Query 015087
Match_columns 413
No_of_seqs 269 out of 1422
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 2.4E-78 8.1E-83 606.4 34.3 332 32-366 8-342 (343)
2 3acx_A Dehydrosqualene synthas 100.0 1.3E-56 4.3E-61 440.3 26.4 269 33-325 10-286 (293)
3 4hd1_A Squalene synthase HPNC; 100.0 1.9E-54 6.4E-59 425.3 25.1 270 33-325 11-282 (294)
4 3rmg_A Octaprenyl-diphosphate 94.7 1.2 4.2E-05 43.6 17.0 144 135-281 133-309 (334)
5 2q80_A Geranylgeranyl pyrophos 94.4 2.9 0.0001 40.2 18.7 143 136-281 112-283 (301)
6 1v4e_A Octoprenyl-diphosphate 94.3 0.86 2.9E-05 44.0 14.6 93 135-230 127-232 (299)
7 1wmw_A Geranylgeranyl diphosph 93.5 2.8 9.7E-05 40.8 16.9 94 135-231 130-241 (330)
8 1yhl_A Farnesyl pyrophosphate 93.3 4.1 0.00014 40.1 17.8 92 136-230 152-278 (362)
9 3tc1_A Octaprenyl pyrophosphat 93.0 2.3 7.8E-05 41.3 15.0 143 134-281 121-294 (315)
10 2ftz_A Geranyltranstransferase 92.4 4 0.00014 39.0 15.7 129 135-279 134-267 (284)
11 3p8l_A Geranyltranstransferase 92.1 3.6 0.00012 39.7 15.1 121 145-279 156-282 (302)
12 3p8r_A Geranyltranstransferase 91.9 5.2 0.00018 38.5 16.0 122 145-280 158-286 (302)
13 2qis_A Farnesyl pyrophosphate 91.8 8.2 0.00028 38.2 17.7 93 136-231 177-293 (374)
14 1rtr_A Geranyltranstransferase 91.7 2.2 7.6E-05 41.1 13.1 122 145-280 148-275 (301)
15 3lom_A Geranyltranstransferase 91.5 3.2 0.00011 40.2 14.1 130 136-280 144-287 (313)
16 3uca_A Geranyltranstransferase 91.4 5.8 0.0002 38.6 15.9 121 146-280 181-308 (324)
17 3mzv_A Decaprenyl diphosphate 91.3 1.4 4.9E-05 43.3 11.4 143 135-281 139-316 (341)
18 2e8v_A Geranylgeranyl pyrophos 91.1 5.8 0.0002 38.8 15.6 91 137-230 133-243 (340)
19 1rqj_A Geranyltranstransferase 91.1 3.8 0.00013 39.4 14.0 121 145-279 152-279 (299)
20 1uby_A FPS, farnesyl diphospha 91.0 8.9 0.00031 37.9 17.0 93 136-231 170-286 (367)
21 3lmd_A Geranylgeranyl pyrophos 91.0 2.3 7.7E-05 42.2 12.6 143 135-281 160-335 (360)
22 4dhd_A Polyprenyl synthetase; 90.9 1.7 5.8E-05 43.0 11.6 141 136-280 133-321 (358)
23 2ihi_A Pyrophosphate synthase; 90.4 15 0.00051 36.7 18.1 93 136-231 179-315 (395)
24 3pde_A Farnesyl-diphosphate sy 90.1 11 0.00038 36.4 16.4 118 146-277 156-279 (309)
25 3lk5_A Geranylgeranyl pyrophos 90.1 9.5 0.00033 37.9 16.4 90 139-231 179-287 (380)
26 4f62_A Geranyltranstransferase 90.1 2.8 9.6E-05 40.8 12.1 121 146-280 152-279 (317)
27 3aqb_B Component B of hexapren 89.9 5.5 0.00019 38.6 14.2 92 136-230 131-240 (325)
28 3lsn_A Geranyltranstransferase 89.7 4.4 0.00015 39.1 13.1 120 147-280 154-280 (304)
29 3ts7_A Geranyltranstransferase 89.7 3.7 0.00013 40.1 12.6 122 145-280 158-286 (324)
30 2h8o_A Geranyltranstransferase 89.0 2.6 8.9E-05 41.3 11.1 121 145-279 192-318 (335)
31 1wy0_A Geranylgeranyl pyrophos 89.0 8.5 0.00029 37.5 14.9 92 137-231 139-248 (342)
32 3m0g_A Farnesyl diphosphate sy 88.9 1.4 4.9E-05 42.4 9.0 122 145-280 147-273 (297)
33 3ipi_A Geranyltranstransferase 88.7 12 0.0004 35.9 15.3 128 136-280 128-266 (295)
34 3nf2_A Putative polyprenyl syn 87.9 8.3 0.00028 37.9 14.0 140 137-279 145-324 (352)
35 3oyr_A Trans-isoprenyl diphosp 87.5 8 0.00027 38.0 13.5 143 135-280 151-327 (345)
36 3pko_A Geranylgeranyl pyrophos 87.4 6.9 0.00024 38.2 13.0 143 135-280 143-316 (334)
37 3v1v_A 2-MIB synthase, 2-methy 87.4 26 0.00089 35.3 17.7 198 60-272 173-391 (433)
38 3apz_A Geranyl diphosphate syn 85.9 21 0.00071 34.8 15.6 142 135-279 153-323 (348)
39 3kb9_A EPI-isozizaene synthase 85.4 30 0.001 34.0 22.0 198 59-275 102-316 (382)
40 3dyh_A Farnesyl pyrophosphate 82.8 40 0.0014 33.5 19.2 93 136-231 180-307 (390)
41 2azj_A Geranylgeranyl pyrophos 81.4 37 0.0013 32.2 16.4 120 135-279 135-261 (289)
42 3npk_A Geranyltranstransferase 77.4 22 0.00076 33.9 11.9 121 144-280 144-270 (291)
43 1n1b_A (+)-bornyl diphosphate 74.0 87 0.003 32.5 23.5 188 62-270 287-497 (549)
44 3llw_A Geranyltranstransferase 71.3 30 0.001 33.3 11.2 118 145-278 159-283 (311)
45 2her_A Fragment, farnesyl pyro 66.3 1E+02 0.0035 30.3 16.4 139 137-280 170-338 (368)
46 2q58_A Fragment, farnesyl pyro 58.6 1E+02 0.0035 30.1 12.4 89 139-230 172-278 (368)
47 2j1p_A Geranylgeranyl pyrophos 58.2 1E+02 0.0034 29.2 11.9 105 146-278 161-274 (293)
48 1ps1_A Pentalenene synthase; a 58.0 1.2E+02 0.0043 28.4 25.1 195 61-275 64-274 (337)
49 3mav_A Farnesyl pyrophosphate 56.3 1.6E+02 0.0054 29.0 19.6 33 196-231 273-315 (395)
50 3kra_B Geranyl diphosphate syn 52.2 41 0.0014 31.7 8.0 73 137-209 136-219 (274)
51 1yyq_A Trichodiene synthase; t 46.7 2.2E+02 0.0075 27.9 19.3 168 57-242 80-257 (374)
52 1di1_A Aristolochene synthase; 38.3 2.3E+02 0.008 25.8 21.3 188 61-272 60-265 (300)
53 4fp4_A Polyprenyl synthetase; 32.0 1.6E+02 0.0056 27.8 8.6 75 135-215 133-210 (285)
54 3n0f_A Isoprene synthase; terp 30.5 4.7E+02 0.016 27.0 23.1 186 62-269 290-498 (555)
55 3qkc_B Geranyl diphosphate syn 29.3 1.1E+02 0.0036 28.7 6.8 73 137-209 138-220 (273)
56 2j5c_A 1,8-cineole synthase; t 24.5 6E+02 0.021 26.2 22.1 187 63-270 309-517 (569)
57 1yfb_A Transition state regula 24.2 32 0.0011 24.8 1.6 21 223-243 21-41 (59)
58 2ca5_A MXIH; transport protein 21.8 1.3E+02 0.0046 23.3 4.8 50 76-133 12-61 (85)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=2.4e-78 Score=606.42 Aligned_cols=332 Identities=49% Similarity=0.858 Sum_probs=316.0
Q ss_pred CCchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccC
Q 015087 32 PPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG 111 (413)
Q Consensus 32 ~~~~~~~~C~~il~~~srSF~~ai~~Lp~~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G 111 (413)
.+++++++|+++++++|+|||+++++||+++|++|+++|+|||.+|||+|+++.+++.|..+|++|++.+++.+|.|.+|
T Consensus 8 ~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~ 87 (343)
T 3vj8_A 8 SLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMES 87 (343)
T ss_dssp CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCC
T ss_pred cchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcCC
Confidence 46789999999999999999999999999999999999999999999999999888999999999999999888888756
Q ss_pred CCcchHHHhhHHHHHHHHhhccHHHHHHHHHHHHhhHhHHHhhhhccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC
Q 015087 112 TKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED 191 (413)
Q Consensus 112 ~~~~~~ll~~~~~v~~~f~~l~~~~~~lI~di~~~m~~gm~~dl~~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~ 191 (413)
++.+++++..++.++.+|..+++.++++|.+++++|++||++|+.++++|++||+.|||+|||+||+|++++|+..+.++
T Consensus 88 ~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~ 167 (343)
T 3vj8_A 88 KEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED 167 (343)
T ss_dssp CSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC
T ss_pred ChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCcc
Confidence 67778889999999999999999999999999999999999999989999999999999999999999999999753322
Q ss_pred C---ChhHHHHHHHHHHHHHHHHHhcHhhhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 015087 192 L---APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVE 268 (413)
Q Consensus 192 ~---~~~~~A~~mG~aLQltNILRD~~ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~ 268 (413)
+ ...+.|++||.|+|+||||||++||+. +||+|||.|+|++||++.+||..+++++++++|+++++.+|+.|+.
T Consensus 168 ~~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 168 PLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 2 235899999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhhhhhhhhHHHHHHHHHHHhcCCCCccCccccChhHHHHHHHHcCChhHHHHHHHHHHHHhcccCCC
Q 015087 269 DCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINK 348 (413)
Q Consensus 269 ~a~~yl~~L~~~~~~~f~aiP~~mAiatL~~~~~n~~vf~~~vki~k~~~~~l~~ra~~~~~v~~~~~~~~~~~~~k~~~ 348 (413)
+|+.|++.||++++++||++|++||++||..+++|++||+++|||+|++++|++|+++|+++|+.+|++|+++|++|++|
T Consensus 245 ~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~~~v~~~rvkisr~~~~~l~~ra~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
T 3vj8_A 245 DVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPD 324 (343)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhCCccccCCCcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHhhCCC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 015087 349 NDPNATKTLSRVEAIQKA 366 (413)
Q Consensus 349 ~dp~~~~~~~~~~~i~~~ 366 (413)
+||||.+|.++|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (343)
T 3vj8_A 325 SDPSSSKTRQIISTIRTQ 342 (343)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999874
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=1.3e-56 Score=440.34 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=244.4
Q ss_pred CchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccCC
Q 015087 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (413)
Q Consensus 33 ~~~~~~~C~~il~~~srSF~~ai~~Lp~~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~ 112 (413)
.+.++++|.++++++|+|||+++++||+++|++++++|+|||++|||+|+++.|.. |+||++.+.+ .+. |.
