Query 015086
Match_columns 413
No_of_seqs 341 out of 2033
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 3E-56 6.6E-61 464.7 29.2 318 2-341 36-371 (571)
2 PHA02713 hypothetical protein; 100.0 4.4E-50 9.6E-55 419.4 26.4 287 2-326 25-329 (557)
3 PHA02790 Kelch-like protein; P 100.0 2.4E-48 5.1E-53 400.5 28.1 303 2-338 22-350 (480)
4 PHA03098 kelch-like protein; P 100.0 2.6E-46 5.7E-51 391.2 27.4 304 2-326 9-367 (534)
5 KOG4350 Uncharacterized conser 100.0 9.1E-31 2E-35 249.2 11.6 207 2-224 44-254 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 3.8E-24 8.2E-29 208.8 13.8 211 2-223 114-340 (521)
7 KOG4682 Uncharacterized conser 99.8 2E-19 4.4E-24 172.1 11.6 174 2-183 69-247 (488)
8 PF07707 BACK: BTB And C-termi 99.8 3.6E-19 7.8E-24 145.1 4.4 103 107-218 1-103 (103)
9 PF00651 BTB: BTB/POZ domain; 99.7 4.2E-17 9.1E-22 134.5 8.3 95 2-99 10-109 (111)
10 smart00875 BACK BTB And C-term 99.7 1.7E-16 3.6E-21 128.4 9.2 99 107-215 1-99 (101)
11 smart00225 BTB Broad-Complex, 99.6 6.6E-16 1.4E-20 121.1 9.0 88 4-94 1-90 (90)
12 KOG4591 Uncharacterized conser 99.6 1.3E-15 2.8E-20 133.5 8.7 152 2-165 66-223 (280)
13 KOG0783 Uncharacterized conser 99.5 4.5E-14 9.8E-19 145.4 5.3 136 1-143 711-852 (1267)
14 KOG0511 Ankyrin repeat protein 98.1 3.5E-06 7.6E-11 81.3 6.2 134 10-150 301-441 (516)
15 KOG0783 Uncharacterized conser 98.1 3.9E-06 8.5E-11 87.9 6.9 93 2-94 558-682 (1267)
16 KOG4441 Proteins containing BT 98.1 3.1E-06 6.8E-11 89.3 6.1 78 262-342 381-467 (571)
17 KOG2716 Polymerase delta-inter 97.8 0.0001 2.3E-09 67.9 8.6 92 5-99 7-103 (230)
18 PF02214 BTB_2: BTB/POZ domain 97.6 5E-05 1.1E-09 60.6 3.9 86 5-93 1-94 (94)
19 PF11822 DUF3342: Domain of un 97.6 5.7E-05 1.2E-09 72.6 4.9 88 10-99 14-102 (317)
20 PHA02713 hypothetical protein; 97.6 0.00015 3.4E-09 76.6 7.7 72 262-339 352-452 (557)
21 KOG2838 Uncharacterized conser 97.5 9.1E-05 2E-09 68.8 4.2 83 4-86 134-218 (401)
22 PHA03098 kelch-like protein; P 97.5 0.00042 9.1E-09 72.9 9.7 61 262-326 343-415 (534)
23 PHA02790 Kelch-like protein; P 97.5 0.00026 5.7E-09 73.5 7.4 70 262-337 319-394 (480)
24 KOG2838 Uncharacterized conser 97.4 7.5E-05 1.6E-09 69.4 2.4 97 11-109 262-395 (401)
25 smart00612 Kelch Kelch domain. 97.1 0.00069 1.5E-08 45.9 4.0 31 270-300 14-47 (47)
26 KOG1987 Speckle-type POZ prote 97.1 0.0002 4.4E-09 69.5 1.7 125 11-143 111-240 (297)
27 KOG3473 RNA polymerase II tran 96.7 0.0046 1E-07 48.6 5.9 71 11-85 28-111 (112)
28 TIGR03547 muta_rot_YjhT mutatr 96.6 0.0035 7.6E-08 62.1 5.8 38 271-312 168-209 (346)
29 cd03772 MATH_HAUSP Herpesvirus 96.6 0.017 3.7E-07 49.3 9.3 111 299-412 16-133 (137)
30 TIGR03547 muta_rot_YjhT mutatr 96.5 0.0035 7.5E-08 62.1 5.0 38 272-313 291-331 (346)
31 cd03774 MATH_SPOP Speckle-type 96.4 0.017 3.6E-07 49.5 8.2 112 299-413 22-138 (139)
32 smart00512 Skp1 Found in Skp1 96.2 0.015 3.3E-07 47.2 6.5 78 5-86 4-104 (104)
33 cd00121 MATH MATH (meprin and 96.2 0.024 5.3E-07 46.4 7.7 108 298-410 14-126 (126)
34 PLN02153 epithiospecifier prot 96.0 0.011 2.4E-07 58.5 5.9 47 262-312 86-146 (341)
35 PF00917 MATH: MATH domain; I 96.0 0.017 3.7E-07 47.3 6.1 98 305-411 17-119 (119)
36 PRK14131 N-acetylneuraminic ac 95.9 0.0082 1.8E-07 60.3 4.5 38 272-313 313-353 (376)
37 TIGR03548 mutarot_permut cycli 95.9 0.014 3.1E-07 57.2 5.9 65 262-333 124-200 (323)
38 PRK14131 N-acetylneuraminic ac 95.9 0.014 2.9E-07 58.8 5.9 36 271-306 189-228 (376)
39 TIGR03548 mutarot_permut cycli 95.6 0.021 4.5E-07 56.0 5.9 61 262-326 73-148 (323)
40 cd03773 MATH_TRIM37 Tripartite 95.6 0.049 1.1E-06 45.9 7.5 105 299-409 21-129 (132)
41 PLN02153 epithiospecifier prot 95.6 0.023 4.9E-07 56.3 5.8 39 270-312 216-260 (341)
42 PF13964 Kelch_6: Kelch motif 95.2 0.022 4.9E-07 39.4 3.3 39 289-333 1-42 (50)
43 KOG1665 AFH1-interacting prote 95.2 0.049 1.1E-06 49.7 6.1 69 24-95 34-105 (302)
44 KOG2714 SETA binding protein S 95.1 0.075 1.6E-06 53.0 7.5 89 5-97 13-111 (465)
45 PLN02193 nitrile-specifier pro 95.0 0.044 9.6E-07 56.8 6.2 47 262-312 229-287 (470)
46 KOG1724 SCF ubiquitin ligase, 94.9 0.052 1.1E-06 47.7 5.3 86 11-100 16-126 (162)
47 KOG4693 Uncharacterized conser 94.8 0.039 8.5E-07 51.8 4.6 94 261-363 88-209 (392)
48 PF13964 Kelch_6: Kelch motif 94.4 0.053 1.2E-06 37.5 3.5 29 262-290 12-50 (50)
49 cd03775 MATH_Ubp21p Ubiquitin- 94.2 0.37 8E-06 40.9 9.0 105 299-409 14-133 (134)
50 PLN02193 nitrile-specifier pro 94.0 0.095 2.1E-06 54.3 5.9 40 270-313 342-387 (470)
51 KOG0379 Kelch repeat-containin 93.7 0.13 2.8E-06 53.5 6.2 51 270-320 189-245 (482)
52 PF13854 Kelch_5: Kelch motif 93.5 0.081 1.8E-06 35.3 2.9 24 286-313 1-24 (42)
53 PF01344 Kelch_1: Kelch motif; 93.5 0.21 4.4E-06 33.8 5.1 18 289-306 1-18 (47)
54 PF13415 Kelch_3: Galactose ox 93.0 0.12 2.7E-06 35.5 3.4 29 270-298 18-49 (49)
55 PF03931 Skp1_POZ: Skp1 family 92.8 0.59 1.3E-05 34.0 6.9 53 5-62 3-58 (62)
56 KOG0379 Kelch repeat-containin 92.1 0.25 5.4E-06 51.5 5.6 39 271-313 139-183 (482)
57 PF07646 Kelch_2: Kelch motif; 91.5 0.3 6.6E-06 33.5 3.8 20 289-312 1-20 (49)
58 KOG4693 Uncharacterized conser 90.1 0.51 1.1E-05 44.5 5.0 40 270-313 267-312 (392)
59 PF01344 Kelch_1: Kelch motif; 89.8 0.37 8E-06 32.5 2.9 26 262-287 12-44 (47)
60 PF01466 Skp1: Skp1 family, di 88.2 0.39 8.5E-06 36.8 2.4 43 72-114 14-58 (78)
61 COG5201 SKP1 SCF ubiquitin lig 87.8 1.5 3.2E-05 36.7 5.5 83 12-99 14-120 (158)
62 cd00270 MATH_TRAF_C Tumor Necr 87.5 3.1 6.6E-05 35.7 7.9 105 299-409 22-148 (149)
63 KOG1778 CREB binding protein/P 86.9 0.57 1.2E-05 45.7 3.2 130 11-148 37-167 (319)
64 KOG0511 Ankyrin repeat protein 86.3 0.31 6.7E-06 47.9 1.1 83 4-91 151-236 (516)
65 KOG2715 Uncharacterized conser 85.4 1.9 4.1E-05 37.8 5.3 92 5-99 23-120 (210)
66 smart00061 MATH meprin and TRA 85.4 3.8 8.1E-05 31.5 6.8 77 298-382 14-94 (95)
67 cd03776 MATH_TRAF6 Tumor Necro 83.9 2.1 4.6E-05 36.8 5.1 99 302-410 25-147 (147)
68 PLN02772 guanylate kinase 82.0 2.6 5.6E-05 42.5 5.5 45 262-306 35-93 (398)
69 KOG1230 Protein containing rep 80.3 3.4 7.3E-05 41.5 5.4 40 270-313 206-252 (521)
70 KOG4350 Uncharacterized conser 78.2 3.2 6.9E-05 41.5 4.5 69 23-99 93-175 (620)
71 PF07707 BACK: BTB And C-termi 77.2 9.2 0.0002 30.0 6.4 83 75-160 2-102 (103)
72 KOG4152 Host cell transcriptio 74.0 6 0.00013 40.8 5.3 65 269-342 292-366 (830)
73 KOG1230 Protein containing rep 73.7 4.1 8.9E-05 40.9 4.0 37 271-311 98-140 (521)
74 KOG4152 Host cell transcriptio 71.2 8.7 0.00019 39.6 5.7 67 263-333 217-301 (830)
75 PF07646 Kelch_2: Kelch motif; 67.8 9 0.0002 26.0 3.7 18 270-287 29-46 (49)
76 cd03777 MATH_TRAF3 Tumor Necro 67.7 34 0.00073 30.8 8.3 105 301-410 62-184 (186)
77 PF13418 Kelch_4: Galactose ox 67.6 4.9 0.00011 27.2 2.3 21 289-313 1-22 (49)
78 cd03771 MATH_Meprin Meprin fam 66.9 60 0.0013 28.7 9.6 26 384-409 137-166 (167)
79 PF11822 DUF3342: Domain of un 66.8 3.1 6.7E-05 40.5 1.5 55 101-159 71-125 (317)
80 PF13799 DUF4183: Domain of un 66.6 4.7 0.0001 31.3 2.2 31 381-411 18-61 (84)
81 KOG3840 Uncharaterized conserv 66.1 8.2 0.00018 37.1 4.1 76 11-87 106-185 (438)
82 cd03781 MATH_TRAF4 Tumor Necro 62.7 27 0.00059 30.2 6.6 56 299-354 22-84 (154)
83 cd03780 MATH_TRAF5 Tumor Necro 60.6 35 0.00076 29.5 6.8 54 301-354 24-84 (148)
84 COG3055 Uncharacterized protei 54.1 14 0.00031 36.5 3.5 39 270-312 112-155 (381)
85 PF11512 Atu4866: Agrobacteriu 51.8 14 0.00031 28.0 2.4 40 358-405 31-70 (78)
86 cd03779 MATH_TRAF1 Tumor Necro 49.1 90 0.002 26.9 7.5 105 302-409 25-146 (147)
87 KOG2723 Uncharacterized conser 45.9 57 0.0012 30.2 6.0 88 6-96 12-105 (221)
88 smart00875 BACK BTB And C-term 39.4 97 0.0021 23.7 5.8 24 76-99 3-26 (101)
89 TIGR02148 Fibro_Slime fibro-sl 38.9 25 0.00055 27.6 2.2 14 390-403 24-38 (90)
90 KOG3713 Voltage-gated K+ chann 37.2 61 0.0013 33.4 5.2 55 38-95 79-134 (477)
91 PF13739 DUF4163: Domain of un 27.5 74 0.0016 24.5 3.3 31 344-378 68-98 (101)
92 COG3002 Uncharacterized protei 26.2 20 0.00044 38.1 -0.3 60 345-412 760-823 (880)
93 PF07250 Glyoxal_oxid_N: Glyox 25.8 81 0.0018 29.7 3.7 41 269-313 89-138 (243)
94 PF06059 DUF930: Domain of Unk 22.8 59 0.0013 26.2 1.9 31 306-336 55-86 (101)
95 PF13570 PQQ_3: PQQ-like domai 21.1 1.1E+02 0.0023 19.5 2.6 23 281-304 3-26 (40)
96 PF00651 BTB: BTB/POZ domain; 21.1 1E+02 0.0023 24.0 3.1 32 102-137 78-110 (111)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3e-56 Score=464.66 Aligned_cols=318 Identities=22% Similarity=0.390 Sum_probs=290.9
Q ss_pred CCcEEEEe--eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHH
Q 015086 2 DCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLM 79 (413)
Q Consensus 2 ~~DV~l~v--~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~ 79 (413)
.|||+|.+ ++|+|||.||||+||||++||+++++|+.+++|+|. ++++.+++.+++|+|||++.|+. +||++||.
