BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015088
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A YQLAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + + +++S+ +L+ ++
Sbjct: 64 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
Y+ DFP F + YG PS GL K+ H G DPD P
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
L L+E++ G +NG + +CMY+ T DE F+ID +VV+A GFS
Sbjct: 293 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
GHGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 205/394 (52%), Gaps = 31/394 (7%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A YQLAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + + +++S+ +L+ ++
Sbjct: 64 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-------RPWGPGL 297
Y+ DFP F + YG PS GL+ G DPD P
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLMLGYHTFGQKIDPDTINREFGVYPEDESN 293
Query: 298 LLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSG 356
L L+E++ G +NG + +CMY+ T DE F+ID +VV+A GFSG
Sbjct: 294 LRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSG 344
Query: 357 HGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
HGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 345 HGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A YQLAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + + +++S+ +L+ ++
Sbjct: 64 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
Y+ DFP F + YG PS GL ++ H G DPD P
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-RLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
L L+E++ G +NG + +CMY+ T DE F+ID +VV+A GFS
Sbjct: 293 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
GHGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A YQLAK+G KTLL++ FD H GS HG+++ IR Y E Y P
Sbjct: 5 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTKIIRHAYGEGREYVP 64
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + + +++S+ +L+ ++
Sbjct: 65 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 124
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 125 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 183
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 184 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 234
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
Y+ DFP F + YG PS GL K+ H G DPD P
Sbjct: 235 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 293
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
L L+E++ G +NG + +CMY+ T DE F+ID +VV+A GFS
Sbjct: 294 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 344
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
GHGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 345 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 378
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 210/391 (53%), Gaps = 25/391 (6%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A Y LAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQV 125
L + LW + + E +K++ + GP + S + + +S+ H++ + +Q+
Sbjct: 64 FALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQL 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
++++G +E+P+N+ + GV+ + ++ LA +GA + V+ +D
Sbjct: 124 TDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTEDL 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VT+ T+ G + K VV+ GAW KL+ ++ +E+P+Q V ++ E +EA
Sbjct: 183 ----VTIKTAKG-SYTANKLVVSMGAWNSKLLSKLD-VEIPLQPYRQVVGFF---ECDEA 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPD--RRPWGPGLLLDS 301
Y+ +P+F + YG PS GL KI H G DPD R +G ++
Sbjct: 234 KYSNNAHYPAFMVEVENGIYYGFPSFGGSGL-KIGYHSYGQQIDPDTINREFGAYPEDEA 292
Query: 302 -LKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
L+++++ G +NG + +CMY+ TPDE FVID L ++ +V +A GFSGHGF
Sbjct: 293 NLRKFLEQYMPG---ANGELKKGAVCMYTKTPDEHFVID-LHPKYS-NVAIAAGFSGHGF 347
Query: 360 KMAPAVGRILADLVLSGEAQGVELQHFRISR 390
K + VG LA L +G+ + ++ F ++R
Sbjct: 348 KFSSVVGETLAQLATTGKTEH-DISIFSLNR 377
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 204/394 (51%), Gaps = 31/394 (7%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG MG +A YQLAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + + +++S+ +L+ ++
Sbjct: 64 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-------RPWGPGL 297
Y+ DFP F + YG PS GL G DPD P
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYNTFGQKIDPDTINREFGVYPEDESN 293
Query: 298 LLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSG 356
