Query 015088
Match_columns 413
No_of_seqs 267 out of 2877
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01377 soxA_mon sarcosine o 100.0 1E-48 2.2E-53 368.2 44.6 375 8-396 1-379 (380)
2 KOG2820 FAD-dependent oxidored 100.0 8.2E-49 1.8E-53 333.8 31.8 387 3-395 3-398 (399)
3 PRK11259 solA N-methyltryptoph 100.0 9.1E-46 2E-50 347.7 42.4 368 7-393 3-376 (376)
4 TIGR01373 soxB sarcosine oxida 100.0 4.8E-45 1E-49 345.6 39.8 368 5-398 28-406 (407)
5 PRK00711 D-amino acid dehydrog 100.0 4.5E-43 9.8E-48 333.6 35.3 358 9-391 2-416 (416)
6 PRK12409 D-amino acid dehydrog 100.0 9.4E-40 2E-44 309.8 34.4 348 8-378 2-408 (410)
7 PF01266 DAO: FAD dependent ox 100.0 7.3E-41 1.6E-45 312.8 25.7 342 9-372 1-358 (358)
8 PRK01747 mnmC bifunctional tRN 100.0 4.4E-40 9.6E-45 327.8 30.4 359 7-400 260-659 (662)
9 TIGR03329 Phn_aa_oxid putative 100.0 1.5E-39 3.3E-44 311.3 32.2 350 5-377 22-395 (460)
10 COG0665 DadA Glycine/D-amino a 100.0 3.2E-38 6.9E-43 297.9 36.5 367 6-394 3-384 (387)
11 KOG2844 Dimethylglycine dehydr 100.0 8E-38 1.7E-42 287.9 30.3 370 6-395 38-419 (856)
12 KOG2853 Possible oxidoreductas 100.0 1.9E-37 4.1E-42 264.4 28.9 378 6-400 85-506 (509)
13 TIGR03364 HpnW_proposed FAD de 100.0 1.4E-36 2.9E-41 284.0 34.1 335 8-367 1-364 (365)
14 TIGR03197 MnmC_Cterm tRNA U-34 100.0 1.6E-36 3.5E-41 284.5 28.3 336 22-392 1-380 (381)
15 TIGR02352 thiamin_ThiO glycine 100.0 6.3E-35 1.4E-39 270.3 30.4 324 24-376 1-336 (337)
16 PRK11728 hydroxyglutarate oxid 100.0 4.9E-33 1.1E-37 261.9 33.3 345 7-373 2-393 (393)
17 PRK11101 glpA sn-glycerol-3-ph 100.0 2E-30 4.4E-35 251.9 35.6 338 6-376 5-370 (546)
18 KOG2852 Possible oxidoreductas 100.0 9.1E-30 2E-34 212.7 20.6 350 5-393 8-380 (380)
19 PRK13369 glycerol-3-phosphate 100.0 3.5E-28 7.6E-33 234.9 32.0 347 4-376 3-377 (502)
20 PRK12266 glpD glycerol-3-phosp 100.0 1.2E-27 2.5E-32 230.9 35.5 347 1-375 1-377 (508)
21 COG0579 Predicted dehydrogenas 100.0 1.6E-27 3.5E-32 218.0 31.9 351 7-375 3-374 (429)
22 PLN02464 glycerol-3-phosphate 100.0 2E-27 4.4E-32 233.4 33.1 350 5-375 69-453 (627)
23 COG0578 GlpA Glycerol-3-phosph 99.9 3.2E-24 6.9E-29 200.2 32.4 344 5-375 10-385 (532)
24 TIGR03377 glycerol3P_GlpA glyc 99.9 2.8E-24 6E-29 208.9 31.4 322 23-375 1-346 (516)
25 PTZ00383 malate:quinone oxidor 99.9 2.3E-23 4.9E-28 198.1 30.6 228 5-238 43-299 (497)
26 TIGR01320 mal_quin_oxido malat 99.9 3.3E-23 7.1E-28 197.8 31.6 227 8-240 1-270 (483)
27 KOG3923 D-aspartate oxidase [A 99.9 6.7E-24 1.5E-28 178.8 22.0 316 7-374 3-334 (342)
28 PRK05257 malate:quinone oxidor 99.9 3.6E-22 7.8E-27 190.7 30.6 231 4-240 2-276 (494)
29 PRK13339 malate:quinone oxidor 99.9 5.2E-23 1.1E-27 194.8 24.3 229 5-239 4-276 (497)
30 KOG2665 Predicted FAD-dependen 99.8 2.1E-19 4.7E-24 152.8 18.8 352 5-374 46-452 (453)
31 KOG0042 Glycerol-3-phosphate d 99.8 3.4E-18 7.3E-23 155.6 17.0 338 5-374 65-446 (680)
32 PRK10157 putative oxidoreducta 99.7 3.9E-16 8.4E-21 148.2 21.6 75 149-229 104-178 (428)
33 PRK06185 hypothetical protein; 99.7 7.4E-16 1.6E-20 146.4 23.2 221 150-394 105-343 (407)
34 PRK08773 2-octaprenyl-3-methyl 99.7 1.5E-15 3.2E-20 143.5 21.4 184 1-230 1-184 (392)
35 PRK06834 hypothetical protein; 99.7 2E-14 4.2E-19 138.5 23.7 72 152-229 99-170 (488)
36 COG2081 Predicted flavoprotein 99.7 2.7E-15 5.8E-20 133.6 16.0 164 7-213 3-167 (408)
37 TIGR01984 UbiH 2-polyprenyl-6- 99.7 1.2E-14 2.6E-19 137.0 21.2 224 149-392 101-332 (382)
38 PRK07608 ubiquinone biosynthes 99.7 1.9E-14 4.2E-19 135.8 21.4 76 148-230 106-182 (388)
39 TIGR02032 GG-red-SF geranylger 99.7 3E-14 6.6E-19 129.3 21.8 197 148-372 86-294 (295)
40 COG0644 FixC Dehydrogenases (f 99.6 4.9E-14 1.1E-18 132.8 23.6 155 7-224 3-161 (396)
41 TIGR01988 Ubi-OHases Ubiquinon 99.6 3E-14 6.5E-19 134.5 22.0 71 149-225 102-173 (385)
42 PLN02697 lycopene epsilon cycl 99.6 9E-14 2E-18 133.4 25.3 202 148-377 187-414 (529)
43 PRK06847 hypothetical protein; 99.6 1.2E-13 2.5E-18 129.9 25.0 63 148-214 102-164 (375)
44 PRK07494 2-octaprenyl-6-methox 99.6 7.5E-15 1.6E-19 138.6 16.6 72 149-226 107-178 (388)
45 PRK08244 hypothetical protein; 99.6 1.3E-13 2.8E-18 134.0 25.4 215 150-393 97-329 (493)
46 PRK05714 2-octaprenyl-3-methyl 99.6 7.8E-14 1.7E-18 132.4 23.3 82 149-236 108-189 (405)
47 PRK07190 hypothetical protein; 99.6 1.2E-13 2.5E-18 133.0 23.9 69 153-227 109-177 (487)
48 PRK06184 hypothetical protein; 99.6 9.1E-14 2E-18 135.3 23.4 70 151-226 107-179 (502)
49 PRK05732 2-octaprenyl-6-methox 99.6 1.3E-13 2.8E-18 130.5 23.7 75 151-231 110-185 (395)
50 PF06039 Mqo: Malate:quinone o 99.6 1E-13 2.3E-18 126.1 20.5 230 6-239 2-273 (488)
51 PRK07333 2-octaprenyl-6-methox 99.6 7.1E-14 1.5E-18 132.7 20.2 72 148-225 106-177 (403)
52 PRK10015 oxidoreductase; Provi 99.6 4.7E-13 1E-17 127.0 23.5 69 149-223 104-172 (429)
53 PRK08013 oxidoreductase; Provi 99.6 3.3E-13 7.1E-18 127.7 22.3 84 149-238 107-191 (400)
54 PRK08163 salicylate hydroxylas 99.6 1.9E-13 4.2E-18 129.4 20.7 62 149-214 105-167 (396)
55 PRK08132 FAD-dependent oxidore 99.6 5.6E-13 1.2E-17 131.1 23.9 69 153-227 125-197 (547)
56 PRK08020 ubiF 2-octaprenyl-3-m 99.6 2.5E-13 5.5E-18 128.3 20.0 70 149-224 108-178 (391)
57 PRK09126 hypothetical protein; 99.6 6E-13 1.3E-17 125.8 22.0 69 151-225 108-177 (392)
58 PRK07364 2-octaprenyl-6-methox 99.6 5.1E-13 1.1E-17 127.3 21.3 66 153-224 121-190 (415)
59 PRK06183 mhpA 3-(3-hydroxyphen 99.6 1.2E-12 2.6E-17 128.4 24.2 60 151-214 111-175 (538)
60 PF03486 HI0933_like: HI0933-l 99.6 7.4E-14 1.6E-18 130.0 14.9 157 8-213 1-166 (409)
61 PRK06126 hypothetical protein; 99.6 9.4E-13 2E-17 129.6 23.0 70 150-225 123-198 (545)
62 COG0654 UbiH 2-polyprenyl-6-me 99.6 4.2E-13 9.1E-18 126.2 19.5 221 148-393 99-335 (387)
63 PRK08849 2-octaprenyl-3-methyl 99.5 4.6E-13 1E-17 126.0 19.6 216 153-394 110-335 (384)
64 TIGR01790 carotene-cycl lycope 99.5 3.2E-12 7E-17 120.7 25.1 198 149-374 81-297 (388)
65 PF05834 Lycopene_cycl: Lycope 99.5 4.4E-13 9.5E-18 125.2 18.6 194 148-375 82-290 (374)
66 PRK07045 putative monooxygenas 99.5 1.7E-12 3.7E-17 122.4 22.7 61 151-213 104-165 (388)
67 PLN02463 lycopene beta cyclase 99.5 2.1E-12 4.5E-17 122.2 21.5 62 148-214 109-170 (447)
68 PRK08294 phenol 2-monooxygenas 99.5 7.4E-12 1.6E-16 124.1 25.5 224 150-393 138-397 (634)
69 TIGR02734 crtI_fam phytoene de 99.5 2.4E-11 5.3E-16 118.5 28.0 67 141-213 210-276 (502)
70 PRK04176 ribulose-1,5-biphosph 99.5 1.1E-12 2.3E-17 115.3 16.6 145 6-220 24-179 (257)
71 PRK06996 hypothetical protein; 99.5 1.5E-12 3.3E-17 123.0 18.5 86 149-239 111-199 (398)
72 PF01494 FAD_binding_3: FAD bi 99.5 4.1E-13 8.9E-18 125.3 14.2 73 149-225 107-182 (356)
73 PRK08850 2-octaprenyl-6-methox 99.5 6.3E-12 1.4E-16 119.2 22.1 74 151-230 109-183 (405)
74 PRK06481 fumarate reductase fl 99.5 3.2E-13 6.8E-18 131.0 13.5 186 6-214 60-252 (506)
75 PRK07588 hypothetical protein; 99.5 1.3E-11 2.7E-16 116.7 23.5 58 152-214 102-159 (391)
76 PRK05868 hypothetical protein; 99.5 5.9E-11 1.3E-15 110.9 26.9 57 153-214 105-161 (372)
77 TIGR02023 BchP-ChlP geranylger 99.5 8.3E-12 1.8E-16 117.6 21.1 69 149-224 88-164 (388)
78 PRK11445 putative oxidoreducta 99.5 2.5E-11 5.4E-16 112.6 24.0 61 149-214 95-158 (351)
79 PRK06753 hypothetical protein; 99.5 4.9E-12 1.1E-16 118.8 19.5 59 150-214 95-153 (373)
80 PRK07538 hypothetical protein; 99.5 2.2E-11 4.7E-16 115.8 23.9 62 149-214 98-166 (413)
81 PRK08274 tricarballylate dehyd 99.5 1.1E-12 2.3E-17 126.7 15.1 183 6-213 3-192 (466)
82 PRK07233 hypothetical protein; 99.4 1.4E-10 3E-15 111.3 28.6 56 153-212 198-253 (434)
83 COG1233 Phytoene dehydrogenase 99.4 1.4E-12 3.1E-17 125.5 14.1 65 141-211 215-279 (487)
84 PRK07121 hypothetical protein; 99.4 1.2E-12 2.7E-17 126.9 13.3 199 6-214 19-240 (492)
85 PLN00093 geranylgeranyl diphos 99.4 9.4E-11 2E-15 111.6 25.2 70 149-223 128-207 (450)
86 PRK06617 2-octaprenyl-6-methox 99.4 3.9E-11 8.5E-16 112.5 22.2 62 148-214 99-161 (374)
87 TIGR00292 thiazole biosynthesi 99.4 1.4E-11 3E-16 107.8 17.2 139 6-213 20-170 (254)
88 PF00890 FAD_binding_2: FAD bi 99.4 2.3E-12 4.9E-17 122.9 12.7 193 9-214 1-204 (417)
89 TIGR02730 carot_isom carotene 99.4 1E-11 2.2E-16 120.7 17.0 68 141-214 220-287 (493)
90 PRK06263 sdhA succinate dehydr 99.4 2.7E-11 5.9E-16 118.7 19.7 191 1-214 1-198 (543)
91 TIGR01989 COQ6 Ubiquinone bios 99.4 5.4E-11 1.2E-15 113.8 21.1 86 149-238 113-206 (437)
92 COG1635 THI4 Ribulose 1,5-bisp 99.4 1.3E-11 2.8E-16 100.7 13.8 139 7-214 30-179 (262)
93 PRK09078 sdhA succinate dehydr 99.4 3.5E-11 7.7E-16 118.7 19.8 192 5-215 10-214 (598)
94 PRK08958 sdhA succinate dehydr 99.4 4.3E-11 9.4E-16 117.8 19.5 194 1-214 1-207 (588)
95 PRK06452 sdhA succinate dehydr 99.4 3.4E-11 7.4E-16 118.2 18.4 188 6-213 4-198 (566)
96 PRK07804 L-aspartate oxidase; 99.4 3.2E-11 7E-16 117.8 18.0 187 6-214 15-211 (541)
97 TIGR01813 flavo_cyto_c flavocy 99.4 6.6E-12 1.4E-16 120.3 12.6 180 9-214 1-193 (439)
98 TIGR02028 ChlP geranylgeranyl 99.4 4.3E-10 9.2E-15 106.1 24.5 70 149-223 89-168 (398)
99 PLN00128 Succinate dehydrogena 99.4 5.3E-11 1.2E-15 117.7 19.1 190 6-214 49-251 (635)
100 PTZ00139 Succinate dehydrogena 99.4 6.2E-11 1.4E-15 117.2 19.6 190 6-214 28-230 (617)
101 PRK08243 4-hydroxybenzoate 3-m 99.3 6E-10 1.3E-14 105.2 25.0 58 153-213 103-163 (392)
102 PRK07573 sdhA succinate dehydr 99.3 4.7E-11 1E-15 118.4 18.0 190 6-214 34-233 (640)
103 PRK06854 adenylylsulfate reduc 99.3 2.1E-11 4.5E-16 120.5 15.3 179 6-214 10-196 (608)
104 TIGR00275 flavoprotein, HI0933 99.3 1.7E-11 3.7E-16 115.4 14.1 177 11-232 1-189 (400)
105 PRK06175 L-aspartate oxidase; 99.3 3.3E-11 7.2E-16 114.5 16.0 183 6-213 3-189 (433)
106 PRK08275 putative oxidoreducta 99.3 9.7E-11 2.1E-15 115.0 19.5 188 1-214 3-201 (554)
107 PRK05192 tRNA uridine 5-carbox 99.3 4.8E-11 1E-15 114.8 16.6 63 148-214 95-158 (618)
108 PRK11883 protoporphyrinogen ox 99.3 3.9E-10 8.4E-15 108.9 23.1 43 9-51 2-46 (451)
109 TIGR03219 salicylate_mono sali 99.3 6.9E-10 1.5E-14 105.7 24.3 59 150-214 102-160 (414)
110 PF13738 Pyr_redox_3: Pyridine 99.3 9.7E-12 2.1E-16 106.3 10.5 65 152-220 81-145 (203)
111 PLN02985 squalene monooxygenas 99.3 1.2E-09 2.5E-14 105.9 25.6 69 148-220 142-214 (514)
112 PRK06475 salicylate hydroxylas 99.3 1.5E-10 3.2E-15 109.7 19.1 61 150-214 104-168 (400)
113 PRK12842 putative succinate de 99.3 4.8E-11 1E-15 117.7 16.0 41 5-45 7-47 (574)
114 PRK05945 sdhA succinate dehydr 99.3 2.9E-11 6.3E-16 119.1 14.3 184 7-214 3-198 (575)
115 TIGR00551 nadB L-aspartate oxi 99.3 1E-10 2.2E-15 113.2 17.5 184 7-214 2-190 (488)
116 TIGR01789 lycopene_cycl lycope 99.3 1.8E-10 3.9E-15 107.2 18.5 193 148-374 84-286 (370)
117 PRK08626 fumarate reductase fl 99.3 2.4E-11 5.3E-16 120.7 13.2 196 5-214 3-221 (657)
118 PRK06069 sdhA succinate dehydr 99.3 1.4E-10 3E-15 114.5 18.3 187 4-213 2-200 (577)
119 PRK12837 3-ketosteroid-delta-1 99.3 4.9E-11 1.1E-15 116.0 14.8 44 1-45 1-44 (513)
120 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.3E-10 2.7E-15 114.9 17.9 183 9-214 1-192 (566)
121 PF01946 Thi4: Thi4 family; PD 99.3 3.9E-11 8.5E-16 98.7 11.7 139 6-213 16-165 (230)
122 PRK08205 sdhA succinate dehydr 99.3 2.2E-10 4.7E-15 113.1 19.3 191 4-214 2-207 (583)
123 PRK06134 putative FAD-binding 99.3 8.5E-11 1.9E-15 115.9 16.4 64 148-214 212-279 (581)
124 PRK07057 sdhA succinate dehydr 99.3 2.7E-10 5.9E-15 112.3 19.9 192 5-214 10-212 (591)
125 PLN02612 phytoene desaturase 99.3 8E-09 1.7E-13 101.5 29.6 59 153-213 308-366 (567)
126 PRK07803 sdhA succinate dehydr 99.3 6.6E-11 1.4E-15 117.4 15.1 185 6-214 7-214 (626)
127 TIGR00562 proto_IX_ox protopor 99.3 3.4E-09 7.3E-14 102.6 26.5 47 7-53 2-52 (462)
128 PLN02815 L-aspartate oxidase 99.3 1.6E-10 3.6E-15 113.2 17.4 186 6-214 28-223 (594)
129 TIGR02732 zeta_caro_desat caro 99.3 3.9E-09 8.4E-14 101.7 26.5 41 9-49 1-41 (474)
130 PLN02927 antheraxanthin epoxid 99.3 2.9E-10 6.2E-15 111.4 18.7 59 149-214 190-249 (668)
131 PRK07395 L-aspartate oxidase; 99.3 1.3E-10 2.9E-15 113.4 16.4 186 5-213 7-197 (553)
132 PLN02172 flavin-containing mon 99.3 1E-10 2.2E-15 111.5 15.0 67 152-222 110-182 (461)
133 PRK09231 fumarate reductase fl 99.3 2.4E-10 5.1E-15 112.6 17.9 186 6-214 3-197 (582)
134 PRK07236 hypothetical protein; 99.3 1.4E-10 3E-15 109.4 15.5 55 154-214 101-155 (386)
135 COG1232 HemY Protoporphyrinoge 99.3 2E-09 4.2E-14 100.4 22.7 48 9-56 2-51 (444)
136 PRK07512 L-aspartate oxidase; 99.3 1.6E-10 3.5E-15 112.2 16.3 187 4-213 6-197 (513)
137 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 2E-09 4.3E-14 101.5 23.1 59 153-214 103-164 (390)
138 PRK08641 sdhA succinate dehydr 99.3 2.4E-10 5.3E-15 112.7 17.5 185 7-214 3-201 (589)
139 PRK07208 hypothetical protein; 99.3 4.1E-10 8.8E-15 109.4 18.7 46 6-51 3-48 (479)
140 KOG2614 Kynurenine 3-monooxyge 99.3 1.9E-09 4.2E-14 96.8 21.2 39 7-45 2-40 (420)
141 PRK08401 L-aspartate oxidase; 99.3 3E-10 6.5E-15 109.2 17.4 175 8-215 2-177 (466)
142 TIGR01176 fum_red_Fp fumarate 99.2 3.5E-10 7.7E-15 111.1 18.1 186 6-214 2-196 (580)
143 TIGR02485 CobZ_N-term precorri 99.2 1.1E-10 2.4E-15 111.5 14.2 186 12-219 1-191 (432)
144 PRK08071 L-aspartate oxidase; 99.2 8.8E-11 1.9E-15 113.9 13.6 184 7-214 3-191 (510)
145 PTZ00363 rab-GDP dissociation 99.2 2E-10 4.3E-15 108.4 15.0 60 153-214 232-291 (443)
146 TIGR03378 glycerol3P_GlpB glyc 99.2 1.8E-10 3.8E-15 106.5 14.0 65 153-220 263-330 (419)
147 PRK05249 soluble pyridine nucl 99.2 6.3E-10 1.4E-14 107.5 18.3 58 153-214 216-273 (461)
148 PF12831 FAD_oxidored: FAD dep 99.2 9.3E-12 2E-16 118.3 5.5 145 9-211 1-148 (428)
149 PRK12416 protoporphyrinogen ox 99.2 5E-09 1.1E-13 101.3 24.4 45 9-53 3-53 (463)
150 PRK09077 L-aspartate oxidase; 99.2 9.4E-10 2E-14 107.6 19.1 186 5-214 6-208 (536)
151 PLN02576 protoporphyrinogen ox 99.2 6.4E-09 1.4E-13 101.5 24.8 49 5-53 10-59 (496)
152 TIGR01811 sdhA_Bsu succinate d 99.2 5.6E-10 1.2E-14 110.2 17.0 183 10-214 1-197 (603)
153 TIGR01292 TRX_reduct thioredox 99.2 3E-10 6.5E-15 103.4 13.8 56 153-213 57-112 (300)
154 PRK12839 hypothetical protein; 99.2 6.4E-10 1.4E-14 109.1 16.9 64 149-214 210-277 (572)
155 TIGR00136 gidA glucose-inhibit 99.2 3.3E-10 7.2E-15 108.9 14.3 63 148-213 91-154 (617)
156 PRK12835 3-ketosteroid-delta-1 99.2 5.4E-10 1.2E-14 110.0 15.8 40 5-44 9-48 (584)
157 TIGR02731 phytoene_desat phyto 99.2 8.4E-10 1.8E-14 106.4 16.6 60 152-213 212-276 (453)
158 COG1231 Monoamine oxidase [Ami 99.2 7.8E-10 1.7E-14 100.8 15.1 48 4-51 4-51 (450)
159 COG3380 Predicted NAD/FAD-depe 99.2 3E-10 6.6E-15 95.7 10.8 155 9-211 3-158 (331)
160 PRK13977 myosin-cross-reactive 99.2 1.9E-09 4E-14 103.1 17.4 43 7-49 22-68 (576)
161 PRK12844 3-ketosteroid-delta-1 99.2 5.6E-10 1.2E-14 109.5 14.1 59 153-214 208-270 (557)
162 PF01134 GIDA: Glucose inhibit 99.1 2.9E-10 6.2E-15 103.9 10.9 60 148-211 90-150 (392)
163 PRK07843 3-ketosteroid-delta-1 99.1 6.3E-10 1.4E-14 109.2 14.0 44 1-44 1-44 (557)
164 PRK12834 putative FAD-binding 99.1 2.4E-09 5.1E-14 105.3 18.0 39 6-44 3-43 (549)
165 PRK12845 3-ketosteroid-delta-1 99.1 2.1E-09 4.5E-14 105.3 17.4 59 153-214 217-279 (564)
166 TIGR02061 aprA adenosine phosp 99.1 1.9E-09 4E-14 106.0 17.0 177 9-214 1-192 (614)
167 PTZ00306 NADH-dependent fumara 99.1 6.8E-10 1.5E-14 117.4 14.8 191 5-214 407-621 (1167)
168 PRK06116 glutathione reductase 99.1 5E-09 1.1E-13 100.8 19.3 58 153-213 208-265 (450)
169 PLN02487 zeta-carotene desatur 99.1 7.4E-08 1.6E-12 93.9 27.3 63 154-218 296-366 (569)
170 COG0492 TrxB Thioredoxin reduc 99.1 8.2E-10 1.8E-14 98.8 12.5 59 152-216 60-118 (305)
171 COG2072 TrkA Predicted flavopr 99.1 9E-10 2E-14 104.6 13.4 66 156-223 85-154 (443)
172 PTZ00367 squalene epoxidase; P 99.1 3.1E-08 6.8E-13 96.6 24.3 35 6-40 32-66 (567)
173 TIGR02733 desat_CrtD C-3',4' d 99.1 3.5E-09 7.7E-14 103.1 17.4 44 8-51 2-45 (492)
174 PF04820 Trp_halogenase: Trypt 99.1 7.8E-10 1.7E-14 105.5 12.3 64 147-213 148-211 (454)
175 TIGR03143 AhpF_homolog putativ 99.1 1.2E-09 2.7E-14 107.2 13.9 56 153-214 60-115 (555)
176 PRK06370 mercuric reductase; V 99.1 2.4E-09 5.2E-14 103.3 15.5 40 4-43 2-41 (463)
177 PRK08010 pyridine nucleotide-d 99.1 3.9E-09 8.5E-14 101.2 16.5 57 153-214 199-255 (441)
178 TIGR01424 gluta_reduc_2 glutat 99.1 2.9E-09 6.3E-14 102.1 15.5 37 7-44 2-38 (446)
179 PRK12843 putative FAD-binding 99.1 2.2E-09 4.8E-14 105.8 14.7 62 150-214 218-283 (578)
180 PRK06467 dihydrolipoamide dehy 99.1 4.1E-09 8.9E-14 101.6 16.2 40 5-44 2-41 (471)
181 PRK13800 putative oxidoreducta 99.1 6.5E-09 1.4E-13 107.6 18.7 37 6-42 12-48 (897)
182 COG1053 SdhA Succinate dehydro 99.1 7.3E-10 1.6E-14 107.2 10.9 192 3-213 2-202 (562)
183 PRK15317 alkyl hydroperoxide r 99.1 2.7E-09 5.8E-14 104.2 14.8 57 153-213 266-322 (517)
184 KOG2415 Electron transfer flav 99.1 1.2E-09 2.7E-14 97.4 11.1 171 6-224 75-269 (621)
185 PLN02661 Putative thiazole syn 99.1 8E-09 1.7E-13 93.0 16.3 39 6-44 91-130 (357)
186 COG2907 Predicted NAD/FAD-bind 99.1 1.3E-09 2.9E-14 95.0 10.9 47 2-49 3-49 (447)
187 TIGR01421 gluta_reduc_1 glutat 99.1 3.4E-09 7.4E-14 101.6 15.0 36 7-42 2-37 (450)
188 PLN02268 probable polyamine ox 99.1 3.7E-09 8E-14 101.4 15.2 43 8-50 1-43 (435)
189 PLN02676 polyamine oxidase 99.1 8.6E-09 1.9E-13 99.4 17.7 45 5-49 24-69 (487)
190 COG2509 Uncharacterized FAD-de 99.1 9.4E-09 2E-13 93.4 16.4 75 143-220 163-237 (486)
191 PRK05976 dihydrolipoamide dehy 99.0 7.6E-09 1.6E-13 100.1 16.2 37 5-41 2-38 (472)
192 COG0029 NadB Aspartate oxidase 99.0 1.7E-09 3.7E-14 99.3 10.7 181 9-213 9-196 (518)
193 TIGR03140 AhpF alkyl hydropero 99.0 6.4E-09 1.4E-13 101.4 15.0 57 153-213 267-323 (515)
194 PRK07251 pyridine nucleotide-d 99.0 1.3E-08 2.9E-13 97.5 16.8 57 153-214 198-254 (438)
195 PRK14694 putative mercuric red 99.0 1.8E-08 4E-13 97.3 17.6 57 153-214 218-274 (468)
196 PRK06327 dihydrolipoamide dehy 99.0 1.6E-08 3.5E-13 97.8 17.0 33 6-38 3-35 (475)
197 KOG0029 Amine oxidase [Seconda 99.0 1.5E-09 3.2E-14 103.6 9.5 45 6-50 14-58 (501)
198 PLN02568 polyamine oxidase 99.0 2.7E-08 5.9E-13 96.7 18.3 44 6-49 4-52 (539)
199 COG1252 Ndh NADH dehydrogenase 99.0 5.9E-08 1.3E-12 89.3 19.3 62 151-220 207-269 (405)
200 PRK06416 dihydrolipoamide dehy 99.0 1.4E-08 3.1E-13 98.0 16.4 58 153-214 213-273 (462)
201 PLN02507 glutathione reductase 99.0 1.5E-08 3.3E-13 98.2 16.3 33 6-38 24-56 (499)
202 TIGR01350 lipoamide_DH dihydro 99.0 1.4E-08 3E-13 98.2 15.8 58 153-214 211-270 (461)
203 KOG1399 Flavin-containing mono 99.0 8.8E-09 1.9E-13 96.6 13.5 64 153-220 90-160 (448)
204 PRK14727 putative mercuric red 99.0 4.1E-08 8.9E-13 95.0 18.7 57 153-214 228-284 (479)
205 PF00732 GMC_oxred_N: GMC oxid 99.0 5.4E-09 1.2E-13 94.9 11.9 35 8-42 1-36 (296)
206 PTZ00058 glutathione reductase 99.0 1.2E-08 2.5E-13 99.6 14.4 37 6-42 47-83 (561)
207 KOG4254 Phytoene desaturase [C 99.0 3E-08 6.6E-13 89.7 15.2 70 139-214 253-322 (561)
208 PRK06115 dihydrolipoamide dehy 98.9 2.1E-08 4.5E-13 96.7 15.4 39 7-45 3-41 (466)
209 PF13454 NAD_binding_9: FAD-NA 98.9 1.9E-08 4.2E-13 81.6 12.9 41 167-211 114-155 (156)
210 PLN02546 glutathione reductase 98.9 2.2E-08 4.8E-13 97.7 15.2 32 7-38 79-110 (558)
211 PRK10262 thioredoxin reductase 98.9 2.2E-08 4.9E-13 91.9 14.3 38 4-41 3-40 (321)
212 KOG1298 Squalene monooxygenase 98.9 5.9E-09 1.3E-13 92.3 9.7 168 5-220 43-214 (509)
213 COG1249 Lpd Pyruvate/2-oxoglut 98.9 4.7E-08 1E-12 92.2 16.3 57 152-212 213-271 (454)
214 PRK05329 anaerobic glycerol-3- 98.9 1.8E-07 3.9E-12 87.8 19.7 58 153-213 259-318 (422)
215 PRK13748 putative mercuric red 98.9 1.3E-07 2.8E-12 93.7 19.4 57 153-214 310-366 (561)
216 PTZ00052 thioredoxin reductase 98.9 1.5E-07 3.2E-12 91.5 18.8 58 153-214 222-279 (499)
217 PF00743 FMO-like: Flavin-bind 98.9 2E-08 4.3E-13 97.3 12.2 67 150-218 81-155 (531)
218 TIGR02053 MerA mercuric reduct 98.9 1.3E-07 2.8E-12 91.4 17.9 57 153-213 207-266 (463)
219 PF13450 NAD_binding_8: NAD(P) 98.9 2.6E-09 5.6E-14 72.9 4.4 40 12-51 1-40 (68)
220 KOG1335 Dihydrolipoamide dehyd 98.9 8E-08 1.7E-12 85.2 14.6 56 153-211 252-312 (506)
221 PRK07845 flavoprotein disulfid 98.9 9.7E-08 2.1E-12 92.1 16.7 34 9-42 3-36 (466)
222 PRK09897 hypothetical protein; 98.9 1.2E-07 2.5E-12 91.7 17.0 54 156-213 110-166 (534)
223 PRK02106 choline dehydrogenase 98.9 1.9E-07 4.1E-12 92.3 18.5 37 4-40 2-39 (560)
224 COG3075 GlpB Anaerobic glycero 98.8 7.8E-08 1.7E-12 83.6 13.2 73 153-228 258-333 (421)
225 PRK07818 dihydrolipoamide dehy 98.8 1.3E-07 2.8E-12 91.4 15.9 36 7-42 4-39 (466)
226 TIGR01810 betA choline dehydro 98.8 1.4E-07 3E-12 92.7 16.1 33 9-41 1-34 (532)
227 PRK08255 salicylyl-CoA 5-hydro 98.8 1.9E-07 4.1E-12 95.2 17.5 49 150-214 94-142 (765)
228 PLN02529 lysine-specific histo 98.8 1.6E-07 3.4E-12 93.7 15.9 45 6-50 159-203 (738)
229 PRK06912 acoL dihydrolipoamide 98.8 1.7E-07 3.7E-12 90.3 15.8 34 9-42 2-35 (458)
230 KOG2404 Fumarate reductase, fl 98.8 4.8E-08 1E-12 84.6 10.2 37 9-45 11-47 (477)
231 TIGR01423 trypano_reduc trypan 98.8 1.8E-07 4E-12 90.2 15.0 34 6-39 2-36 (486)
232 PLN02328 lysine-specific histo 98.8 1.4E-07 3E-12 94.6 14.4 45 6-50 237-281 (808)
233 COG0445 GidA Flavin-dependent 98.8 2.4E-08 5.2E-13 92.8 8.3 153 7-214 4-159 (621)
234 PRK06292 dihydrolipoamide dehy 98.8 2E-07 4.4E-12 90.1 14.8 34 7-40 3-36 (460)
235 PF00070 Pyr_redox: Pyridine n 98.7 2.2E-07 4.8E-12 66.0 10.8 34 9-42 1-34 (80)
236 COG3573 Predicted oxidoreducta 98.7 4E-07 8.8E-12 79.4 14.1 36 6-41 4-39 (552)
237 KOG0685 Flavin-containing amin 98.7 4.8E-07 1E-11 82.9 15.3 44 5-48 19-63 (498)
238 PLN03000 amine oxidase 98.7 1.7E-07 3.7E-12 94.0 12.7 45 6-50 183-227 (881)
239 TIGR01438 TGR thioredoxin and 98.7 6.5E-07 1.4E-11 86.5 15.5 33 7-39 2-34 (484)
240 COG2303 BetA Choline dehydroge 98.7 3.9E-07 8.5E-12 89.0 13.5 39 2-40 2-40 (542)
241 PTZ00153 lipoamide dehydrogena 98.7 8.5E-07 1.8E-11 88.0 16.0 34 6-39 115-148 (659)
242 PF07992 Pyr_redox_2: Pyridine 98.6 3.2E-07 6.9E-12 78.1 11.1 32 9-40 1-32 (201)
243 PRK07846 mycothione reductase; 98.6 3.8E-06 8.2E-11 80.7 19.3 56 154-214 208-263 (451)
244 PRK12779 putative bifunctional 98.6 1.3E-07 2.9E-12 97.6 9.2 38 6-43 305-342 (944)
245 COG3349 Uncharacterized conser 98.6 7.8E-08 1.7E-12 89.6 5.9 44 9-52 2-45 (485)
246 PRK04965 NADH:flavorubredoxin 98.6 1E-06 2.3E-11 82.7 13.5 62 157-223 187-249 (377)
247 PRK09564 coenzyme A disulfide 98.5 6.5E-07 1.4E-11 86.2 11.5 49 161-213 64-115 (444)
248 PRK09754 phenylpropionate diox 98.5 1.9E-06 4.1E-11 81.5 14.2 58 157-219 190-248 (396)
249 TIGR02462 pyranose_ox pyranose 98.5 5.3E-06 1.2E-10 80.2 17.1 36 8-43 1-36 (544)
250 PRK09853 putative selenate red 98.5 6.3E-07 1.4E-11 91.6 11.2 38 6-43 538-575 (1019)
251 TIGR01372 soxA sarcosine oxida 98.5 4.3E-06 9.3E-11 87.7 17.7 40 6-45 162-201 (985)
252 TIGR03452 mycothione_red mycot 98.5 1.5E-05 3.2E-10 76.7 19.5 57 153-214 210-266 (452)
253 TIGR00031 UDP-GALP_mutase UDP- 98.5 2.2E-07 4.7E-12 85.9 6.6 46 8-53 2-47 (377)
254 PTZ00318 NADH dehydrogenase-li 98.5 6.4E-07 1.4E-11 85.4 9.5 36 6-41 9-44 (424)
255 PLN02785 Protein HOTHEAD 98.5 4.2E-06 9.1E-11 82.4 15.1 36 5-41 53-88 (587)
256 PLN02976 amine oxidase 98.5 7.1E-06 1.5E-10 85.7 16.8 43 6-48 692-734 (1713)
257 TIGR03169 Nterm_to_SelD pyridi 98.4 7.4E-07 1.6E-11 83.4 8.8 48 159-213 60-107 (364)
258 COG0562 Glf UDP-galactopyranos 98.4 5.3E-07 1.1E-11 78.4 7.0 54 7-60 1-56 (374)
259 PRK13512 coenzyme A disulfide 98.4 2.3E-06 5E-11 82.0 11.3 34 9-42 3-38 (438)
260 KOG0405 Pyridine nucleotide-di 98.4 6.1E-06 1.3E-10 72.6 12.3 42 4-45 17-58 (478)
261 PRK09754 phenylpropionate diox 98.4 2.4E-06 5.3E-11 80.8 10.8 44 164-213 69-112 (396)
262 TIGR03467 HpnE squalene-associ 98.4 0.00055 1.2E-08 65.4 27.0 54 156-213 200-254 (419)
263 PRK12778 putative bifunctional 98.4 9.8E-07 2.1E-11 90.2 8.3 38 6-43 430-467 (752)
264 PRK12775 putative trifunctiona 98.4 9.4E-07 2E-11 92.2 8.0 37 7-43 430-466 (1006)
265 KOG4716 Thioredoxin reductase 98.3 1E-06 2.2E-11 77.1 6.4 49 5-54 17-65 (503)
266 PRK04965 NADH:flavorubredoxin 98.3 5.3E-06 1.1E-10 78.0 11.8 34 8-41 3-38 (377)
267 TIGR02374 nitri_red_nirB nitri 98.3 2.2E-06 4.7E-11 87.8 9.4 46 162-213 63-108 (785)
268 PLN02507 glutathione reductase 98.3 1.1E-05 2.3E-10 78.6 13.5 55 156-214 247-301 (499)
269 PRK14989 nitrite reductase sub 98.3 1E-05 2.2E-10 83.0 13.9 63 156-220 190-253 (847)
270 TIGR01421 gluta_reduc_1 glutat 98.3 1.2E-05 2.5E-10 77.3 13.4 56 156-214 210-266 (450)
271 TIGR02374 nitri_red_nirB nitri 98.3 9.3E-06 2E-10 83.2 13.4 60 157-220 186-246 (785)
272 PRK09564 coenzyme A disulfide 98.3 1.5E-05 3.3E-10 76.7 13.9 61 155-220 193-254 (444)
273 KOG0404 Thioredoxin reductase 98.3 4.1E-06 8.8E-11 69.0 8.2 58 153-216 70-127 (322)
274 KOG2311 NAD/FAD-utilizing prot 98.3 4.7E-06 1E-10 76.3 9.0 37 5-41 26-62 (679)
275 TIGR01424 gluta_reduc_2 glutat 98.3 1.6E-05 3.5E-10 76.4 13.3 53 158-214 212-264 (446)
276 PRK05976 dihydrolipoamide dehy 98.2 1.7E-05 3.7E-10 76.9 13.3 34 8-41 181-214 (472)
277 PRK07845 flavoprotein disulfid 98.2 2.1E-05 4.4E-10 76.1 13.5 54 157-214 222-275 (466)
278 PRK14989 nitrite reductase sub 98.2 7.2E-06 1.6E-10 84.1 10.8 46 162-213 68-113 (847)
279 PRK07818 dihydrolipoamide dehy 98.2 1.8E-05 4E-10 76.5 13.2 34 8-41 173-206 (466)
280 TIGR03385 CoA_CoA_reduc CoA-di 98.2 2.2E-05 4.8E-10 75.1 13.6 58 157-220 183-241 (427)
281 PRK06912 acoL dihydrolipoamide 98.2 2.6E-05 5.7E-10 75.2 14.1 55 156-214 214-269 (458)
282 PTZ00318 NADH dehydrogenase-li 98.2 2.4E-05 5.2E-10 74.7 13.0 58 155-220 230-287 (424)
283 PF01593 Amino_oxidase: Flavin 98.2 1.7E-05 3.7E-10 76.0 11.6 54 156-213 212-265 (450)
284 COG4529 Uncharacterized protei 98.2 3.2E-05 7E-10 71.8 12.5 36 8-43 2-40 (474)
285 PRK05675 sdhA succinate dehydr 98.1 8.3E-05 1.8E-09 73.5 15.9 61 152-214 125-190 (570)
286 PRK06370 mercuric reductase; V 98.1 3.7E-05 8.1E-10 74.4 13.3 34 8-41 172-205 (463)
287 PF06100 Strep_67kDa_ant: Stre 98.1 7.2E-05 1.6E-09 70.0 14.3 41 8-48 3-47 (500)
288 COG3634 AhpF Alkyl hydroperoxi 98.1 7.6E-06 1.6E-10 72.0 7.3 58 153-212 266-324 (520)
289 TIGR01423 trypano_reduc trypan 98.1 4.6E-05 1E-09 73.7 13.3 57 155-214 233-289 (486)
290 PRK06115 dihydrolipoamide dehy 98.1 4.2E-05 9.1E-10 74.0 13.1 35 7-41 174-208 (466)
291 PTZ00058 glutathione reductase 98.1 5.4E-05 1.2E-09 74.2 13.6 35 7-41 237-271 (561)
292 PRK13512 coenzyme A disulfide 98.1 3.6E-05 7.9E-10 73.8 12.2 56 157-220 193-249 (438)
293 PRK06327 dihydrolipoamide dehy 98.1 4.6E-05 9.9E-10 73.9 12.9 34 8-41 184-217 (475)
294 COG1148 HdrA Heterodisulfide r 98.1 4.8E-06 1E-10 76.5 5.0 40 7-46 124-163 (622)
295 PRK05335 tRNA (uracil-5-)-meth 98.0 5.7E-06 1.2E-10 76.8 5.2 35 8-42 3-37 (436)
296 TIGR01438 TGR thioredoxin and 98.0 7.3E-05 1.6E-09 72.5 13.0 54 157-214 224-280 (484)
297 TIGR03315 Se_ygfK putative sel 98.0 6E-06 1.3E-10 85.0 5.5 39 7-45 537-575 (1012)
298 KOG1238 Glucose dehydrogenase/ 98.0 0.00025 5.5E-09 68.3 15.8 38 5-42 55-93 (623)
299 PF13434 K_oxygenase: L-lysine 98.0 7.4E-06 1.6E-10 75.2 5.4 36 7-42 2-38 (341)
300 KOG1336 Monodehydroascorbate/f 98.0 5.6E-05 1.2E-09 69.8 10.9 58 154-213 256-313 (478)
301 TIGR03862 flavo_PP4765 unchara 98.0 6.6E-05 1.4E-09 69.3 11.1 57 151-213 84-141 (376)
302 PRK12831 putative oxidoreducta 98.0 8.7E-06 1.9E-10 78.4 5.6 39 6-44 139-177 (464)
303 PRK06467 dihydrolipoamide dehy 97.9 0.00013 2.9E-09 70.6 12.9 34 8-41 175-208 (471)
304 PF00996 GDI: GDP dissociation 97.9 0.00011 2.3E-09 69.1 11.7 63 141-209 223-285 (438)
305 PLN02546 glutathione reductase 97.9 0.00015 3.3E-09 71.1 13.2 56 156-214 296-351 (558)
306 COG0446 HcaD Uncharacterized N 97.9 0.00011 2.4E-09 70.0 11.9 103 8-218 137-242 (415)
307 PTZ00153 lipoamide dehydrogena 97.9 0.00017 3.7E-09 71.8 13.0 35 8-42 313-347 (659)
308 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.7E-05 3.7E-10 74.2 4.9 35 8-42 1-35 (433)
309 TIGR01316 gltA glutamate synth 97.9 2.2E-05 4.7E-10 75.4 5.7 39 6-44 132-170 (449)
310 KOG3855 Monooxygenase involved 97.9 0.00095 2.1E-08 60.6 15.4 76 150-227 147-229 (481)
311 KOG1276 Protoporphyrinogen oxi 97.8 2.2E-05 4.7E-10 71.2 5.1 43 6-48 10-54 (491)
312 PLN02852 ferredoxin-NADP+ redu 97.8 2.6E-05 5.6E-10 74.8 5.7 40 6-45 25-66 (491)
313 PRK06292 dihydrolipoamide dehy 97.8 0.00039 8.4E-09 67.3 13.3 34 8-41 170-203 (460)
314 PRK12810 gltD glutamate syntha 97.8 3.5E-05 7.6E-10 74.6 5.7 38 7-44 143-180 (471)
315 PRK12769 putative oxidoreducta 97.8 3.3E-05 7.2E-10 77.8 5.5 39 6-44 326-364 (654)
316 COG1206 Gid NAD(FAD)-utilizing 97.7 0.00043 9.4E-09 60.9 11.2 36 7-42 3-38 (439)
317 PRK11749 dihydropyrimidine deh 97.7 4.3E-05 9.4E-10 73.7 5.7 39 6-44 139-177 (457)
318 PRK06567 putative bifunctional 97.7 4.9E-05 1.1E-09 77.3 5.5 36 6-41 382-417 (1028)
319 PRK12814 putative NADPH-depend 97.7 6.3E-05 1.4E-09 75.6 5.6 38 7-44 193-230 (652)
320 PRK12770 putative glutamate sy 97.6 8.4E-05 1.8E-09 69.1 5.9 40 5-44 16-55 (352)
321 PTZ00188 adrenodoxin reductase 97.6 7.7E-05 1.7E-09 70.6 5.5 39 7-45 39-78 (506)
322 PF13434 K_oxygenase: L-lysine 97.6 0.0015 3.2E-08 60.1 13.8 36 6-41 189-226 (341)
323 TIGR03169 Nterm_to_SelD pyridi 97.6 0.0011 2.4E-08 62.0 13.2 56 157-220 195-250 (364)
324 TIGR01318 gltD_gamma_fam gluta 97.6 8.4E-05 1.8E-09 71.7 5.6 39 6-44 140-178 (467)
325 TIGR01816 sdhA_forward succina 97.6 0.00058 1.3E-08 67.6 11.1 60 152-214 118-182 (565)
326 PRK12809 putative oxidoreducta 97.5 0.00012 2.6E-09 73.5 5.6 38 7-44 310-347 (639)
327 KOG2495 NADH-dehydrogenase (ub 97.5 0.011 2.4E-07 54.2 17.3 90 123-220 243-336 (491)
328 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00015 3.3E-09 70.3 5.5 38 7-44 143-180 (485)
