|+... ....+....+. +
T Consensus 74 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~ 139 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIK-S-FEVIKVIHGKLLD-----MVGK---VQIPIMLVGNKKDLHMERVISYEEGKALA----E 139 (181)
T ss_dssp GTTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----HC-------CCEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred HHhcCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----hcCC---CCCCEEEEEECccchhcceecHHHHHHHH----H
Confidence 456789999999998742 1 1223333221100 0000 12389999999999644 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
..+ ..++.+||+++.|++++++.|.+..... -|..++||||
T Consensus 140 ~~~----~~~~~~Sa~~~~~v~~l~~~l~~~~~~~-----~~~~~~gkss 180 (181)
T 3t5g_A 140 SWN----AAFLESSAKENQTAVDVFRRIILEAEKM-----DGACSQGKSS 180 (181)
T ss_dssp HTT----CEEEECCTTSHHHHHHHHHHHHHHHHTC----------CCBSC
T ss_pred HhC----CcEEEEecCCCCCHHHHHHHHHHHHHHh-----cCCcccCcCC
Confidence 344 3688999999999999999887655443 2677888875
No 85
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.08 E-value=3.9e-06 Score=85.46 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=64.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCC-ChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL-SPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~-~~~~l~~~~~~ 268 (413)
....++.+|++++|+|+.+.....+..+.+++... ++ ++++|+||+|+..... ..+.+.+++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~----------~~-----~~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 335 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA----------GK-----AVVIVVNKWDAVDKDESTMKEFEENIRD 335 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT----------TC-----EEEEEEECGGGSCCCSSHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc----------CC-----CEEEEEEChhcCCCchHHHHHHHHHHHH
Confidence 34466778999999999885544444455444321 33 8999999999986532 22334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+... ....++.+||++|.|++++++.+.+..
T Consensus 336 ~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 336 HFQFL---DYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp HCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred hcccC---CCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 32222 235789999999999999999886544
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.03 E-value=2.7e-07 Score=89.08 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------cccccc---CCCC-CeeeeE
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------SHLTEA---PVPG-TTLGIV 360 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~~~t~s---~~pg-tT~~~i 360 (413)
..+|++++ +|+||||||||++.|+|.+.+..|.+....... ..+... ..|. +..+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 34566665 999999999999999999988877644221111 010000 0000 001111
Q ss_pred eecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhhc--CC--ccccC
Q 015085 361 RVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKELK--PR--TYRIK 410 (413)
Q Consensus 361 ~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l~--~~--~~~l~ 410 (413)
...........++|+.|+.. .++...+|| +|++.++|++. |+ .+.+|
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 11000111245789999863 345566777 78999999995 66 66665
No 87
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.03 E-value=8.7e-07 Score=94.67 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=28.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcC-----CccccCCCC
Q 015085 381 PNQITTRLTREEQKLVNINKELKP-----RTYRIKVSL 413 (413)
Q Consensus 381 ~~~~~~~LS~ge~q~v~i~r~l~~-----~~~~l~~~~ 413 (413)
.++.+..|||||+||+.+||+|.. +.+.||+|.
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 367889999999999999999953 478999884
No 88
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.02 E-value=2.3e-06 Score=72.91 Aligned_cols=91 Identities=23% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.+.....+..+|++++|+|+.+........+.+++... + .|+++|+||+|+.... +...++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~ilv~nK~Dl~~~~---~~~~~~ 130 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK----------G-----KPVILVATKVDDPKHE---LYLGPL 130 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH----------T-----CCEEEEEECCCSGGGG---GGCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc----------C-----CCEEEEEECcccccch---HhHHHH
Confidence 344455667889999999999885433334444444321 2 2899999999997431 122222
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
. ..+ ...++.+||+++.|++++++.+.+.
T Consensus 131 ----~-~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 131 ----Y-GLG---FGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----G-GGS---SCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ----H-hCC---CCCeEEEecccCCChHHHHHHHHHh
Confidence 1 222 2357899999999999999887543
No 89
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.99 E-value=2e-05 Score=72.01 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=58.2
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|++++|+|+.+...-.......++.... .. ....|+++|+||+|+..............+.+.+..
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~--------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIK--------SV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH--------TC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHH--------Hh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence 56779999999998754322222233332210 00 012389999999999865322222223333344433
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+ ....++.+||+++.|++++++.|.+..
T Consensus 176 ~--~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 K--NPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp C--SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred C--CCceEEEEecccCCCHHHHHHHHHHHH
Confidence 2 124689999999999999998885543
No 90
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.98 E-value=5.3e-06 Score=72.52 Aligned_cols=58 Identities=34% Similarity=0.420 Sum_probs=38.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|+|.+... ..++..+++|.+.......+. ....++||||+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREA---------------AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------ceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 577799999999999999996431 112445777765533222222 2467899999864
No 91
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.96 E-value=7.7e-06 Score=77.57 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=42.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
.+.++|.+|||||||+|.|+|.. ..++.+||+|.+.....+.. .....++||||+...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~----------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC----------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 57789999999999999999532 24567889988765433222 335679999999753
No 92
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.95 E-value=4.7e-06 Score=78.35 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=41.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||||.|+|.. ..++.+||+|.+.....+... ....++||||+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~----------------~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~ 60 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN----------------QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYS 60 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccc
Confidence 57789999999999999998532 234577899977654332222 3567999999964
No 93
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.95 E-value=1e-05 Score=81.92 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=60.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-hHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~-~~~l~~~~~~~ 269 (413)
...++.+|++++|+|+.+.....+..+...+.. .++ ++++|+||+|+...... .+.+.+.+.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~~~~~~~~~~~~~~-- 314 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----------AGK-----AVVIVVNKWDAVDKDESTMKEFEENIR-- 314 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----EEEEEEECGGGSCCCTTHHHHHHHHHH--
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH----------cCC-----cEEEEEECccCCCcchHHHHHHHHHHH--
Confidence 345667899999999998654333333333321 133 89999999999865321 122322222
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.........++.+||++|.|++++++.+.+..
T Consensus 315 -~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 315 -DHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp -HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -HhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 222111224689999999999999998886544
No 94
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.94 E-value=6.5e-06 Score=78.17 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=40.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||||.|+|.. ..++.+||+|.+.....+.......++||||...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~----------------~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN----------------QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS 61 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC----------------CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence 57779999999999999999632 1235678888765443222233577999999864
No 95
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.93 E-value=3.5e-06 Score=73.47 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+++.+ ++....|+++. +|+||+|||||+++|+|.+ +.+|.+.
T Consensus 21 ~~l~~v-sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 21 FAEILL-KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHH-HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHHhcc-ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 344455 66667787666 9999999999999999999 8888644
No 96
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.93 E-value=4.4e-06 Score=84.63 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=70.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.....+..+.+++.. .++ ++++|+||+|++.... ....++.+...+
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~----------~~~-----~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~ 321 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER----------RGR-----ASVVVFNKWDLVVHRE--KRYDEFTKLFRE 321 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----EEEEEEECGGGSTTGG--GCHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEECccCCCchh--hHHHHHHHHHHH
Confidence 44566899999999987543223333333322 133 8999999999986421 112223222222
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.........++.+||++|.|+++|++.+.+..... +.-=+|+.+|.+++..
T Consensus 322 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~--------~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 322 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY--------TTKVPSSAINSALQKV 372 (439)
T ss_dssp HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH--------TCCCCHHHHHHHHHHH
T ss_pred HhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh--------cccCCHHHHHHHHHHH
Confidence 22211234689999999999999999886544321 1112789999888543
No 97
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.92 E-value=6e-07 Score=88.67 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=60.7
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------ccccccC---CCC-CeeeeE
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------SHLTEAP---VPG-TTLGIV 360 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~~~t~s~---~pg-tT~~~i 360 (413)
..+|++++ +|+||||||||++.|+|++.+..|.+......+ ..+.... .|. +..+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 34566665 999999999999999999988877644221111 0110000 000 001111
Q ss_pred eecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhhc--CC--ccccC
Q 015085 361 RVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKELK--PR--TYRIK 410 (413)
Q Consensus 361 ~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l~--~~--~~~l~ 410 (413)
...........++|+.|+.. .++...+|| +|++.++|++. |+ .+.||
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 11000011235789999863 345566677 78999999985 66 66665
No 98
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.91 E-value=7.9e-06 Score=71.97 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=58.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch----HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFP----RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~----~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+...... ..+.+++... +.. ....|+++|+||+|+... ...+.+.++.
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--------~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~- 160 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--------GLT--LDDVPIVIQVNKRDLPDA-LPVEMVRAVV- 160 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--------TCC--TTSSCEEEEEECTTSTTC-CCHHHHHHHH-
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--------ccc--cCCCCEEEEEEchhcccc-cCHHHHHHHH-
Confidence 45678999999999985321111 2222333211 000 122489999999999654 3444454443
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ...++.+||+++.|++++++.|.+.
T Consensus 161 ---~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 161 ---DPEG---KFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp ---CTTC---CSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred ---HhcC---CceEEEEecCCCcCHHHHHHHHHHH
Confidence 2333 2368999999999999999887554
No 99
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.91 E-value=1.5e-05 Score=68.22 Aligned_cols=93 Identities=20% Similarity=0.129 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC----CCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS----SLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~----~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+.. + ...+..++..... .. . ...|+++|+||+|+... .........+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~-~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-- 137 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQ-S-FIKARHWVKELHE-----QA-S---KDIIIALVGNKIDXLQEGGERKVAREEGEKL-- 137 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----HS-C---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHH--
T ss_pred hhhccCcEEEEEEecCChH-H-HHHHHHHHHHHHH-----hc-C---CCCcEEEEEECCCccccccccCCCHHHHHHH--
Confidence 3456789999999998742 1 2233333322110 00 0 12389999999999754 1222233333
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 138 --~~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 138 --AEEKG----LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp --HHHHT----CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred --HHHcC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33334 3688999999999999998886543
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.90 E-value=4.9e-07 Score=87.23 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc-CcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS-VDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~-~~~~~G 335 (413)
++.++|+||||||||||+|+|. ..+.+|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 5678999999999999999987 666655
No 101
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.89 E-value=7.1e-06 Score=75.76 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=35.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|+|......+. ...++|.+.......+ .....++||||+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT--------------AAKSITKKCEKRSSSWKETELVVVDTPGIFD 90 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC--------------CCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence 57889999999999999999755332220 0113443332221112 23568999999864
No 102
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.87 E-value=1.7e-05 Score=69.93 Aligned_cols=110 Identities=20% Similarity=0.134 Sum_probs=58.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... ..+.. ...|+++|+||+|+.... ........| .
T Consensus 84 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 148 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQE-S-FNNVKQWLQEI-----DRYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEF----A 148 (196)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHH----H
T ss_pred HHHhhCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccccccccCHHHHHHH----H
Confidence 3456789999999998732 1 12233333221 00100 123899999999997653 222333333 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
+..+ ..++.+||+++.|++++++.|.+....... -.-+..|++||+
T Consensus 149 ~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~-~~~~~~~~~~s~ 194 (196)
T 3tkl_A 149 DSLG----IPFLETSAKNATNVEQSFMTMAAEIKKRMG-PGATAGGAEKSN 194 (196)
T ss_dssp HHTT----CCEEEECTTTCTTHHHHHHHHHHHHHHHC--------------
T ss_pred HHcC----CcEEEEeCCCCCCHHHHHHHHHHHHHHHhc-cccccCCCccCC
Confidence 3344 368899999999999998888665433211 113445666665
No 103
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.87 E-value=2.9e-05 Score=69.53 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=57.5
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+... ...+..++.... .... ...|+++|+||+|+............|. +.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 153 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERT--FTNIKQWFKTVN-----EHAN----DEAQLLLVGNKSDMETRVVTADQGEALA----KE 153 (213)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHHHHHHHHH-----HHTT----TCSEEEEEEECTTCSSCCSCHHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHH-----HhcC----CCCCEEEEEECCCCcccccCHHHHHHHH----HH
Confidence 4567899999999987421 122233332210 0000 1138999999999954444444444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 154 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 154 LG----IPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HT----CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33 2588999999999999988886543
No 104
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.86 E-value=9.1e-06 Score=78.27 Aligned_cols=59 Identities=37% Similarity=0.356 Sum_probs=40.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
+.+.++|.+|||||||+|.|++.. ...++..|+||++.+..... -.....++||||+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~---------------~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK---------------VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC---------------CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---------------eeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc
Confidence 467889999999999999999532 11234567788765432111 123567999999864
No 105
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.86 E-value=8.7e-06 Score=76.55 Aligned_cols=57 Identities=28% Similarity=0.301 Sum_probs=41.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|+|.. ..++.+||+|.+........ .....++||||...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~----------------~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~ 64 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK----------------QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 57789999999999999999532 22456789888765443222 23578999999864
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.86 E-value=8.5e-06 Score=70.47 Aligned_cols=57 Identities=30% Similarity=0.340 Sum_probs=34.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|.+... ..+..|++|.+........ .....++||||...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS----------------SCC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe----------------eccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 577799999999999999996431 1123455554432211111 23568999999864
No 107
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.85 E-value=1.4e-06 Score=84.01 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=32.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|++ +|.+
T Consensus 113 ~~vL~~v-sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I 154 (305)
T 2v9p_A 113 INALKLW-LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV 154 (305)
T ss_dssp HHHHHHH-HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred hhhhccc-eEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence 3566676 67777777665 9999999999999999998 5754
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.84 E-value=1e-05 Score=78.11 Aligned_cols=61 Identities=38% Similarity=0.405 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--cccccccccccccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLLH 380 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~~ 380 (413)
..|.+.++|.+|||||||+|.|+|.. ...++..++||++.+...... .....++||||+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~---------------~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK---------------VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC---------------CSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC---------------ccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 34678889999999999999999532 112456678887654432222 33577999999975
No 109
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.83 E-value=5.7e-06 Score=71.20 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=56.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ....+.... ..
T Consensus 70 ~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~nK~Dl~~~~-~~~~~~~~~---~~ 135 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRD-RI-GISKSELVAMLEEE---ELRK-----AILVVFANKQDMEQAM-TSSEMANSL---GL 135 (171)
T ss_dssp GGCTTCSEEEEEEETTCCT-TH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHH---TG
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhch---hhCC-----CEEEEEEECCCCcCCC-CHHHHHHHh---Cc
Confidence 4567899999999998753 22 22233322211000 0012 3899999999997542 222222221 11
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
......-..++.+||+++.|++++++.|.+..
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 10000112688999999999999998886544
No 110
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.83 E-value=2.3e-05 Score=69.21 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=58.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCC-CCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH-
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGK-SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR- 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k-~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~- 269 (413)
..+..+|++++|+|+.+.. + ...+.+++....... ...... .....|+++|+||+|+.... ....+...+...
T Consensus 82 ~~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~--~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~ 156 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHL-R-LCVVKSEIQAMLKHE--DIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTT 156 (199)
T ss_dssp GGCTTCSEEEEEEETTCGG-G-HHHHHHHHHHHHTSH--HHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHH
T ss_pred HHHhcCCEEEEEEECCcHH-H-HHHHHHHHHHHHhCh--hhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchh
Confidence 4567899999999998753 2 222333332211100 000000 00023899999999997552 223333332211
Q ss_pred H-HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 A-REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~-~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
. +..+ ..++.+||+++.|++++++.|.+..
T Consensus 157 ~~~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 157 LMGDHP----FVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHTTSC----EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hccCCe----eEEEEeeCCCccCHHHHHHHHHHHH
Confidence 1 1121 4688999999999999998886544
No 111
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.82 E-value=1.1e-05 Score=76.24 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=41.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|+|.. ..++.+||+|.+........ .....++||||...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR----------------QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC----------------EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 57789999999999999999542 13456788887764433222 23468999999874
No 112
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.82 E-value=9.4e-06 Score=75.72 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=34.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|++......+ ....++|.......... .....++||||+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~ 82 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSR--------------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccc--------------CCCCCccccEEEEEEEECCcEEEEEECCCCCC
Confidence 5788999999999999999964421111 11123454332221112 23568999999853
No 113
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.82 E-value=2.3e-05 Score=67.76 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+.. + ...+..++... ............|+++|+||+|+.......+.+..|.+.
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~- 144 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQ-S-FQNLSNWKKEF-----IYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD- 144 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-
T ss_pred HHHHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-
Confidence 345677899999999998743 1 12223332221 001000000123899999999997544444555555431
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.+.+..
T Consensus 145 --~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 --NGD----YPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp --TTC----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --cCC----ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 4689999999999999998886544
No 114
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.81 E-value=5.5e-05 Score=66.87 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC---CCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS---SLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~---~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+... ....+....+.
T Consensus 90 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~- 156 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRT-SF-DNISTKWEPEI-----KHYIDT-----AKTVLVGLKVDLRKDGSDDVTKQEGDDLC- 156 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----SEEEEEEECGGGCCTTTTCCCHHHHHHHH-
T ss_pred hhccCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhccCCCCcccHHHHHHHH-
Confidence 4567899999999998742 21 121 1222111 111112 389999999999753 23334444443
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+ ...++.+||+++.|++++++.|.+...
T Consensus 157 ---~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 157 ---QKLG---CVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp ---HHHT---CSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---HhcC---CCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3333 234889999999999999988865543
No 115
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.80 E-value=1.2e-05 Score=78.45 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=32.6
Q ss_pred hhccchhhhcccCC-cEEEEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 294 SLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g-~~~~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
.+++.+ ++....| .+.++|+||+|||||+++|+|++++.+|.+
T Consensus 159 ~~l~~l-~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i 202 (330)
T 2pt7_A 159 QAISAI-KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 202 (330)
T ss_dssp HHHHHH-HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred HHHhhh-hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence 355666 4444444 456699999999999999999998887743
No 116
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.80 E-value=1.4e-05 Score=76.95 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.+..++..+|++++|+|+.+ ....+..+.+.+... + .|+++|+||+|+... ...+.+++..
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~----------~-----~P~ilvlNK~D~~~~---~~~~~~~l~~ 141 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG----------K-----APVILAVNKVDNVQE---KADLLPHLQF 141 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS----------S-----SCEEEEEESTTTCCC---HHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc----------C-----CCEEEEEECcccCcc---HHHHHHHHHH
Confidence 34567788999999999987 333334444433311 2 389999999999741 2345455554
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+.+..+ +..++.+||+++.|+++|++.|......
T Consensus 142 l~~~~~---~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 142 LASQMN---FLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHTTSC---CSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHhcC---cCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 443333 3468999999999999999998766544
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.80 E-value=1.5e-05 Score=69.84 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=38.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|++.. ...+..|++|.+........ .....++||||...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN----------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCc
Confidence 57789999999999999999532 12234567766543222112 23467899999864
No 118
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.79 E-value=1.4e-05 Score=79.75 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.||||||||||+|+|.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5666999999999999999963
No 119
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.79 E-value=1.9e-05 Score=70.43 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+... ...+..++..... ..........|+++|+||+|+.......+....|...
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~-----~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--- 145 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNT--FKTLDSWRDEFLI-----QASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--- 145 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHH-----HHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---
T ss_pred HHHhCCcEEEEEEECCCHHH--HHHHHHHHHHHHH-----hcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---
Confidence 34567899999999987421 1222233221100 0000000013899999999998544444445544321
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 146 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 KNN----IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTS----CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCC----ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122 3689999999999999998886543
No 120
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.78 E-value=3.2e-06 Score=84.59 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=27.7
Q ss_pred hccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 295 LIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+++.+ ++....|-+.++|+||+||||||++|.++..
T Consensus 50 ~l~~v-~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQL-ELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEE-EEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeE-EEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 44555 5666777555599999999999999987764
No 121
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.75 E-value=2.3e-05 Score=80.33 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=57.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++|+|+|+.+.....+..+.+.+. + .|+++|+||+|+... ...+.+..+.
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~------------~-----~piivV~NK~DL~~~-~~~~~~~~~~-- 375 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIK------------N-----KRYLVVINKVDVVEK-INEEEIKNKL-- 375 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHT------------T-----SSEEEEEEECSSCCC-CCHHHHHHHH--
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhc------------C-----CCEEEEEECcccccc-cCHHHHHHHh--
Confidence 3445667799999999998754322222322221 2 289999999999753 2223333321
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ....++.+||+++.|+++|++.|.+.
T Consensus 376 -----~--~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 376 -----G--TDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp -----T--CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred -----c--CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 1 11358999999999999999988654
No 122
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.75 E-value=3.6e-06 Score=81.26 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
++++++ +|+||||||||++.|++++.+..|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 345554 999999999999999999998877643
No 123
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.74 E-value=1.8e-05 Score=68.50 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=54.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.... ...+.+... ...+ .|+++|+||+|+... ....+..++.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~---~~~~~l~~~-------~~~~-----~p~ilv~nK~Dl~~~--~~~~~~~~~~---- 132 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMP---QTVEAINHA-------KAAN-----VPIIVAINKMDKPEA--NPDRVMQELM---- 132 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCH---HHHHHHHHH-------GGGS-----CCEEEEEETTTSSCS--CHHHHHHHHT----
T ss_pred HHHhhCCEEEEEEECCCCCcH---HHHHHHHHH-------HhCC-----CCEEEEEECccCCcC--CHHHHHHHHH----
Confidence 345678999999998874322 222222211 0012 389999999999753 2233333321
Q ss_pred HcCCC--c---cceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGIS--K---ITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~--~---~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+.. . ...++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 133 EYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp TTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 11110 1 1368899999999999998887543
No 124
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.73 E-value=1.7e-05 Score=69.97 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=34.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++.++|.+|+|||||+|.|++... ....+..+|+|.+...+. .+....++||||+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKN--------------LARTSSKPGKTQTLNFYI--INDELHFVDVPGYGF 81 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--ETTTEEEEECCCBCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--------------ccccCCCCCceeeEEEEE--ECCcEEEEECCCCCc
Confidence 4688899999999999999995320 112234567776554432 344678999999753
No 125
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.72 E-value=1.8e-05 Score=76.19 Aligned_cols=58 Identities=33% Similarity=0.255 Sum_probs=37.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~ 379 (413)
+.+.++|.+|||||||+|+|+|... ..++..++||++.+..... -.....++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~---------------~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI---------------SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE---------------EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---------------cccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4577799999999999999996421 1124456777643221111 12346789999986
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=0.00011 Score=64.83 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=56.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... ..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 152 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPA-SF-QNVKEEWVPEL-----KEYAPN-----VPFLLIGTQIDLRDDPKTLARLNDMKEKPI 152 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred HhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhcccccchhhcccccCccc
Confidence 4567799999999998742 11 1222 222211 111112 389999999999753 12
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+....|. +..+ ...++.+||+++.|++++++.|.+.
T Consensus 153 ~~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 153 CVEQGQKLA----KEIG---ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CHHHHHHHH----HHHT---CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHH----HHcC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 223333333 3333 2368899999999999999887543
No 127
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.72 E-value=2.2e-05 Score=68.75 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=37.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|.|.+.. ...+..||+|.+...+. .. ...++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK----------------VRRGKRPGVTRKIIEIE--WK-NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC----------------CSSSSSTTCTTSCEEEE--ET-TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcC----------------CccCCCCCccceeEEEe--cC-CEEEEECCCcc
Confidence 57889999999999999999532 12234456665544442 22 57899999974
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.71 E-value=2.6e-05 Score=79.79 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
++....+..+|+|++|+|+.+...... ....+++... .+ .|+++|+||+|+.+.. ....+.+
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------~~-----~piIvV~NK~Dl~~~~--~~~~~~l- 366 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---------PA-----AKFLTVANKLDRAANA--DALIRAI- 366 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------TT-----SEEEEEEECTTSCTTT--HHHHHHH-
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------CC-----CCEEEEEECcCCCCcc--chhHHHH-
Confidence 445667889999999999998654211 1222333221 12 3899999999997652 1111111
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+ .+ ...++.+||+++.|+++|++.|.+...
T Consensus 367 ---~~-~~---~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 367 ---AD-GT---GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---HH-HH---TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---Hh-cC---CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 11 146899999999999999999866553
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.70 E-value=6.1e-05 Score=75.32 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred hhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH---
Q 015085 191 MSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV--- 266 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~--- 266 (413)
...+..+|++++|+|+.+.. .....+...++... +. +|+++|+||+|+... +....+.
T Consensus 93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~----------~~----~~iivviNK~Dl~~~----~~~~~~~~~i 154 (403)
T 3sjy_A 93 LSGAALMDGAILVVAANEPFPQPQTREHFVALGII----------GV----KNLIIVQNKVDVVSK----EEALSQYRQI 154 (403)
T ss_dssp HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------TC----CCEEEEEECGGGSCH----HHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc----------CC----CCEEEEEECccccch----HHHHHHHHHH
Confidence 34556789999999998753 22222222322221 21 389999999999753 2232222
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
++.++..+. ....++.+||+++.|+++|++.|.+..