L L+E++ G +NG + +CMY+ T DE F+ID +VV+A GFSG
Sbjct: 294 LRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSG 344
Query: 357 HGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
HGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 345 HGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 33/395 (8%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
FDVIVVGAG G +A YQLAK+G KTLL++ FD H GS HG++R IR Y E Y P
Sbjct: 4 FDVIVVGAGSXGXAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67 MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
+ L S LW + + E +K++ K GP E+ + + +++S+ +L+ ++
Sbjct: 64 LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETXEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
+++ G I +PEN+ + GV+ + ++ LA GA + + V+ D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
VK + T+NG + K +V+ GAW KL+ ++ L++P+Q V ++ E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSXGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
Y+ DFP F + YG PS GL K+ H G DPD P
Sbjct: 234 KYSNDIDFPGFXVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
L L+E+ G +NG + +C Y+ T DE F+ID +VV+A GFS
Sbjct: 293 NLRAFLEEYXPG-------ANGELKRGAVCXYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
GHGFK + VG +L+ L L+G+ + ++ F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 198/407 (48%), Gaps = 57/407 (14%)
Query: 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYH 65
K+D+I++G+G +G++A Y + G L+ + H GS HG++R IR Y E + Y
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYV 61
Query: 66 PMVLESCLLWEQ-AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
P+VL + +LW++ ++ ++ ++ ++GP+++ L +V S + + + LD +
Sbjct: 62 PLVLRAQMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQG 121
Query: 125 VLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD 184
++ ++ I +P+N++G+ G ++ A+ + LA + G N V + D
Sbjct: 122 IMARWP-EIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD 180
Query: 185 AVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
GVT+ T++GE + KK +V AG WV L+ ELP+Q V +++ +
Sbjct: 181 ----GVTIETADGE-YQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQA----D 226
Query: 245 ADYAVGGDFPSFAS---YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS 301
Y+V FP+F GD Y YG P+ +KI H G G ++ S
Sbjct: 227 GRYSVKNKFPAFTGELPNGDQY-YGFPAEN--DALKIGKHNG------------GQVIHS 271
Query: 302 LKEWIQGRFAGRVDSNGPVATQL----------------CMYSITPDEDFVIDFLGGEFG 345
E + FA V S+G A C Y +PDEDF+ID L G
Sbjct: 272 ADERVP--FA-EVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGH-- 326
Query: 346 EDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFK 392
++ ++ G SGHGFK A +G I AD ++ +L FR+SRF+
Sbjct: 327 DNTLLITGLSGHGFKFASVLGEIAADFAQDKKSD-FDLTPFRLSRFQ 372
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 163/391 (41%), Gaps = 43/391 (10%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
E +DV+VVG G +G + A+Q+A+RG + L+LE+ F + G + G R R Y ++
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
+ LE+ LW +S ++ + G ++ + A K SV ++ L
Sbjct: 63 RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLK 181
+ ++ R +P ++ G GG I ++ TLA GA LR V ++
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 VKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-IK 240
D GV+V T G + K V+ G + L++ + G L E + +R
Sbjct: 182 DAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGNEADYAVGGDFPS------FASYG-DPYIYGT-----PSLEYPGLIKIALHGGYPCDP 288
EA + P+ F +G +P+ G P E L + G
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFFGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVA--- 292
Query: 289 DRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGG-----E 343
DRR +D L W++ VD + PV T C+ + D + FLG
Sbjct: 293 DRRQ------MDRLSGWLRDHLPT-VDPD-PVRTSTCLAVLPTDPERQF-FLGTARDLMT 343
Query: 344 FGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374
GE +VV G +G FK P GRI ADL +
Sbjct: 344 HGEKLVVYG--AGWAFKFVPLFGRICADLAV 372
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 163/391 (41%), Gaps = 43/391 (10%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
E +DV+VVG G +G + A+Q+A+RG + L+LE+ F + G + G R R Y ++
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
+ LE+ LW +S ++ + G ++ + A K SV ++ L
Sbjct: 63 RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLK 181
+ ++ R +P ++ G GG I ++ TLA GA LR V ++
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 VKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-IK 240