T Consensus 36 lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~ 112 (571)
T KOG4441|consen 36 LCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQELLE 112 (571)
T ss_pred CceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHHHH
Confidence 69999999 479999999999999999999999999999999999 89999999999999999999999 99999999
Q ss_pred HHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHhhc
Q 015086 80 AADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI 159 (413)
Q Consensus 80 aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~~l 159 (413)
+|++|||+++.+.|++||.+ +++++||+.+..+|+ .++|.+|.+.+..||.+||.++.+ ++||+.||.+++..+
T Consensus 113 aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~----~~~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~l 186 (571)
T KOG4441|consen 113 AASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAE----LHSCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELIGL 186 (571)
T ss_pred HHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHhh
Confidence 99999999999999999999 899999999999998 459999999999999999999999 999999999999999
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCCCCCCCHHHHHhhhccCCCC--chHHHHHHHHHHHH
Q 015086 160 LSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEALFF 237 (413)
Q Consensus 160 L~sd~L~v~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~~~~l~--~~~c~~ll~ea~~~ 237 (413)
|++|+|+|.+|++||+|+++|++|| .++|+.++ +.++++||||+|++.+|.+.+...+++ ++.|++++.+|++|
T Consensus 187 l~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~ 262 (571)
T KOG4441|consen 187 LSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKY 262 (571)
T ss_pred ccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 78899999 899999999999999999999998875 48999999999999
Q ss_pred hhcCcccccccccccccCCcc-cceeEEEEecC-------CceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeee
Q 015086 238 KAEAPHRQRTLAAEESVTLNR-RFVERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQA 306 (413)
Q Consensus 238 ~~~~~~~q~~~~~~~~~p~~r-~~~~~l~~~~~-------~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
|..| .+++.++.++++| | ...+.||+.|+ .+.||+|||.++.|.. ||.+|.++++++++|+||+
T Consensus 263 ~~~~-~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv-- 337 (571)
T KOG4441|consen 263 HLLP-QRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYV-- 337 (571)
T ss_pred hhCc-ccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEE--
Confidence 9985 4566689999999 7 45578887332 5689999999999999 9999999999999999999
Q ss_pred eEecCcc---ceeccccccCCCCCceeeeeEEeeeccC
Q 015086 307 FHLGGQG---FFLSAHCNMDQQSSFHCFGLFLGMQEKG 341 (413)
Q Consensus 307 f~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (413)
+||++ ..++...+||+..+- |--...|+..+
T Consensus 338 --~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R 371 (571)
T KOG4441|consen 338 --VGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKR 371 (571)
T ss_pred --EccccCCCcccceEEEecCCCCc--eeccCCccCcc
Confidence 77766 467888899988643 66555565544
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-50 Score=419.36 Aligned_cols=287 Identities=14% Similarity=0.198 Sum_probs=243.7
Q ss_pred CCcEEEEee---eEEcchHhhcccCHHHHHhhcCCCCCCC-cceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015086 2 DCSTVVRVK---TLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 77 (413)
Q Consensus 2 ~~DV~l~v~---~f~aHr~VLaa~S~yF~~mF~~~~~Es~-~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~l 77 (413)
.|||+|.|+ +|+|||+||||+|+||++||+++|+|+. +++|+|+ ++++++|+.+|+|+|||+ ++. +||++|
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~l 99 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDV 99 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHH
Confidence 699999984 6999999999999999999999999874 7899998 999999999999999998 556 899999
Q ss_pred HHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHh
Q 015086 78 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVE 157 (413)
Q Consensus 78 L~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~ 157 (413)
|.||++||++.|+++|++||.+ +++++||+.++.++.. +.+.+|.++|.+||++||.++.+ +++|++|+.++|.
T Consensus 100 l~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~----~~~~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~ 173 (557)
T PHA02713 100 LKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYE----MSHIPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILF 173 (557)
T ss_pred HHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHH
Confidence 9999999999999999999999 8999999999986653 46778999999999999999999 9999999999999
Q ss_pred hcccCCC-cCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCCCCCCCHHHHHhhhccCCCC--chHHHHHHHHH
Q 015086 158 AILSSDD-LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEA 234 (413)
Q Consensus 158 ~lL~sd~-L~v~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~~~~l~--~~~c~~ll~ea 234 (413)
++|++|+ |+|.+|++||+|+++|++|| .++|.+ + .+||++||||+|++.++. .+.++++. .+.|.+++.+|
T Consensus 174 ~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~~-~-~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 174 DIISTNDNVYLYREGYKVTILLKWLEYN---YITEEQ-L-LCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred HHhccccccCCCcHHHHHHHHHHHHhcC---HHHHHH-H-hhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 9999987 79999999999999999999 555554 6 699999999999999987 45555654 48899999998
Q ss_pred HHHhhcCcccccccccccccCCcccceeEEEEecC-----CceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeee
Q 015086 235 LFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRP-----VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQA 306 (413)
Q Consensus 235 ~~~~~~~~~~q~~~~~~~~~p~~r~~~~~l~~~~~-----~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~ 306 (413)
+.++ ++.| |. ..+++.++ ...+++|||.+++|.. ||.+|.++++++++|+||+
T Consensus 248 ~~~~-------------~~~~--r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYv-- 308 (557)
T PHA02713 248 KQNR-------------NIIP--RQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIII-- 308 (557)
T ss_pred hhhc-------------ccCC--cc--eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEE--
Confidence 6432 1223 33 34444321 2468999999999998 8889999999999999999
Q ss_pred eEecCcc---ceeccccccCCCC
Q 015086 307 FHLGGQG---FFLSAHCNMDQQS 326 (413)
Q Consensus 307 f~~gg~~---~~~~~~~~~~~~~ 326 (413)
+||.. ..+.....||+.+
T Consensus 309 --iGG~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 309 --AGGYNFNNPSLNKVYKINIEN 329 (557)
T ss_pred --EcCCCCCCCccceEEEEECCC
Confidence 66643 1233344677665
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=400.54 Aligned_cols=303 Identities=15% Similarity=0.187 Sum_probs=237.1
Q ss_pred CCcEEEEe-eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHH
Q 015086 2 DCSTVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMA 80 (413)
Q Consensus 2 ~~DV~l~v-~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~a 80 (413)
.|||++.+ ++|+|||+||||+|||||+||+++|+|+.+ +|++...++++++|+.||+|+|||++.|+. +||++||.|
T Consensus 22 ~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~a 99 (480)
T PHA02790 22 FKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRA 99 (480)
T ss_pred hceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHH
Confidence 69999999 579999999999999999999999999954 566642389999999999999999999999 999999999
Q ss_pred HhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCc--hhhhcCCHHHHhh
Q 015086 81 ADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ--DEVMALPLAGVEA 158 (413)
Q Consensus 81 A~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~--~efl~Ls~~~l~~ 158 (413)
|++||+++++++|++||.+ +|+++||+.++.+|+ .++|++|.++|.+||.+||.++.+ + ++|+.||. .+
T Consensus 100 A~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~----~y~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~ 170 (480)
T PHA02790 100 SILTSVEFIIYTCINFILR-DFRKEYCVECYMMGI----EYGLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM---KL 170 (480)
T ss_pred HHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHH----HhCHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH---HH
Confidence 9999999999999999999 899999999999998 459999999999999999999997 6 89999996 67
Q ss_pred cccCCCcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhccc-CCCCCCCHHHHHhhhccCCCCchHHHHHHHHHHHH
Q 015086 159 ILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARF-IRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFF 237 (413)
Q Consensus 159 lL~sd~L~v~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~-VRf~lls~~~L~~~v~~~~l~~~~c~~ll~ea~~~ 237 (413)
||++|+|+|.+|++||+|+++|++|+ ..|.+++ .+++++ ||+++|++.++.. +..++.++..+
T Consensus 171 lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~-----------~~~~~~~~~~~ 234 (480)
T PHA02790 171 ILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINN-----------VKWILDCTKIF 234 (480)
T ss_pred hcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHH-----------HHHHHHHHHHh
Confidence 99999999999999999999999996 4566666 566666 8999999888753 23445555544
Q ss_pred hhcCcccc----cc----ccccc----ccC-CcccceeEEEEecC------CceEEEecCCCCeEEe---ccccccceee
Q 015086 238 KAEAPHRQ----RT----LAAEE----SVT-LNRRFVERAYKYRP------VKVVEFERPRQQCVVY---LDLKREECEN 295 (413)
Q Consensus 238 ~~~~~~~q----~~----~~~~~----~~p-~~r~~~~~l~~~~~------~~~ve~ydp~~~~W~~---l~~~r~~~~~ 295 (413)
+..+..+. +. ..... ... ......+.+|+.|+ .+++++|||.+++|.. |+.+|..+++
T Consensus 235 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~ 314 (480)
T PHA02790 235 HCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG 314 (480)
T ss_pred hccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE
Confidence 43211000 00 00000 000 00112256777433 4689999999999999 8889999999
Q ss_pred eeeCCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeee
Q 015086 296 LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQ 338 (413)
Q Consensus 296 ~~~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (413)
+++||+||+ +||..-. ...-+|||.. ..|-..-.|.
T Consensus 315 v~~~~~iYv----iGG~~~~-~sve~ydp~~--n~W~~~~~l~ 350 (480)
T PHA02790 315 VPANNKLYV----VGGLPNP-TSVERWFHGD--AAWVNMPSLL 350 (480)
T ss_pred EEECCEEEE----ECCcCCC-CceEEEECCC--CeEEECCCCC
Confidence 999999999 6664321 2223566653 3444333343
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=391.21 Aligned_cols=304 Identities=16% Similarity=0.273 Sum_probs=251.0
Q ss_pred CCcEEEEe----eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015086 2 DCSTVVRV----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 77 (413)
Q Consensus 2 ~~DV~l~v----~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~l 77 (413)
.|||+|.+ ++|+|||.|||++|+||++||+++|+ +++|+|+ + ++++|+.+|+|+|||++.++. +++++|
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~l 81 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNVKDI 81 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHHHHH
Confidence 69999998 46999999999999999999999998 5788888 7 999999999999999999988 999999
Q ss_pred HHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHh
Q 015086 78 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVE 157 (413)
Q Consensus 78 L~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~ 157 (413)
|.+|++||++.|++.|++||.+ .++.+||+.++.+|+. +++.+|.+.|.+||.+||.++.+ +++|++||.+.+.
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~----~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~ 155 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFF----YGCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHHHHH
Confidence 9999999999999999999999 8999999999999974 59999999999999999999999 9999999999999
Q ss_pred hcccCCCcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCCCCCCCHHHHHhhhc------cCCCC-chHHHHH
Q 015086 158 AILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLT------CNDFD-HDVASKL 230 (413)
Q Consensus 158 ~lL~sd~L~v~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~------~~~l~-~~~c~~l 230 (413)
.||++|+|+|.+|++||+++++|++++ .++|.+++ ++||++||||+|++++|.+++. .++++ ++.|..+
T Consensus 156 ~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (534)
T PHA03098 156 KILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKI 231 (534)
T ss_pred HHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHH
Confidence 999999999999999999999999999 78899999 8999999999999999998774 44443 4678888
Q ss_pred HHHHHHHhhcCccccc----cc----------------c--ccc-----ccCCcccc-----eeEEEEecC-------Cc
Q 015086 231 VLEALFFKAEAPHRQR----TL----------------A--AEE-----SVTLNRRF-----VERAYKYRP-------VK 271 (413)
Q Consensus 231 l~ea~~~~~~~~~~q~----~~----------------~--~~~-----~~p~~r~~-----~~~l~~~~~-------~~ 271 (413)
+.++..++.....+.+ .+ . ..+ ..|....+ .+.+|+.|+ .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 311 (534)
T PHA03098 232 IYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVN 311 (534)
T ss_pred HHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeec
Confidence 8888765421000000 00 0 000 01100111 145666332 35
Q ss_pred eEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCcc--ceeccccccCCCC
Q 015086 272 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG--FFLSAHCNMDQQS 326 (413)
Q Consensus 272 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~--~~~~~~~~~~~~~ 326 (413)
.+..|||.+++|.. ||.+|.++++++++|+||+ +||.. ..+...-.||+.+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv----~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYV----IGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEE----EeCCCCCEecceEEEEcCCC
Confidence 79999999999998 7779999999999999999 55643 2233334566654
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.97 E-value=9.1e-31 Score=249.19 Aligned_cols=207 Identities=21% Similarity=0.330 Sum_probs=189.7
Q ss_pred CCcEEEEe--eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC--hhhHHHH
Q 015086 2 DCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA--APALLDV 77 (413)
Q Consensus 2 ~~DV~l~v--~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~--~~nv~~l 77 (413)
.+||+++| ++|||||+|||++|.|||+|+.+||.|+.+..|.|+ +-..++|..+|+|||||++.+.. .+...+.
T Consensus 44 y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~ 121 (620)
T KOG4350|consen 44 YSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDILLDY 121 (620)
T ss_pred ccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHHHHH
Confidence 37999999 469999999999999999999999999999999998 77899999999999999999765 3678999
Q ss_pred HHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHh
Q 015086 78 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVE 157 (413)
Q Consensus 78 L~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~ 157 (413)
|.+|++|++..|..+.++||++ -+..+|.+.+++.|.. +++++|.+.|..|+-+|..++.. .+.|..|+.+.|.
T Consensus 122 LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~l----y~l~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 122 LSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYL----YQLTDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHH----hcchHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHHH
Confidence 9999999999999999999999 5999999999998864 58999999999999999999999 9999999999999
Q ss_pred hcccCCCcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcccCCCCCCCHHHHHhhhccCCCCc
Q 015086 158 AILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH 224 (413)
Q Consensus 158 ~lL~sd~L~v~sE~~Vf~av~~Wi~~~~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~~~~l~~ 224 (413)
++|.+|..- ..|.++|.|+.+|-++| + .+.. +.+++.||+|+|+...|.+++...++..
T Consensus 196 e~l~RDsFf-ApE~~IFlAv~~W~~~N---s---ke~~-k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 196 ELLARDSFF-APELKIFLAVRSWHQNN---S---KEAS-KVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred HHHhhhccc-chHHHHHHHHHHHHhcC---c---hhhH-HHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 999999885 58999999999999998 3 2223 6799999999999999999999988865
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.91 E-value=3.8e-24 Score=208.77 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=186.1
Q ss_pred CCcEEEEee-------eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhH
Q 015086 2 DCSTVVRVK-------TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPAL 74 (413)
Q Consensus 2 ~~DV~l~v~-------~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv 74 (413)
.+|+.++|+ .|||||.|||..|+.|.+||++++.|....+|.++ ++++.+|..+|+|+|+..+.+.. +|+
T Consensus 114 ~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flYsdev~~~~-dtv 190 (521)
T KOG2075|consen 114 LADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLYSDEVKLAA-DTV 190 (521)
T ss_pred cceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHhcchhhhhH-HHH
Confidence 478888884 49999999999999999999999999877788888 99999999999999999999888 999
Q ss_pred HHHHHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhh-ccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCC-
Q 015086 75 LDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL-PSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALP- 152 (413)
Q Consensus 75 ~~lL~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~-a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls- 152 (413)
+.+|.+|++|-++.|.+.|.+||+. ++...|.+..+-. |.. ..-++|.+.|.+-|..+|.+... .+.|.+..