T Consensus 10 ~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~-----L~~w~~~l~~---~~~-g~ 80 (293)
T 3acx_A 10 MDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF-----LNQIKEDIQS---IEK-YP 80 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH-----HHHHHHHHHH---HHH-CT
T ss_pred hHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH-----HHHHHHHHHH---HhC-CC
Confidence 35679999999999999999999999999999999999999999999999886643 9999999986 345 54
Q ss_pred C------cchHHHhhHHHHHHHHhhccHHHHHHHHHHHHhhHhHHHhhhh-ccCCCHHHHHHHHHhhhhHHHHHHHHHhc
Q 015087 113 K------EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (413)
Q Consensus 113 ~------~~~~ll~~~~~v~~~f~~l~~~~~~lI~di~~~m~~gm~~dl~-~~~~T~~dl~~YC~~VAG~VG~ll~~l~~ 185 (413)
+ ++++++.+|..++++|..+.+.+.++|+ ||++|+. .+++|++||+.|||+|||+||+|++++||
T Consensus 81 ~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g 152 (293)
T 3acx_A 81 YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLID--------TVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS 152 (293)
T ss_dssp TSCCCCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH--------HHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CcccCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 4 5678889999999999988888888887 9999998 68999999999999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHhcHhhhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 015087 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (413)
Q Consensus 186 ~~~~~~~~~~~~A~~mG~aLQltNILRD~~ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~ 265 (413)
... .....+.|++||.|+|+||||||++||+. +||+|||.|+|.+||++.+|+.++++++++++++++++.+|+.
T Consensus 153 ~~~--~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 153 DHE--THQTYDVARRLGESLQLINILRDVGEDFE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp SSC--CHHHHHHHHHHHHHHHHHHHHHCHHHHHH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 631 13355899999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhHHHHHHHHHHHh-cCCCCccCccccChhHHHHHHHHc
Q 015087 266 HVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (413)
Q Consensus 266 hl~~a~~yl~~L~~~~~~~f~aiP~~mAiatL~~~~-~n~~vf~~~vki~k~~~~~l~~ra 325 (413)
||.+|+.++..+|.++ ..+|.++..++.++|..+. +|++ |++++++++++++++++++
T Consensus 228 ~~~~a~~~~~~lp~~~-r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a 286 (293)
T 3acx_A 228 DFRDVMDQIKVFSIEA-QPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEI 286 (293)
T ss_dssp HHHHHHHTGGGSCTTH-HHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCHHH-HHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHH
Confidence 9999999999999876 3456777899999999885 7899 9999999999999999986
No 3
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.9e-54 Score=425.28 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=224.6
Q ss_pred CchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccCC
Q 015087 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (413)
Q Consensus 33 ~~~~~~~C~~il~~~srSF~~ai~~Lp~~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~ 112 (413)
+.+++++|.++++++|+|||+++++||+++|++++++|+|||.+|||+|+.. +.|..+|++|++.+.. .+. |+
T Consensus 11 l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~---~~~~~~L~~~~~~l~~---~~~-g~ 83 (294)
T 4hd1_A 11 LRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFA---GDRMAALDAYEEELRR---AFA-GE 83 (294)
T ss_dssp GHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCC---SCHHHHHHHHHHHHHH---HHH-TC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHH---Hhc-CC
Confidence 5789999999999999999999999999999999999999999999999864 4577899999999986 355 76
Q ss_pred CcchHHHhhHHHHHHHHhhccHHHHHHHHHHHHhhHhHHHhhhh-ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC
Q 015087 113 KEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED 191 (413)
Q Consensus 113 ~~~~~ll~~~~~v~~~f~~l~~~~~~lI~di~~~m~~gm~~dl~-~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~ 191 (413)
+.+ |++.+|..++.+|..+.+.+.++|+ ||++|+. ++++|++||+.|||+|||+||+|++++|+.. +
T Consensus 84 ~~~-pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~ 151 (294)
T 4hd1_A 84 ATT-PAFRALQFTIATCNLPMEPFLRLIE--------ANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---D 151 (294)
T ss_dssp CCS-HHHHHHHHHHHHHTCCSHHHHHHHH--------HHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---S
T ss_pred CCC-HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---C
Confidence 654 5678899999999999989999888 9999997 7899999999999999999999999999852 3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcHhhhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 015087 192 LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCL 271 (413)
Q Consensus 192 ~~~~~~A~~mG~aLQltNILRD~~ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~ 271 (413)
....+.|.++|.|||+|||+||++||+. +||+|||.|+|.+||++++|+..++.++++..++.+++.+|+.||.++.
T Consensus 152 ~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 228 (294)
T 4hd1_A 152 DERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGR 228 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455889999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhhhhhhHHHHHHHHHHHh-cCCCCccCccccChhHHHHHHHHc
Q 015087 272 KYMSALRDHAIFRFCAIPQIMAIGTLALCY-NNIEVFRGVVKMRRGLTAKVIDRT 325 (413)
Q Consensus 272 ~yl~~L~~~~~~~f~aiP~~mAiatL~~~~-~n~~vf~~~vki~k~~~~~l~~ra 325 (413)
.++..+|..+. ..+.++..+...+|..+. +|++||++|+++++++++++++++
T Consensus 229 ~~~~~lp~~~r-~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~a 282 (294)
T 4hd1_A 229 RLESLVPPRLA-RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSV 282 (294)
T ss_dssp GGGGSSCHHHH-HHHHHHHHHHHHHHHHHHTTTTCCC------------------
T ss_pred HHHHhCCHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHH
Confidence 99999987752 233445556666776664 789999999999999999999986
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=94.72 E-value=1.2 Score=43.56 Aligned_cols=144 Identities=10% Similarity=0.059 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQl 207 (413)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++-.|......+++-.. +|... .....++.++|.|+|+
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 212 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQI 212 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888898888862 24688888877777777666666655322 22211 1123788999999999
Q ss_pred HHHHHhcH----------hhhhhCCCCCccccHHHHHHcCCCh--h---hhh-cccCCHHHHHH----------HHHHHH
Q 015087 208 TNIIRDYL----------EDINEIPKCRMFWPREIWSKYVNKL--E---DLK-YEENSDKAVQC----------LNDMVT 261 (413)
Q Consensus 208 tNILRD~~----------ED~~~~~~GR~ylP~e~l~~~g~~~--~---dl~-~~~~~~~~~~~----------l~~lv~ 261 (413)
.+=+-|+. .|+. .|.+=||-=..-+..... + ++. ++..++.-.+. +..-..
T Consensus 213 ~DD~ld~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~ 289 (334)
T 3rmg_A 213 KDDIFDYFDSKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACR 289 (334)
T ss_dssp HHHHHTTSCC------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHhccCCChhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 99888873 7888 588888864322222111 1 111 12222222221 233345
Q ss_pred HHHHHHHHHHHHHHhchhhh
Q 015087 262 NALMHVEDCLKYMSALRDHA 281 (413)
Q Consensus 262 ~A~~hl~~a~~yl~~L~~~~ 281 (413)
.+..+..+|...+..+|+..
T Consensus 290 ~~~~~~~~A~~~L~~lp~~~ 309 (334)
T 3rmg_A 290 TIEQYKKKAFDLLAALPDSN 309 (334)
T ss_dssp HHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHhCCCcH
Confidence 56777888888888887543
No 5
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=94.42 E-value=2.9 Score=40.21 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhHhHHHhhhhc--c--CCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCChhHHHHHHHHHHHHHHHH
Q 015087 136 YQDAIEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLAPDSLSNSMGLFLQKTNII 211 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~--~--~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~~~~~~A~~mG~aLQltNIL 211 (413)
..+++.+.+.+|..|-..|+.. . ..|.++|..-.++=.|......+++-...+..+.....++.++|.|+|+.+=+
T Consensus 112 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~~l~~~g~~lG~aFQi~DD~ 191 (301)
T 2q80_A 112 AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDY 191 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666787898888852 2 56899998877776666656665554332112234458999999999999888
Q ss_pred HhcH-----------hhhhhCCCCCccccHHHHHHcCCChhhh---h-cccCCHHHHH-HH---------HHHHHHHHHH
Q 015087 212 RDYL-----------EDINEIPKCRMFWPREIWSKYVNKLEDL---K-YEENSDKAVQ-CL---------NDMVTNALMH 266 (413)
Q Consensus 212 RD~~-----------ED~~~~~~GR~ylP~e~l~~~g~~~~dl---~-~~~~~~~~~~-~l---------~~lv~~A~~h 266 (413)
-|+. +|+. .|.+-||-=..-+.......+ . .+...+.... ++ ......+..+
T Consensus 192 ld~~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~ 268 (301)
T 2q80_A 192 ANLHSKEYSENKSFCEDLT---EGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKEL 268 (301)
T ss_dssp HHHHCC------CTTHHHH---HTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhcCChhhhCCCccchhh---cCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 7763 6777 488888874332322111111 1 2222333322 21 2333446667
Q ss_pred HHHHHHHHHhchhhh
Q 015087 267 VEDCLKYMSALRDHA 281 (413)
Q Consensus 267 l~~a~~yl~~L~~~~ 281 (413)
..+|...+..+|..+
T Consensus 269 ~~~A~~~L~~l~~~~ 283 (301)
T 2q80_A 269 EAKAYKQIDARGGNP 283 (301)
T ss_dssp HHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCCH
Confidence 777777777776543
No 6
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=94.32 E-value=0.86 Score=44.01 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNII 211 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~mG~aLQltNIL 211 (413)
...+++.+.+..|..|-..|+.. ...|.++|..-+++=.|......+++-.. +|........++.++|.|+|+.+=+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~ 206 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDI 206 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888898888862 23789998877777666665555554322 2222222347899999999999888
Q ss_pred HhcH----------hhhhhCCCCCccccH
Q 015087 212 RDYL----------EDINEIPKCRMFWPR 230 (413)
Q Consensus 212 RD~~----------ED~~~~~~GR~ylP~ 230 (413)
-|+. .|+. .|.+-||-
T Consensus 207 lD~~~d~~~GK~~g~Dl~---egK~T~p~ 232 (299)
T 1v4e_A 207 MDFAGMEKIGKDGFLDLK---NGVASFPL 232 (299)
T ss_dssp HHHTTCCSCCTTSSCCCT---TTTCCHHH
T ss_pred HHccCccccCCCcchHhh---CCCchHHH
Confidence 8864 4565 47777776
No 7
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=93.53 E-value=2.8 Score=40.79 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc-----cCCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC-CChhHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED-LAPDSLSNSMGLFLQ 206 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~-----~~~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~~~~-~~~~~~A~~mG~aLQ 206 (413)
...+++.+.+..|..|-..|+.. .-.|.++|..-+++=.|.. ..+.+++-.. +|... .....++.++|.|+|
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQ 209 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQ 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44455666777888898888854 3568888887777766666 5555555322 22211 114478999999999
Q ss_pred HHHHHHhc----------HhhhhhCCCCCccccHH
Q 015087 207 KTNIIRDY----------LEDINEIPKCRMFWPRE 231 (413)
Q Consensus 207 ltNILRD~----------~ED~~~~~~GR~ylP~e 231 (413)
+.|=+-|+ +.|+. .|.+=||-=
T Consensus 210 i~DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~i 241 (330)
T 1wmw_A 210 IVDDVLNLEGGEAYGKERAGDLY---EGKRTLILL 241 (330)
T ss_dssp HHHHHHHHSCSCCCSSSTTHHHH---HTCCCHHHH
T ss_pred HHHccCcccCCcccCCCcCchhh---CCCCCHHHH
Confidence 99888886 57888 488888863
No 8
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=93.28 E-value=4.1 Score=40.13 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhHhHHHhhhhcc-------------------CCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-C-CC-
Q 015087 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-T-ED- 191 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~~-------------------~~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~-~-~~- 191 (413)
..+++.+.+..|..|-..|+... -.|+++|..=+++=.|.. ....+++-.. +| . +.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 45566667778888988888632 257888877777666655 4444433211 12 1 11
Q ss_pred -CChhHHHHHHHHHHHHHHHHHhcH----------hhhhhCCCCCccccH
Q 015087 192 -LAPDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPR 230 (413)
Q Consensus 192 -~~~~~~A~~mG~aLQltNILRD~~----------ED~~~~~~GR~ylP~ 230 (413)
.....++.++|.|+|+.+=+-|+. .|+. .|.+=||-
T Consensus 232 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~ 278 (362)
T 1yhl_A 232 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLA 278 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHH
Confidence 122378999999999999888874 5777 58888886
No 9
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=92.96 E-value=2.3 Score=41.35 Aligned_cols=143 Identities=9% Similarity=0.048 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 015087 134 KGYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 209 (413)
Q Consensus 134 ~~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~mG~aLQltN 209 (413)
....+++.+.+..|..|-..|+.. .-.|.++|..-+.+=.|......+++-.. +|........++.++|.|+|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 200 (315)
T 3tc1_A 121 ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIID 200 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455666677788898888862 25688888766666666555555554332 22221123378999999999999
Q ss_pred HHHhc-----------HhhhhhCCCCCccccHHHHHHcCCChh------hhhcccCCHHHHHH----------HHHHHHH
Q 015087 210 IIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKYEENSDKAVQC----------LNDMVTN 262 (413)
Q Consensus 210 ILRD~-----------~ED~~~~~~GR~ylP~e~l~~~g~~~~------dl~~~~~~~~~~~~----------l~~lv~~ 262 (413)
=+-|+ +.|+. .|.+-||-=..-+. .+++ ++.... ++.-... +..-...