T Consensus 155 ~~~l~~~~~-~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 155 KQFTKGTWA-ENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhhCC-CCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 222222221 124699999999999999999987644
No 130
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.70 E-value=5.5e-05 Score=64.69 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=57.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+... ...+..++.... ... . ...|+++|+||+|+.......+....+. +.
T Consensus 72 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 136 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERT--FTNIKQWFKTVN-----EHA-N---DEAQLLLVGNKSDMETRVVTADQGEALA----KE 136 (170)
T ss_dssp HHTTEEEEEEEEETTCHHH--HHTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCTTCCSCHHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHH-----Hhc-C---CCCcEEEEEECccCCcCccCHHHHHHHH----HH
Confidence 3457899999999987421 122333332210 000 0 1238999999999954444444444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 137 ~~----~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 137 LG----IPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HT----CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33 3588999999999999998886544
No 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.70 E-value=2.7e-05 Score=78.42 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred EeecCcchhccchhhhcccCCcE---EEEcCCCCcHHHHHHHHHccC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNV---WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~---~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+||... ++.+ ++....|.+ .++|+||+|||||||+|+|..
T Consensus 22 ~~~y~~~~-L~~v-sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP-DQLV-NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C-HHHH-HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee-cCCC-ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44555444 6666 677777875 459999999999999999874
No 132
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.69 E-value=1.3e-05 Score=71.74 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=21.1
Q ss_pred ccCCc-EEEEcCCCCcHHHHHHHHHccC
Q 015085 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 304 ~~~g~-~~~vG~ng~GKSTLin~L~g~~ 330 (413)
...+. +.++|++|||||||+|+|+|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 5669999999999999999754
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.69 E-value=3e-05 Score=70.22 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-------------CCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------------SSLS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-------------~~~~ 258 (413)
..+..+|++++|+|+.+.. ++...+..|+... .....+ .|+++|+||+|+.. ....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPE-TVDSALKKWRTEI-----LDYCPS-----TRVLLIGCKTDLRTDLSTLMELSHQKQAPIS 162 (214)
T ss_dssp GGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHH-----HHHCTT-----SEEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred HHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhccchhhhhhhcccccCccC
Confidence 4567899999999998742 2222123333221 011112 38999999999975 2233
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecC-cchhccchhhhc
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWG-LKSLIDDVVDLA 303 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~G-i~~Ll~~I~~l~ 303 (413)
.+....|.+ ..+ ...++.+||+++.| ++++++.+.+.+
T Consensus 163 ~~~~~~~~~----~~~---~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 163 YEQGCAIAK----QLG---AEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHHH----HHT---CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcC---CCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 444445443 333 23688999999998 999998886554
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.68 E-value=2e-05 Score=74.24 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=37.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|+|||||+|.|++... ..++..+++|.......... .....++||||+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERV---------------VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 577799999999999999996331 11234455555433322111 22478999999853
No 135
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.67 E-value=6.5e-05 Score=66.06 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=56.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++..... . .+ .|+++|+||+|+.......+.+.+|.+
T Consensus 112 ~~~~~~d~~i~v~D~~~~~-s-~~~~~~~~~~i~~-----~-~~-----~piilv~NK~D~~~~~~~~~~~~~~~~---- 174 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSN-T-LDRAKTWVNQLKI-----S-SN-----YIIILVANKIDKNKFQVDILEVQKYAQ---- 174 (208)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----H-SC-----CEEEEEEECTTCC-CCSCHHHHHHHHH----
T ss_pred HHhcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHh-----h-CC-----CcEEEEEECCCcccccCCHHHHHHHHH----
Confidence 3456789999999998742 1 2233333332100 0 12 389999999993223344455555543
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 175 ~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 175 DNN----LLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CcEEEEecCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999888543
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.67 E-value=1.9e-05 Score=71.39 Aligned_cols=60 Identities=28% Similarity=0.268 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc--ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV--LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~--l~~~~~liDtpGl~~ 380 (413)
-.+.++|.+|+|||||+|.|++... ...++..+|+|.+....... -.....++||||+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKR--------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSS--------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc--------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 3688899999999999999986421 11234567777765433211 123577999999754
No 137
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.67 E-value=4e-05 Score=67.55 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=55.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+.+++....... ...+ .|+++|+||+|+.... ....+.+. ...
T Consensus 86 ~~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~~-~~~~~~~~---~~~ 151 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQE-K-IEASKNELHNLLDKP---QLQG-----IPVLVLGNKRDLPGAL-DEKELIEK---MNL 151 (188)
T ss_dssp HHHTTCSEEEEEEETTCGG-G-HHHHHHHHHHHHTCG---GGTT-----CCEEEEEECTTSTTCC-CHHHHHHH---TTG
T ss_pred HHHccCCEEEEEEECCCHH-H-HHHHHHHHHHHHhCc---ccCC-----CCEEEEEECCCCccCC-CHHHHHHH---hCh
Confidence 3456789999999998742 2 223333332211000 0012 3899999999997542 22222211 110
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+..
T Consensus 152 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00001123578999999999999999886554
No 138
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.67 E-value=1.1e-05 Score=68.89 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... .. ...|+++|+||+|+.... ....+..+. ..
T Consensus 63 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~---~~ 128 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAED---EL-----RDAVLLVFANKQDLPNAM-NAAEITDKL---GL 128 (164)
T ss_dssp HHTTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GG-----TTCEEEEEEECTTSTTCC-CHHHHHHHT---TG
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhch---hh-----cCCeEEEEEECcCCcCCC-CHHHHHHHh---Cc
Confidence 4567899999999998752 22 22333332211000 00 123899999999996542 222222221 10
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+..
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 129 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 00000113588999999999999998886544
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.67 E-value=0.00012 Score=73.25 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=52.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. .....+...++... + .+++++|+||+|+..........+ .+++
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l----------~----~~~iivv~NK~Dl~~~~~~~~~~~-~i~~ 162 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL----------G----IDKIIIVQNKIDLVDEKQAEENYE-QIKE 162 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----------T----CCCEEEEEECTTSSCTTTTTTHHH-HHHH
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc----------C----CCeEEEEEEccCCCCHHHHHHHHH-HHHH
Confidence 345567889999999998753 21111212222111 2 137999999999986532112222 2223
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+++.... ....++.+||+++.|+++|++.|.+..
T Consensus 163 ~l~~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGTIA-ENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTSTT-TTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhcCC-CCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 3332211 124689999999999999999986644
No 140
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.67 E-value=6.4e-05 Score=82.45 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=30.9
Q ss_pred ccccc--CCCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 375 TPGLL--HPNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 375 tpGl~--~~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
..|+. ..++....|||||+||+.+||+|. ++.|.||+|.
T Consensus 791 ~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 791 DVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp HTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred HcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 34553 246788999999999999999995 3589999884
No 141
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.66 E-value=4.5e-05 Score=65.98 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++.... ....+ .|+++|+||+|+.... ........+ .
T Consensus 77 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 140 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAE-S-FVNVKRWLHEIN-----QNCDD-----VCRILVGNKNDDPERKVVETEDAYKF----A 140 (181)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHCTT-----SEEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhCCC-----CCEEEEEECCCCchhcccCHHHHHHH----H
Confidence 3456789999999998732 1 223333433221 01112 3899999999987542 222333333 2
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 141 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 141 GQMG----IQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp HHHT----CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999888554
No 142
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.66 E-value=0.00015 Score=62.70 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=58.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++.... .. .. ...|+++|+||+|+... ....+.+..|. +
T Consensus 81 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~--~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~ 145 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQA-S-FERAKKWVQELQ-----AQ--GN--PNMVMALAGNKSDLLDARKVTAEDAQTYA----Q 145 (181)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HH--SC--TTCEEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----Hh--cC--CCCcEEEEEECCcccccccCCHHHHHHHH----H
Confidence 456789999999998642 1 122333333211 00 10 12389999999999754 22334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 146 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 146 ENG----LFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HTT----CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HcC----CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333 3688999999999999999886554
No 143
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.66 E-value=2.8e-05 Score=73.55 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=33.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc---ccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA---QAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~---~~~liDtpGl~ 379 (413)
++.++|.+|+|||||+|+|++....... ....+....++++.+.........+ ...++||||+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPE--------YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccC--------CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 5778999999999999999864321111 0000111123344443333222222 46899999984
No 144
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.65 E-value=0.00016 Score=62.90 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=54.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++.... ... . ...|+++|+||+|+... ....+....|.+
T Consensus 76 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--- 141 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEK-S-FDNIRNWIRNIE-----EHA-S---ADVEKMILGNKCDVNDKRQVSKERGEKLAL--- 141 (183)
T ss_dssp TTTTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHS-C---TTCEEEEEEEC--CCSCCCSCHHHHHHHHH---
T ss_pred HHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----Hhc-C---CCCCEEEEEECccCCccCcCCHHHHHHHHH---
Confidence 4566789999999998742 2 223333433211 010 0 12389999999999754 333444555433
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 142 -~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 142 -DYG----IKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp -HHT----CEEEECCC---CCHHHHHHHHHHH
T ss_pred -HcC----CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
No 145
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.64 E-value=1.5e-05 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=56.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++..... .... .....|+++|+||+|+... ...+.+.+++.. .
T Consensus 86 ~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~--~ 154 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRL-R-MVVAKEELDTLLN-----HPDI-KHRRIPILFFANKMDLRDA-VTSVKVSQLLCL--E 154 (190)
T ss_dssp GGGGGCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----STTT-TTSCCCEEEEEECTTSTTC-CCHHHHHHHHTG--G
T ss_pred HHHhcCCEEEEEEECCCHH-H-HHHHHHHHHHHHh-----Chhh-ccCCCeEEEEEeCcCcccC-CCHHHHHHHhCh--h
Confidence 4456789999999998732 1 1222223222100 0000 0012389999999999753 233344443310 1
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... ....++.+||+++.|++++++.|.+..
T Consensus 155 ~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 155 NIKD-KPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp GCCS-SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hccC-CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1110 113688999999999999998886543
No 146
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.64 E-value=4.7e-05 Score=66.79 Aligned_cols=56 Identities=32% Similarity=0.364 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|..|||||||+|.|++... ...++.+|+|.+..... ......++||||+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~ 79 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKI---------------AFVSKTPGKTRSINFYL--VNSKYYFVDLPGYG 79 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCC---------------SCCCSSCCCCCCEEEEE--ETTTEEEEECCCBS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCcc---------------ccccCCCCCccCeEEEE--ECCcEEEEECCCCc
Confidence 3688899999999999999996431 12234566666544332 33457799999964
No 147
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.64 E-value=6e-05 Score=65.41 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-----------CCh
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-----------LSP 259 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-----------~~~ 259 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... ...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~v~~ 142 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKA-SY-ENVSKKWIPEL-----KHYAPG-----VPIVLVGTKLDLRDDKQFFIDHPGAVPITT 142 (182)
T ss_dssp GGGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CCEEEEEECHHHHTCHHHHHHC--CCCCCH
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEechhhhcCcccccccccCCCCCH
Confidence 4567789999999998632 11 1222 222211 111112 3899999999997541 112
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.....| .+..+ ...++.+||+++.|++++++.|.+.
T Consensus 143 ~~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 143 VQGEEL----KKLIG---APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHHHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH----HHHcC---CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 223333 33333 2368899999999999999888554
No 148
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.64 E-value=3.1e-05 Score=72.71 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=37.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||+|+|++... ..++..+++|.......... .....++||||+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV---------------VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC---------------SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 577899999999999999996331 12234455555443322122 22568999999853
No 149
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.63 E-value=2.1e-05 Score=68.65 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=55.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+........+...+... . ....|+++|+||+|+...... |.
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~----------~--~~~~p~ilv~NK~Dl~~~~~~------~~--- 135 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR----------L--PAKLPITVVRNKADITGETLG------MS--- 135 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH----------S--CTTCCEEEEEECHHHHCCCCE------EE---
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHh----------c--ccCCCEEEEEECccCCcchhh------hh---
Confidence 44556789999999999886543333232222211 0 011389999999998643110 10
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+. ....++.+||+++.|++++++.|.+..
T Consensus 136 -~~----~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 136 -EV----NGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp -EE----TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred -hc----cCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 00 114688999999999999999886554
No 150
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.62 E-value=6.4e-05 Score=67.33 Aligned_cols=91 Identities=25% Similarity=0.289 Sum_probs=55.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... .
T Consensus 97 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPA-SF-ENVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----CCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEechhhccchhhhhhhhccccccc
Confidence 4567899999999998742 11 1221 222211 111112 3899999999997541 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...... .+.+..+ ...++.+||++|.|++++++.|.+
T Consensus 165 ~~~~~~----~~~~~~~---~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 165 TYPQGL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CHHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cHHHHH----HHHHhcC---CcEEEEeeCCCCCCHHHHHHHHHH
Confidence 111222 2233333 245899999999999999988754
No 151
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.62 E-value=0.0001 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=59.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++.... ... . ...|+++|+||+|+... ....+.+.+|.
T Consensus 97 ~~~~~~d~iilv~D~~~~~-s-~~~~~~~~~~i~-----~~~-~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~---- 161 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRS-S-FLSVPHWIEDVR-----KYA-G---SNIVQLLIGNKSDLSELREVSLAEAQSLA---- 161 (201)
T ss_dssp HHHTTCSEEEEEEETTBHH-H-HHTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHHhhCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----Hhc-C---CCCCEEEEEECCccccccccCHHHHHHHH----
Confidence 4567799999999998642 1 122333332210 010 0 12389999999999753 33344454443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ...++.+||+++.|++++++.|.+..
T Consensus 162 ~~~~---~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 162 EHYD---ILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp HHTT---CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 23689999999999999998886543
No 152
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.61 E-value=2.6e-05 Score=77.79 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
..+.++|.+|||||||||+|++.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46888999999999999999964
No 153
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.61 E-value=2.1e-05 Score=85.50 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.9
Q ss_pred ccccccC--CCCCCCCCCHHHHHHHHHhhhhcC-----CccccCCCC
Q 015085 374 DTPGLLH--PNQITTRLTREEQKLVNINKELKP-----RTYRIKVSL 413 (413)
Q Consensus 374 DtpGl~~--~~~~~~~LS~ge~q~v~i~r~l~~-----~~~~l~~~~ 413 (413)
+..|+.. .++.+..|||||+||+.+|++|.. +.|.||+|.
T Consensus 715 ~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 715 REVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred HHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 3345543 367889999999999999999965 789999884
No 154
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.61 E-value=8.9e-05 Score=65.06 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=58.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.......+.+.++.+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---- 153 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSK-S-FADINLYREQI-----KRVKDS---DDVPMVLVGNKCDLPTRTVDTKQAHELAK---- 153 (190)
T ss_dssp --CTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHHH----
T ss_pred HhhCcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHHhCC---CCCeEEEEEECCcCCcccCCHHHHHHHHH----
Confidence 4567799999999998743 1 22233333221 111110 11389999999999865444455555443
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 154 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 SYG----IPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp HHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333 2589999999999999998885543
No 155
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.61 E-value=0.00015 Score=64.27 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=55.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CCC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~~ 258 (413)
.+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... ...
T Consensus 88 ~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPS-SF-QNVSEKWVPEI-----RCHCPK-----APIILVGTQSDLREDVKVLIELDKCKEKPVP 155 (201)
T ss_dssp GGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----SCEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred hcCCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEECHhhhhchhhhhhhcccccccCC
Confidence 466789999999998742 11 2222 222211 111112 389999999999752 122
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+....|. +..+ ...++.+||+++.|++++++.|.+.
T Consensus 156 ~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 156 EEAAKLLA----EEIK---AASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHHHHHHH----HHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHH----HhcC---CcEEEEEecCCCCCHHHHHHHHHHH
Confidence 23333332 2333 2368899999999999999887543
No 156
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=1.6e-05 Score=69.92 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=57.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ..+.+.+++... .
T Consensus 80 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~~-~~~~i~~~~~~~--~ 146 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRE-RI-SVTREELYKMLAHE---DLRK-----AGLLIFANKQDVKECM-TVAEISQFLKLT--S 146 (187)
T ss_dssp HHTTCCEEEEEEETTCTT-TH-HHHHHHHHHHHTSG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHHTGG--G
T ss_pred HhcCCCEEEEEEeCCCHH-HH-HHHHHHHHHHHhch---hhCC-----CeEEEEEECCCCcCCC-CHHHHHHHhChh--h
Confidence 456789999999998853 22 23333332211000 0012 3899999999997532 233333332110 0
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
... .-..++.+||+++.|++++++.|.+..
T Consensus 147 ~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 147 IKD-HQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CCS-SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcC-CCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 110 113688999999999999999886554
No 157
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.61 E-value=0.00014 Score=62.08 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=57.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++..... . .. ...|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~--~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEE-S-FARAKNWVKELQR-----Q--AS--PNIVIALSGNKADLANKRAVDFQEAQSYA---- 138 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----H--SC--TTCEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----h--cC--CCCcEEEEEECccCccccccCHHHHHHHH----
Confidence 3456789999999998742 1 2233333332110 0 00 12389999999999753 22333444433
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 139 ~~~~----~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 139 DDNS----LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHTT----CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3688899999999999999886544
No 158
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.61 E-value=0.00022 Score=63.18 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-C-CCChHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-S-SLSPTRFEHWV 266 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~-~~~~~~l~~~~ 266 (413)
.....+..+|++++|+|+.+.. + ...+..++... ....... ....|+++|+||+|+.. . ....+....|.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~~-~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSME-S-FESCKAWFELL-----KSARPDR-ERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHCSCT-TSCCEEEEEEECC-------CCCHHHHHHHH
T ss_pred HHHHHHhhCcEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhccc-ccCCcEEEEEECcccchhhccCCHHHHHHHH
Confidence 3456678899999999998743 1 22333333321 1111000 01238999999999976 3 33334454443
Q ss_pred HHHHHHcCCCccceEEEeEEEe-ecCcchhccchhhh
Q 015085 267 RQRAREDGISKITKLHFVSAVK-NWGLKSLIDDVVDL 302 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~-~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||++ +.|++++++.|.+.
T Consensus 161 ----~~~~----~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 161 ----TTNT----LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp ----HHTT----CEEEECCC-------CHHHHHHHHH
T ss_pred ----HHcC----CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 3343 3688999999 99999999888554
No 159
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.61 E-value=3.2e-05 Score=67.42 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=56.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+.+++.... .+... ...|+++|+||+|+... ....+....+. +.
T Consensus 87 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~---~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~ 152 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKA-S-FEHVDRFHQLIL-----RVKDR---ESFPMILVANKVDLMHLRKVTRDQGKEMA----TK 152 (183)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHTS---SCCCEEEEEECTTCSTTCCSCHHHHHHHH----HH
T ss_pred HhcCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcCC---CCCcEEEEEECCCchhccCcCHHHHHHHH----HH
Confidence 33579999999998742 1 122233322110 00001 12389999999999753 33344444443 33
Q ss_pred cCCCccceEEEeEEE-eecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAV-KNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+ ++.|++++++.|.+.
T Consensus 153 ~~----~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 153 YN----IPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HT----CCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred hC----CeEEEeccCCCCCCHHHHHHHHHHH
Confidence 33 358899999 999999999888554
No 160
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.60 E-value=3.5e-05 Score=67.46 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=55.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+... .....+.+++.. .
T Consensus 84 ~~~~~~d~ii~v~D~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~-~~~~~i~~~~~~--~ 150 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRE-RI-SVTREELYKMLAHE---DLRK-----AGLLIFANKQDVKEC-MTVAEISQFLKL--T 150 (181)
T ss_dssp GGGTTCCEEEEEEETTCTT-TH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTC-CCHHHHHHHTTG--G
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhCh---hhCC-----CeEEEEEECCCcccC-CCHHHHHHHhCc--c
Confidence 4567789999999998753 32 23333332211000 0012 389999999999753 223333333210 0
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
... ..-..++.+||+++.|++++++.|.
T Consensus 151 ~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 151 SIK-DHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp GCC-SSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccc-CCceEEEEccCCCCcCHHHHHHHHH
Confidence 000 0112688999999999999998774
No 161
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.60 E-value=0.0001 Score=64.03 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=56.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... .
T Consensus 72 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 139 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPA-SF-ENVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139 (186)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----SCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HhccCCcEEEEEEECCChh-hH-HHHHHHHHHHH-----HHhCCC-----CCEEEEeEcccccccchhhhhhcccccccC
Confidence 3567899999999998732 11 1221 122211 011112 3899999999997531 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+...
T Consensus 140 ~~~~~~~----~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 140 TYPQGLA----MAKEIG---AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CHHHHHH----HHHhcC---CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 1122222 233333 236899999999999999988866543
No 162
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=2.3e-05 Score=77.29 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.+|||||||||+|++.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5778999999999999999963
No 163
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.60 E-value=0.00011 Score=63.43 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... .... . ...|+++|+||+|+... ....+.+.+|.
T Consensus 83 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 147 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRS-T-YNHLSSWLTDA-----RNLT-N---PNTVIILIGNKADLEAQRDVTYEEAKQFA---- 147 (179)
T ss_dssp HHHHTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS-C---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEeCcCHH-H-HHHHHHHHHHH-----HHhc-C---CCCcEEEEEECcccccccccCHHHHHHHH----
Confidence 3456789999999998742 1 12233333221 0011 0 12389999999999743 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 148 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 148 EENG----LLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp HHTT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999887554
No 164
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.59 E-value=0.00017 Score=72.91 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=55.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC-------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH--
Q 015085 190 LMSASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT-- 260 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~-------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~-- 260 (413)
....+..+|++++|||+.+..+ ....+...++.. .+. +++++|+||+|+........
T Consensus 112 ~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------~~v----~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------AGV----KHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----------cCC----CeEEEEeecCCCcccchHHHHH
Confidence 3445667999999999987643 112222222221 132 24999999999964321122
Q ss_pred -HHHHHHHHHHHHcCCCc--cceEEEeEEEeecCcchhcc
Q 015085 261 -RFEHWVRQRAREDGISK--ITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 261 -~l~~~~~~~~~~~g~~~--~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
.+.+.+..+++..|... ...++.+||++|.|+.++.+
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22233333444454321 23689999999999988654
No 165
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.59 E-value=0.00011 Score=62.87 Aligned_cols=92 Identities=25% Similarity=0.223 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|.+++|+|+.+.. + ...+..++.... .. ...+ .|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-~~---~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDED-S-FQKVKNWVKELR-KM---LGNE-----ICLCIVGNKIDLEKERHVSIQEAESYA---- 138 (170)
T ss_dssp CSSTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-HH---HGGG-----SEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEECcCHH-H-HHHHHHHHHHHH-Hh---cCCC-----CeEEEEEECcccccccccCHHHHHHHH----
Confidence 4567889999999998742 1 223333333210 00 1112 389999999999753 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 139 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 139 ESVG----AKHYHTSAKQNKGIEELFLDLCKR 166 (170)
T ss_dssp HHTT----CEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999888554
No 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.59 E-value=8e-05 Score=63.08 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.+.........++. +..
T Consensus 72 ~~~~~~~i~v~d~~~~~-~-~~~~~~~~~~i-----~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~ 137 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTK-S-FEDIHQYREQI-----KRVKDS---DDVPMVLVGNKSDLAARTVESRQAQDLA----RSY 137 (166)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEEchhhhhcccCHHHHHHHH----HHc
Confidence 34579999999988642 1 12233333221 111110 1238999999999987544444444443 333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~----~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 138 G----IPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp T----CCEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3 358999999999999999888544
No 167
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.59 E-value=0.00012 Score=65.90 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+... ...+..++... .........|+++|+||+|+... .........|.
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i--------~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-- 168 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQL--------QANAYCENPDIVLIGNKADLPDQREVNERQARELA-- 168 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTC--------CCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred HHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHH--------HHhcCcCCCCEEEEEECCccccccccCHHHHHHHH--
Confidence 3455678999999999987321 22333343321 00000012489999999999753 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 169 --~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 169 --DKYG----IPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp --HHTT----CCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred --HHCC----CcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 358899999999999998887543
No 168
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.59 E-value=0.00017 Score=64.18 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=55.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+.... .
T Consensus 92 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 159 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPD-SL-ENIPEKWTPEV-----KHFCPN-----VPIILVGNKKDLRQDEHTRRELAKMKQEPV 159 (201)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECGGGTTCHHHHHHHHTTTCCCC
T ss_pred HhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEecHHhhcCccchhhhcccccCcC
Confidence 3567899999999998632 11 112 1222111 111112 3899999999997641 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+.
T Consensus 160 ~~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 160 RSEEGRD----MANRIS---AFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHH----HHHhCC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1112222 233333 2368899999999999999887543
No 169
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=0.0001 Score=63.82 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=58.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+... ...+.+++... ..... ...|+++|+||+|+.... ...+....|.