329 TIGR03140 AhpF alkyl hydropero 97.5 0.00091 2E-08 65.6 10.9 33 8-40 353-385 (515)
330 PRK10262 thioredoxin reductase 97.5 0.0013 2.7E-08 60.5 11.2 33 8-40 147-179 (321)
331 TIGR01316 gltA glutamate synth 97.5 0.0012 2.5E-08 63.6 11.2 33 8-40 273-305 (449)
332 KOG2960 Protein involved in th 97.4 3.3E-05 7.2E-10 63.2 0.3 39 7-45 76-116 (328)
333 TIGR01292 TRX_reduct thioredox 97.4 0.0012 2.7E-08 59.8 10.6 32 8-39 142-173 (300)
334 PRK12771 putative glutamate sy 97.4 0.00019 4.2E-09 71.1 5.1 38 7-44 137-174 (564)
335 PRK12770 putative glutamate sy 97.4 0.0013 2.9E-08 61.1 9.9 32 8-39 173-205 (352)
336 COG0493 GltD NADPH-dependent g 97.3 0.00023 5.1E-09 67.6 4.1 37 8-44 124-160 (457)
337 PRK13984 putative oxidoreducta 97.3 0.00036 7.9E-09 69.9 5.6 39 6-44 282-320 (604)
338 KOG1800 Ferredoxin/adrenodoxin 97.2 0.0004 8.7E-09 62.3 4.7 42 5-46 18-61 (468)
339 KOG3851 Sulfide:quinone oxidor 97.2 0.019 4E-07 50.7 14.3 73 145-219 228-302 (446)
340 COG3486 IucD Lysine/ornithine 97.2 0.0024 5.3E-08 58.1 9.3 39 4-42 2-41 (436)
341 PRK12831 putative oxidoreducta 97.0 0.0072 1.6E-07 58.4 11.7 33 8-40 282-314 (464)
342 PRK11749 dihydropyrimidine deh 97.0 0.0071 1.5E-07 58.5 11.6 33 7-39 273-306 (457)
343 COG1251 NirB NAD(P)H-nitrite r 97.0 0.0027 5.9E-08 62.1 8.4 54 157-214 191-244 (793)
344 PRK15317 alkyl hydroperoxide r 97.0 0.0055 1.2E-07 60.2 10.3 33 8-40 352-384 (517)
345 KOG1439 RAB proteins geranylge 96.9 0.021 4.4E-07 52.1 12.3 43 6-48 3-45 (440)
346 KOG0399 Glutamate synthase [Am 96.7 0.0016 3.5E-08 66.2 4.2 37 8-44 1786-1822(2142)
347 PRK12810 gltD glutamate syntha 96.6 0.028 6.1E-07 54.5 11.7 32 8-39 282-314 (471)
348 PRK12778 putative bifunctional 96.5 0.03 6.5E-07 57.8 11.9 33 8-40 571-604 (752)
349 KOG1336 Monodehydroascorbate/f 96.5 0.015 3.2E-07 54.3 8.4 43 163-211 137-179 (478)
350 PF01210 NAD_Gly3P_dh_N: NAD-d 96.3 0.0049 1.1E-07 49.9 4.2 32 9-40 1-32 (157)
351 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0055 1.2E-07 50.8 4.5 32 9-40 1-32 (180)
352 TIGR01318 gltD_gamma_fam gluta 96.3 0.054 1.2E-06 52.4 11.7 33 8-40 283-316 (467)
353 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.0047 1E-07 51.4 3.6 32 9-40 2-33 (185)
354 PF02558 ApbA: Ketopantoate re 96.2 0.0064 1.4E-07 48.9 4.3 31 10-40 1-31 (151)
355 PRK12769 putative oxidoreducta 96.2 0.062 1.3E-06 54.5 12.1 33 8-40 469-502 (654)
356 COG0569 TrkA K+ transport syst 96.1 0.0068 1.5E-07 52.2 4.3 33 9-41 2-34 (225)
357 PRK07066 3-hydroxybutyryl-CoA 96.1 0.0096 2.1E-07 54.1 5.1 34 7-40 7-40 (321)
358 PRK06249 2-dehydropantoate 2-r 96.0 0.011 2.5E-07 53.9 5.2 34 7-40 5-38 (313)
359 PRK12779 putative bifunctional 95.8 0.099 2.1E-06 55.0 11.8 32 8-39 448-479 (944)
360 PRK07819 3-hydroxybutyryl-CoA 95.8 0.013 2.7E-07 52.7 4.6 33 8-40 6-38 (286)
361 COG1251 NirB NAD(P)H-nitrite r 95.7 0.11 2.3E-06 51.5 10.6 46 162-213 68-113 (793)
362 PRK12814 putative NADPH-depend 95.6 0.12 2.7E-06 52.2 11.4 33 8-40 324-357 (652)
363 PRK09853 putative selenate red 95.6 0.12 2.6E-06 54.0 11.3 33 8-40 669-703 (1019)
364 PRK05708 2-dehydropantoate 2-r 95.6 0.017 3.7E-07 52.5 4.8 32 8-39 3-34 (305)
365 PRK06129 3-hydroxyacyl-CoA deh 95.6 0.015 3.3E-07 52.9 4.5 32 9-40 4-35 (308)
366 PRK01438 murD UDP-N-acetylmura 95.6 0.015 3.2E-07 56.7 4.6 33 8-40 17-49 (480)
367 COG1249 Lpd Pyruvate/2-oxoglut 95.6 0.018 3.8E-07 55.0 4.9 36 7-42 173-208 (454)
368 PRK07251 pyridine nucleotide-d 95.5 0.02 4.4E-07 55.1 4.9 35 8-42 158-192 (438)
369 COG1004 Ugd Predicted UDP-gluc 95.4 0.019 4.2E-07 52.4 4.2 32 9-40 2-33 (414)
370 PRK02705 murD UDP-N-acetylmura 95.4 0.02 4.3E-07 55.5 4.6 34 9-42 2-35 (459)
371 TIGR01350 lipoamide_DH dihydro 95.3 0.025 5.4E-07 54.8 4.9 35 8-42 171-205 (461)
372 PRK07846 mycothione reductase; 95.2 0.026 5.6E-07 54.4 4.9 35 8-42 167-201 (451)
373 TIGR02053 MerA mercuric reduct 95.2 0.028 6E-07 54.5 4.9 35 8-42 167-201 (463)
374 COG5044 MRS6 RAB proteins gera 95.2 0.04 8.7E-07 49.7 5.3 43 5-47 4-46 (434)
375 PRK08293 3-hydroxybutyryl-CoA 95.0 0.031 6.8E-07 50.3 4.5 32 8-39 4-35 (287)
376 PRK09260 3-hydroxybutyryl-CoA 95.0 0.032 7E-07 50.3 4.6 32 9-40 3-34 (288)
377 PF01488 Shikimate_DH: Shikima 95.0 0.047 1E-06 42.9 5.0 33 7-39 12-45 (135)
378 PRK07530 3-hydroxybutyryl-CoA 95.0 0.037 8.1E-07 50.0 5.0 33 8-40 5-37 (292)
379 PRK06416 dihydrolipoamide dehy 95.0 0.033 7.2E-07 54.0 4.9 35 8-42 173-207 (462)
380 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.041 8.9E-07 53.6 5.3 40 1-40 1-40 (507)
381 PRK12921 2-dehydropantoate 2-r 94.9 0.034 7.4E-07 50.6 4.5 30 9-38 2-31 (305)
382 KOG2755 Oxidoreductase [Genera 94.9 0.02 4.3E-07 49.1 2.7 33 10-42 2-36 (334)
383 TIGR02354 thiF_fam2 thiamine b 94.9 0.043 9.4E-07 46.3 4.8 35 7-41 21-56 (200)
384 PRK06522 2-dehydropantoate 2-r 94.9 0.034 7.3E-07 50.6 4.5 31 9-39 2-32 (304)
385 PRK06719 precorrin-2 dehydroge 94.8 0.053 1.1E-06 43.8 4.8 32 7-38 13-44 (157)
386 PRK08229 2-dehydropantoate 2-r 94.8 0.04 8.7E-07 51.0 4.6 31 9-39 4-34 (341)
387 PTZ00082 L-lactate dehydrogena 94.8 0.055 1.2E-06 49.4 5.3 40 1-41 1-41 (321)
388 PRK14618 NAD(P)H-dependent gly 94.8 0.047 1E-06 50.2 5.0 33 7-39 4-36 (328)
389 PRK05249 soluble pyridine nucl 94.7 0.042 9.2E-07 53.2 4.9 35 8-42 176-210 (461)
390 PRK14106 murD UDP-N-acetylmura 94.7 0.048 1E-06 52.7 5.2 34 7-40 5-38 (450)
391 TIGR01470 cysG_Nterm siroheme 94.7 0.05 1.1E-06 46.1 4.6 32 8-39 10-41 (205)
392 TIGR03452 mycothione_red mycot 94.7 0.046 1E-06 52.7 4.9 35 8-42 170-204 (452)
393 PF00899 ThiF: ThiF family; I 94.7 0.045 9.7E-07 43.0 4.0 35 7-41 2-37 (135)
394 PRK06718 precorrin-2 dehydroge 94.6 0.058 1.3E-06 45.6 4.9 33 7-39 10-42 (202)
395 PRK12775 putative trifunctiona 94.6 0.25 5.3E-06 52.6 10.2 32 8-39 572-604 (1006)
396 PF01262 AlaDh_PNT_C: Alanine 94.5 0.058 1.3E-06 44.2 4.5 34 7-40 20-53 (168)
397 PRK06130 3-hydroxybutyryl-CoA 94.5 0.058 1.3E-06 49.3 5.0 33 8-40 5-37 (311)
398 PRK06035 3-hydroxyacyl-CoA deh 94.5 0.052 1.1E-06 49.0 4.5 33 8-40 4-36 (291)
399 PRK05808 3-hydroxybutyryl-CoA 94.5 0.06 1.3E-06 48.4 4.9 32 9-40 5-36 (282)
400 PRK12809 putative oxidoreducta 94.4 0.46 9.9E-06 48.1 11.5 33 8-40 452-485 (639)
401 TIGR01763 MalateDH_bact malate 94.4 0.058 1.3E-06 48.9 4.5 33 8-40 2-35 (305)
402 PRK11064 wecC UDP-N-acetyl-D-m 94.3 0.053 1.2E-06 51.5 4.4 33 8-40 4-36 (415)
403 cd05292 LDH_2 A subgroup of L- 94.3 0.06 1.3E-06 48.9 4.6 32 9-40 2-35 (308)
404 PLN02545 3-hydroxybutyryl-CoA 94.2 0.077 1.7E-06 48.0 5.0 33 8-40 5-37 (295)
405 PF13241 NAD_binding_7: Putati 94.2 0.037 7.9E-07 41.2 2.4 34 7-40 7-40 (103)
406 cd01080 NAD_bind_m-THF_DH_Cycl 94.2 0.082 1.8E-06 43.1 4.6 33 7-39 44-77 (168)
407 COG1252 Ndh NADH dehydrogenase 94.0 0.12 2.6E-06 48.3 5.9 35 8-42 156-203 (405)
408 COG1748 LYS9 Saccharopine dehy 94.0 0.077 1.7E-06 49.2 4.6 33 8-40 2-35 (389)
409 COG0492 TrxB Thioredoxin reduc 94.0 0.7 1.5E-05 41.8 10.6 34 8-41 144-177 (305)
410 PRK14620 NAD(P)H-dependent gly 93.9 0.078 1.7E-06 48.8 4.6 32 9-40 2-33 (326)
411 PRK04148 hypothetical protein; 93.9 0.052 1.1E-06 42.1 2.8 33 8-41 18-50 (134)
412 PRK08010 pyridine nucleotide-d 93.9 0.082 1.8E-06 50.9 4.9 35 8-42 159-193 (441)
413 PRK14619 NAD(P)H-dependent gly 93.9 0.096 2.1E-06 47.7 5.0 34 7-40 4-37 (308)
414 PRK15116 sulfur acceptor prote 93.8 0.1 2.2E-06 46.0 4.9 35 7-41 30-65 (268)
415 PRK07688 thiamine/molybdopteri 93.8 0.095 2.1E-06 48.2 4.9 35 7-41 24-59 (339)
416 PRK06116 glutathione reductase 93.8 0.087 1.9E-06 50.9 4.9 35 8-42 168-202 (450)
417 PTZ00052 thioredoxin reductase 93.8 0.087 1.9E-06 51.5 4.8 32 8-39 183-214 (499)
418 PRK12475 thiamine/molybdopteri 93.7 0.1 2.2E-06 48.0 4.8 35 7-41 24-59 (338)
419 COG0686 Ald Alanine dehydrogen 93.7 0.058 1.3E-06 47.5 3.0 33 7-39 168-200 (371)
420 TIGR03143 AhpF_homolog putativ 93.7 0.077 1.7E-06 52.6 4.3 34 8-41 144-177 (555)
421 PRK14694 putative mercuric red 93.7 0.097 2.1E-06 50.8 4.9 32 8-39 179-210 (468)
422 PRK13748 putative mercuric red 93.7 0.091 2E-06 52.4 4.8 32 8-39 271-302 (561)
423 PF02254 TrkA_N: TrkA-N domain 93.6 0.12 2.7E-06 39.2 4.5 31 10-40 1-31 (116)
424 COG3486 IucD Lysine/ornithine 93.6 0.6 1.3E-05 43.1 9.4 44 166-212 291-339 (436)
425 PRK14727 putative mercuric red 93.6 0.089 1.9E-06 51.2 4.6 32 8-39 189-220 (479)
426 TIGR03026 NDP-sugDHase nucleot 93.6 0.081 1.8E-06 50.4 4.2 32 9-40 2-33 (411)
427 PF00743 FMO-like: Flavin-bind 93.5 0.27 5.8E-06 48.3 7.7 32 8-39 184-215 (531)
428 PF00056 Ldh_1_N: lactate/mala 93.5 0.14 3E-06 40.6 4.7 32 9-40 2-36 (141)
429 PRK08644 thiamine biosynthesis 93.5 0.13 2.8E-06 43.9 4.8 35 7-41 28-63 (212)
430 PRK00094 gpsA NAD(P)H-dependen 93.4 0.11 2.5E-06 47.6 4.7 32 9-40 3-34 (325)
431 TIGR00518 alaDH alanine dehydr 93.4 0.12 2.6E-06 48.3 4.8 33 7-39 167-199 (370)
432 KOG1346 Programmed cell death 93.3 0.11 2.5E-06 47.6 4.3 67 148-218 388-455 (659)
433 PRK07531 bifunctional 3-hydrox 93.3 0.11 2.5E-06 50.6 4.7 32 9-40 6-37 (495)
434 cd01487 E1_ThiF_like E1_ThiF_l 93.3 0.15 3.3E-06 42.0 4.8 33 9-41 1-34 (174)
435 COG1893 ApbA Ketopantoate redu 93.3 0.11 2.3E-06 47.2 4.1 33 9-41 2-34 (307)
436 TIGR02356 adenyl_thiF thiazole 93.2 0.16 3.5E-06 43.0 4.9 35 7-41 21-56 (202)
437 PRK07417 arogenate dehydrogena 93.2 0.11 2.5E-06 46.5 4.2 32 9-40 2-33 (279)
438 KOG2304 3-hydroxyacyl-CoA dehy 93.2 0.11 2.3E-06 43.6 3.6 36 5-40 9-44 (298)
439 cd01483 E1_enzyme_family Super 93.2 0.17 3.6E-06 40.2 4.7 33 9-41 1-34 (143)
440 PF03446 NAD_binding_2: NAD bi 93.1 0.15 3.2E-06 41.5 4.5 32 8-39 2-33 (163)
441 PRK00066 ldh L-lactate dehydro 93.1 0.17 3.8E-06 46.0 5.3 36 5-40 4-41 (315)
442 TIGR02355 moeB molybdopterin s 93.1 0.16 3.4E-06 44.3 4.7 35 7-41 24-59 (240)
443 COG0446 HcaD Uncharacterized N 93.0 0.47 1E-05 45.0 8.5 44 164-214 64-107 (415)
444 PLN02353 probable UDP-glucose 93.0 0.12 2.6E-06 49.7 4.3 32 9-40 3-36 (473)
445 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.0 0.13 2.8E-06 50.1 4.5 33 8-40 6-38 (503)
446 PRK05690 molybdopterin biosynt 92.9 0.17 3.7E-06 44.2 4.7 35 7-41 32-67 (245)
447 PRK08328 hypothetical protein; 92.8 0.19 4E-06 43.6 4.8 35 7-41 27-62 (231)
448 cd05311 NAD_bind_2_malic_enz N 92.7 0.18 3.9E-06 43.5 4.6 34 7-40 25-61 (226)
449 PRK12549 shikimate 5-dehydroge 92.6 0.18 3.8E-06 45.3 4.5 32 8-39 128-160 (284)
450 TIGR01915 npdG NADPH-dependent 92.6 0.18 3.8E-06 43.4 4.4 31 9-39 2-33 (219)
451 cd00757 ThiF_MoeB_HesA_family 92.6 0.2 4.4E-06 43.3 4.8 35 7-41 21-56 (228)
452 PRK15057 UDP-glucose 6-dehydro 92.6 0.16 3.5E-06 47.7 4.4 31 9-40 2-32 (388)
453 cd01075 NAD_bind_Leu_Phe_Val_D 92.5 0.2 4.4E-06 42.3 4.6 32 8-39 29-60 (200)
454 PRK11730 fadB multifunctional 92.5 0.15 3.2E-06 52.1 4.4 33 8-40 314-346 (715)
455 PRK06223 malate dehydrogenase; 92.4 0.2 4.3E-06 45.6 4.7 33 8-40 3-36 (307)
456 TIGR02437 FadB fatty oxidation 92.4 0.16 3.5E-06 51.8 4.4 33 8-40 314-346 (714)
457 COG0771 MurD UDP-N-acetylmuram 92.3 0.19 4E-06 47.7 4.4 36 7-42 7-42 (448)
458 cd05293 LDH_1 A subgroup of L- 92.2 0.24 5.2E-06 45.1 4.9 34 7-40 3-38 (312)
459 PRK02472 murD UDP-N-acetylmura 92.2 0.22 4.7E-06 48.1 4.9 33 8-40 6-38 (447)
460 COG1250 FadB 3-hydroxyacyl-CoA 92.2 0.18 3.9E-06 45.3 4.0 32 8-39 4-35 (307)
461 TIGR03736 PRTRC_ThiF PRTRC sys 92.1 0.24 5.1E-06 43.0 4.6 36 6-41 10-56 (244)
462 PF13478 XdhC_C: XdhC Rossmann 92.1 0.16 3.5E-06 39.8 3.3 32 10-41 1-32 (136)
463 cd01339 LDH-like_MDH L-lactate 92.1 0.19 4.1E-06 45.6 4.1 31 10-40 1-32 (300)
464 PRK02006 murD UDP-N-acetylmura 92.1 0.23 4.9E-06 48.7 4.9 34 7-40 7-40 (498)
465 PRK08223 hypothetical protein; 92.0 0.27 5.8E-06 43.7 4.8 35 7-41 27-62 (287)
466 cd05291 HicDH_like L-2-hydroxy 92.0 0.23 5E-06 45.2 4.5 33 9-41 2-36 (306)
467 PRK00421 murC UDP-N-acetylmura 91.9 0.2 4.4E-06 48.5 4.4 34 7-40 7-41 (461)
468 COG1179 Dinucleotide-utilizing 91.9 0.22 4.8E-06 42.4 4.0 36 7-42 30-66 (263)
469 PRK09424 pntA NAD(P) transhydr 91.8 0.2 4.3E-06 48.5 4.1 34 7-40 165-198 (509)
470 cd00401 AdoHcyase S-adenosyl-L 91.8 0.23 5E-06 46.8 4.4 33 8-40 203-235 (413)
471 cd01485 E1-1_like Ubiquitin ac 91.8 0.28 6E-06 41.4 4.6 35 7-41 19-54 (198)
472 cd00755 YgdL_like Family of ac 91.8 0.3 6.4E-06 42.2 4.8 35 7-41 11-46 (231)
473 TIGR02441 fa_ox_alpha_mit fatt 91.8 0.21 4.6E-06 51.1 4.5 33 8-40 336-368 (737)
474 cd01492 Aos1_SUMO Ubiquitin ac 91.7 0.28 6.1E-06 41.3 4.5 35 7-41 21-56 (197)
475 PTZ00117 malate dehydrogenase; 91.7 0.29 6.2E-06 44.8 4.8 34 7-40 5-39 (319)
476 cd05191 NAD_bind_amino_acid_DH 91.7 0.4 8.7E-06 34.2 4.6 32 7-38 23-55 (86)
477 PRK04308 murD UDP-N-acetylmura 91.5 0.31 6.7E-06 47.0 5.2 33 8-40 6-38 (445)
478 PRK01368 murD UDP-N-acetylmura 91.5 0.26 5.6E-06 47.5 4.6 37 1-39 1-37 (454)
479 PRK12439 NAD(P)H-dependent gly 91.5 0.35 7.7E-06 44.7 5.3 38 1-39 1-38 (341)
480 TIGR01505 tartro_sem_red 2-hyd 91.4 0.26 5.5E-06 44.5 4.2 32 9-40 1-32 (291)
481 PRK01710 murD UDP-N-acetylmura 91.2 0.28 6.1E-06 47.4 4.5 33 8-40 15-47 (458)
482 PRK08306 dipicolinate synthase 91.2 0.34 7.3E-06 43.8 4.7 34 7-40 152-185 (296)
483 cd01484 E1-2_like Ubiquitin ac 91.2 0.36 7.8E-06 41.8 4.7 33 9-41 1-34 (234)
484 cd01078 NAD_bind_H4MPT_DH NADP 91.0 0.39 8.5E-06 40.3 4.7 33 7-39 28-61 (194)
485 cd01486 Apg7 Apg7 is an E1-lik 91.0 0.38 8.1E-06 42.9 4.6 33 9-41 1-34 (307)
486 PTZ00142 6-phosphogluconate de 90.9 0.27 5.8E-06 47.4 4.0 33 8-40 2-34 (470)
487 KOG4405 GDP dissociation inhib 90.9 0.29 6.4E-06 44.9 4.0 40 6-45 7-46 (547)
488 TIGR02853 spore_dpaA dipicolin 90.9 0.33 7.1E-06 43.6 4.3 34 7-40 151-184 (287)
489 PRK12548 shikimate 5-dehydroge 90.9 0.39 8.5E-06 43.2 4.8 32 8-39 127-159 (289)
490 PRK11154 fadJ multifunctional 90.8 0.29 6.2E-06 50.1 4.3 33 8-40 310-343 (708)
491 PRK04690 murD UDP-N-acetylmura 90.7 0.31 6.7E-06 47.3 4.3 33 8-40 9-41 (468)
492 PRK09496 trkA potassium transp 90.7 0.34 7.4E-06 46.8 4.6 32 9-40 2-33 (453)
493 PRK12771 putative glutamate sy 90.7 3 6.6E-05 41.6 11.4 32 8-39 268-300 (564)
494 PRK07502 cyclohexadienyl dehyd 90.6 0.39 8.5E-06 43.7 4.7 33 8-40 7-41 (307)
495 PRK07774 short chain dehydroge 90.6 0.49 1.1E-05 41.4 5.2 32 8-39 7-39 (250)
496 COG0287 TyrA Prephenate dehydr 90.6 0.45 9.7E-06 42.4 4.8 35 7-41 3-37 (279)
497 cd05290 LDH_3 A subgroup of L- 90.5 0.42 9.1E-06 43.3 4.7 32 9-40 1-34 (307)
498 PLN02695 GDP-D-mannose-3',5'-e 90.5 0.44 9.4E-06 44.7 5.0 36 5-40 19-55 (370)
499 PRK11199 tyrA bifunctional cho 90.5 0.4 8.7E-06 44.9 4.7 33 7-39 98-131 (374)
500 PLN02602 lactate dehydrogenase 90.5 0.49 1.1E-05 43.7 5.1 33 8-40 38-72 (350)
No 1
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=1e-48 Score=368.18 Aligned_cols=375 Identities=44% Similarity=0.770 Sum_probs=300.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVY 87 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (413)
+||+|||||++|+++|++|+++|++|+|||+....++.+++...++.++..+....+..+..++.++|+++.++.+.+++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 59999999999999999999999999999998765444556566666666666666778899999999999988887776
Q ss_pred EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG 167 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 167 (413)
...+.+.+...+.+.+.+..+.++..+.+.+.++.+++.+.+|. +..+....+++.+.+++++|..+++.|.+.+++.|
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~-l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g 159 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPN-IRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG 159 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCC-CcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence 77788877654445667777778888999999999999999998 55455566889999999999999999999999999
Q ss_pred CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCcc
Q 015088 168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247 (413)
Q Consensus 168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 247 (413)
++++++++|+++.. + ++.+.|.+.+++ +.+|.||+|+|+|+..+.+.+ +..+|+.+.++++..++.+......+
T Consensus 160 ~~~~~~~~V~~i~~--~--~~~~~v~~~~~~-i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (380)
T TIGR01377 160 ATVRDGTKVVEIEP--T--ELLVTVKTTKGS-YQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGSYGV 233 (380)
T ss_pred CEEECCCeEEEEEe--c--CCeEEEEeCCCE-EEeCEEEEecCcchHHHhhhc-ccCCCceEEEEEEEEEecCCccccCc
Confidence 99999999999988 6 456778887774 999999999999999888877 88899999999988887543221111
Q ss_pred ccCCCCCeEEEcC-CCceEecCCCCCCCcEEEecCCCCCCCCCCCCC---CCchhHHHHHHHHHhhcCCCCCCCCCeeec
Q 015088 248 AVGGDFPSFASYG-DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPW---GPGLLLDSLKEWIQGRFAGRVDSNGPVATQ 323 (413)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 323 (413)
. ..+|.+...+ ...+|.+|..+..+++.++...+...+++...+ ......+.+.+.+.+++|.+.+ .....|
T Consensus 234 ~--~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~--~~~~~~ 309 (380)
T TIGR01377 234 S--QAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNG--EPKKGE 309 (380)
T ss_pred c--CCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCC--Ccceee
Confidence 1 1367665443 235899998655565555443322223322211 1122688899999999999984 346789
Q ss_pred eeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccCCC
Q 015088 324 LCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPK 396 (413)
Q Consensus 324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~ 396 (413)
.|++++|||+.|+||++|.. +|+|+++||+|+|++++|.+|+++|++|+++++ ..+++.|+|+||.++++
T Consensus 310 ~~~~~~t~D~~piIg~~p~~--~~l~va~G~~g~G~~~~p~~g~~la~li~~~~~-~~~~~~f~~~Rf~~~~~ 379 (380)
T TIGR01377 310 VCMYTNTPDEHFVIDLHPKY--DNVVIGAGFSGHGFKLAPVVGKILAELAMKLKP-SYDLAIFSLNRFALKKK 379 (380)
T ss_pred EEEeccCCCCCeeeecCCCC--CCEEEEecCCccceeccHHHHHHHHHHHhcCCC-CCCccccChhhcccCCC
Confidence 99999999999999999988 999999999999999999999999999996665 67899999999998875
No 2
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.2e-49 Score=333.82 Aligned_cols=387 Identities=38% Similarity=0.642 Sum_probs=336.0
Q ss_pred CCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088 3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
.+....||+|||||+-|+++|++|+++|.+++|+|+-+.+...++|++.+++++..+.+..|..+..++.+.|.++..+.
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~ 82 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES 82 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
+..+....+.+.....+...+......++..++..+.+..+++++++|..+.+++.+.++....+|++++.+-+++++..
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 88776677777776666566777778888888888999999999999955888999999999999999999999999999
Q ss_pred HHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE 241 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~ 241 (413)
+...|+.++.+.+|+.+.. .+ .+..+.|+|.+|..+.|+.+|+|+|+|.+++++..+++.+|+.+.+-...+++...
T Consensus 163 ~~~~G~i~~dg~~v~~~~~--~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk~~~ 240 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKF--VDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWKTKK 240 (399)
T ss_pred HHHcCeEEecCcceeeEee--ccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhheeec
Confidence 9999999999999999885 32 24788999999998999999999999999999975689999999999999888665
Q ss_pred CCCCccccCCCCCeEEEcCCC--ceEecCCCCCCCcEEEecCCC---CCCCCCCCCCCCch-hHHHHHHHHHhhcCCCCC
Q 015088 242 GNEADYAVGGDFPSFASYGDP--YIYGTPSLEYPGLIKIALHGG---YPCDPDRRPWGPGL-LLDSLKEWIQGRFAGRVD 315 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~--~~y~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~~~~~~~p~~~~ 315 (413)
+.+..+..+..+++|.+.... ..|.+|..+..|.+.+.++.+ ...+|+...+.+.. .++.....++++.|.+.+
T Consensus 241 ~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~ 320 (399)
T KOG2820|consen 241 NMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDD 320 (399)
T ss_pred CCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccC
Confidence 544335555668888777666 789999999999999988766 45566666666654 566677777888899987
Q ss_pred CCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCC--cccccccccccccc
Q 015088 316 SNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQ--GVELQHFRISRFKE 393 (413)
Q Consensus 316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~--~~~~~~~~~~R~~~ 393 (413)
. .++...-|++..|||...+|+.+|+. .|+++++|.+||||.++|.+|+++|++++ +..+ ..+...|+.+||..
T Consensus 321 ~-~p~~t~~C~YT~TpD~~FviD~~P~~--~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~-~~~~e~~~d~~~f~~~rf~~ 396 (399)
T KOG2820|consen 321 R-SPINTKMCMYTDTPDANFVIDKHPQY--DNVFVGGGGSGHGFKFAPNIGKYLAEMAM-GDLSEEWVDAWRFREDRFES 396 (399)
T ss_pred C-CcceeeEEEeeCCCCcCeeeecCCCc--ccEEEecCCCCcceeecchHHHHHHHHhh-hcccccceehhhhhhhhccc
Confidence 4 78889999999999999999999999 89999999999999999999999999999 5553 66788888888876
Q ss_pred CC
Q 015088 394 NP 395 (413)
Q Consensus 394 ~~ 395 (413)
.+
T Consensus 397 ~~ 398 (399)
T KOG2820|consen 397 EA 398 (399)
T ss_pred cc
Confidence 54
No 3
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=9.1e-46 Score=347.69 Aligned_cols=368 Identities=36% Similarity=0.624 Sum_probs=288.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
++||+|||||++|+++|++|+++|++|+|||++...++.+++++..+.++..+. ...+..+..++.++|.++.+..+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999999999999876545566666666654433 3456788899999999999888877
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
++...+.+.+.....+.+.+..+.+++.+++.+.++.+++.+++|. +..+....+++.+.+++++|.+++..+.+.+.+
T Consensus 83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~-l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~ 161 (376)
T PRK11259 83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLARE 161 (376)
T ss_pred cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-CcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence 6677788877655444556667777888999999999999999998 654556678889999999999999999999999
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCC
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~ 245 (413)
.|++++++++|+++.. + ++.+.|++++|. +++|+||+|+|+|+..+++++ .+|+.+.+++++.++.++.
T Consensus 162 ~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~a~~vV~A~G~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~--- 230 (376)
T PRK11259 162 AGAELLFNEPVTAIEA--D--GDGVTVTTADGT-YEAKKLVVSAGAWVKDLLPPL---ELPLTPVRQVLAWFQADGR--- 230 (376)
T ss_pred CCCEEECCCEEEEEEe--e--CCeEEEEeCCCE-EEeeEEEEecCcchhhhcccc---cCCceEEEEEEEEEecCCc---
Confidence 9999999999999988 6 456788888885 999999999999999887653 5789999999988874321
Q ss_pred ccccCCCCCeEEE--cCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCC--CCchhHHHHHHHHHhhcCCCCCCCCCe
Q 015088 246 DYAVGGDFPSFAS--YGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPW--GPGLLLDSLKEWIQGRFAGRVDSNGPV 320 (413)
Q Consensus 246 ~~~~~~~~~~~~~--~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~p~~~~~~~~~ 320 (413)
+.....+|.+.. .++..+|.+|..+..+++.+++..+. ..++...+. ......+.+.+.+.++||.+.+ +.
T Consensus 231 -~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~---~~ 306 (376)
T PRK11259 231 -YSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP---CL 306 (376)
T ss_pred -cCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc---cc
Confidence 111112565432 22334788888664444444433211 112221111 1123688999999999998773 67
Q ss_pred eeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088 321 ATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE 393 (413)
Q Consensus 321 ~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 393 (413)
..|+|+|++|||+.|+||++|.. +|+|+++||+|+|++++|.+|+.+|++|.++++ ..+++.|+|+||..
T Consensus 307 ~~~~g~~~~t~D~~P~ig~~~~~--~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~~-~~~~~~~~~~Rf~~ 376 (376)
T PRK11259 307 RGAACTYTNTPDEHFIIDTLPGH--PNVLVASGCSGHGFKFASVLGEILADLAQDGTS-DFDLSPFSLSRFAA 376 (376)
T ss_pred cceEEecccCCCCCceeecCCCC--CCEEEEecccchhhhccHHHHHHHHHHHhcCCC-CCCcCccCcccccC
Confidence 78999999999999999999987 999999999999999999999999999996665 67899999999963
No 4
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=4.8e-45 Score=345.62 Aligned_cols=368 Identities=20% Similarity=0.225 Sum_probs=284.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~-~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
..++||+|||||++|+++|++|+++ |. +|+|||++..+ .++|+.++++++..+..+.+..+...+.+.|+++.++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~--~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~ 105 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG--GGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDL 105 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc--CcccccccceeeecccCccccHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999995 95 99999998654 45677778888776655556678888999999999988
Q ss_pred CCee-EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCC-----CCeEEEEecCCceeChHH
Q 015088 83 GYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIP-----ENWVGVATELGGVIKPTK 154 (413)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 154 (413)
+.++ +...+.+.+...+ .+.+.+..+..+..|++.+.++.+++.+++|. +..+ ....+++.+.++.++|..
T Consensus 106 ~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~~~~~~~~~~~ga~~~~~~g~v~p~~ 184 (407)
T TIGR01373 106 NYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPI-LDFSPDARFPVVGGLLQRRGGTARHDA 184 (407)
T ss_pred CCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCC-CccccccccceeEEEEcCCCCcCCHHH
Confidence 8776 5567887776543 23345666667778999999999999999998 5533 234678888899999999
Q ss_pred HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088 155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV 234 (413)
Q Consensus 155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~ 234 (413)
+...|.+.+.+.|++++++++|++++. .+++..+.|++.+|. +.++.||+|+|+|+..+.+.+ ++.+|+.+.++++
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~~~~v~t~~g~-i~a~~vVvaagg~~~~l~~~~-g~~~~~~~~~~~~ 260 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIR--RDGGRVIGVETTRGF-IGAKKVGVAVAGHSSVVAAMA-GFRLPIESHPLQA 260 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEeCCce-EECCEEEECCChhhHHHHHHc-CCCCCcCcccceE
Confidence 999999999999999999999999976 533345668888886 999999999999998877765 8888999999887
Q ss_pred EEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CCCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 015088 235 CYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR 313 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 313 (413)
+... + .. .. .+.+....+..+|++|..+ |.++++... ...... .. ......+.+.+.+.+++|.+
T Consensus 261 ~~~~--~-~~-~~-----~~~~~~~~~~~~y~~p~~~--g~~~ig~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~P~l 326 (407)
T TIGR01373 261 LVSE--P-LK-PI-----IDTVVMSNAVHFYVSQSDK--GELVIGGGIDGYNSYA--QR-GNLPTLEHVLAAILEMFPIL 326 (407)
T ss_pred EEec--C-CC-CC-----cCCeEEeCCCceEEEEcCC--ceEEEecCCCCCCccC--cC-CCHHHHHHHHHHHHHhCCCc
Confidence 6443 1 11 11 2222222334478888754 434444321 111100 00 11226788999999999999
Q ss_pred CCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088 314 VDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE 393 (413)
Q Consensus 314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 393 (413)
.+. .+.+.|+|+|++|+|+.|+||++|. +|+|+++|++|+|+++||++|+++|++|.++++ ..+++.|+|+||..
T Consensus 327 ~~~-~~~~~w~G~~~~t~D~~PiIg~~~~---~gl~~a~G~~g~G~~~ap~~G~~la~li~~~~~-~~~~~~f~~~Rf~~ 401 (407)
T TIGR01373 327 SRV-RMLRSWGGIVDVTPDGSPIIGKTPL---PNLYLNCGWGTGGFKATPASGTVFAHTLARGEP-HDINAPFTLDRFHS 401 (407)
T ss_pred CCC-CeEEEeccccccCCCCCceeCCCCC---CCeEEEeccCCcchhhchHHHHHHHHHHhCCCC-CCCCcccCHhHhcc
Confidence 864 6778999999999999999999973 899999999999999999999999999996665 56789999999987
Q ss_pred CCCCC
Q 015088 394 NPKGN 398 (413)
Q Consensus 394 ~~~~~ 398 (413)
++..+
T Consensus 402 ~~~~~ 406 (407)
T TIGR01373 402 GRLID 406 (407)
T ss_pred CCccc
Confidence 66554
No 5
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=4.5e-43 Score=333.61 Aligned_cols=358 Identities=16% Similarity=0.208 Sum_probs=266.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC--------------------------
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-------------------------- 62 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~-------------------------- 62 (413)
||+|||||++|+++|++|+++|++|+|+|+....+ .++|..+++.++..+..+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~-~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA-LETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD 80 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh-hhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCC
Confidence 79999999999999999999999999999985432 456666666655543211
Q ss_pred --------------------------ChHHHHHHHHHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhC
Q 015088 63 --------------------------YYHPMVLESCLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKN 113 (413)
Q Consensus 63 --------------------------~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~ 113 (413)
.+..+...+.+.|.++.++.++++. ...+.+.+...+ .+.+.+..+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~ 160 (416)
T PRK00711 81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEA 160 (416)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHc
Confidence 1234455678889999888888764 456777665443 23456666777889
Q ss_pred CCCccccCHHHHHHHcCCcccC--CCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEE
Q 015088 114 SVPHQVLDCRQVLEKYSGRIEI--PENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT 191 (413)
Q Consensus 114 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~ 191 (413)
+++.++++.+++.+.+|. +.. +....+++.+.++.++|..++..|.+.+++.|++|+++++|++++. ++ +..+.