T Consensus 191 i~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~l----f~ep~Li~~c~e~id~~~~~al~-~EGf~did~ 264 (521)
T KOG2075|consen 191 ITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKL----FDEPSLISICLEVIDKSFEDALT-PEGFCDIDS 264 (521)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHh----hcCHHHHHHHHHHhhhHHHhhhC-ccceeehhh
Confidence 9999999999999999999999999 7888887766644 542 36789999999999999999998 89998888
Q ss_pred -HHHHhhcccCCCcCCCCHHHHHHHHHHHHHhc------CCChHHHHHHHHHHhcccCCCCCCCHHHHHhhhccCCCC
Q 015086 153 -LAGVEAILSSDDLQIASEDAVYDFVLKWARAQ------YPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD 223 (413)
Q Consensus 153 -~~~l~~lL~sd~L~v~sE~~Vf~av~~Wi~~~------~~~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~~~~l~ 223 (413)
.+.++++|+++.|.+ +|..+|+|+++|+... +.+.+.+++.+ .+.+..||||+|+.+++..-+++.++.
T Consensus 265 ~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~~e~sgIl 340 (521)
T KOG2075|consen 265 TRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEFARGVEQSGIL 340 (521)
T ss_pred HHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhhccCccccCCc
Confidence 999999999999998 5999999999999875 22345677888 799999999999999987655555543
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=2e-19 Score=172.08 Aligned_cols=174 Identities=18% Similarity=0.329 Sum_probs=160.5
Q ss_pred CCcEEEEe--eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEec--CCCCHHHHHHHHHHHccCcccCCChhhHHHH
Q 015086 2 DCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRI--NASEEAALMELLNFMYSNTLSTTAAPALLDV 77 (413)
Q Consensus 2 ~~DV~l~v--~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~--~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~l 77 (413)
++||++.+ .+.+.||.-|. .|+||.+||+|.|+|++++.|.|.+ +.|+..+|..++.-+|.++++|.. +.|..+
T Consensus 69 nSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l-~dv~gv 146 (488)
T KOG4682|consen 69 NSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL-SDVVGV 146 (488)
T ss_pred Ccceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-HHHHHH
Confidence 68999998 57899999997 5999999999999999998877765 469999999999999999999988 899999
Q ss_pred HHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHh
Q 015086 78 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVE 157 (413)
Q Consensus 78 L~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~ 157 (413)
|++|.++|++++.+.|.+.+.+ .+++.|++.+++.+.. |+.+.+++.|.+++..|+-.+.. ..-+.+++.+.+.
T Consensus 147 lAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ck----Ygle~vk~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 147 LAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACK----YGLESVKKKCLEWLLNNLMTIQN-VQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhh----hhhHHHHHHHHHHHHHhhHhhhh-HHHHHhcCHHHHH
Confidence 9999999999999999999999 8999999999999874 59999999999999999999987 5677789999999
Q ss_pred hcccCCCcCCCC-HHHHHHHHHHHHHh
Q 015086 158 AILSSDDLQIAS-EDAVYDFVLKWARA 183 (413)
Q Consensus 158 ~lL~sd~L~v~s-E~~Vf~av~~Wi~~ 183 (413)
.+|.|++|-|-+ |.++|..+..|+--
T Consensus 221 ~ll~SpnLfvmq~EfdLyttlk~WmfL 247 (488)
T KOG4682|consen 221 QLLGSPNLFVMQVEFDLYTTLKKWMFL 247 (488)
T ss_pred HHhCCCCeEEEEeeehHHHHHHHHHHh
Confidence 999999998766 99999999999843
No 8
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.76 E-value=3.6e-19 Score=145.12 Aligned_cols=103 Identities=34% Similarity=0.622 Sum_probs=92.2
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHhhcccCCCcCCCCHHHHHHHHHHHHHhcCC
Q 015086 107 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 186 (413)
Q Consensus 107 ~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~~lL~sd~L~v~sE~~Vf~av~~Wi~~~~~ 186 (413)
|+.++.+|.. +++.+|.++|.+||..||.++.+ +++|.+||.+.+..+|+++++++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~----~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEK----YGLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHH----TT-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHH----cChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 8889999974 59999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcccCCCCCCCHHHHHhhhc
Q 015086 187 RVEERREVLGSRLARFIRFPHMTCRKLKKVLT 218 (413)
Q Consensus 187 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~~v~ 218 (413)
+++|.+++ ++|+++||||+|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77899998 8999999999999999988763
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=4.2e-17 Score=134.47 Aligned_cols=95 Identities=27% Similarity=0.512 Sum_probs=83.8
Q ss_pred CCcEEEEee---eEEcchHhhcccCHHHHHhhcCC-CCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCC-ChhhHHH
Q 015086 2 DCSTVVRVK---TLHISSPILAAKSPFFYKLFSNG-MKESEQRHVALRINASEEAALMELLNFMYSNTLSTT-AAPALLD 76 (413)
Q Consensus 2 ~~DV~l~v~---~f~aHr~VLaa~S~yF~~mF~~~-~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~-~~~nv~~ 76 (413)
.||++|.++ .|+|||.||+++|+||++||.++ +.+....+|.++ ++++++|..+++|+|+|++.++ . +++.+
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ 86 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEINSD-ENVEE 86 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEEE-T-TTHHH
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccCCHH-HHHHH
Confidence 589999996 59999999999999999999997 566655567776 9999999999999999999987 6 89999
Q ss_pred HHHHHhhcchhhHHHHHhhhhhc
Q 015086 77 VLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 77 lL~aA~~lqi~~L~~~C~~~L~~ 99 (413)
++.+|++|+++.|++.|.++|.+
T Consensus 87 ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 87 LLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.68 E-value=1.7e-16 Score=128.42 Aligned_cols=99 Identities=27% Similarity=0.505 Sum_probs=89.5
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHhhcccCCCcCCCCHHHHHHHHHHHHHhcCC
Q 015086 107 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 186 (413)
Q Consensus 107 ~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~~lL~sd~L~v~sE~~Vf~av~~Wi~~~~~ 186 (413)
|+.++.+|+ .+++..|.+.|.+||.+||..+.+ +++|++||.+.+..+|++|+|+|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~----~~~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAE----LYGLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHH----HhChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 566777775 468999999999999999999998 8999999999999999999999889999999999999998
Q ss_pred ChHHHHHHHHHHhcccCCCCCCCHHHHHh
Q 015086 187 RVEERREVLGSRLARFIRFPHMTCRKLKK 215 (413)
Q Consensus 187 ~~~~R~~~l~~~Ll~~VRf~lls~~~L~~ 215 (413)
.+.|. ++ ..++++||||+|++..|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 77 8999999999999998865
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=6.6e-16 Score=121.10 Aligned_cols=88 Identities=27% Similarity=0.485 Sum_probs=81.4
Q ss_pred cEEEEe--eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHH
Q 015086 4 STVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAA 81 (413)
Q Consensus 4 DV~l~v--~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA 81 (413)
|+++.+ +.|++||.+|+++|+||++||.+++.++....+.++ ++++++|+.+++|+|++++.++. +++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 688888 469999999999999999999998888777888887 89999999999999999999988 7999999999
Q ss_pred hhcchhhHHHHHh
Q 015086 82 DKFEVASCMRYCS 94 (413)
Q Consensus 82 ~~lqi~~L~~~C~ 94 (413)
++|++++|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999985
No 12
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.62 E-value=1.3e-15 Score=133.53 Aligned_cols=152 Identities=16% Similarity=0.317 Sum_probs=130.5
Q ss_pred CCcEEEEee-----eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCCh-hhHH
Q 015086 2 DCSTVVRVK-----TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAA-PALL 75 (413)
Q Consensus 2 ~~DV~l~v~-----~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~-~nv~ 75 (413)
.+|+++.+. .+||||.||||+|++.. |.++-.|. ..+..+. ++++++|...++|+||.++.+... ..+.
T Consensus 66 fSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEidfk~dD~~L~ 140 (280)
T KOG4591|consen 66 FSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEIDFKEDDEFLL 140 (280)
T ss_pred ccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhccc--ccCHHHHHHhheeeeccccccccchHHHH
Confidence 589999994 49999999999999875 44443332 2334444 999999999999999999998652 4678
Q ss_pred HHHHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHH
Q 015086 76 DVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAG 155 (413)
Q Consensus 76 ~lL~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~ 155 (413)
++.+.|+.||++.|++.|.+-+.. -++++||+.++++|+.. +..+|...|...|+.++.++-+ ++|-+++...
T Consensus 141 el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~~W~dL~~--a~FaqMs~aL 213 (280)
T KOG4591|consen 141 ELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAGAWDDLGK--ADFAQMSAAL 213 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHhhccccCh--HHHHhccHHH
Confidence 999999999999999999999999 59999999999999854 7899999999999999999975 8999999999
Q ss_pred HhhcccCCCc
Q 015086 156 VEAILSSDDL 165 (413)
Q Consensus 156 l~~lL~sd~L 165 (413)
+..++.+..-
T Consensus 214 LYklId~kTe 223 (280)
T KOG4591|consen 214 LYKLIDGKTE 223 (280)
T ss_pred HHHHHcCCCc
Confidence 9999987753
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.46 E-value=4.5e-14 Score=145.42 Aligned_cols=136 Identities=15% Similarity=0.254 Sum_probs=116.5
Q ss_pred CCCcEEEEee-eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHcc-CcccCC----ChhhH
Q 015086 1 MDCSTVVRVK-TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYS-NTLSTT----AAPAL 74 (413)
Q Consensus 1 ~~~DV~l~v~-~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Yt-g~i~i~----~~~nv 74 (413)
+||||++.-+ .++|||++|.|+++||..||..-|.|++. |++....+..+.|+.+|+|+|+ .+..+- ..+.+
T Consensus 711 ~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 711 MDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3677777765 49999999999999999999999999876 5555447779999999999994 444431 23678
Q ss_pred HHHHHHHhhcchhhHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhcc
Q 015086 75 LDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 143 (413)
Q Consensus 75 ~~lL~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~ 143 (413)
.++|..||+|.+.+|+..|+.-|.+ .++..||-.++++|. .|++.+|...|.+||+.|...+..
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaa----mY~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAA----MYHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHH----HhhHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999 799999999999996 469999999999999999887764
No 14
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.15 E-value=3.5e-06 Score=81.28 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=99.2
Q ss_pred eeEEcchHhhcccCHHHHHhhcCCCCCCC--cceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhcchh
Q 015086 10 KTLHISSPILAAKSPFFYKLFSNGMKESE--QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVA 87 (413)
Q Consensus 10 ~~f~aHr~VLaa~S~yF~~mF~~~~~Es~--~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA~~lqi~ 87 (413)
...|||++++. +.+||..||.|++.|+. +....+.++.....+.+.+++|+|+.+..+.. +-+.+++-.|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhh
Confidence 35999999996 67899999999999954 22333434477888999999999999999988 8899999999999765
Q ss_pred ---hHHHHHhhhhhcC--CCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhc
Q 015086 88 ---SCMRYCSRLLRNM--PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMA 150 (413)
Q Consensus 88 ---~L~~~C~~~L~~~--~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~ 150 (413)
.|+.+...-|.++ .++.-|++.++..+= .-....|.+.+..|++.|...+.. .+++..
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~w----d~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~ 441 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCW----DLVACRLEQFAETHEARHLLLLLP-DPEGDS 441 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHhcC-CchhhH
Confidence 2444444444441 234445666665442 225678899999999999988887 777754
No 15
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.15 E-value=3.9e-06 Score=87.91 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCcEEEEee--eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEe----------cCCCCHHHHHHHHHHHccCcccCC
Q 015086 2 DCSTVVRVK--TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR----------INASEEAALMELLNFMYSNTLSTT 69 (413)
Q Consensus 2 ~~DV~l~v~--~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~----------~~~v~~~~~~~lL~y~Ytg~i~i~ 69 (413)
..|||+-|+ -|+|||.||+++|++||.+|-...+.+..+.|.+. +.++.|.+|+.+|+|+||...--.
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred cceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCC
Confidence 469999995 49999999999999999999764433333333333 569999999999999999843211
Q ss_pred --C-----------hhhHH-------HHHHHHhhcchhhHHHHHh
Q 015086 70 --A-----------APALL-------DVLMAADKFEVASCMRYCS 94 (413)
Q Consensus 70 --~-----------~~nv~-------~lL~aA~~lqi~~L~~~C~ 94 (413)
+ .+|.. .+...+.+|++.+|...-.
T Consensus 638 ~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 638 WHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred ccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 1 12333 3777788888887776443
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.13 E-value=3.1e-06 Score=89.31 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred eEEEEec------CCceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCccceeccccccCCCCCceeee
Q 015086 262 ERAYKYR------PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG 332 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~ 332 (413)
+.||+.| .+++||+|||.+++|.. |+.+|..+|+++++|+||++|+.-|+.+ ++.....|||.+ ..|.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~-~l~sve~YDP~t--~~W~ 457 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN-CLNSVECYDPET--NTWT 457 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc-ccceEEEEcCCC--Ccee
Confidence 4578733 36799999999999999 7889999999999999999664444444 567777899996 7888
Q ss_pred eEEeeeccCC
Q 015086 333 LFLGMQEKGS 342 (413)
Q Consensus 333 ~~~~~~~~~~ 342 (413)
..-.|+..++
T Consensus 458 ~~~~M~~~R~ 467 (571)
T KOG4441|consen 458 LIAPMNTRRS 467 (571)
T ss_pred ecCCcccccc
Confidence 8888876543
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.0001 Score=67.94 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=77.1
Q ss_pred EEEEee--eEEcchHhhcccCHHHHHhhcCCCC--CCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHH
Q 015086 5 TVVRVK--TLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLM 79 (413)
Q Consensus 5 V~l~v~--~f~aHr~VLaa~S~yF~~mF~~~~~--Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~-~~nv~~lL~ 79 (413)
|.|.|+ .|..++.-|.....+|++|+.+++. -..++.|-| |=+|.-|+.||+||-.|.+.+.+ ...+.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 446664 4999999999999999999999764 233456777 67999999999999999988754 256889999
Q ss_pred HHhhcchhhHHHHHhhhhhc
Q 015086 80 AADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 80 aA~~lqi~~L~~~C~~~L~~ 99 (413)
-|.+|++++|++.|..-+..