T Consensus 201 D~ld~~~d~~~~GK~~g~Dl~---egK~T~p~i~al~~-~~~~~~~~L~~~l~~~-~~~~~~~i~~li~~~ga~~~~~~~ 275 (315)
T 3tc1_A 201 DLLDITQDAKTLGKPNFSDFK---EGKTTLPYLLLYEK-LNQHDQGLLISYFKQD-SHEIIEWTKEKFKQYGIIEETLKT 275 (315)
T ss_dssp HHHTTSCCTTCCCCCCCCTGG---GTCCCHHHHHHHTT-SCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHhcccCCHHHhCCChhhHHH---cCChhHHHHHHHHh-CCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcChHHHHHHH
Confidence 88887 56787 58888886432222 2222 122222 3322222 2223334
Q ss_pred HHHHHHHHHHHHHhchhhh
Q 015087 263 ALMHVEDCLKYMSALRDHA 281 (413)
Q Consensus 263 A~~hl~~a~~yl~~L~~~~ 281 (413)
+..+..+|...+..+|+..
T Consensus 276 ~~~~~~~A~~~L~~lp~s~ 294 (315)
T 3tc1_A 276 AQVYSKKALEAIKGENNLI 294 (315)
T ss_dssp HHHHHHHHHHHTTTTCCHH
T ss_pred HHHHHHHHHHHHHhCCCcH
Confidence 5667777777777776543
No 10
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=92.38 E-value=4 Score=39.00 Aligned_cols=129 Identities=11% Similarity=0.014 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhHhHHHhhhh--cc--CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFIC--KE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTN 209 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~--~~--~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~mG~aLQltN 209 (413)
...+.+.+.+..|..|-..|+. .. -.|.++|..-.++=.|......+++-.. +|........++.++|.|+|+.+
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~D 213 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYD 213 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Confidence 4445555666788889888886 22 5789999888887777766666555322 22222234488999999999999
Q ss_pred HHHhcHhhhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015087 210 IIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 210 ILRD~~ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
=+-|+.-|..+ .|.-. | +|+. ..+-.....+..-...+..+..+|.+.+..+++
T Consensus 214 D~lD~~~d~~~--~GK~~---------g---~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 214 DLXDILGSFEK--VGKDL---------G---KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHHHHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhcCCHHh--hCCCc---------c---hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88898877653 34311 0 1222 122222223445556677777778777777763
No 11
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=92.11 E-value=3.6 Score=39.72 Aligned_cols=121 Identities=9% Similarity=-0.022 Sum_probs=69.0
Q ss_pred HhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHHhcHhhh
Q 015087 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (413)
Q Consensus 145 ~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltNILRD~~ED~ 218 (413)
..|..|-..|+. ..-.|.++|..-..+=.|......+++-.. +|... .....++.++|.|+|+.+=+-|+.-|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 356678888875 235688888876655555555555554322 22211 122378899999999999888875443
Q ss_pred hhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015087 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 219 ~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
.+ .|.- . -+|+.++..+=.....+..--..+..+..+|...+..+|+
T Consensus 236 ~~--~GK~---------~---g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 236 AD--LGKK---------V---GRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp -----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--hCCC---------h---hhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 2221 1 1455555555555555666667788888888888888864
No 12
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=91.88 E-value=5.2 Score=38.52 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=73.2
Q ss_pred HhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-C-CC--CChhHHHHHHHHHHHHHHHHHhcHhh
Q 015087 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-T-ED--LAPDSLSNSMGLFLQKTNIIRDYLED 217 (413)
Q Consensus 145 ~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~-~-~~--~~~~~~A~~mG~aLQltNILRD~~ED 217 (413)
..|..|-..|+. ..-.|.++|..-..+=.|....+.+++-.. +| . +. .....++.++|.|+|+.+=+-|+.-|
T Consensus 158 ~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~ 237 (302)
T 3p8r_A 158 QGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISD 237 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 357778888886 345688888877765555555555554322 12 1 11 12337899999999999877777544
Q ss_pred hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 218 ~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
-.+ .|. | . -+|+.++..+=...-.+..-...|..+..+|.+.+..+|+.
T Consensus 238 ~~~--~GK---~------~---g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 238 TET--LGK---P------Q---GSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHH--hCC---C------c---chHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 321 222 0 1 14565666665555567777788889999999999888764
No 13
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=91.79 E-value=8.2 Score=38.24 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhHhHHHhhhhcc----C----CCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 015087 136 YQDAIEDITKRMGAGMAKFICKE----V----ESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~~----~----~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~-~~~---~~~~~~A~~m 201 (413)
..+++.+.+..|..|-..|+... . .|.++|..-..+=.|.. ....+.+-.. +| ... .....++.++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~l 256 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 256 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 45566677788888988898622 1 58888888777766665 4444433221 22 111 1123788999
Q ss_pred HHHHHHHHHHHhcH----------hhhhhCCCCCccccHH
Q 015087 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 231 (413)
Q Consensus 202 G~aLQltNILRD~~----------ED~~~~~~GR~ylP~e 231 (413)
|+|+|+.+=+-|+. .|+. .|.+=||.=
T Consensus 257 G~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~l 293 (374)
T 2qis_A 257 GEFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLVV 293 (374)
T ss_dssp HHHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHHH
Confidence 99999999888874 5777 588888863
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=91.72 E-value=2.2 Score=41.09 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=75.5
Q ss_pred HhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHHhcHhhh
Q 015087 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 218 (413)
Q Consensus 145 ~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQltNILRD~~ED~ 218 (413)
..|..|-..|+. ..-.|.++|..-..+=.|......+++-.. +|.... ....++.++|.|+|+.+=+-|+.-|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 557778888886 235788998888877777666665554322 222111 22378999999999999888886554
Q ss_pred hhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 219 ~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
.+ .|.-. -+|+.++..+=.....+..-...+..+..+|...+..+|+.
T Consensus 228 ~~--~GK~~------------g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 228 AK--LGKKV------------GSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HH--hCCCc------------chHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 42 23210 14555555554455556666778888899999999888743
No 15
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=91.50 E-value=3.2 Score=40.24 Aligned_cols=130 Identities=9% Similarity=0.054 Sum_probs=74.6
Q ss_pred HHHHHHHHH-----HhhHhHHHhhhhc--c-CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCC-CCC----ChhHHHHHH
Q 015087 136 YQDAIEDIT-----KRMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-EDL----APDSLSNSM 201 (413)
Q Consensus 136 ~~~lI~di~-----~~m~~gm~~dl~~--~-~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~-~~~----~~~~~A~~m 201 (413)
..+++..+. ..|..|-..|+.. . -.|.++|..-..+=.|......+++ .. +|. .+. ....++.++
T Consensus 144 ~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~l 222 (313)
T 3lom_A 144 VVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHI 222 (313)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHH
Confidence 344554443 3567788888862 2 6788999887766666656666666 33 231 121 123788999
Q ss_pred HHHHHHHHHHHhcHhhhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 202 GLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 202 G~aLQltNILRD~~ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
|+|+|+.+=+-|+--|..+ .|. | . -+|+.++..+=...-.+..-...+..+..+|...+..+++.
T Consensus 223 GlaFQI~DDilD~~gd~~~--~GK---~------~---g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQI--LGK---G------R---SSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred HHHHHHHHHHHhccCCHHh--hCC---C------C---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999988887544321 122 0 0 13444444443333345556677788888888888788754
No 16
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=91.44 E-value=5.8 Score=38.64 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=68.0
Q ss_pred hhHhHHHhhhhcc---CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHHhcHhhh
Q 015087 146 RMGAGMAKFICKE---VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (413)
Q Consensus 146 ~m~~gm~~dl~~~---~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltNILRD~~ED~ 218 (413)
.|..|-..|+... -.|.++|..-..+=.|......+++-.. +|... .....++.++|.|+|+.+=+-|+.-|.
T Consensus 181 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 260 (324)
T 3uca_A 181 GMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNA 260 (324)
T ss_dssp THHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 4777888888622 5688888777655555555555544322 22211 122378889999999999777774332
Q ss_pred hhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 219 ~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
.+ ++|- .-+|+.++..+=.....+..-...+..+..+|.+.+..+++.
T Consensus 261 ~~------------~GK~--~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 261 KD------------LGKN--VHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp ------------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HH------------hCCC--cchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 21 1110 013444444444444445566677888888888888888754
No 17
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=91.29 E-value=1.4 Score=43.28 Aligned_cols=143 Identities=12% Similarity=0.085 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQK 207 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQl 207 (413)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|......+++-.. +|.... ....++.++|.|+|+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 218 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQI 218 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788898888862 25788888777766666665555554332 222111 123788999999999
Q ss_pred HHHHHhc-----------HhhhhhCCCCCccccHHHHHHcCCChh------hhhc-cc-CCHHHHHH---------HHHH
Q 015087 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE------DLKY-EE-NSDKAVQC---------LNDM 259 (413)
Q Consensus 208 tNILRD~-----------~ED~~~~~~GR~ylP~e~l~~~g~~~~------dl~~-~~-~~~~~~~~---------l~~l 259 (413)
.+=+-|+ +.|+. .|.+=||-=..-+.. +.+ ++.. +. ..+....+ +..-
T Consensus 219 ~DD~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a 294 (341)
T 3mzv_A 219 VDDLLDYGGKSAEIGKNTGDDFR---ERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEAT 294 (341)
T ss_dssp HHHHHHC----------CCHHHH---TTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHhccCChhhcCCCCCcccc---cCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHH
Confidence 9988887 46788 588888864322222 221 1111 11 12222222 2334
Q ss_pred HHHHHHHHHHHHHHHHhchhhh
Q 015087 260 VTNALMHVEDCLKYMSALRDHA 281 (413)
Q Consensus 260 v~~A~~hl~~a~~yl~~L~~~~ 281 (413)
...+..+..+|...+..+|+..