T Consensus 161 g~~~~~l~~~e~~~~~P~-l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~ 236 (416)
T PRK00711 161 GVPYELLDRDELAAVEPA-LAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV--EG-GRITG 236 (416)
T ss_pred CCCceecCHHHHHHhCCC-ccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cC-CEEEE
Confidence 999999999999999987 431 3445678899999999999999999999999999999999999987 62 23345
Q ss_pred EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCC
Q 015088 192 VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLE 271 (413)
Q Consensus 192 v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~ 271 (413)
|++++++ +++|+||+|+|.|+..+++.+ +..+|+.|.+++++.+..+... ..|..........+..+..+
T Consensus 237 v~t~~~~-~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p~rg~~~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~~ 306 (416)
T PRK00711 237 VQTGGGV-ITADAYVVALGSYSTALLKPL-GVDIPVYPLKGYSLTVPITDED--------RAPVSTVLDETYKIAITRFD 306 (416)
T ss_pred EEeCCcE-EeCCEEEECCCcchHHHHHHh-CCCcccCCccceEEEEecCCCC--------CCCceeEEecccCEEEeecC
Confidence 7777664 999999999999999988877 8888999999987655432211 12222111111122333332
Q ss_pred CCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEE
Q 015088 272 YPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVA 351 (413)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~ 351 (413)
+.++.++.......+.. .+ ....+.+.+.+.++||.+.+. .+...|+|+|++|+|+.|+||++|. +|+|++
T Consensus 307 -~~~~iG~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~t~D~~PiIG~~~~---~gl~~a 377 (416)
T PRK00711 307 -DRIRVGGMAEIVGFDLR---LD-PARRETLEMVVRDLFPGGGDL-SQATFWTGLRPMTPDGTPIVGATRY---KNLWLN 377 (416)
T ss_pred -CceEEEEEEEecCCCCC---CC-HHHHHHHHHHHHHHCCCcccc-cccceeeccCCCCCCCCCEeCCcCC---CCEEEe
Confidence 23333332111111111 11 226778888999999998865 6778999999999999999999873 899999
Q ss_pred eCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccc
Q 015088 352 GGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF 391 (413)
Q Consensus 352 ~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~ 391 (413)
+||+|+|+++||++|+++|++|+++.+ ..+++.|+|+||
T Consensus 378 ~G~~g~G~~~ap~~g~~la~li~g~~~-~~~~~~f~~~Rf 416 (416)
T PRK00711 378 TGHGTLGWTMACGSGQLLADLISGRKP-AIDADDLSVARY 416 (416)
T ss_pred cCCchhhhhhhhhHHHHHHHHHcCCCC-CCCccccCccCC
Confidence 999999999999999999999995554 678999999998
No 6
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=9.4e-40 Score=309.79 Aligned_cols=348 Identities=14% Similarity=0.136 Sum_probs=253.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC--------------------------
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-------------------------- 61 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-------------------------- 61 (413)
+||+|||||++|+++|++|+++|++|+|||++...+ .++|..+++.+......
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA-METSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNP 80 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC-cCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecC
Confidence 499999999999999999999999999999987543 45666666666432100
Q ss_pred ------------------------CChHHHHHHHHHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhCC
Q 015088 62 ------------------------DYYHPMVLESCLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKNS 114 (413)
Q Consensus 62 ------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g 114 (413)
.....+..++.+.|.++.++.++++. ...|.+.+.... .+.+.+..+..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g 160 (410)
T PRK12409 81 KPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGG 160 (410)
T ss_pred CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcC
Confidence 01235666778889999988888774 457777665432 223456666777788
Q ss_pred CCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc
Q 015088 115 VPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT 194 (413)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~ 194 (413)
++.+.++++++.+++|. +. .....+++.+.++++++..++..|.+.+++.|++++++++|+++.. + ++.+.+.+
T Consensus 161 ~~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~--~--~~~~~v~~ 234 (410)
T PRK12409 161 LERRAVTPEEMRAIEPT-LT-GEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKT--D--GGGVVLTV 234 (410)
T ss_pred CCeEEcCHHHHHHhCCC-Cc-cccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEE
Confidence 88899999999999987 44 3345688889999999999999999999999999999999999987 6 34555543
Q ss_pred CCC-----cEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEE-EcCCCceEecC
Q 015088 195 SNG-----EKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFA-SYGDPYIYGTP 268 (413)
Q Consensus 195 ~~g-----~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~p 268 (413)
.++ .+++||+||+|+|+|+..+.+.+ +..+++.+.+++++.+++++.... ...|.+. ...+.+++..+
T Consensus 235 ~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p~~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~ 308 (410)
T PRK12409 235 QPSAEHPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYPVKGYSITVNLDDEASR-----AAAPWVSLLDDSAKIVTSR 308 (410)
T ss_pred EcCCCCccceEecCEEEECCCcChHHHHHHh-CCCCccccCCceEEEeecCCcccc-----ccCCceeeeecCCcEEEEe
Confidence 322 25999999999999999998876 788899999999887764332110 1134322 12222222222
Q ss_pred CCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCE
Q 015088 269 SLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDV 348 (413)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~ 348 (413)
. ..+.++.+++......+++ .+. +..+.+.+++.+++|.+.+. .+ ..|+|+|++|+|+.|+||+.+ . +|+
T Consensus 309 ~-~~~~~~igg~~~~~~~~~~---~~~-~~~~~l~~~~~~~~P~l~~~-~~-~~w~G~r~~t~D~~PiiG~~~-~--~~l 378 (410)
T PRK12409 309 L-GADRFRVAGTAEFNGYNRD---IRA-DRIRPLVDWVRRNFPDVSTR-RV-VPWAGLRPMMPNMMPRVGRGR-R--PGV 378 (410)
T ss_pred c-CCCcEEEEEEEEecCCCCC---CCH-HHHHHHHHHHHHhCCCCCcc-cc-ceecccCCCCCCCCCeeCCCC-C--CCE
Confidence 2 1123334443211111111 111 26788889999999999864 33 479999999999999999976 3 899
Q ss_pred EEEeCCCCCCCccchHHHHHHHHHHhcCCC
Q 015088 349 VVAGGFSGHGFKMAPAVGRILADLVLSGEA 378 (413)
Q Consensus 349 ~~~~G~~~~G~~~a~~~a~~la~~i~~g~~ 378 (413)
|+++|++++|+++||++|+++|++|+++.+
T Consensus 379 ~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~ 408 (410)
T PRK12409 379 FYNTGHGHLGWTLSAATADLVAQVVAQKLP 408 (410)
T ss_pred EEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence 999999999999999999999999985443
No 7
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=7.3e-41 Score=312.76 Aligned_cols=342 Identities=31% Similarity=0.472 Sum_probs=267.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc---cCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT---YPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
||+|||||++|+++|++|+++|++|+|||++... .++|....+.++.. .....+..+...+.+.|+++..+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~--~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG--SGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP 78 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT--SSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc--ccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence 7999999999999999999999999999999544 46677778888776 555577889999999999999998877
Q ss_pred eEE-eeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 86 VYF-KAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 86 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
..+ ..+.+.+.... .+.+++..+.++..+.+.+.++.+++.+.+|. +. +....+++.+.+++++|..+++.|.+.
T Consensus 79 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 79 VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPF-LN-PRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT-SS-TTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcc-cc-cchhhhhcccccccccccchhhhhHHH
Confidence 644 66777776432 23456777788888999999999999999997 55 566778999999999999999999999
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE 241 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~ 241 (413)
+++.|++++++++|++|.. + ++.+. |++.+|+ +.||+||+|+|.|+..+++.+ +..+++.+.+++++.++...
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~--~--~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 230 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDV--D--GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL-GLDLPLRPVRGQVLVLEPPE 230 (358)
T ss_dssp HHHTT-EEEESEEEEEEEE--E--TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT-TTSSTEEEEEEEEEEEEGCC
T ss_pred HHHhhhhccccccccchhh--c--ccccccccccccc-cccceeEecccccceeeeecc-cccccccccceEEEEEccCC
Confidence 9999999999999999998 7 45666 9999998 999999999999999988887 88789999999999888433
Q ss_pred CCCCccccCCCCCeE-E---EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCC-c-h---hHHHHHHHHHhhcCC
Q 015088 242 GNEADYAVGGDFPSF-A---SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGP-G-L---LLDSLKEWIQGRFAG 312 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~-~---~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~l~~~~~~~~p~ 312 (413)
... ..+.. . .......|+.|.. ++++.+.........+....... + + ..+.+++.+.+++|.
T Consensus 231 ~~~-------~~~~~~~~~~~~~~~~~~~~p~~--g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~ 301 (358)
T PF01266_consen 231 SPL-------APAILFPPVIFGPSDGVYIRPRP--GGVLIGTADGNYDPGPSPEDSSGEDPDVDEEIDELLERLARLLPG 301 (358)
T ss_dssp SGS-------SSEEEEEEECESSCTEEEEEEET--TEEEEEESECEEEESSSHHHHSHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred ccc-------ccccccccccccccccceecccc--cccccccccccccccccccccccccccccHHHHHhHHHHHHHHHH
Confidence 211 01111 1 1122456777776 23333322211111121111000 0 0 146899999999999
Q ss_pred CCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088 313 RVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADL 372 (413)
Q Consensus 313 ~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~ 372 (413)
+.+. .+...|+|+|++|+|+.|+||++|.. +|+|+++|++|+|++++|++|+++|++
T Consensus 302 l~~~-~v~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 302 LGDA-EVVRSWAGIRPFTPDGRPIIGELPGS--PNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp GGGS-EEEEEEEEEEEEETTSECEEEEESSE--EEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred hhhc-cccccccceeeeccCCCeeeeecCCC--CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 9864 66779999999999999999999988 999999999999999999999999986
No 8
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=4.4e-40 Score=327.79 Aligned_cols=359 Identities=18% Similarity=0.177 Sum_probs=257.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC--ChHHHHH----HHHHHHHHHHH
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED--YYHPMVL----ESCLLWEQAQS 80 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~--~~~~l~~----~~~~~~~~~~~ 80 (413)
.+||+|||||++|+++|++|+++|++|+|||+....+ .++|..+.|.+....... ...++.. .+.++|.++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~- 337 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA-QGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP- 337 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc-ccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 3699999999999999999999999999999986443 356666666666544322 2233333 4667788776
Q ss_pred HhCCee-EEeeceeeeCCCCh--hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088 81 EIGYKV-YFKAHQFDMGPSEN--KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVS 157 (413)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+.+.++ +..+|.+.+...+. +.+.+..+.... +...+.++.+++.+..+. +....+++.+.+++++|..++.
T Consensus 338 ~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~----~~~~~g~~~p~~G~v~p~~l~~ 412 (662)
T PRK01747 338 AAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGL----PVPCGGIFYPQGGWLCPAELCR 412 (662)
T ss_pred hcCCCCCCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCC----CCCCCcEEeCCCCeeCHHHHHH
Confidence 445544 33456666554322 122222222211 223578888888887664 3456788999999999999999
Q ss_pred HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEE
Q 015088 158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYW 237 (413)
Q Consensus 158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~ 237 (413)
.|.+.+++ |++++++++|+++.. . ++.|.|.+++|..+++|.||+|+|.|+..+... ..+|+.++||+++.+
T Consensus 413 aL~~~a~~-Gv~i~~~~~V~~i~~--~--~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~---~~lpl~p~RGqv~~~ 484 (662)
T PRK01747 413 ALLALAGQ-QLTIHFGHEVARLER--E--DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT---AHLPLYSVRGQVSHL 484 (662)
T ss_pred HHHHhccc-CcEEEeCCEeeEEEE--e--CCEEEEEECCCcEEECCEEEECCCCCccccccc---cCCCcccccceEEee
Confidence 99999999 999999999999987 6 456788888887678999999999999877653 257899999999877
Q ss_pred EecCCCCCccccCCCCCeEEEcCCCceEecC-CCCCCCcEEEec-CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCC--
Q 015088 238 RIKEGNEADYAVGGDFPSFASYGDPYIYGTP-SLEYPGLIKIAL-HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR-- 313 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~-- 313 (413)
+.+.... . .+..... ..|++| ..+ |.+.+|. ....+.+ ..... +..+.+.+.+.+++|.+
T Consensus 485 ~~~~~~~----~---~~~~~~~---~~Y~~p~~~~--g~~~iGat~~~~~~~---~~~~~-~~~~~~~~~l~~~~P~l~~ 548 (662)
T PRK01747 485 PTTPALS----A---LKQVLCY---DGYLTPQPAN--GTHCIGASYDRDDTD---TAFRE-ADHQENLERLAECLPQALW 548 (662)
T ss_pred cCCcccc----c---cCceeEC---CceeCCCCCC--CceEeCcccCCCCCC---CCCCH-HHHHHHHHHHHHhCCCchh
Confidence 6332110 0 1112222 258888 443 5444443 2211111 11111 25667888899999976
Q ss_pred ---CCCCCCeeeceeeeeecCCCCeEecC----------------------CCCCCCCCEEEEeCCCCCCCccchHHHHH
Q 015088 314 ---VDSNGPVATQLCMYSITPDEDFVIDF----------------------LGGEFGEDVVVAGGFSGHGFKMAPAVGRI 368 (413)
Q Consensus 314 ---~~~~~~~~~~~g~~~~t~d~~p~ig~----------------------~~~~~~~~~~~~~G~~~~G~~~a~~~a~~ 368 (413)
.+. .+...|+|+|++|+|+.|+||+ +|.. +|+|+++|+||+|+++||++|++
T Consensus 549 ~~~~~~-~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~--~gl~v~~G~gs~Gl~~ap~~a~~ 625 (662)
T PRK01747 549 AKEVDV-SALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRL--PGLYVAGALGSRGLCSAPLGAEL 625 (662)
T ss_pred hhccCc-cccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCC--CCeEEEecccccHHHHHHHHHHH
Confidence 333 5678999999999999999999 4545 89999999999999999999999
Q ss_pred HHHHHhcCCCCccc---cccccccccccCCCCCCc
Q 015088 369 LADLVLSGEAQGVE---LQHFRISRFKENPKGNVK 400 (413)
Q Consensus 369 la~~i~~g~~~~~~---~~~~~~~R~~~~~~~~~~ 400 (413)
||++|+ |++.+++ ++.|+|+||...++.+.|
T Consensus 626 lA~li~-g~~~p~~~~~~~~~~p~Rf~~r~l~~~~ 659 (662)
T PRK01747 626 LASQIE-GEPLPLERDLLAALHPNRFWVRKLLKGK 659 (662)
T ss_pred HHHHHh-CCCCCCCHHHHHhhChHHHHHHHHhcCC
Confidence 999998 6654443 688999999988776554
No 9
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=1.5e-39 Score=311.28 Aligned_cols=350 Identities=17% Similarity=0.159 Sum_probs=246.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecc----------cCCCChHHHHHHH-
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRAT----------YPEDYYHPMVLES- 71 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~----------~~~~~~~~l~~~~- 71 (413)
+.++||+|||||++|+++|++|+++ |.+|+|||++..+ .++|..++|.+... +.......+...+
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g--~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 99 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG--AGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASE 99 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc--cccccccCccccccccCHHHHHHhhCHHHHHHHHHHHH
Confidence 3468999999999999999999998 8999999998654 45666666654321 1111222333333
Q ss_pred --HHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEec
Q 015088 72 --CLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATE 145 (413)
Q Consensus 72 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (413)
...+.++.++.++++. ...+.+.....+ ...+++..+.++..|++ +++++.+++.++++. +....+++.+
T Consensus 100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~----~~~~~g~~~~ 175 (460)
T TIGR03329 100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS----ARHLEGFYSP 175 (460)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC----CcceEEEEeC
Confidence 4444556666777763 446766655332 23455666677778876 589999999998875 3455689999
Q ss_pred CCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
.+++++|.+++..|.+.+++.|++|+++++|++|+. . +.+.|+|.+|+ ++||+||+|+|+|+..+++.+ + .
T Consensus 176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~---~~~~v~t~~g~-v~A~~VV~Atga~s~~l~~~~-~--~ 246 (460)
T TIGR03329 176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G---QPAVVRTPDGQ-VTADKVVLALNAWMASHFPQF-E--R 246 (460)
T ss_pred CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C---CceEEEeCCcE-EECCEEEEcccccccccChhh-c--C
Confidence 999999999999999999999999999999999976 4 45678888886 999999999999998887765 3 3
Q ss_pred ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CC----CCCCCCCCCCCchhHH
Q 015088 226 PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GY----PCDPDRRPWGPGLLLD 300 (413)
Q Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 300 (413)
++.+++++++..+..+........ .....+........|+++..+ |-+.++... .. ..++... ......+
T Consensus 247 ~~~p~~~~~~~t~pl~~~~~~~~~-~~~~~~~d~~~~~~y~r~~~d--grll~G~~~~~~~~~~~~~~~~~--~~~~~~~ 321 (460)
T TIGR03329 247 SIAIVSSDMVITEPAPDLLAATGL-DHGTSVLDSRIFVHYYRSTPD--GRLMLGKGGNTFAYGGRMLPVFN--QPSPYEA 321 (460)
T ss_pred eEEEeccceEecCCCcHHHHhhcC-CCCceEecchhhhhheeECCC--CcEEEcCCccccccCcccccccC--CchHHHH
Confidence 566677776655421110000000 000112121222247777654 433443211 11 1111111 1122467
Q ss_pred HHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCC
Q 015088 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGE 377 (413)
Q Consensus 301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~ 377 (413)
.|.+.+.++||.+.+. ++.+.|+|++++|+|+.|+||+++.. +|+|+++||+|+|++++|++|+++|++|++++
T Consensus 322 ~l~~~~~~~fP~L~~~-~i~~~W~G~~~~t~D~~P~iG~~~~~--~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 322 LLTRSLRKFFPALAEV-PIAASWNGPSDRSVTGLPFFGRLNGQ--PNVFYGFGYSGNGVAPSRMGGQILSSLVLGLD 395 (460)
T ss_pred HHHHHHHHhCCCcCCC-eeeEEEeceeCCCCCCCceeeeecCC--CCEEEEeCcCCCChhHHHHHHHHHHHHhcCCC
Confidence 8999999999999875 67789999999999999999999876 89999999999999999999999999998443
No 10
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=297.87 Aligned_cols=367 Identities=28% Similarity=0.366 Sum_probs=269.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC----CChHHHHHHHHHHHHHHHHH
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE----DYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~ 81 (413)
.++||+|||||++|+++||+|+++|.+|+|+|+....+ +++..+++.+...+.. .....+...+..+|+.+...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEE 80 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC--cchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988764 4555555555444433 24667788889999999888
Q ss_pred hCCee-EEeeceeeeCCCCh----hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088 82 IGYKV-YFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV 156 (413)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
..... +...+.+.+..... .......+..+......+.++..+..+..|. +..+....+++.+..+.++|..++
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~a~~~~~~~~~~p~~~~ 159 (387)
T COG0665 81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPA-LGPDFVCGGLFDPTGGHLDPRLLT 159 (387)
T ss_pred hCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCC-CCcccceeeEecCCCCcCCHHHHH
Confidence 76553 44455554443332 1234444445555544467888888888887 554545678999999999999999
Q ss_pred HHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcC-CccceeEEEEEE
Q 015088 157 SMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITG-LELPIQAVETTV 234 (413)
Q Consensus 157 ~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g-~~~~~~~~~g~~ 234 (413)
+.+.+.+++.| ..+..++.|..+.. . + ..+.|.|.+|+ +.|++||+|+|.|+..+.... + +.+++.|.++++
T Consensus 160 ~~l~~~~~~~G~~~~~~~~~~~~~~~--~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~-~~~~~~~~p~~~~~ 233 (387)
T COG0665 160 RALAAAAEELGVVIIEGGTPVTSLER--D-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATL-GELPLPLRPVRGQA 233 (387)
T ss_pred HHHHHHHHhcCCeEEEccceEEEEEe--c-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhc-CCCcCccccccceE
Confidence 99999999999 56666889988877 4 3 78899999998 999999999999999998877 6 678899999999
Q ss_pred EEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCC--CCCCCCCCCCchhHHHHHHHHHhhcCC
Q 015088 235 CYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYP--CDPDRRPWGPGLLLDSLKEWIQGRFAG 312 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~p~ 312 (413)
+.+..++...... ..+..........|++|..+ +.+.++...... .+.+.... +.....+.+.+.+++|.
T Consensus 234 ~~~~~~~~~~~~~----~~~~~~~~~~~~~y~~~~~~--g~~~~g~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~P~ 305 (387)
T COG0665 234 LTTEPPEGLLADG----LAPVVLVVDDGGGYIRPRGD--GRLRVGGTDEEGGDDPSDPERE--DLVIAELLRVARALLPG 305 (387)
T ss_pred EEecCCCcccccc----ccceEEEecCCceEEEEcCC--CcEEEeecccccCCCCccccCc--chhHHHHHHHHHHhCcc
Confidence 9887544221100 01112222334478888743 444443321111 12211111 00356899999999999
Q ss_pred CCCCCCCeeeceeeeeec-CCCCeEecC-CCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccc
Q 015088 313 RVDSNGPVATQLCMYSIT-PDEDFVIDF-LGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390 (413)
Q Consensus 313 ~~~~~~~~~~~~g~~~~t-~d~~p~ig~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R 390 (413)
+.+. .+...|+|.|+.| ||+.|+||+ .+ . +|+|+++||+++|++++|++|+++|++|.++.. ..+...+.+.|
T Consensus 306 l~~~-~~~~~w~g~~~~t~pd~~P~iG~~~~-~--~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~~~-~~~~~~~~~~~ 380 (387)
T COG0665 306 LADA-GIEAAWAGLRPPTTPDGLPVIGRAAP-L--PNLYVATGHGGHGFTLAPALGRLLADLILGGEP-ELDLRPLLLDR 380 (387)
T ss_pred cccc-ccceeeeccccCCCCCCCceeCCCCC-C--CCEEEEecCCCcChhhccHHHHHHHHHHcCCCC-CCCcccccccc
Confidence 9875 5677999999987 999999995 77 7 999999999999999999999999999994444 66777788777
Q ss_pred cccC
Q 015088 391 FKEN 394 (413)
Q Consensus 391 ~~~~ 394 (413)
|...
T Consensus 381 f~~~ 384 (387)
T COG0665 381 FAPG 384 (387)
T ss_pred cccc
Confidence 5543
No 11
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-38 Score=287.86 Aligned_cols=370 Identities=19% Similarity=0.257 Sum_probs=292.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 84 (413)
...||+|||||..|+++||+|+++|.+..+++..... .+++++...+.....+.... ...+...+...+.+++.+.+.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l-tsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL-TSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeee-ccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 3589999999999999999999999995555554443 24566666666555344333 344556677788899999988
Q ss_pred ee-EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088 85 KV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT 161 (413)
Q Consensus 85 ~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (413)
.. +.+.|++.+.... .+.++++......++.+.+.+++++..+++|. ++.++...++|.|.++.+||..+|++|..
T Consensus 117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL-Ln~d~v~g~Ly~P~DG~~DP~~lC~ala~ 195 (856)
T KOG2844|consen 117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL-LNVDDVYGGLYSPGDGVMDPAGLCQALAR 195 (856)
T ss_pred CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc-cchhHheeeeecCCCcccCHHHHHHHHHH
Confidence 76 7788888887543 34566777777889999999999999999998 88889999999999999999999999999
Q ss_pred HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088 162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE 241 (413)
Q Consensus 162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~ 241 (413)
.+.+.|+.|++++.|++|.. .+ ++.+.|.|..|. |++.+||+|+|.|+..+-.+. +..+|+.|+..++++.+..+
T Consensus 196 ~A~~~GA~viE~cpV~~i~~--~~-~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~-gvkvPL~p~~H~YvvT~~Ie 270 (856)
T KOG2844|consen 196 AASALGALVIENCPVTGLHV--ET-DKFGGVETPHGS-IETECVVNAAGVWAREVGAMA-GVKVPLVPMHHAYVVTSRIE 270 (856)
T ss_pred HHHhcCcEEEecCCcceEEe--ec-CCccceeccCcc-eecceEEechhHHHHHhhhhc-CCcccceeeeeeEEEecccC
Confidence 99999999999999999987 53 356699999998 999999999999998777665 89999999999998877544
Q ss_pred CCCCccccCCCCC-eEEEcCCCceEecCCCCCCCcEEEecCCCCCC----CCCC--CCCCC-chhHHHHHHHHHhhcCCC
Q 015088 242 GNEADYAVGGDFP-SFASYGDPYIYGTPSLEYPGLIKIALHGGYPC----DPDR--RPWGP-GLLLDSLKEWIQGRFAGR 313 (413)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~----~~~~--~~~~~-~~~~~~l~~~~~~~~p~~ 313 (413)
+.. + ++ .+..+.+..+|++...+ +.+.+++..+... .+.. ..+++ .+........+..+.|.+
T Consensus 271 Gi~----s---~t~p~irD~DgSvylR~~~~--gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l 341 (856)
T KOG2844|consen 271 GVS----S---LTRPNIRDLDGSVYLRQQGD--GILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVL 341 (856)
T ss_pred Ccc----C---CCccceecccceEEEEecCC--ceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchh
Confidence 321 1 22 24455566788876653 5555544222111 0100 00111 115567778888899999
Q ss_pred CCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088 314 VDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE 393 (413)
Q Consensus 314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 393 (413)
.+. .+...-+|.-.+|||..|++|+.|.. .|.|+++|+|+.|++.+-++|+.++++|.+|++ +.|+..|++.||..
T Consensus 342 ~k~-~i~~~v~gpe~ftPD~~p~mGe~p~~--~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p-~~d~~~~D~~Rf~~ 417 (856)
T KOG2844|consen 342 EKA-GIKSLVNGPETFTPDHLPIMGESPEV--RGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP-PLDVHELDLRRFGK 417 (856)
T ss_pred hhc-CccceecCccccCCccccccCCCccc--cceEEeecCCccceeccCchhHHHHHHhhcCCC-CccchhccHHHhhh
Confidence 975 66667889999999999999999999 999999999999999999999999999999999 78999999999987
Q ss_pred CC
Q 015088 394 NP 395 (413)
Q Consensus 394 ~~ 395 (413)
..
T Consensus 418 ~~ 419 (856)
T KOG2844|consen 418 LQ 419 (856)
T ss_pred hh
Confidence 53
No 12
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=264.40 Aligned_cols=378 Identities=20% Similarity=0.242 Sum_probs=284.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHH
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (413)
.++||+|||||..|+++|+.|.++ |++|+|+|+++.- ..+++.-+.|.+...+.-+...++...+.++++...+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty-tqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY-TQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH 163 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc-cccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence 379999999999999999999874 7999999998754 23444445566777777777788888888888888777
Q ss_pred hCC------ee-EEeeceeeeCCCC-hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEE-EEecCCceeCh
Q 015088 82 IGY------KV-YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVG-VATELGGVIKP 152 (413)
Q Consensus 82 ~~~------~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (413)
+++ ++ +.+.|.+.+..++ .+.++...+...+.|...+.++++++.+++|+ ++......+ .-....|++||
T Consensus 164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPw-lntegVaLa~lG~e~EGwfdp 242 (509)
T KOG2853|consen 164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPW-LNTEGVALASLGVEKEGWFDP 242 (509)
T ss_pred hccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCc-ccccceeeeecccccccccCH
Confidence 764 23 5678888877654 44567777778889999999999999999999 775554443 44567899999
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecc---------cCC---------CeEEEEcCCC--cEEEcCEEEEcCCCC
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD---------AVK---------GGVTVVTSNG--EKFWGKKCVVTAGAW 212 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~---------~~~---------~~~~v~~~~g--~~i~ad~VV~A~G~~ 212 (413)
-.+...+++.+...|+.+. +-+|+.++. + |++ .++.|+..++ +.++++.+|+|+|+|
T Consensus 243 w~LLs~~rrk~~~lGv~f~-~GeV~~Fef--~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 243 WALLSGIRRKAITLGVQFV-KGEVVGFEF--ESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred HHHHHHHHHHhhhhcceEe-cceEEEEEE--ecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 9999999999999999998 567888775 3 111 1233444443 268899999999999
Q ss_pred hHHhhhhh--------cCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC
Q 015088 213 VGKLVKRI--------TGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY 284 (413)
Q Consensus 213 s~~l~~~~--------~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~ 284 (413)
+.++.+.. +...+|+.|.|.++..+..+.. |...+|.....+ .+|++...-...++ .|-....
T Consensus 320 s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~------PGl~~Pl~iDps--G~f~Rrdglg~nfl-~grsp~e 390 (509)
T KOG2853|consen 320 SGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDV------PGLDTPLTIDPS--GVFFRRDGLGGNFL-CGRSPSE 390 (509)
T ss_pred HHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCC------CCCCCceeECCC--ccEEEecCCCCcee-cccCCcc
Confidence 99887654 1235789999999888875531 223466665444 36776654322222 2211111
Q ss_pred CCCCC--CCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeee-cCCCCeEecCCCCCCCCCEEEEeCCCCCCCcc
Q 015088 285 PCDPD--RRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSI-TPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKM 361 (413)
Q Consensus 285 ~~~~~--~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~ 361 (413)
+..|+ ..+.+++.+.+.++..+....|.+... ++...|+|++.. |-|..++||++|.. .|+|+++|++|||+..
T Consensus 391 d~~~d~~nldVD~d~F~qkiwP~L~nRVP~feta-kVqsaWaGyyD~NtfD~ngViG~HP~y--~Nly~atGFsghGvqq 467 (509)
T KOG2853|consen 391 DEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETA-KVQSAWAGYYDHNTFDDNGVIGEHPLY--TNLYMATGFSGHGVQQ 467 (509)
T ss_pred ccCCCccccccChHHHHhhhhHHHHhccccccee-eeeehhcccccccccccCCcccCCcce--eeeeeeecccccchhc
Confidence 11122 222233337788888999999999976 788899999875 88999999999998 9999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCccccccccccccccCCCCCCc
Q 015088 362 APAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVK 400 (413)
Q Consensus 362 a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~~~~~ 400 (413)
+|++|+.+|++|++|+...+|+..|+.+|+...+-..|.
T Consensus 468 s~avgRAiaElIldG~f~tidLsrf~f~Rlv~~qpi~E~ 506 (509)
T KOG2853|consen 468 SPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQPITEP 506 (509)
T ss_pred chHHHHHHHHHHhcCceeEEeccccchhHHhccCccccc
Confidence 999999999999999999999999999999887655443
No 13
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=1.4e-36 Score=283.99 Aligned_cols=335 Identities=18% Similarity=0.203 Sum_probs=241.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCee
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
+||+|||||++|+++|++|+++|++|+|||+.... .++|..+.+.+...... .....+...+.+.|+++.++.+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~--~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~- 77 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA--QGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIW- 77 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCC-
Confidence 59999999999999999999999999999998754 45666666666532222 345678888999999998887765
Q ss_pred EEeeceeeeCCCCh--hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 87 YFKAHQFDMGPSEN--KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 87 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
+.+.+.+.+...+. +.+....+.....+.+.++++++++.+.+|. +..+....+++.+.++++||..++..|.+.+.
T Consensus 78 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~ 156 (365)
T TIGR03364 78 VRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPA-LRLDGLRGGLHSPDELRVEPREAIPALAAYLA 156 (365)
T ss_pred EEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCC-CCccCceEEEEcCCCeeECHHHHHHHHHHHHH
Confidence 45667766643322 2234444445566777899999999999997 54355567888899999999999999999887
Q ss_pred HC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCC
Q 015088 165 KN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGN 243 (413)
Q Consensus 165 ~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~ 243 (413)
+. |++++++++|++|+. . .|.|.+|+ ++||+||+|+|+|+..+++.+ +..+++.|.+++++.++..+..
T Consensus 157 ~~~Gv~i~~~t~V~~i~~--~------~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p~~~q~~~~~p~~~~ 226 (365)
T TIGR03364 157 EQHGVEFHWNTAVTSVET--G------TVRTSRGD-VHADQVFVCPGADFETLFPEL-FAASGVRRCKLQMMRTAPQPRL 226 (365)
T ss_pred hcCCCEEEeCCeEEEEec--C------eEEeCCCc-EEeCEEEECCCCChhhhCcch-hhccCcceEEEEeeeccCCCCC
Confidence 75 999999999999855 2 57777786 889999999999999888776 6678999999999877633211
Q ss_pred C--CccccCC-----------------------CCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchh
Q 015088 244 E--ADYAVGG-----------------------DFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL 298 (413)
Q Consensus 244 ~--~~~~~~~-----------------------~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (413)
. ..+.... ..|.+. .....+|++|..+ |.+.+|........++. ......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~--g~~~iG~~~~~~~~~~~--~~~~~~ 301 (365)
T TIGR03364 227 PLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELL-EWGIHLMVSQNPD--GELIIGDSHEYGLAPDP--FDDEEI 301 (365)
T ss_pred cCCccccccceeeechhHhhCcchHHHHhhhcccCchhh-hcCeEEEEEECCC--CCEEecCcccccCCCCC--cchHHH
Confidence 0 0000000 001111 1122478888765 43444432212111111 112225
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHH
Q 015088 299 LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGR 367 (413)
Q Consensus 299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~ 367 (413)
.+.+.+.+.+++ .+.+. ++...|+|+|++|+|..|+++.. . +|+|+++||+|+|+++||++|+
T Consensus 302 ~~~l~~~~~~~~-~l~~~-~~~~~w~G~r~~t~d~~~v~~~~--~--~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 302 DNLILAEAKTIL-GLPDL-DIVERWQGVYASSPPAPIFLERP--D--DGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred HHHHHHHHHHhc-CCCCC-ceEEEEeEEecCCCCCCceecCC--C--CCeEEEEecCCCcccccccccC
Confidence 566777787776 57664 67889999999999988888744 3 8999999999999999999885
No 14
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=1.6e-36 Score=284.54 Aligned_cols=336 Identities=21% Similarity=0.244 Sum_probs=244.8
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC--CChHHHH----HHHHHHHHHHHHHhCCee-EEeeceee
Q 015088 22 AAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--DYYHPMV----LESCLLWEQAQSEIGYKV-YFKAHQFD 94 (413)
Q Consensus 22 ~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~--~~~~~l~----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 94 (413)
+||+|+++|++|+|||+....+ .++|+.+.|.+...... ....++. ..+.++|.++.+. +.++ +...+.+.
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~~~~G~L~ 78 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPA-QGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDHEWCGVLQ 78 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCccc-ccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccCceEE
Confidence 5899999999999999975442 35666667777654322 2233443 3456778887653 5554 34567776
Q ss_pred eCCCChhhHHHHHHHHhhCCCCc---cccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEE
Q 015088 95 MGPSENKSLRSVIASCRKNSVPH---QVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLR 171 (413)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~ 171 (413)
+.... +.+..+.+..+..+.+. ++++.+++.+.++. .....+++.+.++++||..++..|.+.+.+ |++++
T Consensus 79 ~a~~~-~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~ 152 (381)
T TIGR03197 79 LAYDE-KEAERLQKLLEQLGFPEELARWVDAEQASQLAGI----PLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLH 152 (381)
T ss_pred ecCCh-HHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCC----CCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEE
Confidence 65442 33334444444455543 46788888887653 445678899999999999999999999998 99999
Q ss_pred cCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCC
Q 015088 172 DNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGG 251 (413)
Q Consensus 172 ~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 251 (413)
++++|++|+. + ++.+.|+|.+|..++||.||+|+|+|+..+.+. ..+|+.|.+|+++.++.++.. .
T Consensus 153 ~~~~V~~i~~--~--~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~---~~~pi~p~rg~~~~~~~~~~~----~--- 218 (381)
T TIGR03197 153 FNTEITSLER--D--GEGWQLLDANGEVIAASVVVLANGAQAGQLAQT---AHLPLRPVRGQVSHLPATEAL----S--- 218 (381)
T ss_pred eCCEEEEEEE--c--CCeEEEEeCCCCEEEcCEEEEcCCccccccccc---ccCCccccccceeeccCCCcc----c---
Confidence 9999999988 6 456889988887789999999999999887764 367899999999887643211 0
Q ss_pred CCCeEEEcCCCceEecCCCCCCCcEEEec-CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCC-----CCCCCeeecee
Q 015088 252 DFPSFASYGDPYIYGTPSLEYPGLIKIAL-HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRV-----DSNGPVATQLC 325 (413)
Q Consensus 252 ~~~~~~~~~~~~~y~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~-----~~~~~~~~~~g 325 (413)
.++.....+ .|++|..+ |.+.+|. ......++. . .....+.+.+.+.+++|.+. +. ++...|+|
T Consensus 219 ~~~~~~~~~---~y~~p~~~--g~~~iG~t~~~~~~~~~---~-~~~~~~~~~~~~~~~~P~l~~~~~~~~-~~~~~~~G 288 (381)
T TIGR03197 219 ALKTVLCYD---GYLTPANN--GEHCIGASYDRNDDDLA---L-READHAENLERLAECLPALAWASEVDI-SALQGRVG 288 (381)
T ss_pred ccCceEeCC---ceecccCC--CceEeecccCCCCCCCC---c-CHHHHHHHHHHHHHhCcccchhhccCc-cccCceEE
Confidence 133333222 58888765 4344443 221111111 1 11257788899999999886 54 67889999
Q ss_pred eeeecCCCCeEecCCCC-------------------------CCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCc
Q 015088 326 MYSITPDEDFVIDFLGG-------------------------EFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQG 380 (413)
Q Consensus 326 ~~~~t~d~~p~ig~~~~-------------------------~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~ 380 (413)
+|++|+|+.|+||.+|+ . +|+|+++|++|+|++++|++|+++|++|. +.+++
T Consensus 289 ~r~~t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~G~~g~G~~~ap~~g~~la~~i~-~~~~~ 365 (381)
T TIGR03197 289 VRCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYY--PGLYVLGGLGSRGLTSAPLAAEILAAQIC-GEPLP 365 (381)
T ss_pred EeccCCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCC--CCeEEEecccchHHHHHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999987 6 89999999999999999999999999998 55544
Q ss_pred cc---cccccccccc
Q 015088 381 VE---LQHFRISRFK 392 (413)
Q Consensus 381 ~~---~~~~~~~R~~ 392 (413)
.+ ++.|+|+||.
T Consensus 366 ~~~~~~~~~~~~rf~ 380 (381)
T TIGR03197 366 LERDLLHALHPARFL 380 (381)
T ss_pred CcHHHHHhcChhhhc
Confidence 44 4789999995
No 15
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=6.3e-35 Score=270.30 Aligned_cols=324 Identities=19% Similarity=0.203 Sum_probs=246.0
Q ss_pred HHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHh----CCee-EEeeceee
Q 015088 24 YQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEI----GYKV-YFKAHQFD 94 (413)
Q Consensus 24 ~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~ 94 (413)
++|+++|.+|+|||++... .++|..+++.+.... ....+..+...+.++|+++.++. +.++ +...|.+.
T Consensus 1 ~~La~~G~~V~vle~~~~~--~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~ 78 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMG--GGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLV 78 (337)
T ss_pred ChHHHCCCceEEEcCCCCC--cccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEE
Confidence 4799999999999998743 466766667665432 34456788888999999887654 5555 45678877
Q ss_pred eCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEc
Q 015088 95 MGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRD 172 (413)
Q Consensus 95 ~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~ 172 (413)
+... +.+.+++..+..+..+.+.+.++.+++.+.+|. +. +....+++.+.+++++|..++..|.+.+.+.|+++++
T Consensus 79 ~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~-l~-~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~ 156 (337)
T TIGR02352 79 VAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPY-LS-GGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE 156 (337)
T ss_pred EeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCC-CC-cccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence 6543 334456667777778888999999999999987 54 4456788889999999999999999999999999999
Q ss_pred CceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCC
Q 015088 173 NMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGD 252 (413)
Q Consensus 173 ~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 252 (413)
+++|+++.. ++ +..+.|.+.+|. ++||.||+|+|+|+..+.. +++.+.+++++.++.+.... ..