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 143 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKAS--FDNIQAWLTEI-----HEYAQ----HDVALMLLGNKVDSAHERVVKREDGEKLA--- 143 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHSC----TTCEEEEEEECCSTTSCCCSCHHHHHHHH---
T ss_pred HHHccCCCEEEEEEECCCHHH--HHHHHHHHHHH-----HHhCC----CCCcEEEEEECcccCcccccCHHHHHHHH---
Confidence 345667899999999987421 12233333221 00110 123899999999998642 2333444443
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 144 -~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 144 -KEYG----LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -HHHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3588999999999999998886544
No 170
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.58 E-value=7.2e-05 Score=63.81 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=57.0
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... ....+ .|+++|+||+|+... ....+.+..+. +
T Consensus 74 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~----~ 137 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRE-S-FEAISSWREKVV-----AEVGD-----IPTALVQNKIDLLDDSCIKNEEAEGLA----K 137 (168)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHCS-----CCEEEEEECGGGGGGCSSCHHHHHHHH----H
T ss_pred HhcCCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----HhCCC-----CCEEEEEECcccCcccccCHHHHHHHH----H
Confidence 345789999999998732 1 122333332211 11112 389999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 138 RLK----LRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp HHT----CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HcC----CeEEEEecCCCCCHHHHHHHHHHH
Confidence 333 368999999999999999887543
No 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.57 E-value=1.3e-05 Score=70.49 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=55.9
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. ++ ..+.+++..... .......|+++|+||+|+.... ....+.+... ..
T Consensus 86 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~--------~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~---~~ 151 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRD-RM-GVAKHELYALLD--------EDELRKSLLLIFANKQDLPDAA-SEAEIAEQLG---VS 151 (189)
T ss_dssp SSTTCCEEEEEEETTCCT-TH-HHHHHHHHHHHT--------CSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTT---GG
T ss_pred HhhcCCEEEEEEeCCCHH-HH-HHHHHHHHHHHh--------hhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhC---hh
Confidence 456789999999998753 22 222333222100 0000124899999999997542 2222222211 00
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........++.+||+++.|++++++.|.+..
T Consensus 152 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 0000112688999999999999998886544
No 172
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.57 E-value=2.8e-05 Score=69.05 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. + ...+.+++....... .. ...|+++|+||+|+.... ....+.... ...
T Consensus 93 ~~~~~d~iilv~D~~~~~-s-~~~~~~~l~~~~~~~---~~-----~~~piilv~NK~Dl~~~~-~~~~i~~~~---~~~ 158 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRE-R-VQESADELQKMLQED---EL-----RDAVLLVFANKQDMPNAM-PVSELTDKL---GLQ 158 (192)
T ss_dssp HHHTCCEEEEEEETTCGG-G-HHHHHHHHHHHHTCG---GG-----TTCEEEEEEECTTSTTCC-CHHHHHHHT---TGG
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHhccc---cc-----CCCeEEEEEECCCCCCCC-CHHHHHHHh---Ccc
Confidence 345789999999998753 2 223333332211000 00 124899999999996542 222222211 110
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........++.+||+++.|++++++.|.+..
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0000113588999999999999998886543
No 173
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.57 E-value=5.8e-05 Score=77.41 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=60.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.....+..+|++++|+|+.+.......+...++.. .+. |+++|+||+|+.+.. ..+.+.+.++.
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~~i-----p~IvviNK~Dl~~~~-~~~~~~~~l~~ 152 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH----------FNI-----PIIVVITKSDNAGTE-EIKRTEMIMKS 152 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CBCEEEECTTSSCHH-HHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH----------cCC-----CEEEEEECCCcccch-hHHHHHHHHHH
Confidence 34456778999999999987543322222222221 133 779999999997521 11222233333
Q ss_pred HHHHc-CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RARED-GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~-g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+++.. ++ ....++.+||++|.|+++|++.|.+.
T Consensus 153 ~l~~~~~~-~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 153 ILQSTHNL-KNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp HHHHSSSG-GGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHhhhccc-ccceEEEEECcCCCCHHHHHHHHHHh
Confidence 44433 32 12468999999999999998888653
No 174
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.56 E-value=0.00013 Score=65.62 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=53.5
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+... ...+.+++..... ....+ .|+++|+||+|+... .........+ .+.
T Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 146 (218)
T 4djt_A 82 YIGASGAILFFDVTSRIT--CQNLARWVKEFQA----VVGNE-----APIVVCANKIDIKNRQKISKKLVMEV----LKG 146 (218)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTHHHHHHHHHH----HHCSS-----SCEEEEEECTTCC----CCHHHHHHH----TTT
T ss_pred hhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHH----hcCCC-----CCEEEEEECCCCccccccCHHHHHHH----HHH
Confidence 456899999999987421 1223333322100 01112 389999999999754 2222222222 222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 147 ~~----~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 147 KN----YEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp CC----CEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred cC----CcEEEEecCCCCCHHHHHHHHHHH
Confidence 22 468999999999999999887543
No 175
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=0.00013 Score=64.30 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=57.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+.. + ...+..++... .... ....|+++|+||+|+... .......+.+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~---- 154 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEE-S-FNAVQDWATQI-----KTYS----WDNAQVILVGNKCDMEEERVVPTEKGQLL---- 154 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHH----
T ss_pred HHHHccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhc----CCCCCEEEEEECCCCccccccCHHHHHHH----
Confidence 34567899999999998632 1 12233333221 0111 012489999999999654 2233334333
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 ~~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 155 AEQLG----FDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 33334 368899999999999999887554
No 176
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.55 E-value=0.00013 Score=64.10 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=58.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++... .... ....|+++|+||+|+... ....+..+.|.
T Consensus 90 ~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~i-----~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 154 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQE-S-FAAVQDWATQI-----KTYS----WDNAQVILVGNKCDLEDERVVPAEDGRRLA---- 154 (189)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhc----CCCCCEEEEEECcccccccCCCHHHHHHHH----
Confidence 4566789999999998642 1 12233333221 0110 012389999999999753 22333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 155 ~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 155 DDLG----FEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp HHHT----CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334 3689999999999999998885543
No 177
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.55 E-value=0.00022 Score=63.24 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=59.0
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+..++... ..+.. ...|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 140 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEE-S-FNAVQDWSTQI-----KTYSW----DNAQVLLVGNKCDMEDERVVSSERGRQLA-- 140 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHSC----SSCEEEEEEECTTCTTSCCSCHHHHHHHH--
T ss_pred HHHhhcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccCcccccCHHHHHHHH--
Confidence 345567899999999998742 1 22333333221 11110 12389999999999754 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 141 --~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 141 --DHLG----FEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp --HHHT----CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred --HHCC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3334 368899999999999998887543
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.55 E-value=3.2e-05 Score=69.88 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.0
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCc
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~ 331 (413)
..+|++++ +|+||||||||+|+|+|+++
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35677666 99999999999999999874
No 179
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.55 E-value=0.00011 Score=63.41 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=57.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+... ...+..++... ...... ..+. +++++|+||+|+... ....+....|. +
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i-~~~~~~-~~~~----~~iilv~nK~Dl~~~~~~~~~~~~~~~----~ 143 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQS--FENLEDWYTVV-KKVSEE-SETQ----PLVALVGNKIDLEHMRTIKPEKHLRFC----Q 143 (178)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHHHHHHHH-HHHHHH-HTCC----CEEEEEEECGGGGGGCSSCHHHHHHHH----H
T ss_pred HHhhCCEEEEEEECCCHHH--HHHHHHHHHHH-HHHhcc-cCCC----CeEEEEEEccccccccccCHHHHHHHH----H
Confidence 4567899999999987431 12223333221 000000 0122 248999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 144 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 144 ENG----FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HHT----CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HcC----CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333 3688999999999999998886544
No 180
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.55 E-value=3.3e-05 Score=67.61 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=58.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ..+.+.+++..
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~nK~Dl~~~~-~~~~~~~~~~~-- 146 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQ-RM-QDCQRELQSLLVEE---RLAG-----ATLLIFANKQDLPGAL-SCNAIQEALEL-- 146 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHTTG--
T ss_pred HHHhcCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhCh---hcCC-----CcEEEEEeCccCCCCC-CHHHHHHHhCh--
Confidence 45577899999999998753 22 23333332211000 0012 3899999999997542 22233222110
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.... .....++.+||+++.|++++++.|.+...+
T Consensus 147 ~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 147 DSIR-SHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GGCC-SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhcc-CCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 0000 011368899999999999999988665543
No 181
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=5.6e-05 Score=66.71 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=57.8
Q ss_pred cCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+...- ....+...+.... ....+ .|+++|+||+|+............+. +.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 142 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK-----GSVED-----IPVMLVGNKCDETQREVDTREAQAVA----QE 142 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH-----SCGGG-----SCEEEEEECTTCSSCSSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-----cCCCC-----CCEEEEEECccCCccccCHHHHHHHH----HH
Confidence 3457999999999863210 0111222222110 00012 38999999999986544444444443 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.+ ..++.+||+++.|++++++.|.+....
T Consensus 143 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 143 WK----CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred hC----CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 33 368899999999999999998766544
No 182
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=9.8e-05 Score=65.24 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=59.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... ....+.+.+|. +
T Consensus 92 ~~~~~d~iilV~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piiiv~NK~Dl~~~~~v~~~~~~~~~----~ 156 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQD-S-FYTLKKWVKEL-----KEHGP----ENIVMAIAGNKCDLSDIREVPLKDAKEYA----E 156 (192)
T ss_dssp HHTTCSEEEEEEETTCTH-H-HHHHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred hhccCCEEEEEEeCCCHH-H-HHHHHHHHHHH-----HHhCC----CCCcEEEEEECcccccccccCHHHHHHHH----H
Confidence 456789999999998742 1 22333333321 01100 12489999999999753 33334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|++++++.|.+...
T Consensus 157 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 SIG----AIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTT----CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HcC----CEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 333 36889999999999999998866543
No 183
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.52 E-value=7.2e-05 Score=63.60 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=56.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+....+.+ .
T Consensus 73 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 138 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----Q 138 (168)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHCC---TTSCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEECccccccCccCHHHHHHHHH----H
Confidence 44589999999998742 1 12233332221 111110 12389999999999753 233344444432 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.+.+.
T Consensus 139 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 139 WN----VNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp HT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999887544
No 184
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.52 E-value=6.5e-05 Score=64.98 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC--CCChHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS--SLSPTRFEHWVRQ 268 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~--~~~~~~l~~~~~~ 268 (413)
...+..+|.+++|+|+.+.. + ...+..++.... ...........|+++|+||+|+... .........|..
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~- 147 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNAS-S-FENIKSWRDEFL-----VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK- 147 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-
T ss_pred HHHhhcCCEEEEEEECCChH-H-HHHHHHHHHHHH-----HHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-
Confidence 34567899999999998742 1 122333332210 0000000012389999999999643 123344444432
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ...++.+||+++.|++++++.|.+.
T Consensus 148 ---~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 ---SLG---DIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp ---HTT---SCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ---hcC---CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 121 1468899999999999999888543
No 185
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.52 E-value=0.00014 Score=65.64 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------CC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~~ 258 (413)
.+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... ..
T Consensus 102 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 169 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPN-SF-DNIFNRWYPEV-----NHFCKK-----VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169 (214)
T ss_dssp ---CEEEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----CCEEEEEECGGGGSCHHHHHHHHHTTCCCCC
T ss_pred HhccCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhhccchhhhhhcccccCccc
Confidence 456789999999998742 11 1222 222211 111112 3899999999997541 11
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+.... +.+..+ ...++.+||+++.|++++++.|.+..
T Consensus 170 ~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 170 YHRGQE----MARSVG---AVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHH----HHHHTT---CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHH----HHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 122222 233333 23689999999999999998886543
No 186
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.52 E-value=0.00015 Score=62.48 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++..... ....+ .|+++|+||+|+... .........+. +.
T Consensus 84 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~~----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 148 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTN-S-FHQTSKWIDDVRT----ERGSD-----VIIMLVGNKTDLSDKRQVSTEEGERKA----KE 148 (179)
T ss_dssp HHTCSEEEEEEETTCHH-H-HHTHHHHHHHHHH----HHTTS-----SEEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHH----hcCCC-----CcEEEEEECCcccccCcCCHHHHHHHH----HH
Confidence 45689999999998632 1 1223333322100 00012 389999999999753 22333333333 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 149 ~~----~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 149 LN----VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HT----CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred cC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33 3688999999999999998886544
No 187
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.0002 Score=64.14 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=55.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+.... .
T Consensus 92 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 159 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPD-SL-ENIPEKWVPEV-----KHFCPN-----VPIILVANKKDLRSDEHVRTELARMKQEPV 159 (207)
T ss_dssp GGCTTCCEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECGGGGGCHHHHHHHHHTTCCCC
T ss_pred hhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEchhhhccccchhhhhhcccCCC
Confidence 3567799999999998632 11 122 1222111 111112 3899999999997541 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+..
T Consensus 160 ~~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 160 RTDDGRA----MAVRIQ---AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHH----HHHhcC---CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111122 222222 23688999999999999998886543
No 188
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.52 E-value=9.3e-05 Score=63.95 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHcc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
...+.++|.+|||||||+|.|.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346888999999999999999863
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.51 E-value=2.9e-05 Score=78.13 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|+||||||||||+|++..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 56779999999999999999764
No 190
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.51 E-value=0.00016 Score=63.75 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=56.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... .... ...|+++|+||+|+... ....+....|. +
T Consensus 90 ~~~~~d~ii~v~d~~~~~-s-~~~~~~~l~~i~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 154 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRE-T-FNHLTSWLEDAR-----QHSS----SNMVIMLIGNKSDLESRRDVKREEGEAFA----R 154 (191)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHSC----TTCEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcC----CCCCEEEEEECcccCCccccCHHHHHHHH----H
Confidence 345789999999998732 1 222333332210 0000 12389999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 155 EHG----LIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
No 191
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.50 E-value=6.8e-05 Score=69.92 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC-CeeeeEeeccc-ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG-TTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg-tT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
..+.++|.+|||||||+|.|++..... .+..++ +|.+....... ......++||||+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFE---------------SKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSC---------------CCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCC
Confidence 368889999999999999999643111 111122 44433221111 123578999999864
No 192
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.50 E-value=0.00021 Score=62.30 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=59.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+... ...+..++... ..... ....|+++|+||+|+... ....+.+..+.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i-----~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 154 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQS--FLNVRNWISQL-----QMHAY---SENPDIVLCGNKSDLEDQRAVKEEEARELA-- 154 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHSS---SSSCCEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred HHHHHcCCCEEEEEEECCCHHH--HHHHHHHHHHH-----HHhcC---CCCCCEEEEEECcccccccccCHHHHHHHH--
Confidence 4456778999999999987421 12223333221 00110 011389999999999753 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 --~~~~----~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 155 --EKYG----IPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp --HHHT----CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHcC----CCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999887544
No 193
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.50 E-value=0.00013 Score=74.78 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=55.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC--C--chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDG--S--FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEH 264 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~--s--~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~ 264 (413)
....+..+|++|+|+|+.+... . ......+.+... ...+ .+++|+|+||+|+.... ...+.+..
T Consensus 128 ~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-------~~~~----~~~iIvviNK~Dl~~~~~~~~~~i~~ 196 (483)
T 3p26_A 128 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSLG----IHNLIIAMNKMDNVDWSQQRFEEIKS 196 (483)
T ss_dssp HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-------HHTT----CCCEEEEEECGGGGTTCHHHHHHHHH
T ss_pred HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-------HHcC----CCcEEEEEECcCcccchHHHHHHHHH
Confidence 3455677999999999987421 1 112222222111 0012 23799999999997531 11223444
Q ss_pred HHHHHHHHcCCCc-cceEEEeEEEeecCcchhc
Q 015085 265 WVRQRAREDGISK-ITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 265 ~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll 296 (413)
++..+++..|... ...++.+||++|.|+.++.
T Consensus 197 ~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 197 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred HHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 5555555555421 2468999999999998653
No 194
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.49 E-value=0.00014 Score=63.12 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=57.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++..... .......|+++|+||+|+.... ....+.+++.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~--------~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~---- 145 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKD-RM-STASKELHLMLQ--------EEELQDAALLVFANKQDQPGAL-SASEVSKELN---- 145 (183)
T ss_dssp GTTTTEEEEEEEEETTCTT-TH-HHHHHHHHHHTT--------SSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTT----
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHc--------ChhhCCCeEEEEEECCCCCCCC-CHHHHHHHhC----
Confidence 4566789999999998753 22 233333322100 0000124899999999997542 2233333221
Q ss_pred HcCC-CccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGI-SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~-~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... .....++.+||+++.|++++++.|.+..
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1111 0113688999999999999998885543
No 195
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.49 E-value=0.00011 Score=64.33 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=56.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++...... . + ....|+++|+||+|+.... ..+.+.+.+. .
T Consensus 79 ~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~~~----~--~--~~~~piilv~NK~Dl~~~~-~~~~~~~~~~---~ 144 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRK-RF-EETGQELTELLEE----E--K--LSCVPVLIFANKQDLLTAA-PASEIAEGLN---L 144 (181)
T ss_dssp HHHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHTTC----G--G--GTTCCEEEEEECTTSTTCC-CHHHHHHHTT---G
T ss_pred HHhCCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhC----h--h--hcCCCEEEEEECcCcccCC-CHHHHHHHhC---c
Confidence 4567799999999998743 22 2222222211000 0 0 0123899999999997542 2222222210 0
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..-......++.+||++|.|++++++.|.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 00000113588899999999999999886544
No 196
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.49 E-value=0.00021 Score=62.23 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=56.9
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.......+....+. +..+
T Consensus 74 ~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTK-S-FEDIHHYREQI-----KRVKDS---EDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYG 139 (189)
T ss_dssp HHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHTTC---SCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHT
T ss_pred hcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEECccCcccccCHHHHHHHH----HHcC
Confidence 3479999999998742 1 12233332211 011111 1248999999999986544444554443 3333
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|++++++.|.+..
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 ----IPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998885543
No 197
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.49 E-value=0.00029 Score=62.72 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... ....+....|.
T Consensus 76 ~~~~~~d~vilv~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 140 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQE-S-FNGVKMWLQEI-----DRYAT----STVLKLLVGNKCDLKDKRVVEYDVAKEFA---- 140 (206)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECCCCccccccCHHHHHHHH----
Confidence 4466789999999998742 1 22333333221 01110 12389999999999764 23333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 141 ~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 141 DANK----MPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp HHTT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3588999999999999998885543
No 198
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.49 E-value=3.8e-05 Score=68.27 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC---hHHHHHH-HHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS---PTRFEHW-VRQR 269 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~---~~~l~~~-~~~~ 269 (413)
+..+|++++|+|+.+........+.+++.... ....+ .|+++|+||+||++.... ...+... ...+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~ 162 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAY-----KVNPD-----MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL 162 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHH-----HHCTT-----CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHH-----hcCCC-----CcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence 44689999999999841112233444443220 01112 399999999999753110 0111111 1222
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+.........++.+||++ .|++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 163 ADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred HHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 2211000113678899999 999999887754
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.48 E-value=3.8e-05 Score=70.15 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.2
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
++...+|++++ +|+||||||||+++|+|++
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45556666555 9999999999999999988
No 200
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.48 E-value=0.00014 Score=62.05 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=57.0
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++... ... +. ...|+++|+||+|+... ....+....| .+
T Consensus 75 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~l-----~~~--~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~----~~ 139 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEE-T-FSTLKNWVREL-----RQH--GP--PSIVVAIAGNKCDLTDVREVMERDAKDY----AD 139 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHH--SC--TTSEEEEEEECTTCGGGCCSCHHHHHHH----HH
T ss_pred hCcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHh--CC--CCCcEEEEEECCccccccccCHHHHHHH----HH
Confidence 456789999999998742 1 12223333221 001 11 12389999999999753 2233333333 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 140 ~~~----~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 140 SIH----AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HTT----CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HcC----CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 333 3688999999999999998886543
No 201
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.48 E-value=0.00022 Score=62.34 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=56.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... ..+..+ .|+++|+||+|+... ..
T Consensus 74 ~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 141 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPE-TL-DSVLKKWKGEI-----QEFCPN-----TKMLLVGCKSDLRTDVSTLVELSNHRQTPV 141 (184)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred hhcCCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHHCCC-----CCEEEEEEcchhhcchhhHhhhhhcccCCC
Confidence 3567899999999998742 21 122 2222211 111112 389999999999742 22
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEE-eecCcchhccchhhhc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVDLA 303 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l~ 303 (413)
..+....|.+ ..+ ...++.+||+ .+.|++++++.+.+..
T Consensus 142 ~~~~~~~~~~----~~~---~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 142 SYDQGANMAK----QIG---AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CHHHHHHHHH----HHT---CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HcC---CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3333444432 233 1368899998 7899999998875543
No 202
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.47 E-value=0.00018 Score=64.43 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=59.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+.+++... ..... ...|+++|+||+|+... ....+....|.
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 158 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEE-S-FRCLPEWLREI-----EQYAS----NKVITVLVGNKIDLAERREVSQQRAEEFS-- 158 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCSSCHHHHHHHH--
T ss_pred HHHHHhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECCCCccccccCHHHHHHHH--
Confidence 446678899999999998742 1 12233333221 01111 12389999999999743 33334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 159 --~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 159 --EAQD----MYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp --HHHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHcC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233 3588999999999999998875443
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.47 E-value=8.3e-05 Score=74.81 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=30.7
Q ss_pred EEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
....|+...+++.+ ++ .+.++|+||||||||||+|+|...+..|
T Consensus 17 l~~~y~~~~vl~~v-sf-----~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 17 LPNQVYRKSVKRGF-EF-----TLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp CCCCTTTTTCC-CC-CE-----EEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred cceeECCEEEecCC-CE-----EEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 34455555555554 22 4677999999999999999998764443
No 204
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00012 Score=65.59 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=56.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCC---------ChHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL---------SPTR 261 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~---------~~~~ 261 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+..... ....
T Consensus 76 ~~~~~~d~~ilv~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~v~~~~ 143 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKA-SY-ENVLKKWMPEL-----RRFAPN-----VPIVLVGTKLDLRDDKGYLADHTNVITSTQ 143 (212)
T ss_dssp GGGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CCEEEEEECHHHHTCHHHHHTCSSCCCHHH
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEeCHHhhhCccccccccCCCCHHH
Confidence 4567799999999998742 11 1222 222211 111112 38999999999975310 2223
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...| .+..+ ...++.+||+++.|++++++.|.+..
T Consensus 144 ~~~~----~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 144 GEEL----RKQIG---AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHH----HHHcC---CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 3333 33333 23688999999999999998886544
No 205
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.47 E-value=6.4e-05 Score=63.74 Aligned_cols=58 Identities=34% Similarity=0.379 Sum_probs=32.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|..|+|||||+|.|.+.... .....+++|.+........ .....++||||...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4778999999999999999964311 1123345554433221111 23567999999865
No 206
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.46 E-value=7.8e-05 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=25.7
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHc
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g 328 (413)
.+++.+ ++..+..++.++|.+|||||||++.+.+
T Consensus 14 ~~l~~~-~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFL-GLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHH-TCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHh-hccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344444 3444556788899999999999999985
No 207
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.46 E-value=9.4e-05 Score=65.44 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=55.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++... ..... ...|+++|+||+|+... ....+..+.|. +
T Consensus 95 ~~~~~d~iilV~D~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~ 159 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKE-T-FDDLPKWMKMI-----DKYAS----EDAELLLVGNKLDCETDREITRQQGEKFA----Q 159 (192)
T ss_dssp HHHHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred HhcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCcEEEEEECcccccccccCHHHHHHHH----H
Confidence 345689999999998742 1 12222332211 01110 12389999999999753 22333343332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
... ...++.+||+++.|++++++.|.+.
T Consensus 160 ~~~---~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 160 QIT---GMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp TST---TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hcC---CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 221 1468899999999999999888544
No 208
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.45 E-value=6.7e-05 Score=68.44 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=34.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
.++.++|.+|||||||+|.|++.. ......+++|.+........ .....++||||..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN----------------VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLL 87 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC----------------EEEECC-----CEEEEEEEETTEEEEEEECTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCCcceeeeeeeeecCCCeEEEEECCCCc
Confidence 468889999999999999998522 11234566666543321111 1246789999984
No 209
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.45 E-value=8.9e-05 Score=74.16 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=50.2
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...+..+|.+++|+|+.+.......++..++.. .+. | +++|+||+|+.......+.+...++.+
T Consensus 93 ~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~----------~~i-----p~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 93 ITGAAQMDGAILVVSAADGPMPQTREHILLARQ----------VGV-----PYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----CCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----------cCC-----CEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 345667899999999988653322233332221 132 5 899999999974210011222233344
Q ss_pred HHHcCCC-ccceEEEeEEEeecC
Q 015085 270 AREDGIS-KITKLHFVSAVKNWG 291 (413)
Q Consensus 270 ~~~~g~~-~~~~V~~vSa~~~~G 291 (413)
++..+.. ....++.+||+++.|
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHhcccccCCCEEEccHHHhhh
Confidence 4544431 124689999999987
No 210
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.45 E-value=0.0001 Score=80.93 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.8
Q ss_pred cccccc--CCCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 374 DTPGLL--HPNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 374 DtpGl~--~~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
+..|+. ..++.+..|||||+||+.+|++|. ++.|.||+|.