D GV+V T G + K V+ G + L++ + G L E + +R
Sbjct: 182 DAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGNEADYAVGGDFPS------FASYG-DPYIYGT-----PSLEYPGLIKIALHGGYPCDP 288
EA + P+ F +G +P+ G P E L + G
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVA--- 292
Query: 289 DRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGG-----E 343
DRR +D L W++ VD + PV T C+ + D + FLG
Sbjct: 293 DRRQ------MDRLSGWLRDHLPT-VDPD-PVRTSTCLAVLPTDPERQF-FLGTARDLMT 343
Query: 344 FGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374
GE +VV G +G FK P GRI ADL +
Sbjct: 344 HGEKLVVYG--AGWAFKFVPLFGRICADLAV 372
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 163/392 (41%), Gaps = 44/392 (11%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
E +DV+VVG G +G + A+Q+A+RG + L+LE+ F + G + G R R Y ++
Sbjct: 1 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 60
Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQF-----DMGPSENKSLRSVIASCRKNSVPHQVL 120
+ LE+ LW +S ++ + D+ +E + + K SV ++ L
Sbjct: 61 RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAXMXDKLSVRYEWL 120
Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
+ ++ R +P ++ G GG I ++ TLA GA LR V ++
Sbjct: 121 KATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELV 179
Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-I 239
D GV+V T G + K V+ G + L++ + G L E + +R
Sbjct: 180 PDAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEXAIAAYRQA 233
Query: 240 KEGNEADYAVGGDFPS------FASYG-DPYIYGT-----PSLEYPGLIKIALHGGYPCD 287
EA + P+ F +G +P+ G P E L + G
Sbjct: 234 TPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVA-- 291
Query: 288 PDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLG-----G 342
DRR D L W++ VD + PV T C+ + D + FLG
Sbjct: 292 -DRRQ------XDRLSGWLRDHLP-TVDPD-PVRTSTCLAVLPTDPERQF-FLGTARDLX 341
Query: 343 EFGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374
GE +VV G +G FK P GRI ADL +
Sbjct: 342 THGEKLVVYG--AGWAFKFVPLFGRICADLAV 371
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 152/363 (41%), Gaps = 31/363 (8%)
Query: 23 AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI 82
A++LAKRG++ ++E+ F+ GS+ IR + ++ ++ S LW++ E
Sbjct: 21 AHELAKRGEEVTVIEK-RFIGS-GSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEY 78
Query: 83 GYKVYFKAHQFDMGPSEN-KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVG 141
G+ + F + E K+ + I K VP +++ + E ++I E
Sbjct: 79 GFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKE-IVPLLDISEVIAA 137
Query: 142 VATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFW 201
G P +A + F A + GA L + EVK L + +KG V +N
Sbjct: 138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKG----VKTNKGIIK 193
Query: 202 GKKCVVTAGAWVGKLVKRITGL--ELPIQAVE-TTVCYWRIKEGNEADYAVGGDFPSFAS 258
V AW L+ + G+ ++PI+ + V IK G + SF
Sbjct: 194 TGIVVNATNAW-ANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVI-----SF-K 246
Query: 259 YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKE--WIQGRFAGRVDS 316
YG Y+ T G I + Y P + L+E + + + +
Sbjct: 247 YGHAYLTQTFHGGIIGGIGYEIGPTYDLTPT---------YEFLREVSYYFTKIIPALKN 297
Query: 317 NGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG 376
+ T Y+ TPD + I + E D +A GFSGHGF MAPAVG ++A+L+ G
Sbjct: 298 LLILRTWAGYYAKTPDSNPAIGRI--EELNDYYIAAGFSGHGFMMAPAVGEMVAELITKG 355
Query: 377 EAQ 379
+ +
Sbjct: 356 KTK 358
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 28/241 (11%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED 62
P + +D I+VG G G + AY LAK G + + + +L G+ + IR+ Y D
Sbjct: 18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL-AGGNXARNTTIIRSNYLWD 76
Query: 63 YYHPMVLESCLLWEQAQSEIGYKVYFK-------AHQFDMGPSENKSLRSVIASCRKNSV 115
+ +S LWEQ ++ Y F AH +S+R V A+ + N V
Sbjct: 77 ESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLG---DVRESVRRVEAN-KLNGV 132
Query: 116 PHQVLDCRQVLE-----KYSGRIEIPENWVGVAT--ELGGVIKPTKAVSMFQTLAIKNGA 168
+ LD QV E S I P V AT G+ K F A + G
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYP---VXGATWQPRAGIAKHDHVAWAFARKANEXGV 189
Query: 169 VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228
+ N EV +K + V G V T+ G GK V AGA ++ G ELPIQ
Sbjct: 190 DIIQNCEVTGFIKDGEKVTG---VKTTRGTIHAGK--VALAGAGHSSVLAEXAGFELPIQ 244
Query: 229 A 229
+
Sbjct: 245 S 245
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 100/242 (41%), Gaps = 30/242 (12%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED 62