T Consensus 157 ~~~v~~i~~--~~-~~~~~v~~~~g~-~~a~~vV~a~G~~~~~l~~------~~~~~~~g~~~~~~~~~~~~------~~ 220 (337)
T TIGR02352 157 HTEVQHIEI--RG-EKVTAIVTPSGD-VQADQVVLAAGAWAGELLP------LPLRPVRGQPLRLEAPAVPL------LN 220 (337)
T ss_pred cceEEEEEe--eC-CEEEEEEcCCCE-EECCEEEEcCChhhhhccc------CCccccCceEEEeecccccc------CC
Confidence 999999988 62 234567888884 9999999999999987654 57899999998887543111 01
Q ss_pred CCeEEEcCCCceEecCCCCCCCcEEEecCCC-CCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC
Q 015088 253 FPSFASYGDPYIYGTPSLEYPGLIKIALHGG-YPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP 331 (413)
Q Consensus 253 ~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~ 331 (413)
.+......+...|++|..+ +.+++|.... ...+ ... ..+..+.+.+.+.++||.+.+. ++...|+|+|++|+
T Consensus 221 ~~~~~~~~~~~~y~~p~~~--g~~~iG~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~r~~t~ 293 (337)
T TIGR02352 221 RPLRAVVYGRRVYIVPRRD--GRLVVGATMEESGFD---TTP-TLGGIKELLRDAYTILPALKEA-RLLETWAGLRPGTP 293 (337)
T ss_pred cccceEEEcCCEEEEEcCC--CeEEEEEeccccCcc---CCC-CHHHHHHHHHHHHHhCCCcccC-cHHHheecCCCCCC
Confidence 2221111122378888764 4344444221 1111 111 1236889999999999999875 67889999999999
Q ss_pred CCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcC
Q 015088 332 DEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG 376 (413)
Q Consensus 332 d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g 376 (413)
|+.|+||.+|.. +|+|+++|+||+|++++|++|+++|++|.++
T Consensus 294 D~~piig~~~~~--~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 294 DNLPYIGEHPED--RRLLIATGHYRNGILLAPATAEVIADLILGK 336 (337)
T ss_pred CCCCEeCccCCC--CCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence 999999999987 8999999999999999999999999999854
No 16
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=4.9e-33 Score=261.93 Aligned_cols=345 Identities=17% Similarity=0.168 Sum_probs=250.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeeccc--C-CCChHHHHHHHHHHHHHHHHH
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--P-EDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~~~ 81 (413)
++||+|||||++|+++|++|+++ |++|+|||+....+ .++|..+.+.++... . ......+...+...|.++.++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~-~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA-RHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc-ccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999 99999999986543 345666667666532 1 122467888899999999888
Q ss_pred hCCeeEEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 82 IGYKVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
.+.. +...|.+.+...+ ...+.+..+..+..+.+.+.++.+++.+.+|. +. ...+++.+.++++++..+++.|
T Consensus 81 ~~~~-~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~---~~~al~~p~~g~vd~~~l~~aL 155 (393)
T PRK11728 81 HGIP-YEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPN-IR---GLGAIFVPSTGIVDYRAVAEAM 155 (393)
T ss_pred cCCC-cccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCC-cc---ccceEEcCCceEECHHHHHHHH
Confidence 7765 4466777665432 23455666777778888899999999999997 33 3578899999999999999999
Q ss_pred HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc--cceeEEEEEEEEE
Q 015088 160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE--LPIQAVETTVCYW 237 (413)
Q Consensus 160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~~~~~~g~~~~~ 237 (413)
.+.+++.|++++++++|.++.. + ++.+.|.+.+|+ +++|.||+|+|.|+..+.+.+ +.. .++.|.+|+++.+
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g~-i~ad~vV~A~G~~s~~l~~~~-g~~~~~~v~p~rGq~~~~ 229 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDE--H--ANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMA-GLEPDFRIVPFRGEYYRL 229 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEe--c--CCeEEEEECCCE-EEeCEEEECCCcchHHHHHHh-CCCCCCceEEeeeEEEEe
Confidence 9999999999999999999987 6 356778887774 999999999999998888766 653 7899999999888
Q ss_pred EecCCCCCccccCCCCCeEE-E---cCCCceEecCCCCCCCcEEEec--CCC---CCCCCCCCC---C----C-------
Q 015088 238 RIKEGNEADYAVGGDFPSFA-S---YGDPYIYGTPSLEYPGLIKIAL--HGG---YPCDPDRRP---W----G------- 294 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~y~~p~~~~~~~~~~~~--~~~---~~~~~~~~~---~----~------- 294 (413)
..+.... + . ..++. . .....+|++|..+ |.+.+|. +.. ...+..... + .
T Consensus 230 ~~~~~~~--~-~---~~v~~~p~~~~~~~g~~~~p~~~--G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (393)
T PRK11728 230 APEKNQL--V-N---HLIYPVPDPAFPFLGVHLTRMID--GSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKL 301 (393)
T ss_pred ccccccc--c-C---CceecCCCCCCCcceEEeecCCC--CCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHH
Confidence 6432110 0 0 11110 0 0012378888765 5555553 110 111110000 0 0
Q ss_pred ----CchhHHHH---------HHHHHhhcCCCCCCCCCeeeceeeee--ecCCCCeEecCCCCCCCCCEEEEeCCCCCCC
Q 015088 295 ----PGLLLDSL---------KEWIQGRFAGRVDSNGPVATQLCMYS--ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359 (413)
Q Consensus 295 ----~~~~~~~l---------~~~~~~~~p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~ 359 (413)
....++++ .+.+.+++|.+.+. .+...|+|+|| +++|+.|+-+.+-.. .++.+.+.|..+-|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~-~i~~~~~G~Rp~~~~~d~~~~~d~~i~~-~~~~~~~~~~~spg~ 379 (393)
T PRK11728 302 AQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLS-DLQPYPAGVRAQAVSRDGKLVDDFLFVE-TPRSLHVCNAPSPAA 379 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHH-HcccCCCceeeeeeCCCCCccCceEEec-CCCEEEEcCCCCchH
Confidence 01133444 58899999999875 67789999999 899987655443221 167888999999999
Q ss_pred ccchHHHHHHHHHH
Q 015088 360 KMAPAVGRILADLV 373 (413)
Q Consensus 360 ~~a~~~a~~la~~i 373 (413)
|.||.+|+.+++++
T Consensus 380 t~s~~ia~~v~~~~ 393 (393)
T PRK11728 380 TSSLPIGEHIVSKV 393 (393)
T ss_pred HccHHHHHHHHhhC
Confidence 99999999999863
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2e-30 Score=251.92 Aligned_cols=338 Identities=14% Similarity=0.157 Sum_probs=232.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHH
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~ 81 (413)
.++||+|||||++|+++|++|+++|++|+|||+++.. .++|..+++.++.... ..............+.++...
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~--~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~ 82 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA--TGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH 82 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC--CCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence 4699999999999999999999999999999998764 4677777787775322 111112222333444444433
Q ss_pred hCCeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 82 IGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
++...+.+.+... +...+....+.+...|++.+.++++++.+++|. ++ +....+++.+ ++++||.+++..+
T Consensus 83 ----~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~-l~-~~~~ga~~~~-dg~vdp~rl~~al 155 (546)
T PRK11101 83 ----CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA-VN-PALIGAVKVP-DGTVDPFRLTAAN 155 (546)
T ss_pred ----hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-cC-ccceEEEEec-CcEECHHHHHHHH
Confidence 2334444444322 223345556667788888999999999999998 54 3455677777 5799999999999
Q ss_pred HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCC--cEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088 160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNG--EKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV 234 (413)
Q Consensus 160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~ 234 (413)
...+.++|++++++++|+++.. ++ +..+.|++ .++ .+|+|+.||+|+|+|+..+..+. +...++.|.+|++
T Consensus 156 ~~~A~~~Ga~i~~~t~V~~i~~--~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~ 231 (546)
T PRK11101 156 MLDAKEHGAQILTYHEVTGLIR--EG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFPAKGSL 231 (546)
T ss_pred HHHHHhCCCEEEeccEEEEEEE--cC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc-CCCCceeecceEE
Confidence 9999999999999999999988 62 23333443 233 36999999999999999998766 8889999999999
Q ss_pred EEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCC-C-CCCCCCCCCCchhHHHHHHHHHhhc
Q 015088 235 CYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGY-P-CDPDRRPWGPGLLLDSLKEWIQGRF 310 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (413)
+.++... .. ..... ...+. .|+.|. .+.+.+|++... . .+++....+ .+.++.|++.+.+++
T Consensus 232 lv~~~~~--~~-------~vi~~~~~~~~~-~~~vp~---~~~~liGtT~~~~~~~~~~~~~~t-~~~i~~Ll~~~~~l~ 297 (546)
T PRK11101 232 LIMDHRI--NN-------HVINRCRKPADA-DILVPG---DTISLIGTTSTRIDYDQIDDNRVT-AEEVDILLREGEKLA 297 (546)
T ss_pred EEECCcc--Cc-------eeEeccCCCCCC-CEEEec---CCEEEEeeCCCCccCCCcCCCCCC-HHHHHHHHHHHHHhC
Confidence 9875211 10 00000 01112 244553 244445543321 1 122212222 237889999999999
Q ss_pred CCCCCCCCCeeeceeeeeecC-CC----------CeEecCC--CCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcC
Q 015088 311 AGRVDSNGPVATQLCMYSITP-DE----------DFVIDFL--GGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG 376 (413)
Q Consensus 311 p~~~~~~~~~~~~~g~~~~t~-d~----------~p~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g 376 (413)
|.+.+. .++..|+|+||.+. +. .++++.. +.. +|++.++| | .++..+.+|+.+++++.+.
T Consensus 298 P~l~~~-~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~--~gli~i~G--G-kltt~r~~Ae~v~d~v~~~ 370 (546)
T PRK11101 298 PVMAKT-RILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL--DGFITITG--G-KLMTYRLMAEWATDAVCRK 370 (546)
T ss_pred CCCCcc-CEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCC--CCeEEEEC--C-hHHHHHHHHHHHHHHHHHh
Confidence 999875 78889999999743 22 2677743 334 78999997 3 3899999999999999743
No 18
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.97 E-value=9.1e-30 Score=212.71 Aligned_cols=350 Identities=21% Similarity=0.191 Sum_probs=228.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHH
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQA 78 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g------~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 78 (413)
.+..+|+|||||+.|+++||+|++++ +.|+|+|.....+ ++|+..++.+...........++..++.+++++
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~--gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L 85 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG--GASGKASGFLAKWCQPSIIQPLATLSFKLHEEL 85 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc--ccccccchhhHhhhCCcccchhhHHHHHHHHHH
Confidence 34578999999999999999999987 7999999988764 566666666663333334678899999999999
Q ss_pred HHHhCC-ee--EEeeceeeeCCC-ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEE-ecCCceeChH
Q 015088 79 QSEIGY-KV--YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVA-TELGGVIKPT 153 (413)
Q Consensus 79 ~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (413)
.++++- .- +.....+.+... +... -.+.....+++.++.... ...+- ....++++|.
T Consensus 86 sdeydGvnnwgYRaltTws~ka~~en~~-------p~k~pegldWi~~e~v~~-----------~ssiG~t~ttaqvhP~ 147 (380)
T KOG2852|consen 86 SDEYDGVNNWGYRALTTWSCKADWENTN-------PAKVPEGLDWIQRERVQK-----------CSSIGSTNTTAQVHPY 147 (380)
T ss_pred HHhhcCcccccceeeeEEEEEeecccCC-------cccCCcchhhhhhHHhhh-----------heeccCCCccceeCHH
Confidence 888642 11 121122211110 0000 001111123333222111 11111 2345899999
Q ss_pred HHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEc----CCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088 154 KAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVT----SNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228 (413)
Q Consensus 154 ~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~----~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~ 228 (413)
.+++.+.+.+++.| |++.++ +|.++.. +. .....+-. ........+++|+++|+|+.++++.. ++.
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~d--Ek-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-----rIs 218 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSD--EK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-----RIS 218 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeec--cc-ccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-----ccc
Confidence 99999999998875 999975 6777743 21 12222211 11335678899999999999998754 777
Q ss_pred EEEEEEEEEEecCCCCCccccCCCCCeEEEcC-----CCceEecCCCCCCCcEEEecCCCCCCCCCCCCCC-CchhHHHH
Q 015088 229 AVETTVCYWRIKEGNEADYAVGGDFPSFASYG-----DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWG-PGLLLDSL 302 (413)
Q Consensus 229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 302 (413)
..+-+.+.++++.. .+.+..-+-.+...+ .+..|.++..+ -++.+.+......+.+.++.. ..+...+|
T Consensus 219 glrihsI~l~~~e~---~v~~~avf~~l~~~~g~ei~~pe~y~rkd~E--vyicg~~~~e~~lPedsd~v~~npeki~~L 293 (380)
T KOG2852|consen 219 GLRIHSITLSPGEK---PVGPSAVFCELNTMDGLEICKPEEYARKDRE--VYICGETDKEHLLPEDSDDVFVNPEKIIEL 293 (380)
T ss_pred eeeeeeEEecCCCC---CCCCceEEEEEEeCCCccccCcceeecCCce--EEEecCCCccccCCcccccceeCHHHHHHH
Confidence 78888887774432 122211011111222 23467666532 222222222222222222211 22378888
Q ss_pred HHHHHhhcCCCCCCCCCeeeceeeeeecCC-CCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcc
Q 015088 303 KEWIQGRFAGRVDSNGPVATQLCMYSITPD-EDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGV 381 (413)
Q Consensus 303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d-~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~ 381 (413)
.+.+..+.+.+.+. .+...++|+-|.+.+ +.|+||+.+ .++|+++||+-+|++.+|+.|+.+|++|++|+.+..
T Consensus 294 k~~a~~v~s~l~ks-~v~~~qacfLP~sn~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~mAEllldgeaTSa 368 (380)
T KOG2852|consen 294 KEMADLVSSELTKS-NVLDAQACFLPTSNITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKCMAELLLDGEATSA 368 (380)
T ss_pred HHHHHHhhhhhccc-hhhhhhhccccccCCCCCceEeecC----CceEEeecccccceecCcchhHHHHHHHhccceeee
Confidence 88888888888875 567789999999877 999999998 689999999999999999999999999999999999
Q ss_pred cccccccccccc
Q 015088 382 ELQHFRISRFKE 393 (413)
Q Consensus 382 ~~~~~~~~R~~~ 393 (413)
++++|+|++|.+
T Consensus 369 nid~f~p~~~~~ 380 (380)
T KOG2852|consen 369 NIDPFDPNLGEK 380 (380)
T ss_pred ecCccCccccCC
Confidence 999999999853
No 19
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=3.5e-28 Score=234.89 Aligned_cols=347 Identities=18% Similarity=0.174 Sum_probs=221.0
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc--cCCCChHHHHHHHHHHHHHHHHH
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPEDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~ 81 (413)
|..++||+|||||++|+++|++|+++|++|+|||+++.. .++|+.+++.++.. +.......+..++...+..+.+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~--~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ 80 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA--QGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA 80 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC--CCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 455799999999999999999999999999999999765 45666666666543 22222456666666666665554
Q ss_pred hCCeeEEeeceeeeCCC--ChhhHH-----HHHHHHh-hCCC-CccccCHHHHHHHcCCcccCCCCeEEEEecCCceeCh
Q 015088 82 IGYKVYFKAHQFDMGPS--ENKSLR-----SVIASCR-KNSV-PHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKP 152 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
... +....+ +.+... ....+. .+++.+. ...+ +.+.++..+..+..+. .....+.+...+++++|
T Consensus 81 ap~-l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l----~~~~~~a~~~~dg~vd~ 154 (502)
T PRK13369 81 APH-IIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPL----KPEYTKGFEYSDCWVDD 154 (502)
T ss_pred CCc-cccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCc----hHhcCEEEEEcCeeecH
Confidence 221 112222 222111 111111 1111111 1111 1344454444333331 22344556667789999
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC----cEEEcCEEEEcCCCChHHhhhhhcCCc--cc
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG----EKFWGKKCVVTAGAWVGKLVKRITGLE--LP 226 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g----~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~ 226 (413)
.+++..+...++++|++++.+++|+++.. + ++.+.|.+.++ .+++|+.||+|+|+|+..+.+++.+.. .+
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~ 230 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARR--E--GGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRN 230 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEE--c--CCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcc
Confidence 99999999999999999999999999988 6 45566665443 258999999999999999988654653 46
Q ss_pred eeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHHHHH
Q 015088 227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSLKEW 305 (413)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 305 (413)
+.|.+|+++.+.... . . .....+...++..+|+.|+.+ +...+|+++.. ..+|+....+ .+..+.|++.
T Consensus 231 v~p~kG~~lv~~~~~--~----~-~~~~~~~~~dgr~~~i~P~~~--~~~liGtTd~~~~~~~~~~~~~-~~~i~~ll~~ 300 (502)
T PRK13369 231 VRLVKGSHIVVPKFW--D----G-AQAYLFQNPDKRVIFANPYEG--DFTLIGTTDIAYEGDPEDVAAD-EEEIDYLLDA 300 (502)
T ss_pred eEEeeEEEEEeCCcc--C----C-CceEEEeCCCCeEEEEEEecC--CEEEEEecCccccCCCCCCCCC-HHHHHHHHHH
Confidence 999999988764211 0 1 011122223344578999854 44444543321 2222222212 2378999999
Q ss_pred HHhhcC-CCCCCCCCeeeceeeeeecCCC---------CeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088 306 IQGRFA-GRVDSNGPVATQLCMYSITPDE---------DFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS 375 (413)
Q Consensus 306 ~~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 375 (413)
+++++| .+... .++..|+|+||.++|+ ...|-.......++++.+.| .++|..+.+|+.+++.+.+
T Consensus 301 ~~~~~~~~l~~~-~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~~ 376 (502)
T PRK13369 301 ANRYFKEKLRRE-DVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLKP 376 (502)
T ss_pred HHHhhCCCCCHh-HEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHHH
Confidence 999997 77753 6788999999998653 22232221110167888887 4899999999999999874
Q ss_pred C
Q 015088 376 G 376 (413)
Q Consensus 376 g 376 (413)
.
T Consensus 377 ~ 377 (502)
T PRK13369 377 F 377 (502)
T ss_pred h
Confidence 3
No 20
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=1.2e-27 Score=230.90 Aligned_cols=347 Identities=17% Similarity=0.142 Sum_probs=217.3
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHH
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQA 78 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 78 (413)
|+| ...+||+|||||++|+++|+.|+++|++|+|||+++..+ ++|..+++.++... .......+..+++..+..+
T Consensus 1 ~~~-~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l 77 (508)
T PRK12266 1 MTM-METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS--ATSSASTKLIHGGLRYLEHYEFRLVREALAEREVL 77 (508)
T ss_pred CCC-CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--CccccccccccchHHHhhhccHHHHHHHHHHHHHH
Confidence 664 456999999999999999999999999999999987764 44545555555432 2222456777777766666
Q ss_pred HHHhCCeeEEeeceee-eCCCChhhH-HHH-HHHHhhCCCCccccCHHHHHHHc-----CCcccCCCCeEEEEecCCcee
Q 015088 79 QSEIGYKVYFKAHQFD-MGPSENKSL-RSV-IASCRKNSVPHQVLDCRQVLEKY-----SGRIEIPENWVGVATELGGVI 150 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 150 (413)
.+....-. .+...+. ......... ... .......+. ...++..+..... +. + .....+.+.+.++++
T Consensus 78 ~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-~~~l~~~~~~~~~~~~~~~~-L--~~~l~g~~~~~dg~v 152 (508)
T PRK12266 78 LRMAPHII-WPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-RKSLPGSRGLDLGRDPAGSP-L--KPEITRGFEYSDCWV 152 (508)
T ss_pred HHhCCCcc-cccceEEEecccccchHHHHHHHHHHHhhcC-CCCCChhhhhchhhcccCCC-c--chhhcEEEEEcCccc
Confidence 55432211 1111100 000000000 000 011111111 1122222222221 32 2 222333355667789
Q ss_pred ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---Cc--EEEcCEEEEcCCCChHHhhhhhcCC--
Q 015088 151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---GE--KFWGKKCVVTAGAWVGKLVKRITGL-- 223 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~VV~A~G~~s~~l~~~~~g~-- 223 (413)
||.+++..+.+.+.++|++++++++|+++.. + ++.+.+.+.+ |+ +++|+.||+|+|+|+..+.+++.+.
T Consensus 153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~ 228 (508)
T PRK12266 153 DDARLVVLNARDAAERGAEILTRTRVVSARR--E--NGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228 (508)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence 9999999999999999999999999999987 6 3456665442 43 6899999999999999987754354
Q ss_pred ccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHH
Q 015088 224 ELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSL 302 (413)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 302 (413)
..++.+.+|+++.+.... .. .....+...++..+|+.|+.+ +...+|+++.. ..+++.... ..+..+.|
T Consensus 229 ~~~i~p~kG~~lvl~~~~------~~-~~~~~~~~~dgr~v~~~P~~~--g~~liGttd~~~~~~~~~~~~-~~~~i~~L 298 (508)
T PRK12266 229 PYGIRLVKGSHIVVPRLF------DH-DQAYILQNPDGRIVFAIPYED--DFTLIGTTDVEYKGDPAKVAI-SEEEIDYL 298 (508)
T ss_pred CcceeeeeeEEEEECCcC------CC-CcEEEEeCCCCCEEEEEEeCC--CeEEEecCCCCCCCCCCCCCC-CHHHHHHH
Confidence 457999999988764211 11 111222233455578888854 45555554321 222222111 22378999
Q ss_pred HHHHHhhcC-CCCCCCCCeeeceeeeeecCCCCe---------EecCC--CCCCCCCEEEEeCCCCCCCccchHHHHHHH
Q 015088 303 KEWIQGRFA-GRVDSNGPVATQLCMYSITPDEDF---------VIDFL--GGEFGEDVVVAGGFSGHGFKMAPAVGRILA 370 (413)
Q Consensus 303 ~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~la 370 (413)
++.+++++| .+... .++..|+|+||.++|+.| +|-.+ .+. +|++.++| -.+|..+.+|+.++
T Consensus 299 l~~~~~~~p~~l~~~-~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~--~gli~v~G---gk~Tt~r~mAe~~~ 372 (508)
T PRK12266 299 CKVVNRYFKKQLTPA-DVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGG--APLLSVFG---GKITTYRKLAEHAL 372 (508)
T ss_pred HHHHHHhcCCCCCHH-HEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCC--CCeEEEEc---ChHHHHHHHHHHHH
Confidence 999999996 67653 678899999999988543 44333 222 67888887 35999999999999
Q ss_pred HHHhc
Q 015088 371 DLVLS 375 (413)
Q Consensus 371 ~~i~~ 375 (413)
+.+.+
T Consensus 373 ~~~~~ 377 (508)
T PRK12266 373 EKLAP 377 (508)
T ss_pred HHHHH
Confidence 99874
No 21
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=218.04 Aligned_cols=351 Identities=21% Similarity=0.223 Sum_probs=262.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHH
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 81 (413)
++||+|||||+.|+++|++|++++ ++|+||||...++ ..+|..+++++|.... .....+++......+.++.++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-QESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc-cccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998 9999999998885 4566688888887642 234567888888888999999
Q ss_pred hCCeeEEeeceeeeCC--CChhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088 82 IGYKVYFKAHQFDMGP--SENKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSM 158 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
++.++... +.+.+.. .+.+.++.+++.....++. .+.++++++.++.|. +. +....+++.+..+.+++..+...
T Consensus 82 ~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~-l~-~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 82 LGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPL-LN-EGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred hCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcc-cc-ccceeeEEcCCCceEcHHHHHHH
Confidence 99886554 6666543 3455678889999999998 789999999999998 44 34677899999999999999999
Q ss_pred HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcE-EEcCEEEEcCCCChHHhhhhhcCCc--cceeEEEEEEE
Q 015088 159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEK-FWGKKCVVTAGAWVGKLVKRITGLE--LPIQAVETTVC 235 (413)
Q Consensus 159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~VV~A~G~~s~~l~~~~~g~~--~~~~~~~g~~~ 235 (413)
|.+.++++|++++++++|++|++ .++ +.+.+.+.+|++ ++|+.||+|+|.++..++++. |+. ....|.+|+++
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~--~~d-g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~-g~~~~~~~~P~~G~y~ 234 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEK--QSD-GVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA-GIPEDFKIFPVRGEYL 234 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEE--eCC-ceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh-CCCcccccCccceEEE
Confidence 99999999999999999999998 632 367778888876 999999999999999999887 654 46789999988
Q ss_pred EEEecCCCC--Cccc--cCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCC-CCCCCchhHHHHHHHHHhhc
Q 015088 236 YWRIKEGNE--ADYA--VGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-RPWGPGLLLDSLKEWIQGRF 310 (413)
Q Consensus 236 ~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 310 (413)
++....... ..+- +..++| ...++.+++.+ |.+.+|.+..+...-.. ......+..+.+.......+
T Consensus 235 ~~~~~~~~~~~~~Iy~~p~~~~p------~~gV~~~~~id--G~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~ 306 (429)
T COG0579 235 VLDNEVKALLRHKIYPVPNPGLP------GLGVHHTPTID--GSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGM 306 (429)
T ss_pred EEcccccccccceeecCCCCCCC------CCcceeecccC--CeEEECCCcccchhhhccccccccchhhhHHHhhhhhc
Confidence 776311110 0000 001111 12245555533 55555543322200011 01111226788888888999
Q ss_pred CCCCCCCCCeeeceeeee-----ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088 311 AGRVDSNGPVATQLCMYS-----ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS 375 (413)
Q Consensus 311 p~~~~~~~~~~~~~g~~~-----~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 375 (413)
|.+.-.........|.|| ..+....++-...+. ++.....|.-..|++-+|..++.+.+++..
T Consensus 307 ~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~--~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 307 PDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDE--DWFINVAGIRSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred ccccccccchhhhheeccccccccccccceecccccCC--CCceeeeeEEccccccChhHhhhHhhhccc
Confidence 988721246667889999 466666777656555 788888899999999999999999999863
No 22
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.97 E-value=2e-27 Score=233.35 Aligned_cols=350 Identities=15% Similarity=0.109 Sum_probs=216.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---------CCChHHHHHHHHHHH
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---------EDYYHPMVLESCLLW 75 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---------~~~~~~l~~~~~~~~ 75 (413)
+.++||+|||||+.|+++|+.|+++|++|+|||+++..+ ++|..++++++.... ......+..++...+
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~--GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er 146 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER 146 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCC--CcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence 346999999999999999999999999999999997764 455555554443210 011123344444434
Q ss_pred HHHHHHhCCeeEEeeceeeeCCC--ChhhH---HHHHHHH-hhCCC-CccccCHHHHHHHcCCcccCCC---CeEEEEec
Q 015088 76 EQAQSEIGYKVYFKAHQFDMGPS--ENKSL---RSVIASC-RKNSV-PHQVLDCRQVLEKYSGRIEIPE---NWVGVATE 145 (413)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 145 (413)
..+.+.... +....+.+..... ....+ ....+.. ...+. ..++++++++.+++|. +.... ...+.+.+
T Consensus 147 ~~l~~~ap~-l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~-L~~~~~~~~l~ga~~~ 224 (627)
T PLN02464 147 KQLIENAPH-LCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPT-LAKKGKDGSLKGTVVY 224 (627)
T ss_pred HHHHhhChh-hccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCC-CCccccccceeEEEEe
Confidence 333222111 0001111100000 00000 1111111 11222 2478999999999998 55220 24444466
Q ss_pred CCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhh
Q 015088 146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKR 219 (413)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~ 219 (413)
.++++||.+++..|.+.++++|++++.+++|+++.. ++ ++..+.|+. .+++ ++++|.||+|+|+|+..+.++
T Consensus 225 ~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~--~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~ 302 (627)
T PLN02464 225 YDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIK--DESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM 302 (627)
T ss_pred cCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEE--ecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence 779999999999999999999999999999999987 53 233444332 2333 589999999999999999887
Q ss_pred hcCCcc-ceeEEEEEEEEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCc
Q 015088 220 ITGLEL-PIQAVETTVCYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPG 296 (413)
Q Consensus 220 ~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
+.+... ++.|.+|+++.+. .. +.+. ..+.+. ..++..+|+.|+ + |.+.+|+++....++..... .+
T Consensus 303 ~g~~~~~~I~p~kG~hlvl~--~~----~~~~-~~~~i~~~~~dgr~~~~~P~-~--g~~liGtTd~~~~~~~~~~~-t~ 371 (627)
T PLN02464 303 ADGKAKPMICPSSGVHIVLP--DY----YSPE-GMGLIVPKTKDGRVVFMLPW-L--GRTVAGTTDSKTPITMLPEP-HE 371 (627)
T ss_pred ccCcCCCceEeeeeEEEecc--cc----cCCC-CceEEecCCCCCCEEEEEec-C--CcEEEecCCCCCCCCCCCCC-CH
Confidence 622333 4999999887653 11 1110 112222 124456899998 3 44455554322111211111 12
Q ss_pred hhHHHHHHHHHhhcC-CCCCCCCCeeeceeeeeecCCCCeEecCCCCC------CCCCEEEEeCCCCCCCccchHHHHHH
Q 015088 297 LLLDSLKEWIQGRFA-GRVDSNGPVATQLCMYSITPDEDFVIDFLGGE------FGEDVVVAGGFSGHGFKMAPAVGRIL 369 (413)
Q Consensus 297 ~~~~~l~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~------~~~~~~~~~G~~~~G~~~a~~~a~~l 369 (413)
+.++.|++.++++|| .+... .++..|+|+||.++|..|.++..+.. .+++++..+| |. +|..+.+|+.+
T Consensus 372 ~ei~~Ll~~a~~~~~~~l~~~-~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~G--Gk-~Tt~R~mAe~~ 447 (627)
T PLN02464 372 DEIQFILDAISDYLNVKVRRS-DVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITG--GK-WTTYRSMAEDA 447 (627)
T ss_pred HHHHHHHHHHHHhhCCCCChh-hEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEEC--Ch-HHHHHHHHHHH
Confidence 379999999999998 67653 56789999999999876655544332 1245555553 22 88889999999
Q ss_pred HHHHhc
Q 015088 370 ADLVLS 375 (413)
Q Consensus 370 a~~i~~ 375 (413)
.+.+.+
T Consensus 448 ~d~~~~ 453 (627)
T PLN02464 448 VDAAIK 453 (627)
T ss_pred HHHHHH
Confidence 999875
No 23
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=3.2e-24 Score=200.19 Aligned_cols=344 Identities=19% Similarity=0.186 Sum_probs=223.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHh
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
+..+||+|||||+.|+-+|+.++.+|++|+|+|+++.. .|+|..+.+.++... .......++.+++..-+.+.+..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A--sGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA--SGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc--CcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999999999999987 456667777777542 33333455666655555544443
Q ss_pred CCeeEEeeceeeeCCC---ChhhHHH-HHHHHhhCCC-----CccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChH
Q 015088 83 GYKVYFKAHQFDMGPS---ENKSLRS-VIASCRKNSV-----PHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPT 153 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+. +..+...+..... ....+.. +.......|+ ..+.++..+.....|. ++ ++...+.+...++++|+.
T Consensus 88 PH-~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~-l~-~~~l~ga~~y~D~~vdda 164 (532)
T COG0578 88 PH-LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPA-LK-KDGLKGAFRYPDGVVDDA 164 (532)
T ss_pred cc-ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcc-cc-hhhccceEEEccceechH
Confidence 32 2333333332222 1111211 1111122232 3567777777777887 54 445555666677888999
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---Cc--EEEcCEEEEcCCCChHHhhhhhcCCc----
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---GE--KFWGKKCVVTAGAWVGKLVKRITGLE---- 224 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~VV~A~G~~s~~l~~~~~g~~---- 224 (413)
++.-.....+.++|.+++..++|+++.+ + ++.+.|...| |+ +++|+.||+|||+|+.+++... +..
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~r--e--~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~-~~~~~~~ 239 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRR--E--GGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA-GLEQSPH 239 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeee--c--CCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh-cccCCCC
Confidence 9999999999999999999999999998 7 3466666433 33 7899999999999999998877 433
Q ss_pred cceeEEEEEEEEEEecCCCCCccccCCCCCeE-EEc-CCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088 225 LPIQAVETTVCYWRIKEGNEADYAVGGDFPSF-ASY-GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL 302 (413)
Q Consensus 225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (413)
..++|.+|.++++.- +.+.. .+.+ ... ++..++.+|..+ ..+.+++...++.+|+....+ ++..++|
T Consensus 240 ~~vr~skGsHlVv~~-------~~~~~-~a~~~~~~~d~r~~f~iP~~~--~~liGTTD~~~~~~~~~~~~~-~eEidyl 308 (532)
T COG0578 240 IGVRPSKGSHLVVDK-------KFPIN-QAVINRCRKDGRIVFAIPYEG--KTLIGTTDTDYDGDPEDPRIT-EEEIDYL 308 (532)
T ss_pred ccceeccceEEEecc-------cCCCC-ceEEeecCCCCceEEEecCCC--CEEeeccccccCCCcccCCCC-HHHHHHH
Confidence 469999999987762 01111 2222 222 445578888764 333333322233334433332 3379999
Q ss_pred HHHHH-hhcCCCCCCCCCeeeceeeeeecCCCCe---------EecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088 303 KEWIQ-GRFAGRVDSNGPVATQLCMYSITPDEDF---------VIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADL 372 (413)
Q Consensus 303 ~~~~~-~~~p~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~ 372 (413)
++.++ .+-|.+... .++..|+|+||...|+.+ ++-.+.+. .+++...| -=+|.--.+|+.+.+.
T Consensus 309 l~~~~~~~~~~l~~~-dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~--~glltv~G---GKlTTyR~maE~a~d~ 382 (532)
T COG0578 309 LDAVNRYLAPPLTRE-DILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAEL--AGLLTVAG---GKLTTYRKMAEDALDA 382 (532)
T ss_pred HHHHHhhhhccCChh-heeeeeeeeeeccCCCCCchhhccCceEEEecCCC--CCeEEEec---chhHHhHHHHHHHHHH
Confidence 99999 444666643 577899999997664442 22222222 57777765 2466666777777777
Q ss_pred Hhc
Q 015088 373 VLS 375 (413)
Q Consensus 373 i~~ 375 (413)
+.+
T Consensus 383 v~~ 385 (532)
T COG0578 383 VCE 385 (532)
T ss_pred HHH
Confidence 763
No 24
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.94 E-value=2.8e-24 Score=208.88 Aligned_cols=322 Identities=16% Similarity=0.186 Sum_probs=219.8
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHhCCeeEEeeceeeeCCC
Q 015088 23 AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS 98 (413)
Q Consensus 23 A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (413)
|+.|+++|++|+|||+++.. .++|..+++.++... ........+......|.++... .+.+.+.+.+...
T Consensus 1 ArdLa~rGl~V~llEk~d~~--~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~----~~~~~g~L~va~~ 74 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLA--HGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH----CVEDTGGLFITLP 74 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcc--cccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH----hccCCCceEEecC
Confidence 67899999999999998765 466777777776542 1111222333344455555432 3455666665432
Q ss_pred --ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceE
Q 015088 99 --ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEV 176 (413)
Q Consensus 99 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V 176 (413)
+...+..+...+...|++.+.++++++.+.+|. ++ +....+++.+ ++++||.+++..+.+.+.++|++++++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V 151 (516)
T TIGR03377 75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPN-LN-PDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKV 151 (516)
T ss_pred cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCC-CC-hhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 233345666667788888999999999999998 54 3445667777 589999999999999999999999999999
Q ss_pred EEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCC
Q 015088 177 KTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGG 251 (413)
Q Consensus 177 ~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 251 (413)
++|.. ++ +..+.|++ .+|+ +++|+.||+|+|+|+..+.+.. |...++.|.+|+++.++.... ...
T Consensus 152 ~~i~~--~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~lv~~~~~~--~~~---- 221 (516)
T TIGR03377 152 TGLIR--EG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFPAKGALLIMNHRIN--NTV---- 221 (516)
T ss_pred EEEEE--EC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc-CCCCceecceEEEEEECCccc--ccc----
Confidence 99987 62 23333443 3342 6999999999999999998876 888999999999998852211 100
Q ss_pred CCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC
Q 015088 252 DFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP 331 (413)
Q Consensus 252 ~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~ 331 (413)
.+......+. .|++|.. +...+|++.....+++....+ .+..+.|.+.+.+++|.+... .++..|+|+||...
T Consensus 222 -~~~~~~~~~g-~~~~P~~---~~~liGtT~~~~~~~~~~~~~-~~~v~~ll~~~~~~~P~l~~~-~i~~~~aGvRPl~~ 294 (516)
T TIGR03377 222 -INRCRKPSDA-DILVPGD---TISIIGTTSERIDDPDDLPVT-QEEVDVLLREGAKLAPMLAQT-RILRAFAGVRPLVA 294 (516)
T ss_pred -cccccCCCCC-cEEEECC---CeEEEecCCCCCCCCCCCCCC-HHHHHHHHHHHHHhCcccccC-CEEEEEeecccccC
Confidence 1111111122 4667752 444444433222223222222 237889999999999999865 68889999999764
Q ss_pred CC-----------CeEecC--CCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088 332 DE-----------DFVIDF--LGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS 375 (413)
Q Consensus 332 d~-----------~p~ig~--~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 375 (413)
+. ..+++. .+.. +|++.++| | .++.++.+|+.+++++.+
T Consensus 295 ~~~~~~~~~~sR~~~i~~~~~~~~~--~g~i~i~G--G-kltt~r~~Ae~~~d~~~~ 346 (516)
T TIGR03377 295 VDDDPSGRNISRGIVLLDHAERDGL--PGFITITG--G-KLTTYRLMAEWATDVVCK 346 (516)
T ss_pred CCCCCCccccCCCeEEeecccccCC--CCeEEEec--c-hHHHHHHHHHHHHHHHHH
Confidence 31 245552 2344 78999887 3 399999999999999974
No 25
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.93 E-value=2.3e-23 Score=198.07 Aligned_cols=228 Identities=18% Similarity=0.219 Sum_probs=168.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccCCCCCCCc-ccCCCceeecccC----CCChHHHHHHHHHHHHH
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFDFLHHRGS-SHGESRTIRATYP----EDYYHPMVLESCLLWEQ 77 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g-~~V~liE~~~~~gg~~~-s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 77 (413)
+.++||+|||||++|+++|++|++. + .+|+||||....+..++ +..+++.++.... .+....++.++.+.+.+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~ 122 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN 122 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999996 3 69999999865432122 1223333332211 11234455556666766
Q ss_pred HHHHhC----CeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccC-------CCCeEEEEe
Q 015088 78 AQSEIG----YKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEI-------PENWVGVAT 144 (413)
Q Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 144 (413)
+..++. ..++...+.+.+... +.+.+++.++.++..+.+.++++.+++.+.+|. +.. ++...+++.
T Consensus 123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~-v~~~~~~~~~~e~~~Al~~ 201 (497)
T PTZ00383 123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPR-VVLKNNHTLREEPLAALYV 201 (497)
T ss_pred HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcc-cccCccccccccceEEEEe
Confidence 665533 234567777776533 334466667777777777899999999999997 421 345678888
Q ss_pred cCC-ceeChHHHHHHHHHHHHH----CC--CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhh
Q 015088 145 ELG-GVIKPTKAVSMFQTLAIK----NG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLV 217 (413)
Q Consensus 145 ~~~-~~~~~~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~ 217 (413)
+.+ +.+||..+++.|.+.+++ .| ++++++++|++|.. .+ ++.+.|.|.+|+ ++||+||+|+|+|+..++
T Consensus 202 p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S~~La 277 (497)
T PTZ00383 202 PNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SN-DSLYKIHTNRGE-IRARFVVVSACGYSLLFA 277 (497)
T ss_pred CCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cC-CCeEEEEECCCE-EEeCEEEECcChhHHHHH
Confidence 877 689999999999999998 77 78999999999988 62 357888888886 999999999999999999
Q ss_pred hhhcCC--ccceeEEEEEEEEEE
Q 015088 218 KRITGL--ELPIQAVETTVCYWR 238 (413)
Q Consensus 218 ~~~~g~--~~~~~~~~g~~~~~~ 238 (413)
+++ |+ ..++.|.+|++....
T Consensus 278 ~~~-Gi~~~~~i~Pv~G~~~~~~ 299 (497)
T PTZ00383 278 QKM-GYGLEYSCLPVAGSFYFSG 299 (497)
T ss_pred HHh-CCCCCCCEEecCceEEEcC
Confidence 877 64 678999999876553
No 26
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.93 E-value=3.3e-23 Score=197.80 Aligned_cols=227 Identities=16% Similarity=0.144 Sum_probs=164.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCccc--CCCceeeccc-----CCC---ChH---------H
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSH--GESRTIRATY-----PED---YYH---------P 66 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~--~~~~~~~~~~-----~~~---~~~---------~ 66 (413)
+||+|||||++|+++|++|+++ |.+|+|+|+...++ ..+|. .+++.++... ... ... +
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a-~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~ 79 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA-AESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINE 79 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch-hhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHH
Confidence 5999999999999999999997 99999999976543 22332 3444333322 211 111 2
Q ss_pred HHHHHHHHHHHHHHH--hC--CeeEEeeceeeeCC--CChhhHHHHHHHHhhCCC--Cccc-cCHHHHHHHcCCcccC--
Q 015088 67 MVLESCLLWEQAQSE--IG--YKVYFKAHQFDMGP--SENKSLRSVIASCRKNSV--PHQV-LDCRQVLEKYSGRIEI-- 135 (413)
Q Consensus 67 l~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~~~~~~~-- 135 (413)
....+.++|..+.+. .. ..+..+++.+.+.. .+.+.+++..+.++..++ ..++ ++++++.+.+|. +..
T Consensus 80 ~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~-l~~~r 158 (483)
T TIGR01320 80 QFQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPL-MAAGR 158 (483)
T ss_pred HHHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCC-cccCC
Confidence 223567777776664 11 22233577777653 334456777777777776 3454 799999999997 432
Q ss_pred --CCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEc
Q 015088 136 --PENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVT 208 (413)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A 208 (413)
+....+++.+.++.+||..+++.|.+.+++.|++++++++|+++.. +++ +.|.+.+ .+|+ +++|++||+|
T Consensus 159 ~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 159 DFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSD-GSWTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred CCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CeEEEEEeeccCCceEEEECCEEEEC
Confidence 2356789999999999999999999999999999999999999987 532 3455542 3342 5899999999
Q ss_pred CCCChHHhhhhhcCCc----cceeEEEEEEEEEEec
Q 015088 209 AGAWVGKLVKRITGLE----LPIQAVETTVCYWRIK 240 (413)
Q Consensus 209 ~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~~ 240 (413)
+|+|+..+.+++ |+. .++.|.+|+++.++.+
T Consensus 236 AG~~s~~La~~~-Gi~~~~~~~i~P~~Gq~l~l~~~ 270 (483)
T TIGR01320 236 AGGGALPLLQKS-GIPEVKGFAGFPVSGLFLRCGNP 270 (483)
T ss_pred CCcchHHHHHHc-CCCcCCCCceeeeeEEEEEeCCH
Confidence 999999998877 664 5889999999887643
No 27
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=6.7e-24 Score=178.77 Aligned_cols=316 Identities=14% Similarity=0.029 Sum_probs=207.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHH
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLW 75 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g-------~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 75 (413)
..+|+|||+|+.|+++|+.+++.. .+|++++-+... ..++...+|.+++.. +.....++.......|
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e--~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l 80 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE--DTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL 80 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc--ccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence 468999999999999999998853 589999988766 456667777777664 3334556777778888
Q ss_pred HHHHHH--hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChH
Q 015088 76 EQAQSE--IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPT 153 (413)
Q Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
..+.+. -+..-........+... +.+.+....+.+.-..++.++.+++. .+|. . +..-........++.