T Consensus 848 ~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 894 (993)
T 2ygr_A 848 VDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT 894 (993)
T ss_dssp HHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT
T ss_pred HHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 334553 246788999999999999999997 3789999884
No 211
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.45 E-value=6.9e-05 Score=82.11 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=32.4
Q ss_pred ccccccc--CCCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 373 FDTPGLL--HPNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
++..|+. ..++.+..|||||+||+.+|++|. ++.|.||+|.
T Consensus 829 L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 829 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp HHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred HHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 3344554 246788999999999999999997 3789999884
No 212
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.44 E-value=0.00012 Score=65.38 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=56.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+++|+|+.+.. ++ ..+..++....... ...+ .|+++|+||+|+.. ....+.+.+++......
T Consensus 89 ~~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHE-RL-LESKEELDSLMTDE---TIAN-----VPILILGNKIDRPE-AISEERLREMFGLYGQT 157 (198)
T ss_dssp GGGGCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----SCEEEEEECTTSTT-CCCHHHHHHHHTCTTTC
T ss_pred HHhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHhCc---ccCC-----CcEEEEEECCCccc-cCCHHHHHHHhCccccc
Confidence 456789999999998753 22 22333332211000 0012 38999999999965 33445555543211000
Q ss_pred --cC---C----CccceEEEeEEEeecCcchhccchhh
Q 015085 273 --DG---I----SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 --~g---~----~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ + .....++.+||++|.|++++++.|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 00 0 01236889999999999999988754
No 213
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.44 E-value=0.00031 Score=61.16 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... .........|.
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 142 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-T-YNALTNWLTDA-----RMLAS----QNIVIILCGNKKDLDADREVTFLEASRFA-- 142 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH--
T ss_pred HHHHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCcEEEEEECcccccccccCHHHHHHHH--
Confidence 445678899999999998732 1 12233333211 00100 12389999999999743 23333444433
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.+.+.
T Consensus 143 --~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 143 --QENE----LMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp --HHTT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHcC----CEEEEecCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999998887543
No 214
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.44 E-value=6.8e-05 Score=76.42 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=57.0
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
++....+..+|+|++|+|+.+........+.+.+. . .|+++|+||+|+.+.... ..+..|
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~------------~-----~piivV~NK~Dl~~~~~~-~~~~~~-- 354 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK------------H-----RPLILVMNKIDLVEKQLI-TSLEYP-- 354 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT------------T-----SCEEEEEECTTSSCGGGS-TTCCCC--
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc------------C-----CcEEEEEECCCCCcchhh-HHHHHh--
Confidence 44556788899999999998854433333333332 1 289999999999754211 001010
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. ....++.+||+++.|+++|++.|.+...
T Consensus 355 ------~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 355 ------E--NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp ------T--TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred ------c--cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 0 1246889999999999999998866543
No 215
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.44 E-value=4.7e-05 Score=76.71 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=58.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++++|+|+ . .......+.+++... + .|+++|+||+|+...... +..++
T Consensus 106 ~~~~~l~~aD~vllVvD~-~-~~~~~~~~l~~l~~~----------~-----~piIvV~NK~Dl~~~~~~-~~~~~---- 163 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS-A-PTPYEDDVVNLFKEM----------E-----IPFVVVVNKIDVLGEKAE-ELKGL---- 163 (423)
T ss_dssp HHHHHHTSCSEEEEECSS-S-CCHHHHHHHHHHHHT----------T-----CCEEEECCCCTTTTCCCT-HHHHH----
T ss_pred HHHHHHhcCCEEEEEEeC-C-ChHHHHHHHHHHHhc----------C-----CCEEEEEeCcCCCCccHH-HHHHH----
Confidence 445567789999999998 2 222333444444321 2 389999999999865322 12222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 164 l~~~~g----~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 164 YESRYE----AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SSCCTT----CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHcC----CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 222222 3678899999999999999987766
No 216
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.44 E-value=0.00017 Score=62.02 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=55.9
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|+.+.. + ...+.+++... ..... ....|+++|+||+|+... ....+....|. .
T Consensus 74 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~l-----~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~ 139 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRG-S-FESASELRIQL-----RRTHQ---ADHVPIILVGNKADLARCREVSVEEGRACA----V 139 (175)
T ss_dssp TTTSCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHCC-------CCEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred hcccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhc---cCCCCEEEEEEChhhccccccCHHHHHHHH----H
Confidence 456789999999998742 2 12222332211 00000 012389999999999754 23333444443 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 140 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 140 VFD----CKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp HHT----SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HcC----CeEEEEecCCCCCHHHHHHHHHHH
Confidence 233 368899999999999999888543
No 217
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=0.00017 Score=64.03 Aligned_cols=92 Identities=14% Similarity=0.016 Sum_probs=54.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-------CCCChHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------SSLSPTRFEHW 265 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-------~~~~~~~l~~~ 265 (413)
.+..+|++++|+|+.+... ...+..++... ..... ...|+++|+||+|+.. .....+....|
T Consensus 97 ~~~~~d~iilv~d~~~~~s--~~~~~~~~~~i-----~~~~~----~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~ 165 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKS--FLNIREWVDMI-----EDAAH----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL 165 (199)
T ss_dssp HHHHCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH
T ss_pred HHhhCCEEEEEEECCChHH--HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccccccccccccccCHHHHHHH
Confidence 3456899999999986421 12223333211 00000 1138999999999962 22223333333
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 166 ----~~~~~----~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 ----AMTYG----ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ----HHHHT----CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHcC----CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333 3688999999999999998885543
No 218
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.44 E-value=0.00029 Score=59.98 Aligned_cols=92 Identities=20% Similarity=0.136 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|+.+.. + ...+..++..... .. . ....|+++|+||+|+.+.. ...+....+ .+
T Consensus 69 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~-~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~ 134 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKG-S-FEKASELRVQLRR-----AR-Q--TDDVPIILVGNKSDLVRSREVSVDEGRAC----AV 134 (166)
T ss_dssp ----CCEEEEEEETTCHH-H-HHHHHHHHHHHHH-----CC------CCCEEEEEECTTCCSSCCSCHHHHHHH----HH
T ss_pred hhhhCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----hc-C--CCCCCEEEEEeccccccccccCHHHHHHH----HH
Confidence 456789999999998742 1 2233333322100 00 0 0124899999999997642 233333333 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 135 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 135 VFD----CKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HTT----CEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HhC----CcEEEeccCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999888554
No 219
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.44 E-value=0.00014 Score=63.08 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC---CCCChHHHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~---~~~~~~~l~~~~~~~~~~ 272 (413)
.+|++++|+|+.+.. ++ ..+..++... ....... ....|+++|+||+|+.. .....+....|.+ .
T Consensus 72 ~~d~~ilv~D~~~~~-s~-~~~~~~~~~i-----~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~ 139 (178)
T 2iwr_A 72 WADAVIFVFSLEDEN-SF-QAVSRLHGQL-----SSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXA----D 139 (178)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----H
T ss_pred hCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHH----h
Confidence 479999999998743 21 2233322110 0011100 01248999999999942 2333445555433 2
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ...++.+||+++.|++++++.+.+.
T Consensus 140 ~~---~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 140 MK---RCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HS---SEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hc---CCeEEEEeccccCCHHHHHHHHHHH
Confidence 21 1468899999999999998887543
No 220
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.43 E-value=9.9e-05 Score=63.76 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
No 221
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.43 E-value=5.6e-05 Score=74.72 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
+.++|.+|||||||||+|++... .+...+++|++.......++ ....++||+|+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i 237 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBC
T ss_pred EEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCch
Confidence 66799999999999999996542 12234455554322111122 345788999974
No 222
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.43 E-value=0.00027 Score=69.43 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.+|||||||||+|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6888999999999999999994
No 223
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.43 E-value=9.4e-05 Score=74.11 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=57.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|.+++|+|+.+.. .....+...++... +. +++++|+||+|+...... ....+.++.
T Consensus 100 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~----------~~----~~iivviNK~Dl~~~~~~-~~~~~~i~~ 164 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----------GQ----KNIIIAQNKIELVDKEKA-LENYRQIKE 164 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------TC----CCEEEEEECGGGSCHHHH-HHHHHHHHH
T ss_pred HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc----------CC----CcEEEEEECccCCCHHHH-HHHHHHHHH
Confidence 334556789999999998753 21112222222211 21 379999999999753100 011112222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+++.... ....++.+||+++.|+++|++.|.+...
T Consensus 165 ~l~~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGTVA-ENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcCc-CCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3322111 1246899999999999999999876443
No 224
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.42 E-value=8e-05 Score=63.45 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=54.7
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~~ 273 (413)
..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.... ...+....+. +..
T Consensus 73 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 138 (167)
T 1c1y_A 73 KNGQGFALVYSITAQS-T-FNDLQDLREQI-----LRVKDT---EDVPMILVGNKCDLEDERVVGKEQGQNLA----RQW 138 (167)
T ss_dssp HHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHCC---SCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHT
T ss_pred ccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhCc---CCCcEEEEEECccccccccCCHHHHHHHH----HHc
Confidence 3479999999998742 1 12222222211 001100 123899999999997532 2334444443 333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ...++.+||+++.|++++++.|.+.
T Consensus 139 ~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 139 C---NCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp T---SCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred c---CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1 1468999999999999999887543
No 225
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.42 E-value=3.6e-05 Score=78.82 Aligned_cols=58 Identities=33% Similarity=0.355 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|++.. ...++..+|||++.+.....+. ....++||||+..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 57789999999999999998532 1234567889987754322222 2468999999854
No 226
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.42 E-value=5.4e-05 Score=75.70 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||||+|++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999953
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.42 E-value=0.00012 Score=76.75 Aligned_cols=62 Identities=29% Similarity=0.234 Sum_probs=36.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEee--c--ccccccccccccccccCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRV--E--GVLPAQAKLFDTPGLLHPN 382 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~--~--~~l~~~~~liDtpGl~~~~ 382 (413)
.+.++|.+|+|||||||.|+|... + + .+.. ...++|.+...+ + ........++||||+....
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~---~-~-----~~~~----tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKK---G-F-----SLGS----TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS---C-S-----CCCC----SSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred EEEEECCCCCCHHHHHHhHcCCCC---c-c-----ccCC----CCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 456699999999999999997531 1 0 0000 112333333221 1 1123457899999998543
No 228
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.41 E-value=0.00013 Score=63.33 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=56.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ......+..+. +.
T Consensus 87 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 152 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRA----EQ 152 (187)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHCC---TTCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECccccccCccCHHHHHHHH----HH
Confidence 44589999999998742 1 12233333221 111110 12389999999999753 23334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 153 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 153 WN----VNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999888554
No 229
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.41 E-value=0.00011 Score=71.58 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=56.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|+||+|+|+.+.. ++ ..+..++....... . ....|+++|+||+|+.... ....+... ...
T Consensus 228 ~~~~~ad~vilV~D~~~~~-s~-~~~~~~~~~~~~~~------~--~~~~piilV~NK~Dl~~~~-~~~~i~~~---~~~ 293 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAED------E--LRDAVLLVFANKQDLPNAM-NAAEITDK---LGL 293 (329)
T ss_dssp HHHTTEEEEEEEEETTCSS-SH-HHHHHHHHHHHTCG------G--GTTCEEEEEEECTTSTTCC-CHHHHHHH---HTC
T ss_pred HHhccCCEEEEEEECCchH-HH-HHHHHHHHHHHhhh------c--cCCCeEEEEEECccCCccc-CHHHHHHH---hch
Confidence 3456789999999998753 22 22222222110000 0 0123899999999997542 22222221 111
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+.+
T Consensus 294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00001123588999999999999999886554
No 230
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.41 E-value=0.00024 Score=71.75 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=53.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH---HHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR---FEHWVRQ 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~---l~~~~~~ 268 (413)
..+..+|++++|+|+.+.......+...++... +. +++++|+||+|+.... .+. +.+.++.
T Consensus 123 ~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~----------~~----~~iIvviNK~Dl~~~~--~~~~~~i~~~~~~ 186 (434)
T 1zun_B 123 TGASTCDLAIILVDARYGVQTQTRRHSYIASLL----------GI----KHIVVAINKMDLNGFD--ERVFESIKADYLK 186 (434)
T ss_dssp HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT----------TC----CEEEEEEECTTTTTSC--HHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEEcCcCCccc--HHHHHHHHHHHHH
Confidence 345789999999999986432222222222211 22 3699999999997531 222 2233334
Q ss_pred HHHHcCC-CccceEEEeEEEeecCcchhc
Q 015085 269 RAREDGI-SKITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 269 ~~~~~g~-~~~~~V~~vSa~~~~Gi~~Ll 296 (413)
+++..+. .....++.+||++|.|+.++.
T Consensus 187 ~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 187 FAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHhCCCccCceEEEEeccCCCCccccc
Confidence 4444441 012468899999999998743
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.41 E-value=0.00021 Score=63.20 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=35.8
Q ss_pred ccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 304 GKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 304 ~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
....++.++|.+|||||||++.+.+.... ...+..+.+...+.+. .-...++||||...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA---------------TLQPTWHPTSEELAIG---NIKFTTFDLGGHIQ 79 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC---------------CCCCCCSCEEEEEEET---TEEEEEEECCCSGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC---------------ccccCCCCCeEEEEEC---CEEEEEEECCCCHH
Confidence 34457888999999999999999853210 1112233344433332 23467899999753
No 232
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.41 E-value=0.00035 Score=63.75 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=66.5
Q ss_pred ccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEccc
Q 015085 172 TVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKID 251 (413)
Q Consensus 172 ~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~D 251 (413)
.++|+...+.|.. + .......++.+++|+|..+.. + ...+.+++..... .. + ...|++||+||+|
T Consensus 65 ~iwDtaGqe~~~~-l---~~~~~~~a~~~ilv~di~~~~-S-f~~i~~~~~~i~~-----~~-~---~~~piilVgNK~D 129 (216)
T 4dkx_A 65 QLWDTAGLERFRS-L---IPSYIRDSAAAVVVYDITNVN-S-FQQTTKWIDDVRT-----ER-G---SDVIIMLVGNKTD 129 (216)
T ss_dssp EEECCSCTTTCGG-G---HHHHHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HH-T---TSSEEEEEEECTT
T ss_pred EEEECCCchhhhh-H---HHHHhccccEEEEEeecchhH-H-HHHHHHHHHHHHH-----hc-C---CCCeEEEEeeccc
Confidence 3555444444442 2 223456789999999998742 2 2334444432211 00 1 1248999999999
Q ss_pred CCCC-CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 252 LLPS-SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 252 Ll~~-~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
|... ....++.++|.+ ..+ ...+.+||++|.|++++++.|...+
T Consensus 130 l~~~r~V~~~e~~~~a~----~~~----~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 130 LADKRQVSIEEGERKAK----ELN----VMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp CGGGCCSCHHHHHHHHH----HHT----CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hHhcCcccHHHHhhHHH----HhC----CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 9753 344455555543 344 2477899999999999998885543
No 233
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00034 Score=63.37 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=57.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++.... ... . ...|+++|+||+|+... ....+....|.
T Consensus 81 ~~~~~~d~vilV~D~~~~~-s-~~~~~~~l~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 145 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSS-S-YENCNHWLSELR-----ENA-D---DNVAVGLIGNKSDLAHLRAVPTEESKTFA---- 145 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHH-H-HHHHHHHHHHHH-----HHC-C-----CEEEEEECCGGGGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEeCCCHH-H-HHHHHHHHHHHH-----HhC-C---CCCeEEEEEECcccccccccCHHHHHHHH----
Confidence 4466789999999998742 1 223333333210 000 0 11389999999999753 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+..+ ..++.+||+++.|++++++.|.+.+..
T Consensus 146 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQ----LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTT----CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcC----CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333 368889999999999999888665443
No 234
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.40 E-value=9.5e-05 Score=65.44 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=56.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.. ....+++.+++.....
T Consensus 86 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~ 154 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPE-RF-DEARVELDALFNIA---ELKD-----VPFVILGNKIDAPN-AVSEAELRSALGLLNT 154 (190)
T ss_dssp GGCTTCCEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----CCEEEEEECTTSTT-CCCHHHHHHHTTCSSC
T ss_pred HHHhcCCEEEEEEECCChH-HH-HHHHHHHHHHHcch---hhcC-----CCEEEEEECCCCcC-CCCHHHHHHHhCCccc
Confidence 4456889999999998753 22 22333332210000 0012 38999999999975 2233444333211000
Q ss_pred -H---cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 -E---DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 -~---~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
. ........++.+||+++.|++++++.|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 155 TGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 00001235888999999999999988743
No 235
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.39 E-value=0.00017 Score=61.60 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=35.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||+|.|.+..... ...+..|++.....+.... .....++||||..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 57889999999999999998643110 1123344444332222111 1246789999975
No 236
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.38 E-value=0.00014 Score=62.69 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
No 237
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.0003 Score=62.62 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=56.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... .... ...|+++|+||+|+... .........|. +
T Consensus 94 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 158 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRE-T-YNSLAAWLTDAR-----TLAS----PNIVVILCGNKKDLDPEREVTFLEASRFA----Q 158 (200)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHTC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----HhcC----CCCcEEEEEECCCcccccccCHHHHHHHH----H
Confidence 456789999999998742 1 222333332210 0000 12389999999999743 22333444433 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 159 ~~~----~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 159 ENE----LMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999998887543
No 238
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.38 E-value=0.00029 Score=61.94 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=56.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... ... ....|+++|+||+|+... .........| .+
T Consensus 94 ~~~~~d~vi~v~D~~~~~-s-~~~~~~~l~~i~--------~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 158 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQ-T-YAVVERWLKELY--------DHA-EATIVVMLVGNKSDLSQAREVPTEEARMF----AE 158 (193)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH--------TTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH--------Hhc-CCCCeEEEEEECCCcccccccCHHHHHHH----HH
Confidence 456789999999998742 1 122333332210 000 012489999999999753 2233334433 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 159 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 159 NNG----LLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
No 239
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.38 E-value=0.00012 Score=66.11 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+..+|++++|+|+.+.. + ...+..++... .....+ .|+++|+||+|+....... ....+. +..
T Consensus 85 ~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~-~~~~~~----~~~ 147 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRV-T-YKNVPNWHRDL-----VRVCEN-----IPIVLCGNKVDIKDRKVKA-KSIVFH----RKK 147 (221)
T ss_dssp HTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSTT-----CCEEEEEECTTSSSCSSCG-GGCCHH----HHH
T ss_pred HhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhCCC-----CCEEEEEECCccccccccH-HHHHHH----HHc
Confidence 45689999999998742 1 22233333221 011112 3899999999997653322 222232 222
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+ ..++.+||+++.|++++++.|.+...
T Consensus 148 ~----~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 N----LQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp T----CEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred C----CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 36889999999999999988855443
No 240
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.37 E-value=0.00028 Score=63.34 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=55.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... ..+..+ .|+++|+||+|+... ..
T Consensus 95 ~~~~~~d~~ilv~D~~~~~-s~-~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPE-TL-DSVLKKWKGEI-----QEFCPN-----TKMLLVGCKSDLRTDVSTLVELSNHRQTPV 162 (205)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHHCCC-----CCEEEEEechhhccchhhhhhhcccccCCC
Confidence 3567899999999998732 21 122 2222211 111112 389999999999742 12
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEE-eecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l 302 (413)
..+....|. +..+ ...++.+||+ .+.|++++++.|.+.
T Consensus 163 ~~~~~~~~~----~~~~---~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 163 SYDQGANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CHHHHHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH----HHcC---CCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 223333433 2333 1368899998 689999999887554
No 241
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.37 E-value=4.3e-05 Score=78.30 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=40.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
++.++|.+|||||||||.|++... ..++..||||++.+.....+. ....++||||+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 677899999999999999996421 224567888887643322222 246899999997
No 242
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.37 E-value=0.00024 Score=73.55 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=36.3
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCc------------------EEEE----cCCCCcHHHHHHHHHccCc
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGN------------------VWAI----GAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~------------------~~~v----G~ng~GKSTLin~L~g~~~ 331 (413)
+|++.||.++.|+++|++.|.++.+.... ++=+ .++..|+-++++...|.+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~ 325 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQ 325 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEE
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEc
Confidence 68888999999999999988776653221 1113 2347888888888877654
No 243
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.37 E-value=0.00016 Score=64.07 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=56.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+.+..|.. .
T Consensus 83 ~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 148 (206)
T 2bov_A 83 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----Q 148 (206)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHTTC---SCCCEEEEEECTTCGGGCCSCHHHHHHHHH----H
T ss_pred HhhCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCCEEEEEeccCccccccccHHHHHHHHH----H
Confidence 44589999999998742 1 12233333221 111110 12489999999999753 333444555443 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 149 ~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 149 WN----VNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred hC----CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999888544
No 244
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.37 E-value=0.0001 Score=72.28 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
...+.++.++++|+|+|++++... ....+..++... ..+.... ...|+++|+||+|+... .+.++.+
T Consensus 229 ~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL-----~~~~~~l--~~~p~ilV~NK~Dl~~~---~e~~~~l-- 296 (342)
T 1lnz_A 229 QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL-----SEYNLRL--TERPQIIVANKMDMPEA---AENLEAF-- 296 (342)
T ss_dssp HHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHH-----HHSCSST--TTSCBCBEEECTTSTTH---HHHHHHH--
T ss_pred HHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHH-----HHhhhhh--cCCCEEEEEECccCCCC---HHHHHHH--
Confidence 334445668999999999875321 122332222211 1111000 12389999999999742 1222222
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+.... ...++.+||+++.|+++|++.|.+.+.
T Consensus 297 --~~~l~~--~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 297 --KEKLTD--DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp --HHHCCS--CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred --HHHhhc--CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 222221 135788999999999999998866543
No 245
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.37 E-value=0.00024 Score=70.87 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=57.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|.+++|+|+.+.......+...++.. .+. | +++|+||+|+.......+.+.+-+++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~~v-----p~iivviNK~Dl~~~~~~~~~~~~~~~~ 147 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQ----------IGV-----EHVVVYVNKADAVQDSEMVELVELEIRE 147 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCC-----CeEEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4456778999999999998543222222222221 132 5 78999999997421001122233344
Q ss_pred HHHHcCCC-ccceEEEeEEEeecC----------cchhccchhhhc
Q 015085 269 RAREDGIS-KITKLHFVSAVKNWG----------LKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~-~~~~V~~vSa~~~~G----------i~~Ll~~I~~l~ 303 (413)
+++..+.. ....++.+||+++.+ +.+|++.|.++.
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 45555431 123689999999875 567777775533
No 246
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.37 E-value=0.00013 Score=63.01 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
No 247
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.36 E-value=0.00012 Score=64.34 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=54.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+... ...+..++... ...... ...|+++|+||+|+... ....+....| .
T Consensus 89 ~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~----~ 154 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMAS--FHSLPAWIEEC-----KQHLLA---NDIPRILVGNKCDLRSAIQVPTDLAQKF----A 154 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHH-----HHHCCC---SCCCEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHhcCCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECccccccceeCHHHHHHH----H
Confidence 34567899999999986321 11222332211 011000 12389999999999754 2233333333 3
Q ss_pred HHcCCCccceEEEeEEEee---cCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKN---WGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~---~Gi~~Ll~~I~~ 301 (413)
+..+ ..++.+||+++ .|++++++.|.+
T Consensus 155 ~~~~----~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 155 DTHS----MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HHTT----CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred HHcC----CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 3343 36889999999 888888877743
No 248
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=9.3e-05 Score=63.26 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+... ...+..++... ....... ...|+++|+||+|+.+. .........+ .+.
T Consensus 72 ~~~~~~~i~v~d~~~~~~--~~~~~~~~~~i-----~~~~~~~--~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~ 138 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQS--LEELKPIYEQI-----CEIKGDV--ESIPIMLVGNKCDESPSREVQSSEAEAL----ART 138 (172)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTTHHHHHHH-----HHHHC-----CCCEEEEEECGGGGGGCCSCHHHHHHH----HHH
T ss_pred cccCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHHhCCC--CCCCEEEEEEccccccccccCHHHHHHH----HHH
Confidence 345799999999986321 11122222111 0010000 11389999999999754 2222333333 223
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+ ..++.+||+++.|++++++.|.+...