P + +D I+VG G G + AY LAK G + + + +L G+ + IR+ Y D
Sbjct: 18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL-AGGNMARNTTIIRSNYLWD 76
Query: 63 YYHPMVLESCLLWEQAQSEIGYKVYFK-------AHQFDMGPSENKSLRSVIASCRKNSV 115
+ +S LWEQ ++ Y F AH +S+R V A+ + N V
Sbjct: 77 ESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLG---DVRESVRRVEAN-KLNGV 132
Query: 116 PHQVLDCRQVLE-----KYSGRIEIP---ENWVGVATELGGVIKPTKAVSMFQTLAIKNG 167
+ LD QV E S I P W A G+ K F A + G
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRA----GIAKHDHVAWAFARKANEMG 188
Query: 168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227
+ N EV +K + V G V T+ G GK V AGA ++ + G ELPI
Sbjct: 189 VDIIQNCEVTGFIKDGEKVTG---VKTTRGTIHAGK--VALAGAGHSSVLAEMAGFELPI 243
Query: 228 QA 229
Q+
Sbjct: 244 QS 245
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
K+DV+++G G GSSAAYQL++RG K LL++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS 37
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45
E FD+IV+G G GS+ A +A RG + LLLE+ F H+
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ 45
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39
+KFDVIV+GAG G AA + A+ G KT L+E++
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKY 35
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
G FDV+V+G GI G SAA L + G L+LE D
Sbjct: 11 GHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARD 46
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53
V+VVGAG+ G SAAY LA G K +LE + R +H S+
Sbjct: 36 VVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSK 79
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI 55
+D IVVG G G AA L G+K LLLE + L R S ESR +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR-ESRNV 48
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI 55
+D IVVG G G AA L G+K LLLE + L R S ESR +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR-ESRNV 48
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 348 VVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
++ A G +G +APA G +++DL+++ E L FRI R
Sbjct: 334 ILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR 376
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 348 VVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
++ A G +G +APA G +++DL+++ E L FRI R
Sbjct: 334 ILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR 376
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 348 VVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
++ A G +G +APA G +++DL+++ E L FRI R
Sbjct: 342 ILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR 384
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
FD ++VGAG GS A +LA GQ+ L++++
Sbjct: 30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
FDV+V+G GI G SAA L + G L+LE D
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARD 35
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
FDV+V+G GI G SAA L + G L+LE D
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARD 35
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39
+KFDV+V+GAG G AA + A+ G KT +E++
Sbjct: 2 QKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKY 35
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
V++VGAG+ G SAAY LA G + +LE
Sbjct: 49 VVIVGAGMSGLSAAYVLANAGHQVTVLE 76
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
+DVIV+G G G +A L G KTLLLE D + R S
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
+DVIV+G G G +A L G KTLLLE D + R S
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
KFDVI++G G SAA QL R +K +LL +R +SH
Sbjct: 2 KFDVIIIGGSYAGLSAALQLG-RARKNILLVDAGERRNRFASH 43
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
+DVIV+G G G +A L G KTLLLE D + R S
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
PGEKFDVI+VG G AA A+ KTL++
Sbjct: 12 PGEKFDVIIVGLGPAAYGAALYSARYMLKTLVI 44
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase Mutant C147a
Length = 323
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
PGEKFDVI+VG G AA A+ KTL++
Sbjct: 12 PGEKFDVIIVGLGPAAYGAALYSARYMLKTLVI 44
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
+D I+VGAG G AA +L++ G+K LLLE+
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
V++VGAG+ G SAAY LA G + +LE
Sbjct: 36 VVIVGAGMAGLSAAYVLAGAGHQVTVLE 63
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
+D I+VGAG G AA +L++ G+K LLLE+
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
G FDV+V+G GI G +AA L++ L+LE D