T Consensus 81 ~~l~rs~~a~~aGV~l~sg~~ls~~--e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~----~--~~~G~~~Tt~~sE~~ 151 (342)
T KOG3923|consen 81 AHLARSEEAGEAGVCLVSGHILSDS--ESLDDQQRSWGDIVYGFRDLTERELL-GFPD----Y--STYGIHFTTYLSEGP 151 (342)
T ss_pred HHHhccccccccceEEeeeeeeccC--CCchhhhhhHHhhhhhhhcCCHHHhc-CCCC----c--cccceeEEEeeccch
Confidence 777662 22222222222222221 22233334444554556777777765 3443 2 111122223456778
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEE
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETT 233 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~ 233 (413)
.++..|.+.+.++|+++. ..+|.+++. - .+ -.+|.||+|+|.|+..|... + .+.|.||+
T Consensus 152 ~ylpyl~k~l~e~Gvef~-~r~v~~l~E--~----------~~---~~~DVivNCtGL~a~~L~gD----d-~~yPiRGq 210 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFV-QRRVESLEE--V----------AR---PEYDVIVNCTGLGAGKLAGD----D-DLYPIRGQ 210 (342)
T ss_pred hhhHHHHHHHHhcCcEEE-EeeeccHHH--h----------cc---CCCcEEEECCccccccccCC----c-ceeeccce
Confidence 999999999999999998 667877765 2 11 24899999999999877543 2 39999999
Q ss_pred EEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 015088 234 VCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR 313 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 313 (413)
++.++. ++.+. -.+. +....|++|-.+ +.+.++.....+++.+..+. ....|++++.++.|.+
T Consensus 211 Vl~V~A--pWvkh-------f~~~--D~~~ty~iP~~~--~V~lGg~~Q~g~w~~ei~~~----D~~dIl~rc~aL~P~l 273 (342)
T KOG3923|consen 211 VLKVDA--PWVKH-------FIYR--DFSRTYIIPGTE--SVTLGGTKQEGNWNLEITDE----DRRDILERCCALEPSL 273 (342)
T ss_pred EEEeeC--CceeE-------EEEe--cCCccEEecCCc--eEEEccccccCcccCcCChh----hHHHHHHHHHHhCccc
Confidence 998873 22211 1111 111148888754 55555554434444333221 5778999999999999
Q ss_pred CCCCCCeeeceeeeeecCCCCe---EecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088 314 VDSNGPVATQLCMYSITPDEDF---VIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374 (413)
Q Consensus 314 ~~~~~~~~~~~g~~~~t~d~~p---~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 374 (413)
... +++..|+|+||..+--+- ++..-... .-+.+..||||+|+++++++|-..+.++.
T Consensus 274 ~~a-~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~--~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~ 334 (342)
T KOG3923|consen 274 RHA-EIIREWVGLRPGRKQVRLEAELRTRGGKR--LTVVHNYGHGGNGFTLGWGTALEAAKLVL 334 (342)
T ss_pred ccc-eehhhhhcccCCCCceeeeeeeecCCCcc--ceeEeeccCCCCceecccchHHHHHHHHH
Confidence 986 899999999997765221 11111111 22589999999999999999999888876
No 28
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.92 E-value=3.6e-22 Score=190.74 Aligned_cols=231 Identities=17% Similarity=0.156 Sum_probs=164.4
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcc-cCCCceeecc-----cCCC---ChHHH-----
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSS-HGESRTIRAT-----YPED---YYHPM----- 67 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s-~~~~~~~~~~-----~~~~---~~~~l----- 67 (413)
.+.++||+|||||++|+++|++|+++ |.+|+||||....+..+++ +.+++..+.. +... ....+
T Consensus 2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~ 81 (494)
T PRK05257 2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVK 81 (494)
T ss_pred CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHH
Confidence 34578999999999999999999985 7899999998754322222 2344443332 2110 11111
Q ss_pred ----HHHHHHHHHHHHHHhCC--e---eEEeeceeeeCCC--ChhhHHHHHHHHhhCCC--Cccc-cCHHHHHHHcCCcc
Q 015088 68 ----VLESCLLWEQAQSEIGY--K---VYFKAHQFDMGPS--ENKSLRSVIASCRKNSV--PHQV-LDCRQVLEKYSGRI 133 (413)
Q Consensus 68 ----~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~~~~~ 133 (413)
...+.++|..+.+. ++ + ++..++.+.+... +.+.+++.++.++..++ ..++ ++.+++.+.+|. +
T Consensus 82 ~~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~-l 159 (494)
T PRK05257 82 INEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPL-M 159 (494)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcc-c
Confidence 14566777776554 32 1 2346677766533 23445677777777776 3455 488899999997 4
Q ss_pred c----CCCCeEEEEecCCceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcC
Q 015088 134 E----IPENWVGVATELGGVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGK 203 (413)
Q Consensus 134 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad 203 (413)
. .++...+++.+.++.+|+..+++.|.+.+++.| ++++++++|+++.. +++ +.|.+.+ .+|+ +++|+
T Consensus 160 ~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~d-g~~~v~~~~~~~G~~~~i~A~ 236 (494)
T PRK05257 160 MEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDD-GSWTVTVKDLKTGEKRTVRAK 236 (494)
T ss_pred ccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCC-CCEEEEEEEcCCCceEEEEcC
Confidence 2 234677899999999999999999999999987 89999999999987 532 3355553 3453 58999
Q ss_pred EEEEcCCCChHHhhhhhcCCc----cceeEEEEEEEEEEec
Q 015088 204 KCVVTAGAWVGKLVKRITGLE----LPIQAVETTVCYWRIK 240 (413)
Q Consensus 204 ~VV~A~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~~ 240 (413)
+||+|+|+|+..+++.+ |+. .++.|.+|+++.++.+
T Consensus 237 ~VVvaAGg~s~~L~~~~-Gi~~~~~~~i~PvrGq~l~~~~~ 276 (494)
T PRK05257 237 FVFIGAGGGALPLLQKS-GIPEAKGYGGFPVSGQFLVCENP 276 (494)
T ss_pred EEEECCCcchHHHHHHc-CCCccCCCCeeeeeEEEEEcCCH
Confidence 99999999999998876 665 4799999999888643
No 29
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.92 E-value=5.2e-23 Score=194.80 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=170.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcc--cCCCceeec-----ccCCCC---hHHHH----
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSS--HGESRTIRA-----TYPEDY---YHPMV---- 68 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s--~~~~~~~~~-----~~~~~~---~~~l~---- 68 (413)
+..+||+|||||++|+++|+.|++. +.+|+|+||.+.++ ..+| +.+++..+. .|.... ...+.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a-~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~ 82 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA-IESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKE 82 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc-hhcCCCccccCcceeeehhhccCCcccCCcccHHHHHH
Confidence 4568999999999999999999998 89999999944443 3344 334444333 333222 22233
Q ss_pred -----HHHHHHHHHHHHH--hC--CeeEEeeceeeeC--CCChhhHHHHHHHHhhCCC--Ccccc-CHHHHHHHcCCccc
Q 015088 69 -----LESCLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQVL-DCRQVLEKYSGRIE 134 (413)
Q Consensus 69 -----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~~~~~~ 134 (413)
..+.++|..+.+. ++ ..++.+.+.+.+. ..+.+.+++.++.++..++ ..+++ +.+++.+.+|. +.
T Consensus 83 i~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~-l~ 161 (497)
T PRK13339 83 INEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPL-MM 161 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCc-cc
Confidence 5667788776652 22 2345666766665 3345557777888888877 77888 79999999998 44
Q ss_pred CC----CCeEEEEecCCceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCE
Q 015088 135 IP----ENWVGVATELGGVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKK 204 (413)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~ 204 (413)
.. +...+++.+.++.+|+..+.+.|.+.+++. |++++++++|+++.. .+ ++.|.+. +.+++ +++||+
T Consensus 162 ~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~-d~~w~v~v~~t~~g~~~~i~Ad~ 238 (497)
T PRK13339 162 PGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LS-DGGWEVTVKDRNTGEKREQVADY 238 (497)
T ss_pred CCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CC-CCCEEEEEEecCCCceEEEEcCE
Confidence 22 446789999999999999999999999754 899999999999987 52 2456664 45552 589999
Q ss_pred EEEcCCCChHHhhhhhcCCc----cceeEEEEEEEEEEe
Q 015088 205 CVVTAGAWVGKLVKRITGLE----LPIQAVETTVCYWRI 239 (413)
Q Consensus 205 VV~A~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~ 239 (413)
||+|+|+|+..+++++ |+. .++.|.+|+++.++.
T Consensus 239 VV~AAGawS~~La~~~-Gi~~~~~~~i~PvkGq~l~l~~ 276 (497)
T PRK13339 239 VFIGAGGGAIPLLQKS-GIPESKHLGGFPISGQFLRCTN 276 (497)
T ss_pred EEECCCcchHHHHHHc-CCCccCCCceEeeeEEEEEecC
Confidence 9999999999999887 664 689999999988874
No 30
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=152.79 Aligned_cols=352 Identities=18% Similarity=0.197 Sum_probs=234.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeeccc---CCCChHHHHHHHHHHHHHHH
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYHPMVLESCLLWEQAQ 79 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 79 (413)
..++|+||||||+.|++.|.+|.-+ +.+|.|+|+....+ .-.|..+++.++... +...-.+++.++.++.-++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la-~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA-VHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc-eeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 3579999999999999999999987 89999999987764 345556777777542 33445678888888888888
Q ss_pred HHhCCeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088 80 SEIGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV 156 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+.++. +...|.+.+... +...+..+.......+++ .++++..++.+..|. -....+++.|..|.+|-..+.
T Consensus 125 ~e~~Ip-yKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~----crgvkAl~sPhtGIvD~~~v~ 199 (453)
T KOG2665|consen 125 DEKKIP-YKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPY----CRGVKALLSPHTGIVDWGSVT 199 (453)
T ss_pred hhcCCC-hhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChh----hhhhhhhcCCCcceeehHHHH
Confidence 887776 566777776543 344566777776677765 689999999988886 345567889999999999999
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCC---CeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC--ccceeEEE
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK---GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL--ELPIQAVE 231 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~---~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~--~~~~~~~~ 231 (413)
..+.+.++..|.++.++-++..+.. .... --+.|....+++++.+.||-|+|..+..+.... |. +..+.|.+
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~--n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~s-gc~~dPriVpfr 276 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQ--NKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALS-GCELDPRIVPFR 276 (453)
T ss_pred HHHHHHHHHhcccccccceeccchh--ccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHh-CCCCCCeeeecc
Confidence 9999999999999999999999976 4211 124454445778999999999999887666544 53 23467888
Q ss_pred EEEEEEEecCC--CCCcccc--CCCCCeEEEcCCCceEecCCCCCCCcEEEecC------------CCCCCCCCCC----
Q 015088 232 TTVCYWRIKEG--NEADYAV--GGDFPSFASYGDPYIYGTPSLEYPGLIKIALH------------GGYPCDPDRR---- 291 (413)
Q Consensus 232 g~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~------------~~~~~~~~~~---- 291 (413)
|.++.++...- ....+-| +..+|.. .+..+|+.+ |.++++.+ ......+..+
T Consensus 277 G~ylll~~ek~h~vk~niyPvpd~RFpfl------GvhftPrm~--g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~ 348 (453)
T KOG2665|consen 277 GEYLLLKPEKLHLVKGNIYPVPDPRFPFL------GVHFTPRMD--GSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEY 348 (453)
T ss_pred chhhhcChHHhccccCceeeCCCCCCccc------cccccCcCC--CceecCCCceEEEEEEeeccccccccchhhheec
Confidence 88776652211 0111111 1122211 122333322 21221110 0001111100
Q ss_pred -----------CCCCc-----hhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeec--CCCC----eEecCCCCCCCCCEE
Q 015088 292 -----------PWGPG-----LLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSIT--PDED----FVIDFLGGEFGEDVV 349 (413)
Q Consensus 292 -----------~~~~~-----~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t--~d~~----p~ig~~~~~~~~~~~ 349 (413)
++... .++..-...+++++|++.+. .+....+|+|+.. .|+. +++..-.....+++.
T Consensus 349 sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~-di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~ll 427 (453)
T KOG2665|consen 349 SGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDS-DIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLL 427 (453)
T ss_pred CchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCcccccc-ccccCcccccchhccCCCCCchheEEecCccccccceE
Confidence 00001 13333447789999999975 5667889999533 3332 233222222357888
Q ss_pred EEeCCCCCCCccchHHHHHHHHHHh
Q 015088 350 VAGGFSGHGFKMAPAVGRILADLVL 374 (413)
Q Consensus 350 ~~~G~~~~G~~~a~~~a~~la~~i~ 374 (413)
..-+.-+.|.+.+.++|+++|+.++
T Consensus 428 h~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 428 HVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred EecCCCCccchhhHHHHHHHHHHhc
Confidence 8888889999999999999998765
No 31
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.79 E-value=3.4e-18 Score=155.56 Aligned_cols=338 Identities=16% Similarity=0.160 Sum_probs=201.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChH-------HHHHHHHHHH
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYH-------PMVLESCLLW 75 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~-------~l~~~~~~~~ 75 (413)
...+||+|||||.+|.-+|+-.+-+|++|.|+|++++.. |+|..+...++... ...... ++..+++..-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S--GTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER 142 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS--GTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNER 142 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccC--CccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999974 45545555554321 111111 2222222222
Q ss_pred HHHHHHhC-----CeeEEee------ceeeeCCCChhhHHHHHHHHh--hCCCCccccCHHHHHHHcCCcccCCCCeEEE
Q 015088 76 EQAQSEIG-----YKVYFKA------HQFDMGPSENKSLRSVIASCR--KNSVPHQVLDCRQVLEKYSGRIEIPENWVGV 142 (413)
Q Consensus 76 ~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (413)
..+.+... +++..+. ..+++.- +.+++.. +.--...++++++..+.+|. +. .+...+.
T Consensus 143 ~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~-------K~YD~vAG~k~Lk~S~~lSk~~alE~fPm-L~-~~~L~Ga 213 (680)
T KOG0042|consen 143 ANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGL-------KIYDLVAGSKNLKSSYFLSKKEALEIFPM-LR-KDNLKGA 213 (680)
T ss_pred HHHhhcCccccCCcceeeehhhhhhhhheeecc-------eeeeeeccccccccceeecHHHHHHhCcc-cc-ccCceeE
Confidence 22221111 0111100 0000000 0111111 00112368899999999998 65 5566666
Q ss_pred EecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhh
Q 015088 143 ATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLV 217 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~ 217 (413)
+...+|+.|..++.-.+.--+.++|..+....+|.++.. ++++....++. -.|+ +|+|+.||+|||+++..+.
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llk--d~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr 291 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLK--DKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIR 291 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhh--CCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHH
Confidence 777778889999998888888999999999999999987 64443333332 2344 7899999999999999887
Q ss_pred hhhcCCccc--eeEEEEEEEEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCC
Q 015088 218 KRITGLELP--IQAVETTVCYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPW 293 (413)
Q Consensus 218 ~~~~g~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (413)
++- ....+ +.|..|.++.+ |. -+.|+ .+-.+. ..+++.+|+.|+. |..+.|+++.. ..+...+.
T Consensus 292 ~Md-d~~~~~i~~pSsGvHIVl--P~----yY~P~-~mGlldP~TsDgRViFflPWq---g~TIaGTTD~p-t~v~~~P~ 359 (680)
T KOG0042|consen 292 KMD-DEDAKPICVPSSGVHIVL--PG----YYCPE-NMGLLDPKTSDGRVIFFLPWQ---GKTIAGTTDIP-TSVTHSPT 359 (680)
T ss_pred hhc-ccccCceeccCCceeEEc--cc----ccCCc-ccccccCCCCCCcEEEEeccC---CceeeccCCCC-CCCCCCCC
Confidence 765 33222 44555555433 22 12221 122222 2345668888986 44445554433 22222222
Q ss_pred CCchhHHHHHHHHHhhcCCCCCC--CCCeeeceeeeeecCCCCe-----------EecCCCCCCCCCEEEEeCCCCCCCc
Q 015088 294 GPGLLLDSLKEWIQGRFAGRVDS--NGPVATQLCMYSITPDEDF-----------VIDFLGGEFGEDVVVAGGFSGHGFK 360 (413)
Q Consensus 294 ~~~~~~~~l~~~~~~~~p~~~~~--~~~~~~~~g~~~~t~d~~p-----------~ig~~~~~~~~~~~~~~G~~~~G~~ 360 (413)
..++.++.|++.++.++-.--++ ..+...|+|+||...|..+ +|..-| .|+...+| .=++
T Consensus 360 PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaG---GKWT 432 (680)
T KOG0042|consen 360 PTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAG---GKWT 432 (680)
T ss_pred CCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEec---Ccch
Confidence 23447888999998887543222 2356689999998766532 222222 57777775 2345
Q ss_pred cchHHHHHHHHHHh
Q 015088 361 MAPAVGRILADLVL 374 (413)
Q Consensus 361 ~a~~~a~~la~~i~ 374 (413)
.=-..||...+.+.
T Consensus 433 TyR~MAEeTVd~aI 446 (680)
T KOG0042|consen 433 TYRHMAEETVDAAI 446 (680)
T ss_pred hHHHHHHHHHHHHH
Confidence 55556666665554
No 32
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.74 E-value=3.9e-16 Score=148.18 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=54.7
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~ 228 (413)
.+....+.+.|.+.+++.|++++++++|+++.. ++ +..+.+.+ +|.+++|+.||.|+|.++ .+.+.+ ++..+..
T Consensus 104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~-g~v~~v~~-~g~~i~A~~VI~A~G~~s-~l~~~l-gl~~~~~ 177 (428)
T PRK10157 104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ--RD-GKVVGVEA-DGDVIEAKTVILADGVNS-ILAEKL-GMAKRVK 177 (428)
T ss_pred eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE--eC-CEEEEEEc-CCcEEECCEEEEEeCCCH-HHHHHc-CCCCCCC
Confidence 445577888999999999999999999999987 62 23334444 555699999999999876 455554 6554333
Q ss_pred E
Q 015088 229 A 229 (413)
Q Consensus 229 ~ 229 (413)
+
T Consensus 178 ~ 178 (428)
T PRK10157 178 P 178 (428)
T ss_pred C
Confidence 3
No 33
>PRK06185 hypothetical protein; Provisional
Probab=99.73 E-value=7.4e-16 Score=146.36 Aligned_cols=221 Identities=12% Similarity=0.040 Sum_probs=122.9
Q ss_pred eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCe--EEEEcCCCc-EEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE-KFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
+....+.+.|.+.+.+. |++++++++|+++.. +++ .. +.+.+.+|+ +++||.||.|+|.+|. +.+.+ ++..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--~~~-~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~-gi~~ 179 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--EGG-RVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALA-GLEV 179 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--eCC-EEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHc-CCCc
Confidence 44467778888877765 899999999999987 632 33 344555664 7999999999999984 54444 7777
Q ss_pred ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHH
Q 015088 226 PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW 305 (413)
Q Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (413)
+..++.+.+++++++..... +...+..+ ..+..+.+.|.. +.+.++... +++......+...+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~g~~~llP~~---~~~~i~~~~----~~~~~~~~~~~~~~~~~~~ 247 (407)
T PRK06185 180 REFGAPMDVLWFRLPREPDD---PESLMGRF--GPGQGLIMIDRG---DYWQCGYVI----PKGGYAALRAAGLEAFRER 247 (407)
T ss_pred cccCCCceeEEEecCCCCCC---CcccceEe--cCCcEEEEEcCC---CeEEEEEEe----cCCCchhhhhhhHHHHHHH
Confidence 77777777776665431110 00001111 223335566653 223222211 1111100011135667777
Q ss_pred HHhhcCCCCCCCCCeeecee--e--------eeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh-
Q 015088 306 IQGRFAGRVDSNGPVATQLC--M--------YSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL- 374 (413)
Q Consensus 306 ~~~~~p~~~~~~~~~~~~~g--~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~- 374 (413)
+.+.+|.+......+..|.. . ..+..++..++|.. .+....++|+|+.+|.--|..+++.+.
T Consensus 248 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDA-------Ah~~~P~~GqG~nlgl~Da~~La~~l~~ 320 (407)
T PRK06185 248 VAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDA-------AHAMSPVGGVGINLAIQDAVAAANILAE 320 (407)
T ss_pred HHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEecc-------ccccCcccccchhHHHHHHHHHHHHHHH
Confidence 77777764321011111211 1 12344566666654 345566788999999866655555554
Q ss_pred ---cCCCCccccccccccccccC
Q 015088 375 ---SGEAQGVELQHFRISRFKEN 394 (413)
Q Consensus 375 ---~g~~~~~~~~~~~~~R~~~~ 394 (413)
.++.....++.|.-.|..+.
T Consensus 321 ~~~~~~~~~~~L~~Y~~~R~~~~ 343 (407)
T PRK06185 321 PLRRGRVSDRDLAAVQRRREFPT 343 (407)
T ss_pred HhccCCccHHHHHHHHHHhhhHH
Confidence 33222234667776665553
No 34
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.71 E-value=1.5e-15 Score=143.51 Aligned_cols=184 Identities=17% Similarity=0.219 Sum_probs=106.4
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHH
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQS 80 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (413)
|. +...+||+|||||++|+++|+.|+++|++|+|||+......... .. ..+.....+...++ .+.+..|+.+.+
T Consensus 1 ~~-~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~-~~---~~r~~~l~~~~~~~-l~~lGl~~~~~~ 74 (392)
T PRK08773 1 MS-RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQAD-QP---DLRVYAFAADNAAL-LDRLGVWPAVRA 74 (392)
T ss_pred CC-CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccC-CC---CCEEEEecHHHHHH-HHHCCchhhhhH
Confidence 44 34568999999999999999999999999999999865321110 00 00100011111111 222333444332
Q ss_pred HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ 160 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
.....+ . .+.+..... +... .++... +. .. ..+..++...+.+.|.
T Consensus 75 ~~~~~~-~---~~~~~~~~~-------------~~~~-~~~~~~--------~~-~~-------~~~~~v~~~~l~~~L~ 120 (392)
T PRK08773 75 ARAQPY-R---RMRVWDAGG-------------GGEL-GFDADT--------LG-RE-------QLGWIVENDLLVDRLW 120 (392)
T ss_pred hhCCcc-c---EEEEEeCCC-------------CceE-Eechhc--------cC-CC-------cCEEEEEhHHHHHHHH
Confidence 211110 0 000000000 0000 000000 00 00 0113456678889999
Q ss_pred HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEE
Q 015088 161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAV 230 (413)
Q Consensus 161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~ 230 (413)
+.+++.|++++++++|++++. + ++.+.+++.+|+++++|.||.|+|.++ .+.+.+ ++..+...+
T Consensus 121 ~~~~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~-g~~~~~~~~ 184 (392)
T PRK08773 121 AALHAAGVQLHCPARVVALEQ--D--ADRVRLRLDDGRRLEAALAIAADGAAS-TLRELA-GLPVSRHDY 184 (392)
T ss_pred HHHHhCCCEEEcCCeEEEEEe--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhh-cCCceEEEe
Confidence 999999999999999999988 6 456778888888899999999999998 455544 666554433
No 35
>PRK06834 hypothetical protein; Provisional
Probab=99.67 E-value=2e-14 Score=138.45 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA 229 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~ 229 (413)
-..+.+.|.+.+++.|++++++++|++++. + ++.+.+++.+|+++++|+||.|+|.+|. +-+.+ ++..+-..
T Consensus 99 q~~le~~L~~~l~~~gv~i~~~~~v~~v~~--~--~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~l-gi~~~g~~ 170 (488)
T PRK06834 99 QNHIERILAEWVGELGVPIYRGREVTGFAQ--D--DTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAA-GIDFPGWD 170 (488)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhc-CCCCCCCC
Confidence 356778888888888999999999999988 6 4567777777778999999999999983 44433 76655443
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.66 E-value=2.7e-15 Score=133.59 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=103.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce-eecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
.+||+|||||+||+.||..++++|++|+|||+....|---.-.+.+++ +.+... .+++....+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--------------~~~~ls~~p-- 66 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--------------PDEFLSRNP-- 66 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc--------------HHHHHHhCC--
Confidence 689999999999999999999999999999999876422111121211 111111 111111100
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
..+.+....-..-.-..++++.+.+|+++..-+ .-+.||. ......++++|.+.+++
T Consensus 67 ---~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~---~Gr~Fp~-----------------sdkA~~Iv~~ll~~~~~ 123 (408)
T COG2081 67 ---GNGHFLKSALARFTPEDFIDWVEGLGIALKEED---LGRMFPD-----------------SDKASPIVDALLKELEA 123 (408)
T ss_pred ---CcchHHHHHHHhCCHHHHHHHHHhcCCeeEEcc---CceecCC-----------------ccchHHHHHHHHHHHHH
Confidence 000000000000011345556666666532221 1111221 01236789999999999
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.||+++++++|.++.. + +..+.+.+++|++++||.+|+|+|+.|
T Consensus 124 ~gV~i~~~~~v~~v~~--~--~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 124 LGVTIRTRSRVSSVEK--D--DSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred cCcEEEecceEEeEEe--c--CceEEEEcCCCCEEEccEEEEecCCcC
Confidence 9999999999999998 7 478999999997799999999999755
No 37
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.66 E-value=1.2e-14 Score=137.01 Aligned_cols=224 Identities=12% Similarity=0.035 Sum_probs=115.1
Q ss_pred eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
.++...+.+.|.+.+.+. |++++++++|+++.. + ++.+.+.+.+|++++||.||.|+|.+|. +.+.+ ++..+.
T Consensus 101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l-~~~~~~ 174 (382)
T TIGR01984 101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIR--N--QDYVRVTLDNGQQLRAKLLIAADGANSK-VRELL-SIPTEE 174 (382)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCChH-HHHHc-CCCCcc
Confidence 356678999999999884 999999999999987 6 4567788888888999999999999874 54544 554443
Q ss_pred eEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 015088 228 QAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQ 307 (413)
Q Consensus 228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (413)
.......+...++..... . ............+++.|..+... +.+.............+...+...+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (382)
T TIGR01984 175 HDYNQTALIANIRHEQPH---Q--GCAFERFTPHGPLALLPLKDNYR-SSLVWCLPSKQADTIANLPDAEFLAELQQAFG 248 (382)
T ss_pred cccCCEEEEEEEEecCCC---C--CEEEEeeCCCCCeEECcCCCCCC-EEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322222222222211110 0 01111112223466667654212 22211110000000001111112333333332
Q ss_pred hhcCCCCCCCCCeeece----eeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCC---CCc
Q 015088 308 GRFAGRVDSNGPVATQL----CMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGE---AQG 380 (413)
Q Consensus 308 ~~~p~~~~~~~~~~~~~----g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~---~~~ 380 (413)
..+..+... .....|. ....+..++..++| +-.+...-++|.|+.+|.--|..|++.+.... ...
T Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~ 320 (382)
T TIGR01984 249 WRLGKITQV-GERKTYPLKLRIAETHVHPRVVLIG-------NAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTY 320 (382)
T ss_pred hhccCeEEc-CCccEeecchhhhhheecCCEEEEe-------ecccccCCccccchhhhHHHHHHHHHHHHHhccCccCH
Confidence 222222111 0111110 01112223344444 33556667889999999999999998886421 112
Q ss_pred cccccccccccc
Q 015088 381 VELQHFRISRFK 392 (413)
Q Consensus 381 ~~~~~~~~~R~~ 392 (413)
..++.|.-.|..
T Consensus 321 ~~l~~Y~~~r~~ 332 (382)
T TIGR01984 321 ALLQEYLRRRQF 332 (382)
T ss_pred HHHHHHHHHHHH
Confidence 346667766643
No 38
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.65 E-value=1.9e-14 Score=135.84 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=59.5
Q ss_pred ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088 148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELP 226 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~ 226 (413)
..++...+.+.|.+.+++.| ++++ +++|+++.. + ++.+.+++.+|++++||.||.|+|.++. +.+.+ +...+
T Consensus 106 ~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~-~~~~~ 178 (388)
T PRK07608 106 WIVESSLIERALWAALRFQPNLTWF-PARAQGLEV--D--PDAATLTLADGQVLRADLVVGADGAHSW-VRSQA-GIKAE 178 (388)
T ss_pred EEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe--c--CCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhc-CCCcc
Confidence 34567888999999998887 9999 999999977 5 4567788888877999999999999985 44444 66555
Q ss_pred eeEE
Q 015088 227 IQAV 230 (413)
Q Consensus 227 ~~~~ 230 (413)
..+.
T Consensus 179 ~~~~ 182 (388)
T PRK07608 179 RRPY 182 (388)
T ss_pred cccc
Confidence 5554
No 39
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.65 E-value=3e-14 Score=129.33 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=105.2
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGEKFWGKKCVVTAGAWVGKLVKRITGLELP 226 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~ 226 (413)
..++...+.+.|.+.+.+.|++++++++|+++.. + ++.+.+... ++.++++|.||.|+|.++. +.+.+ +....
T Consensus 86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~--~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~-~~~~~ 159 (295)
T TIGR02032 86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI--H--DDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKL-GLRKE 159 (295)
T ss_pred EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--e--CCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhc-CCCCC
Confidence 3466678889999999999999999999999987 6 344444433 3447999999999999873 44444 44321
Q ss_pred -eeEEEEEEEEEEecCCCCCccccCCCCCeEEEc---CCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088 227 -IQAVETTVCYWRIKEGNEADYAVGGDFPSFASY---GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL 302 (413)
Q Consensus 227 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (413)
.....+....+..+.. .+.+ .....+... .....|..|..+ +.+.++....... .. ....+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~P~~~--~~~~v~~~~~~~~----~~---~~~~~~~ 226 (295)
T TIGR02032 160 PRELGVAARAEVEMPDE---EVDE-DFVEVYIDRGISPGGYGWVFPKGD--GTANVGVGSRSAE----EG---EDLKKYL 226 (295)
T ss_pred CcceeeEEEEEEecCCc---ccCc-ceEEEEcCCCcCCCceEEEEeCCC--CeEEEeeeeccCC----CC---CCHHHHH
Confidence 1122222223332211 1111 001111111 124567777644 3233322110110 11 1134444
Q ss_pred HHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEe-------CCCCCCCccchHHHHHHHHH
Q 015088 303 KEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAG-------GFSGHGFKMAPAVGRILADL 372 (413)
Q Consensus 303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~-------G~~~~G~~~a~~~a~~la~~ 372 (413)
.+++ +.+|.+.+. +....+.+..++.....+.. .+++++.+ -+.|.|+.+|---|.++|+.
T Consensus 227 ~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-------~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 227 KDFL-ARRPELKDA-ETVEVIGAPIPIGRPDDKTV-------RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV 294 (295)
T ss_pred HHHH-HhCcccccC-cEEeeeceeeccCCCCCccc-------cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence 4444 456766543 34444555555432222111 13444433 36788999998888888764
No 40
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.65 E-value=4.9e-14 Score=132.78 Aligned_cols=155 Identities=25% Similarity=0.314 Sum_probs=96.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC--C
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG--Y 84 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 84 (413)
++||+|||||+||++||+.|+++|++|+|+|++...|....+. +.+... .++++..... +
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~---~~~~~~---------------~l~~l~~~~~~~i 64 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG---GGLSPR---------------ALEELIPDFDEEI 64 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc---ceechh---------------hHHHhCCCcchhh
Confidence 6899999999999999999999999999999988875433321 111000 0000000000 0
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEe--cCCceeChHHHHHHHHHH
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVAT--ELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 162 (413)
........ +..+.....+.. ..+..++-..+.++|.+.
T Consensus 65 ~~~v~~~~----------------------------------------~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~ 104 (396)
T COG0644 65 ERKVTGAR----------------------------------------IYFPGEKVAIEVPVGEGYIVDRAKFDKWLAER 104 (396)
T ss_pred heeeeeeE----------------------------------------EEecCCceEEecCCCceEEEEhHHhhHHHHHH
Confidence 00000000 000000001111 235667778999999999
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE 224 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~ 224 (413)
+++.|++++.+++|+++.. +++ +.+.....++.+++|+.||.|+|..+ .+.+.+ +..
T Consensus 105 A~~aGae~~~~~~~~~~~~--~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~l-g~~ 161 (396)
T COG0644 105 AEEAGAELYPGTRVTGVIR--EDD-GVVVGVRAGDDEVRAKVVIDADGVNS-ALARKL-GLK 161 (396)
T ss_pred HHHcCCEEEeceEEEEEEE--eCC-cEEEEEEcCCEEEEcCEEEECCCcch-HHHHHh-CCC
Confidence 9999999999999999988 632 33333333335699999999999866 455555 554
No 41
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.65 E-value=3e-14 Score=134.50 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=56.8
Q ss_pred eeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 149 VIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
.++...+.+.|.+.+.+.| ++++++++|+++.. + ++.+.+.+.+|+++++|.||.|+|.++. +.+.+ +...
T Consensus 102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l-~~~~ 173 (385)
T TIGR01988 102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPR--H--SDHVELTLDDGQQLRARLLVGADGANSK-VRQLA-GIPT 173 (385)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--c--CCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHc-CCCc
Confidence 3455788899999998887 99999999999987 6 4567788888888999999999999874 44444 5443
No 42
>PLN02697 lycopene epsilon cyclase
Probab=99.65 E-value=9e-14 Score=133.41 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=112.1
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhc-CCccc
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRIT-GLELP 226 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~-g~~~~ 226 (413)
+.++...+.+.|.+.+.+.|+++ .+++|+++.. +++ ....+.+.+|.+++|+.||.|+|.++..++.... +...+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~--~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~ 262 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITE--ASD-GLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVC 262 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEE--cCC-cEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcc
Confidence 45778889999999998899998 4789999987 522 2223445677779999999999999965543110 22345
Q ss_pred eeEEEEEEEEEEecCCCCCccccCCCCCeEEEc--------------CCCceEecCCCCCCCcEEE-ecCCCCCCCCCCC
Q 015088 227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASY--------------GDPYIYGTPSLEYPGLIKI-ALHGGYPCDPDRR 291 (413)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~y~~p~~~~~~~~~~-~~~~~~~~~~~~~ 291 (413)
.....|..+.+..++.... ...+... ...++|+.|..+ +.+.+ ++... ..|..
T Consensus 263 ~Q~a~Gi~ve~~~~~~d~~-------~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~--~~~~VE~T~l~--~~~~l- 330 (529)
T PLN02697 263 VQTAYGVEVEVENNPYDPS-------LMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSS--TRVFFEETCLA--SKDAM- 330 (529)
T ss_pred cEEEEEEEEEecCCCCCcc-------hheeeccccccccccccccCCCceEEEEeecCC--CeEEEEEeeec--cCCCC-
Confidence 6777777665543221111 1122110 113578888754 22333 22110 01111
Q ss_pred CCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC------CCCeEecCCCCCCCCCEEEEeCCCCCCC----cc
Q 015088 292 PWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP------DEDFVIDFLGGEFGEDVVVAGGFSGHGF----KM 361 (413)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~------d~~p~ig~~~~~~~~~~~~~~G~~~~G~----~~ 361 (413)
..+...+.|.+++.+. .+.. .++++.-.|+.|+.. ++...||.-... +.=+ +|.|+ ..
T Consensus 331 --~~~~l~~~L~~~l~~~--Gi~~-~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~----vhPs---TGy~v~~~l~~ 398 (529)
T PLN02697 331 --PFDLLKKRLMSRLETM--GIRI-LKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASM----VHPA---TGYSVVRSLSE 398 (529)
T ss_pred --CHHHHHHHHHHHHHhC--CCCc-ceEEEEEeeeecCCCCCcccCCCeeEeehhhcC----CCCc---hhhhHHHHHHh
Confidence 1111444555555543 2322 245667778878742 122233322111 2222 23455 78
Q ss_pred chHHHHHHHHHHhcCC
Q 015088 362 APAVGRILADLVLSGE 377 (413)
Q Consensus 362 a~~~a~~la~~i~~g~ 377 (413)
||.+|+.+|+.+..+.
T Consensus 399 A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 399 APKYASVIARILKNVS 414 (529)
T ss_pred HHHHHHHHHHHhhCCc
Confidence 8889999998887554
No 43
>PRK06847 hypothetical protein; Provisional
Probab=99.64 E-value=1.2e-13 Score=129.91 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=53.9
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..++...+.+.|.+.+.+.|++++++++|++++. + ++.+.+.+.+|+++++|.||.|+|.++.
T Consensus 102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQ--D--DDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE--c--CCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 3456678889999999888999999999999987 6 4567788888888999999999999884
No 44
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.63 E-value=7.5e-15 Score=138.56 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=54.5
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELP 226 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~ 226 (413)
.++...+.+.|.+.+.+.+...+++++|++++. + ++.+.+++++|+++++|.||.|+|.+|. +.+.+ ++...
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~~ 178 (388)
T PRK07494 107 NIPNWLLNRALEARVAELPNITRFGDEAESVRP--R--EDEVTVTLADGTTLSARLVVGADGRNSP-VREAA-GIGVR 178 (388)
T ss_pred EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEE--c--CCeEEEEECCCCEEEEeEEEEecCCCch-hHHhc-CCCce
Confidence 355567888888888877533377999999987 6 4567788888888999999999999884 44444 55443
No 45
>PRK08244 hypothetical protein; Provisional
Probab=99.63 E-value=1.3e-13 Score=133.98 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=109.6
Q ss_pred eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--cCCC-cEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088 150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSNG-EKFWGKKCVVTAGAWVGKLVKRITGLELP 226 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g-~~i~ad~VV~A~G~~s~~l~~~~~g~~~~ 226 (413)
+.-..+.+.|.+.+++.|++++++++|+++.. + ++.+.+. ..+| +++++|+||.|+|.+|. +-+.+ ++..+
T Consensus 97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~l-gi~~~ 170 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQ--D--GDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQA-GIAFP 170 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--c--CCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhc-CCCcc
Confidence 34456778888888888999999999999987 6 3444443 3356 37999999999999883 33333 54432
Q ss_pred eeE--EEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCC-CCCCCCCCchhHHHHH
Q 015088 227 IQA--VETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCD-PDRRPWGPGLLLDSLK 303 (413)
Q Consensus 227 ~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 303 (413)
-.. .......+...... . .....+. .....+++.|..+ +.+.+......... +..... ..+++.
T Consensus 171 g~~~~~~~~~~~~~~~~~~-----~-~~~~~~~-~~~g~~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 237 (493)
T PRK08244 171 GTDATFTAMLGDVVLKDPP-----P-SSVLSLC-TREGGVMIVPLSG--GIYRVLIIDPERPQVPKDEPV----TLEELK 237 (493)
T ss_pred CCCcceEEEEEEEEecCCC-----C-cceeEEE-eCCceEEEEECCC--CeEEEEEEcCCcccccCCCCC----CHHHHH
Confidence 111 12222222221110 0 0011111 2223456666643 33322221111000 111111 345566
Q ss_pred HHHHhhcCCCCCCCCCeeeceeee--------eecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHH----HHHHH
Q 015088 304 EWIQGRFAGRVDSNGPVATQLCMY--------SITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVG----RILAD 371 (413)
Q Consensus 304 ~~~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a----~~la~ 371 (413)
+.+.+.++..... ....|...+ .++.++..++|.- .+...-++|+|+.++..-| +.|+.
T Consensus 238 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~gRv~L~GDA-------AH~~~P~~GqG~n~gi~DA~~La~~La~ 308 (493)
T PRK08244 238 TSLIRICGTDFGL--NDPVWMSRFGNATRQAERYRSGRIFLAGDA-------AHIHFPAGGQGLNVGLQDAMNLGWKLAA 308 (493)
T ss_pred HHHHHhhCCCCCc--CCeeEEEecccceeeHhhhccCcEEEeecc-------eeccCCccccccccchhhHHHHHHHHHH
Confidence 6666666532211 011122211 2334445566543 4455566777777776666 55555
Q ss_pred HHhcCCCCcccccccccccccc
Q 015088 372 LVLSGEAQGVELQHFRISRFKE 393 (413)
Q Consensus 372 ~i~~g~~~~~~~~~~~~~R~~~ 393 (413)
.+ +|......++.|+-+|...
T Consensus 309 ~l-~g~~~~~lL~~Ye~eR~~~ 329 (493)
T PRK08244 309 AI-KGWAPDWLLDSYHAERHPV 329 (493)
T ss_pred HH-cCCCCchhhhhhHHHHHHH
Confidence 55 3544444577787777543
No 46
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.63 E-value=7.8e-14 Score=132.35 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=61.3
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~ 228 (413)
.++...+.+.|.+.+.+.|++++++++|++++. + ++.+.|.+.+|++++||.||.|+|.+| .+-+.+ +...+..
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~l-g~~~~~~ 181 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRR--S--GDDWLLTLADGRQLRAPLVVAADGANS-AVRRLA-GCATREW 181 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhc-CCCcccc
Confidence 455567778888888888999999999999987 6 456778888888899999999999998 344443 6554444
Q ss_pred EEEEEEEE
Q 015088 229 AVETTVCY 236 (413)
Q Consensus 229 ~~~g~~~~ 236 (413)
.+....+.
T Consensus 182 ~~~~~~~~ 189 (405)
T PRK05714 182 DYLHHAIV 189 (405)
T ss_pred cCCceEEE
Confidence 44444433
No 47
>PRK07190 hypothetical protein; Provisional
Probab=99.63 E-value=1.2e-13 Score=132.95 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
..+.+.|.+.+.+.|++++++++|+++.. + ++.+.+.+.+|++++|++||.|+|.+| .+-+.+ |+..+-
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~--~--~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~l-gi~f~g 177 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIEL--N--QAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHF-NVPFEI 177 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c--CCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHc-CCCccc
Confidence 45667788888888999999999999988 6 455666667777899999999999976 233333 665543
No 48
>PRK06184 hypothetical protein; Provisional
Probab=99.62 E-value=9.1e-14 Score=135.26 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088 151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGEKFWGKKCVVTAGAWVGKLVKRITGLELP 226 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~ 226 (413)
.-..+.+.|.+.+.+.|++++++++|++++. + ++.+.+.. .++++++||+||.|+|.+|. +-+.+ ++.+.