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhh
Confidence 99999999999999997766
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.65 E-value=5e-05 Score=60.60 Aligned_cols=86 Identities=15% Similarity=0.271 Sum_probs=64.0
Q ss_pred EEEEee--eEEcchHhhc-ccCHHHHHhhcCC---CCCCCcceEEEecCCCCHHHHHHHHHHHcc-CcccCCChhhHHHH
Q 015086 5 TVVRVK--TLHISSPILA-AKSPFFYKLFSNG---MKESEQRHVALRINASEEAALMELLNFMYS-NTLSTTAAPALLDV 77 (413)
Q Consensus 5 V~l~v~--~f~aHr~VLa-a~S~yF~~mF~~~---~~Es~~~~v~L~~~~v~~~~~~~lL~y~Yt-g~i~i~~~~nv~~l 77 (413)
|+|.|+ .|.+-+..|. ....+|.+|+.++ .....+.++-| +-+|..|+.||+|+.+ +.+..........+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 678884 4889888888 5567999999864 23345567766 6799999999999999 67776533678999
Q ss_pred HHHHhhcchhhH-HHHH
Q 015086 78 LMAADKFEVASC-MRYC 93 (413)
Q Consensus 78 L~aA~~lqi~~L-~~~C 93 (413)
+.-|.+|+++++ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 7776
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.64 E-value=5.7e-05 Score=72.55 Aligned_cols=88 Identities=10% Similarity=0.290 Sum_probs=73.4
Q ss_pred eeEEcchHhhcccCHHHHHhhcCCCCC-CCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhcchhh
Q 015086 10 KTLHISSPILAAKSPFFYKLFSNGMKE-SEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS 88 (413)
Q Consensus 10 ~~f~aHr~VLaa~S~yF~~mF~~~~~E-s~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA~~lqi~~ 88 (413)
+.|.|.+.+|-..=.||+..+.....+ ...++|.|.+ .-+-.+|+-+++|+......++. .||..||.-|++|||++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 369999999999999999999653222 2234566654 56889999999999998888877 99999999999999999
Q ss_pred HHHHHhhhhhc
Q 015086 89 CMRYCSRLLRN 99 (413)
Q Consensus 89 L~~~C~~~L~~ 99 (413)
|++.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 99999888866
No 20
>PHA02713 hypothetical protein; Provisional
Probab=97.59 E-value=0.00015 Score=76.55 Aligned_cols=72 Identities=8% Similarity=0.061 Sum_probs=53.4
Q ss_pred eEEEEecC------CceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCccc------------------
Q 015086 262 ERAYKYRP------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF------------------ 314 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~~------------------ 314 (413)
+.||+.|+ +++||+|||.+++|.. ||.+|..+++++++|+||+ +||...
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYv----iGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYI----IGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEE----EeCCCccccccccccccccccccc
Confidence 56888443 4689999999999998 8899999999999999999 555321
Q ss_pred --eeccccccCCCCCceeeeeEEeeec
Q 015086 315 --FLSAHCNMDQQSSFHCFGLFLGMQE 339 (413)
Q Consensus 315 --~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (413)
.+...-.|||.+ ..|...-.|..
T Consensus 428 ~~~~~~ve~YDP~t--d~W~~v~~m~~ 452 (557)
T PHA02713 428 THSSNKVIRYDTVN--NIWETLPNFWT 452 (557)
T ss_pred ccccceEEEECCCC--CeEeecCCCCc
Confidence 133445788885 56665555544
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.52 E-value=9.1e-05 Score=68.82 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=55.8
Q ss_pred cEEEEeeeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC--hhhHHHHHHHH
Q 015086 4 STVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA--APALLDVLMAA 81 (413)
Q Consensus 4 DV~l~v~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~--~~nv~~lL~aA 81 (413)
|+++.-..|++||++||+++|+|+.+.++.-.........+..-+++-++|+.+|.|+|||+.-... -.|+.-|-+++
T Consensus 134 diiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~ 213 (401)
T KOG2838|consen 134 DIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLC 213 (401)
T ss_pred eeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHH
Confidence 4444445699999999999999999887643322223223333389999999999999999876432 13444444455
Q ss_pred hhcch
Q 015086 82 DKFEV 86 (413)
Q Consensus 82 ~~lqi 86 (413)
.-|+.
T Consensus 214 edFG~ 218 (401)
T KOG2838|consen 214 EDFGC 218 (401)
T ss_pred HhhCC
Confidence 44443
No 22
>PHA03098 kelch-like protein; Provisional
Probab=97.51 E-value=0.00042 Score=72.87 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred eEEEEecC------CceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCccc---eeccccccCCCC
Q 015086 262 ERAYKYRP------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF---FLSAHCNMDQQS 326 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~~---~~~~~~~~~~~~ 326 (413)
+.+|+.|+ .+++++|||.+++|.. ||.+|..+++++++|+||+ +||... .+...-.||+.+
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv----~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYV----IGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEE----ECCcCCCCcccceEEEEeCCC
Confidence 46777333 5689999999999998 8889999999999999999 566321 123334556553
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=97.47 E-value=0.00026 Score=73.48 Aligned_cols=70 Identities=13% Similarity=-0.031 Sum_probs=50.9
Q ss_pred eEEEEecC---CceEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCccceeccccccCCCCCceeeeeEE
Q 015086 262 ERAYKYRP---VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFL 335 (413)
Q Consensus 262 ~~l~~~~~---~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 335 (413)
+.+|+.|+ .++||+|||.+++|.. ||.+|.++++++++|+||+ +||...-......|||.+ ..|...-
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYv----iGG~~~~~~~ve~ydp~~--~~W~~~~ 392 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYV----IGGHSETDTTTEYLLPNH--DQWQFGP 392 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEE----ecCcCCCCccEEEEeCCC--CEEEeCC
Confidence 56788544 3679999999999998 8889999999999999999 666432223334578775 5555433
Q ss_pred ee
Q 015086 336 GM 337 (413)
Q Consensus 336 ~~ 337 (413)
.|
T Consensus 393 ~m 394 (480)
T PHA02790 393 ST 394 (480)
T ss_pred CC
Confidence 33
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.43 E-value=7.5e-05 Score=69.38 Aligned_cols=97 Identities=20% Similarity=0.329 Sum_probs=69.1
Q ss_pred eEEcchHhhcccCHHHHHhhcCCCCCC---------CcceEEEecCCCCHHHHHH-HHHHHccCcccCCC----------
Q 015086 11 TLHISSPILAAKSPFFYKLFSNGMKES---------EQRHVALRINASEEAALME-LLNFMYSNTLSTTA---------- 70 (413)
Q Consensus 11 ~f~aHr~VLaa~S~yF~~mF~~~~~Es---------~~~~v~L~~~~v~~~~~~~-lL~y~Ytg~i~i~~---------- 70 (413)
++.||++|.|++|++||.++....+|. ....|.+. .-+-|.+|.. ++.+|||..+.++-
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 389999999999999999986544332 22355554 2355666665 68999998876431
Q ss_pred -----------------hhhHHHHHHHHhhcchhhHHHHHhhhhhcCCCChhhHHH
Q 015086 71 -----------------APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALL 109 (413)
Q Consensus 71 -----------------~~nv~~lL~aA~~lqi~~L~~~C~~~L~~~~l~~~n~l~ 109 (413)
...+++|++.|.+|.+.-|.++|.+.+.. ....++...
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~ 395 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNG 395 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccc
Confidence 12346788888899999999999988887 565555433
No 25
>smart00612 Kelch Kelch domain.
Probab=97.12 E-value=0.00069 Score=45.89 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=27.8
Q ss_pred CceEEEecCCCCeEEe---ccccccceeeeeeCC
Q 015086 270 VKVVEFERPRQQCVVY---LDLKREECENLFPSG 300 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g 300 (413)
.+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 5789999999999998 889999999988875
No 26
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.0002 Score=69.46 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHH---HHHHHHhhcchh
Q 015086 11 TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL---DVLMAADKFEVA 87 (413)
Q Consensus 11 ~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~---~lL~aA~~lqi~ 87 (413)
-+.+|+++++++|+.|++|+.....+..++.+++. +.++..++.+..|.|+..-.... .... .++.+|..++.+
T Consensus 111 ~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~ 187 (297)
T KOG1987|consen 111 FLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNR 187 (297)
T ss_pred EEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccccH
Confidence 47899999999999999999987776666667776 88999999999999996544223 3443 888999999999
Q ss_pred hHHHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHh--hhhhhcc
Q 015086 88 SCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLAS--RYKDMTK 143 (413)
Q Consensus 88 ~L~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~--nf~~v~~ 143 (413)
.++..|...+.+ .+...+...++..++. +....+...+..++.. +...+.+
T Consensus 188 ~lk~~~~~~l~~-~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 188 HLKLACMPVLLS-LIETLNVSQSLQEASN----YDLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred HHHHHHHHHHHH-HHHhhhhcccHHHhch----hHHHHHHHHHHHHHhccchHhHHHH
Confidence 999999999999 6888787777776653 3566777777777776 5555543
No 27
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.71 E-value=0.0046 Score=48.61 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=55.6
Q ss_pred eEEcchHhhcccCHHHHHhhcCCCC--CCCcceEEEecCCCCHHHHHHHHHHH-----ccCc-cc-----CCChhhHHHH
Q 015086 11 TLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFM-----YSNT-LS-----TTAAPALLDV 77 (413)
Q Consensus 11 ~f~aHr~VLaa~S~yF~~mF~~~~~--Es~~~~v~L~~~~v~~~~~~~lL~y~-----Ytg~-i~-----i~~~~nv~~l 77 (413)
+|-..|-+ |.-|.-.|+||++... |...++|.++ ++....++.+.+|+ |++. .. |.. +-+++|
T Consensus 28 efiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleL 103 (112)
T KOG3473|consen 28 EFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALEL 103 (112)
T ss_pred EEEEeehh-hhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHH
Confidence 45555543 4569999999998655 4556789998 99999999999998 7766 33 444 889999
Q ss_pred HHHHhhcc
Q 015086 78 LMAADKFE 85 (413)
Q Consensus 78 L~aA~~lq 85 (413)
|.||++|.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999985
No 28
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.58 E-value=0.0035 Score=62.06 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=33.3
Q ss_pred ceEEEecCCCCeEEe---ccc-cccceeeeeeCCeEEeeeeEecCc
Q 015086 271 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQAFHLGGQ 312 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+.||+|||.+++|.. ||. +|.++++++++|+||+ +||.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv----~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLL----INGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEE----Eeee
Confidence 689999999999998 775 6888999999999999 5664
No 29
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=96.58 E-value=0.017 Score=49.28 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCeEEeeeeEecCccceeccccc-cCCC-CCceeeeeEEeeeccCC---eeeEEEEEEeeecCC-cccccccccceEEEe
Q 015086 299 SGRVYSQAFHLGGQGFFLSAHCN-MDQQ-SSFHCFGLFLGMQEKGS---VSFAVDYEFAARSKP-TEEFVSKYKGNYTFT 372 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 372 (413)
+..+|+..|.+||....+...-+ .+.. +.--..++||....... -++.+.++|-.-... .+...++ ..+|.|.
T Consensus 16 ~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~~-~~~~~f~ 94 (137)
T cd03772 16 SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDDEPSFSR-RISHLFF 94 (137)
T ss_pred CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCCcccEEE-eeeeEEc
Confidence 66788999999997776644321 1110 11134677777643221 247777777654332 1333332 3346785
Q ss_pred -CCcccccccccCCCCcceeecCCcceecceeeeeeeeeee
Q 015086 373 -GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 412 (413)
Q Consensus 373 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..+|+.++ ++|.++.++++.|-+||-+-+++++||.
T Consensus 95 ~~~~~~G~~~f--i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 95 SKENDWGFSNF--MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCccchhe--eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 3567899888 8899999888999999999999999984
No 30
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.48 E-value=0.0035 Score=62.12 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=34.4
Q ss_pred eEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCcc
Q 015086 272 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 272 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
++|+|||.+++|.. ||.+|..+++++++|+||+ +||+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv----~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLL----IGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEE----EeccC
Confidence 78999999999998 8889999898899999999 77765
No 31
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=96.42 E-value=0.017 Score=49.47 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=71.3
Q ss_pred CCeEEeeeeEecCc---cceeccc-cccCCCCCceeeeeEEeeeccCCeeeEEEEEEeeecCCcccc-cccccceEEEeC
Q 015086 299 SGRVYSQAFHLGGQ---GFFLSAH-CNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEF-VSKYKGNYTFTG 373 (413)
Q Consensus 299 ~g~iY~~~f~~gg~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 373 (413)
+..+++..|.+||. ...+... .-.++.+ -..-.+||.+......++.+.|+|..-..-..+- ...-...+.|..
T Consensus 22 ~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~-~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~f~~ 100 (139)
T cd03774 22 GEVIKSSTFSSGANDKLKWCLRVNPKGLDEES-KDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ 100 (139)
T ss_pred CCEEECCCeecCCcCCceEEEEEeCCCCCCCC-CCeEEEEEEEccCCCCcEEEEEEEEEEecCCCeeeeecccCcEeCCC
Confidence 55788999999995 3444321 1111111 2345688876443333678888887643322221 111223477877
Q ss_pred CcccccccccCCCCcceeecCCcceecceeeeeeeeeeeC
Q 015086 374 GKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH 413 (413)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+..+||..+ ++++.+.+..+.|..||-|=+++++||+.