T Consensus 139 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 139 WK----CAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred hC----CeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 33 36889999999999999999866553
No 249
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.36 E-value=0.00012 Score=62.40 Aligned_cols=58 Identities=26% Similarity=0.171 Sum_probs=29.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|.+.+... ...+..+|++...........-...++||||...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED---------------GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-------------------------CEEEEEEEETTEEEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHcCccc---------------cCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 578899999999999999985321 1223445566542211101111356889999753
No 250
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.36 E-value=0.00011 Score=62.66 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
No 251
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.36 E-value=0.00022 Score=63.44 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=58.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++..... .. . ....|+++|+||+|+... .........|.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~~-----~~-~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 156 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLH-S-FQVIESLYQKLHE-----GH-G--KTRVPVVLVGNKADLSPEREVQAVEGKKLA---- 156 (201)
T ss_dssp GGTTTCCEEEEEEETTCHH-H-HHHHHHHHHHHHC-------------CCCEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHHhcCCEEEEEEeCCCHH-H-HHHHHHHHHHHHH-----hc-C--CCCCCEEEEEECccCccccccCHHHHHHHH----
Confidence 3456789999999998642 1 2233333322100 00 0 012389999999999754 23333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+ ..++.+||+++.|++++++.|.+...
T Consensus 157 ~~~~----~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 157 ESWG----ATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHT----CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhC----CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333 36889999999999999988865543
No 252
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.35 E-value=0.00011 Score=79.01 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCcEEEEEEeCCCCCCCchH-HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~-~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+.+|+|++|+|+.......+. .+.+.+... + .|+++|+||+|++++..... ..... +..
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~----------g-----~pvIlVlNKiDlv~~~~~~~---~il~~--~~~ 245 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQ----------G-----QRTIGVITKLDLMDEGTDAR---DVLEN--KLL 245 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTT----------C-----SSEEEEEECTTSSCTTCCSH---HHHTT--CSS
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhc----------C-----CCEEEEEeCcccCCcchhhH---HHHHH--Hhh
Confidence 678999999999876554444 455555432 3 38999999999986643221 11110 000
Q ss_pred CC-CccceEEEeEEEeecCcchhccchhh
Q 015085 274 GI-SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~-~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. .++..|+.+||+++.|+++|++.|..
T Consensus 246 ~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 246 PLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hhhccCCceEEecccccccchhHHHHHHH
Confidence 00 13356888999999999999998865
No 253
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.35 E-value=0.00032 Score=62.39 Aligned_cols=92 Identities=23% Similarity=0.128 Sum_probs=56.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++.... .... ....|+++|+||+|+... ....+....|. +.
T Consensus 94 ~~~~d~~ilv~d~~~~~-s-~~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~a----~~ 159 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRR-S-FSKVPETLLRLR-----AGRP---HHDLPVILVGNKSDLARSREVSLEEGRHLA----GT 159 (195)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHST---TSCCCEEEEEECTTCTTTCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcC---CCCCCEEEEeechhccccCCcCHHHHHHHH----HH
Confidence 34579999999998742 1 122333332210 0000 012389999999999754 23334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.+.+..
T Consensus 160 ~~----~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 160 LS----CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TT----CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hC----CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 33 3688999999999999998886543
No 254
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=63.10 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=57.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|+.+.. + ...+..++..... .......+ .|+++|+||+|+... ....+....|.+
T Consensus 88 ~~~~~~~~ilv~d~~~~~-s-~~~~~~~~~~i~~-~~~~~~~~-----~piilv~nK~Dl~~~~~v~~~~~~~~~~---- 155 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQ-S-FDSSSSYLELLAL-HAKETQRS-----IPALLLGNKLDMAQYRQVTKAEGVALAG---- 155 (187)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-HHHHHCCC-----CCEEEEEECGGGGGGCSSCHHHHHHHHH----
T ss_pred HHhhCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-HhhccCCC-----CCEEEEEECcchhhcCccCHHHHHHHHH----
Confidence 345689999999998632 2 2233333332210 00000012 389999999999643 333444555443
Q ss_pred HcCCCccceEEEeEE-EeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSA-VKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa-~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+|| +++.|++++++.|.+.
T Consensus 156 ~~~----~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 156 RFG----CLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp HHT----CEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred HcC----CcEEEEeecCccccHHHHHHHHHHH
Confidence 333 36889999 8999999999887554
No 255
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=3e-05 Score=69.22 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=52.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchH---HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH------
Q 015085 193 ASGARSVVLMVVDAADFDGSFPR---KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE------ 263 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~---~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~------ 263 (413)
.+..+|++++|+|+.+... +.. .+.+.+... ..+ .|+++|+||+|+.......+.+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~--------~~~-----~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHH--------CPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
Confidence 4567899999999987532 211 222222211 001 38999999999975421111000
Q ss_pred ---HHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 264 ---HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 264 ---~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+....+.+..+ ...++.+||+++.|++++++.|.+
T Consensus 164 v~~~~~~~~~~~~~---~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 164 ITYPQGLAMAKEIG---AVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 00111122222 125788999999999999988743
No 256
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.32 E-value=0.00015 Score=61.78 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5778999999999999999864
No 257
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.32 E-value=0.00018 Score=63.25 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999953
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=0.00013 Score=64.19 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC---CCCChHHHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~---~~~~~~~l~~~~~~~~~~ 272 (413)
.+|++++|+|+.+.. + ...+..++.... .+. + ....|+++|+||+|+.. .....+....|. +.
T Consensus 85 ~~~~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~-~--~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~ 150 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEI-S-FQTVYNYFLRLC-----SFR-N--ASEVPMVLVGTQDAISAANPRVIDDSRARKLS----TD 150 (184)
T ss_dssp HCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----TTS-C--GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----HH
T ss_pred CCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----Hhc-C--CCCCCEEEEEECcccccccccccCHHHHHHHH----HH
Confidence 479999999998742 1 222333333210 000 0 01138999999999952 223334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ...++.+||+++.|++++++.+.+.
T Consensus 151 ~~---~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 151 LK---RCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp TT---TCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cC---CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 32 1367899999999999999887543
No 259
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.32 E-value=0.00016 Score=76.25 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=22.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC-CCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA-GRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~-~~G~~~ 338 (413)
.+.++|+||||||||+++|+|+..| ++|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 3777999999999999999999878 678654
No 260
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.32 E-value=4.5e-05 Score=77.76 Aligned_cols=57 Identities=35% Similarity=0.480 Sum_probs=35.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
.+.++|.+|||||||+|.|++.. ...++..+|||++.+.....+. ....++||||+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~---------------~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD---------------RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---------------BSCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC---------------cccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 57789999999999999999642 1223456888876643221122 246799999974
No 261
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.31 E-value=0.00023 Score=60.86 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||+|.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999954
No 262
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.31 E-value=0.00019 Score=62.50 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
No 263
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.30 E-value=0.0001 Score=75.48 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=58.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|+||+|+|+.+.. + ...+..++....... ...+ .|+++|+||+|+.... ....+...+.
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~-s-~~~~~~~~~~~~~~~---~~~~-----~p~ilv~NK~Dl~~~~-~~~~~~~~~~-- 449 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRD-R-IDEARQELHRIINDR---EMRD-----AIILIFANKQDLPDAM-KPHEIQEKLG-- 449 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGG-G-HHHHHHHHHHHHTSG---GGTT-----CEEEEEEECCSSSSCC-CHHHHHHHTT--
T ss_pred HHHHhccCCEEEEEEECcchh-H-HHHHHHHHHHHhhhh---hcCC-----CcEEEEEECCCCCcCC-CHHHHHHHhc--
Confidence 345678899999999998742 2 222233322211000 0012 3999999999997542 2222222110
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..........++.+||++|.|++++++.|.+...
T Consensus 450 -~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 450 -LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp -CTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred -hhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0000011235889999999999999998866543
No 264
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.30 E-value=0.00026 Score=60.02 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=55.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+... ...+..++... ..+... ...|+++|+||+|+... .........+. +.
T Consensus 72 ~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 137 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQS--FQDIKPMRDQI-----IRVKRY---EKVPVILVGNKVDLESEREVSSSEGRALA----EE 137 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHHHHHH-----HHHTTT---SCCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEeCCCHHH--HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECCcccccccCCHHHHHHHH----HH
Confidence 445799999999987421 12222222211 011100 12389999999999753 22333334333 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 138 WG----CPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HT----SCEEEECTTCHHHHHHHHHHHHHH
T ss_pred hC----CCEEEecCCCCcCHHHHHHHHHHH
Confidence 33 358899999999999999887543
No 265
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.30 E-value=0.00013 Score=74.64 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=33.8
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE 340 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~ 340 (413)
++.+ ++.... ++++ +|+||+|||||+++|+|++.|++|.+...
T Consensus 20 l~~v-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 20 FFAR-TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEEE-EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred ccce-EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 4455 555555 5554 99999999999999999999999986543
No 266
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.30 E-value=5.9e-05 Score=65.07 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
.++++++|+|+.++. .+..++.... ..+ .|+++|+||+|+..........+.|. +..+
T Consensus 81 ~~~~~i~v~D~~~~~-----~~~~~~~~~~-------~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~- 138 (165)
T 2wji_A 81 KPDLVVNIVDATALE-----RNLYLTLQLM-------EMG-----ANLLLALNKMDLAKSLGIEIDVDKLE----KILG- 138 (165)
T ss_dssp CCSEEEEEEETTCHH-----HHHHHHHHHH-------HTT-----CCEEEEEECHHHHHHTTCCCCHHHHH----HHHT-
T ss_pred CCCEEEEEecCCchh-----HhHHHHHHHH-------hcC-----CCEEEEEEchHhccccChhhHHHHHH----HHhC-
Confidence 689999999998632 2222322210 013 38999999999863211111233332 2233
Q ss_pred CccceEEEeEEEeecCcchhccchhhh
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||+++.|++++++.+.+.
T Consensus 139 ---~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 139 ---VKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHHH
T ss_pred ---CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999887543
No 267
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.30 E-value=0.00018 Score=68.11 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368889999999999999999764
No 268
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.29 E-value=4.7e-05 Score=72.11 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=55.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|++++|+|+.+.. ....+...+... +. |+++|+||+|+............+ .+..
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~----------~~-----p~ivv~NK~Dl~~~~~~~~~~~~l----~~~l 141 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLEL----------GI-----PCIVALNMLDIAEKQNIRIEIDAL----SARL 141 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHH----------TC-----CEEEEEECHHHHHHTTEEECHHHH----HHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhc----------CC-----CEEEEEECccchhhhhHHHHHHHH----HHhc
Confidence 46899999999998732 112222222211 33 899999999986432111122222 2233
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
| ..++.+||++|.|+++|++.|.+....
T Consensus 142 g----~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 142 G----CPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp T----SCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred C----CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4 368999999999999999998665543
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.29 E-value=8.7e-05 Score=68.01 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
+.|++++ +|+||||||||+++|+|..++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3456555 999999999999999999875
No 270
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00013 Score=64.65 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=55.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+....+.+ .
T Consensus 96 ~~~~d~iilv~D~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~ 161 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRG-S-FEEVLPLKNIL-----DEIKKP---KNVTLILVGNKADLDHSRQVSTEEGEKLAT----E 161 (196)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHTT---SCCCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhhCC---CCCcEEEEEECcccccccccCHHHHHHHHH----H
Confidence 44579999999998743 1 12222222211 001100 12389999999999753 333344444433 2
Q ss_pred cCCCccceEEEeEEEeec-Ccchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNW-GLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~-Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++. |++++++.|.+.
T Consensus 162 ~~----~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 162 LA----CAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HT----SEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred hC----CeEEEECCCcCCcCHHHHHHHHHHH
Confidence 33 368899999999 999999887544
No 271
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.29 E-value=0.00043 Score=59.60 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~ 273 (413)
..+|.+++|+|+.+.. + ...+..++..... .. .. ...|+++|+||+|+... .........| .+..
T Consensus 79 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~----~~-~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 144 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQ-S-FNEVGKLFTQILR----VK-DR---DDFPVVLVGNKADLESQRQVPRSEASAF----GASH 144 (181)
T ss_dssp HHCSEEEEEEETTCHH-H-HHHHHHHHHHHHH----HH-TS---SCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred hhCCEEEEEEeCCCHH-H-HHHHHHHHHHHHH----hc-CC---CCCCEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 3479999999998732 1 1223333322100 00 01 12389999999999753 2333333333 2333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.|.+.
T Consensus 145 ~----~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 145 H----VAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3 368899999999999999888554
No 272
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.29 E-value=0.00026 Score=62.83 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 273
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.28 E-value=0.00071 Score=71.06 Aligned_cols=119 Identities=21% Similarity=0.172 Sum_probs=75.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+++|+|+.+.............. ..+. |+++|+||+|+.... .... ..++...
T Consensus 91 ~l~~aD~aILVVDa~~gv~~qt~~~~~~~~----------~~~i-----piIvViNKiDl~~a~--~~~v---~~ei~~~ 150 (599)
T 3cb4_D 91 SLAACEGALLVVDAGQGVEAQTLANCYTAM----------EMDL-----EVVPVLNKIDLPAAD--PERV---AEEIEDI 150 (599)
T ss_dssp HHHHCSEEEEEEETTTCCCTHHHHHHHHHH----------HTTC-----EEEEEEECTTSTTCC--HHHH---HHHHHHH
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHH----------HCCC-----CEEEeeeccCccccc--HHHH---HHHHHHH
Confidence 345579999999998865432222211111 1133 899999999997542 2222 2222233
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccC-------CcEEEEcC---CCCcHHHHHHHHHccCcC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR-------GNVWAIGA---QNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~-------g~~~~vG~---ng~GKSTLin~L~g~~~~ 332 (413)
.+. ...+++.+||++|.|+++|++.|.+..... -...++.. ++.|+.++++.+.|.+..
T Consensus 151 lg~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~ 219 (599)
T 3cb4_D 151 VGI-DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRK 219 (599)
T ss_dssp TCC-CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEES
T ss_pred hCC-CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEec
Confidence 332 223589999999999999999987665432 12233333 789999999999887754
No 274
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.28 E-value=0.00022 Score=62.03 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999854
No 275
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.28 E-value=9.3e-05 Score=73.00 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=32.4
Q ss_pred cchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 297 DDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 297 ~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+.+ ++....|. +.++|+||+|||||+|+|++.+++..|.+.
T Consensus 166 ~~l-~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 166 SFL-RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHH-HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHH-HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 555 55555565 555999999999999999999998888643
No 276
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.28 E-value=0.00029 Score=60.17 Aligned_cols=90 Identities=23% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~ 273 (413)
..+|++++|+|+.+.. + ...+..++..... ... ....|+++|+||+|+... ....+....+ .+..
T Consensus 74 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRR-S-FSKVPETLLRLRA-----GRP---HHDLPVILVGNKSDLARSREVSLEEGRHL----AGTL 139 (169)
T ss_dssp HHCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HST---TSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred ccCCEEEEEEECCChH-H-HHHHHHHHHHHHh-----ccc---CCCCCEEEEeeCcchhhcccCCHHHHHHH----HHHc
Confidence 3479999999998732 1 1223333322100 000 012489999999999743 3333444444 3333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.+.+.
T Consensus 140 ~----~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 140 S----CKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----CcEEEecCccCCCHHHHHHHHHHH
Confidence 3 368899999999999999887554
No 277
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00019 Score=64.12 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
No 278
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00025 Score=61.33 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999864
No 279
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.27 E-value=3.8e-05 Score=68.34 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=49.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++... . ... ....|+++|+||+|+.... ........+. +
T Consensus 102 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~---~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~ 166 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQE-S-FNNVKQWLQEI-----D---RYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA----D 166 (199)
T ss_dssp --CCCSEEEECC-CCCSH-H-HHHHHHHHHHH-----H---SCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHH----H
T ss_pred HhhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----H---Hhc-cCCCCEEEEEECccCCccccCCHHHHHHHH----H
Confidence 456789999999998742 2 23333333321 0 000 1124899999999997542 2222233332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|++++++.|.+...
T Consensus 167 ~~~----~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLG----IPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTT----CCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HcC----CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233 25778999999999999988865543
No 280
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.27 E-value=0.00014 Score=63.76 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=34.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|.+|||||||++.|.+... ....+..|++...+.+. .-...++||||..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~---------------~~~~~t~g~~~~~~~~~---~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI---------------SHITPTQGFNIKSVQSQ---GFKLNVWDIGGQR 71 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC---------------EEEEEETTEEEEEEEET---TEEEEEEECSSCG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---------------CcccCcCCeEEEEEEEC---CEEEEEEECCCCH
Confidence 4678899999999999999985310 01122344444444332 2346788999864
No 281
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.27 E-value=0.00041 Score=72.85 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=57.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+|+|+|+.+.............. ..+. |+++|+||+|+.... .. ....++.+.
T Consensus 93 ~l~~aD~aILVVDa~~gv~~qt~~~~~~a~----------~~~i-----piIvviNKiDl~~a~--~~---~v~~el~~~ 152 (600)
T 2ywe_A 93 ALAACEGALLLIDASQGIEAQTVANFWKAV----------EQDL-----VIIPVINKIDLPSAD--VD---RVKKQIEEV 152 (600)
T ss_dssp HHHTCSEEEEEEETTTBCCHHHHHHHHHHH----------HTTC-----EEEEEEECTTSTTCC--HH---HHHHHHHHT
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHH----------HCCC-----CEEEEEeccCccccC--HH---HHHHHHHHh
Confidence 455689999999998864322111111111 1133 899999999997542 22 222333333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+. ...+++.+||++|.|+++|++.|.+...
T Consensus 153 lg~-~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 153 LGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp SCC-CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCC-CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 343 2235899999999999999998876654
No 282
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.27 E-value=0.00049 Score=61.61 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=35.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....++++++|+|+.++..+ ...+.+++...... .... ....|+++|+||+|+.... ....+.+++..
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~----~~~~--~~~~piilv~nK~Dl~~~~-~~~~~~~~l~~ 142 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQRE-VKDVAEFLYQVLID----SMAL--KNSPSLLIACNKQDIAMAK-SAKLIQQQLEK 142 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHH----HHTS--TTCCEEEEEEECTTSTTCC-CHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCcCHH-HHHHHHHHHHHHhh----hhhc--ccCCCEEEEEECCCCCCcc-cHHHHHHHHHH
Confidence 35678999999999863211 11222222211100 0000 0124899999999997653 23344444443
No 283
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.26 E-value=0.00024 Score=60.48 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999854
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.26 E-value=0.00027 Score=60.65 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5788999999999999999953
No 285
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.25 E-value=4e-05 Score=71.91 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+.+.. ....+..++... + .|+++|+||+|+............+ .+..|
T Consensus 82 ~~~d~vi~VvDas~~~--~~~~l~~~l~~~----------~-----~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLE--RHLYLTSQLFEL----------G-----KPVVVALNMMDIAEHRGISIDTEKL----ESLLG 140 (256)
T ss_dssp SCCSEEEEEEEGGGHH--HHHHHHHHHTTS----------C-----SCEEEEEECHHHHHHTTCEECHHHH----HHHHC
T ss_pred CCCCEEEEEeeCCCch--hHHHHHHHHHHc----------C-----CCEEEEEEChhcCCcCCcHHHHHHH----HHHcC
Confidence 6799999999998731 112222222211 3 3899999999987542111222222 22334
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||+++.|+++|++.|.+.
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ----CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999998655
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=6.8e-05 Score=70.62 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=31.3
Q ss_pred hhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCC-CCCCc
Q 015085 294 SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAG-RGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~-~G~~~ 338 (413)
.+++.+ + ..+|.++ ++|+||+|||||+++|+|.+.+. +|.+.
T Consensus 15 ~vl~~i-~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 15 DKVLEL-C--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp THHHHG-G--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHH-h--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 455555 2 3455554 59999999999999999998876 77543
No 287
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.25 E-value=0.00027 Score=62.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999863
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.25 E-value=6.5e-05 Score=73.43 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=33.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ ++...++.++. +|+||||||||+|+|+|.+.+..|.+
T Consensus 42 ~~~l~~i-~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 42 RDLIDAV-LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HHHHHHH-GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhC-CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 4566666 45455666555 99999999999999999887777754
No 289
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.23 E-value=0.00034 Score=60.33 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999964
No 290
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.23 E-value=0.0004 Score=64.77 Aligned_cols=89 Identities=19% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 196 ARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
.+|++++|+|+.+.. .++ ..+.+++....... ...+ .|+++|+||+||... ..++ ..+.+.+...
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~---~~~~-----~piilV~NK~Dl~~~----~~v~-~~~~~~~~~~ 227 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQL---AKTK-----KPIVVVLTKCDEGVE----RYIR-DAHTFALSKK 227 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHHHHHHHHHHH---HHTT-----CCEEEEEECGGGBCH----HHHH-HHHHHHHTSS
T ss_pred cCCEEEEEEECCCCchhhH-HHHHHHHHHHHHHh---ccCC-----CCEEEEEEccccccc----HHHH-HHHHHHHhcC
Confidence 589999999998851 233 33444443221100 0012 389999999999632 2222 2223333221
Q ss_pred CCccceEEEeEEEeecCcchhccchhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...++.+||+++.|++++++.|.+
T Consensus 228 ---~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 228 ---NLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHH
Confidence 135889999999999999988754
No 291
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00037 Score=73.49 Aligned_cols=98 Identities=9% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHhhhcCCCcEEEEEEeCCCC--CCC--chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADF--DGS--FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRF 262 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~--~~s--~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l 262 (413)
+.....+..+|++|+|||+.+. ..+ ......+.+... ...+ .+++|+|+||+|+.... ...+.+
T Consensus 260 ~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-------~~lg----i~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 260 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSLG----IHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-------HTTT----CCEEEEEEECTTTTTTCHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-------HHcC----CCeEEEEEecccccchhHHHHHHH
Confidence 4556678889999999999862 111 111222221110 0012 23699999999998531 111233
Q ss_pred HHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhc
Q 015085 263 EHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 263 ~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll 296 (413)
...+..++...|... ...++.+||++|.|+.++.
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 444444555555321 2468999999999998763
No 292
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.23 E-value=0.00027 Score=59.94 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
No 293
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.23 E-value=0.00027 Score=59.84 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
No 294
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.22 E-value=0.00023 Score=62.44 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|.+|||||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999753
No 295
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.21 E-value=0.00024 Score=68.00 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 368889999999999999999864
No 296
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.21 E-value=4.7e-05 Score=74.79 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.+.++|++|||||||||.|++...+..|
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~ 103 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGH 103 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence 4556999999999999999986544433
No 297
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.21 E-value=0.00043 Score=66.26 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=56.6
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------C
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------S 256 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~ 256 (413)
...+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... .
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 288 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPA-SF-HHVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTP 288 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----SCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred HHhccCCCEEEEEEeCCCHH-HH-HHHHHHHHHHH-----HhhCCC-----CcEEEEEEchhcccccchhhhcccccccc
Confidence 34567899999999998742 11 1221 121111 111112 389999999999653 1
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........| .+..+ ...++.+||+++.|++++++.|.+..
T Consensus 289 v~~~~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 289 ITYPQGLAM----AKEIG---AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCHHHHHHH----HHHTT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHH----HHHcC---CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 122223333 23333 23689999999999999998885543
No 298
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.20 E-value=0.00038 Score=67.29 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+.....||+||+|++.++++|. ++.+.||+|.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~ 251 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD 251 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 4556789999999999999983 5788898874
No 299
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.19 E-value=0.00029 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999853
No 300
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00038 Score=61.39 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=35.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||+|.|.+.... ....+..|++.....+... ......++||||..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 6788999999999999999864311 0112334444433322211 11246789999964
No 301
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.18 E-value=0.00042 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.+.++|++|||||||+|.|++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 467799999999999999997653
No 302
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.18 E-value=0.0013 Score=66.24 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=55.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCch------HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH---
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFP------RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT--- 260 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~------~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~--- 260 (413)
....+..+|.+++|+|+.+. ++. ....+.+... ...+. +++++|+||+|+.......+
T Consensus 101 ~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~-------~~~~~----~~iivviNK~Dl~~~~~~~~~~~ 167 (435)
T 1jny_A 101 MITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILA-------KTMGL----DQLIVAVNKMDLTEPPYDEKRYK 167 (435)
T ss_dssp HHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHH-------HHTTC----TTCEEEEECGGGSSSTTCHHHHH
T ss_pred HHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHH-------HHcCC----CeEEEEEEcccCCCccccHHHHH
Confidence 34567889999999999973 221 1112211100 00122 36899999999986321222
Q ss_pred HHHHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhcc
Q 015085 261 RFEHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
.+.+.++.+++..+... ...++.+||++|.|+.++.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 168 EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 23334444555555311 14689999999999875543
No 303
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00096 Score=65.42 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=56.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....+|.+++|+|+.+..+-......+++.... ....+ .|+++|+||+|+... ..+.+.. ..++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~-----~~~~~-----~piilV~NK~Dl~~~----~~~~~~~-~~~~ 306 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH-----GEFKD-----LPFLVVINKIDVADE----ENIKRLE-KFVK 306 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH-----HHTTT-----SCEEEEECCTTTCCH----HHHHHHH-HHHH
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH-----HhcCC-----CCEEEEEECcccCCh----HHHHHHH-HHHH
Confidence 3444689999999988754311223333333210 00013 389999999999743 2232222 2233
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||++|.|+++|++.|.+..