T Consensus 107 ~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~l-gi~~~ 179 (502)
T PRK06184 107 PQWRTERILRERLAELGHRVEFGCELVGFEQ--D--ADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKAL-GIGFP 179 (502)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEE--c--CCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhC-CCCcc
Confidence 3356777888888888999999999999987 6 34455544 45568999999999999984 44433 65443
No 49
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.62 E-value=1.3e-13 Score=130.55 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088 151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA 229 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~ 229 (413)
+-..+.+.|.+.+.+ .|++++++++|+++.. + ++.+.+++++|.++++|.||.|+|.++. +.+.+ +...+..+
T Consensus 110 ~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-~~~~~~~~ 183 (395)
T PRK05732 110 ELHDVGQRLFALLDKAPGVTLHCPARVANVER--T--QGSVRVTLDDGETLTGRLLVAADGSHSA-LREAL-GIDWQQHP 183 (395)
T ss_pred EhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCChh-hHHhh-CCCcccee
Confidence 334566777777766 4899999999999987 6 4667788888878999999999999984 55554 66655555
Q ss_pred EE
Q 015088 230 VE 231 (413)
Q Consensus 230 ~~ 231 (413)
..
T Consensus 184 ~~ 185 (395)
T PRK05732 184 YE 185 (395)
T ss_pred cC
Confidence 43
No 50
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.61 E-value=1e-13 Score=126.10 Aligned_cols=230 Identities=18% Similarity=0.169 Sum_probs=160.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC-cccCCCceeecccCCCChH-----------------
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG-SSHGESRTIRATYPEDYYH----------------- 65 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~-~s~~~~~~~~~~~~~~~~~----------------- 65 (413)
.++||++|||||.|.++++.|++. .++|.|+||.+..+..+ ..+.+++..+..+..-+|.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 479999999999999999999986 68999999988765332 2345666655543322221
Q ss_pred HHHHHHHHHHHHHHHHhCC----eeEEee--ceeeeCCCChhhHHHHHHHHhhCCC--Ccccc-CHHHHHHHcCCccc--
Q 015088 66 PMVLESCLLWEQAQSEIGY----KVYFKA--HQFDMGPSENKSLRSVIASCRKNSV--PHQVL-DCRQVLEKYSGRIE-- 134 (413)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~~~~~~-- 134 (413)
+-...+.++|..+.+.--+ .++... ..+.....+.+-+++.++.++..-+ ..++. +.+++.+..|..+.
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR 161 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR 161 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence 1223456677776554221 233333 3444555666667888887766422 23444 46677777775332
Q ss_pred -CCCCeEEEEecCCceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC-----CCcEEEcCEEEE
Q 015088 135 -IPENWVGVATELGGVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS-----NGEKFWGKKCVV 207 (413)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----~g~~i~ad~VV~ 207 (413)
.++...+.+...+.-+|-..+.+.|.+.+++. |++++++++|++|.+ .+ ++.|.|.+. +.++++|+.|++
T Consensus 162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r--~~-dg~W~v~~~~~~~~~~~~v~a~FVfv 238 (488)
T PF06039_consen 162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR--NG-DGRWEVKVKDLKTGEKREVRAKFVFV 238 (488)
T ss_pred CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE--CC-CCCEEEEEEecCCCCeEEEECCEEEE
Confidence 23444566777788899999999999999888 999999999999998 63 355877652 223799999999
Q ss_pred cCCCChHHhhhhhcCC----ccceeEEEEEEEEEEe
Q 015088 208 TAGAWVGKLVKRITGL----ELPIQAVETTVCYWRI 239 (413)
Q Consensus 208 A~G~~s~~l~~~~~g~----~~~~~~~~g~~~~~~~ 239 (413)
.+|+++-.|+.+. |+ .....|+.|+.+..+.
T Consensus 239 GAGG~aL~LLqks-gi~e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 239 GAGGGALPLLQKS-GIPEGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred CCchHhHHHHHHc-CChhhcccCCCcccceEEecCC
Confidence 9999999999887 65 4567889998776653
No 51
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.61 E-value=7.1e-14 Score=132.68 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=59.0
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
..++...+.+.|.+.+.+.|++++++++|++++. + ++.+.+.+.+|+++++|.||.|+|.++. +.+.+ ++..
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~-g~~~ 177 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFET--R--DEGVTVTLSDGSVLEARLLVAADGARSK-LRELA-GIKT 177 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHc-CCCc
Confidence 3567788999999999989999999999999987 6 4567788888888999999999999875 44444 6543
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.59 E-value=4.7e-13 Score=127.00 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=50.5
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL 223 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~ 223 (413)
.+.-..+.+.|.+.+++.|++++.+++|+++.. ++ +....+.+. +.+++|+.||+|+|..+ .+.+.+ +.
T Consensus 104 ~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~--~~-~~v~~v~~~-~~~i~A~~VI~AdG~~s-~v~~~l-g~ 172 (429)
T PRK10015 104 TVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR--EG-NKVTGVQAG-DDILEANVVILADGVNS-MLGRSL-GM 172 (429)
T ss_pred EeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE--eC-CEEEEEEeC-CeEEECCEEEEccCcch-hhhccc-CC
Confidence 445567888899999999999999999999987 62 233344443 44699999999999865 344444 54
No 53
>PRK08013 oxidoreductase; Provisional
Probab=99.59 E-value=3.3e-13 Score=127.67 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=60.2
Q ss_pred eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
.++-..+.+.|.+.+.+. |++++++++|++++. + ++.+.++..+|++++||.||.|.|.+|. +-+.+ ++..+-
T Consensus 107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~~-~~~~~~ 180 (400)
T PRK08013 107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--G--ENEAFLTLKDGSMLTARLVVGADGANSW-LRNKA-DIPLTF 180 (400)
T ss_pred EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeEEEEEcCCCEEEeeEEEEeCCCCcH-HHHHc-CCCccc
Confidence 345567888888888775 899999999999987 6 4567777778888999999999999873 33333 655443
Q ss_pred eEEEEEEEEEE
Q 015088 228 QAVETTVCYWR 238 (413)
Q Consensus 228 ~~~~g~~~~~~ 238 (413)
..+....+...
T Consensus 181 ~~~~~~~~~~~ 191 (400)
T PRK08013 181 WDYQHHALVAT 191 (400)
T ss_pred cccCcEEEEEE
Confidence 33333333333
No 54
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.58 E-value=1.9e-13 Score=129.36 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred eeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 149 VIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.++...+.+.|.+.+.+.+ ++++++++|+++.. + ++.+.+.+.+|+++++|.||.|+|.+|.
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--D--GDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--C--CCceEEEEcCCCEEecCEEEECCCcChH
Confidence 3566778888888887764 99999999999987 6 4567788888888999999999999985
No 55
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.58 E-value=5.6e-13 Score=131.11 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEE--EEcCCCc-EEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVT--VVTSNGE-KFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~--v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
..+.+.|.+.+.+. +++++++++|++++. + ++.+. +++.++. ++++|+||.|+|.+|. +-+.+ ++...-
T Consensus 125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~l-g~~~~g 197 (547)
T PRK08132 125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQ--H--DDGVTLTVETPDGPYTLEADWVIACDGARSP-LREML-GLEFEG 197 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--c--CCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHc-CCCCCC
Confidence 45667777777775 799999999999987 6 34444 3444554 6999999999999884 33333 654443
No 56
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.57 E-value=2.5e-13 Score=128.33 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=55.2
Q ss_pred eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088 149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE 224 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~ 224 (413)
.++...+.+.|.+.+.+. |++++++++|+++.. + ++.+.|.+.+|++++||.||.|+|.+|. +.+.+ ++.
T Consensus 108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~-~~~ 178 (391)
T PRK08020 108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQR--D--DDGWELTLADGEEIQAKLVIGADGANSQ-VRQMA-GIG 178 (391)
T ss_pred EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--c--CCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHc-CCC
Confidence 355567888888888776 999999999999987 6 4567788878878999999999999984 44433 544
No 57
>PRK09126 hypothetical protein; Provisional
Probab=99.56 E-value=6e-13 Score=125.83 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
....+.+.|.+.+.+ .|++++++++|++++. + ++.+.|.+++|++++||.||.|+|.++. +.+.+ ++..
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~ 177 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--D--DDGAQVTLANGRRLTARLLVAADSRFSA-TRRQL-GIGA 177 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--c--CCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhc-CCCc
Confidence 334566666666644 5999999999999987 6 4567788788888999999999999773 33333 5433
No 58
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.56 E-value=5.1e-13 Score=127.32 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC--CC-cEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088 153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG-EKFWGKKCVVTAGAWVGKLVKRITGLE 224 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~VV~A~G~~s~~l~~~~~g~~ 224 (413)
..+.+.|.+.+.+. |++++++++|++++. + ++.+.|+.. ++ .+++||.||.|+|.+|. +-+.+ +..
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~adlvIgADG~~S~-vR~~~-~~~ 190 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEY--Q--QDAATVTLEIEGKQQTLQSKLVVAADGARSP-IRQAA-GIK 190 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeeEEEEccCCcceEEeeeEEEEeCCCCch-hHHHh-CCC
Confidence 45777787777765 799999999999987 6 345555544 23 36999999999999883 33333 543
No 59
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.56 E-value=1.2e-12 Score=128.45 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC--CC--cEEEcCEEEEcCCCChH
Q 015088 151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG--EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~VV~A~G~~s~ 214 (413)
.-..+.+.|.+.+.+. |++++++++|++++. + ++++.++.. +| ++++||+||.|+|.+|.
T Consensus 111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ--D--DDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--c--CCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 3345667787877775 899999999999988 6 345665543 56 37999999999999874
No 60
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.56 E-value=7.4e-14 Score=130.02 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=83.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce-eecccCC-CCh-------HHHHHHHHHHHHHH
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPE-DYY-------HPMVLESCLLWEQA 78 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~-~~~~~~~-~~~-------~~l~~~~~~~~~~~ 78 (413)
|||+|||||++|+.||+.|++.|.+|+|+|++...|-.-...+++++ +.+.... ..+ ..+....+. +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~---~- 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALK---R- 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHH---H-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHh---c-
Confidence 79999999999999999999999999999999877422111111111 1110000 000 000000000 0
Q ss_pred HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088 79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSM 158 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
....+..+++.+.|++...-.. .+.+|. .-....++..
T Consensus 77 ----------------------f~~~d~~~ff~~~Gv~~~~~~~---gr~fP~-----------------s~~a~~Vv~~ 114 (409)
T PF03486_consen 77 ----------------------FSPEDLIAFFEELGVPTKIEED---GRVFPK-----------------SDKASSVVDA 114 (409)
T ss_dssp ----------------------S-HHHHHHHHHHTT--EEE-ST---TEEEET-----------------T--HHHHHHH
T ss_pred ----------------------CCHHHHHHHHHhcCCeEEEcCC---CEECCC-----------------CCcHHHHHHH
Confidence 0113455566666665322110 011111 1134788899
Q ss_pred HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
|.+.+++.|++++++++|.+|.. ++ ++.+.|+++++.++.||.||+|+|+.+
T Consensus 115 L~~~l~~~gv~i~~~~~V~~i~~--~~-~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 115 LLEELKRLGVEIHFNTRVKSIEK--KE-DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHT-EEE-S--EEEEEE--ET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHcCCEEEeCCEeeeeee--cC-CceeEeeccCcccccCCEEEEecCCCC
Confidence 99999999999999999999988 62 355889986666799999999999755
No 61
>PRK06126 hypothetical protein; Provisional
Probab=99.55 E-value=9.4e-13 Score=129.59 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=49.7
Q ss_pred eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhhhcCC
Q 015088 150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKRITGL 223 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~ 223 (413)
+.-..+.+.|.+.+++. |++++++++|+++.. + ++.+.+.. .+|+ ++++|+||.|+|.+|. +-+.+ ++
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~l-gi 196 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ--D--ADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSL-GI 196 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE--C--CCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhc-CC
Confidence 34456777888887764 899999999999987 6 33444433 3453 6899999999999884 44444 55
Q ss_pred cc
Q 015088 224 EL 225 (413)
Q Consensus 224 ~~ 225 (413)
..
T Consensus 197 ~~ 198 (545)
T PRK06126 197 SY 198 (545)
T ss_pred cc
Confidence 43
No 62
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.55 E-value=4.2e-13 Score=126.21 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=115.3
Q ss_pred ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcC-CCcEEEcCEEEEcCCCChHHhhhhhcC-Cc
Q 015088 148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGEKFWGKKCVVTAGAWVGKLVKRITG-LE 224 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~~l~~~~~g-~~ 224 (413)
..+.-..+.+.|.+.+.+.+ ++++++++|+.++. + ++.+.++.+ +|++++||.||-|.|.+|. .++..+ ..
T Consensus 99 ~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~--~~~v~v~l~~dG~~~~a~llVgADG~~S~--vR~~~~~~~ 172 (387)
T COG0654 99 YVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--D--GDGVTVTLSFDGETLDADLLVGADGANSA--VRRAAGIAE 172 (387)
T ss_pred EEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--c--CCceEEEEcCCCcEEecCEEEECCCCchH--HHHhcCCCC
Confidence 34455788899999998876 99999999999998 6 345556666 8989999999999999873 333335 22
Q ss_pred cceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHH
Q 015088 225 LPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKE 304 (413)
Q Consensus 225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (413)
..-..+....+.......... .............+.+.|..+....+.+.... ........+ ..+....
T Consensus 173 ~~~~~y~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~ 241 (387)
T COG0654 173 FSGRDYGQTALVANVEPEEPH-----EGRAGERFTHAGPFALLPLPDNRSSVVWSLPP--GPAEDLQGL----SDEEFLR 241 (387)
T ss_pred ccCCCCCceEEEEEeecCCCC-----CCeEEEEecCCCceEEEecCCCceeEEEECCh--hhHHHHhcC----CHHHHHH
Confidence 222223333333333232110 01111111122235555655322222222110 000011111 3344566
Q ss_pred HHHhhcCCC--CCCCCCeeeceeee--------eecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088 305 WIQGRFAGR--VDSNGPVATQLCMY--------SITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374 (413)
Q Consensus 305 ~~~~~~p~~--~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 374 (413)
.+.+.+|.. ... .....+.-.+ .+..++.-++|.-. +...-.+|+|+.++.--+..||+.+.
T Consensus 242 ~l~~~~~~~~~~~~-~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAA-------H~~~P~~gQG~nlgl~Da~~La~~L~ 313 (387)
T COG0654 242 ELQRRLGERDPLGR-VTLVSSRSAFPLSLRVAERYRRGRVVLIGDAA-------HAMHPLAGQGANLALEDAAALAEALA 313 (387)
T ss_pred HHHHhcCcccccce-EEEccccccccccchhhhheecCcEEEEeecc-------ccCCCccccchhhhhhhHHHHHHHHH
Confidence 677777755 211 0000111111 23345566666543 44455567777777777777776665
Q ss_pred cCCCC---cccccccccccccc
Q 015088 375 SGEAQ---GVELQHFRISRFKE 393 (413)
Q Consensus 375 ~g~~~---~~~~~~~~~~R~~~ 393 (413)
..... ...++.|.-.|...
T Consensus 314 ~~~~~~~~~~~L~~Y~~~R~~~ 335 (387)
T COG0654 314 AAPRPGADAAALAAYEARRRPR 335 (387)
T ss_pred HHhhcCccHHHHHHHHHhhhhH
Confidence 43221 33466676666443
No 63
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.55 E-value=4.6e-13 Score=125.98 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEE
Q 015088 153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVE 231 (413)
Q Consensus 153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~ 231 (413)
..+...|.+.+.+. |++++++++|++++. + ++.+.+++.+|+++++|.||.|+|.+|. +-+.+ ++......+.
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~-gi~~~~~~~~ 183 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEF--S--AEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLA-GIGITAWDYR 183 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCCch-hHHhc-CCCceeccCC
Confidence 45666777776654 799999999999988 6 4567788888888999999999999883 33333 5443333333
Q ss_pred EEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcC
Q 015088 232 TTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFA 311 (413)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p 311 (413)
...+.+.+...... ....+..+ ...+... ..|.....+.+.+.... ... ...... ..+.+.+.+.+.+|
T Consensus 184 ~~~~v~~~~~~~~~---~~~~~~~~-~~~g~~~-~~pl~~~~~~~~~~~~~-~~~-~~~~~~----~~~~~~~~l~~~~~ 252 (384)
T PRK08849 184 QHCMLINVETEQPQ---QDITWQQF-TPSGPRS-FLPLCGNQGSLVWYDSP-KRI-KQLSAM----NPEQLRSEILRHFP 252 (384)
T ss_pred CeEEEEEEEcCCCC---CCEEEEEe-CCCCCEE-EeEcCCCceEEEEECCH-HHH-HHHHcC----CHHHHHHHHHHHhh
Confidence 44433333221110 00000011 1111211 13433222222221100 000 000001 12334444555555
Q ss_pred CCCCCCCCeeeceeeee--------ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc-CCCCccc
Q 015088 312 GRVDSNGPVATQLCMYS--------ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS-GEAQGVE 382 (413)
Q Consensus 312 ~~~~~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~-g~~~~~~ 382 (413)
.... .+...+...++ ++.++.-++|. -.+...-+.|+|+.++.--|..|++.+.. +......
T Consensus 253 ~~~~--~~~~~~~~~~~l~~~~~~~~~~grv~LlGD-------AAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~ 323 (384)
T PRK08849 253 AELG--EIKVLQHGSFPLTRRHAQQYVKNNCVLLGD-------AAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDAS 323 (384)
T ss_pred hhhC--cEEeccceEeeccccccchhccCCEEEEEc-------ccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHH
Confidence 3221 11112223322 22233334443 34455667899999999999999998863 3222334
Q ss_pred cccccccccccC
Q 015088 383 LQHFRISRFKEN 394 (413)
Q Consensus 383 ~~~~~~~R~~~~ 394 (413)
++.|.-.|....
T Consensus 324 L~~Ye~~R~~~~ 335 (384)
T PRK08849 324 FARYERRRRPDN 335 (384)
T ss_pred HHHHHHHHhHHH
Confidence 777777775543
No 64
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.54 E-value=3.2e-12 Score=120.68 Aligned_cols=198 Identities=10% Similarity=-0.007 Sum_probs=108.1
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~ 228 (413)
.++...+.+.|.+.+.+.|++++ .++|+++.. ++ ++.+.|.+.+|++++|+.||.|+|.++ .+.....+....+.
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~--~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~~~~~~~~~~~~q 155 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEA--DG-VALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRFPLNVGFQ 155 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEe--cC-CceeEEEeCCCCEEEeCEEEECCCCch-hcccccCCCCceEE
Confidence 47778899999999988899997 668888876 52 356778888887799999999999987 22111113334455
Q ss_pred EEEEEEEEEEecCCCCCccccCCCCCeEEE---c--------CCC--ceEecCCCCCCCcEEEecCCCCCCCCCCCCCCC
Q 015088 229 AVETTVCYWRIKEGNEADYAVGGDFPSFAS---Y--------GDP--YIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGP 295 (413)
Q Consensus 229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~--~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (413)
...|..+.+..++.... .+.+.. . ... ++|+.|..+ +...+.... ....+ ....
T Consensus 156 ~~~G~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~--~~~~v~~~~-~~~~~---~~~~ 222 (388)
T TIGR01790 156 VAYGVEARLSRPPHGPS-------SMVIMDARVDQLAAPELKGYRPTFLYAMPLGS--TRVFIEETS-LADRP---ALPR 222 (388)
T ss_pred EEEEEEEEEcCCCCCCC-------ceEEEeccccccccccccCCCCceEEEeecCC--CeEEEEecc-ccCCC---CCCH
Confidence 55666544432221110 111111 0 112 578888754 333333211 11111 1111
Q ss_pred chhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCC------CCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHH
Q 015088 296 GLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPD------EDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRIL 369 (413)
Q Consensus 296 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d------~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~l 369 (413)
+...+.|.+++... + +.. .++.....|+.|+... +..+||. .-..+.-.+|.|+.++...|..+
T Consensus 223 ~~~~~~l~~~~~~~-g-~~~-~~i~~~~~~~iP~~~~~~~~~~rv~liGd-------AAg~~~P~tG~Gi~~al~~a~~l 292 (388)
T TIGR01790 223 DRLRQRILARLNAQ-G-WQI-KTIEEEEWGALPVGLPGPFLPQRVAAFGA-------AAGMVHPTTGYSVARALSDAPGL 292 (388)
T ss_pred HHHHHHHHHHHHHc-C-Cee-eEEEeeeeEEEecccCCCccCCCeeeeec-------hhcCcCCcccccHHHHHHHHHHH
Confidence 11344444444443 2 221 1234444566665322 1112222 22233336788999999999999
Q ss_pred HHHHh
Q 015088 370 ADLVL 374 (413)
Q Consensus 370 a~~i~ 374 (413)
|+.+.
T Consensus 293 a~~l~ 297 (388)
T TIGR01790 293 AAAIA 297 (388)
T ss_pred HHHHH
Confidence 98884
No 65
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.54 E-value=4.4e-13 Score=125.15 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=111.3
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
..++...+.+.+.+.+.+.| .++.+++|++|+. . +..+.+.+.+|++++|+.||.|.|..+. . +.....
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~--~--~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~-----~~~~~~ 150 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEE--T--GDGVLVVLADGRTIRARVVVDARGPSSP-K-----ARPLGL 150 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEe--c--CceEEEEECCCCEEEeeEEEECCCcccc-c-----cccccc
Confidence 46788889999999988444 5666899999988 6 4577888899988999999999996543 1 222334
Q ss_pred eEEEEEEEEEEecCCCCCccccCCCCCeEE---E----cCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHH
Q 015088 228 QAVETTVCYWRIKEGNEADYAVGGDFPSFA---S----YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300 (413)
Q Consensus 228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (413)
+...|..+.++.+. +.+ ..+.+. . .+..++|+.|.....-++.-+.... .+. ...+...+
T Consensus 151 Q~f~G~~v~~~~~~-----f~~--~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~---~~~---~~~~~~~~ 217 (374)
T PF05834_consen 151 QHFYGWEVETDEPV-----FDP--DTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP---RPA---LPEEELKA 217 (374)
T ss_pred ceeEEEEEeccCCC-----CCC--CceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC---CCC---CCHHHHHH
Confidence 55566655444221 111 122221 1 1234689988765332222222221 121 11122456
Q ss_pred HHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCC-eEecCCCCCCCCCEEEEeC-------CCCCCCccchHHHHHHHHH
Q 015088 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDED-FVIDFLGGEFGEDVVVAGG-------FSGHGFKMAPAVGRILADL 372 (413)
Q Consensus 301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~-p~ig~~~~~~~~~~~~~~G-------~~~~G~~~a~~~a~~la~~ 372 (413)
.|.+++.+ -.+.. .++++.-.|+.|++..+. +... .++...+. .+|.++..+--.|..+|+.
T Consensus 218 ~l~~~l~~--~g~~~-~~i~~~E~G~IPm~~~~~~~~~~-------~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~ 287 (374)
T PF05834_consen 218 RLRRYLER--LGIDD-YEILEEERGVIPMTTGGFPPRFG-------QRVIRIGTAGGMVKPSTGYSFARIQRQADAIADA 287 (374)
T ss_pred HHHHHHHH--cCCCc-eeEEEeecceeecccCCCccccC-------CCeeeEEccccCCCCcccHHHHHHHHHHHHHHHH
Confidence 66666666 23333 257778889999954332 2221 22222111 1244566666677888888
Q ss_pred Hhc
Q 015088 373 VLS 375 (413)
Q Consensus 373 i~~ 375 (413)
+..
T Consensus 288 l~~ 290 (374)
T PF05834_consen 288 LAK 290 (374)
T ss_pred Hhh
Confidence 775
No 66
>PRK07045 putative monooxygenase; Reviewed
Probab=99.54 E-value=1.7e-12 Score=122.45 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.-..+.+.|.+.+.+ .|++++++++|++++. ++++..+.|++.+|+++++|.||.|.|.+|
T Consensus 104 ~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 104 PCEQLRRLLLAKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred cHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 345677778777754 5899999999999987 633334578888888899999999999987
No 67
>PLN02463 lycopene beta cyclase
Probab=99.52 E-value=2.1e-12 Score=122.21 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=52.3
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
+.++...+.+.|.+.+.+.|++++ .++|++|+. . ++.+.|++++|++++|+.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~--~--~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVH--E--ESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 456778888999999988999997 679999988 6 4567888888878999999999998763
No 68
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.51 E-value=7.4e-12 Score=124.11 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=110.5
Q ss_pred eChHHHHHHHHHHHHHCC--CEEEcCceEEEEEEecccC-CCeEEEEcC------CC--cEEEcCEEEEcCCCChHHhhh
Q 015088 150 IKPTKAVSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAV-KGGVTVVTS------NG--EKFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~-~~~~~v~~~------~g--~~i~ad~VV~A~G~~s~~l~~ 218 (413)
++-..+.+.|.+.+.+.| +++++++++++++. ++. +..+.++.. +| ++++||+||-|.|+.|. + +
T Consensus 138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-V-R 213 (634)
T PRK08294 138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--DEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-V-R 213 (634)
T ss_pred eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE--CCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-H-H
Confidence 444567788888887776 47888999999987 532 234555442 35 47999999999999873 3 3
Q ss_pred hhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCe-EEEcCCCceEecCCCCCCC-cEEEecCCCCCCCCCCCCCCCc
Q 015088 219 RITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPS-FASYGDPYIYGTPSLEYPG-LIKIALHGGYPCDPDRRPWGPG 296 (413)
Q Consensus 219 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 296 (413)
+..|+.+.-...........+... ..+.. ..... +.......+.+.|... + .+.+.... ...+++...+...
T Consensus 214 ~~lgi~~~G~~~~~~~~v~dv~~~--~~~p~-~~~~~~~~~~~~g~~~~~P~~~--g~~~r~~~~~-~~~~~~~~~~~~~ 287 (634)
T PRK08294 214 KAIGRELRGDSANHAWGVMDVLAV--TDFPD-IRLKCAIQSASEGSILLIPREG--GYLVRLYVDL-GEVPPDERVAVRN 287 (634)
T ss_pred HhcCCCccCCcccceEEEEEEEEc--cCCCC-cceEEEEecCCCceEEEEECCC--CeEEEEEEec-CcCCCcccccccc
Confidence 333654443322222222221110 01110 01111 1122233456666643 3 23322211 0111111111111
Q ss_pred hhHHHHHHHHHhhcCC-CCCCCCCeeeceeeee--------ec----------CCCCeEecCCCCCCCCCEEEEeCCCCC
Q 015088 297 LLLDSLKEWIQGRFAG-RVDSNGPVATQLCMYS--------IT----------PDEDFVIDFLGGEFGEDVVVAGGFSGH 357 (413)
Q Consensus 297 ~~~~~l~~~~~~~~p~-~~~~~~~~~~~~g~~~--------~t----------~d~~p~ig~~~~~~~~~~~~~~G~~~~ 357 (413)
...+.+.+.+.+.++. ..+. ..+ .|...+. +. .++..++|.. .+..+-++|+
T Consensus 288 ~t~e~l~~~~~~~~~p~~~~~-~~v-~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDA-------AH~hsP~~GQ 358 (634)
T PRK08294 288 TTVEEVIAKAQRILHPYTLDV-KEV-AWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDA-------CHTHSAKAGQ 358 (634)
T ss_pred CCHHHHHHHHHHhcCCCCCce-eEE-eEEecccccceehhhcccccccccccccCCEEEEecC-------ccCCCCcccc
Confidence 1466777888887653 2221 122 2333322 11 1233344433 2333445666
Q ss_pred CCccch----HHHHHHHHHHhcCCCCcccccccccccccc
Q 015088 358 GFKMAP----AVGRILADLVLSGEAQGVELQHFRISRFKE 393 (413)
Q Consensus 358 G~~~a~----~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 393 (413)
|+.++. -+|+.|+..+. |...+..++.|.-+|...
T Consensus 359 GmN~giqDA~nLawkLa~vl~-g~a~~~lL~tYe~ERrp~ 397 (634)
T PRK08294 359 GMNVSMQDGFNLGWKLAAVLS-GRSPPELLHTYSAERQAI 397 (634)
T ss_pred chhhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHH
Confidence 666655 45556776664 554455677787777543
No 69
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.50 E-value=2.4e-11 Score=118.52 Aligned_cols=67 Identities=27% Similarity=0.270 Sum_probs=53.9
Q ss_pred EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
+.+.+.+|. ..+.+.|.+.+++.|++|+++++|++|.. ++ +..+.|++.+|++++||.||+|++...
T Consensus 210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIET--EG-GRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEe--eC-CEEEEEEECCCCEEECCEEEECCcHHH
Confidence 344444443 67889999999999999999999999987 62 355788888888899999999999743
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.50 E-value=1.1e-12 Score=115.26 Aligned_cols=145 Identities=21% Similarity=0.168 Sum_probs=92.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
.++||+|||||++|+++|++|++.|++|+|+|+....++..+.. +.+. . ...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g---g~~~---~-----~~~----------------- 75 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG---GMLF---N-----KIV----------------- 75 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC---cccc---c-----ccc-----------------
Confidence 36899999999999999999999999999999987764321110 1000 0 000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
+ . ......+...++++... ......+++..+...|.+.+++
T Consensus 76 ---------v----~---~~~~~~l~~~gv~~~~~-----------------------~~g~~~vd~~~l~~~L~~~A~~ 116 (257)
T PRK04176 76 ---------V----Q---EEADEILDEFGIRYKEV-----------------------EDGLYVADSVEAAAKLAAAAID 116 (257)
T ss_pred ---------c----h---HHHHHHHHHCCCCceee-----------------------cCcceeccHHHHHHHHHHHHHH
Confidence 0 0 01122233344332110 0011245778899999999999
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEcC-----------CCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-----------NGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----------~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
.|++++++++|.++.. ++++....+.+. +..+++|+.||+|+|.++. +.+.+
T Consensus 117 ~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~l 179 (257)
T PRK04176 117 AGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSVL 179 (257)
T ss_pred cCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHHH
Confidence 9999999999999986 533233333221 1236999999999999884 44333
No 71
>PRK06996 hypothetical protein; Provisional
Probab=99.50 E-value=1.5e-12 Score=123.02 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=59.6
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
.++-..+.+.|.+.+.+.|+++++++++++++. + ...+.+...++ ++++||.||.|+|..+..+.+.+ +...
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~--~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~-~~~~ 185 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--D--ADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA-GDSA 185 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--c--CCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc-CCCc
Confidence 455578889999999999999999999999977 5 46677776644 47999999999997433333443 5444
Q ss_pred ceeEEEEEEEEEEe
Q 015088 226 PIQAVETTVCYWRI 239 (413)
Q Consensus 226 ~~~~~~g~~~~~~~ 239 (413)
+...+....++..+
T Consensus 186 ~~~~~~~~~~~~~v 199 (398)
T PRK06996 186 RRRDYGQTAIVGTV 199 (398)
T ss_pred eeeecCCeEEEEEE
Confidence 43333333333333
No 72
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.49 E-value=4.1e-13 Score=125.27 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=50.4
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGKKCVVTAGAWVGKLVKRITGLEL 225 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~VV~A~G~~s~~l~~~~~g~~~ 225 (413)
.++-..+.+.|.+.+++.|++++++++|+++.. ++++..+.+... +|+ +++||.||.|.|.+|. +.+.+ +...
T Consensus 107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l-~~~~ 182 (356)
T PF01494_consen 107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQL-GIDR 182 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHT-TGGE
T ss_pred hhhHHHHHHhhhhhhhhhhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeecccCcccc-hhhhc-cccc
Confidence 345567889999999999999999999999987 632222233332 343 6899999999999883 44444 5443
No 73
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.49 E-value=6.3e-12 Score=119.24 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088 151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA 229 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~ 229 (413)
.-..+.+.|.+.+.+. |++++++++|++++. + ++.+.|.+.+|++++||.||.|.|.+|. +-+.+ ++..+...
T Consensus 109 ~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~-~~~~~~~~ 182 (405)
T PRK08850 109 ENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--G--ESEAWLTLDNGQALTAKLVVGADGANSW-LRRQM-DIPLTHWD 182 (405)
T ss_pred EHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--e--CCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHc-CCCeeEEe
Confidence 3345667777777664 799999999999987 6 4567788888888999999999999873 33333 55544433
Q ss_pred E
Q 015088 230 V 230 (413)
Q Consensus 230 ~ 230 (413)
+
T Consensus 183 ~ 183 (405)
T PRK08850 183 Y 183 (405)
T ss_pred e
Confidence 3
No 74
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.49 E-value=3.2e-13 Score=130.97 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=102.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHH---HHHHHHHHHHHHHHHh
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP---MVLESCLLWEQAQSEI 82 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~ 82 (413)
.++||||||+|++|++||+.+++.|.+|+||||....++... ...+.+..... .... .......+++++.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~--~s~Gg~~~~~~--~~~~~~g~~d~~~~~~~~~~~~~ 135 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM--KASSGMNASET--KFQKAQGIADSNDKFYEETLKGG 135 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc--ccCCccccCCh--HHHHhcCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999999999999999987754321 11122111000 0000 0000112222222110
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
... .....+... .+......+++.+.|+++.... ..+. ......+.+..+......+...|.+.
T Consensus 136 ~~~--~d~~l~~~~---~~~s~~~i~wl~~~Gv~~~~~~------~~~g-----~~~~r~~~p~~g~~~g~~l~~~L~~~ 199 (506)
T PRK06481 136 GGT--NDKALLRYF---VDNSASAIDWLDSMGIKLDNLT------ITGG-----MSEKRTHRPHDGSAVGGYLVDGLLKN 199 (506)
T ss_pred CCC--CCHHHHHHH---HhccHHHHHHHHHcCceEeecc------cCCC-----CCCCceeccCCCCCChHHHHHHHHHH
Confidence 000 000000000 0011234556666666543211 0011 00111122333334456788889999
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+++.|++++++++|++|.. ++ +.. +.+...+++ ++.++.||+|+|++..
T Consensus 200 ~~~~gv~i~~~t~v~~l~~--~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 200 VQERKIPLFVNADVTKITE--KD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHcCCeEEeCCeeEEEEe--cC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 9999999999999999987 63 233 444444443 6899999999998764
No 75
>PRK07588 hypothetical protein; Provisional
Probab=99.48 E-value=1.3e-11 Score=116.71 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
-..+.+.|.+.+. .|++++++++|++++. + ++.+.|.+++|+++++|.||.|.|.+|.
T Consensus 102 r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 102 RGDLAAAIYTAID-GQVETIFDDSIATIDE--H--RDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHHHhhh-cCeEEEeCCEEeEEEE--C--CCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 3556666666543 4799999999999988 6 4678888889988999999999999873
No 76
>PRK05868 hypothetical protein; Validated
Probab=99.47 E-value=5.9e-11 Score=110.94 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.|.+. ...|++++++++|++++. + ++.+.|...+|+++++|.||.|.|.+|.
T Consensus 105 ~~L~~~l~~~-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 105 DDLVELLYGA-TQPSVEYLFDDSISTLQD--D--GDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHHHh-ccCCcEEEeCCEEEEEEe--c--CCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 4455555432 346899999999999987 6 4678888888888999999999999883
No 77
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.47 E-value=8.3e-12 Score=117.62 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=50.3
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC------CC--cEEEcCEEEEcCCCChHHhhhhh
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS------NG--EKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g--~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
.++...+.+.|.+.+.+.|++++. +.|+++.. + ++.+.+... +| .+++|+.||.|+|.+|. +.+.+
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~l 161 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLER--D--RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKEL 161 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEE--c--CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHc
Confidence 467778889999999999999975 56999877 6 345555443 22 36999999999999873 44444
Q ss_pred cCCc
Q 015088 221 TGLE 224 (413)
Q Consensus 221 ~g~~ 224 (413)
+..
T Consensus 162 -g~~ 164 (388)
T TIGR02023 162 -GLP 164 (388)
T ss_pred -CCC
Confidence 543
No 78
>PRK11445 putative oxidoreductase; Provisional
Probab=99.47 E-value=2.5e-11 Score=112.64 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=46.7
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcCEEEEcCCCChH
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.++...+.+.|.+. ...|+++++++.|+++.. . ++++.+.. .+|+ +++||.||.|+|..|.
T Consensus 95 ~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 95 NIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWR--E--DDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEE--c--CCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 45667777777764 467899999999999987 6 35566664 4564 6899999999999873
No 79
>PRK06753 hypothetical protein; Provisional
Probab=99.47 E-value=4.9e-12 Score=118.81 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=46.5
Q ss_pred eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
++-..+.+.|.+.+. +.+++++++|++++. + ++.+.+++++|+++++|.||.|.|.+|.
T Consensus 95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIEN--E--TDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred ccHHHHHHHHHHhCC--CceEEECCEEEEEEe--c--CCcEEEEECCCCEEecCEEEECCCcchH
Confidence 444566666666543 468999999999987 6 4678888888888999999999999873
No 80
>PRK07538 hypothetical protein; Provisional
Probab=99.46 E-value=2.2e-11 Score=115.84 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=44.8
Q ss_pred eeChHHHHHHHHHHHHH-CC-CEEEcCceEEEEEEecccCCCeEEEEcCC---C--cEEEcCEEEEcCCCChH
Q 015088 149 VIKPTKAVSMFQTLAIK-NG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSN---G--EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~VV~A~G~~s~ 214 (413)
.++-..+.+.|.+.+.+ .| .+++++++|+++.. ++ +.+.+...+ | ++++||.||.|.|.+|.
T Consensus 98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--~~--~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--DA--DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cC--CceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 35667788888888765 46 46999999999987 52 323333322 2 37999999999999884
No 81
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.46 E-value=1.1e-12 Score=126.72 Aligned_cols=183 Identities=17% Similarity=0.132 Sum_probs=99.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC--CCCCCcccCCCceeecccCCCChHHHH-HHHHHHHHHHHHHh
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF--LHHRGSSHGESRTIRATYPEDYYHPMV-LESCLLWEQAQSEI 82 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~--~gg~~~s~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 82 (413)
.++||||||+|++|+++|+.|+++|.+|+||||... .|+ ++....+ +............. .....++..+.+..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG--~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG--NSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVT 79 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc--ccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhh
Confidence 468999999999999999999999999999999874 332 2222222 21111110000000 01123344443332
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
+.......... + ........+++.+.|+++....... ...... ..+... ....++..|.+.
T Consensus 80 ~~~~~~~~~~~-~----~~~s~~~~~wl~~~Gv~~~~~~~~~--------~~~~~~--~~~~~g----~g~~l~~~l~~~ 140 (466)
T PRK08274 80 GGRTDEALARL-L----IRESSDCRDWMRKHGVRFQPPLSGA--------LHVART--NAFFWG----GGKALVNALYRS 140 (466)
T ss_pred CCCCCHHHHHH-H----HHcCHHHHHHHHhCCceEeecCCCc--------cccCCC--CeeecC----CHHHHHHHHHHH
Confidence 21000000000 0 0011234555666676543221100 000000 001111 146788889999
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCeEEEEc--CCCc--EEEcCEEEEcCCCCh
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~--~i~ad~VV~A~G~~s 213 (413)
+++.|++++++++|++|.. ++ +..+.|.+ .+++ .++++.||+|+|++.
T Consensus 141 ~~~~gv~i~~~t~v~~l~~--~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 141 AERLGVEIRYDAPVTALEL--DD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHCCCEEEcCCEEEEEEe--cC-CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 9999999999999999987 63 34444443 3332 689999999999865
No 82
>PRK07233 hypothetical protein; Provisional
Probab=99.45 E-value=1.4e-10 Score=111.33 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW 212 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~ 212 (413)
..+.+.|.+.+++.|++|+++++|++|+. + ++.+.+.+.+++++++|.||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~--~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVI--D--GGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEE--c--CCceEEEEeCCceEECCEEEECCCHH
Confidence 67889999999999999999999999988 6 34444444556679999999999863
No 83
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=1.4e-12 Score=125.54 Aligned_cols=65 Identities=32% Similarity=0.419 Sum_probs=54.4
Q ss_pred EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088 141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA 211 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~ 211 (413)
+++.+.+|+ ..+.++|.+.+++.|++|+++++|++|.. +++ .++.+.+.+|+.+++|.||.+...
T Consensus 215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v--~~g-~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILV--EGG-KGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEE--eCC-cceEEeccccceeccceeEecCch
Confidence 344555554 78999999999999999999999999998 733 578888888866899999999987
No 84
>PRK07121 hypothetical protein; Validated
Probab=99.44 E-value=1.2e-12 Score=126.91 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=100.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHH--HHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP--MVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~ 83 (413)
..+||||||+|.+|++||++++++|.+|+||||....++. +....+.+........... ........++.+.+..+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~--s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~ 96 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA--TALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVG 96 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc--ccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999876543 2222233221100000000 00001112222222111
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCc---ccC-------------CCCeEEEEecCC
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGR---IEI-------------PENWVGVATELG 147 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~ 147 (413)
... ....+ ..-.+...+.++++.++|+++......+. ..+|.. ... ............
T Consensus 97 ~~~--d~~l~---~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~-~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 170 (492)
T PRK07121 97 PGV--DEEKL---RRYCEGSVEHFDWLEGLGVPFERSFFPEK-TSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGP 170 (492)
T ss_pred CCC--CHHHH---HHHHHccHHHHHHHHHcCcEEEeccCCCc-ccCCCCCcccccchhhcchhhhhccCCcccceecCCC
Confidence 000 00000 00000112344555666665432100000 000000 000 000000111111
Q ss_pred cee-ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEc-CEEEEcCCCChH
Q 015088 148 GVI-KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~a-d~VV~A~G~~s~ 214 (413)
+.. ....+.+.|.+.+++.|++|+++++|++|.. ++++..+.|... +++ .+.| +.||+|+|+++.