Sbjct: 19 GHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARD 54
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
+ DV+VVGAG+ G S A LA++G + L++E+
Sbjct: 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
+D I+VG+G+ G+ A +L K +K L++E+
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEK 32
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
P E+ DV+VVGAG G A Y+L + G+ ++E
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIE 46
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
P E+ DV+VVGAG G A Y+L + G+ ++E
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIE 46
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
P E+ DV+VVGAG G A Y+L + G+ ++E
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIE 46
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
P E+ DV+VVGAG G A Y+L + G+ ++E
Sbjct: 13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIE 46
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH---P 66
V+VVGAG+ G SAAY L+ G + +LE + + G RT R ED+Y P
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASE------RAGGRVRTYRND-KEDWYANLGP 88
Query: 67 MVL 69
M L
Sbjct: 89 MRL 91
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
+DVIVVG G G SAA LA+ G K L+L+
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
F + FDVI++G G G+ AA A+ GQ+TLLL
Sbjct: 28 FYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 61
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
M +P + FDVI++G G G+ AA A+ GQ+TLLL
Sbjct: 23 MFYP-DPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 57
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
M +P + FDVI++G G G+ AA A+ GQ+TLLL
Sbjct: 21 MFYP-DPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 55
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPED 62
D IV+GAG++G + A LA G + L+ E + + G+S S I A YP D
Sbjct: 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGI-GTGTSSRNSEVIHAGIYYPAD 60
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS----HGESRTIRAT 58
P +K VI++GAGI G AA L + G Q L+LE D + R + G I A+
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Query: 59 YPED-YYHPMVLESCLL 74
+ +D +P+ LE L
Sbjct: 65 WHQDTLTNPLFLEEAQL 81
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
EK DV+V+GAG G+ AA + K G K ++E+ F
Sbjct: 4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF 39
>pdb|3DJD|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJD|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJE|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
pdb|3DJE|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
Length = 438
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 323 QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILAD 371
++C + T + +F+ID +V+ G SG GFK P++G ++ D
Sbjct: 333 RICWCADTANREFLIDRHPQY--HSLVLGCGASGRGFKYLPSIGNLIVD 379
>pdb|2QX0|A Chain A, Crystal Structure Of Yersinia Pestis Hppk (Ternary
Complex)
pdb|2QX0|B Chain B, Crystal Structure Of Yersinia Pestis Hppk (Ternary
Complex)
Length = 159
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 95 MGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENW 139
+GP + + + + + P Q+LD Q +E+ GR+ + W
Sbjct: 46 LGPQDQPDFLNAVVALDTSLPPEQLLDHTQAIERNQGRVRKEQRW 90
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
+ F GE +DVI++G G+ + L+ G+K L+L++
Sbjct: 14 LYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDR 51
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
DV++ G GI G+ AY L ++G + +++EQ
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS----HGESRTIRAT 58
P +K VI++GAGI G AA L + G Q L+LE D + R + G I A+
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Query: 59 YPED-YYHPMVLESCLL 74
+ D +P+ LE L
Sbjct: 65 WHHDTLTNPLFLEEAQL 81
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
+++VGAG G+ QLA++G + +++Q D H G + ++R Y P +
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD---HIGGNSYDARDSETNVMVHVYGPHIF 62
Query: 70 ES 71
+
Sbjct: 63 HT 64
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS----HGESRTIRAT 58
P +K VI++GAGI G AA L + G Q L+LE D + R + G I A+
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Query: 59 YPED-YYHPMVLESCLL 74
+ D +P+ LE L
Sbjct: 65 WHHDTLTNPLFLEEAQL 81
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS----HGESRTIRAT 58
P +K VI++GAGI G AA L + G Q L+LE D + R + G I A+
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Query: 59 YPED-YYHPMVLESCLL 74
+ D +P+ LE L
Sbjct: 65 WHHDTLTNPLFLEEAQL 81