T Consensus 307 ~~~----~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 EKG----LNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HTT----CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcC----CCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 333 3588999999999999999886544
No 304
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.16 E-value=0.0004 Score=58.99 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||+|.|.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999985
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.16 E-value=0.00034 Score=62.09 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|++|||||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57779999999999999999754
No 306
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=70.33 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
++.++|.+|+|||||+|+|++...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999999999987543
No 307
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.15 E-value=0.00044 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|+|||||+|.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3678899999999999999985
No 308
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.15 E-value=0.00036 Score=60.48 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6888999999999999999953
No 309
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.13 E-value=0.00065 Score=59.17 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=38.0
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCcc----ceEEEeEEEeecCcchhccchhhhc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKI----TKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~----~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
|+++|+||+|+.... ....+++ .+..+. .+ ..++.+||+++.|++++++.|.+..
T Consensus 124 piilv~nK~Dl~~~~--~~~~~~~----~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV--QEVINFL----AEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp CEEEEEECGGGCSCH--HHHHHHH----HHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEeehHhccCcH--HHHHHHH----HHHhhh-hhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 899999999997542 2233333 333442 11 2478999999999999998886544
No 310
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.13 E-value=0.00037 Score=60.98 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999953
No 311
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.13 E-value=0.00037 Score=61.12 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|+|||||+|.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57889999999999999999753
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.13 E-value=0.00018 Score=63.68 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccCc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+.++|+||||||||+++|+++++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999886
No 313
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.12 E-value=0.00045 Score=58.73 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|+|||||+|.|++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999985
No 314
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.12 E-value=0.00014 Score=71.94 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|.+|||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47789999999999999999753
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.12 E-value=0.0002 Score=64.22 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.++++|+||||||||+++|++.++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 456699999999999999998764
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.11 E-value=0.00042 Score=58.51 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 317
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00031 Score=62.06 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
No 318
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.00029 Score=62.69 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
No 319
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.00012 Score=66.15 Aligned_cols=28 Identities=39% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+|.+++ +|+||+|||||+++|++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4455554 999999999999999998875
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00023 Score=63.47 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.5
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.|.+++ +|+||||||||+++|++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 455555 9999999999999999986
No 321
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.11 E-value=0.00043 Score=71.75 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~~ 273 (413)
..+|++++|+|++++. ....+.+.+... ..+ .|+++|+||+|+.... ...+.+..+ +...
T Consensus 120 ~~~d~ii~V~D~s~~~--~~~~~~~~l~~~--------~~~-----~pvilV~NK~Dl~~~~~v~~~~~~~~----~~~~ 180 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDS--NKHYWLRHIEKY--------GGK-----SPVIVVMNKIDENPSYNIEQKKINER----FPAI 180 (535)
T ss_dssp HSSEEEEEEECGGGGG--GHHHHHHHHHHH--------SSS-----CCEEEEECCTTTCTTCCCCHHHHHHH----CGGG
T ss_pred cCCcEEEEEEeCCCch--hHHHHHHHHHHh--------CCC-----CCEEEEEECCCcccccccCHHHHHHH----HHhc
Confidence 4589999999998751 122333333221 112 3899999999997642 232233322 2223
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+ ..++.+||+++.|+++|++.|.+....
T Consensus 181 ~----~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 181 E----NRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp T----TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred C----CceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3 358999999999999999988765543
No 322
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.0004 Score=62.20 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
No 323
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.10 E-value=0.00062 Score=59.79 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999964
No 324
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.09 E-value=0.00031 Score=60.57 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 325
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.09 E-value=0.00063 Score=67.10 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=58.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHH---HHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRK---VAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~---l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
.+...+..+|++++|+|+.+........ +.+++... +. ...|+++|+||+|++... .......
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----------~~--~~~p~ilV~NK~Dl~~~~--~~~~~~~ 315 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREI----------GV--SGKPILVTLNKIDKINGD--LYKKLDL 315 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----------TC--CSCCEEEEEECGGGCCSC--HHHHHHH
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----------Cc--CCCCEEEEEECCCCCCch--HHHHHHH
Confidence 3445677899999999998743111222 22222211 11 113899999999998542 1221122
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.....+..+. ....++.+||+++.|+++|++.|.+..
T Consensus 316 ~~~l~~~l~~-~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 316 VEKLSKELYS-PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHCS-CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 2122232210 113578999999999999998886544
No 326
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.08 E-value=0.00026 Score=69.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999854
No 327
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.08 E-value=0.00039 Score=61.00 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999853
No 328
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00032 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368889999999999999999643
No 329
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.07 E-value=0.00086 Score=58.73 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 330
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.07 E-value=0.00064 Score=58.87 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 678899999999999999984
No 331
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.06 E-value=0.00062 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
No 332
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.06 E-value=0.00036 Score=60.51 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.-++.++|.+|||||||+|.+.+... ....+..|.+...+.+. .....++||||..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~---------------~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV---------------VTTKPTIGFNVETLSYK---NLKLNVWDLGGQT 73 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE---------------EEECSSTTCCEEEEEET---TEEEEEEEEC---
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc---------------CccCCcCccceEEEEEC---CEEEEEEECCCCH
Confidence 34678899999999999999984210 11122233333333331 2346789999975
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.05 E-value=0.00022 Score=66.03 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=22.7
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
|...+++.+ ++....|.++. +|+||||||||+++|++.+
T Consensus 10 ~~~~~l~~i-sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENL-YFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecce-eccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567777 67777777655 9999999999999999865
No 334
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.05 E-value=0.00032 Score=66.45 Aligned_cols=96 Identities=20% Similarity=0.141 Sum_probs=53.5
Q ss_pred HHHHhhhcCCCc-EEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 187 GRKLMSASGARS-VVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 187 ~~~~~~~~~~~d-lVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
...+...+..++ +|++|+|+.+.....+ ..+.+.+.. .+ .|+++|+||+|+...... ..+
T Consensus 152 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----------~~-----~~~i~V~NK~Dl~~~~~~---~~~ 213 (299)
T 2aka_B 152 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----------QG-----QRTIGVITKLDLMDEGTD---ARD 213 (299)
T ss_dssp HHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----------TC-----SSEEEEEECGGGSCTTCC---CHH
T ss_pred HHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----------CC-----CeEEEEEEccccCCCCch---HHH
Confidence 344445555555 5558999976432222 123333221 12 389999999999865321 122
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+++....... .+...++.+||+++.|++++++.|.+
T Consensus 214 ~~~~~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 214 VLENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHTTCSSCCT-TCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHhCCcCcCC-CCcEEEECCChhhccccccHHHHHHH
Confidence 2221000000 01235778999999999999888743
No 335
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.04 E-value=0.00043 Score=59.80 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
No 336
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.04 E-value=0.0005 Score=59.90 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=35.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|..|||||||+|.|.+... ....+..|++...+.+. .....++||||..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV---------------VHTSPTIGSNVEEIVIN---NTRFLMWDIGGQE 76 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC---------------EEEECCSSSSCEEEEET---TEEEEEEEESSSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---------------CccCCcCceeeEEEEEC---CEEEEEEECCCCH
Confidence 3688899999999999999995321 11122334443333331 2346789999974
No 337
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.04 E-value=0.00016 Score=70.79 Aligned_cols=56 Identities=29% Similarity=0.192 Sum_probs=36.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc--cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP--AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~--~~~~liDtpGl~ 379 (413)
+|.++|.+|||||||||+|++.. ..++..+.||++.......++ ....++||||+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~----------------~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK----------------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC----------------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC----------------CccccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 68889999999999999998532 122344555543321111122 357899999974
No 338
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.04 E-value=0.00022 Score=65.22 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=18.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHH-ccC
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIA-KSV 330 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~-g~~ 330 (413)
++....|.+++ +|+||||||||+++|+ +..
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44455677665 9999999999999999 887
No 339
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.03 E-value=0.00049 Score=72.29 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=45.7
Q ss_pred hhcCCCcEEEEEEeCCCCC-------CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH-
Q 015085 192 SASGARSVVLMVVDAADFD-------GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE- 263 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~-------~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~- 263 (413)
..+..+|++|+|||+.+.. .........++... +. +++|+|+||+|+... ....+.
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----------gi----p~iIvviNKiDl~~~--~~~~~~~ 337 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----------GI----SEIVVSVNKLDLMSW--SEDRFQE 337 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----------SC----CCEEEEEECGGGGTT--CHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----------CC----CeEEEEEeccccccc--cHHHHHH
Confidence 3455789999999998643 22223333332221 32 249999999999753 223332
Q ss_pred --HHHHHHH-HHcCCC-ccceEEEeEEEeecCcc
Q 015085 264 --HWVRQRA-REDGIS-KITKLHFVSAVKNWGLK 293 (413)
Q Consensus 264 --~~~~~~~-~~~g~~-~~~~V~~vSa~~~~Gi~ 293 (413)
..+..++ +..|.. ....++.+||++|.|+.
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2233333 333431 11268999999999997
No 340
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.03 E-value=0.00025 Score=75.86 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..-.+.++|..|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467889999999999999999754
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00072 Score=57.57 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999996
No 342
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.02 E-value=0.00059 Score=60.32 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3678899999999999999995
No 343
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.01 E-value=0.00014 Score=68.22 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=53.6
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+.++. ....++.... ..+ .|+++|+||+|+............+ .+..|
T Consensus 82 ~~~d~ii~V~D~t~~~-----~~~~~~~~l~-------~~~-----~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg 140 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-----QSLYLLLEIL-------EME-----KKVILAMTAIDEAKKTGMKIDRYEL----QKHLG 140 (258)
T ss_dssp SCCSEEEEEEETTSCH-----HHHHHHHHHH-------TTT-----CCEEEEEECHHHHHHTTCCBCHHHH----HHHHC
T ss_pred cCCCEEEEEeCCCchh-----hHHHHHHHHH-------hcC-----CCEEEEEECcCCCCccchHHHHHHH----HHHcC
Confidence 5789999999998742 1112221110 013 3899999999986431111112333 33344
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|+++|++.+.+..
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 ----IPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 3689999999999999999886654
No 344
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.01 E-value=0.00063 Score=71.40 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=56.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-------------
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS------------- 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~------------- 258 (413)
+.+..+|.+++|+|+.+..........+++.. .+. |+++|+||+|+.+....
T Consensus 89 r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~----------~~v-----PiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 89 RGGALADLAILIVDINEGFKPQTQEALNILRM----------YRT-----PFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----CEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH----------cCC-----eEEEEecccccccccccccCCchHHHHHHh
Confidence 34567899999999998543222222233221 133 89999999999753210
Q ss_pred hHHH----HHHHH---HHHHHcCCC-----------ccceEEEeEEEeecCcchhccchhhh
Q 015085 259 PTRF----EHWVR---QRAREDGIS-----------KITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l----~~~~~---~~~~~~g~~-----------~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...+ .+.+. ..+...++. ....++.+||++|.|+++|++.|..+
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0111 11111 112222221 22368999999999999998888643
No 345
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00063 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g 328 (413)
..++.++|..|||||||+|.|.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34678899999999999999994
No 346
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.98 E-value=0.00044 Score=70.37 Aligned_cols=97 Identities=6% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCC--ch--HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH---H
Q 015085 189 KLMSASGARSVVLMVVDAADFDGS--FP--RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT---R 261 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s--~~--~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~---~ 261 (413)
.....+..+|++|+|+|+.+.... +. ....+.+... ...+. +++++|+||+|+... ..+ .
T Consensus 101 ~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-------~~~~v----~~iivviNK~Dl~~~--~~~~~~~ 167 (458)
T 1f60_A 101 NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-------FTLGV----RQLIVAVNKMDSVKW--DESRFQE 167 (458)
T ss_dssp HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-------HHTTC----CEEEEEEECGGGGTT--CHHHHHH
T ss_pred HHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-------HHcCC----CeEEEEEEccccccC--CHHHHHH
Confidence 344567889999999999863210 00 0111111110 00122 259999999999742 122 2
Q ss_pred HHHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhccc
Q 015085 262 FEHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLIDD 298 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll~~ 298 (413)
+.+.++.+++..+... ...++.+||++|.|+.++...
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~ 205 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN 205 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc
Confidence 3333344445555311 136899999999999877654
No 347
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.98 E-value=0.00077 Score=59.66 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
No 348
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.98 E-value=0.00064 Score=59.74 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.++.++|..|||||||++.|++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36788999999999999999853
No 349
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.98 E-value=0.00041 Score=66.66 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=36.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|.+++.... ..+..+++|++.......+ .-...++||||..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 5788999999999999999854211 1223456666543322111 2246789999975
No 350
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.97 E-value=0.00075 Score=59.02 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g 328 (413)
.-++.++|.+|||||||+|.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34688899999999999999963
No 351
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.97 E-value=0.00021 Score=78.45 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=52.2
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC-CCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR-GGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~-G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
+.+.+ ++....|++++ +|+||+||||||+++.+...... | ..+|..... +.+ . ..+
T Consensus 662 V~ndv-sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------------~~vpa~~~~-i~~---~---d~i 719 (918)
T 3thx_B 662 VPNNT-DLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------------SYVPAEEAT-IGI---V---DGI 719 (918)
T ss_dssp CCEEE-EECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------------CCBSSSEEE-EEC---C---SEE
T ss_pred ecccc-cccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------------ccccchhhh-hhH---H---HHH
Confidence 33444 45555677666 99999999999999875321100 1 111211111 111 1 123
Q ss_pred ccccccc-CCCCCCCCCCHHHHHHHHHhhhh-cCCccccCCCC
Q 015085 373 FDTPGLL-HPNQITTRLTREEQKLVNINKEL-KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l-~~~~~~l~~~~ 413 (413)
+...|+. ...+..+.+|+|+++++.+.+++ .+..+.||+|+
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~ 762 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELG 762 (918)
T ss_dssp EEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTT
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 3333433 22345677889999998888765 67778888774
No 352
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.97 E-value=0.00053 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|.+|||||||+|.|.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57789999999999999998543
No 353
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.97 E-value=0.00043 Score=60.86 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999963
No 354
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.97 E-value=0.0012 Score=73.57 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.....+..+|.+|+|||+.+.......+...++... +. | +|+|+||+|+.......+.+..-++
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l----------gI-----P~IIVVINKiDLv~d~e~le~i~eEi~ 439 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV----------GV-----PYIIVFLNKCDMVDDEELLELVEMEVR 439 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH----------TC-----SCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc----------CC-----CeEEEEEeecccccchhhHHHHHHHHH
Confidence 344567889999999999986544333333333221 33 5 8999999999752100111222333
Q ss_pred HHHHHcCCC-ccceEEEeEEEee--------cCcchhccchhhh
Q 015085 268 QRAREDGIS-KITKLHFVSAVKN--------WGLKSLIDDVVDL 302 (413)
Q Consensus 268 ~~~~~~g~~-~~~~V~~vSa~~~--------~Gi~~Ll~~I~~l 302 (413)
.+++..+.. ....++.+||++| .|+.+|++.|.+.
T Consensus 440 elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 440 ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 445555431 1246899999998 3567787777553
No 355
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.96 E-value=0.00081 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|.+|||||||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999999853
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.0005 Score=60.53 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHcc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~ 329 (413)
.+|.+++ +|+||||||||+++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3455544 999999999999999987
No 357
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.95 E-value=0.00077 Score=58.67 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999963
No 358
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0005 Score=62.25 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+++++|..|||||||++.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 359
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00081 Score=58.77 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6888999999999999999864
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.94 E-value=0.00078 Score=57.13 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 477899999999999999985
No 361
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.0015 Score=59.24 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|..+.. ++ ..+..+.... ...... ...|+++|+||+||... ....+..+.|. .
T Consensus 108 ~~~~a~~~ilVydvt~~~-sf-~~~~~~~~~l-----~~~~~~---~~~piilVgNK~DL~~~r~v~~~e~~~~a----~ 173 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRA-SF-EKASELRIQL-----RRARQT---EDIPIILVGNKSDLVRCREVSVSEGRACA----V 173 (211)
T ss_dssp CCCCCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HTSGGG---TTSCEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HHhhCCEEEEEEECCCHH-HH-HHHHHHHHHH-----HHHhCC---CCCcEEEEEEChHHhcCceEeHHHHHHHH----H
Confidence 345689999999988632 22 2222222111 000000 11389999999999743 23333333332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 174 ~~~----~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 174 VFD----CKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp HHT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233 357889999999999999887543
No 362
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.94 E-value=0.00053 Score=64.62 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCcEEEEEEeCCC-CCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH---HHHHHH
Q 015085 196 ARSVVLMVVDAAD-FDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VRQRAR 271 (413)
Q Consensus 196 ~~dlVl~VvD~~d-~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~---~~~~~~ 271 (413)
++|++++++|... .....+..+.+.+.. + .|+++|+||+|++.. ..+..+ +.+.+.
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----------~-----~pvi~V~nK~D~~~~----~e~~~~~~~i~~~l~ 174 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----------K-----VNIIPLIAKADTLTP----EECQQFKKQIMKEIQ 174 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT-----------T-----SCEEEEESSGGGSCH----HHHHHHHHHHHHHHH
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc-----------c-----CCEEEEEeccCCCCH----HHHHHHHHHHHHHHH
Confidence 3568888887654 222233344443321 2 389999999999743 333332 233333
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+|+.++.|+.++.+.|.+..
T Consensus 175 ~~~----i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 175 EHK----IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HTT----CCCCCC-----------CHHHHHTC
T ss_pred HcC----CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 444 2467789999999999998886543
No 363
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.92 E-value=0.00024 Score=67.90 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=57.1
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCC-C-CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFD-G-SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~-~-s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
+.+.+...+...+..+|++++|+|+.+.. . .....+.+++... + .|+++|+||+|+......
T Consensus 153 ~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~----------~-----~~~i~v~NK~Dl~~~~~~- 216 (315)
T 1jwy_B 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE----------G-----KRTIGVITKLDLMDKGTD- 216 (315)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS----------C-----SSEEEEEECTTSSCSSCC-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC----------C-----CcEEEEEcCcccCCcchH-
Confidence 33445566777788899999999974322 2 2223455544321 2 389999999999865321
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEe---ecCcchhccchhhhc
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVK---NWGLKSLIDDVVDLA 303 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~---~~Gi~~Ll~~I~~l~ 303 (413)
..++++......+ ..+..+..+|+.. +.|+.++++.+..+.
T Consensus 217 --~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 217 --AMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp --CHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred --HHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 1222221100000 1223445556655 566677776665544
No 364
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.91 E-value=0.00011 Score=64.45 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH----HHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE----HWVRQRAR 271 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~----~~~~~~~~ 271 (413)
.++++++|+|+++...++ ..+..++..... ...+ .|+++|+||+|+... ..+. .....+.+
T Consensus 79 ~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~-----~~~~-----~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~ 143 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEV-DAMKPWLFNIKA-----RASS-----SPVILVGTHLDVSDE----KQRKACMSKITKELLN 143 (184)
T ss_dssp HSEEEEEEEEGGGCHHHH-HTHHHHHHHHHH-----HCTT-----CEEEEEEECGGGCCH----HHHHHHHHHHHHHTTT
T ss_pred CCcEEEEEEeCCcchhHH-HHHHHHHHHHHh-----hCCC-----CcEEEEEECCCcccc----hhhHHHHHHHHHHHHH
Confidence 478999999998742222 233344332110 0012 389999999999642 2221 11222222
Q ss_pred HcCCCccceEEEeEEEeec-Ccchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNW-GLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~-Gi~~Ll~~I~~l 302 (413)
..+......++.+||+++. ++++|++.|.+.
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 144 KRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred hcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 2232111247889999996 888888877544
No 365
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.91 E-value=0.00096 Score=58.51 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999853
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.90 E-value=0.00098 Score=59.11 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6788999999999999999963
No 367
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.90 E-value=0.00043 Score=61.49 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5788999999999999999753
No 368
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.00045 Score=71.22 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=27.5
Q ss_pred cCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 305 ~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..|. +.++|+||||||||+++|+++.++..|.+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii 291 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV 291 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence 4444 66699999999999999999998887743
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.89 E-value=0.0003 Score=62.94 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+.++|+||+|||||++.|+|.+. .+| +.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~ 31 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VP 31 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EE
Confidence 356699999999999999999987 777 54
No 370
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.88 E-value=0.00019 Score=67.95 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+++.. ....+..... ..+. |+++|+||+|+............+. +..|
T Consensus 79 ~~~d~vi~V~D~t~~e-----~~~~~~~~l~-------~~~~-----p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg 137 (272)
T 3b1v_A 79 QRADSILNVVDATNLE-----RNLYLTTQLI-------ETGI-----PVTIALNMIDVLDGQGKKINVDKLS----YHLG 137 (272)
T ss_dssp TCCSEEEEEEEGGGHH-----HHHHHHHHHH-------HTCS-----CEEEEEECHHHHHHTTCCCCHHHHH----HHHT
T ss_pred CCCCEEEEEecCCchH-----hHHHHHHHHH-------hcCC-----CEEEEEEChhhCCcCCcHHHHHHHH----HHcC
Confidence 4689999999998631 2222221110 0133 8999999999864311111233332 2234
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|++++++.|.+..
T Consensus 138 ----~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ----VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ----SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ----CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3689999999999999999886644
No 371
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.88 E-value=0.001 Score=59.41 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999953
No 372
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00046 Score=60.73 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEE-EEcCCCCcHHHHHHHHHccCc
Q 015085 307 GNVW-AIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 307 g~~~-~vG~ng~GKSTLin~L~g~~~ 331 (413)
|+++ ++|+||||||||++.|++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444 499999999999999998764
No 373
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.87 E-value=0.00095 Score=57.88 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
No 374
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.87 E-value=0.00031 Score=68.87 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
.+++.+ +...+|+++. +|+||+|||||+++|+|...++.|.
T Consensus 60 ~ald~l--l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 60 RAIDGL--LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp HHHHHH--SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEEEee--eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 455555 3445566555 9999999999999999999887764
No 375
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.87 E-value=0.00031 Score=60.57 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
No 376
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00041 Score=66.98 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=58.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecc--cccc------ccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEG--VLPA------QAKLF 373 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~--~l~~------~~~li 373 (413)
.+|.+++ +|+||||||||+++|.|++.+..|. ..+..+... .++.+.++.+.... .... ...++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4556555 9999999999999999999876552 011111111 12222222211100 0000 01222
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 374 DTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 374 DtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+-...+.....||+|++|++.+++++ .++.+.+++|+
T Consensus 163 ~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~ 204 (312)
T 3aez_A 163 TSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLN 204 (312)
T ss_dssp HHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTT
T ss_pred HHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCcc
Confidence 22221122355678999999999998887 46777777663
No 377
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0011 Score=58.33 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 678899999999999999986
No 378
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.86 E-value=0.00076 Score=59.73 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36888999999999999999864
No 379
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0011 Score=58.18 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.|.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999999999999954
No 380
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.85 E-value=0.0016 Score=59.79 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 184 HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 184 ~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+.+.+.+......++++|+|+|+.++.. .+..+.+.+....... .. .|+++|+||+|++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-----~~-----~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-----AR-----SFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-----HG-----GGEEEEEECGGGC--
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-----cc-----ceEEEEEeCCccCCc
Confidence 3455555566678899999999986543 2223333322111110 01 289999999999864
No 381
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.00021 Score=62.44 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
.++++++|+|+.++ ..+..++.... ..+ .|+++|+||+|+..........+.+. +..+
T Consensus 85 ~~~~~i~v~d~~~~-----~~~~~~~~~~~-------~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATAL-----ERNLYLTLQLM-------EMG-----ANLLLALNKMDLAKSLGIEIDVDKLE----KILG- 142 (188)
T ss_dssp CCSEEEEEEEGGGH-----HHHHHHHHHHH-------TTT-----CCEEEEEECHHHHHHTTCCCCHHHHH----HHHT-
T ss_pred CCCEEEEEecchhH-----HHHHHHHHHHH-------hcC-----CCEEEEEEhhhccccccchHHHHHHH----HHhC-
Confidence 57999999999763 22223322210 012 38999999999864311112233332 2233
Q ss_pred CccceEEEeEEEeecCcchhccchhhhccc
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
..++.+||+++.|++++++.+.+....
T Consensus 143 ---~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 ---VKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred ---CCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 368899999999999999988665544
No 382
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.85 E-value=0.00084 Score=73.88 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.8
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHH
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIA 327 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~ 327 (413)
++....|++++ +|+||+||||||+++.