T Consensus 171 ~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 171 GDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred CCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 111 3567888999999999999999999999987 633344444432 232 5889 999999998763
No 85
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.43 E-value=9.4e-11 Score=111.60 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=48.8
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCC-------C--cEEEcCEEEEcCCCChHHhhh
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSN-------G--EKFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~-------g--~~i~ad~VV~A~G~~s~~l~~ 218 (413)
.++-..+-+.|.+.+.+.|++++.. .++++.. .+ +++.+.|+..+ | .+++||.||.|+|..| .+.+
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr 203 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDV--PKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAK 203 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEe--ccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHH
Confidence 4677888899999999999999864 6778764 32 12344444321 3 3799999999999987 4444
Q ss_pred hhcCC
Q 015088 219 RITGL 223 (413)
Q Consensus 219 ~~~g~ 223 (413)
.+ +.
T Consensus 204 ~l-g~ 207 (450)
T PLN00093 204 DI-DA 207 (450)
T ss_pred Hh-CC
Confidence 44 44
No 86
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.42 E-value=3.9e-11 Score=112.47 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=50.7
Q ss_pred ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.-..+.+.|.+.+.+.+ ++++++++|+++.. + ++.+.+.+.++ +++||.||.|.|.+|.
T Consensus 99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--H--NDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--c--CCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34555788889998888874 89999999999987 6 45677777776 6999999999999884
No 87
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.41 E-value=1.4e-11 Score=107.81 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=88.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
..+||+|||||++|+++|+.|+++|++|+||||+...|+..+ .. +...+. +
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~g-g~~~~~--------~------------------ 70 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GG-GMLFSK--------I------------------ 70 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CC-Ccceec--------c------------------
Confidence 468999999999999999999999999999999987653211 11 100000 0
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.+ . ....+.+...+++++.. .. +. ...+...+.+.|.+.+.+
T Consensus 71 --------~~-~------~~~~~~l~~~gi~~~~~---------------~~---g~-----~~~~~~el~~~L~~~a~e 112 (254)
T TIGR00292 71 --------VV-E------KPAHEILDEFGIRYEDE---------------GD---GY-----VVADSAEFISTLASKALQ 112 (254)
T ss_pred --------cc-c------chHHHHHHHCCCCeeec---------------cC---ce-----EEeeHHHHHHHHHHHHHH
Confidence 00 0 01111223333331100 00 00 123456788889999999
Q ss_pred CCCEEEcCceEEEEEEecccCC-CeEEEEcC-----------CCcEEEcCEEEEcCCCCh
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVK-GGVTVVTS-----------NGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~-----------~g~~i~ad~VV~A~G~~s 213 (413)
.|+++++++.|.++.. +++. ....|.+. +..+++|+.||.|||..+
T Consensus 113 ~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 113 AGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred cCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 9999999999999987 5332 23344332 123789999999999765
No 88
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.40 E-value=2.3e-12 Score=122.87 Aligned_cols=193 Identities=20% Similarity=0.211 Sum_probs=97.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCCeeE
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGYKVY 87 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 87 (413)
||+|||+|++|++||+.++++|.+|+||||....++ ++....+.+........ ...........+.++.+.......
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg--~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG--SSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLND 78 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS--GGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc--ccccccCceeeecccccccccccccccccceeeecccccccc
Confidence 899999999999999999999999999999987654 33222333332211100 000000112222233222211100
Q ss_pred EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHH-HHHHcCCcccCCCCeEEEE-ecC---CceeChHHHHHHHHHH
Q 015088 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ-VLEKYSGRIEIPENWVGVA-TEL---GGVIKPTKAVSMFQTL 162 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~ 162 (413)
...+. .-.+...+..+++.+.++++..-.... ....++. . ........ ... ........+...|.+.
T Consensus 79 --~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 150 (417)
T PF00890_consen 79 --PDLVR---AFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGG-H--SPRWRSPPGNPDPPFGGLGGGKALIEALAKA 150 (417)
T ss_dssp --HHHHH---HHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETT-E--SSTEEEEESSTTSSSHCCCHHHHHHHHHHHH
T ss_pred --cchhh---hhhhcccceehhhhhhcccccccccccccccccCC-c--cccceeeeccccccccccccHHHHHHHHHHH
Confidence 00000 001122345666666666543310000 0000000 0 00101111 111 0122447788999999
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+++.|++|+++++|++|.. +++ .++.+.. .+|+ ++.|+.||+|||++..
T Consensus 151 ~~~~gv~i~~~~~~~~Li~--e~g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLIT--EDG-RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHTTEEEEESEEEEEEEE--ETT-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HhhcCeeeeccceeeeEEE--eCC-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 9999999999999999998 743 4444432 3555 6889999999999986
No 89
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.40 E-value=1e-11 Score=120.66 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=57.0
Q ss_pred EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
+++.+.+|. ..+++.|.+.++++|++|+++++|++|.. ++ +..+.|++.+|++++||.||+|+|.|..
T Consensus 220 g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~--~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 220 GINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIIL--EN-GKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred eEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEe--cC-CcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 555566665 57899999999999999999999999987 63 4677888888888999999999998753
No 90
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=2.7e-11 Score=118.67 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHH
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQ 79 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 79 (413)
|...+..+||+|||+|.||++||+.+ +.|.+|+||||.....+ +++....+.+..... ...... .+..+.
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~g-G~s~~a~gg~~~~~~~~d~~~~-------~~~d~~ 71 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKS-GCTVMAEGGYNAVLNPEDSFEK-------HFEDTM 71 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCC-ccccccCceEEEeCCCCCCHHH-------HHHHHH
Confidence 44445678999999999999999999 99999999999865222 222222222221111 111111 111111
Q ss_pred HHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088 80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSM 158 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
...... .+ ..+ ...-.+.....++++..+|+++..-....+. ..+.. .......+.. -.....+...
T Consensus 72 ~~~~~~--~d-~~l--v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g----~~~~r~~~~~---~~~G~~i~~~ 139 (543)
T PRK06263 72 KGGAYL--ND-PKL--VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGG----QSFNRTCYAG---DRTGHEMMMG 139 (543)
T ss_pred HHhcCC--CC-HHH--HHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCC----eEcCeEEECC---CCCHHHHHHH
Confidence 110000 00 000 0000011134455666677664321100000 00011 0000111111 0123567788
Q ss_pred HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088 159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~ 214 (413)
|.+.+++.|+++++++.|+++.. ++++..+.+. . .+|+ .+.|+.||+|||++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 88888889999999999999987 6332244333 2 4564 6899999999999763
No 91
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.39 E-value=5.4e-11 Score=113.78 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=61.5
Q ss_pred eeChHHHHHHHHHHHHHCC---CEEEcCceEEEEEEecc----c-CCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 149 VIKPTKAVSMFQTLAIKNG---AVLRDNMEVKTVLKVKD----A-VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~~~----~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
.++-..+.+.|.+.+.+.+ ++++++++|++++. . + ++..+.|++.+|++++||.||.|.|.+|. + ++.
T Consensus 113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~--~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-v-R~~ 188 (437)
T TIGR01989 113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTI--PSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-V-RKA 188 (437)
T ss_pred EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEe--ccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-h-HHH
Confidence 3455677788888887765 89999999999974 3 1 13567888888989999999999999883 3 333
Q ss_pred cCCccceeEEEEEEEEEE
Q 015088 221 TGLELPIQAVETTVCYWR 238 (413)
Q Consensus 221 ~g~~~~~~~~~g~~~~~~ 238 (413)
.++...-..+....++..
T Consensus 189 ~gi~~~g~~y~q~~~v~~ 206 (437)
T TIGR01989 189 ANIDTTGWNYNQHAVVAT 206 (437)
T ss_pred cCCCccceeeccEEEEEE
Confidence 366655555554444443
No 92
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.3e-11 Score=100.73 Aligned_cols=139 Identities=23% Similarity=0.187 Sum_probs=90.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
..||+|||||++|++|||+|+++|++|+|+|++...||.....+ .+.+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG---mlf~~i--------------------------- 79 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG---MLFNKI--------------------------- 79 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc---ccccee---------------------------
Confidence 47999999999999999999999999999999987764322211 111000
Q ss_pred EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN 166 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (413)
.+ . +.....+++.+++++... .++ ...|+..++..|...+.+.
T Consensus 80 -------Vv-~------~~a~~iL~e~gI~ye~~e------------------~g~-----~v~ds~e~~skl~~~a~~a 122 (262)
T COG1635 80 -------VV-R------EEADEILDEFGIRYEEEE------------------DGY-----YVADSAEFASKLAARALDA 122 (262)
T ss_pred -------ee-c------chHHHHHHHhCCcceecC------------------Cce-----EEecHHHHHHHHHHHHHhc
Confidence 00 0 112223344454432211 011 2446778888888889999
Q ss_pred CCEEEcCceEEEEEEecccCCCeEEEEc------CCC-----cEEEcCEEEEcCCCChH
Q 015088 167 GAVLRDNMEVKTVLKVKDAVKGGVTVVT------SNG-----EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~VV~A~G~~s~ 214 (413)
|++|+..+.|.++.. .++.+...|.+ ..+ -.++|+.||-|||.-+.
T Consensus 123 Gaki~n~~~veDvi~--r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~ 179 (262)
T COG1635 123 GAKIFNGVSVEDVIV--RDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE 179 (262)
T ss_pred CceeeecceEEEEEE--ecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence 999999999999887 53323333322 112 26899999999998653
No 93
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=3.5e-11 Score=118.75 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=101.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHHh
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
+..+||+|||+|+||++||+.+++.|.+|+||||....++. +....++ +..... .....+. .+....+.
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~-s~~a~Gg-i~a~~~~~~~Ds~e~------~~~d~~~~- 80 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH-TVAAQGG-ISASLGNMGEDDWRW------HMYDTVKG- 80 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc-hhhhcCC-cccccCCCCCCCHHH------HHHHHHHh-
Confidence 35689999999999999999999999999999998765432 2222222 221111 0000000 01111111
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccC-----CCCeEEEEecCCceeChHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEI-----PENWVGVATELGGVIKPTKAV 156 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 156 (413)
+.. ......+. .-.+.....++++..+|+++........ ...++. ... +......+... -....+.
T Consensus 81 g~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~~~~~~~~~~~~R~~~~~d---~tG~~i~ 152 (598)
T PRK09078 81 SDW-LGDQDAIE---YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGG-MTTNYGKGPPAQRTCAAAD---RTGHAIL 152 (598)
T ss_pred ccC-CCCHHHHH---HHHHHHHHHHHHHHHcCCcceecCCCceeecccCc-eecccCCCCccceeEecCC---CCHHHHH
Confidence 000 00000000 0001113445566667776532111000 001111 000 00011111111 1234678
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChHH
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~~ 215 (413)
..|.+.+++.|+++++++.|++|.. ++++.++.+. ..+|+ .+.|+.||+|||++...
T Consensus 153 ~~L~~~~~~~gi~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 153 HTLYQQSLKHNAEFFIEYFALDLIM--DDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHhhcCCEEEEeEEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 8888888889999999999999987 6323344443 34665 68899999999998753
No 94
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=4.3e-11 Score=117.77 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=103.3
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc---CCCChHHHHHHHHHHHHH
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYHPMVLESCLLWEQ 77 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 77 (413)
|......+||+|||+|.||++||+.+++.|.+|+||||....++. +.... +.+.... .......+ +..
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~-t~~a~-Ggi~a~~~~~~~Ds~e~~-------~~D 71 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH-TVSAQ-GGITVALGNTHEDNWEWH-------MYD 71 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc-cHHhh-hhHhhhcCCCCCCCHHHH-------HHH
Confidence 333345689999999999999999999999999999998765432 22222 2221111 11111111 111
Q ss_pred HHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCC----CCeEEEEecCCceeCh
Q 015088 78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIP----ENWVGVATELGGVIKP 152 (413)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 152 (413)
..+... . ......+ ..-.+...+.++++..+|+++........ ...++. .... ......+..+ -..
T Consensus 72 ~~~~g~-~-~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~~~~~~~~r~~~~~~---~~G 142 (588)
T PRK08958 72 TVKGSD-Y-IGDQDAI---EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAAAAD---RTG 142 (588)
T ss_pred HHHHhC-C-CCCHHHH---HHHHHHHHHHHHHHHHcCCCcccCCCCceeeccccc-ccccccccccceeEecCC---CCH
Confidence 111100 0 0000000 00001123556667777877632111000 001111 0000 0011111111 123
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
..+...|.+.+.+.|+++++++.++++.. ++++..+.+. ..+|+ .+.|+.||+|||++..
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 56788888888888999999999999987 5333444443 34554 6789999999999874
No 95
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=3.4e-11 Score=118.20 Aligned_cols=188 Identities=13% Similarity=0.064 Sum_probs=98.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHH-HHHHHHHHhCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCL-LWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 84 (413)
..+||+|||+|.||++||+.+++.|.+|+||||....++. +.... +.+......... ...+.+ .+...... +.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~-s~~a~-Ggi~~~~~~~~~---~~Ds~e~~~~d~~~~-g~ 77 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH-SAAAE-GGIAAYIPGNSD---PNDNPDYMTYDTVKG-GD 77 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc-chhhc-cchhhhccccCC---CcccHHHHHHHHHHh-hc
Confidence 4689999999999999999999999999999998765432 22222 222111100000 000011 11111111 00
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
. ......+ ..-.+...+.++++..+|+++..-....+ ...++. .......+... -....++..|.+.+
T Consensus 78 ~-~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~~ 146 (566)
T PRK06452 78 Y-LVDQDAA---ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG----QTYPRTRFVGD---KTGMALLHTLFERT 146 (566)
T ss_pred c-CCCHHHH---HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcC----ccCCeeEecCC---CCHHHHHHHHHHHH
Confidence 0 0000000 00001123455666777776532111000 011111 00111111111 12356778888888
Q ss_pred HHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCCh
Q 015088 164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s 213 (413)
.+.|+++++++.++++.. ++ +..+.+.. .+|+ .+.|+.||+|||++.
T Consensus 147 ~~~gv~i~~~~~~~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVT--DN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEE--EC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 888999999999999987 63 34444432 2443 678999999999876
No 96
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=3.2e-11 Score=117.83 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=99.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGY 84 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 84 (413)
..+||+|||+|+||++||+.+++.|.+|+||||....++ ++....+.+..... ..... ..+..+.+..+.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~ds~e-------~~~~d~~~~g~g 85 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGDSPE-------AHVADTLVAGAG 85 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCCCHH-------HHHHHHHHhcCC
Confidence 468999999999999999999999999999999987643 23222222221111 11111 111222111100
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
. .....+ ..-.+...+.++++.++|+++..-....+ ...+.. ......+.. .+......+.+.|.+.+
T Consensus 86 ~--~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-----~~~~r~~~~-~~d~~G~~i~~~L~~~~ 154 (541)
T PRK07804 86 L--CDPDAV---RSLVAEGPRAVRELVALGARFDESPDGRWALTREGG-----HSRRRIVHA-GGDATGAEVQRALDAAV 154 (541)
T ss_pred C--CCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCC-----eecCeeEec-CCCCCHHHHHHHHHHHH
Confidence 0 000000 00001112345566667776432110000 000000 000001111 01113457888899999
Q ss_pred HHCCCEEEcCceEEEEEEecccCCCe--EEEE-----cCCC-cEEEcCEEEEcCCCChH
Q 015088 164 IKNGAVLRDNMEVKTVLKVKDAVKGG--VTVV-----TSNG-EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~-----~~~g-~~i~ad~VV~A~G~~s~ 214 (413)
++.|+++++++.|+++.. ++++.. +.+. ..++ ..+.|+.||+|+|+++.
T Consensus 155 ~~~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 155 RADPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HhCCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 889999999999999987 632233 3333 2333 26899999999999774
No 97
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.36 E-value=6.6e-12 Score=120.35 Aligned_cols=180 Identities=20% Similarity=0.186 Sum_probs=96.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCCee
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
||||||+|++|++||+.++++| .+|+||||....++. +....+.+........ ..........+++.+.+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~--s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 76 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN--SAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRG-- 76 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc--ccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCC--
Confidence 8999999999999999999999 999999999876543 2222222221111000 000000001112222111000
Q ss_pred EEeeceeeeCCCChhhH-------HHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 87 YFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
..+.+.+ ....+++. .++.++... . ..... ......+.+..+......+++.|
T Consensus 77 ----------~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~---~-~~~~~-----~~~~~~~~~~~g~~~g~~l~~~l 136 (439)
T TIGR01813 77 ----------INDPELVRILAEESADAVDWLQ-DGVGARLDD---L-IQLGG-----HSVPRAHRPTGGAGSGAEIVQKL 136 (439)
T ss_pred ----------CCCHHHHHHHHhccHHHHHHHH-hCCCeeecc---c-cccCC-----cCCCccccCCCCCCCHHHHHHHH
Confidence 0001101 12233333 232221110 0 00000 00011122223344567889999
Q ss_pred HHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088 160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.+.+++.|++++++++|+++.. ++++.. +.+.+.+++ .+.++.||+|+|+++.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 9999999999999999999987 633333 334444554 4788999999999875
No 98
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.36 E-value=4.3e-10 Score=106.07 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=48.0
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecc-cCCCeEEEE--cCC-----C--cEEEcCEEEEcCCCChHHhhh
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD-AVKGGVTVV--TSN-----G--EKFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~~~v~--~~~-----g--~~i~ad~VV~A~G~~s~~l~~ 218 (413)
.++-..+-+.|.+.+.+.|++++..+ +.++.. . +.++.+.|+ ..+ | .+++|+.||.|+|..| .+.+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~ 164 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSL--PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAK 164 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEe--ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHH
Confidence 46667888889999999999998764 777753 2 112344443 222 3 3699999999999987 4555
Q ss_pred hhcCC
Q 015088 219 RITGL 223 (413)
Q Consensus 219 ~~~g~ 223 (413)
.+ +.
T Consensus 165 ~~-g~ 168 (398)
T TIGR02028 165 EI-DA 168 (398)
T ss_pred Hh-CC
Confidence 54 54
No 99
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.36 E-value=5.3e-11 Score=117.70 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=100.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
..+||+|||+|+||++||+.+++.|.+|+||||....++. +....+++..... ....... .+.+..+. +
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~-s~~a~Ggi~a~~~~~~~Ds~e~-------~~~Dt~~~-g 119 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH-TVAAQGGINAALGNMTEDDWRW-------HMYDTVKG-S 119 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc-hHHhhcCceeecCCCCCCCHHH-------HHHHHHHh-h
Confidence 4689999999999999999999999999999998765432 2222222211111 1111111 11111111 0
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCC-----CCeEEEEecCCceeChHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIP-----ENWVGVATELGGVIKPTKAVS 157 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 157 (413)
.. ..+...+. .-.+...+.++++..+|+++..-....+ ...++. .... ......+. +--....+..
T Consensus 120 ~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s~~~~~~g~~~r~~~~---~d~tG~~i~~ 191 (635)
T PLN00128 120 DW-LGDQDAIQ---YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG-QSLDFGKGGQAYRCACA---ADRTGHAMLH 191 (635)
T ss_pred CC-CCCHHHHH---HHHHhHHHHHHHHHhCCCccccCCCCceeeccccc-cccccCCCcceeeeecc---CCCCHHHHHH
Confidence 00 00000000 0001123455666777776532110000 011111 0000 00011111 1112356788
Q ss_pred HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088 158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.|.+.+++.|++++.++.++++.. ++++....+. . .+|+ .+.|+.||+|||++..
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIM--DSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEE--cCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 888888888999999999999877 5323344443 2 3564 6789999999999875
No 100
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.35 E-value=6.2e-11 Score=117.21 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=101.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
.++||+|||+|.||++||+.+++.|.+|+||||....++. +....+++..... ........ +....+...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~-t~~a~Ggi~a~~~~~~~Ds~e~~-------~~D~~~~g~ 99 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH-TVAAQGGINAALGNMTEDDWRWH-------AYDTVKGSD 99 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC-chhhcCCeeEEecCCCCCCHHHH-------HHHHHHHhC
Confidence 4689999999999999999999999999999998775432 2222222211111 11111111 111111100
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCC-----CCeEEEEecCCceeChHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIP-----ENWVGVATELGGVIKPTKAVS 157 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 157 (413)
. ..+...+ ..-.+...+.++++.++|+++.......+. ..++. .... ......+..+ -....+..
T Consensus 100 ~--~~d~~lv---~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~~r~~~~~d---~tG~~i~~ 170 (617)
T PTZ00139 100 W--LGDQDAI---QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGG-QSLKFGKGGQAYRCAAAAD---RTGHAMLH 170 (617)
T ss_pred C--CCCHHHH---HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCc-ccccccCCCccceeeecCC---CcHHHHHH
Confidence 0 0000000 000011234566667778776432111000 01111 0000 0001111110 12357888
Q ss_pred HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088 158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.|.+.+++.|++++.++.++++.. ++++.+..+ ...+|+ .+.|+.||+|||++..
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIM--DEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEE--CCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 999999999999999999999876 433334333 334564 6789999999999864
No 101
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.35 E-value=6e-10 Score=105.23 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~VV~A~G~~s 213 (413)
..+.+.|.+.+.+.|++++++++|++++. .+ +..+.|+. .+|+ +++||.||.|.|.+|
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~--~~-~~~~~V~~~~~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHD--FD-SDRPYVTYEKDGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEe--cC-CCceEEEEEcCCeEEEEEeCEEEECCCCCC
Confidence 45667777777788999999999999865 32 23344443 3564 689999999999987
No 102
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=4.7e-11 Score=118.44 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=96.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc-c--CCCChHHHHHHHHHHHHHHHHHh
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT-Y--PEDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
.++||+|||+|.||++||+.+++.|.+|+||||....++..+....+++.... . ..... ...+....+.-
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~-------~~~~~d~~~~g 106 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSV-------YRLFYDTVKGG 106 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCH-------HHHHHHHHHhc
Confidence 46899999999999999999999999999999876543222211111221100 0 00101 11112111110
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHH-HHHHcCCcccCCCCeEEEEecC-CceeChHHHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ-VLEKYSGRIEIPENWVGVATEL-GGVIKPTKAVSMFQ 160 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 160 (413)
.. ......+.. -.......++++..+|+++..-.... ....++. .......+... .+..-...+.+.|.
T Consensus 107 ~~--~~d~~lv~~---l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gg----hs~~R~~~~~~~tG~~i~~~l~~~L~ 177 (640)
T PRK07573 107 DF--RAREANVYR---LAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG----AQVSRTFYARGQTGQQLLLGAYQALS 177 (640)
T ss_pred CC--CCCHHHHHH---HHHHHHHHHHHHHhcCCccccCCCCceeccccCC----cccceeEeCCCCCchhHHHHHHHHHH
Confidence 00 000000000 00112355666777787653210000 0001111 00111111111 11110112235666
Q ss_pred HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088 161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.+++.|++|++++.|+++.. ++ +.++.|.. .+|+ .+.|+.||+|||+++.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~--d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVV--VD-GRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEE--eC-CEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 677788999999999999987 63 33444432 2454 6889999999999775
No 103
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.34 E-value=2.1e-11 Score=120.50 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
..+||+|||+|.||++||+.+++. |.+|+||||....++...+.+.. .+......... ....++.+.....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~-~~~~~~~~~ds------~e~~~~d~~~~~~ 82 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLS-AINAYIGEGET------PEDYVRYVRKDLM 82 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCcc-ccccccccCCC------HHHHHHHHHHhcc
Confidence 358999999999999999999998 99999999987643221111111 11111111000 0011112211100
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA 163 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (413)
.. .....+ ..-.+...+.++++..+|+++..... .. +. ... .....+++..+.+.|.+.+
T Consensus 83 -~~-~d~~lv---~~~~~~s~~~i~~L~~~Gv~f~~~~~-------G~-~~-~~g------~~~~~~~G~~~~~~L~~~a 142 (608)
T PRK06854 83 -GI-VREDLV---YDIARHVDSVVHLFEEWGLPIWKDEN-------GK-YV-RRG------RWQIMINGESYKPIVAEAA 142 (608)
T ss_pred -CC-CCHHHH---HHHHHhHHHHHHHHHHcCCeeeecCC-------CC-cc-ccC------CccCCCChHHHHHHHHHHH
Confidence 00 000000 00001123455566667765432110 00 00 000 0001134567778888888
Q ss_pred HHCC-CEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088 164 IKNG-AVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
++.+ +++++++.|+++.. ++ +..+.+ .+.+++ .+.|+.||+|||+++.
T Consensus 143 ~~~ggV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 143 KKALGDNVLNRVFITDLLV--DD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HhcCCCEEEeCCEEEEEEE--eC-CEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 8775 99999999999986 53 233333 334554 6899999999999874
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.34 E-value=1.7e-11 Score=115.44 Aligned_cols=177 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCcee-ecccCCCChHHHHHHHHHHHHHHHHHhCCeeEEe
Q 015088 11 IVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI-RATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFK 89 (413)
Q Consensus 11 vIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (413)
+|||||++|+++|+.|+++|++|+|+|+....|+.....+++.+. .+......+.........+.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~-------- 72 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR-------- 72 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHh--------
Confidence 699999999999999999999999999998765432222222111 11000000000000000000000000
Q ss_pred eceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCE
Q 015088 90 AHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAV 169 (413)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 169 (413)
. ......+++...|+++..... ..++ +. .-....+.+.+.+.+++.|++
T Consensus 73 --------~---~~~d~~~~~~~~Gv~~~~~~~-----------------g~~~-p~--~~~a~~v~~~L~~~l~~~gv~ 121 (400)
T TIGR00275 73 --------F---SNKDLIDFFESLGLELKVEED-----------------GRVF-PC--SDSAADVLDALLNELKELGVE 121 (400)
T ss_pred --------C---CHHHHHHHHHHcCCeeEEecC-----------------CEeE-CC--CCCHHHHHHHHHHHHHHCCCE
Confidence 0 112333444555554322110 0011 10 112367888899999999999
Q ss_pred EEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh----------HHhhhhhcCCcc-ceeEEEE
Q 015088 170 LRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV----------GKLVKRITGLEL-PIQAVET 232 (413)
Q Consensus 170 i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s----------~~l~~~~~g~~~-~~~~~~g 232 (413)
++++++|+++.. + ++.+.++++ ++++.+|.||+|+|.++ -.++.++ |..+ +..|...
T Consensus 122 i~~~~~V~~i~~--~--~~~~~v~~~-~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~l-G~~i~~~~P~l~ 189 (400)
T TIGR00275 122 ILTNSKVKSIKK--D--DNGFGVETS-GGEYEADKVILATGGLSYPQLGSTGDGYEIAESL-GHTIVPPVPALV 189 (400)
T ss_pred EEeCCEEEEEEe--c--CCeEEEEEC-CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHC-CCCEecccceEe
Confidence 999999999977 6 356777774 45699999999999865 3556665 6542 4444333
No 105
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.34 E-value=3.3e-11 Score=114.49 Aligned_cols=183 Identities=12% Similarity=0.073 Sum_probs=94.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
..+||+|||+|.||++||+.+. .|.+|+||||....++. +....+.+......... ..+++.+.+.-...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~--s~~a~ggi~~~~~~d~~-------~~~~~d~~~~g~~~ 72 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN--TYLAQGGISVARNKDDI-------TSFVEDTLKAGQYE 72 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc--hHHHhHhheeCCCCCCH-------HHHHHHHHHHhCCC
Confidence 4689999999999999999985 69999999998876432 22112222111111111 11222221110000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
.....+ ..-.+...+.++++.++|+++..-.........+. .......+ +. ......+.+.|.+.+++
T Consensus 73 --~d~~lv---~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~----~~~~r~~~-~~--~~~g~~l~~~L~~~~~~ 140 (433)
T PRK06175 73 --NNLEAV---KILANESIENINKLIDMGLNFDKDEKELSYTKEGA----HSVNRIVH-FK--DNTGKKVEKILLKKVKK 140 (433)
T ss_pred --CCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCceeeeccCc----cccCeEEe-cC--CCChHHHHHHHHHHHHh
Confidence 000000 00001123455666667765432110000000000 00001111 11 11235678888877775
Q ss_pred -CCCEEEcCceEEEEEEecccCCCeEEEE-cCCCc--EEEcCEEEEcCCCCh
Q 015088 166 -NGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 -~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~VV~A~G~~s 213 (413)
.|++|+++++|++|.. ++ +..+.+. +.++. .+.|+.||+|+|++.
T Consensus 141 ~~gV~i~~~t~v~~Li~--~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 141 RKNITIIENCYLVDIIE--ND-NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred cCCCEEEECcEeeeeEe--cC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 4999999999999977 53 2333322 22343 589999999999865
No 106
>PRK08275 putative oxidoreductase; Provisional
Probab=99.33 E-value=9.7e-11 Score=115.03 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=98.9
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHH
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQ 77 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 77 (413)
|+..+..+||+|||+|.||++||+.+++. |.+|+||||....++...+.+..++...... .... ...+..
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~-------~~~~~d 75 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATP-------EQYTKE 75 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCH-------HHHHHH
Confidence 44444678999999999999999999987 6899999998764322211121111110000 0000 111111
Q ss_pred HHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCc---eeChHH
Q 015088 78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGG---VIKPTK 154 (413)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 154 (413)
+.+... .. .....+.. -.......++++..+|+++..... +. +.... ....... .-....
T Consensus 76 ~~~~~~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~-------g~-~~~~~----~~~~~~~~~~~~~G~~ 138 (554)
T PRK08275 76 ITIAND-GI-VDQKAVYA---YAEHSFETIQQLDRWGVKFEKDET-------GD-YAVKK----VHHMGSYVLPMPEGHD 138 (554)
T ss_pred HHHhcC-CC-ccHHHHHH---HHHhhHHHHHHHHHCCCeeEeCCC-------CC-Eeeec----ccccCcccccCCChHH
Confidence 111100 00 00000000 000113445566667766532110 00 00000 0000000 002346
Q ss_pred HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.+.|.+.+++.|+++++++.|++|.. ++++....+. +.+|+ .+.|+.||+|||+++.
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLT--DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEE--cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 788898988889999999999999987 5223333332 34564 5889999999999763
No 107
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.33 E-value=4.8e-11 Score=114.85 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=51.4
Q ss_pred ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
+++|...+...+.+.+++. |++++ .+.|+++.. ++ +....|.+.+|..+.|+.||+|+|.|.+
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~--e~-grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV--EN-GRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 5788899999999888876 78886 678999876 52 3566788888988999999999997763
No 108
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.33 E-value=3.9e-10 Score=108.85 Aligned_cols=43 Identities=40% Similarity=0.549 Sum_probs=38.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~ 51 (413)
+|+|||||++|++||+.|+++| ++|+|+|+++..||+..+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~ 46 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK 46 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence 6999999999999999999988 899999999999988776543
No 109
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.33 E-value=6.9e-10 Score=105.67 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=47.0
Q ss_pred eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
++...+.+.|.+.+. ...++++++|++|.. + ++.+.+.+.+|.++++|.||.|+|.+|.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEE--Q--AEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEe--c--CCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 555677777776653 356888999999987 6 4568888888888999999999999984
No 110
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.33 E-value=9.7e-12 Score=106.29 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
...+.+.+...+++.+.+++++++|+++.. + ++.|.|++.++++++|++||+|+|.++.+..+.+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~--~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRR--D--GDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEE--E--TTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEE--e--ccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 356778888889999999999999999998 7 4559999999977999999999998765444333
No 111
>PLN02985 squalene monooxygenase
Probab=99.32 E-value=1.2e-09 Score=105.92 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=46.9
Q ss_pred ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCC-CeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhh
Q 015088 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
..++-..+.+.|.+.+.+. +++++.+ +|+++.. +++. .++.+.+.+|+ ++.||.||.|+|.+|. +-+.+
T Consensus 142 ~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~--~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l 214 (514)
T PLN02985 142 RSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE--EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSL 214 (514)
T ss_pred eeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE--cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHh
Confidence 3455678889999888776 7998854 6777766 5221 13444455665 4679999999999884 33333
No 112
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.32 E-value=1.5e-10 Score=109.67 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=47.5
Q ss_pred eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEc---CCCcEEEcCEEEEcCCCChH
Q 015088 150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~VV~A~G~~s~ 214 (413)
++-..+.+.|.+.+.+. +++++++++|+++.. + ++.+.++. .+++++++|.||.|.|.+|.
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--~--~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--T--GNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--C--CCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 45578888898888764 899999999999987 6 34455543 34457999999999999883
No 113
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.31 E-value=4.8e-11 Score=117.67 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=37.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
+.++||+|||+|++|+++|+.++++|.+|+||||....+|.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 45799999999999999999999999999999999877544
No 114
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=2.9e-11 Score=119.14 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=97.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHH
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQS 80 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~ 80 (413)
.+||+|||||+||++||+.+++.| .+|+||||....++ .+....++ +.... ....... .+.....
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg-~s~~a~GG-i~a~~~~~~~~ds~e~-------~~~d~~~ 73 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS-HSVAAQGG-IAASLKNVDPEDSWEA-------HAFDTVK 73 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch-hhHHhccc-hhhhccCCCCCCCHHH-------HHHHHHH
Confidence 589999999999999999999874 89999999876543 22222222 21111 1111111 0111111
Q ss_pred HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
. +.. ......+. .-.......++++..+|+++.......+. ..+.. .......+... .....+...|
T Consensus 74 ~-~~~-l~d~~~v~---~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~tG~~i~~~L 141 (575)
T PRK05945 74 G-SDY-LADQDAVA---ILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGG----HSHNRTCYAAD---KTGHAILHEL 141 (575)
T ss_pred H-hCC-CCCHHHHH---HHHHHHHHHHHHHHHcCCceEECCCCcEeeccccc----cccCeeEecCC---CChHHHHHHH
Confidence 1 000 00000000 00011134445566677765432211100 00111 00011111111 1235678888
Q ss_pred HHHHHHCCCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088 160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.+.+++.|+++++++.|+++.. +++ .... +.+.+|+ .+.|+.||+|||+++.
T Consensus 142 ~~~~~~~gi~i~~~t~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 142 VNNLRRYGVTIYDEWYVMRLIL--EDN-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHhhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 8888888999999999999987 532 3222 2344554 5899999999999864
No 115
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=1e-10 Score=113.24 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=98.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
.+||+|||+|+||++||+.+++.|. |+||||....++ ++....+.+.......... ...+..+.+....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds~------e~~~~d~~~~~~~-- 70 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDSI------DSHVEDTLAAGAG-- 70 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCCH------HHHHHHHHHhcCC--
Confidence 4799999999999999999999997 999999976543 2222222222111111000 0111222111000
Q ss_pred EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
..+...+.. -.+.....++++..+|+++.......+. ...+. .......+. +......+...|.+.+++
T Consensus 71 ~~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~---~~~~G~~l~~~L~~~~~~ 140 (488)
T TIGR00551 71 ICDREAVEF---VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGG----HSYRRILHA---ADATGREVITTLVKKALN 140 (488)
T ss_pred cCCHHHHHH---HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCC----cCCCeEEEe---CCCCHHHHHHHHHHHHHh
Confidence 000000000 0011234556667777765322111100 00111 000111111 112346788889998887
Q ss_pred -CCCEEEcCceEEEEEEecccCCCeEEEEc--CCC-cEEEcCEEEEcCCCChH
Q 015088 166 -NGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNG-EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 -~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g-~~i~ad~VV~A~G~~s~ 214 (413)
.|+++++++.|++|.. ++ +....+.. .++ ..+.++.||+|+|+++.
T Consensus 141 ~~gi~i~~~~~v~~l~~--~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLI--ET-GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeec--cC-CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 6999999999999987 53 23333333 222 26899999999999875
No 116
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.30 E-value=1.8e-10 Score=107.16 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=98.1
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~ 227 (413)
..++...+.+.+.+.+.. .++++++|+++.. +.+.+ .+|++++|+.||.|.|..+..... .-.
T Consensus 84 ~~I~r~~f~~~l~~~l~~---~i~~~~~V~~v~~------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------~~~ 146 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE---GVILGRKAVGLDA------DGVDL--APGTRINARSVIDCRGFKPSAHLK------GGF 146 (370)
T ss_pred eEEEHHHHHHHHHHhhcc---cEEecCEEEEEeC------CEEEE--CCCCEEEeeEEEECCCCCCCcccc------cee
Confidence 344556666666554432 2677889998843 23555 577789999999999987542221 234
Q ss_pred eEEEEEEEEEEecCCCCCccccCCCCCeEE------EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHH
Q 015088 228 QAVETTVCYWRIKEGNEADYAVGGDFPSFA------SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS 301 (413)
Q Consensus 228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (413)
+...|..+.+.. +. .+ ..+.+. ..+...+|..|..... +.+-.+. ....|.. +.+...+.
T Consensus 147 Q~f~G~~~r~~~-p~-----~~--~~~~lMD~~~~q~~g~~F~Y~lP~~~~~--~lvE~T~-~s~~~~l---~~~~l~~~ 212 (370)
T TIGR01789 147 QVFLGREMRLQE-PH-----GL--ENPIIMDATVDQLAGYRFVYVLPLGSHD--LLIEDTY-YADDPLL---DRNALSQR 212 (370)
T ss_pred eEEEEEEEEEcC-CC-----CC--CccEEEeeeccCCCCceEEEECcCCCCe--EEEEEEe-ccCCCCC---CHHHHHHH
Confidence 455565554432 21 11 112221 1223467888876532 3332110 1110111 11224455
Q ss_pred HHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEe----cCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088 302 LKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVI----DFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374 (413)
Q Consensus 302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~i----g~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 374 (413)
|.+++.+. .+.. .+++....|+.|++-++.+.- +......|..-...-...|.|+..+--.|..||+.+.
T Consensus 213 l~~~~~~~--g~~~-~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~ 286 (370)
T TIGR01789 213 IDQYARAN--GWQN-GTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD 286 (370)
T ss_pred HHHHHHHh--CCCc-eEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC
Confidence 66666554 2222 245666668888755421110 0000000112222233456788888888888887774
No 117
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.30 E-value=2.4e-11 Score=120.68 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=98.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 84 (413)
...+||+|||||+||++||+.+++.|.+|+||||....++. +....+++ ....... ...........+.+..+....
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~-s~~a~GGi-~a~~g~~-~~g~~Ds~e~~~~Dt~k~~~~ 79 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH-SAAAQGGM-QASLGNA-VKGEGDNEDVHFADTVKGSDW 79 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc-hHHHhhhH-Hhhcccc-ccCCCCCHHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999998765432 11111121 1110000 000000001112222222111
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCH-----------------HHHHHHcCC-cccCCCCeEEEEecC
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDC-----------------RQVLEKYSG-RIEIPENWVGVATEL 146 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~ 146 (413)
.+...... .-.....+.++++..+|+++..... .+....... .+.-...+...+..+
T Consensus 80 ~~D~~~vr-----~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d 154 (657)
T PRK08626 80 GCDQEVAR-----MFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTAD 154 (657)
T ss_pred CCCHHHHH-----HHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCC
Confidence 00000000 0001113445555666665432110 000000000 000000111112111
Q ss_pred CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEc-CCCc--EEEcCEEEEcCCCChH
Q 015088 147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVT-SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~-~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+ ....+...|.+.+.+.|+++++++.|++|.. ++ +.+ +.+.+ .+|+ .+.|+.||+|||++..
T Consensus 155 -~--tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~--~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 155 -G--TGHTMLYAVDNEAIKLGVPVHDRKEAIALIH--DG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred -C--cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEE--EC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 1 1245667788888889999999999999987 63 233 33433 4665 5689999999998774
No 118
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=1.4e-10 Score=114.49 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=97.1
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHH
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQA 78 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g---~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 78 (413)
+..++||+|||+|+||++||+.+++.| .+|+||||....++. +....+++...... ....... +...
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~-s~~a~Gg~~a~~~~~~~ds~e~~-------~~d~ 73 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH-SVSAEGGTAAVLYPEKGDSFDLH-------AYDT 73 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC-ceecccccceeeccccCCCHHHH-------HHHH
Confidence 345689999999999999999999998 899999999876432 22121222111111 0000010 1111
Q ss_pred HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088 79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVS 157 (413)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
.+. +.. ......+. .-.+...+.++++.++|+++.......+ ...+.+ .......+... -....+.+
T Consensus 74 ~~~-g~~-~~d~~lv~---~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g----~~~~r~~~~~d---~tG~~i~~ 141 (577)
T PRK06069 74 VKG-SDF-LADQDAVE---VFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGG----MSFPRTTFAAD---KTGFYIMH 141 (577)
T ss_pred HHh-hcc-cCCHHHHH---HHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCC----cccceeeEcCC---CchHHHHH
Confidence 111 000 00000000 0001113445666777776532111000 000111 00111111111 01345778
Q ss_pred HHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCCh
Q 015088 158 MFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 158 ~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s 213 (413)
.|.+.+.+ .|+++++++.|+++.. ++ +..+. +...+|+ .+.|+.||+|||+++
T Consensus 142 ~L~~~~~~~~gv~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 142 TLYSRALRFDNIHFYDEHFVTSLIV--EN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHhcCCCEEEECCEEEEEEE--EC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 88887766 5999999999999987 53 22322 2334564 589999999999975
No 119
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.30 E-value=4.9e-11 Score=116.00 Aligned_cols=44 Identities=34% Similarity=0.459 Sum_probs=38.1
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
|+.-+.++||||||+| +|+++|+++++.|.+|+||||....|+.
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4444558999999999 9999999999999999999999876543
No 120
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.30 E-value=1.3e-10 Score=114.88 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=96.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
||+|||+|++|++||+.+++.|.+|+||||....++. +....+.+..... ...... ..+.........
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~--s~~a~Gg~~~~~~~~~~~d~~e------~~~~d~~~~~~~- 71 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH--TVAAQGGMAAALGNVDPDDSWE------WHAYDTVKGSDY- 71 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc--chhhccCeEeecCCCCCCccHH------HHHHHHHHHhCC-
Confidence 8999999999999999999999999999998765332 2111122211111 000000 001111110000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
......+.. -.+.....++++..+|+++........ ...+.. .......+... .....+...|.+.++
T Consensus 72 -~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~~~ 140 (566)
T TIGR01812 72 -LADQDAVEY---MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGG----HSKDRTCYAAD---KTGHALLHTLYEQCL 140 (566)
T ss_pred -CCCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCcEeeccccc----cccCeeEECCC---CCHHHHHHHHHHHHH
Confidence 000000000 000112445566677776532211100 000111 00111111111 123467788888888
Q ss_pred HCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.|+++++++.|++|.. ++ +....+. ..+|+ .+.|+.||+|+|+++.