T Consensus 101 ~~~wG~~~f--i~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 101 GKDWGFKKF--IRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CCccCHHHe--eeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 778898886 77777776677799999999999999963
No 32
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.21 E-value=0.015 Score=47.21 Aligned_cols=78 Identities=8% Similarity=0.190 Sum_probs=54.7
Q ss_pred EEEEe---eeEEcchHhhcccCHHHHHhhcCCCCCC-CcceEEEecCCCCHHHHHHHHHHHccCcc-----------c--
Q 015086 5 TVVRV---KTLHISSPILAAKSPFFYKLFSNGMKES-EQRHVALRINASEEAALMELLNFMYSNTL-----------S-- 67 (413)
Q Consensus 5 V~l~v---~~f~aHr~VLaa~S~yF~~mF~~~~~Es-~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i-----------~-- 67 (413)
|+|+. ..|.+.+.+. ..|.-++.|+.+.-.+. ....|.++ +++..+|+.+++|++--+- .
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45555 3589999877 47999999998643222 22456665 9999999999999963211 1
Q ss_pred ------CCChhhHHHHHHHHhhcch
Q 015086 68 ------TTAAPALLDVLMAADKFEV 86 (413)
Q Consensus 68 ------i~~~~nv~~lL~aA~~lqi 86 (413)
++. +.+.+|+.||++|+|
T Consensus 81 D~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 222 578888888888875
No 33
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=96.17 E-value=0.024 Score=46.45 Aligned_cols=108 Identities=19% Similarity=0.341 Sum_probs=75.6
Q ss_pred eCCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeeeccCC----eeeEEEEEEeeecCCcccccccccceEEE-e
Q 015086 298 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS----VSFAVDYEFAARSKPTEEFVSKYKGNYTF-T 372 (413)
Q Consensus 298 ~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 372 (413)
.++.+|+..|..||....+....+-+.. .-...+++|-..+... -++.++|+|..-..-.++-..+....+.+ .
T Consensus 14 ~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (126)
T cd00121 14 EGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSE 92 (126)
T ss_pred CCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEeccCCcCCC
Confidence 4677888999999988888776543322 2357788887654432 46888999988776545544444444333 4
Q ss_pred CCcccccccccCCCCcceeecCCcceecceeeeeeeee
Q 015086 373 GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT 410 (413)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
.+..+|+.++ ++|.++..+.. .+||.|-.+++++
T Consensus 93 ~~~~~G~~~f--i~~~~l~~~~~--~~~d~l~i~~~v~ 126 (126)
T cd00121 93 KGSGWGFPKF--ISWDDLEDSYY--LVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCChHHe--eEHHHhccCCc--EECCEEEEEEEEC
Confidence 5778999877 88888876543 7999999998863
No 34
>PLN02153 epithiospecifier protein
Probab=96.03 E-value=0.011 Score=58.46 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred eEEEEecC------CceEEEecCCCCeEEe---c-----cccccceeeeeeCCeEEeeeeEecCc
Q 015086 262 ERAYKYRP------VKVVEFERPRQQCVVY---L-----DLKREECENLFPSGRVYSQAFHLGGQ 312 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W~~---l-----~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+.||+.++ .+.+++|||.+++|.. | |.+|..|++++.+++||+ +||.
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv----~GG~ 146 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYV----FGGV 146 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEE----ECCc
Confidence 56777333 4689999999999997 4 678999999999999999 6664
No 35
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=96.01 E-value=0.017 Score=47.27 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=67.9
Q ss_pred eeeEecCccceeccccccCCCCCceeeeeEEeeecc-----CCeeeEEEEEEeeecCCcccccccccceEEEeCCccccc
Q 015086 305 QAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGY 379 (413)
Q Consensus 305 ~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (413)
..|..||....+...-+-+ -..++++|..... ..-++.++++|-.-.....+ ..+...+++|+....+|+
T Consensus 17 ~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~~~~g~ 91 (119)
T PF00917_consen 17 FVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS-ISKRIKSHSFNNPSSWGW 91 (119)
T ss_dssp EESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE-EEEEEECEEECTTSEEEE
T ss_pred CeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc-ceeeeeeeEEeeecccch
Confidence 4677788888876654433 2356777776554 23347777766666544444 333323799999999999
Q ss_pred ccccCCCCcceeecCCcceecceeeeeeeeee
Q 015086 380 RNLFAIPWTSFMADDSLYFINGILHLRAELTI 411 (413)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
..+ ++|..+.... |.+||-|-+.++++|
T Consensus 92 ~~f--i~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 92 SSF--ISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--EEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred hhe--eEHHHhCccC--CeECCEEEEEEEEEC
Confidence 885 8888887766 899999999999986
No 36
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.94 E-value=0.0082 Score=60.32 Aligned_cols=38 Identities=13% Similarity=-0.096 Sum_probs=34.1
Q ss_pred eEEEecCCCCeEEe---ccccccceeeeeeCCeEEeeeeEecCcc
Q 015086 272 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 272 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
.+|.|||.+++|.. ||.+|.++++++++|+||+ +||..
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv----~GG~~ 353 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLL----IGGET 353 (376)
T ss_pred ehheEEecCCcccccCcCCCCccceEEEEeCCEEEE----EcCCC
Confidence 57999999999987 8999999999999999999 77754
No 37
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.90 E-value=0.014 Score=57.21 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=45.8
Q ss_pred eEEEEec------CCceEEEecCCCCeEEe---cc-ccccceeeeeeCCeEEeeeeEecCcc--ceeccccccCCCCCce
Q 015086 262 ERAYKYR------PVKVVEFERPRQQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQG--FFLSAHCNMDQQSSFH 329 (413)
Q Consensus 262 ~~l~~~~------~~~~ve~ydp~~~~W~~---l~-~~r~~~~~~~~~g~iY~~~f~~gg~~--~~~~~~~~~~~~~~~~ 329 (413)
+.||+.+ ..+.+++|||.+++|.. || .+|..+++++++|+||+ +||.. .+.. ...||+.+ .
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv----~GG~~~~~~~~-~~~yd~~~--~ 196 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYV----FGGGSNIAYTD-GYKYSPKK--N 196 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEE----EcCCCCccccc-eEEEecCC--C
Confidence 5678733 35789999999999998 55 36888888999999999 66643 1222 23667664 4
Q ss_pred eeee
Q 015086 330 CFGL 333 (413)
Q Consensus 330 ~~~~ 333 (413)
.|..
T Consensus 197 ~W~~ 200 (323)
T TIGR03548 197 QWQK 200 (323)
T ss_pred eeEE
Confidence 4543
No 38
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.90 E-value=0.014 Score=58.76 Aligned_cols=36 Identities=8% Similarity=-0.012 Sum_probs=31.5
Q ss_pred ceEEEecCCCCeEEe---ccc-cccceeeeeeCCeEEeee
Q 015086 271 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQA 306 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~iY~~~ 306 (413)
+.|++|||.+++|.. ||. +|.++++++++++||++|
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 579999999999998 775 688889999999999943
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.64 E-value=0.021 Score=56.04 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=43.2
Q ss_pred eEEEEecC------CceEEEecCCCCeE----Ee---ccccccceeeeeeCCeEEeeeeEecCcc--ceeccccccCCCC
Q 015086 262 ERAYKYRP------VKVVEFERPRQQCV----VY---LDLKREECENLFPSGRVYSQAFHLGGQG--FFLSAHCNMDQQS 326 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W----~~---l~~~r~~~~~~~~~g~iY~~~f~~gg~~--~~~~~~~~~~~~~ 326 (413)
+.||+.++ ++.+++||+.+++| .. ||.+|..+++++++|+||+ +||.. -.+.....||+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv----~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYV----GGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEE----EeCcCCCccCceEEEEcCCC
Confidence 45777333 57899999999998 44 7888999999999999999 55531 1133334566553
No 40
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=95.64 E-value=0.049 Score=45.94 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeeeccCCeeeEEEEEEeeec--CCcccccccccceEEEeCCcc
Q 015086 299 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARS--KPTEEFVSKYKGNYTFTGGKA 376 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (413)
+..+++..|.+||+...+....+=+..+.-...++||.+..+...++++++.|..-- .++ +.+ .....+.|+.+..
T Consensus 21 ~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~-~~~-~~~~~~~f~~~~~ 98 (132)
T cd03773 21 ADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPT-KNI-KREFASDFEVGEC 98 (132)
T ss_pred CcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCc-cce-EEeccccccCCCC
Confidence 568999999999988888766543322222357788877654334566666664322 233 222 2344677887778
Q ss_pred cccccccCCCCcceeecCCcceec--ceeeeeeee
Q 015086 377 VGYRNLFAIPWTSFMADDSLYFIN--GILHLRAEL 409 (413)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 409 (413)
+|+.++ ++...+. ++.|-.| |.|-+|.++
T Consensus 99 wG~~~F--i~~~~L~--~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 99 WGYNRF--FRLDLLI--NEGYLLPENDTLILRFSV 129 (132)
T ss_pred cCHHHh--ccHHHHh--hCCCcCCCCCEEEEEEEE
Confidence 898887 5566654 3556667 888888765
No 41
>PLN02153 epithiospecifier protein
Probab=95.55 E-value=0.023 Score=56.27 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=34.3
Q ss_pred CceEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCc
Q 015086 270 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 312 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
.+.+++|||.+++|.. +|.+|..+++++++++||+ +||+
T Consensus 216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv----~GG~ 260 (341)
T PLN02153 216 SNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII----FGGE 260 (341)
T ss_pred cCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE----ECcc
Confidence 4679999999999998 4678999999999999999 7775
No 42
>PF13964 Kelch_6: Kelch motif
Probab=95.23 E-value=0.022 Score=39.42 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=28.5
Q ss_pred cccceeeeeeCCeEEeeeeEecCccc---eeccccccCCCCCceeeee
Q 015086 289 KREECENLFPSGRVYSQAFHLGGQGF---FLSAHCNMDQQSSFHCFGL 333 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~f~~gg~~~---~~~~~~~~~~~~~~~~~~~ 333 (413)
+|.++++++++|+||+ +||... .+...+.||+.+ +.|-.
T Consensus 1 pR~~~s~v~~~~~iyv----~GG~~~~~~~~~~v~~yd~~t--~~W~~ 42 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYV----FGGYDNSGKYSNDVERYDPET--NTWEQ 42 (50)
T ss_pred CCccCEEEEECCEEEE----ECCCCCCCCccccEEEEcCCC--CcEEE
Confidence 5889999999999999 777654 355556777775 44443
No 43
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.20 E-value=0.049 Score=49.67 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=55.1
Q ss_pred HHHHHhhcCCC---CCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhcchhhHHHHHhh
Q 015086 24 PFFYKLFSNGM---KESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSR 95 (413)
Q Consensus 24 ~yF~~mF~~~~---~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA~~lqi~~L~~~C~~ 95 (413)
....+||.+.- .++.+.-+-| +-+|.-|+.||+|+-.|++.....-++.++|+.|++|||-+|++..++
T Consensus 34 SMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 34 SMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 45678998732 2344455555 679999999999999999886655789999999999999999987766
No 44
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.06 E-value=0.075 Score=52.96 Aligned_cols=89 Identities=17% Similarity=0.291 Sum_probs=66.5
Q ss_pred EEEEee--eEEcchHhhcccC--HHHHHhhcCCCCCCCcce--EEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHH
Q 015086 5 TVVRVK--TLHISSPILAAKS--PFFYKLFSNGMKESEQRH--VALRINASEEAALMELLNFMYSNTLSTTAAPALLDVL 78 (413)
Q Consensus 5 V~l~v~--~f~aHr~VLaa~S--~yF~~mF~~~~~Es~~~~--v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL 78 (413)
|.|.|+ -|...+.-|+... .+|-+++++.+.-.+... |-| |=+|+.|..||+|+-||++.+.. .....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 446774 3888888887655 699999998776443333 555 67999999999999999999976 4444444
Q ss_pred H-HHhhcchhhHHH---HHhhhh
Q 015086 79 M-AADKFEVASCMR---YCSRLL 97 (413)
Q Consensus 79 ~-aA~~lqi~~L~~---~C~~~L 97 (413)
. -|.+|+|++++. +|++-+
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCcccc
Confidence 4 899999999876 555543
No 45
>PLN02193 nitrile-specifier protein
Probab=95.00 E-value=0.044 Score=56.82 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=39.0
Q ss_pred eEEEEecC------CceEEEecCCCCeEEe---c---cccccceeeeeeCCeEEeeeeEecCc
Q 015086 262 ERAYKYRP------VKVVEFERPRQQCVVY---L---DLKREECENLFPSGRVYSQAFHLGGQ 312 (413)
Q Consensus 262 ~~l~~~~~------~~~ve~ydp~~~~W~~---l---~~~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+.||+.++ .+.+++|||.+++|.. | |.+|..|++++.+++||+ +||.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv----~GG~ 287 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV----FGGV 287 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE----ECCC
Confidence 46777332 5789999999999998 4 678999999999999999 6664
No 46
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.052 Score=47.68 Aligned_cols=86 Identities=12% Similarity=0.212 Sum_probs=62.5
Q ss_pred eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcc---------------cC-------
Q 015086 11 TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTL---------------ST------- 68 (413)
Q Consensus 11 ~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i---------------~i------- 68 (413)
.|.+-..+.. .|.-..+++...--......|.|+ .|+..+|..||+|++.-+- .+
T Consensus 16 ~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 16 IFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred eeehhHHHHH-HhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 4777777664 578888887652212111355555 9999999999999986221 11
Q ss_pred ---CChhhHHHHHHHHhhcchhhHHHHHhhhhhcC
Q 015086 69 ---TAAPALLDVLMAADKFEVASCMRYCSRLLRNM 100 (413)
Q Consensus 69 ---~~~~nv~~lL~aA~~lqi~~L~~~C~~~L~~~ 100 (413)
.. .++.+|..||++|+|++|.++||+.+..+
T Consensus 93 lk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~m 126 (162)
T KOG1724|consen 93 LKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANM 126 (162)
T ss_pred HhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 22 57899999999999999999999987663
No 47
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.82 E-value=0.039 Score=51.75 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=62.8
Q ss_pred eeEEEEecC-------CceEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCccceeccccccCCCCC
Q 015086 261 VERAYKYRP-------VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSS 327 (413)
Q Consensus 261 ~~~l~~~~~-------~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~ 327 (413)
.+.+|+.++ -+.+.+|||.++.|.. +|..|.+|+++|+++..|+ +||+.- .+.|- ++.