T Consensus 295 ~~~a~~~~~~A~~~L~~lp~~~ 316 (341)
T 3mzv_A 295 RLAAIGWTDTARKALAKLPDHP 316 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCCH
Confidence 4557778888888888887543
No 18
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=91.11 E-value=5.8 Score=38.78 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhHhHHHhhhh--c----cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC--CChhHHHHHHHHHHHH
Q 015087 137 QDAIEDITKRMGAGMAKFIC--K----EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQK 207 (413)
Q Consensus 137 ~~lI~di~~~m~~gm~~dl~--~----~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~--~~~~~~A~~mG~aLQl 207 (413)
.+++.+.+..|..|-..|+. . ...|.++|..-.++=.|....+.+++-.. +|... .....++.++|.|+|+
T Consensus 133 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi 212 (340)
T 2e8v_A 133 ITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQI 212 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 33444556667778888885 2 14689999887777666666555555432 22221 2234789999999999
Q ss_pred HHHHHhcH-----------hhhhhCCCCCccccH
Q 015087 208 TNIIRDYL-----------EDINEIPKCRMFWPR 230 (413)
Q Consensus 208 tNILRD~~-----------ED~~~~~~GR~ylP~ 230 (413)
.+=+-|+. .|+. .|.+-||-
T Consensus 213 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~ 243 (340)
T 2e8v_A 213 RDDYLNLKDFQMSSEKGFAEDIT---EGKLSFPI 243 (340)
T ss_dssp HHHHHHHHC-----CCCTTHHHH---TTCCCHHH
T ss_pred HHHHHhccCChhhhCCCchhhHh---cCCchHHH
Confidence 98888874 6777 58887876
No 19
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=91.08 E-value=3.8 Score=39.39 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=72.6
Q ss_pred HhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhccc--CCCC---CChhHHHHHHHHHHHHHHHHHhcHhh
Q 015087 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYLED 217 (413)
Q Consensus 145 ~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~--~~~~---~~~~~~A~~mG~aLQltNILRD~~ED 217 (413)
..|..|-..|+.. ...|.++|..-..+=.|......+++-... |... .....++.++|.|+|+.|=+-|+.-|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4677888888862 256888888877665555555555543221 1111 11236789999999999887777544
Q ss_pred hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015087 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 218 ~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
-.+ .|. | .-+|+.++..+=.....+..-...+..+..+|...+..++.
T Consensus 232 ~~~--~GK---~---------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TAT--LGK---R---------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHH--HSS---C---------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH--hCC---C---------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 321 122 1 01344444444334444455566677788888888877765
No 20
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=91.03 E-value=8.9 Score=37.88 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhHhHHHhhhhcc--------CCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCC---CChhHHHHHH
Q 015087 136 YQDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TED---LAPDSLSNSM 201 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~~--------~~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~-~~~---~~~~~~A~~m 201 (413)
..+++.+.+..|..|-..|+... -.|.++|..=..+=.|.. ....+.+-.. +| ... .....++.++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~l 249 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEM 249 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 45566677778888988888621 357888877666655554 3333332211 12 111 1123678999
Q ss_pred HHHHHHHHHHHhcH----------hhhhhCCCCCccccHH
Q 015087 202 GLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 231 (413)
Q Consensus 202 G~aLQltNILRD~~----------ED~~~~~~GR~ylP~e 231 (413)
|.|+|+.+=+-|+- .|+. .|.+-||.=
T Consensus 250 G~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l 286 (367)
T 1uby_A 250 GEYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLVV 286 (367)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHHH
Confidence 99999999888875 5677 688888863
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=91.03 E-value=2.3 Score=42.20 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKT 208 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQlt 208 (413)
...+++.+.+..|..|-..|+.. ...|.++|..-.++-.|......+++-.. +|... .....++.++|+|+|+.
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~ 239 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIV 239 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777888898888862 23677887766666666655555554322 22211 11237889999999999
Q ss_pred HHHHhc-----------HhhhhhCCCCCccccHHHHHHcCCCh--h---hhhc-ccCCHH-HHHH---------HHHHHH
Q 015087 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKL--E---DLKY-EENSDK-AVQC---------LNDMVT 261 (413)
Q Consensus 209 NILRD~-----------~ED~~~~~~GR~ylP~e~l~~~g~~~--~---dl~~-~~~~~~-~~~~---------l~~lv~ 261 (413)
|=+-|+ +.|+. .|.+-||-=..-+.. ++ + ++.. +..++. ..++ +..-..
T Consensus 240 DDilD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~ 315 (360)
T 3lmd_A 240 DDIIDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALD 315 (360)
T ss_dssp HHHHHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHH
Confidence 888777 46777 488888864333331 11 1 1111 222222 1111 333445
Q ss_pred HHHHHHHHHHHHHHhchhhh
Q 015087 262 NALMHVEDCLKYMSALRDHA 281 (413)
Q Consensus 262 ~A~~hl~~a~~yl~~L~~~~ 281 (413)
.+..+..+|...+..+|+..
T Consensus 316 ~a~~~~~~A~~~L~~lp~~~ 335 (360)
T 3lmd_A 316 EVYRYMDIANAELDRLPDST 335 (360)
T ss_dssp HHHHHHHHHHHHHTTSCCSH
T ss_pred HHHHHHHHHHHHHHhCCCcH
Confidence 56778888888888887643
No 22
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=90.91 E-value=1.7 Score=43.00 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhHhHHHhhhhcc---------------CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhH
Q 015087 136 YQDAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDS 196 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~~---------------~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~ 196 (413)
..+++.+.+..|..|-..|+... -.|.++|..-..+-.|....+.+++-.. +|.... ....
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~ 212 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWN 212 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455566677888988888632 3488888777766666665555554332 222111 1237
Q ss_pred HHHHHHHHHHHHHHHHhc-----------HhhhhhCCCCCc-cccHHHHHHcCCChh------hh-hcccCCHHHH----
Q 015087 197 LSNSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLE------DL-KYEENSDKAV---- 253 (413)
Q Consensus 197 ~A~~mG~aLQltNILRD~-----------~ED~~~~~~GR~-ylP~e~l~~~g~~~~------dl-~~~~~~~~~~---- 253 (413)
++.++|.|+|+.|=+-|+ +.|+. .|.+ =||-=..-+.. +++ ++ .++..++.-.
T Consensus 213 ~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~ 288 (358)
T 4dhd_A 213 FGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAV 288 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHH
Confidence 889999999999877776 47888 5888 78863322221 111 11 1122222212
Q ss_pred HH------HHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 254 QC------LNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 254 ~~------l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
+. +..-...+..+..+|.+.+..+|+.
T Consensus 289 ~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 289 ALLDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 11 1223455777888888888888754
No 23
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=90.37 E-value=15 Score=36.72 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhHhHHHhhhh-------------------c----c----CCCHHHHHHHHHhhhhHH-HHH---HHHHh
Q 015087 136 YQDAIEDITKRMGAGMAKFIC-------------------K----E----VESIDDYDEYCYYVAGLV-GLG---LSKLF 184 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~-------------------~----~----~~T~~dl~~YC~~VAG~V-G~l---l~~l~ 184 (413)
..+++.+.+..|..|-..|+. . . -.|.++|..-+.+=.|.. ..+ +..++
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 344566667778888888881 1 1 357788766555555543 222 22233
Q ss_pred cccCCCC--C-ChhHHHHHHHHHHHHHHHHHhc----------HhhhhhCCCCCccccHH
Q 015087 185 YASGTED--L-APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (413)
Q Consensus 185 ~~~~~~~--~-~~~~~A~~mG~aLQltNILRD~----------~ED~~~~~~GR~ylP~e 231 (413)
+....+. . ....++.++|+|+|+.+=+-|+ +.|+. .|.+=||-=
T Consensus 259 ag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l 315 (395)
T 2ihi_A 259 AGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLI 315 (395)
T ss_dssp TTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHHH
Confidence 3211111 1 1237889999999999988887 56888 688888863
No 24
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=90.15 E-value=11 Score=36.40 Aligned_cols=118 Identities=16% Similarity=0.032 Sum_probs=70.1
Q ss_pred hhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHHhcHhhhh
Q 015087 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDIN 219 (413)
Q Consensus 146 ~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQltNILRD~~ED~~ 219 (413)
.|..|-..|+. ..-.|.++|..-..+=.|......+++-.. +|.... ....++.++|.|+|+.+=+-|+.-|-.
T Consensus 156 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 235 (309)
T 3pde_A 156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPA 235 (309)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 56678888885 235688888877666666555555544322 222211 223789999999999987777754332
Q ss_pred hCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015087 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSAL 277 (413)
Q Consensus 220 ~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L 277 (413)
+ ++|- .-+|+.++..+=...-.+..--..+..++.+|...+..+
T Consensus 236 ~------------~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 236 E------------MGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp -----------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred H------------hCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 1 1221 014555555555555556666677778888888877774
No 25
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=90.14 E-value=9.5 Score=37.92 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=56.1
Q ss_pred HHHHHHHhhHhHHHhhhh---ccCCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHH
Q 015087 139 AIEDITKRMGAGMAKFIC---KEVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNI 210 (413)
Q Consensus 139 lI~di~~~m~~gm~~dl~---~~~~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltNI 210 (413)
++.+....|..|-..|+. +...|.++|..-..+=.|.. ....+++-.. +|... .....+..++|+|+|+.+=
T Consensus 179 ~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 179 AWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444567778888885 23468888877666555554 3333333211 12211 1223788999999999988
Q ss_pred HHhc-----------HhhhhhCCCCCccccHH
Q 015087 211 IRDY-----------LEDINEIPKCRMFWPRE 231 (413)
Q Consensus 211 LRD~-----------~ED~~~~~~GR~ylP~e 231 (413)
+-|+ +.|+. .|.+=||-=
T Consensus 259 iLd~~gd~~~~GK~~g~Dl~---egK~T~p~i 287 (380)
T 3lk5_A 259 LLGVFGDPAITGKPAGDDIR---EGKRTVLLA 287 (380)
T ss_dssp HHHHHSCHHHHSSCTTHHHH---TTCCCHHHH
T ss_pred HHhccCChhhhCCCchhhHh---cCCchHHHH
Confidence 8876 56888 588888753
No 26
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=90.06 E-value=2.8 Score=40.78 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred hhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHHhcHhhh
Q 015087 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLEDI 218 (413)
Q Consensus 146 ~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~~mG~aLQltNILRD~~ED~ 218 (413)
.|..|-..|+. ....|.++|..-..+=.|......+++-.. +|..+. ....++.++|+|+|+.+=+-|+.-|-
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 46778888886 235788888877765555555555554332 221121 12368899999999999888874443
Q ss_pred hhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 219 ~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
.+ .|. | .-+|+.++..+=...-.+..-...|..+..+|.+.+..+|+.
T Consensus 232 ~~--~GK---~---------~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 ET--LGK---T---------QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred Hh--hCC---C---------cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 21 122 1 013555555554455566677778888899999988888753
No 27
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=89.91 E-value=5.5 Score=38.61 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHH
Q 015087 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKT 208 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQlt 208 (413)
..+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|......+++-.. +|.... ....++.++|.|+|+.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 210 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQII 210 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667788898888862 25688888877777666666666655432 222111 1236889999999999
Q ss_pred HHHHhc-----------HhhhhhCCCCCccccH
Q 015087 209 NIIRDY-----------LEDINEIPKCRMFWPR 230 (413)
Q Consensus 209 NILRD~-----------~ED~~~~~~GR~ylP~ 230 (413)
|=+-|+ +.|+. .|.+=||-
T Consensus 211 DD~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~ 240 (325)
T 3aqb_B 211 DDILDYTSDEATLGKPVGSDIR---NGHITYPL 240 (325)
T ss_dssp HHHHHHHSCHHHHSSCTTHHHH---TTCCCHHH
T ss_pred HHHHhccCChhhcCCccchHhh---CCCccHHH
Confidence 887776 56777 58888886
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=89.66 E-value=4.4 Score=39.12 Aligned_cols=120 Identities=17% Similarity=0.068 Sum_probs=72.1
Q ss_pred hHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHHhcHhhhh
Q 015087 147 MGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLEDIN 219 (413)
Q Consensus 147 m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~~mG~aLQltNILRD~~ED~~ 219 (413)
|..|-..|+. ....|.++|..-+.+=.|......+++-.. +|..+. ....++.++|.|+|+.+=+-|+.-|-.
T Consensus 154 ~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~ 233 (304)
T 3lsn_A 154 MVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTA 233 (304)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 6778888885 235788888877766666555555554322 232121 223788999999999998888765543
Q ss_pred hCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 220 ~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
+ .|. | .-+|+.++..+=...-.+..--..+..+..+|...+..+|+.