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45555667766 9999999999999983
No 383
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.84 E-value=0.00033 Score=71.58 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.0
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
..+|.+++ +|+||||||||++.|+|++.+..|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 45566665 999999999999999999988777644
No 384
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.84 E-value=0.0018 Score=65.87 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=52.1
Q ss_pred hhhcCCCcEEEEEEeCCCCCC-------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH-
Q 015085 191 MSASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF- 262 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~-------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l- 262 (413)
...+..+|++|+|||+.+..+ ....+...++.. .+. +++++|+||+|+.......+.+
T Consensus 139 ~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----------~~v----p~iivviNK~Dl~~~~~~~~~~~ 204 (467)
T 1r5b_A 139 INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------QGI----NHLVVVINKMDEPSVQWSEERYK 204 (467)
T ss_dssp ---TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------TTC----SSEEEEEECTTSTTCSSCHHHHH
T ss_pred HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----------cCC----CEEEEEEECccCCCccccHHHHH
Confidence 345678999999999987531 112222222211 132 2399999999996432222222
Q ss_pred --HHHHHHHHHHc-CCC--ccceEEEeEEEeecCcchhcc
Q 015085 263 --EHWVRQRARED-GIS--KITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 263 --~~~~~~~~~~~-g~~--~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
..-++.+++.. |+. .-..++.+||++|.|+.++++
T Consensus 205 ~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 205 ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 22233344444 432 023588999999999987653
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.84 E-value=0.00097 Score=57.70 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.83 E-value=0.00028 Score=73.05 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=52.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc-CCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPN 382 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~ 382 (413)
.+|++++ +|+||+|||||++.|++...+. |.. +-.+.....+..-.... ....+. ...+. ..|+. ..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~------vi~~~~ee~~~~l~~~~-~~~g~~-~~~~~-~~g~~~~~~ 348 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-KER------AILFAYEESRAQLLRNA-YSWGMD-FEEME-RQNLLKIVC 348 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCC------EEEEESSSCHHHHHHHH-HTTSCC-HHHHH-HTTSEEECC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCC------EEEEEEeCCHHHHHHHH-HHcCCC-HHHHH-hCCCEEEEE
Confidence 4567666 9999999999999999987653 520 00000000000000000 000000 00000 12222 223
Q ss_pred CCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 383 QITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
..+..||+|++|++++++++ .|+.+.||
T Consensus 349 ~~p~~LS~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 349 AYPESAGLEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 45678999999999999997 57777777
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.83 E-value=0.00026 Score=65.90 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEE-cccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVT-KIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViN-K~DLl~~~~~~~~l~~ 264 (413)
+.+.+...+..+|++|+|+|+.++ ......+.+++....... .+ .++++|+| |+|+.... +..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~-~~~~~~~~~~l~~~~~~~-----~~-----~~~i~vv~nK~Dl~~~~-----~~~ 158 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRY-TSQDQQAAQRVKEIFGED-----AM-----GHTIVLFTHKEDLNGGS-----LMD 158 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCC-CHHHHHHHHHHHHHHCGG-----GG-----GGEEEEEECGGGGTTCC-----HHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCC-CHHHHHHHHHHHHHhCch-----hh-----ccEEEEEEcccccCCcc-----HHH
Confidence 345555677889999999999863 222333444443221000 01 26788888 99997431 222
Q ss_pred HH--------HHHHHHcCCC-c-cceEEEeEEEeecCcchhccchhhhccc
Q 015085 265 WV--------RQRAREDGIS-K-ITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 265 ~~--------~~~~~~~g~~-~-~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
|+ +..++..+.. . +.. +.+||+++.|++++++.|.++...
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 159 YMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 22 1233333311 0 112 568999999999998888665543
No 388
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.83 E-value=0.0004 Score=67.78 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=27.4
Q ss_pred cchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCC
Q 015085 292 LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG 333 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~ 333 (413)
...++..+ .+...++. +.++|++|+|||||+|.|++...+.
T Consensus 42 ~~~~~~~l-~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 42 STQLLDAI-MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHHHHHH-GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34445444 33334444 4459999999999999999766443
No 389
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.83 E-value=0.0011 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3678899999999999999985
No 390
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.83 E-value=0.00043 Score=67.98 Aligned_cols=87 Identities=20% Similarity=0.050 Sum_probs=51.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH---HHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VRQRA 270 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~---~~~~~ 270 (413)
+..+|+|++|+|+...... ..+...+. + .|+++|+||+|+.+. ...... +...+
T Consensus 190 ~~~aD~vl~V~d~~~~~~~--~~l~~~~~------------~-----~p~ivVlNK~Dl~~~----~~~~~~~~~l~~~l 246 (355)
T 3p32_A 190 ANMVDTFVLLTLARTGDQL--QGIKKGVL------------E-----LADIVVVNKADGEHH----KEARLAARELSAAI 246 (355)
T ss_dssp HTTCSEEEEEEESSTTCTT--TTCCTTSG------------G-----GCSEEEEECCCGGGH----HHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEECCCCCccH--HHHHHhHh------------h-----cCCEEEEECCCCcCh----hHHHHHHHHHHHHH
Confidence 4779999999998653221 11111111 1 278999999998642 222222 22222
Q ss_pred HHcCC--Cc-cceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGI--SK-ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~--~~-~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...+. .. ...|+.+||+++.|+++|++.|.++.
T Consensus 247 ~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 247 RLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 21110 00 13689999999999999999986654
No 391
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.83 E-value=0.0011 Score=71.43 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=48.6
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHccCc-CCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCC
Q 015085 307 GNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQI 384 (413)
Q Consensus 307 g~~~~-vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~ 384 (413)
|++++ +|+||+|||||+++|+|... +..|.+. |... ..+.+ .+ .++...|+. +.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--------------pa~~-~~i~~---v~---~i~~~~~~~--d~l 632 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--------------PAEE-AHLPL---FD---GIYTRIGAS--DDL 632 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--------------SSSE-EEECC---CS---EEEEECCC------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--------------ehhc-cceee---HH---HhhccCCHH--HHH
Confidence 56555 99999999999999998763 4445211 1111 01111 11 122222222 234
Q ss_pred CCCCCHHHHHHHHHhhhh----cCCccccCCC
Q 015085 385 TTRLTREEQKLVNINKEL----KPRTYRIKVS 412 (413)
Q Consensus 385 ~~~LS~ge~q~v~i~r~l----~~~~~~l~~~ 412 (413)
...+|.++.+++.+++.+ .+..+.||+|
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 556788988888888887 6778888877
No 392
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.82 E-value=0.00022 Score=61.97 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=9.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.|.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999984
No 393
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.82 E-value=0.00066 Score=60.48 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5788999999999999999853
No 394
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0012 Score=58.91 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578899999999999999985
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.82 E-value=0.00053 Score=68.93 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=27.7
Q ss_pred cCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 305 ~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
..+. +.++|+||+|||||+++|++.+.+..|.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 3445 455999999999999999999988877643
No 396
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.81 E-value=0.00039 Score=67.64 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+|++++ +|+||||||||++.|++.+.+..|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 4566665 999999999999999999988877644
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.80 E-value=0.00055 Score=60.17 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6888999999999999999963
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.79 E-value=0.0013 Score=57.88 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6788999999999999999863
No 399
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.77 E-value=0.0004 Score=62.66 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=36.2
Q ss_pred cEEEEcCCCCcHHHHHHHHH-ccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIA-KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~-g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|.++ +... ....+..|+|.....+..... -...++||||...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE---------------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT---------------CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 57889999999999999944 3211 112344566665544322111 1367899999653
No 400
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.77 E-value=0.0001 Score=76.42 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=55.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC--hHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS--PTRFEHWVRQR 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~--~~~l~~~~~~~ 269 (413)
..+..+|++++|+|+.+..+.......+.+.. .+ .|+++|+||+|+...... ...+..+. ..
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~----------~~-----vPiIVViNKiDl~~~~~~~v~~~l~~~~-~~ 134 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKD----------AH-----VPIVLAINKCDKAEADPEKVKKELLAYD-VV 134 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT----------TT-----CCEEECCBSGGGTTTSCCSSSSHHHHTT-SC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHH----------cC-----CcEEEEEecccccccchHHHHHHHHhhh-hh
Confidence 35567899999999998554333333332221 13 289999999999753211 11121110 00
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...++ ....++.+||++|.|+++|++.|..+
T Consensus 135 ~e~~~--~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 135 CEDYG--GDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp CCCSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred HHhcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence 00111 12368889999999999998888554
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.75 E-value=0.0012 Score=57.85 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6788999999999999999853
No 402
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.001 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36888999999999999999854
No 403
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.0011 Score=59.13 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36888999999999999999963
No 404
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.73 E-value=0.00063 Score=61.00 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999953
No 405
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=59.65 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.|.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 678899999999999999985
No 406
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.71 E-value=0.00084 Score=60.22 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||+|.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678899999999999999984
No 407
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.71 E-value=0.00077 Score=59.95 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.|.++ ++|++||||||+++.|.+...+..|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45554 4999999999999999998754433
No 408
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.0007 Score=61.16 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
..|++++ +|+||+|||||++.|++...+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567666 999999999999999986544
No 409
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.70 E-value=0.00054 Score=69.28 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=33.1
Q ss_pred chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ +...+|+++ ++|+||+|||||+++|+|+..++.|.+
T Consensus 145 ~~vld~v--l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 145 VRAINAL--LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp CHHHHHH--SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred ceEEeee--EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 3456666 444556655 599999999999999999998887754
No 410
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.70 E-value=0.0013 Score=60.91 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=55.9
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH
Q 015085 184 HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE 263 (413)
Q Consensus 184 ~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~ 263 (413)
+.+.+.+......+|++|+|+|+.++. ..+..+.+++........ .+ .++++|.||+|+.... ..+.+.
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~-~~~~~~~~~l~~~~~~~~----~~-----~~iilv~nK~Dl~~~~-~~~~l~ 161 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGRFT-AQDQQAVRQVRDMFGEDV----LK-----WMVIVFTRKEDLAGGS-LHDYVS 161 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTBCC-HHHHHHHHHHHHHHCGGG----GG-----GEEEEEECGGGGTTCC-HHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCCCC-HHHHHHHHHHHHHhChhh----hc-----cEEEEEEchHhcCCCC-HHHHHh
Confidence 333344444558899999999998642 223344444433210000 01 3899999999996532 111111
Q ss_pred ----HHHHHHHHHcCCCccceEEEeEEE-----eecCcchhccchhhhcc
Q 015085 264 ----HWVRQRAREDGISKITKLHFVSAV-----KNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 264 ----~~~~~~~~~~g~~~~~~V~~vSa~-----~~~Gi~~Ll~~I~~l~~ 304 (413)
..++...+..|. .++.++.. ++.|+.+|++.|.++..
T Consensus 162 ~~~~~~l~~l~~~~g~----~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG----RVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT----CEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC----eEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 123334444442 24444432 24677777777765554
No 411
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.70 E-value=0.00087 Score=66.25 Aligned_cols=92 Identities=5% Similarity=0.002 Sum_probs=52.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcE-EEEEE-cccCCCCCCChHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRV-VLVVT-KIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~v-ilViN-K~DLl~~~~~~~~l~~~~~~~ 269 (413)
..+..+|.+++|+| .+.......+...++... +. |. ++|+| |+|+ ... ..+.+.+-++++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~----------~i-----~~~ivvvNNK~Dl-~~~-~~~~~~~~i~~~ 140 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLL----------GF-----KHGIIALTRSDST-HMH-AIDELKAKLKVI 140 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT----------TC-----CEEEEEECCGGGS-CHH-HHHHHHHHHHHH
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc----------CC-----CeEEEEEEeccCC-CHH-HHHHHHHHHHHH
Confidence 34567899999999 653322222222222211 32 55 99999 9999 421 001111222222
Q ss_pred HHHcCCCccceEEE--eEEEe---ecCcchhccchhhh
Q 015085 270 AREDGISKITKLHF--VSAVK---NWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~--vSa~~---~~Gi~~Ll~~I~~l 302 (413)
++..+. ....++. +||++ +.|+++|++.|.++
T Consensus 141 l~~~~~-~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 141 TSGTVL-QDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp TTTSTT-TTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHhcCC-CceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 222221 1247899 99999 99999888877544
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.69 E-value=0.00092 Score=57.73 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46888999999999999999853
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.68 E-value=0.00078 Score=64.74 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=26.8
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCc--CCCCCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVD--AGRGGD 337 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~--~~~G~~ 337 (413)
.++.+++ +|+||||||||+++|.+++. +.+|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 3455554 99999999999999999887 777764
No 414
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.67 E-value=0.0015 Score=67.90 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|..|+|||||||.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999754
No 415
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.67 E-value=0.0013 Score=58.42 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999964
No 416
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.66 E-value=0.0009 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367889999999999999999643
No 417
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.00082 Score=61.55 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHH--cc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIA--KS 329 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~--g~ 329 (413)
.+|++++ +|+||||||||+++|+ +.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567666 9999999999999999 55
No 418
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.65 E-value=0.00059 Score=67.27 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=61.4
Q ss_pred hhhcCCCcEEEEEEeCCCCCCC--------chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------
Q 015085 191 MSASGARSVVLMVVDAADFDGS--------FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------- 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s--------~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------- 255 (413)
....+.++.||+|+|+++++.. .......++...... .+-.+ .|+|+|+||+||...
T Consensus 219 ~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~---~~~~~-----~piILv~NK~DL~~~ki~~~~l 290 (362)
T 1zcb_A 219 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN---RVFSN-----VSIILFLNKTDLLEEKVQVVSI 290 (362)
T ss_dssp TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC---GGGTT-----SEEEEEEECHHHHHHHTTTCCG
T ss_pred HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc---hhhCC-----CCEEEEEEChhhhhhhccccch
Confidence 3456788999999999986421 122233333221110 01112 389999999998621
Q ss_pred ----------CCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhh
Q 015085 256 ----------SLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 256 ----------~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
....+....|+...+..... .....++.+||+++.|++.+++.+.+
T Consensus 291 ~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 291 KDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp GGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 13445666666544332211 11235788999999999998887754
No 419
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.65 E-value=0.00067 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~ 334 (413)
.+.++|+||+|||||+++|+|++.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 455599999999999999999998887
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0022 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36888999999999999999963
No 421
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.63 E-value=0.001 Score=58.09 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
..+-..++|+||+|||||+++|.+.+.+..|
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 4454556999999999999999987765544
No 422
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.62 E-value=0.00021 Score=67.29 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=53.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|+|++|+|+.++. .. ..+.... ...+ ..|+++|+||+|+............+ .+..
T Consensus 79 ~~~~d~vi~v~D~~~~~----~~-~~~~~~~-------~~~~----~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~l 138 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM----RN-LFLTLEL-------FEME----VKNIILVLNKFDLLKKKGAKIDIKKM----RKEL 138 (271)
T ss_dssp TTCCSEEEEEEEGGGHH----HH-HHHHHHH-------HHTT----CCSEEEEEECHHHHHHHTCCCCHHHH----HHHH
T ss_pred ccCCcEEEEEecCCcch----hh-HHHHHHH-------HhcC----CCCEEEEEEChhcCcccccHHHHHHH----HHHc
Confidence 36799999999998742 11 1111111 0112 03899999999986431111112222 2233
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
| ..++.+||+++.|++++++.+.....
T Consensus 139 g----~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 139 G----VPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp S----SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred C----CcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4 36899999999999999998866543
No 423
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.60 E-value=0.0028 Score=55.93 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-++.++|..|||||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368889999999999999998643
No 424
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.59 E-value=0.00079 Score=60.35 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCcE-EEEcCCCCcHHHHHHHHHccCc
Q 015085 306 RGNV-WAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 306 ~g~~-~~vG~ng~GKSTLin~L~g~~~ 331 (413)
++.+ .++|+||||||||+++|.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3454 4499999999999999998764
No 425
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.59 E-value=0.0013 Score=66.42 Aligned_cols=68 Identities=26% Similarity=0.223 Sum_probs=40.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc-------------------cccccccccCCCCCeeeeEeecccc-c
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-------------------NIVSHLTEAPVPGTTLGIVRVEGVL-P 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-------------------~~v~~~t~s~~pgtT~~~i~~~~~l-~ 367 (413)
++.++|..|+|||||++.|++.. |.+.... ...........+|+|++.....+.. .
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~~----~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYLT----GMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc----CCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 57789999999999999997543 2211100 0011122223478888764433222 2
Q ss_pred cccccccccccc
Q 015085 368 AQAKLFDTPGLL 379 (413)
Q Consensus 368 ~~~~liDtpGl~ 379 (413)
....++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 357899999964
No 426
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.58 E-value=0.00057 Score=67.24 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
++-+.++|+||+|||||+++|++.+.+..|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~ 152 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCC
Confidence 344555999999999999999998877643
No 427
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0012 Score=59.39 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
+|.+++ +|+||||||||++.|++.+++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456555 999999999999999988754
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.58 E-value=0.0019 Score=55.70 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678899999999999999986
No 429
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.58 E-value=0.0022 Score=55.86 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 430
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.56 E-value=0.00066 Score=67.14 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccCCc-EEEEcCCCCcHHHHHHHHHccCcCC-CCCC
Q 015085 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG-RGGD 337 (413)
Q Consensus 304 ~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~-~G~~ 337 (413)
...|. +.++|+||+|||||+++|++.+.+. +|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 34455 4559999999999999999998776 6654
No 431
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.54 E-value=0.00069 Score=62.58 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHH---ccCcCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGGD 337 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~---g~~~~~~G~~ 337 (413)
.+.++|+||||||||+++|+ |...++.|.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 35569999999999999999 8887766653
No 432
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.53 E-value=0.0015 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCc
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~ 331 (413)
+|.++ ++|++|||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35554 499999999999999998764
No 433
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.52 E-value=0.00077 Score=70.79 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCC--------------CCCcc-cccccccccccCCCCCeeeeEeeccccc-cccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGR--------------GGDGE-EKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAK 371 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~--------------G~~~~-~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~ 371 (413)
++.++|..|+|||||++.|++...... |.... .............+|+|++.....+... ....
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~ 258 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYE 258 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEE
Confidence 477799999999999999975321000 00000 0000111112235788887654433222 3567
Q ss_pred cccccccc
Q 015085 372 LFDTPGLL 379 (413)
Q Consensus 372 liDtpGl~ 379 (413)
++||||..
T Consensus 259 iiDTPGh~ 266 (592)
T 3mca_A 259 IGDAPGHR 266 (592)
T ss_dssp CCEEESSS
T ss_pred EEECCChH
Confidence 99999964
No 434
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.52 E-value=0.00039 Score=60.88 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.++++|+||+|||||+++|++...+..|
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4566999999999999999988755555
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0045 Score=55.30 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHhhhcCCCcEEEEEEeCC-CCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 188 RKLMSASGARSVVLMVVDAA-DFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~-d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
..+......++.+++|+|+. +. .++ ..+.+++.............+ .|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDP-KKL-TTTAEFLVDILSITESSCENG-----IDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCT-TCC-HHHHHHHHHHHHHHHHHSTTC-----CCEEEEEECTTSTTC
T ss_pred HHHHhccccCCEEEEEEECCCCh-HHH-HHHHHHHHHHHhcccccccCC-----CCEEEEEEchHhccc
Confidence 33333334579999999998 43 232 223333322111000000112 389999999999765
No 436
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.50 E-value=0.00054 Score=60.60 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=4.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999854
No 437
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.48 E-value=0.0011 Score=67.93 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=37.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-------------------ccccccccccCCCCCeeeeEeecccc-c
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-------------------KNIVSHLTEAPVPGTTLGIVRVEGVL-P 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-------------------~~~v~~~t~s~~pgtT~~~i~~~~~l-~ 367 (413)
++.++|..|+|||||++.|++.. |.+... .......+....+|+|.+.....+.. .
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~~----~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYDL----NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHHT----TSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----CCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 57789999999999999998653 211100 00112233344567777553332222 2
Q ss_pred cccccccccccc
Q 015085 368 AQAKLFDTPGLL 379 (413)
Q Consensus 368 ~~~~liDtpGl~ 379 (413)
....++||||..
T Consensus 111 ~~~~iiDTPG~~ 122 (483)
T 3p26_A 111 ANFTIVDAPGHR 122 (483)
T ss_dssp CEEEEECCCCCG
T ss_pred ceEEEEECCCcH
Confidence 256799999974
No 438
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.48 E-value=0.00019 Score=63.66 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|++
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678899999999999999884
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.48 E-value=0.0016 Score=57.54 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4678899999999999999974
No 440
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.48 E-value=0.0008 Score=60.24 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
..+.+++ +|++|+|||||++.|.+.+.+..|.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~ 52 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS 52 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence 3455444 9999999999999999876544443
No 441
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.47 E-value=0.0003 Score=70.82 Aligned_cols=58 Identities=31% Similarity=0.340 Sum_probs=33.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc--ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP--AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~--~~~~liDtpGl~~ 380 (413)
++.++|..|+|||||+|.|++.. ...++..+|+|.+.......+. ....++||||...
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 67889999999999999998532 1123455677766543322222 2568999999864
No 442
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.43 E-value=0.00045 Score=70.97 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=54.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH---
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ--- 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~--- 268 (413)
..+..+|++++|+|+.+..+....+....+.. .+. |+++|+||+|+..... +.+...+..
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~----------~~v-----PiIVviNKiDl~~~~~--~~v~~~l~~~~~ 132 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA----------AQV-----PVVVAVNKIDKPEADP--DRVKNELSQYGI 132 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH----------TTC-----CEEEEEECSSSSTTCC--CCTTCCCCCCCC
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh----------cCc-----eEEEEEEeccccccCH--HHHHHHHHHhhh
Confidence 34667899999999987544333333332221 133 8999999999964311 111100000
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..+.++ ....++.+||++|.|+++|++.|..
T Consensus 133 ~~~~~~--~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 133 LPEEWG--GESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CTTCCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred hHHHhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence 000111 1236899999999999999988753
No 443
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.42 E-value=0.0039 Score=66.98 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEeEEEeecCcchhccchhhhc-----------ccCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLA-----------GKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~-----------~~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+...++..+.|+++++..+.++. ..-..+.++|..|+|||||||+|+|..
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455666677666555443321 122378889999999999999999864
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.41 E-value=0.0029 Score=58.44 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+...+.. ++|++|+|+....... .+...+..... .....++ |+++|+||+|+.... ....+.+|++
T Consensus 130 ~~~~~~~~~-~~iv~vvD~~~~~~~~--~~~~~~~~~~~---~~~~~~~-----p~~iv~NK~D~~~~~-~~~~~~~~l~ 197 (262)
T 1yrb_A 130 VRLMENLPY-PLVVYISDPEILKKPN--DYCFVRFFALL---IDLRLGA-----TTIPALNKVDLLSEE-EKERHRKYFE 197 (262)
T ss_dssp HHHHHTSSS-CEEEEEECGGGCCSHH--HHHHHHHHHHH---HHHHHTS-----CEEEEECCGGGCCHH-HHHHHHHHHH
T ss_pred HHHHHHHhh-ceEEeccchhhhcCHH--HHHHHHHHHHH---HhcccCC-----CeEEEEecccccccc-cHHHHHHHHh
Confidence 334455566 9999999987654321 11111100000 0011122 899999999997431 0112233321
Q ss_pred H------H------------------HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 Q------R------------------AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~------~------------------~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. . ++..+ ....++.+||+++.|+++|++.|.+...
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 198 DIDYLTARLKLDPSMQGLMAYKMCSMMTEVL--PPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS--CCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccccchhHhHHHHHHHHhc--CcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 0 12222 1126789999999999999998865543
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.39 E-value=0.003 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999964
No 446
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.39 E-value=0.00093 Score=65.63 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=63.4
Q ss_pred hhhcCCCcEEEEEEeCCCCCC--------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------
Q 015085 191 MSASGARSVVLMVVDAADFDG--------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------- 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~--------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------- 255 (413)
....+.++.||+|+|+++++. ........++...... .+-.+ .|++||+||+||...
T Consensus 211 ~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~---~~~~~-----~piiLv~NK~DL~~~ki~~~~l 282 (353)
T 1cip_A 211 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWFTD-----TSIILFLNKKDLFEEKIKKSPL 282 (353)
T ss_dssp GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC---GGGTT-----SEEEEEEECHHHHHHHHTTSCG
T ss_pred HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC---ccccC-----CcEEEEEECcCchhhhccccch
Confidence 356678999999999998642 1122333333322110 01112 389999999998521
Q ss_pred ---------CCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhhh
Q 015085 256 ---------SLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 256 ---------~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
....+....|+...+..... .....++.+||+++.|+.++++.+.+.
T Consensus 283 ~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 283 TICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp GGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 12445667776654433210 012357889999999999998887543
No 447
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.37 E-value=0.00065 Score=62.57 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+.++|+||+|||||+++|++.+.+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 345899999999999999999999988754
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.37 E-value=0.0054 Score=54.39 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
....+.+++|+|+.+........+.+++... +. ++++|.||+|++.... .......++..+...
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------~~-----~~~~v~nK~D~~s~~~-~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS----------NI-----AVLVLLTKADKLASGA-RKAQLNMVREAVLAF 169 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TC-----CEEEEEECGGGSCHHH-HHHHHHHHHHHHGGG
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHc----------CC-----CeEEEEecccCCCchh-HHHHHHHHHHHHHhc
Confidence 3567889999999875432233344444321 22 7899999999975310 001012222333333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+ ....++.+||+++.|++++++.|.++.
T Consensus 170 ~--~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 N--GDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp C--SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred C--CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 2 123578899999999999999886654
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.35 E-value=0.003 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|||||||+|.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999998654
No 450
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.00078 Score=70.97 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-++.++|..|+|||||+|.|++..