T Consensus 88 ~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~Myi----FGGye~--~a~~F---S~d 158 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYI----FGGYEE--DAQRF---SQD 158 (392)
T ss_pred cceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEE----ecChHH--HHHhh---hcc
Confidence 356777433 4578899999999997 8999999999999999999 888541 22221 233
Q ss_pred ceeeeeEEe----eeccCCee--------eEE---EEEEeeecCCcccccc
Q 015086 328 FHCFGLFLG----MQEKGSVS--------FAV---DYEFAARSKPTEEFVS 363 (413)
Q Consensus 328 ~~~~~~~~~----~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~ 363 (413)
+|.+.+..- |+-+++-+ ... =|-|..|+.-+|-|-|
T Consensus 159 ~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs 209 (392)
T KOG4693|consen 159 THVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHS 209 (392)
T ss_pred ceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccc
Confidence 465553322 33344322 222 3778888888887754
No 48
>PF13964 Kelch_6: Kelch motif
Probab=94.40 E-value=0.053 Score=37.49 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred eEEEEec-------CCceEEEecCCCCeEEe---ccccc
Q 015086 262 ERAYKYR-------PVKVVEFERPRQQCVVY---LDLKR 290 (413)
Q Consensus 262 ~~l~~~~-------~~~~ve~ydp~~~~W~~---l~~~r 290 (413)
+.||+.+ ..+.|++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5677732 35789999999999999 66665
No 49
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=94.18 E-value=0.37 Score=40.85 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeeeccCC--------eeeEEEEEEeeecCCcccc--cccccce
Q 015086 299 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS--------VSFAVDYEFAARSKPTEEF--VSKYKGN 368 (413)
Q Consensus 299 ~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~~~ 368 (413)
+..+++..|.+||....+...-+=+.. --..++||-+....+ -++.+.+.|..-- +.+.- .++ ...
T Consensus 14 ~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n-~~~~~~~~~~-~~~ 89 (134)
T cd03775 14 EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISN-PGDPSIQLSN-VAH 89 (134)
T ss_pred CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEc-CCCCccceEc-cce
Confidence 678999999999988877654432221 234678887643221 1367777776533 22211 222 457
Q ss_pred EEEeC-CcccccccccCCCCccee----ecCCcceecceeeeeeee
Q 015086 369 YTFTG-GKAVGYRNLFAIPWTSFM----ADDSLYFINGILHLRAEL 409 (413)
Q Consensus 369 ~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 409 (413)
|.|.. +..+|+..+ ++++.+- +.++.|..||.|=+.+++
T Consensus 90 ~~F~~~~~~wG~~~f--i~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 90 HRFNAEDKDWGFTRF--IELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred eEeCCCCCCCChhHc--ccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 88974 577888887 6676665 336778889988777665
No 50
>PLN02193 nitrile-specifier protein
Probab=94.01 E-value=0.095 Score=54.35 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred CceEEEecCCCCeEEec------cccccceeeeeeCCeEEeeeeEecCcc
Q 015086 270 VKVVEFERPRQQCVVYL------DLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~l------~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
.+.+++|||.+++|..+ |.+|..+++++++++||+ +||+.
T Consensus 342 ~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv----~GG~~ 387 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI----FGGEI 387 (470)
T ss_pred cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE----ECCcc
Confidence 47899999999999983 678999999999999999 77753
No 51
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.66 E-value=0.13 Score=53.51 Aligned_cols=51 Identities=6% Similarity=-0.062 Sum_probs=40.9
Q ss_pred CceEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCccceecccc
Q 015086 270 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHC 320 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~ 320 (413)
.+.+..||+.+++|.. .|.+|..|++++.++++++++.+.+|..++..++|
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ 245 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHI 245 (482)
T ss_pred eeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEe
Confidence 6789999999999998 67899999999999999996655544445544443
No 52
>PF13854 Kelch_5: Kelch motif
Probab=93.53 E-value=0.081 Score=35.31 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.5
Q ss_pred ccccccceeeeeeCCeEEeeeeEecCcc
Q 015086 286 LDLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 286 l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
+|.+|.+|++++.+++||+ +||+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi----~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYI----FGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEEE----EcCcc
Confidence 5889999999999999999 77866
No 53
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.52 E-value=0.21 Score=33.78 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=15.4
Q ss_pred cccceeeeeeCCeEEeee
Q 015086 289 KREECENLFPSGRVYSQA 306 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~ 306 (413)
+|.++++++++++||++|
T Consensus 1 pR~~~~~~~~~~~iyv~G 18 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIG 18 (47)
T ss_dssp -BBSEEEEEETTEEEEEE
T ss_pred CCccCEEEEECCEEEEEe
Confidence 588999999999999944
No 54
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.03 E-value=0.12 Score=35.50 Aligned_cols=29 Identities=10% Similarity=-0.147 Sum_probs=25.7
Q ss_pred CceEEEecCCCCeEEe---ccccccceeeeee
Q 015086 270 VKVVEFERPRQQCVVY---LDLKREECENLFP 298 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~ 298 (413)
.+.+..||+.+++|.. +|.+|..|+++++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 4689999999999999 8899999998763
No 55
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.85 E-value=0.59 Score=34.04 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=39.1
Q ss_pred EEEEe---eeEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHc
Q 015086 5 TVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMY 62 (413)
Q Consensus 5 V~l~v---~~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Y 62 (413)
|+|+. ..|.+.+.+.. .|..++.|+.+...+. . .|.|+ +++...|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~-~-~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDED-E-PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCG-T-EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccc-c-ccccC--ccCHHHHHHHHHHHH
Confidence 44555 35899988875 7999999998633222 2 56666 999999999999986
No 56
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=92.11 E-value=0.25 Score=51.45 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=35.0
Q ss_pred ceEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCcc
Q 015086 271 KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
..+..||+.+++|.. .|.+|.+|++++.+.++|+ +||.+
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~v----fGG~~ 183 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVV----FGGIG 183 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEE----ECCcc
Confidence 489999999999998 5889999999999999999 66644
No 57
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.51 E-value=0.3 Score=33.54 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.7
Q ss_pred cccceeeeeeCCeEEeeeeEecCc
Q 015086 289 KREECENLFPSGRVYSQAFHLGGQ 312 (413)
Q Consensus 289 ~r~~~~~~~~~g~iY~~~f~~gg~ 312 (413)
+|..|++++++++||+ +||.
T Consensus 1 ~r~~hs~~~~~~kiyv----~GG~ 20 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYV----FGGY 20 (49)
T ss_pred CccceEEEEECCEEEE----ECCc
Confidence 5888999999999999 6676
No 58
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=90.11 E-value=0.51 Score=44.51 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=34.6
Q ss_pred CceEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCcc
Q 015086 270 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~ 313 (413)
.+.+.+|||++..|.- -|.+|.+.+.++.++++|. +||.-
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~L----FGGTs 312 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYL----FGGTS 312 (392)
T ss_pred hcceeecccccchheeeeccCCCCCcccceeEEEECCEEEE----ecCCC
Confidence 5688999999999997 5778888888999999998 78854
No 59
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.78 E-value=0.37 Score=32.49 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.2
Q ss_pred eEEEEe-------cCCceEEEecCCCCeEEecc
Q 015086 262 ERAYKY-------RPVKVVEFERPRQQCVVYLD 287 (413)
Q Consensus 262 ~~l~~~-------~~~~~ve~ydp~~~~W~~l~ 287 (413)
+.||+. ..+++|++|||.+++|..++
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 467772 33679999999999999844
No 60
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=88.25 E-value=0.39 Score=36.77 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhcchhhHHHHHhhhhhcC--CCChhhHHHHHhhc
Q 015086 72 PALLDVLMAADKFEVASCMRYCSRLLRNM--PMTPESALLYLELP 114 (413)
Q Consensus 72 ~nv~~lL~aA~~lqi~~L~~~C~~~L~~~--~l~~~n~l~il~~a 114 (413)
+.+.+|+.||++|+|++|.+.|++.+..+ ..+++..-.++.+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 68999999999999999999999988762 34444444444433
No 61
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=1.5 Score=36.70 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=57.5
Q ss_pred EEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC---------------------
Q 015086 12 LHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA--------------------- 70 (413)
Q Consensus 12 f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~--------------------- 70 (413)
|.+.+.+ |-+|-..++|+.. +..-.+.++.+.|...+|+.+++|+-..+-..++
T Consensus 14 F~vd~~i-AerSiLikN~l~d----~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm 88 (158)
T COG5201 14 FRVDENI-AERSILIKNMLCD----STACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFM 88 (158)
T ss_pred EEehHHH-HHHHHHHHHHhcc----ccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHH
Confidence 6555544 4567777887764 2222344555699999999999999432211110
Q ss_pred ---hhhHHHHHHHHhhcchhhHHHHHhhhhhc
Q 015086 71 ---APALLDVLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 71 ---~~nv~~lL~aA~~lqi~~L~~~C~~~L~~ 99 (413)
.+.+.++..+|++|.++.|.++||+.+.+
T Consensus 89 ~vDqemL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 89 EVDQEMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HhhHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 03567888999999999999999998776
No 62
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=87.54 E-value=3.1 Score=35.68 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=54.5
Q ss_pred CCeEEeeeeEec--CccceeccccccCCCCCceeeeeEEeeeccCC-----eeeEEEEEEeeecCCcccccccccceEEE
Q 015086 299 SGRVYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS-----VSFAVDYEFAARSKPTEEFVSKYKGNYTF 371 (413)
Q Consensus 299 ~g~iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (413)
+..+++..|.+| |+.+.+...=+-+....-...++||.+..... .++.+.++|...-. .++ ...-...+++
T Consensus 22 ~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~-~~~-~~~~~~~~~~ 99 (149)
T cd00270 22 NTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQ-SDD-SKRKHITETF 99 (149)
T ss_pred CceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEEEEEECC-CCc-cccCceEEEE
Confidence 457889999999 87765543311111111134678877543321 23566666665542 222 0111112233
Q ss_pred e---------------CCcccccccccCCCCcceeecCCcceecceeeeeeee
Q 015086 372 T---------------GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAEL 409 (413)
Q Consensus 372 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
+ ....+|+..+ ++.+.+ .++.|..||.|-+|+++
T Consensus 100 ~~~~~~~~f~~~~~~~~~~~~G~~~f--i~~~~L--~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 100 MPDPNSSAFQRPPTGENNIGFGYPEF--VPLEKL--ESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EcCCchHhhcCCCcccCCCCcCcceE--eEHHHh--ccCCCEeCCEEEEEEEE
Confidence 2 2334455444 334333 34568889999999875
No 63
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=86.88 E-value=0.57 Score=45.75 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=99.2
Q ss_pred eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHHHHhhcchhhH
Q 015086 11 TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKFEVASC 89 (413)
Q Consensus 11 ~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~-~~nv~~lL~aA~~lqi~~L 89 (413)
.+++|+.+|+..|+.|..+....-.-+....+.+. +++..++..+..+.|.+ ++-.+ ......++.+...+-++..
T Consensus 37 ~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~ 113 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQP 113 (319)
T ss_pred hhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCc
Confidence 48999999999999998887654222333445555 78889999999999998 43222 2345567777778889999
Q ss_pred HHHHhhhhhcCCCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhh
Q 015086 90 MRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEV 148 (413)
Q Consensus 90 ~~~C~~~L~~~~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~ef 148 (413)
+..|...+..--++..|++..+..+..| ....|..+....+...|....+ ++.+
T Consensus 114 ~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~ 167 (319)
T KOG1778|consen 114 KADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKW 167 (319)
T ss_pred cccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCc
Confidence 9999988877237888999999888755 6788888999999888888876 5444
No 64
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.34 E-value=0.31 Score=47.90 Aligned_cols=83 Identities=13% Similarity=0.050 Sum_probs=54.9
Q ss_pred cEEEEee---eEEcchHhhcccCHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHH
Q 015086 4 STVVRVK---TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMA 80 (413)
Q Consensus 4 DV~l~v~---~f~aHr~VLaa~S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~a 80 (413)
|+++.++ .|.|||..|+++|++|..-+..-+ ....+|+=. .+-+.+|+.+++|+|-..=.+-. +.-.+++..
T Consensus 151 di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na~~~-~qynallsi 225 (516)
T KOG0511|consen 151 DIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNAEWK-DQYNALLSI 225 (516)
T ss_pred chHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhhhhh-hHHHHHHhh
Confidence 4555552 388999999999998865554322 123444333 67889999999999976222222 455777788
Q ss_pred HhhcchhhHHH
Q 015086 81 ADKFEVASCMR 91 (413)
Q Consensus 81 A~~lqi~~L~~ 91 (413)
..+|+++.+..
T Consensus 226 ~~kF~~e~l~~ 236 (516)
T KOG0511|consen 226 EVKFSKEKLSL 236 (516)
T ss_pred hhhccHHHhHH
Confidence 88777766543
No 65
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=85.44 E-value=1.9 Score=37.78 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=67.1
Q ss_pred EEEEeee--EEcchHhhcccCHHHHHhhcCCCCC----CCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHH
Q 015086 5 TVVRVKT--LHISSPILAAKSPFFYKLFSNGMKE----SEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVL 78 (413)
Q Consensus 5 V~l~v~~--f~aHr~VLaa~S~yF~~mF~~~~~E----s~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL 78 (413)
|.+.|++ |..-|.-|.--+.-|-.-|-..-.+ +...-..+- +-+|.-|..+|+|+-.|++.++. -.-..+|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~-l~eeGvL 99 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVL 99 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh-hhhhccc
Confidence 4556643 7778888888785665555443222 222223343 67899999999999999999887 5567899
Q ss_pred HHHhhcchhhHHHHHhhhhhc
Q 015086 79 MAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 79 ~aA~~lqi~~L~~~C~~~L~~ 99 (413)
+-|++|.+++|+++..+-|.+
T Consensus 100 ~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hhhhccCChHHHHHHHHHHHH
Confidence 999999999999887777765
No 66
>smart00061 MATH meprin and TRAF homology.