T Consensus 234 ~--~GK---~---------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 234 T--LGK---R---------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp H--C------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred H--hCC---C---------cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 2 232 1 013455555554444456666777888888888888888753
No 29
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=89.66 E-value=3.7 Score=40.07 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=72.5
Q ss_pred HhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCCC---ChhHHHHHHHHHHHHHHHHHhcHhh
Q 015087 145 KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TEDL---APDSLSNSMGLFLQKTNIIRDYLED 217 (413)
Q Consensus 145 ~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~-~~~~---~~~~~A~~mG~aLQltNILRD~~ED 217 (413)
..|..|-..|+.. .-.|.++|..-.++=.|......+++-.. +| .... ....++.++|+|+|+.+=+-|+.-|
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3577788888862 35688998887766666666666555432 22 1111 1236889999999999987777544
Q ss_pred hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 218 ~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
..+ .|. | . -+|+.++..+=...-.+..-...|..++.+|...+..+|+.
T Consensus 238 ~~~--~GK---~------~---g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 TQT--LGK---T------R---GKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp -----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHH--hCC---C------c---cchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 321 122 0 1 13444455444444456666677888888888888888764
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=89.04 E-value=2.6 Score=41.31 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=68.5
Q ss_pred HhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHHhcHhhh
Q 015087 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 218 (413)
Q Consensus 145 ~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQltNILRD~~ED~ 218 (413)
..|..|-..|+. ..-.|.++|..-.++=.|......+++-.. +|.... ....++.++|.|+|+.+=+-|+.-|.
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 557778888885 235788898888777766665555554322 222211 22378999999999998888774433
Q ss_pred hhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015087 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 219 ~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
.+ .|. | . -+|+.++..+=.....+..-...+..+..+|.+.+..++.
T Consensus 272 ~~--~GK---~------~---g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 AT--MGK---A------T---GKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp ----------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HH--hCC---C------c---chHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 21 111 0 0 1244444433333334555566777778888887777764
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=89.03 E-value=8.5 Score=37.52 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 015087 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (413)
Q Consensus 137 ~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltN 209 (413)
.+++.+.+..|..|-..|+.. .-.|.++|..-.++=.|......+++-.. +|... .....++.++|.|+|+.|
T Consensus 139 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~D 218 (342)
T 1wy0_A 139 LEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWD 218 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788898888862 24588888877777666666666555322 22221 122378899999999998
Q ss_pred HHHhcH-----------hhhhhCCCCCccccHH
Q 015087 210 IIRDYL-----------EDINEIPKCRMFWPRE 231 (413)
Q Consensus 210 ILRD~~-----------ED~~~~~~GR~ylP~e 231 (413)
=+-|+. .|+. .|.+=||-=
T Consensus 219 D~lD~~~d~~~~GK~~g~Dl~---egK~Tlp~i 248 (342)
T 1wy0_A 219 DVLDLIADEKKLGKPVGSDIR---KGKKTLIVA 248 (342)
T ss_dssp HHHHHHSCHHHHTSCSCHHHH---HTCCCHHHH
T ss_pred HHHhccCChhhhCCCchhHHh---CCCCcHHHH
Confidence 887764 6777 488888863
No 32
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=88.94 E-value=1.4 Score=42.43 Aligned_cols=122 Identities=14% Similarity=0.010 Sum_probs=64.8
Q ss_pred HhhHhHHHhhhhc----cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHHhcHhhhh
Q 015087 145 KRMGAGMAKFICK----EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDIN 219 (413)
Q Consensus 145 ~~m~~gm~~dl~~----~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~~~~~~A~~mG~aLQltNILRD~~ED~~ 219 (413)
..|..|-..|+.. .-.|.++|..-..+=.|....+.+++-.. +|........++.++|.|+|+.|=+-|+.-|..
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4577788888852 35688888887766666655555544322 122222344889999999999876555533221
Q ss_pred hCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 220 EIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 220 ~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
.++|- .-+|+.++..+=...-.+..-...+..++.+|...+..+++.
T Consensus 227 ------------~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 227 ------------AAGKR--LGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp ----------------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred ------------HhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11110 012344444333333334445566777788888877788764
No 33
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=88.74 E-value=12 Score=35.91 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHH
Q 015087 136 YQDAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTN 209 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltN 209 (413)
.-+++.+....|..|-..|+.. ...|.++|..-.++-.|......+++-.. +|... .....++.++|.|+|+.|
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~D 207 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVD 207 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666787888888852 24577777666666666655555554322 22211 122378899999999999
Q ss_pred HHHhcHhh-----hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 210 IIRDYLED-----INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 210 ILRD~~ED-----~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
=+-|+.-| .. .|.+-||.= . +. +..+ ...+..-...|..+..+|...+..+|+.
T Consensus 208 DilD~~~~~~gkd~~---~gk~Tlp~l-~---al--------~~~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 208 DILEFLEVVEGKESK---FTSETLPHI-Y---MK--------STSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHHHHHC----------CCHHHH-H---TT--------TSCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHhcCCccCCCcc---cCcccHHHH-H---HH--------hcCc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88888654 43 355556642 1 11 1111 1235555667788888888888888754
No 34
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=87.94 E-value=8.3 Score=37.92 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHH
Q 015087 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTN 209 (413)
Q Consensus 137 ~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQltN 209 (413)
.+++.+.+..|..|-..|+.. .-.|.++|..=.++=.|......+++-.. +|.... ....+..++|+|+|+.+
T Consensus 145 ~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~D 224 (352)
T 3nf2_A 145 TRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVD 224 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777788888852 35688998876766666665665554322 222211 12378999999999998
Q ss_pred HHHhc-----------HhhhhhCCCCCccccHHHHHHcCCC-hh---hhhc-c-------cCCHH-H---HHH------H
Q 015087 210 IIRDY-----------LEDINEIPKCRMFWPREIWSKYVNK-LE---DLKY-E-------ENSDK-A---VQC------L 256 (413)
Q Consensus 210 ILRD~-----------~ED~~~~~~GR~ylP~e~l~~~g~~-~~---dl~~-~-------~~~~~-~---~~~------l 256 (413)
=+-|+ +.|+. .|.+-||-=..-+.+.. .. ++.. + ..++. . .++ +
T Consensus 225 D~ld~~gd~~~~GK~~g~Dl~---egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~ 301 (352)
T 3nf2_A 225 DLLGIWGDPDATGKQTWSDLR---QRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGR 301 (352)
T ss_dssp HHHHHHCCHHHHSSCTTHHHH---TTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhccCChhhhCCCcCcccc---cCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcH
Confidence 88776 47888 58888886333222211 01 1111 1 11222 2 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchh
Q 015087 257 NDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 257 ~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
..-...+..+..+|...+..+|+
T Consensus 302 ~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 302 EWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 33334567778888888888875
No 35
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=87.47 E-value=8 Score=37.96 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQK 207 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQl 207 (413)
...+++.+.+..|..|-..|+.. .-.|.++|..-.++-.|......+++-.. +|... .....++.++|.|+|+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 230 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQL 230 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677788898888862 25788888877777766666666555332 22211 1123788999999999
Q ss_pred HHHHHhcH-----------hhhhhCCCCCccccHHHHHHcCCChh-h----hh-cc----cCCHHHHHH------HHHHH
Q 015087 208 TNIIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKLE-D----LK-YE----ENSDKAVQC------LNDMV 260 (413)
Q Consensus 208 tNILRD~~-----------ED~~~~~~GR~ylP~e~l~~~g~~~~-d----l~-~~----~~~~~~~~~------l~~lv 260 (413)
.+=+-|+. .|+. .|.+=||-=..-+.+.+.+ + +. ++ +.-+.+++. +..-.
T Consensus 231 ~DD~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~ 307 (345)
T 3oyr_A 231 ADDALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATL 307 (345)
T ss_dssp HHHHTTC----------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 99888863 6777 5888888643333222111 1 11 11 111223332 23445
Q ss_pred HHHHHHHHHHHHHHHhchhh
Q 015087 261 TNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 261 ~~A~~hl~~a~~yl~~L~~~ 280 (413)
..+..+..+|.+.+..+|+.
T Consensus 308 ~~a~~~~~~A~~~L~~lp~~ 327 (345)
T 3oyr_A 308 DLAADYADKAKAALAMFPAN 327 (345)
T ss_dssp HHHHHHHHHHHHTTTTSCSS
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 55677788888877777754
No 36
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=87.44 E-value=6.9 Score=38.19 Aligned_cols=143 Identities=14% Similarity=0.027 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQK 207 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQl 207 (413)
...+.+.+.+..|..|-..|+.. .-.|.++|..-+.+-.|....+.+++-.. +|.... ....++.++|.|+|+
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 222 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQM 222 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777787777752 35688887766666666665555554332 222111 123688899999999
Q ss_pred HHHHHhc-----------HhhhhhCCCCCccccHHHHHHcCC-Chhhhh--cccCCHHHHHHH----------HHHHHHH
Q 015087 208 TNIIRDY-----------LEDINEIPKCRMFWPREIWSKYVN-KLEDLK--YEENSDKAVQCL----------NDMVTNA 263 (413)
Q Consensus 208 tNILRD~-----------~ED~~~~~~GR~ylP~e~l~~~g~-~~~dl~--~~~~~~~~~~~l----------~~lv~~A 263 (413)
.+=+-|+ +.|+. .|.+=||-=..-+... ...++. .+..++.-.+-+ ..-...+
T Consensus 223 ~DD~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~ 299 (334)
T 3pko_A 223 LDDILDYAGDPKRTQKPVLEDLR---SGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLA 299 (334)
T ss_dssp HHHHHHHCSCTTSCCHHHHHHHH---TTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHhccCChhhcCCCCCCccc---cCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHH
Confidence 9877776 47888 5888888632221110 011111 112222222222 2233456
Q ss_pred HHHHHHHHHHHHhchhh
Q 015087 264 LMHVEDCLKYMSALRDH 280 (413)
Q Consensus 264 ~~hl~~a~~yl~~L~~~ 280 (413)
..+..+|...+..+|+.
T Consensus 300 ~~~~~~A~~~L~~lp~~ 316 (334)
T 3pko_A 300 QDYTDRALTLIQQLPVG 316 (334)
T ss_dssp HHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 77777778777777754
No 37
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=87.43 E-value=26 Score=35.34 Aligned_cols=198 Identities=13% Similarity=-0.028 Sum_probs=104.1
Q ss_pred hhhhhHHHHHHHHHHHhhhh-ccCCCCCccchHHHHHHHHHHHcccccccccCCC------cchHHHhhHHHHHHHHhhc
Q 015087 60 TDLRNAVCIFYLVLRALDTV-EDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK------EYKVLMDQFHHVSTAFLEL 132 (413)
Q Consensus 60 ~~lR~av~alYaf~R~lD~I-~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~~------~~~~ll~~~~~v~~~f~~l 132 (413)
.+.-..++-+..+.-.+||. .|+.....+....++...+..+..-.-.. .|.+ .+.++...|..+..++...
T Consensus 173 ~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~-~g~p~~~~~~~~dp~~~al~d~~~~l~~~ 251 (433)
T 3v1v_A 173 VDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTA-EYTPTWQASLAADAPRRAYDSAMGYFVRA 251 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCT-TTHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhccc-CCCCccccccCCchHHHHHHHHHHHHHhh
Confidence 45566777888888999999 68743222222334444443332100000 1211 1224466788887777543
Q ss_pred c-HHHHHHHHHHHHhhHhHHHhhhh----ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-------ChhHHHHH
Q 015087 133 G-KGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-------APDSLSNS 200 (413)
Q Consensus 133 ~-~~~~~lI~di~~~m~~gm~~dl~----~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~-------~~~~~A~~ 200 (413)
. +...+-+.+-++++..++..... ..++|++||..+-..+++.....+...+. |.+-. ....+-+.