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
+DVIVVGAG G AA +A+ G LL+
Sbjct: 22 YDVIVVGAGHAGCEAALAVARGGLHCLLI 50
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
+++VGAG G+ QLA++G + +++Q D H G + ++R Y P +
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD---HIGGNSYDARDSETNVMVHVYGPHIF 62
Query: 70 ES 71
+
Sbjct: 63 HT 64
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
+++VGAG G+ QLA++G + +++Q D H G + ++R Y P +
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD---HIGGNSYDARDSETNVMVHVYGPHIF 62
Query: 70 ES 71
+
Sbjct: 63 HT 64
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS----HGESRTIRAT 58
P +K VI++GAGI G AA L + G Q L+LE D + R + G I A+
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Query: 59 YPED-YYHPMVLESCLL 74
+ D +P+ LE L
Sbjct: 65 WHHDTLTNPLFLEEAQL 81
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
P + DV +VGAGI G +AA L K G ++E D
Sbjct: 2 PTLQRDVAIVGAGISGLAAATALRKAGLSVAVIEARD 38
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
DV++VGAG G +AA +L K G +LE D
Sbjct: 9 DVVIVGAGPSGLTAARELKKAGLSVAVLEARD 40
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 281 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 159 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 159 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2VYC|A Chain A, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|B Chain B, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|C Chain C, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|D Chain D, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|E Chain E, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|F Chain F, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|G Chain G, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|H Chain H, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|I Chain I, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|J Chain J, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
Length = 755
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 106 VIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVA 143
V+ +C + V + + + +LEK S R+ E W G A
Sbjct: 317 VVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
VI++G+G+ G +AA QL G LLE D
Sbjct: 111 VIIIGSGVSGLAAARQLQSFGMDVTLLEARD 141
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQF 39
ME + V ++GAG +G+SAA+ +A R + +L++ F
Sbjct: 1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF 41
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
G FD ++VG G G++ A +LA+ T+L+
Sbjct: 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLI 35
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLL 36
VIVVGAG+ G SAA +L++ G LL+
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLL 36
VIVVGAG+ G SAA +L++ G LL+
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLI 33
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 9 DVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ 38
DV+VVGAG G SAAY+++K + ++EQ
Sbjct: 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 9 DVIVVGAGIMGSSAAYQLAKR 29
DVI+VGAG G SAAY +AK
Sbjct: 67 DVIIVGAGSSGLSAAYVIAKN 87
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
+V VVG GI G + A+ L RG +LLE
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLL 36
V+VVGAG MG + A L RG + +L+
Sbjct: 170 VLVVGAGEMGKTVAKSLVDRGVRAVLV 196
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
+V+V+G+G +G AA AK G+K +++ D
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 182
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
P E V+VVGAG G +A+ K G +L+++ F
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 155
>pdb|3DF7|A Chain A, Crystal Structure Of A Putative Atp-Grasp Superfamily
Protein From Archaeoglobus Fulgidus
Length = 305
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 364 AVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDY 402
A G +ADL+ GE + V Q R S+ E P +V DY
Sbjct: 259 AYGASVADLLAGGEVKHVRRQXVRKSKSAEKPYVSVGDY 297
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH---RGSSH 49
D +V+GAGI G+S Y L+ G+ +L + +H R ++H
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAH 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,829,473
Number of Sequences: 62578
Number of extensions: 626364
Number of successful extensions: 1845
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 218
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)