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHhc
Confidence 368889999999999999999653
No 451
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.32 E-value=0.0036 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36888999999999999999853
No 452
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.31 E-value=0.0013 Score=62.46 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=30.5
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCC
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
++.+ .....+|++++ +|+||+|||||++.|++...+..|
T Consensus 25 Ld~i-~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 25 INDK-TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp HHHH-HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHH-hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 4444 24456677766 999999999999999998877766
No 453
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.30 E-value=0.0017 Score=57.18 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 015085 309 VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g 328 (413)
++++|+||||||||++.|++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 34599999999999999987
No 454
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.28 E-value=0.0086 Score=61.91 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=33.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
...+..+|.+|+|+|+.+........+.+.+.. .+ .|+++|+||+|+...
T Consensus 100 ~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~----------~~-----ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 100 YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL----------RD-----TPILTFMNKLDRDIR 149 (529)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT----------TT-----CCEEEEEECTTSCCS
T ss_pred HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH----------cC-----CCEEEEEcCcCCccc
Confidence 345677999999999988643323333333221 12 389999999999754
No 455
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.26 E-value=0.0027 Score=64.20 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
|.++|+.++|||||||.|+|.
T Consensus 70 VsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhh
Confidence 444999999999999999986
No 456
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0021 Score=62.01 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccC--------cCCCCCCc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV--------DAGRGGDG 338 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~--------~~~~G~~~ 338 (413)
+.++|.+|||||||||.|++.. .++.|.+.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~ 44 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS 44 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC
Confidence 3449999999999999999986 56777654
No 457
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.24 E-value=0.0018 Score=61.10 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=26.6
Q ss_pred hccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 295 LIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+++.+ .+...+| +.++|+||+|||||+++|++...
T Consensus 35 ~l~~~-~l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKAL-GLVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHT-TCCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHc-CCCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 44444 4444555 77799999999999999998764
No 458
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.22 E-value=0.0019 Score=66.88 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--ccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~ 379 (413)
..+.++|..|+|||||++.|.+.. ......+|+|.+.......+ .....++||||..
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~----------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQ----------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHH----------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 467889999999999999998532 11123455555443222222 2246789999964
No 459
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.22 E-value=0.0076 Score=64.35 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=31.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
..+..+|.+|+|+|+.+........+.+.+.. .+. |+++|+||+|+...
T Consensus 96 ~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----------~~~-----p~ivviNKiD~~~~ 144 (691)
T 1dar_A 96 RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----------YKV-----PRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CEEEEEECTTSTTC
T ss_pred HHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----------cCC-----CEEEEEECCCcccC
Confidence 34455899999999987654322223222221 133 89999999999754
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.21 E-value=0.0015 Score=67.39 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=33.3
Q ss_pred hhccchhhh-cccCCcEEE-EcCCCCcHHHHHHH--HHccCcCCCCCCc
Q 015085 294 SLIDDVVDL-AGKRGNVWA-IGAQNAGKSTLLNA--IAKSVDAGRGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l-~~~~g~~~~-vG~ng~GKSTLin~--L~g~~~~~~G~~~ 338 (413)
..++.+ .+ ...+|++++ +|+||+|||||+++ +.|+.++++|.+.
T Consensus 26 ~~Ld~i-~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~ 73 (525)
T 1tf7_A 26 EGFDDI-SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 73 (525)
T ss_dssp TTHHHH-TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred hhHHHh-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 345555 45 456777776 99999999999999 6798887777543
No 461
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.0016 Score=58.59 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=51.4
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHcCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~g~ 275 (413)
++.+++|+|+..... ....+.... + .++++|+||+|+... ......+.++++. .+
T Consensus 130 ~~~~i~vvd~~~~~~----~~~~~~~~~----------~-----~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~- 185 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD----VVEKHPEIF----------R-----VADLIVINKVALAEAVGADVEKMKADAKL----IN- 185 (221)
T ss_dssp CSEEEEEEEGGGCTT----HHHHCHHHH----------H-----TCSEEEEECGGGHHHHTCCHHHHHHHHHH----HC-
T ss_pred cCcEEEEEeCCCcch----hhhhhhhhh----------h-----cCCEEEEecccCCcchhhHHHHHHHHHHH----hC-
Confidence 577899999987532 111111110 1 278999999998642 1233444444432 22
Q ss_pred CccceEEEeEEEeecCcchhccchhhhc
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
....++.+||+++.|++++++.|.+..
T Consensus 186 -~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 186 -PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp -TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 124689999999999999998886543
No 462
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.20 E-value=0.0019 Score=57.62 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCcE-EEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNV-WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~-~~vG~ng~GKSTLin~L~g~~ 330 (413)
.|.+ +++|+||||||||+++|.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3454 459999999999999998765
No 463
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.19 E-value=0.0016 Score=63.72 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCcEEEEEEeCCCCCCCchH-HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~-~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
..+++|++|+|+.......+. .+.+.+.. .+ .++++|+||+|++..... ...+++......
T Consensus 166 ~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~----------~~-----~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l 227 (353)
T 2x2e_A 166 KENCLILAVSPANSDLANSDALKVAKEVDP----------QG-----QRTIGVITKLDLMDEGTD---ARDVLENKLLPL 227 (353)
T ss_dssp STTEEEEEEEETTSCGGGCHHHHHHHHHCT----------TC-----TTEEEEEECGGGSCTTCC---CHHHHTTCSSCC
T ss_pred CCCeEEEEEecCCCccchhHHHHHHHHhCc----------CC-----CceEEEeccccccCcchh---HHHHHhCCcccc
Confidence 456788888888642221111 23332221 12 389999999999865321 122221100000
Q ss_pred CCCccceEEEeEEEeecCcchhccchhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
. .++..++.+||+++.|++++++.+..
T Consensus 228 ~-~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 228 R-RGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp T-TCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred c-CCceEEEeCCcccccccccHHHHHHH
Confidence 0 12335778999999999999888754
No 464
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.19 E-value=0.004 Score=63.63 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=34.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
++.++|.+|||||||||.|++... ....+..+++...+.+ -.-...++||+|..
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~~---------------~~~~~T~~~~~~~~~~---~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQS---------------VTTIPTVGFNVETVTY---KNVKFNVWDVGGQD 377 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC---------------CCCCCCSSEEEEEEES---SSCEEEEEEECCCG
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC---------------CCcCCccceeEEEEEe---CCEEEEEEECCCcH
Confidence 577799999999999999986331 1111223344443332 12246789999964
No 465
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.18 E-value=0.0029 Score=63.12 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=33.9
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhcc-chhhhc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLID-DVVDLA 303 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~-~I~~l~ 303 (413)
|+++|+||+|+. . ...+..+.+ .....+ ..++.+||+.+.++.+|++ .+.++.
T Consensus 216 P~i~v~NK~D~~-~---~~~l~~l~~-~~~~~~----~~vv~iSA~~e~~l~~L~~~~l~~~~ 269 (397)
T 1wxq_A 216 PMVIAANKADAA-S---DEQIKRLVR-EEEKRG----YIVIPTSAAAELTLRKAAKAGFIEYI 269 (397)
T ss_dssp CEEEEEECGGGS-C---HHHHHHHHH-HHHHTT----CEEEEECHHHHHHHHSCSSSCCCCSC
T ss_pred CEEEEEeCcccc-c---hHHHHHHHH-HHhhcC----CcEEEEeccchhhHHHHHhhhhhhhc
Confidence 999999999986 2 222333222 111112 3689999999999988766 443333
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0037 Score=56.57 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999863
No 467
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.17 E-value=0.016 Score=61.97 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=31.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+..+|.+|+|+|+.+........+.+.+.. .+. |+++|+||+|+...
T Consensus 95 ~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~----------~~~-----p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATT----------YGV-----PRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHHH----------TTC-----CEEEEEECTTSTTC
T ss_pred HHHHCCEEEEEECCCCCCcHHHHHHHHHHHH----------cCC-----CEEEEEECCCcccc
Confidence 4455899999999987544333333333221 132 89999999999764
No 468
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.16 E-value=0.0018 Score=57.78 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=25.3
Q ss_pred hcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 302 LAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 302 l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
+...+|.++ ++|++|+|||||.++|.+.+. ..|.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 334455654 499999999999999998775 3453
No 469
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.16 E-value=0.0038 Score=59.55 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|.+|+|||||++.+.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHHh
Confidence 3678899999999999999985
No 470
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.15 E-value=0.0014 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++++|++|+|||||+++|++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34666999999999999999987754
No 471
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.15 E-value=0.0088 Score=52.70 Aligned_cols=89 Identities=22% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHcC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~g 274 (413)
.++.+++|+|..+.. ++ ..+..++... ...... ...|+++|.||+|+... .........| ....+
T Consensus 80 ~~~~~i~v~dv~~~~-s~-~~~~~~~~~l-----~~~~~~---~~~piilV~NK~Dl~~~r~v~~~~~~~~----a~~~~ 145 (192)
T 2cjw_A 80 VGDAYLIVYSITDRA-SF-EKASELRIQL-----RRARQT---EDIPIILVGNKSDLVRXREVSVSEGRAX----AVVFD 145 (192)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHTTT---SCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred cCCEEEEEEECCCHH-HH-HHHHHHHHHH-----HHhhCC---CCCeEEEEEechhhhccccccHHHHHHH----HHHhC
Confidence 368899999988642 22 2222222111 001000 11389999999998643 2222222222 22232
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||++|.|++++++.+.+.
T Consensus 146 ----~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 146 ----XKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp ----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----CceEEeccccCCCHHHHHHHHHHH
Confidence 357889999999999999887543
No 472
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.14 E-value=0.0032 Score=67.31 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHH-HHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CCh---HHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRK-VAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSP---TRF 262 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~-l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~---~~l 262 (413)
+.+...+..+|+||+|+|+.+.....+.. +.+.+.. .+ .|+++|+||+|+.... ... +.+
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----------~~-----~~iiiVlNK~Dl~~~~~~~~ee~e~l 256 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----------RG-----LTVFFLVNAWDQVRESLIDPDDVEEL 256 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----------SC-----CCEEEEEECGGGGGGGCSSTTCHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----------hC-----CCEEEEEECcccccccccChhhHHHH
Confidence 44556677899999999997653322221 1122221 12 2799999999997542 111 111
Q ss_pred -------HHHHHHHHHHc-C---C-CccceEEEeEEE--------------eecCcchhccchhhhc
Q 015085 263 -------EHWVRQRARED-G---I-SKITKLHFVSAV--------------KNWGLKSLIDDVVDLA 303 (413)
Q Consensus 263 -------~~~~~~~~~~~-g---~-~~~~~V~~vSa~--------------~~~Gi~~Ll~~I~~l~ 303 (413)
...+...+... + . .....++.+||+ ++.|+++|.+.+.+..
T Consensus 257 ~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 257 QASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 11111112111 1 0 012368999999 8899999988886544
No 473
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.11 E-value=0.011 Score=63.23 Aligned_cols=49 Identities=14% Similarity=0.016 Sum_probs=31.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.++..+|.+|+|+|+.+........+.+.+.. .+ .|+++|+||+|+...
T Consensus 101 ~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----------~~-----ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 101 RSMRVLDGAVMVYCAVGGVQPQSETVWRQANK----------YK-----VPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH----------cC-----CCEEEEEeCCCcccc
Confidence 34556899999999997643322233222211 13 289999999998754
No 474
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.09 E-value=0.0027 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++|||||||.+.|.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46779999999999999999865
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0008 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAG 333 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~ 333 (413)
.+.++|++|+|||||++.|++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 35669999999999999999998776
No 476
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.05 E-value=0.0021 Score=62.71 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH---HHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR---QRA 270 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~---~~~ 270 (413)
...+|++++|+|+..... . +.+.... .+. |.++|+||+|+... ..+..++. ..+
T Consensus 167 ~~~aD~vl~Vvd~~~~~~--~----~~l~~~~--------~~~-----p~ivv~NK~Dl~~~----~~~~~~~~~l~~~l 223 (341)
T 2p67_A 167 ARMVDCFISLQIAGGGDD--L----QGIKKGL--------MEV-----ADLIVINKDDGDNH----TNVAIARHMYESAL 223 (341)
T ss_dssp HTTCSEEEEEECC------------CCCCHHH--------HHH-----CSEEEECCCCTTCH----HHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEEeCCccHH--H----HHHHHhh--------hcc-----cCEEEEECCCCCCh----HHHHHHHHHHHHHH
Confidence 467999999999865321 0 0111000 011 78999999999642 22322222 222
Q ss_pred HHcCCC-c--cceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGIS-K--ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~-~--~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...+.. . ...++.+||+++.|+++|++.|.+..
T Consensus 224 ~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 224 HILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222210 0 24688999999999999999886543
No 477
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.03 E-value=0.0089 Score=62.09 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=38.0
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+|...+. +++.-+|-+|+|||+.+.....-..+.+...+. +. |.++++||+|....
T Consensus 111 vDF~~Ev~----raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----------~l-----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFSEDTY----RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----------AT-----PVMTFVNKMDREAL 167 (548)
T ss_dssp GGCSHHHH----HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----------TC-----CEEEEEECTTSCCC
T ss_pred HHHHHHHH----HHHHhcCceEEEeecCCCcccccHHHHHHHHHh----------CC-----ceEEEEecccchhc
Confidence 44554333 344568999999999987665444454444332 33 89999999998644
No 478
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.96 E-value=0.0076 Score=59.18 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=22.2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHH---HHHHHHcCCCccceEEEeEEEeecCcchhcc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWV---RQRAREDGISKITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~---~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
|+|+|+||+|++.. ..+..+. ...++..+ ..++.+||+.+.+ ++.+.
T Consensus 176 piIlV~NK~Dl~~~----~ev~~~k~~i~~~~~~~~----i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 176 NIVPVIAKADTLTL----KERERLKKRILDEIEEHN----IKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp CEEEEEECCSSSCH----HHHHHHHHHHHHHTTCC-----CCSCCCC----------CH
T ss_pred CEEEEEECCCCCCH----HHHHHHHHHHHHHHHHCC----CCEEeCCCcCCCc-chhHH
Confidence 89999999999743 3333322 22222222 3577899999887 44433
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.91 E-value=0.021 Score=54.57 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=52.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH---HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH----HHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV---AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT----RFEH 264 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l---~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~----~l~~ 264 (413)
..+..+|++++|+|+.+... ...+ .+++... .....+ .|+++|+||+|+..... .. ....
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s--~~~l~~~~~~l~~l-----~~~~~~-----~piilv~NK~Dl~~~~~-r~~~~~v~~~ 142 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEV--LKDIEIFAKALKQL-----RKYSPD-----AKIFVLLHKMDLVQLDK-REELFQIMMK 142 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCH--HHHHHHHHHHHHHH-----HHHCTT-----CEEEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred HHhccCCEEEEEEECCChhh--HHHHHHHHHHHHHH-----HHhCCC-----CeEEEEEecccccchhh-hhHHHHHHHH
Confidence 44568999999999988532 2222 2223221 011112 39999999999975210 11 1112
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
...++.+..|.. ...++.+||++ .++.+++..+.
T Consensus 143 ~~~~~~~~~g~~-~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 143 NLSETSSEFGFP-NLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHHHTTTCC-SCEEEECCTTS-SHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CeEEEEeeecC-ChHHHHHHHHH
Confidence 333444444421 14688999988 66666555543
No 480
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.89 E-value=0.0013 Score=58.35 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 677899999999999999984
No 481
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.89 E-value=0.019 Score=57.54 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=54.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
+.++.++.+++|+|+. . .....+..+.... ......+. . .|.++|+||+|+... ..+..+. ..++
T Consensus 231 ~~~era~~lL~vvDls--~-~~~~~ls~g~~el-~~la~aL~-~-----~P~ILVlNKlDl~~~----~~~~~l~-~~l~ 295 (416)
T 1udx_A 231 RHIARTRVLLYVLDAA--D-EPLKTLETLRKEV-GAYDPALL-R-----RPSLVALNKVDLLEE----EAVKALA-DALA 295 (416)
T ss_dssp HHHTSSSEEEEEEETT--S-CHHHHHHHHHHHH-HHHCHHHH-H-----SCEEEEEECCTTSCH----HHHHHHH-HHHH
T ss_pred HHHHHHHhhhEEeCCc--c-CCHHHHHHHHHHH-HHHhHHhh-c-----CCEEEEEECCChhhH----HHHHHHH-HHHH
Confidence 3456789999999997 1 1122222211110 00000011 2 289999999998632 2233332 2333
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|+++|++.|.+.+.
T Consensus 296 ~~g----~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 REG----LAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TTT----SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcC----CeEEEEECCCccCHHHHHHHHHHHHH
Confidence 333 36899999999999999998866543
No 482
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=95.85 E-value=0.0039 Score=63.74 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=30.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
.+.++|..|+|||||++.|++.... ..+........+|+|.+.....+... ....++||||..
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~~~---------~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred EEEEECCCCChHHHHHHHHHCCCcc---------cccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 5778999999999999999864310 00111223344666665422111122 256899999963
No 483
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.83 E-value=0.0054 Score=55.74 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 688899999999999999874
No 484
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.80 E-value=0.0026 Score=59.12 Aligned_cols=31 Identities=29% Similarity=0.182 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH---ccCcCCCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~---g~~~~~~G~~~ 338 (413)
.+.++|++||||||++++|+ |...+++|.+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 35669999999999999999 87777766543
No 485
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.79 E-value=0.003 Score=62.82 Aligned_cols=71 Identities=30% Similarity=0.336 Sum_probs=38.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||++.|++.... .|..... .......+.....|+|.+.....+.. .....++||||..
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAE-GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhh-cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 5777999999999999999964211 1210000 00011111222456776643322222 2356799999974
No 486
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.75 E-value=0.0056 Score=58.93 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=48.2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc------------cCCcE
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG------------KRGNV 309 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~------------~~g~~ 309 (413)
...+|++|.|..++ .+. +.+++.+ ..|+.++..+...+..|...+..... .+..+
T Consensus 81 ~P~IIltrg~~~pe-----eli----e~A~~~~----IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~v 147 (314)
T 1ko7_A 81 TPAIIVTRDLEPPE-----ELI----EAAKEHE----TPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGV 147 (314)
T ss_dssp CCCEEECTTCCCCH-----HHH----HHHHHTT----CCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEE
T ss_pred CCEEEEeCCCCCCH-----HHH----HHHHHCC----CeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEE
Confidence 45788899998642 222 2334444 35777777777666666665543211 12346
Q ss_pred EEEcCCCCcHHHHHHHHHc
Q 015085 310 WAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g 328 (413)
.++|++|+||||+...|.+
T Consensus 148 l~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHh
Confidence 6699999999999999986
No 487
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.029 Score=48.69 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHhhhcCCCcEEEEEEeCC-CCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAA-DFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~-d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.+...+..+|.+++|+|+. +. .+ ...+..++.............+ .|+++|+||+|+.... ....+.+.+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~~-~~~~~~~~l~ 182 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDP-KK-LTTTAEFLVDILSITESSCENG-----IDILIACNKSELFTAR-PPSKIKDALE 182 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCH-HH-HHHHHHHHHHHHHHHHHHSTTC-----CCEEEEEECTTSTTCC-CHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCCc-hh-HHHHHHHHHHHHhhhhhccccC-----CCEEEEEEchHhcCCC-CHHHHHHHHH
Confidence 3344445689999999998 32 11 1223333322111000000012 3899999999998653 2344444443
No 488
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.71 E-value=0.0019 Score=62.59 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=24.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC----cCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV----DAGRGGD 337 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~----~~~~G~~ 337 (413)
.+.++|+||+|||||+++|++.+ .+.+|.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 46679999999999999999887 4445543
No 489
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.68 E-value=0.0062 Score=62.47 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
..+.++|..|+|||||++.|.+
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~ 26 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRS 26 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4678899999999999999985
No 490
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.68 E-value=0.0043 Score=57.25 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=23.4
Q ss_pred hcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 302 l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+...+| ++++|++|+|||||+++|++...
T Consensus 46 ~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 46 ARIPKG-VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCCSE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCe-EEEECCCCCCHHHHHHHHHHHhC
Confidence 333444 77899999999999999998763
No 491
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.62 E-value=0.0063 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.8
Q ss_pred Cc-EEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GN-VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~-~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+. ++++|++||||||+.+.|.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 44 4559999999999999998754
No 492
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.59 E-value=0.0072 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|+|||||++.|+|..
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 56779999999999999999653
No 493
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.56 E-value=0.0049 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.7
Q ss_pred cCCcEE-EEcCCCCcHHHHHHHHHcc
Q 015085 305 KRGNVW-AIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 305 ~~g~~~-~vG~ng~GKSTLin~L~g~ 329 (413)
.+|.++ ++|++|||||||+++|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345544 4999999999999999987
No 494
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.54 E-value=0.0051 Score=59.66 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=62.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCC--------chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC------
Q 015085 190 LMSASGARSVVLMVVDAADFDGS--------FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------ 255 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s--------~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------ 255 (413)
.....+.++.|++|+|.++++.. ...+..+++..... ..+-.+ .|+++|+||+||...
T Consensus 184 w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~---~~~~~~-----~~iiL~~NK~DL~~~ki~~~~ 255 (327)
T 3ohm_A 184 WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQN-----SSVILFLNKKDLLEEKIMYSH 255 (327)
T ss_dssp GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT---SGGGTT-----CEEEEEEECHHHHHHHTTTSC
T ss_pred HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh---hhccCC-----ceEEEEEECchhhhhhhccch
Confidence 33567789999999988743321 11222333322110 011112 389999999998642
Q ss_pred -----------CCChHHHHHHHHHHHHHcCCC--ccceEEEeEEEeecCcchhccchhhhc
Q 015085 256 -----------SLSPTRFEHWVRQRAREDGIS--KITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 256 -----------~~~~~~l~~~~~~~~~~~g~~--~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
....+....|+...+...... .....+.+||+.+.+++.+++.+.+..
T Consensus 256 l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 256 LVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp GGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 124456667766554432110 112467899999999999988886543
No 495
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.52 E-value=0.0034 Score=63.21 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||++.|++.
T Consensus 8 ~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 8 NLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5777999999999999999854
No 496
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.007 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++||+||||+||++.|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6779999999999999998654
No 497
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.49 E-value=0.0065 Score=53.57 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999863
No 498
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.49 E-value=0.0062 Score=64.74 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=0.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC--CCCCCcccccccccccccCCCCCeeeeEeecccccc-ccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPG 377 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpG 377 (413)
.+.++|.+|+|||||++.|++.... ..|.+................|.|............ ...++||||
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred EEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
No 499
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.48 E-value=0.023 Score=51.62 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=55.1
Q ss_pred CCcEEEEEEeCCCCCCCch-HHH---HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcc-cCCCCCCChHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFP-RKV---AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKI-DLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~-~~l---~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~-DLl~~~~~~~~l~~~~~~~~ 270 (413)
.+|.||||||++|-....- .++ .+++... . ...+. |++|..||. |+ +......++.+.+. +
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee---~---~L~ga-----pLLVlANKqqDl-p~Ams~~EI~e~L~--L 190 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPA---F---GSSGR-----PLLVLSCISQGD-VKRMPCFYLAHELH--L 190 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTT---S---SCSCS-----CEEEEEEESSTT-SCBCCHHHHHHHTT--G
T ss_pred CCCEEEEEeccccHhHHHHHHHHHHHHHHhcch---h---hhCCC-----eEEEEeCCCcCc-cCCCCHHHHHHHcC--C
Confidence 4799999999998643211 122 1222110 0 00132 899999996 66 44445455544332 1
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
... .+...|..+||.+|.|+.+-++++.+..
T Consensus 191 ~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 191 NLL--NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp GGG--CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCC--CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 111 2456799999999999999888875544
No 500
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.46 E-value=0.006 Score=59.61 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=47.6
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
.+.+|++++|+|+.+... ...+...+. . .+.++|+||+|+.+..........+.. .++..
T Consensus 185 ~~~~d~vl~V~d~~~~~~--~~~i~~~il------------~-----~~~ivVlNK~Dl~~~~~~~~~~~~l~~-~l~~~ 244 (349)
T 2www_A 185 ADMVDMFVLLLPPAGGDE--LQGIKRGII------------E-----MADLVAVTKSDGDLIVPARRIQAEYVS-ALKLL 244 (349)
T ss_dssp HTTCSEEEEEECCC--------------C------------C-----SCSEEEECCCSGGGHHHHHHHHHHHHH-HHTTC
T ss_pred HhhCCEEEEEEcCCcchh--HHHhHHHHH------------h-----cCCEEEEeeecCCCchhHHHHHHHHHH-HHHhc
Confidence 457899999999875321 111111010 1 267999999999632100001112211 11100
Q ss_pred CC---CccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GI---SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.. .....++.+||+++.|+++|++.|.++.
T Consensus 245 ~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 245 RKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp C-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 0013688899999999999999986654
Done!