T Consensus 252 a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~--g~~lp~~v~~~p~~~~L~~~ 329 (433)
T 3v1v_A 252 ATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVG--GYELPADLHARPDMQRVIAL 329 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHH--TCCCCHHHHTSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHc--CCCCCHHHHhCchHHHHHHH
Confidence 2 22222222333444445554432 45899999999987763322122222221 22111 11245667
Q ss_pred HHHHHHHHHHHHhcHhhhhhCCCC-Cc-cccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015087 201 MGLFLQKTNIIRDYLEDINEIPKC-RM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (413)
Q Consensus 201 mG~aLQltNILRD~~ED~~~~~~G-R~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~ 272 (413)
.+...-++|=|-.+..+.. +| .+ =...=++.++|++.++ +.+-+.+++.+....+.+..+
T Consensus 330 ~~~i~rL~NDI~Sy~kE~~---~gg~~~N~V~~~mke~g~S~ee---------A~~~v~~~i~~~~~~F~~~~~ 391 (433)
T 3v1v_A 330 AGNATTIVNDLYSYTKELN---SPGRHLNLPVVIAEREQLCERD---------AYLKAVEVHNELQHSFEAAAA 391 (433)
T ss_dssp HHHHHHHHHHHHSHHHHTT---SSSCCCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHh---cCCCCCcHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777 53 33 2233456778887654 444556666666665555554
No 38
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=85.93 E-value=21 Score=34.81 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhc---cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQK 207 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~---~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQl 207 (413)
...+++.+.+..|..|-..|+.. .-.|.++|..=.++=.|......+++-.. +|.... ....++.++|.|+|+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi 232 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQL 232 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888898888862 24577777665555555544555444322 222111 123678999999999
Q ss_pred HHHHHhcH-----------hhhhhCCCCCccccHHHHHHcCCChhhhhccc--CCHH---HHH------HHHHHHHHHHH
Q 015087 208 TNIIRDYL-----------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEE--NSDK---AVQ------CLNDMVTNALM 265 (413)
Q Consensus 208 tNILRD~~-----------ED~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~--~~~~---~~~------~l~~lv~~A~~ 265 (413)
.+=+-|+. .|+. .|.+=||-=..-+.......+.... ..+. +++ .+......+..
T Consensus 233 ~DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~ 309 (348)
T 3apz_A 233 IDDILDFTGTSASLGKGSLSDIR---HGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAME 309 (348)
T ss_dssp HHHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhccCChhhcCCcchhhHh---CCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 99888874 5677 5888888643222222222222111 1111 122 12233344566
Q ss_pred HHHHHHHHHHhchh
Q 015087 266 HVEDCLKYMSALRD 279 (413)
Q Consensus 266 hl~~a~~yl~~L~~ 279 (413)
+..+|...+..+|.
T Consensus 310 ~~~~A~~~L~~l~~ 323 (348)
T 3apz_A 310 HANLAAAAIGSLPE 323 (348)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCC
Confidence 67777777777654
No 39
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=85.38 E-value=30 Score=34.00 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=111.8
Q ss_pred ChhhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccC----CCcchHHHhhHHHHHHHHhhc-c
Q 015087 59 GTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCG----TKEYKVLMDQFHHVSTAFLEL-G 133 (413)
Q Consensus 59 p~~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G----~~~~~~ll~~~~~v~~~f~~l-~ 133 (413)
+.+.-..++-+..+.-.+||+-|+.... .....++.+.+.+... +. | .+...++...|..+..++... .
T Consensus 102 s~erL~l~a~~~~w~f~~DD~~D~~~~g--~~~~~~~~~~~~l~~~---l~-~~~~~p~~~~p~~~al~dl~~~~~~~~~ 175 (382)
T 3kb9_A 102 PDEVLQAIADYSAWFFVWDDRHDRDIVH--GRAGAWRRLRGLLHTA---LD-SPGDHLHHEDTLVAGFADSVRRLYAFLP 175 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH---HH-SCGGGTTCSSHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccc--cCHHHHHHHHHHHHHH---hc-CCCCCCCCCChHHHHHHHHHHHHHccCC
Confidence 3444446677888889999999863211 0112333333333320 11 2 112345667788887777643 3
Q ss_pred HHHHHHHHHHHHhhHhHHHhhhh----ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-------ChhHHHHHHH
Q 015087 134 KGYQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-------APDSLSNSMG 202 (413)
Q Consensus 134 ~~~~~lI~di~~~m~~gm~~dl~----~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~-------~~~~~A~~mG 202 (413)
+....-+.+.++++..++..... ..++|++||..+-..+.|.--.+..-.++. |.+-. ....+-+..+
T Consensus 176 ~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~ 254 (382)
T 3kb9_A 176 ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQ 254 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHH
Confidence 33333333444555556655543 358999999999877777532222222221 22111 1124566778
Q ss_pred HHHHHHHHHHhcHhhhhhCCCCCcc-ccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015087 203 LFLQKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMS 275 (413)
Q Consensus 203 ~aLQltNILRD~~ED~~~~~~GR~y-lP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~ 275 (413)
...-++|=|-.+..... +|.+- .-.=.+..+|++.++ +.+-+.+++.++...+.++..-+.
T Consensus 255 ~i~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L~ 316 (382)
T 3kb9_A 255 EFAAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDAL 316 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888887777 56531 122245677877654 666777888887777766655444
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=82.84 E-value=40 Score=33.48 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhHhHHHhhhhcc-------------------CCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCCC--
Q 015087 136 YQDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTEDL-- 192 (413)
Q Consensus 136 ~~~lI~di~~~m~~gm~~dl~~~-------------------~~T~~dl~~YC~~VAG~V-G~ll~~l~~~-~~~~~~-- 192 (413)
..+++.+.+..|..|-..|+... -.|.++|..-+++=.|.. ....+++-.. +|..+.
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~ 259 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 34455666777888988888531 257788876666655554 3333332111 122111
Q ss_pred --ChhHHHHHHHHHHHHHHHHHhcH----------hhhhhCCCCCccccHH
Q 015087 193 --APDSLSNSMGLFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 231 (413)
Q Consensus 193 --~~~~~A~~mG~aLQltNILRD~~----------ED~~~~~~GR~ylP~e 231 (413)
....++.++|+|+|+.+=+-|+- .|+. .|.+=||-=
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pvi 307 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLAV 307 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHHH
Confidence 12378999999999999888874 5888 688888753
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=81.43 E-value=37 Score=32.22 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhccCCCHHHHHHHHHhhhhHHHHHHHHHhcccC-CCCC--ChhHHHHHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASG-TEDL--APDSLSNSMGLFLQKTNII 211 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~-~~~~--~~~~~A~~mG~aLQltNIL 211 (413)
...+++.+.+..|..|-..|+.. .++|....++=.|......+++-...+ .+.. ....++.++|.|+|+.+=+
T Consensus 135 ~~~~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDi 210 (289)
T 2azj_A 135 DALNTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDF 210 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556667788888888763 556666666655555555544432212 1111 1237899999999999988
Q ss_pred HhcHh----hhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015087 212 RDYLE----DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (413)
Q Consensus 212 RD~~E----D~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~ 279 (413)
-|+.- |+. .|..-||.=. .+.|. + +.+ -..+..+..+|.+.+..+|.
T Consensus 211 lD~~~~~K~dl~---~gk~Tlp~l~-~~~g~-----------~---~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 211 VDYKTKKVEEID---GSAKQLFKYY-REGKL-----------E---EYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp HHHTTSCTTTCC---TTGGGGHHHH-TTTCH-----------H---HHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcCCCChhhh---cCcccHHHHH-HcCCH-----------H---HHH---HHHHHHHHHHHHHHHHhCCC
Confidence 88853 444 3556677532 11111 1 111 13678888888888888876
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=77.39 E-value=22 Score=33.89 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=68.7
Q ss_pred HHhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHHhcHhh
Q 015087 144 TKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLED 217 (413)
Q Consensus 144 ~~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~---~~~~~A~~mG~aLQltNILRD~~ED 217 (413)
...|..|-..|+. ..-.|.++|..-..+=.|......+++-.. +|..+. ....++.++|.|+|+.+=+-|+.-|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3457778778885 235688888877766666655555553221 222111 2237889999999999988888766
Q ss_pred hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015087 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (413)
Q Consensus 218 ~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~~~ 280 (413)
..+ .|.-. . . | +++.+=.....+..--..+..++.+|...+..++..
T Consensus 224 ~~~--~GK~~---~------~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQ--SGKPT---N------N---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ------------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHH--HCCcc---c------h---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 542 33321 1 0 1 333444444455555567777888888888777654
No 43
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=74.00 E-value=87 Score=32.48 Aligned_cols=188 Identities=10% Similarity=0.075 Sum_probs=95.5
Q ss_pred hhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHccccccccc-CCCcc--hHHHhhHHHHHHHHhhc--cH-H
Q 015087 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC-GTKEY--KVLMDQFHHVSTAFLEL--GK-G 135 (413)
Q Consensus 62 lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~-G~~~~--~~ll~~~~~v~~~f~~l--~~-~ 135 (413)
.|-.++-+-++.-.+||+-|.... ...|+.|-+.+.. |.... +.-++ +.+...+..+..++..- +. .
T Consensus 287 ~Rl~~aK~~~l~tviDD~yD~~gt-----~eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~ 359 (549)
T 1n1b_A 287 QRKMAATIIVLATVIDDIYDVYGT-----LDELELFTDTFKR--WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHG 359 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHH--TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHh--cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566666777778999887532 2366778888853 53220 11122 34444455555444311 11 0
Q ss_pred --HHHHHHHHHHhhHhHHHhhhh----ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-CCh--------hHHHHH
Q 015087 136 --YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-LAP--------DSLSNS 200 (413)
Q Consensus 136 --~~~lI~di~~~m~~gm~~dl~----~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~-~~~--------~~~A~~ 200 (413)
....+.+..+++..++..... ..++|++||......+.|.--..+...++. |..- ... ..+...
T Consensus 360 ~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~-g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 360 FFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF-ANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS-TTCCCCHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHHhhhcccHHHHHH
Confidence 111222333344445543332 348999999998877766544444444433 2211 111 134445
Q ss_pred HHHHHHHHHHHHhcHhhhhhCCCCCc--cccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 015087 201 MGLFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (413)
Q Consensus 201 mG~aLQltNILRD~~ED~~~~~~GR~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a 270 (413)
.+...-+.|=|..+..+.. +|.+ .+ .=.|.++|++.++ +.+-+++++.++...+.+.