Probab=85.40 E-value=3.8 Score=31.50 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=51.0
Q ss_pred eCCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeeeccCCe----eeEEEEEEeeecCCcccccccccceEEEeC
Q 015086 298 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSV----SFAVDYEFAARSKPTEEFVSKYKGNYTFTG 373 (413)
Q Consensus 298 ~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (413)
.+..+++..|.+||....+....+ . .-.+++|...+.... ++.++++|..-.....+. ++ +..++|..
T Consensus 14 ~~~~~~S~~f~~~g~~W~i~~~p~----~--~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~-~~-~~~~~F~~ 85 (95)
T smart00061 14 EGESYFSPSEEHFNIPWRLKIYRK----N--GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL-SK-KDKHVFEK 85 (95)
T ss_pred cCceEeCChhEEcCceeEEEEEEc----C--CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE-ee-eeeEEEcC
Confidence 456788889999998888876655 2 236788876544322 477888887765554444 22 46788987
Q ss_pred Ccccccccc
Q 015086 374 GKAVGYRNL 382 (413)
Q Consensus 374 ~~~~~~~~~ 382 (413)
+..+|+.++
T Consensus 86 ~~~~G~~~f 94 (95)
T smart00061 86 PSGWGFSKF 94 (95)
T ss_pred CCccceeeE
Confidence 666776543
No 67
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=83.86 E-value=2.1 Score=36.79 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=52.7
Q ss_pred EEeeeeEe--cCccceeccccccCCCCCceeeeeEEeeeccCC-----eeeEEEEEEeeecCCccc-------ccccccc
Q 015086 302 VYSQAFHL--GGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS-----VSFAVDYEFAARSKPTEE-------FVSKYKG 367 (413)
Q Consensus 302 iY~~~f~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~ 367 (413)
|++..|.. ||+...+...=+-+..+.-...++||.+..+.. -++...++|..-- +.++ +.+. ..
T Consensus 25 i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lld-q~~~~~~~~~~~~~~-~~ 102 (147)
T cd03776 25 IHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLD-QSEPRQNIHETMMSK-PE 102 (147)
T ss_pred EECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeEEEEEC-CCcccCccEEEEEcC-CC
Confidence 77888864 687776644433222222233677877654322 1366666665432 2221 1111 11
Q ss_pred eEEEe------CCcccccccccCCCCcceee----cCCcceecceeeeeeeee
Q 015086 368 NYTFT------GGKAVGYRNLFAIPWTSFMA----DDSLYFINGILHLRAELT 410 (413)
Q Consensus 368 ~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 410 (413)
..+|. .+.++| |+.||. +.+.|..||-|.+|.+++
T Consensus 103 ~~~F~~p~~~~~~~~~G--------~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 103 LLAFQRPTTDRNPKGFG--------YVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred hHhhcCCCcCCCCCCee--------EceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 23343 123344 556665 456688899999999875
No 68
>PLN02772 guanylate kinase
Probab=81.96 E-value=2.6 Score=42.46 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=37.1
Q ss_pred eEEEEec-------CCceEEEecCCCCeEEe------ccccccceeeeee-CCeEEeee
Q 015086 262 ERAYKYR-------PVKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQA 306 (413)
Q Consensus 262 ~~l~~~~-------~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~-~g~iY~~~ 306 (413)
+.+|+.+ ....|.+||+.+++|.. -|.+|.+|+++++ +++|+++.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 6788833 24589999999999998 6889999999988 78999854
No 69
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=80.32 E-value=3.4 Score=41.49 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=34.5
Q ss_pred CceEEEecCCCCeEEe------ccccccceeeeee-CCeEEeeeeEecCcc
Q 015086 270 VKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGGQG 313 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~-~g~iY~~~f~~gg~~ 313 (413)
.+.|.+||..+-+|.. .|.+|++|+.++- .|.||+ .||+-
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v----yGGYs 252 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV----YGGYS 252 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE----Ecchh
Confidence 6789999999999998 5889999987765 999998 88854
No 70
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=78.22 E-value=3.2 Score=41.46 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=45.2
Q ss_pred CHHHHHhhcCCCCCCCcceEEEecCCCCHHHHHHHHHHH--ccCccc------------CCChhhHHHHHHHHhhcchhh
Q 015086 23 SPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM--YSNTLS------------TTAAPALLDVLMAADKFEVAS 88 (413)
Q Consensus 23 S~yF~~mF~~~~~Es~~~~v~L~~~~v~~~~~~~lL~y~--Ytg~i~------------i~~~~nv~~lL~aA~~lqi~~ 88 (413)
|+-|++++.- -....+.+. +++.+++-.+|.-. |. -+. +.. +||..++.+|..|++++
T Consensus 93 ~eAF~~lLrY----iYtg~~~l~--~~~ed~lld~LslAh~Yg-f~~Le~aiSeYl~~iL~~-~NvCmifdaA~ly~l~~ 164 (620)
T KOG4350|consen 93 SEAFRALLRY----IYTGKIDLA--GVEEDILLDYLSLAHRYG-FIQLETAISEYLKEILKN-ENVCMIFDAAYLYQLTD 164 (620)
T ss_pred HHHHHHHHHH----Hhhcceecc--cchHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHcc-cceeeeeeHHHHhcchH
Confidence 5667766542 122345555 66666555444332 21 111 223 78999999999999999
Q ss_pred HHHHHhhhhhc
Q 015086 89 CMRYCSRLLRN 99 (413)
Q Consensus 89 L~~~C~~~L~~ 99 (413)
|.+.|..|+..
T Consensus 165 Lt~~C~mfmDr 175 (620)
T KOG4350|consen 165 LTDYCMMFMDR 175 (620)
T ss_pred HHHHHHHHHhc
Confidence 99999999877
No 71
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=77.22 E-value=9.2 Score=30.04 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHhhcchhhHHHHHhhhhhcC-----------CCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhh----
Q 015086 75 LDVLMAADKFEVASCMRYCSRLLRNM-----------PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK---- 139 (413)
Q Consensus 75 ~~lL~aA~~lqi~~L~~~C~~~L~~~-----------~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~---- 139 (413)
.+++..|..++++.|.+.|.+|+... +++.+....++..-+. ...+-.++.+++.+++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l--~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL--NVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc--ccccHHHHHHHHHHHHHhCHHHHHH
Confidence 46889999999999999999999861 3344444555443221 012235688888888877754
Q ss_pred ---hhccCchhhhcCCHHHHhhcc
Q 015086 140 ---DMTKFQDEVMALPLAGVEAIL 160 (413)
Q Consensus 140 ---~v~~~~~efl~Ls~~~l~~lL 160 (413)
.+.+ .=.|..||.+.|.+.+
T Consensus 80 ~~~~Ll~-~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 80 HLKELLS-CIRFPLLSPEELQNVV 102 (103)
T ss_dssp THHHHHC-CCHHHCT-HHHHHHCC
T ss_pred HHHHHHH-hCCcccCCHHHHHHHH
Confidence 2222 2345556666665543
No 72
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.98 E-value=6 Score=40.76 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCceEEEecCCCCeEEe----------ccccccceeeeeeCCeEEeeeeEecCccceeccccccCCCCCceeeeeEEeee
Q 015086 269 PVKVVEFERPRQQCVVY----------LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQ 338 (413)
Q Consensus 269 ~~~~ve~ydp~~~~W~~----------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (413)
..++..|.|..+..|.. .|.+|.+|+++.+|.++|+ ..|++.|-.+ |+.| +-|-.|+.-=.
T Consensus 292 CTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYi----WSGRDGYrKA---wnnQ--VCCkDlWyLdT 362 (830)
T KOG4152|consen 292 CTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYI----WSGRDGYRKA---WNNQ--VCCKDLWYLDT 362 (830)
T ss_pred eccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEE----EeccchhhHh---hccc--cchhhhhhhcc
Confidence 35678899999999997 4667899999999999998 7776655222 2222 45555555444
Q ss_pred ccCC
Q 015086 339 EKGS 342 (413)
Q Consensus 339 ~~~~ 342 (413)
++.+
T Consensus 363 ekPp 366 (830)
T KOG4152|consen 363 EKPP 366 (830)
T ss_pred cCCC
Confidence 4443
No 73
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=73.71 E-value=4.1 Score=40.91 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=29.8
Q ss_pred ceEEEecCCCCeEEe-----ccccccce-eeeeeCCeEEeeeeEecC
Q 015086 271 KVVEFERPRQQCVVY-----LDLKREEC-ENLFPSGRVYSQAFHLGG 311 (413)
Q Consensus 271 ~~ve~ydp~~~~W~~-----l~~~r~~~-~~~~~~g~iY~~~f~~gg 311 (413)
+.+..||.++++|.. -|.||+.| +||+..|.+|+ +||
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~----fGG 140 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL----FGG 140 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE----ecc
Confidence 567899999999998 56788887 56667799998 666
No 74
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=71.25 E-value=8.7 Score=39.65 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=47.8
Q ss_pred EEEEecCCc-----eEEEecCCCCeEEe------ccccccceeeeeeCCeEEeeeeEecCccce-------eccccccCC
Q 015086 263 RAYKYRPVK-----VVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGFF-------LSAHCNMDQ 324 (413)
Q Consensus 263 ~l~~~~~~~-----~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~iY~~~f~~gg~~~~-------~~~~~~~~~ 324 (413)
.+|+.++++ ..-.-|..+-.|.. -|.+|+-|++.++|++.|+ +||---. ....|.|.=
T Consensus 217 kmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyv----fGGWVPl~~~~~~~~~hekEWkC 292 (830)
T KOG4152|consen 217 KMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYV----FGGWVPLVMDDVKVATHEKEWKC 292 (830)
T ss_pred eEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEE----ecceeeeeccccccccccceeee
Confidence 344455543 44556888889987 5789999999999999999 6662222 233477777
Q ss_pred CCCceeeee
Q 015086 325 QSSFHCFGL 333 (413)
Q Consensus 325 ~~~~~~~~~ 333 (413)
.+.+-|+.|
T Consensus 293 Tssl~clNl 301 (830)
T KOG4152|consen 293 TSSLACLNL 301 (830)
T ss_pred ccceeeeee
Confidence 788888874
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=67.79 E-value=9 Score=25.99 Aligned_cols=18 Identities=11% Similarity=-0.184 Sum_probs=15.5
Q ss_pred CceEEEecCCCCeEEecc
Q 015086 270 VKVVEFERPRQQCVVYLD 287 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~l~ 287 (413)
.+.++.||+.+++|..++
T Consensus 29 ~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 29 SNDVWVFDTETNQWTELS 46 (49)
T ss_pred cceeEEEECCCCEEeecC
Confidence 468999999999999854
No 76
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=67.73 E-value=34 Score=30.84 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=55.4
Q ss_pred eEEeeeeEec--CccceeccccccCCCCCceeeeeEEeeeccC-----CeeeEEEEEEeeecCC------cccccccccc
Q 015086 301 RVYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG-----SVSFAVDYEFAARSKP------TEEFVSKYKG 367 (413)
Q Consensus 301 ~iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~~~~~~~ 367 (413)
.||+..|..| |+.+++..--+=+-...-...++|+.+..+. +-++.-.++|+..-.. +..|.+.- .
T Consensus 62 ~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p-~ 140 (186)
T cd03777 62 SLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP-N 140 (186)
T ss_pred EEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEEEEEEEEcCCCccccccceeccCC-c
Confidence 5899999999 8888665533222222223467888775533 3366677777653332 11222221 1
Q ss_pred eEEEeC-----CcccccccccCCCCcceeecCCcceecceeeeeeeee
Q 015086 368 NYTFTG-----GKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT 410 (413)
Q Consensus 368 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
...|.. ..++||..+ ++.+.+ +.+.|--||.|-+|++..
T Consensus 141 ~~~F~rp~~~~n~~~G~~~F--i~~~~L--e~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 141 SSSFKKPTGEMNIASGCPVF--VAQTVL--ENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred cccccCCccCCCCCCCchhe--eEHHHh--ccCCcEeCCEEEEEEEEe
Confidence 134541 224555333 233322 345566688888887653
No 77
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=67.58 E-value=4.9 Score=27.18 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=12.7
Q ss_pred cccceeeeee-CCeEEeeeeEecCcc
Q 015086 289 KREECENLFP-SGRVYSQAFHLGGQG 313 (413)
Q Consensus 289 ~r~~~~~~~~-~g~iY~~~f~~gg~~ 313 (413)
+|..|+++.+ ++.||+ +||+.