T Consensus 439 ~~~i~RL~NDi~S~~~E~~---rG~v~n~V-~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e 497 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFELA---RGDVPKTI-QCYMKETNASEEE---------AVEHVKFLIREAWKDMNTA 497 (549)
T ss_dssp HHHHHHHHHHHC------------CCCCHH-HHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhc---cCCccHHH-HHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 5555555565566665555 5653 11 1246677886554 6677889999988877654
No 44
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=71.32 E-value=30 Score=33.26 Aligned_cols=118 Identities=19% Similarity=0.055 Sum_probs=68.1
Q ss_pred HhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHHhcHhh
Q 015087 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLED 217 (413)
Q Consensus 145 ~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~~----~~~~~A~~mG~aLQltNILRD~~ED 217 (413)
..|..|-..|+. ..-.|.++|..-..+=.|......+++-.. +|.... ....++.++|.|+|+.+=+-|+.-|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 357778888886 335688888877666555554444443321 122221 1237899999999999988888766
Q ss_pred hhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015087 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (413)
Q Consensus 218 ~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~ 278 (413)
..+ .|. -+ .+ .++..+=...-.+..--..+..++.+|...+..++
T Consensus 239 ~~~--~GK----------~~---g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 EEE--SGK----------TT---HL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp ----------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hHH--HCc----------cc---cc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 542 232 11 11 33444444445555666777778888888777743
No 45
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=66.32 E-value=1e+02 Score=30.25 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhHhHHHhhhhcc----CCCH-HHHHHHHHhhhhHH-HHHHHH---HhcccCCCC---CChhHHHHHHHHH
Q 015087 137 QDAIEDITKRMGAGMAKFICKE----VESI-DDYDEYCYYVAGLV-GLGLSK---LFYASGTED---LAPDSLSNSMGLF 204 (413)
Q Consensus 137 ~~lI~di~~~m~~gm~~dl~~~----~~T~-~dl~~YC~~VAG~V-G~ll~~---l~~~~~~~~---~~~~~~A~~mG~a 204 (413)
.+++.+.+..|..|-..|+... -.+. ++|..=..+=.|.. ..+.++ +++....+. .....+..++|.|
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~a 249 (368)
T 2her_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEF 249 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 3455566677888988888632 2344 55544344433333 222222 222211121 1234789999999
Q ss_pred HHHHHHHHhc------HhhhhhCCCCCccccHHHHHHcCCChhh---h---hcccCCHHHHHHHH------HHHHHHHHH
Q 015087 205 LQKTNIIRDY------LEDINEIPKCRMFWPREIWSKYVNKLED---L---KYEENSDKAVQCLN------DMVTNALMH 266 (413)
Q Consensus 205 LQltNILRD~------~ED~~~~~~GR~ylP~e~l~~~g~~~~d---l---~~~~~~~~~~~~l~------~lv~~A~~h 266 (413)
+|+.+=+-|+ +.|+. .|.+=||-=. .-...++++ | ..... +.+.++++ .....+..+
T Consensus 250 FQI~DD~LD~~~~GK~g~Dl~---egK~T~pvi~-al~~a~~~~r~~L~~~~~~~~-~~v~~li~~~g~~~~~~~~~~~~ 324 (368)
T 2her_A 250 YQVHNDVSDYLFNDSNADDIC---RFKLTWPLQK-SFEIADEEMKLKISENYGKNS-SLVKDCYNLLKINEHYLEYQRNA 324 (368)
T ss_dssp HHHHHHHHHHHSCCSSSCTTT---TTCCCHHHHS-STTTCCHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCChHh---CCcccHHHHH-HHHhCCHHHHHHHHHHhCCcH-HHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999988887 47998 6998888521 111112221 1 11111 44444433 233345666
Q ss_pred HHHHHHHHHhchhh
Q 015087 267 VEDCLKYMSALRDH 280 (413)
Q Consensus 267 l~~a~~yl~~L~~~ 280 (413)
+.+|...+..+|..
T Consensus 325 ~~~A~~~L~~lp~~ 338 (368)
T 2her_A 325 LDYLIKLVKDITDD 338 (368)
T ss_dssp HHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCc
Confidence 77777777777654
No 46
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=58.64 E-value=1e+02 Score=30.15 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHHHHHhhHhHHHhhhh-c---c-CCCHHHHHHHH-HhhhhHHHHHHHH---HhcccCCCC---CChhHHHHHHHHHHH
Q 015087 139 AIEDITKRMGAGMAKFIC-K---E-VESIDDYDEYC-YYVAGLVGLGLSK---LFYASGTED---LAPDSLSNSMGLFLQ 206 (413)
Q Consensus 139 lI~di~~~m~~gm~~dl~-~---~-~~T~~dl~~YC-~~VAG~VG~ll~~---l~~~~~~~~---~~~~~~A~~mG~aLQ 206 (413)
++.+.+..|..|-..|+. . . -.|.++|..-. +-+|+......+. +++..+... .....++..+|.|+|
T Consensus 172 ~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2q58_A 172 IYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence 334445556668777874 1 1 23555554443 3445543333322 222111111 123478999999999
Q ss_pred HHHHHHhc------HhhhhhCCCCCccccH
Q 015087 207 KTNIIRDY------LEDINEIPKCRMFWPR 230 (413)
Q Consensus 207 ltNILRD~------~ED~~~~~~GR~ylP~ 230 (413)
+.+=+-|+ +.|+. .|.+=||-
T Consensus 252 I~DDiLD~~~gK~~g~Dl~---egK~T~p~ 278 (368)
T 2q58_A 252 VHNDVSDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHHHHHHSCCCSSCTTT---SCCCCHHH
T ss_pred HHHHHhhcccCCCCCchHh---cCCcHHHH
Confidence 99988884 58998 69998885
No 47
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=58.22 E-value=1e+02 Score=29.17 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred hhHhHHHhhhhcc-----CCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHHhcHh
Q 015087 146 RMGAGMAKFICKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRDYLE 216 (413)
Q Consensus 146 ~m~~gm~~dl~~~-----~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQltNILRD~~E 216 (413)
.|..|-..|+... -.|.++|..-..+=.|......+++-.. +|... .....++.++|.|+|+.+=+-|+..
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4777888888522 2355566555544445444444444322 22211 1123788999999999987777754
Q ss_pred hhhhCCCCCccccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015087 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (413)
Q Consensus 217 D~~~~~~GR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~~L~ 278 (413)
|. ..-+|.= -.+..-...+..+..+|.+.+..++
T Consensus 241 ~~------K~T~p~l----------------------~gle~a~~~a~~~~~~A~~~L~~l~ 274 (293)
T 2j1p_A 241 SS------KLTYPKL----------------------MGLEKSREFAEKLNTEARDQLLGFD 274 (293)
T ss_dssp --------CCCHHHH----------------------HHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred Cc------cccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43 2334421 1233444556667777777777775
No 48
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=57.98 E-value=1.2e+02 Score=28.40 Aligned_cols=195 Identities=8% Similarity=-0.148 Sum_probs=111.7
Q ss_pred hhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccCCC--cchHHHhhHHHHHHHHhhc-cHHHH
Q 015087 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK--EYKVLMDQFHHVSTAFLEL-GKGYQ 137 (413)
Q Consensus 61 ~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~~--~~~~ll~~~~~v~~~f~~l-~~~~~ 137 (413)
+....++-+..+.-.+||+-|.... .....++.|.+.+.. |. . |.. ...++...+..+..++... .+...
T Consensus 64 ~rl~~~ak~~~~~~~~DD~~D~~~~---~~~ee~~~~~~~l~~--~~-~-~~~p~~~~~~~~~l~d~~~~~~~~~~~~~~ 136 (337)
T 1ps1_A 64 ADLDLGVDLMSWFFLFDDLFDGPRG---ENPEDTKQLTDQVAA--AL-D-GPLPDTAPPIAHGFADIWRRTCEGMTPAWC 136 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSGGG---GCHHHHHHHHHHHHG--GG-T-SCCCTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCcCC---CCHHHHHHHHHHHHH--Hc-C-CCCCCCCChHHHHHHHHHHHHhccCCHHHH
Confidence 3333667788888889999887521 123356667777764 32 2 321 1334555666666665543 23333
Q ss_pred HHHHHHHHhhHhHHHhhhh----ccCC-CHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-------CChhHHHHHHHHHH
Q 015087 138 DAIEDITKRMGAGMAKFIC----KEVE-SIDDYDEYCYYVAGLVGLGLSKLFYASGTED-------LAPDSLSNSMGLFL 205 (413)
Q Consensus 138 ~lI~di~~~m~~gm~~dl~----~~~~-T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~-------~~~~~~A~~mG~aL 205 (413)
..+.+.+..+..++..... ..++ |++||..+-..+.|.--.+.+-.++. |..- +....+-+..+...
T Consensus 137 ~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~ 215 (337)
T 1ps1_A 137 ARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAG-RFEVPHRVFDSAVMSAMLQIAVDVN 215 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHH
Confidence 3334445555556655432 3488 99999888877776533333333322 2211 11124666778888
Q ss_pred HHHHHHHhcHhhhhhCCCCCcc-ccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015087 206 QKTNIIRDYLEDINEIPKCRMF-WPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMS 275 (413)
Q Consensus 206 QltNILRD~~ED~~~~~~GR~y-lP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~yl~ 275 (413)
-++|=|-.+..+.. +|-+- .-.=.+.++|++.++ +.+-+.+++.++...+.+...-+.
T Consensus 216 rL~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~~lp 274 (337)
T 1ps1_A 216 LLLNDIASLEKEEA---RGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLESCLP 274 (337)
T ss_dssp HHHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888887 57632 223356777876554 666777888888777766664433
No 49
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=56.27 E-value=1.6e+02 Score=29.02 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhc----------HhhhhhCCCCCccccHH
Q 015087 196 SLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (413)
Q Consensus 196 ~~A~~mG~aLQltNILRD~----------~ED~~~~~~GR~ylP~e 231 (413)
.++..+|+|+|+.+=+-|+ +.|+. .|.+=||-=
T Consensus 273 ~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~p~i 315 (395)
T 3mav_A 273 DISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLI 315 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---cCCchHHHH
Confidence 6888999999999988886 46788 588888864
No 50
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=52.22 E-value=41 Score=31.65 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=44.4
Q ss_pred HHHHHHHH-----HhhHhHHHhhhhc--cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHH
Q 015087 137 QDAIEDIT-----KRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFL 205 (413)
Q Consensus 137 ~~lI~di~-----~~m~~gm~~dl~~--~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aL 205 (413)
.+++.++. ..|..|-..|+.. ...|.++|..-+.+=.|....+.+++-.. +|... .....++.++|.|+
T Consensus 136 ~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aF 215 (274)
T 3kra_B 136 LRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLR 215 (274)
T ss_dssp HHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555 3467788888862 26788888776666555555555554322 22221 12237889999999
Q ss_pred HHHH
Q 015087 206 QKTN 209 (413)
Q Consensus 206 QltN 209 (413)
|+.+
T Consensus 216 QI~D 219 (274)
T 3kra_B 216 GMME 219 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9954
No 51
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=46.68 E-value=2.2e+02 Score=27.89 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=91.5
Q ss_pred hcChhhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccCCCcchHHHhhHHHHHHHHhhccHH-
Q 015087 57 QLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKG- 135 (413)
Q Consensus 57 ~Lp~~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~~~~~~ll~~~~~v~~~f~~l~~~- 135 (413)
..+.+....++.++.++=.+||+.|+.. ..+..|.+.+.. |.+...+++..|..+..+....-++
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~-------~~l~~~~~~ll~-------G~~~~~Pl~~al~dl~~rl~~~~~p~ 145 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY-------PTMVNYFDDLQA-------GREQAHPWWALVNEHFPNVLRHFGPF 145 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH-------HHHTTHHHHHHH-------TCCCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH-------HHHHHHHHHHhc-------CCCCCChHHHHHHHHHHHHHHhcCHH
Confidence 4578889999999999999999988642 356667776643 4444567778888887776654333
Q ss_pred -HHHHHHHHHHhhHhHHHhhhh--ccCCCHHHHHHHHHhhhhHHHHHHHHHhc-ccCC-CCCC---hhHHHHHHHHHHHH
Q 015087 136 -YQDAIEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFY-ASGT-EDLA---PDSLSNSMGLFLQK 207 (413)
Q Consensus 136 -~~~lI~di~~~m~~gm~~dl~--~~~~T~~dl~~YC~~VAG~VG~ll~~l~~-~~~~-~~~~---~~~~A~~mG~aLQl 207 (413)
...++..+.. -.+|...... ..+++.++|-.|-+...|. ++......- .... +... ...+-..|....-.
T Consensus 146 ~~~rf~~s~~~-~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~ 223 (374)
T 1yyq_A 146 CSLNLIRSTLD-FFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVW 223 (374)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchhhcchhHHHHHHHHHHHHHh
Confidence 2333332222 2223322221 2356777787777777775 444433332 2111 1111 11334444443333
Q ss_pred HHHHHhcHhhhh-hCCCCCccccHHHHHHcCCChhh
Q 015087 208 TNIIRDYLEDIN-EIPKCRMFWPREIWSKYVNKLED 242 (413)
Q Consensus 208 tNILRD~~ED~~-~~~~GR~ylP~e~l~~~g~~~~d 242 (413)
+|=|=.+..... + ..+.=+..-+...+|.+..+
T Consensus 224 ~NDIlSf~KE~~~~--Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 224 VNDLMSFYKEFDDE--RDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHHHHTTCS--SCCCCHHHHHHHHHTCCHHH
T ss_pred hhhhhccchhhhcc--CCccchhhhehhcCCCCHHH
Confidence 343333333332 1 22444556667777877654
No 52
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=38.25 E-value=2.3e+02 Score=25.82 Aligned_cols=188 Identities=13% Similarity=0.005 Sum_probs=100.1
Q ss_pred hhhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHcccccccccCCC-cchHHHhhHHHHHHHHhhccHHHHHH
Q 015087 61 DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK-EYKVLMDQFHHVSTAFLELGKGYQDA 139 (413)
Q Consensus 61 ~lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~~-~~~~ll~~~~~v~~~f~~l~~~~~~l 139 (413)
+....++-+..+.-.+||+-|+.+ .+ .++.+.+.+.. |.-....+ ...++...+..+..++....+.+
T Consensus 60 ~rl~~~~k~~~~~~~~DD~~D~~~--~~----e~~~~~~~~~~--~~~~~~lp~~~~~~~~~l~d~~~~~~~~~~~~--- 128 (300)
T 1di1_A 60 DRIHFACRLLTVLFLIDDVLEHMS--FA----DGEAYNNRLIP--ISRGDVLPDRTKPEEFILYDLWESMRAHDAEL--- 128 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHSC--HH----HHHHHHHHHHH--HHHTSSCCCTTCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhccccCC--HH----HHHHHHHHHHH--HccCCCCCCCccHHHHHHHHHHHHHHhhChHH---
Confidence 333466788889999999999854 22 12233333322 11000111 12344555555555554322222
Q ss_pred HHHHHHhhHhHHHh--hhh-ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-----ChhHHHHHHHHHHHHHHHH
Q 015087 140 IEDITKRMGAGMAK--FIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-----APDSLSNSMGLFLQKTNII 211 (413)
Q Consensus 140 I~di~~~m~~gm~~--dl~-~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~-----~~~~~A~~mG~aLQltNIL 211 (413)
..++.+.+..++.. ... ..++|++||..+-..+.|.--...+-.++. |..-+ ....+.+..+...-++|=|
T Consensus 129 ~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl 207 (300)
T 1di1_A 129 ANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDI 207 (300)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22333333345432 111 358999999998888777432222223322 22111 1235666777777788877
Q ss_pred HhcHhhhhhCCCCC--------c-cccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015087 212 RDYLEDINEIPKCR--------M-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (413)
Q Consensus 212 RD~~ED~~~~~~GR--------~-ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a~~ 272 (413)
-.+..... +|- + =.-.=.+..+|++.++ +.+.+.+++.++...+....+
T Consensus 208 ~S~~kE~~---~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~~~ 265 (300)
T 1di1_A 208 YSYDKEEE---ASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVA 265 (300)
T ss_dssp HHTTTTCC---C----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 77776666 454 1 1223356677776553 667788888888777766654
No 53
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=31.97 E-value=1.6e+02 Score=27.77 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhHhHHHhhhhccCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC--CChhHHHHHHHHHHHHHHHH
Q 015087 135 GYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQKTNII 211 (413)
Q Consensus 135 ~~~~lI~di~~~m~~gm~~dl~~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~--~~~~~~A~~mG~aLQltNIL 211 (413)
...+++.+.+..|..|-..|+...... ..-+-+|+. ..+.+++-.. +|... .....++.++|.|+|+.|=+
T Consensus 133 ~~~~~ls~~~~~~~~GQ~lDl~~~~~~-----~i~~KTg~L-f~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDi 206 (285)
T 4fp4_A 133 DVVTYLADVAQRLSVGQALDLEGERDK-----AAEFKTAPL-IEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDY 206 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHTHHH-HHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccc-----hhhcCcHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777888888888522111 233333333 3333332211 12211 12237889999999987755
Q ss_pred HhcH
Q 015087 212 RDYL 215 (413)
Q Consensus 212 RD~~ 215 (413)
-|+.
T Consensus 207 LD~~ 210 (285)
T 4fp4_A 207 SDEN 210 (285)
T ss_dssp ----
T ss_pred hccC
Confidence 5553
No 54
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=30.53 E-value=4.7e+02 Score=27.02 Aligned_cols=186 Identities=11% Similarity=0.083 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHccccccccc--CCCcc-hHHHhhHHHHHHHHhh--ccHH-
Q 015087 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC--GTKEY-KVLMDQFHHVSTAFLE--LGKG- 135 (413)
Q Consensus 62 lR~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~--G~~~~-~~ll~~~~~v~~~f~~--l~~~- 135 (413)
.|-.+.-.-.+.-.+||+=|.-. -...|+.|-+.+.. |.... .-|.+ +.+..++..+..++.. .+..
T Consensus 290 ~R~~~aK~~~l~tviDD~yD~yg-----t~eEl~~ft~ai~R--WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g 362 (555)
T 3n0f_A 290 CRNSVAKMFSFVTIIDDIYDVYG-----TLDELELFTDAVER--WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKG 362 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH--TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccccC-----CHHHHHHHHHHHHh--cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36666677778888888888643 23577788888764 64331 11111 2334444444444321 1111
Q ss_pred --HHHHHHHHHHhhHhHHHhhhh----ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-C-------hhHHHHHH
Q 015087 136 --YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-A-------PDSLSNSM 201 (413)
Q Consensus 136 --~~~lI~di~~~m~~gm~~dl~----~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~-~-------~~~~A~~m 201 (413)
....+.+..+++..|+..... .-++|++||.....-+.|.--..++..++. |..-+ . ...+.+..
T Consensus 363 ~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m-g~~lt~e~~e~~~~~p~i~~~~ 441 (555)
T 3n0f_A 363 ENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV-VQNIKKEEIENLQKYHDIISRP 441 (555)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH-CSSCCHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc-CCCCCHHHHHhcccchHHHHHH
Confidence 011222333444446655443 348999999999888777533333334432 21111 0 11344555
Q ss_pred HHHHHHHHHHHhcHhhhhhCCCCCccccHH---HHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 015087 202 GLFLQKTNIIRDYLEDINEIPKCRMFWPRE---IWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (413)
Q Consensus 202 G~aLQltNILRD~~ED~~~~~~GR~ylP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~ 269 (413)
+...-+.|=|..+..... +|-+ +.- .|.++|++.++ +.+-++.++.++...+.+
T Consensus 442 ~~i~RL~NDi~S~~~E~~---rG~v--as~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 442 SHIFRLCNDLASASAEIA---RGET--ANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHHHHHHHHHHHHHHT---TTCC--CSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhhhhh---cCCc--chHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 556666666666666565 5654 222 45667887654 666788888888775543
No 55
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=29.33 E-value=1.1e+02 Score=28.72 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=38.0
Q ss_pred HHHHHHHH-----HhhHhHHHhhhhc-cCCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC---CChhHHHHHHHHHHH
Q 015087 137 QDAIEDIT-----KRMGAGMAKFICK-EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQ 206 (413)
Q Consensus 137 ~~lI~di~-----~~m~~gm~~dl~~-~~~T~~dl~~YC~~VAG~VG~ll~~l~~~-~~~~~---~~~~~~A~~mG~aLQ 206 (413)
.+++.++. ..|..|...|+.. .-.+.+.++.-+.+=.|......+++-.. +|... .....++.++|.|+|
T Consensus 138 ~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQ 217 (273)
T 3qkc_B 138 LRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQG 217 (273)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555554 3457788888862 22344444433233334444444444221 22211 112368889999999
Q ss_pred HHH
Q 015087 207 KTN 209 (413)
Q Consensus 207 ltN 209 (413)
+.+
T Consensus 218 I~D 220 (273)
T 3qkc_B 218 LLG 220 (273)
T ss_dssp HHT
T ss_pred HHH
Confidence 853
No 56
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=24.47 E-value=6e+02 Score=26.23 Aligned_cols=187 Identities=8% Similarity=0.061 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHhhhhccCCCCCccchHHHHHHHHHHHccccccccc-CC-Cc-chHHHhhHHHHHHHHhhc--cH-H-
Q 015087 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC-GT-KE-YKVLMDQFHHVSTAFLEL--GK-G- 135 (413)
Q Consensus 63 R~av~alYaf~R~lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~-G~-~~-~~~ll~~~~~v~~~f~~l--~~-~- 135 (413)
|-.+.-+-++.-.+||+-|.-. .. ..|+.|-+.+.. |.... +. |. -+++..++..+..++..- +. .
T Consensus 309 Rl~~aK~~~litviDD~fD~yg-T~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~ 381 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYG-TL----EELQLFTTAIQR--WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF 381 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CH----HHHHHHHHHHHH--TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CH----HHHHHHHHHHHH--cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4445556677777999988653 22 347777777763 53220 11 21 234444555555444321 11 0
Q ss_pred -HHHHHHHHHHhhHhHHHhhhh----ccCCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCCC--------hhHHHHHHH
Q 015087 136 -YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDLA--------PDSLSNSMG 202 (413)
Q Consensus 136 -~~~lI~di~~~m~~gm~~dl~----~~~~T~~dl~~YC~~VAG~VG~ll~~l~~~~~~~~~~--------~~~~A~~mG 202 (413)
....+.+..+++..++..... ..++|++||......+.|.--..+...++. |..-+. ...+....+
T Consensus 382 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~-g~~lt~e~~e~l~~~p~i~~~~~ 460 (569)
T 2j5c_A 382 DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRL-TDSIEEEAAESMHKYHDIVRASC 460 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHS-CSSCCHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHc-CCCCCHHHHHHhhccHHHHHHHH
Confidence 111222333344445544332 348999999888877766543334444433 221110 012333444
Q ss_pred HHHHHHHHHHhcHhhhhhCCCCCc--cccHHHHHHcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 015087 203 LFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDC 270 (413)
Q Consensus 203 ~aLQltNILRD~~ED~~~~~~GR~--ylP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~hl~~a 270 (413)
...-+.|=|..+..+.. +|-+ .+ .=.|.++|++. +.+.+-++.++.++...+.+.
T Consensus 461 ~i~RL~NDI~S~~~E~~---rG~v~s~V-~cyMke~g~s~---------eeA~~~i~~~ie~~wk~ln~e 517 (569)
T 2j5c_A 461 TILRLADDMGTSLDEVE---RGDVPKSV-QCYMNEKNASE---------EEAREHVRSLIDQTWKMMNKE 517 (569)
T ss_dssp HHHHHHHHHHC-------------CCHH-HHC------CC---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhcc---cCCccHHH-HHHHHHcCCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444454444444444 4442 11 11244556544 446777889999988876653
No 57
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.16 E-value=32 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCCccccHHHHHHcCCChhhh
Q 015087 223 KCRMFWPREIWSKYVNKLEDL 243 (413)
Q Consensus 223 ~GR~ylP~e~l~~~g~~~~dl 243 (413)
.||+.+|+|+.++.|+.+.|-
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCE
T ss_pred CCEEEeCHHHHHHcCCCCCCE
Confidence 699999999999999987764
No 58
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=21.75 E-value=1.3e+02 Score=23.27 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=24.9
Q ss_pred hhhhccCCCCCccchHHHHHHHHHHHcccccccccCCCcchHHHhhHHHHHHHHhhcc
Q 015087 76 LDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELG 133 (413)
Q Consensus 76 lD~I~Dd~~~~~~~k~~~L~~~~~~l~~~~w~f~~G~~~~~~ll~~~~~v~~~f~~l~ 133 (413)
+|+|.+.-..+...-...|..=.+.|. .+|.+|.++++|...+.+|....
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~--------~~PsnPa~LAeyQ~kl~eysl~r 61 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLA--------KNPSNPQLLAEYQSKLSEYTLYR 61 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 667766554332222223333333333 35678889999999999997654
Done!