T Consensus 1 pR~~h~~~~~~~~~i~v----~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYV----FGGRD 22 (49)
T ss_dssp --BS-EEEEE-TTEEEE----E--EE
T ss_pred CcceEEEEEEeCCeEEE----ECCCC
Confidence 5788888877 599999 66744
No 78
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=66.89 E-value=60 Score=28.69 Aligned_cols=26 Identities=12% Similarity=0.370 Sum_probs=20.0
Q ss_pred CCCCcceee----cCCcceecceeeeeeee
Q 015086 384 AIPWTSFMA----DDSLYFINGILHLRAEL 409 (413)
Q Consensus 384 ~~~~~~~~~----~~~~~~~~~~~~~~~~~ 409 (413)
+--|+.|+. ....|.-||.|.+++++
T Consensus 137 g~G~~~Fis~~~L~~r~ylk~dtl~i~~~~ 166 (167)
T cd03771 137 GYGWSTFISHSRLRRRDFLKGDDLIILLDF 166 (167)
T ss_pred ccccccceeHHHhccCCCCcCCEEEEEEEe
Confidence 677888887 34448888999998875
No 79
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=66.76 E-value=3.1 Score=40.48 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=44.5
Q ss_pred CCChhhHHHHHhhccccccccccHHHHHHHHHHHHhhhhhhccCchhhhcCCHHHHhhc
Q 015086 101 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI 159 (413)
Q Consensus 101 ~l~~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~nf~~v~~~~~efl~Ls~~~l~~l 159 (413)
.++++|++.|+--++ + -..++|.+.|..|+..|..+|+...-++..|+.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~-F---L~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSE-F---LQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhh-h---hccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 689999999875443 2 257899999999999999999984557778998877766
No 80
>PF13799 DUF4183: Domain of unknown function (DUF4183)
Probab=66.58 E-value=4.7 Score=31.33 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=22.4
Q ss_pred cccCCCCcceeecCC-------------cceecceeeeeeeeee
Q 015086 381 NLFAIPWTSFMADDS-------------LYFINGILHLRAELTI 411 (413)
Q Consensus 381 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 411 (413)
+=+.||=++|.+|+- .+||||||.-..-.||
T Consensus 18 ~~~tI~a~~f~dD~g~~~t~~~~~~sY~NLyINGvLQ~~~~ytv 61 (84)
T PF13799_consen 18 GTTTIPAPSFTDDAGNAVTAFPAVNSYYNLYINGVLQPGSLYTV 61 (84)
T ss_pred CceEeechhhccCCCCeeEeecccceEEEEEEEEEecCCcceEE
Confidence 455788888877753 5899999986654443
No 81
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.07 E-value=8.2 Score=37.15 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=52.0
Q ss_pred eEEcchHhhcccC-HHHHHhhcCCCC---CCCcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhcch
Q 015086 11 TLHISSPILAAKS-PFFYKLFSNGMK---ESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEV 86 (413)
Q Consensus 11 ~f~aHr~VLaa~S-~yF~~mF~~~~~---Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA~~lqi 86 (413)
.|-+.+.+|.+.- .-.-+||.++.. ....++.++. ++++..+|+.||+|--||.+.-...-.|-+|-+|+|+|.|
T Consensus 106 rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 106 RFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLV 184 (438)
T ss_pred EEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEe
Confidence 3667777776432 223556666432 1223455553 4899999999999999999986554567888888888876
Q ss_pred h
Q 015086 87 A 87 (413)
Q Consensus 87 ~ 87 (413)
+
T Consensus 185 p 185 (438)
T KOG3840|consen 185 P 185 (438)
T ss_pred e
Confidence 6
No 82
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=62.74 E-value=27 Score=30.17 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=30.8
Q ss_pred CCeEEeeeeEec--CccceeccccccCCCCCceeeeeEEeeecc-C----CeeeEEEEEEeee
Q 015086 299 SGRVYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-G----SVSFAVDYEFAAR 354 (413)
Q Consensus 299 ~g~iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~ 354 (413)
+..|++..|..| |+...+...=+=+....-...++||-+... . .-++...++|..-
T Consensus 22 ~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~~~ll 84 (154)
T cd03781 22 NLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRITFTLL 84 (154)
T ss_pred CceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEEEEEE
Confidence 457899999999 766554332111111112336777776542 1 2246677777654
No 83
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=60.62 E-value=35 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=34.2
Q ss_pred eEEeeee--EecCccceeccccccCCCCCceeeeeEEeeecc-----CCeeeEEEEEEeee
Q 015086 301 RVYSQAF--HLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAAR 354 (413)
Q Consensus 301 ~iY~~~f--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 354 (413)
.|++..| ..||+..+++.--+=+-+..-..-++||.+... -+-++...++|...
T Consensus 24 ~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsLl 84 (148)
T cd03780 24 SIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 84 (148)
T ss_pred EEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEEEEEE
Confidence 5899999 999998876554332222222346788877543 23357777777664
No 84
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.11 E-value=14 Score=36.49 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=30.6
Q ss_pred CceEEEecCCCCeEEecc----ccccceeeeeeCC-eEEeeeeEecCc
Q 015086 270 VKVVEFERPRQQCVVYLD----LKREECENLFPSG-RVYSQAFHLGGQ 312 (413)
Q Consensus 270 ~~~ve~ydp~~~~W~~l~----~~r~~~~~~~~~g-~iY~~~f~~gg~ 312 (413)
.+.+..|||..++|..|+ ..-..++++.+++ +||. +||.
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f----~GGv 155 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYF----FGGV 155 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEEE----Eccc
Confidence 457889999999999943 3445677888888 9998 7883
No 85
>PF11512 Atu4866: Agrobacterium tumefaciens protein Atu4866; InterPro: IPR020955 The function of the proteins in this entry is not known, though Atu4866 from Agrobacterium tumefaciens has been structurally characterised. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands []. Atu4866 has a potential ligand-binding site where it has a stretch of conserved residues on the surface. ; PDB: 2JMB_A.
Probab=51.80 E-value=14 Score=27.96 Aligned_cols=40 Identities=38% Similarity=0.635 Sum_probs=24.4
Q ss_pred cccccccccceEEEeCCcccccccccCCCCcceeecCCcceecceeee
Q 015086 358 TEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHL 405 (413)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
-|+.-+-|.|.|+.||+ -.-|.+= +-|.||.. |+|||||-
T Consensus 31 Rg~r~~AyqG~Y~v~G~-~I~Y~DD-----tGFtA~G~--f~dg~L~H 70 (78)
T PF11512_consen 31 RGGRESAYQGRYEVTGD-HIDYWDD-----TGFTADGE--FRDGVLHH 70 (78)
T ss_dssp ETTEEEEEEEEEEEETT-EEEEB-T-----TS-B--EE----SSEEEE
T ss_pred ccCccccceEEEEEECC-EEEEEec-----CCceeeee--EECCEEEe
Confidence 35666779999999988 4445322 34667665 88999995
No 86
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=49.14 E-value=90 Score=26.91 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=45.0
Q ss_pred EEeeeeEec--CccceeccccccCCCCCceeeeeEEeeeccC-----CeeeEEEEEEeeecCCcccccc--cccc---eE
Q 015086 302 VYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG-----SVSFAVDYEFAARSKPTEEFVS--KYKG---NY 369 (413)
Q Consensus 302 iY~~~f~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~ 369 (413)
||+..|.-+ |+..++..--+=+..+.-...++||.+.... .-++...++|...-.. ++-+. -++. .+
T Consensus 25 ~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~tfsLlDq~-~~~~~~~~~~~~~~~~ 103 (147)
T cd03779 25 LCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVTFMLLDQN-NREHVIDAFRPDLSSA 103 (147)
T ss_pred EECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEEEEEECCC-CCCCCcEeecCCcccc
Confidence 555555555 4444332221111111223456777665432 2256666666554321 21110 0111 24
Q ss_pred EEe-----CCcccccccccCCCCcceeecCCcceecceeeeeeee
Q 015086 370 TFT-----GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAEL 409 (413)
Q Consensus 370 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.|. .+.++||..+ ++.+.+-.-...|--||.+-+|.++
T Consensus 104 ~F~rP~~~~n~~~G~~~F--i~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 104 SFQRPVSDMNVASGCPLF--FPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred cccCcccCCCCCcchhhe--eEHHHhcccCCCcEeCCEEEEEEEE
Confidence 463 2335666554 3333332111145566666666654
No 87
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=45.88 E-value=57 Score=30.23 Aligned_cols=88 Identities=9% Similarity=0.151 Sum_probs=57.8
Q ss_pred EEEe-eeEEcchHh--hcccCHHHHHhhcCCCC--CCCcceEEEecCCCCHHHHHHHHHHHccCcccCCC-hhhHHHHHH
Q 015086 6 VVRV-KTLHISSPI--LAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLM 79 (413)
Q Consensus 6 ~l~v-~~f~aHr~V--Laa~S~yF~~mF~~~~~--Es~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~-~~nv~~lL~ 79 (413)
.+-| +.++.|+.- .+-.-....+||++... ...+....| +-+-..|+-||+|+-|..+.+.+ ..++..|..
T Consensus 12 ~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~r 88 (221)
T KOG2723|consen 12 ELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVR 88 (221)
T ss_pred eeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHH
Confidence 3455 346665432 33334456778876222 223345555 55778999999999996666544 246889999
Q ss_pred HHhhcchhhHHHHHhhh
Q 015086 80 AADKFEVASCMRYCSRL 96 (413)
Q Consensus 80 aA~~lqi~~L~~~C~~~ 96 (413)
-|++||++.....+.+-
T Consensus 89 EA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 89 EAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHccccHHHHHhcc
Confidence 99999999888765543
No 88
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=39.41 E-value=97 Score=23.65 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHHHHhhcchhhHHHHHhhhhhc
Q 015086 76 DVLMAADKFEVASCMRYCSRLLRN 99 (413)
Q Consensus 76 ~lL~aA~~lqi~~L~~~C~~~L~~ 99 (413)
+++.+|+.++.+.|.+.|.+|+.+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHH
Confidence 577788999999999999998766
No 89
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=38.88 E-value=25 Score=27.64 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=9.0
Q ss_pred eeecCCc-ceeccee
Q 015086 390 FMADDSL-YFINGIL 403 (413)
Q Consensus 390 ~~~~~~~-~~~~~~~ 403 (413)
|..||-. -||||.|
T Consensus 24 F~GDDDvWVFIn~kL 38 (90)
T TIGR02148 24 FRGDDDVWVFINNKL 38 (90)
T ss_pred EEcCCeEEEEECCEE
Confidence 5555443 4899976
No 90
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=37.23 E-value=61 Score=33.43 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=39.8
Q ss_pred CcceEEEecCCCCHHHHHHHHHHHccCcccCCChhhHHHHHHHHhhcchhhH-HHHHhh
Q 015086 38 EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASC-MRYCSR 95 (413)
Q Consensus 38 ~~~~v~L~~~~v~~~~~~~lL~y~Ytg~i~i~~~~nv~~lL~aA~~lqi~~L-~~~C~~ 95 (413)
..++.-+ |=+|.+|..|++|-+||++.....-......+--++++|++- ++.||.
T Consensus 79 ~~~EyfF---DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 79 VTNEYFF---DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred ccCeeee---ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHhH
Confidence 3566666 569999999999999999997653344455555688888754 455554
No 91
>PF13739 DUF4163: Domain of unknown function (DUF4163); PDB: 3CYG_B.
Probab=27.47 E-value=74 Score=24.49 Aligned_cols=31 Identities=32% Similarity=0.645 Sum_probs=22.1
Q ss_pred eeEEEEEEeeecCCcccccccccceEEEeCCcccc
Q 015086 344 SFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVG 378 (413)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (413)
.+.++|++.-. +.+++|-.-..|+|||| |=|
T Consensus 68 ~~~~~~~v~~~---~~~ilSi~~~~y~ytGG-AHG 98 (101)
T PF13739_consen 68 ELNIDYEVTYN---SDNILSISINYYSYTGG-AHG 98 (101)
T ss_dssp EEEEEEEEEEE----SSEEEEEEEEEEESSS-SS-
T ss_pred EEEEEEEEEec---CCCEEEEEEEeEEEcCC-CCC
Confidence 36667776644 68888888899999987 544
No 92
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.19 E-value=20 Score=38.07 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=45.0
Q ss_pred eEEEEEEeeecCCcccccccccceEEEeCCcccccc---cc-cCCCCcceeecCCcceecceeeeeeeeeee
Q 015086 345 FAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYR---NL-FAIPWTSFMADDSLYFINGILHLRAELTIR 412 (413)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+...|.++ |.-..-|.|.-|.+||-|||-+|=-. +| -|++|++.++.+.+ +|--+-|||+
T Consensus 760 INmqYyaS--Tvdn~~yGSGnKa~hnVvgg~GvmqGn~sdlr~GL~~qsv~a~~~~------~H~p~RL~vv 823 (880)
T COG3002 760 INMQYYAS--TVDNHRYGSGNKATHNVVGGIGVMQGNGSDLRCGLALQSVHAGQGW------RHEPLRLTVV 823 (880)
T ss_pred hhhhhhee--ccccccccCCchhhheeecceeEEeccccchhccchHHHHHhccCc------cccceeEEEE
Confidence 66677765 77788899999999999998555222 22 37899999887764 5877778776
No 93
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=25.83 E-value=81 Score=29.70 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCceEEEecCCC----CeEEe----ccccccceeee-eeCCeEEeeeeEecCcc
Q 015086 269 PVKVVEFERPRQ----QCVVY----LDLKREECENL-FPSGRVYSQAFHLGGQG 313 (413)
Q Consensus 269 ~~~~ve~ydp~~----~~W~~----l~~~r~~~~~~-~~~g~iY~~~f~~gg~~ 313 (413)
+.+.+..|+|.. ..|.+ |..+|.+-++. -.||+|.+ +||..
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlI----vGG~~ 138 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLI----VGGSN 138 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEE----EeCcC
Confidence 467888999886 67987 88899998655 46999998 77755
No 94
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=22.80 E-value=59 Score=26.21 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=24.1
Q ss_pred eeEecCccceeccccccCCCCC-ceeeeeEEe
Q 015086 306 AFHLGGQGFFLSAHCNMDQQSS-FHCFGLFLG 336 (413)
Q Consensus 306 ~f~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~ 336 (413)
+|.-+|.||-|+..|.+|+... +-+|..-+|
T Consensus 55 AFRs~g~WY~l~F~C~vd~d~~~V~sF~~~vG 86 (101)
T PF06059_consen 55 AFRSRGKWYDLSFRCEVDPDATKVTSFSFKVG 86 (101)
T ss_pred EEecCCeEEEEEEEEEECCCceEEEEEeeccC
Confidence 6778999999999999998753 366665555
No 95
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.11 E-value=1.1e+02 Score=19.53 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=12.8
Q ss_pred CeEEe-ccccccceeeeeeCCeEEe
Q 015086 281 QCVVY-LDLKREECENLFPSGRVYS 304 (413)
Q Consensus 281 ~~W~~-l~~~r~~~~~~~~~g~iY~ 304 (413)
..|.. ++. ....+.++.+|.||+
T Consensus 3 ~~W~~~~~~-~~~~~~~v~~g~vyv 26 (40)
T PF13570_consen 3 VLWSYDTGG-PIWSSPAVAGGRVYV 26 (40)
T ss_dssp EEEEEE-SS----S--EECTSEEEE
T ss_pred eeEEEECCC-CcCcCCEEECCEEEE
Confidence 36777 544 444567888999997
No 96
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=21.07 E-value=1e+02 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=27.4
Q ss_pred CC-hhhHHHHHhhccccccccccHHHHHHHHHHHHhh
Q 015086 102 MT-PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 137 (413)
Q Consensus 102 l~-~~n~l~il~~a~~~~~~~~~~~L~~~a~~fI~~n 137 (413)
++ .+++..++.+|.. ++++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~----~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADK----LQIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHH----TTBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhC
Confidence 44 7889999999975 48999999999999876
Done!