T Consensus 141 ~~gv~i~~~~~v~~L~~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIH--DD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HcCCEEEeccEEEEEEE--eC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 88999999999999987 63 2333332 34564 6899999999999763
No 121
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.29 E-value=3.9e-11 Score=98.65 Aligned_cols=139 Identities=23% Similarity=0.193 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
..+||+|||||++|++||++|++.|++|+|+|++...||.....+. .+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~--lf~~---------------------------- 65 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGM--LFNK---------------------------- 65 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CT--T-------------------------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccccc--ccch----------------------------
Confidence 3689999999999999999999999999999998777543322211 0000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
+.+.. .....+.+.+++++... .++ ...|+..+...|...+.+
T Consensus 66 -------iVVq~-------~a~~iL~elgi~y~~~~------------------~g~-----~v~d~~~~~s~L~s~a~~ 108 (230)
T PF01946_consen 66 -------IVVQE-------EADEILDELGIPYEEYG------------------DGY-----YVADSVEFTSTLASKAID 108 (230)
T ss_dssp -------EEEET-------TTHHHHHHHT---EE-S------------------SEE-----EES-HHHHHHHHHHHHHT
T ss_pred -------hhhhh-------hHHHHHHhCCceeEEeC------------------CeE-----EEEcHHHHHHHHHHHHhc
Confidence 00000 00111223333321110 112 234777888888888888
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEc------CCC-----cEEEcCEEEEcCCCCh
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVT------SNG-----EKFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~VV~A~G~~s 213 (413)
.|++++..+.|.++.. .+++....|.+ ..| -.++|+.||-|||.-+
T Consensus 109 aGakifn~~~vEDvi~--r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 109 AGAKIFNLTSVEDVIV--REDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp TTEEEEETEEEEEEEE--ECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred CCCEEEeeeeeeeeEE--EcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 9999999999999987 53233333332 122 1799999999999755
No 122
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=2.2e-10 Score=113.05 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHH
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~ 81 (413)
+...+||+|||+|+||++||+.+++. .+|+|+||....++ ++....+.+..... ....... .+......
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~~~D~~e~------~~~d~~~~ 72 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS--HTGAAQGGMCAALANVEEDNWEW------HTFDTVKG 72 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC--CchhhhcchhhcccCCCCCCHHH------HHHHHHHh
Confidence 34578999999999999999999986 89999999876533 22222222221111 0000000 11111111
Q ss_pred hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHH-HHHHHcCCcccCC----CCeEEEEecCCceeChHHHH
Q 015088 82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR-QVLEKYSGRIEIP----ENWVGVATELGGVIKPTKAV 156 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (413)
+.. ......+ ..-.+...+.++++..+|+++...... .....++. .... ......+.. -.....+.
T Consensus 73 -g~~-~~d~~~v---~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~r~~~~~---~~tG~~i~ 143 (583)
T PRK08205 73 -GDY-LVDQDAA---EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGG-HTRDHGKAPVRRACYAA---DRTGHMIL 143 (583)
T ss_pred -hcC-CCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCceeeccccc-ccccccCCCccceeccC---CCCHHHHH
Confidence 000 0000000 000011234566777788776432111 11111121 0000 000111111 01245788
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccC---CCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAV---KGGVTV---VTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~---~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
..|.+.+++.|+++++++.|++|.. +++ +.+..+ ...+|+ .+.|+.||+|||+++.
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~--~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLL--TETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEe--cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 8899989889999999999999987 531 233333 234554 5889999999999774
No 123
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.29 E-value=8.5e-11 Score=115.87 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=50.6
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeE--EEEcCCCc-EEEc-CEEEEcCCCChH
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGV--TVVTSNGE-KFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~-~i~a-d~VV~A~G~~s~ 214 (413)
...++..++..|.+.+++.|++|+++++|++|.. ++ +..+ .+.+.++. ++++ +.||+|+|+|+.
T Consensus 212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~--~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLR--ED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4567788999999999999999999999999987 63 3333 33444443 5889 999999999985
No 124
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=2.7e-10 Score=112.35 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=98.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHH-HHHHHHHHhC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCL-LWEQAQSEIG 83 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 83 (413)
+..+||+|||+|.||++||+.+++.|.+|+||||....++ .+....+.+....... . ..+.+ .+...... +
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g--~t~~a~Ggi~~~~~~~--~---~ds~~~~~~dt~~~-g 81 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS--HTVAAQGGIGASLGNM--S---EDNWHYHFYDTIKG-S 81 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhccCCcccccccc--c---ccChhHhHHHHHHh-c
Confidence 3468999999999999999999999999999999866543 2222222221111100 0 00000 11111111 0
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccC----CCCeEEEEecCCceeChHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEI----PENWVGVATELGGVIKPTKAVSM 158 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.. ......+. .-.+...+.++++..+|+++.......+ ...+.+ -.. .......+.. --....+...
T Consensus 82 ~~-~~d~~~v~---~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~s~~~~~~~~~r~~~~~---~~tG~~l~~~ 153 (591)
T PRK07057 82 DW-LGDQDAIE---FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGG-HTANYGEKPVQRACAAA---DRTGHALLHT 153 (591)
T ss_pred CC-CCCHHHHH---HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCC-ccccccCCccceeeecC---CCChHHHHHH
Confidence 00 00000000 0001113345556667776532111000 000111 000 0000111111 1123567888
Q ss_pred HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
|.+.+.+.|++++.++.++++.. ++++....+. ..+|+ .+.++.||+|||+++.
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIR--DADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEE--cCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 88888889999999999999987 5333344443 33554 6789999999999764
No 125
>PLN02612 phytoene desaturase
Probab=99.28 E-value=8e-09 Score=101.52 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+++.|.+.+++.|++|+++++|++|.. ++++..+.+++.+|+++++|+||+|+....
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVVEGDVYVSATPVDI 366 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEEECCEEEECCCHHH
Confidence 56888888888889999999999999987 643345567777888899999999997643
No 126
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=6.6e-11 Score=117.36 Aligned_cols=185 Identities=14% Similarity=0.115 Sum_probs=97.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHH
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSE 81 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~ 81 (413)
..+||+|||+|+||++||+.+++.|.+|+||||....++ +|....|.+..... ....... +.+..+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~ds~~~~-------~~D~~~~ 77 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMGNVNPKDNWQVH-------FRDTMRG 77 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeeccCCCCCCCHHHH-------HHHHHHH
Confidence 468999999999999999999999999999999876543 22222222221111 1111111 1111111
Q ss_pred hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088 82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ 160 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
-.. ......+.. -.+.....+.++..+|+++.......+. ..++. .......+.. .-....++..|.
T Consensus 78 g~~--l~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~---~~tG~~i~~~L~ 145 (626)
T PRK07803 78 GKF--LNNWRMAEL---HAKEAPDRVWELETYGALFDRTKDGRISQRNFGG----HTYPRLAHVG---DRTGLELIRTLQ 145 (626)
T ss_pred hcc--CCcHHHHHH---HHHHhHHHHHHHHHCCCceEecCCCceeeeecCC----cccCeEEecC---CCcHHHHHHHHH
Confidence 000 000000000 0001123344566677765432111110 00111 0000111111 112356778888
Q ss_pred HHHHHC--------C-----CEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088 161 TLAIKN--------G-----AVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 161 ~~~~~~--------G-----v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.+++. | +++++++.|+++.. ++ +....+ ...+|+ .+.|+.||+|||++..
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 146 QKIVSLQQEDHAELGDYEARIKVFAECTITELLK--DG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred HHHHhhhccccccccCCcCceEEEeCCEEEEEEE--EC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 877766 6 99999999999987 63 233322 234554 6899999999998653
No 127
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.28 E-value=3.4e-09 Score=102.59 Aligned_cols=47 Identities=32% Similarity=0.389 Sum_probs=41.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcccCCCc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~~~~~ 53 (413)
+.||+|||||++|+++|++|+++ |++|+|+|+++..||+..+....+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g 52 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDG 52 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCC
Confidence 36899999999999999999998 999999999999998877654433
No 128
>PLN02815 L-aspartate oxidase
Probab=99.28 E-value=1.6e-10 Score=113.24 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=97.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
..+||+|||+|.||++||+.+++.| +|+||||....++.+. ...+++............ ++.+.... +..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~-~a~Ggi~a~~~~~Ds~e~-------~~~d~~~~-g~~ 97 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTN-YAQGGVSAVLDPSDSVES-------HMRDTIVA-GAF 97 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHH-HhhcccccCCCCCCCHHH-------HHHHHHHh-ccC
Confidence 4589999999999999999999999 9999999987654221 122222111111111111 11121111 000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
......+ ..-.+...+.++++..+|+++..-....+ ...... .......+. +-.....+...|.+.++
T Consensus 98 -~~d~~lv---~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg----~s~~R~~~~---~d~tG~~i~~~L~~~~~ 166 (594)
T PLN02815 98 -LCDEETV---RVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGG----HSHHRIVHA---ADMTGREIERALLEAVK 166 (594)
T ss_pred -CCcHHHH---HHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCC----CccCceeec---CCCCHHHHHHHHHHHHH
Confidence 0000000 00001113445666677776532110000 000110 000011111 11133567788888887
Q ss_pred HC-CCEEEcCceEEEEEEecccCCC---eEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 165 KN-GAVLRDNMEVKTVLKVKDAVKG---GVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~-Gv~i~~~~~V~~i~~~~~~~~~---~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+. |+++++++.+++|.. +++++ ++.+. ..+|+ .+.|+.||+|||++..
T Consensus 167 ~~~~i~i~~~~~~~~Li~--~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLT--SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeee--ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 65 899999999999987 53222 34443 34564 6789999999998764
No 129
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.28 E-value=3.9e-09 Score=101.66 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=37.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~ 49 (413)
+|+|||||++|+++|++|+++|++|+|+|++...||...+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~ 41 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSW 41 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeee
Confidence 58999999999999999999999999999999988776654
No 130
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.27 E-value=2.9e-10 Score=111.43 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=44.6
Q ss_pred eeChHHHHHHHHHHHHHCCC-EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 149 VIKPTKAVSMFQTLAIKNGA-VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv-~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.-..+.+.|.+.+ +. .++++++|++++. + ++.+.+.+.+|+++++|.||.|.|.+|.
T Consensus 190 ~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~--~--~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 190 VISRMTLQQILARAV---GEDVIRNESNVVDFED--S--GDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEE--e--CCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 344456666665433 33 3678899999987 6 4678888888888999999999999984
No 131
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.27 E-value=1.3e-10 Score=113.40 Aligned_cols=186 Identities=14% Similarity=0.075 Sum_probs=96.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 84 (413)
+..+||+|||+|+||++||+.++ .|.+|+||||....++. +....+++........... ..+.++.+....
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~-s~~a~Ggi~a~~~~~ds~e-------~~~~d~~~~g~~ 77 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA-SDWAQGGIAAAIAPDDSPK-------LHYEDTLKAGAG 77 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc-hhhhcccceecccCCCCHH-------HHHHHHHHhcCC
Confidence 45689999999999999999996 49999999999876432 2222222221111111111 112222111100
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
. .....+ ..-.+.....++++..+|+++...........+.. .......+... -....+...|.+.++
T Consensus 78 ~--~d~~lv---~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g----~s~~r~~~~~d---~~G~~i~~~L~~~~~ 145 (553)
T PRK07395 78 L--CDPEAV---RFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA----HSRPRVLHAAD---TTGRAIVTTLTEQVL 145 (553)
T ss_pred C--CCHHHH---HHHHHHHHHHHHHHHhcCCeeecCCCceeeecccc----cccCeEEEeCC---CChHHHHHHHHHHHh
Confidence 0 000000 00001123455666677776532110000000011 00111111111 023567788888877
Q ss_pred HC-CCEEEcCceEEEEEEecccC-CCeEEEEc-CCCc--EEEcCEEEEcCCCCh
Q 015088 165 KN-GAVLRDNMEVKTVLKVKDAV-KGGVTVVT-SNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 165 ~~-Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~-~~g~--~i~ad~VV~A~G~~s 213 (413)
+. |+++++++.|+++.. +++ +..+.+.. .+|+ .+.|+.||+|||++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 146 QRPNIEIISQALALSLWL--EPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred hcCCcEEEECcChhhhee--cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 65 999999999999987 531 23333332 3454 478999999999964
No 132
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.27 E-value=1e-10 Score=111.53 Aligned_cols=67 Identities=22% Similarity=0.155 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHCCCE--EEcCceEEEEEEecccCCCeEEEEcCCC--c--EEEcCEEEEcCCCChHHhhhhhcC
Q 015088 152 PTKAVSMFQTLAIKNGAV--LRDNMEVKTVLKVKDAVKGGVTVVTSNG--E--KFWGKKCVVTAGAWVGKLVKRITG 222 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~--~i~ad~VV~A~G~~s~~l~~~~~g 222 (413)
...+.+.|...++..|+. |+++++|+++.. . ++.|.|++.++ . +..+|.||+|+|.++.+..+.+.|
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~--~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEP--V--DGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEee--c--CCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCC
Confidence 367888999999998987 899999999988 6 46788877532 2 457899999999876554444433
No 133
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.27 E-value=2.4e-10 Score=112.59 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=96.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
..+||+|||+|+||++||+.+++. |.+|+||||....++ ++....+.+..........+ ..+....+. +
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~ds~e------~~~~d~~~~-g 73 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS--HTVAAEGGSAAVAQDHDSFD------YHFHDTVAG-G 73 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--ChhhccchhhhhcCCCCCHH------HHHHHHHHh-c
Confidence 468999999999999999999987 479999999876543 22222222211111100000 111111111 0
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
.. ..+...+. .-.+.....++++..+|+++..-....+ ...++. .......+... -....+...|.+.
T Consensus 74 ~~-~~d~~~v~---~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~ 142 (582)
T PRK09231 74 DW-LCEQDVVE---YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG----MKIERTWFAAD---KTGFHMLHTLFQT 142 (582)
T ss_pred cc-CCCHHHHH---HHHHHHHHHHHHHHHcCCCcccCCCCceeeecccc----ccCCeeEecCC---CcHHHHHHHHHHH
Confidence 00 00000000 0001113455666778877542111111 011111 00011111111 0134577777777
Q ss_pred HHHC-CCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088 163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.+. +++++.++.++++.. +++ .... +...+|+ .+.|+.||+|+|+++.
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILV--DDG-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEE--eCC-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 7665 899999999999987 632 2222 3345664 6899999999999774
No 134
>PRK07236 hypothetical protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=109.36 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.|.+.+ .+++++++++|++++. + ++.+.+...+|+++++|.||.|.|.+|.
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQ--D--GDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 3444444332 3578999999999988 6 4568888888888999999999999884
No 135
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.26 E-value=2e-09 Score=100.42 Aligned_cols=48 Identities=29% Similarity=0.344 Sum_probs=41.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceee
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIR 56 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~ 56 (413)
.|+|||||++||++||+|.+++ .+|+|+|+++..||...|....+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~ 51 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLF 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEE
Confidence 5999999999999999999999 99999999999988877765555443
No 136
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.26 E-value=1.6e-10 Score=112.18 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=95.8
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
.+.++||+|||+|+||++||+.++ +.+|+||||.....+..+....+++........... ..+.++.+...
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~~~ 76 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPA-------LHAADTLAAGA 76 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHH-------HHHHHHHHhhC
Confidence 356799999999999999999996 579999999886322222222222211111111111 11112211100
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
.. .+...+ ..-.+...+.++++.++|+++..-...... ..... .......+.. +.-.+..+...|.+.
T Consensus 77 g~--~d~~~v---~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~----~~~~r~~~~~--g~~~G~~l~~~L~~~ 145 (513)
T PRK07512 77 GL--CDPAVA---ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAA----HSRRRIVHVG--GDGAGAAIMRALIAA 145 (513)
T ss_pred CC--CCHHHH---HHHHHHHHHHHHHHHHhCCccccCCCCccccccccC----ccCCcEEEcC--CCCCHHHHHHHHHHH
Confidence 00 000000 000011234556667777765321100000 00000 0000111111 111345788888888
Q ss_pred HHHC-CCEEEcCceEEEEEEecccCCCeEEEEc--CCCc-EEEcCEEEEcCCCCh
Q 015088 163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE-KFWGKKCVVTAGAWV 213 (413)
Q Consensus 163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~-~i~ad~VV~A~G~~s 213 (413)
+++. |++++.++.|+++.. ++ +..+.+.. .++. .+.|+.||+|||++.
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLV--DD-GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHhCCCCEEEECcChhheee--cC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 8775 899999999999876 53 33344433 2332 589999999999975
No 137
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.26 E-value=2e-09 Score=101.46 Aligned_cols=59 Identities=12% Similarity=-0.063 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~VV~A~G~~s~ 214 (413)
..+.+.|.+.+.+.|++++++++++.+.. .+ +..+.|... +|+ ++++|.||.|.|.+|.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~--~~-~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHD--LA-GDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEe--cC-CCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 45667787878778999999998888754 32 233344443 564 6899999999999884
No 138
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=2.4e-10 Score=112.66 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=96.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHHh
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSEI 82 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 82 (413)
++||+|||+|+||++||+.+++.|.+|+||||....++ ++....+.+..... ......+ +....+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~Ds~e~~-------~~d~~~~- 72 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS--HSVCAQGGINGAVNTKGEGDSPWIH-------FDDTVYG- 72 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC--cccccCCCeEEecCcCCCCCCHHHH-------HHHHHHh-
Confidence 57999999999999999999999999999999987543 22222222221111 1111111 1111111
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT 161 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (413)
+.. ......+.. -.+...+.++++..+|+++.......+ ...+.. .......+ .+......+...|.+
T Consensus 73 g~~-~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~---~~~~tG~~i~~~L~~ 141 (589)
T PRK08641 73 GDF-LANQPPVKA---MCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGG----TLHHRTAF---AGATTGQQLLYALDE 141 (589)
T ss_pred cCC-cCCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCC----eecccccc---cCCCcHHHHHHHHHH
Confidence 000 000000000 001112445666667776532110000 000010 00000011 111234567788887
Q ss_pred HHHHCC----CEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088 162 LAIKNG----AVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 162 ~~~~~G----v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.+++.+ ++++.++.++++.. ++++.++.|.. .+++ .+.|+.||+|||++..
T Consensus 142 ~~~~~~~~~~i~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 142 QVRRYEVAGLVTKYEGWEFLGAVL--DDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHhhhccCCcEEEeeEEEEEEEE--CCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 776543 88999999999887 53334444432 2344 5789999999999774
No 139
>PRK07208 hypothetical protein; Provisional
Probab=99.25 E-value=4.1e-10 Score=109.40 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=40.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~ 51 (413)
++.||+|||||++|+++|++|+++|++|+|+|+++..||...+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~ 48 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY 48 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc
Confidence 4679999999999999999999999999999999999887665443
No 140
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.25 E-value=1.9e-09 Score=96.79 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
+.+|+|||||++|+++|..|.++|++|+|+|++..+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 358999999999999999999999999999998776433
No 141
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.25 E-value=3e-10 Score=109.23 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=94.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCCee
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
+||+|||+|++|++||+.+++.|.+|+||||.... +++....+.+..... ...... .+.+..+... .
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~---~~s~~a~ggi~~~~~~~ds~e~-------~~~d~~~~~~-~- 69 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK---SNSYLAQAGIAFPILEGDSIRA-------HVLDTIRAGK-Y- 69 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC---CCcHHHcCCcccccCCCCcHHH-------HHHHHHHHhc-C-
Confidence 69999999999999999999999999999998532 122111121111110 010011 1111111100 0
Q ss_pred EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN 166 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 166 (413)
......+. .-.+...+.++++..+|+++.... ..+. ..+...+... ......+.+.|.+.+++.
T Consensus 70 ~~d~~~v~---~~~~~~~~~i~~L~~~Gv~f~~~~------~~~g-----~~~~r~~~~~--~~~G~~i~~~L~~~~~~~ 133 (466)
T PRK08401 70 INDEEVVW---NVISKSSEAYDFLTSLGLEFEGNE------LEGG-----HSFPRVFTIK--NETGKHIIKILYKHAREL 133 (466)
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHcCCCcccCC------CcCC-----ccCCeEEECC--CCchHHHHHHHHHHHHhc
Confidence 00000000 000111344556667777643210 0111 0011111111 112356888899999999
Q ss_pred CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH
Q 015088 167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK 215 (413)
Q Consensus 167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~ 215 (413)
|++++.. .++++.. ++ +..+.+.+ +++.+.++.||+|||+++..
T Consensus 134 gv~i~~~-~v~~l~~--~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 134 GVNFIRG-FAEELAI--KN-GKAYGVFL-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred CCEEEEe-EeEEEEe--eC-CEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence 9999865 7888876 52 24444555 45569999999999998864
No 142
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.25 E-value=3.5e-10 Score=111.09 Aligned_cols=186 Identities=13% Similarity=0.074 Sum_probs=97.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
.++||+|||+|+||++||+.+++. |.+|+||||....++. +....+.+..........+ .++.+..+. +
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~--s~~a~Gg~~~~~~~~ds~e------~~~~dt~~~-g 72 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH--TVAAEGGSAAVTGDDDSLD------EHFHDTVSG-G 72 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC--chhcCCchhhhcCCCCCHH------HHHHHHHHh-c
Confidence 368999999999999999999987 5899999999776432 2111122211111111000 111111111 1
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL 162 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (413)
.. ......+. .-.+...+.++++.++|+++.......+ ...++. .......+... -....+.+.|.+.
T Consensus 73 ~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~~~~---~~G~~i~~~L~~~ 141 (580)
T TIGR01176 73 DW-LCEQDVVE---YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG----MKKERTWFAAD---KTGFHMLHTLFQT 141 (580)
T ss_pred CC-cCcHHHHH---HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCC----ccCCeeeecCC---CCHHHHHHHHHHH
Confidence 00 00000000 0001113445566777776543211100 011111 00011111111 1235678888887
Q ss_pred HHHC-CCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088 163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+.+. +++++.++.++++.. ++ +.... +...+|+ .+.|+.||+|||+++.
T Consensus 142 ~~~~~~i~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 142 SLTYPQIMRYDEWFVTDLLV--DD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHhcCCCEEEeCeEEEEEEe--eC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 7764 899999999999987 63 23332 2334664 6889999999999874
No 143
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.25 E-value=1.1e-10 Score=111.54 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=99.1
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCeeEEee
Q 015088 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKVYFKA 90 (413)
Q Consensus 12 IIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (413)
|||+|++|++||++++++|.+|+||||.......+.+.. ++.+...... ..+.........+++++.+..+.......
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999999999999875311122211 1111111100 00000001112344444433221100000
Q ss_pred ceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEE
Q 015088 91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVL 170 (413)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i 170 (413)
... -.+...+..+++.++|+++...... ..+. .....+... ....+++.|.+.+++.|++|
T Consensus 80 ~~~-----~~~~s~~~i~wl~~~Gv~f~~~~~g----~~~~------~~~~~~~~~----~g~~l~~~L~~~a~~~Gv~i 140 (432)
T TIGR02485 80 SRL-----GIGRGSRDLRWAFAHGVHLQPPAAG----NLPY------SRRTAFLRG----GGKALTNALYSSAERLGVEI 140 (432)
T ss_pred HHH-----HHhcchhHHHHHHhCCceeeecCCC----Cccc------cCceeeecC----CHHHHHHHHHHHHHHcCCEE
Confidence 000 0011134556667777765422100 0010 001111111 23568889999999999999
Q ss_pred EcCceEEEEEEeccc-CCCeEEEEcC-CCcEEEcCEEEEcCCCChH--Hhhhh
Q 015088 171 RDNMEVKTVLKVKDA-VKGGVTVVTS-NGEKFWGKKCVVTAGAWVG--KLVKR 219 (413)
Q Consensus 171 ~~~~~V~~i~~~~~~-~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~--~l~~~ 219 (413)
+++++|++|.. ++ ++..+.+.+. ++.++.++.||+|+|++.. +++..
T Consensus 141 ~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 141 RYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred EeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 99999999987 52 2334445443 3347999999999998764 44443
No 144
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.25 E-value=8.8e-11 Score=113.93 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=95.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV 86 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (413)
.+||+|||+|.||++||+.+++ |.+|+||||....++. +....+++........... ..+..+.+....
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~-s~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~g~~-- 71 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN-SHLAQGGIAAAVATYDSPN-------DHFEDTLVAGCH-- 71 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC-chhcCccceecccCCCCHH-------HHHHHHHHhccC--
Confidence 6899999999999999999976 8999999999876432 2122222211111111111 111222111000
Q ss_pred EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088 87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK 165 (413)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (413)
..+...+ ..-.+.....++++.++|+++..-....+ ...... .......+ . .+...+..+.+.|.+.++
T Consensus 72 ~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~-~-~gd~~g~~i~~~L~~~~~- 141 (510)
T PRK08071 72 HNNERAV---RYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGA----HRKRRILH-A-GGDATGKNLLEHLLQELV- 141 (510)
T ss_pred cCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcC----ccCCeEEe-c-CCCCcHHHHHHHHHHHHh-
Confidence 0000000 00001113445566667776532110000 000000 00001111 1 122234567888888775
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEE--cCCCc--EEEcCEEEEcCCCChH
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
.|+++++++.|+++.. ++ +....+. ..+|+ .+.|+.||+|||+++.
T Consensus 142 ~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLII--EN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheee--cC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 6999999999999977 53 2333343 33443 6889999999999774
No 145
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.24 E-value=2e-10 Score=108.40 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+.+.+...|++++++++|.+|.. ++++..+.|++.+|++++|+.||.....+..
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 67889999999999999999999999987 6434567889999988999999987776643
No 146
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.23 E-value=1.8e-10 Score=106.50 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCC-hHHhhhhh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAW-VGKLVKRI 220 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~-s~~l~~~~ 220 (413)
.++.+.|.+.++++|++++.+++|.++.. ++ +....+.+.++ ..++||+||+|+|+| +..+.+.+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~--~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF--EG-NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe--eC-CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 67788999999999999999999999987 62 24455666665 369999999999999 88888776
No 147
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.23 E-value=6.3e-10 Score=107.45 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+.+|+++++|.||+|+|...+
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEG--G--DDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEE--e--CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 45677888888899999999999999987 5 3456676777778999999999998654
No 148
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.23 E-value=9.3e-12 Score=118.28 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeEE
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYF 88 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (413)
||||||||++|++||+.+++.|.+|+|||+...+||..++.+.... .. ..... ......+.++.+....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~-~~----~~~~~--~~~~gi~~e~~~~~~~---- 69 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPF-DG----NHDED--QVIGGIFREFLNRLRA---- 69 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EE-TT----EEHHH--HHHHHHHHHHHHST------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCCh-hh----cchhh--ccCCCHHHHHHHHHhh----
Confidence 8999999999999999999999999999999998775544332211 11 00001 1112222232222110
Q ss_pred eeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCC
Q 015088 89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGA 168 (413)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv 168 (413)
.+.. . .. . ...+ .....++|..+...+.+.+.+.|+
T Consensus 70 ------------------------~~~~----~-~~--~--------~~~~-----~~~~~~~~~~~~~~l~~~l~e~gv 105 (428)
T PF12831_consen 70 ------------------------RGGY----P-QE--D--------RYGW-----VSNVPFDPEVFKAVLDEMLAEAGV 105 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------hccc----c-cc--c--------cccc-----cccccccccccccccccccccccc
Confidence 0000 0 00 0 0000 000344566667777777888899
Q ss_pred EEEcCceEEEEEEecccCCCeEEEEc--CCCc-EEEcCEEEEcCCC
Q 015088 169 VLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE-KFWGKKCVVTAGA 211 (413)
Q Consensus 169 ~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~-~i~ad~VV~A~G~ 211 (413)
++++++.|.++.. ++ +..+.|.+ .+|. +++|+.||.|||-
T Consensus 106 ~v~~~t~v~~v~~--~~-~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 106 EVLLGTRVVDVIR--DG-GRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccc--cc-cccccccccccccccccccccccccccc
Confidence 9999999999988 73 24444444 3344 7999999999995
No 149
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.22 E-value=5e-09 Score=101.28 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=39.2
Q ss_pred cEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCcccCCCc
Q 015088 9 DVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~------g~~V~liE~~~~~gg~~~s~~~~~ 53 (413)
+|+|||||++|++||++|++. |++|+|+|+++..||+..|....+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g 53 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD 53 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC
Confidence 699999999999999999986 379999999999999877765433
No 150
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.22 E-value=9.4e-10 Score=107.56 Aligned_cols=186 Identities=14% Similarity=0.118 Sum_probs=96.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIG 83 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 83 (413)
+..+||+|||+|+||++||+.+++. .+|+||||....++ ++....+.+...... .... ..++.......
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~g~ 75 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETDSIE-------SHVEDTLIAGA 75 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCccHH-------HHHHHHHHHcc
Confidence 4568999999999999999999986 89999999887543 222222222211111 1111 11111111100
Q ss_pred CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHH----HH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088 84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR----QV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSM 158 (413)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
. ......+ ..-.+...+.++++..+|+++...... .. ...++. ......+... .-....+...
T Consensus 76 -~-~~d~~~v---~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg-----~~~~r~~~~~--~~~G~~i~~~ 143 (536)
T PRK09077 76 -G-LCDEDAV---RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGG-----HSHRRILHAA--DATGKAVQTT 143 (536)
T ss_pred -C-CCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCC-----ccCCceEecC--CCCHHHHHHH
Confidence 0 0000000 000011134456667777765332100 00 000110 0000111111 1123467777
Q ss_pred HHHHHHHC-CCEEEcCceEEEEEEeccc-----CCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088 159 FQTLAIKN-GAVLRDNMEVKTVLKVKDA-----VKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~~-Gv~i~~~~~V~~i~~~~~~-----~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~ 214 (413)
|.+.+.+. |+++++++.|+++.. ++ ++..+.+. . .+|+ .+.++.||+|+|+++.
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~--~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLIT--SDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeee--cccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 88777765 899999999999876 53 12334343 2 3454 6889999999999774
No 151
>PLN02576 protoporphyrinogen oxidase
Probab=99.21 E-value=6.4e-09 Score=101.51 Aligned_cols=49 Identities=39% Similarity=0.465 Sum_probs=43.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCcccCCCc
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg~~~s~~~~~ 53 (413)
..++||+|||||++||++|++|+++ |++|+|+|+++..||+..+....+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g 59 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG 59 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC
Confidence 3467999999999999999999999 999999999999999877765444
No 152
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.20 E-value=5.6e-10 Score=110.20 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=90.5
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
|+|||+|+||++||+.+++.|.+|+||||....++ +++....+.+.... ..... ...+..+.+.....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~-g~s~~a~Ggi~a~~~~~~~~ds~-------e~~~~d~~~~g~~~ 72 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR-AHSIAAQGGINGAVNTKGDGDSP-------WRHFDDTVKGGDFR 72 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC-ccchhhhhhhhhhcccCCCCCCH-------HHHHHHHHHhcCCC
Confidence 68999999999999999999999999999873322 22211111111100 01100 11122221110000
Q ss_pred eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
.....+. .-.......++++..+|+++........ ...++. .......+... -....+...|.+.++
T Consensus 73 --~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~~~~---~tG~~i~~~L~~~~~ 140 (603)
T TIGR01811 73 --ARESPVK---RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGG----VQVSRTAYARG---QTGQQLLLALDSALR 140 (603)
T ss_pred --CCHHHHH---HHHHHHHHHHHHHHHcCCEEEecCCCccccccccC----cccCcceecCC---CChhHHHHHHHHHHH
Confidence 0000000 0001113455666777776532110000 011111 00011111111 012345555555444
Q ss_pred H----CCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088 165 K----NGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~----~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~ 214 (413)
+ .|++++++++|++|.. ++++.++.|.. .+|+ .+.|+.||+|||+++.
T Consensus 141 ~~~~~~gV~i~~~t~v~~Li~--dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 141 RQIAAGLVEKYEGWEMLDIIV--VDGNRARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred hhhccCCcEEEeCcEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 3 4899999999999987 53334444442 2454 6889999999999753
No 153
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.20 E-value=3e-10 Score=103.37 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+...+.+.+++.|+++++ ++|+++.. . ++.+.+.+.+++++++|+||+|+|.+.
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDL--S--DRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEe--c--CCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 35666777778888999998 89999987 6 467788887777899999999999854
No 154
>PRK12839 hypothetical protein; Provisional
Probab=99.20 E-value=6.4e-10 Score=109.10 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=48.7
Q ss_pred eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEE--EcCCCc-EEE-cCEEEEcCCCChH
Q 015088 149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTV--VTSNGE-KFW-GKKCVVTAGAWVG 214 (413)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~-ad~VV~A~G~~s~ 214 (413)
.+++..++..|.+.+++.|++|+.++.|++|.. ++++.++.| ...+++ .+. ++.||+|+|+++.
T Consensus 210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~--~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTT--DKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 346788899999999999999999999999976 533344444 444555 344 4899999999885
No 155
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.19 E-value=3.3e-10 Score=108.94 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=52.5
Q ss_pred ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
+++|+..+...+.+.+++. +++++ ...|+++.. ++++..+.|.+.+|..+.|+.||+|+|.|.
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~--e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLIL--EDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--ecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 6889999999999999888 78887 557888866 433467788888888899999999999994
No 156
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.19 E-value=5.4e-10 Score=110.02 Aligned_cols=40 Identities=38% Similarity=0.497 Sum_probs=36.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
+.++||||||+|.+|+++|+.++++|.+|+||||....++
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 3579999999999999999999999999999999987654
No 157
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.18 E-value=8.4e-10 Score=106.37 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-----EEEcCEEEEcCCCCh
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-----KFWGKKCVVTAGAWV 213 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~VV~A~G~~s 213 (413)
+..+.+.+.+.+++.|++|+++++|++|.. .+++..+.+++.+|+ ++.||.||+|+.+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 467788899999889999999999999986 533345556665543 689999999998743
No 158
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.18 E-value=7.8e-10 Score=100.79 Aligned_cols=48 Identities=42% Similarity=0.580 Sum_probs=43.1
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~ 51 (413)
....+||||||+|++||++|++|.+.|++|+|+|.+++.||+..+...
T Consensus 4 p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 4 PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 456799999999999999999999999999999999999988766544
No 159
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.16 E-value=3e-10 Score=95.70 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=86.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeEE
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYF 88 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (413)
+|+|||+||+|++||+.|++.|.+|+|+||+.-.||+.+|....+.- +
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~--------------------------------~ 50 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGR--------------------------------F 50 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCcc--------------------------------c
Confidence 69999999999999999999999999999998887776664332211 0
Q ss_pred eeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCC
Q 015088 89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGA 168 (413)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv 168 (413)
+.|.-.+. ...+.+.+..+.+.+.|+- ...........-.+ .. +.... .+ ++-...+ ..|.+. .....
T Consensus 51 DhGAqYfk-~~~~~F~~~Ve~~~~~glV-~~W~~~~~~~~~~~-~~-~~~d~---~p---yvg~pgm-salak~-LAtdL 118 (331)
T COG3380 51 DHGAQYFK-PRDELFLRAVEALRDDGLV-DVWTPAVWTFTGDG-SP-PRGDE---DP---YVGEPGM-SALAKF-LATDL 118 (331)
T ss_pred cccceeec-CCchHHHHHHHHHHhCCce-eeccccccccccCC-CC-CCCCC---Cc---cccCcch-HHHHHH-Hhccc
Confidence 01111111 1122233444444444432 11110000000000 00 00000 00 1111111 223332 23357
Q ss_pred EEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCC
Q 015088 169 VLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGA 211 (413)
Q Consensus 169 ~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~ 211 (413)
+|+++++|+.+.. . ++.|++.+++|. ..++|.||+|.-.
T Consensus 119 ~V~~~~rVt~v~~--~--~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 119 TVVLETRVTEVAR--T--DNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred hhhhhhhhhhhee--c--CCeeEEEecCCCcccccceEEEecCC
Confidence 8889999999998 7 689999996665 6789999999875
No 160
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.16 E-value=1.9e-09 Score=103.05 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~ 49 (413)
..+|+|||||++|++||++|.+. |.+|+|+|+.+..||...+.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~ 68 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGA 68 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCc
Confidence 47899999999999999999995 68999999999988876543
No 161
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=5.6e-10 Score=109.46 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcC-EEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGK-KCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad-~VV~A~G~~s~ 214 (413)
..+...|.+.+++.|++++++++|++|.. ++ +.++.|.. .+|+ ++.++ .||+|+|++..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~--~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIV--ED-GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eC-CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 56777888889999999999999999987 63 34444432 2343 57885 69999999875
No 162
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.15 E-value=2.9e-10 Score=103.88 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=49.0
Q ss_pred ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088 148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA 211 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~ 211 (413)
.++|-..+.+.+.+.+++. +++++ +++|++|.. ++ +..+.|.+.+|+.+.+|.||+|||.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~-~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV--EN-GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE--CT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe--cC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence 4677789999999999884 78887 789999987 63 4788899999999999999999999
No 163
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=6.3e-10 Score=109.21 Aligned_cols=44 Identities=34% Similarity=0.525 Sum_probs=39.6
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
|.|.+.++||+|||+|++|+++|+.++++|.+|+||||....|+
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 56666789999999999999999999999999999999877654
No 164
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=2.4e-09 Score=105.25 Aligned_cols=39 Identities=49% Similarity=0.612 Sum_probs=35.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC--CCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD--FLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~--~~gg 44 (413)
.++||+|||+|.+|++||+.+++.|.+|+||||.. ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 57999999999999999999999999999999998 4443
No 165
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=2.1e-09 Score=105.27 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEc-CEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~VV~A~G~~s~ 214 (413)
..+...|.+.+++.|++|+++++|++|.. ++ +.++.|.. .+|+ .+.+ +.||+|||++..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD--DG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cC-CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 56778888889999999999999999987 63 34444432 2343 4666 579999999875
No 166
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.14 E-value=1.9e-09 Score=105.96 Aligned_cols=177 Identities=16% Similarity=0.228 Sum_probs=91.9
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCcEEEEcccCCCCCCCcccCCCce--eecccCCCChHHHHHHH-HHHHHHHHHH
Q 015088 9 DVIVVGAGIMGSSAAYQLA----KRGQKTLLLEQFDFLHHRGSSHGESRT--IRATYPEDYYHPMVLES-CLLWEQAQSE 81 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~----~~g~~V~liE~~~~~gg~~~s~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 81 (413)
||+|||||+||++||+.++ +.|.+|+||||....++ + +. ..|. +........ . ..+ ...++.....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s-~-s~-A~G~~gi~~~~~~~~--g--~Ds~e~~~~d~~~~ 73 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERS-G-AV-AQGLSAINTYLGTRF--G--ENNAEDYVRYVRTD 73 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCC-C-cc-ccccchhhhhhhccc--C--CCCHHHHHHHHHHh
Confidence 8999999999999999998 67999999999876422 2 22 1121 111111000 0 000 1111111111
Q ss_pred hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccC-HHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088 82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD-CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ 160 (413)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (413)
. .. ......+ ..-.+.....++++..+|+++.... ..... + .... .. ......+.+.+.
T Consensus 74 ~-~g-l~d~~lV---~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~-~-------~g~~---~~----~~gG~~~~r~l~ 133 (614)
T TIGR02061 74 L-MG-LVREDLI---FDMARHVDDSVHLFEEWGLPLWIKPEDGKYV-R-------EGRW---QI----MIHGESYKPIVA 133 (614)
T ss_pred c-CC-CCcHHHH---HHHHHHHHHHHHHHHHcCCCceecCCCCccc-c-------CCCc---cc----CcCchhHHHHHH
Confidence 0 00 0000000 0000112355666667777654210 00000 0 0000 00 001234555666
Q ss_pred HHHHHCCCEEEcCceEEEEEEecccC--CCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 161 TLAIKNGAVLRDNMEVKTVLKVKDAV--KGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
..+++.+++++.++.|+++.. +++ +.++.|. ..+|+ .+.|+.||+|||+|..
T Consensus 134 ~~l~~~~~~i~~~~~v~~Ll~--d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 134 EAAKNALGDIFERIFIVKLLL--DKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHHHhCCCeEEcccEEEEEEe--cCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 666777789999999999987 632 2343433 24554 6789999999999875
No 167
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.14 E-value=6.8e-10 Score=117.40 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=98.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHH-HHHHHHHHH-HHHHHh
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM-VLESCLLWE-QAQSEI 82 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~~~~~ 82 (413)
+..+||||||+|.||++||+.+++.|.+|+||||....||... ...+.+... ........ ...+.+.+. .....
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~--~s~ggi~~~-~t~~q~~~gi~D~~~~~~~d~~~~- 482 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA--KATSGINGW-GTRAQAKQDVLDGGKFFERDTHLS- 482 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh--hcccccccC-CchhhhhhcccccHHHHHHHHHHh-
Confidence 3469999999999999999999999999999999987754322 111111111 00000000 001111111 11110
Q ss_pred CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecC--Ccee--ChHHHHHH
Q 015088 83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATEL--GGVI--KPTKAVSM 158 (413)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~ 158 (413)
+...... .. +...-.+...+.++|+.++|+++..... ... . ........+. .+.. ....+.+.
T Consensus 483 ~~~~~~d-~~--lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg-~---~~~r~~~~~~~~~g~~~~~G~~i~~~ 549 (1167)
T PTZ00306 483 GKGGHCD-PG--LVKTLSVKSADAISWLSSLGVPLTVLSQ------LGG-A---SRKRCHRAPDKKDGTPVPIGFTIMRT 549 (1167)
T ss_pred ccCCCCC-HH--HHHHHHHhhHHHHHHHHHcCCCceeeec------cCC-C---CCCceeecCcccCCCcCCcHHHHHHH
Confidence 0000000 00 0000001113455667777776543210 111 0 0001111111 1111 12456677
Q ss_pred HHHHHHH---CCCEEEcCceEEEEEEecccC----C----CeEEEE--cC---CCc--EEEcCEEEEcCCCChH
Q 015088 159 FQTLAIK---NGAVLRDNMEVKTVLKVKDAV----K----GGVTVV--TS---NGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 159 l~~~~~~---~Gv~i~~~~~V~~i~~~~~~~----~----~~~~v~--~~---~g~--~i~ad~VV~A~G~~s~ 214 (413)
|.+.+++ .|++|+++++++++.. +++ + .++.|. .. +|+ .+.|+.||+|||++..
T Consensus 550 l~~~~~~~~~~gv~i~~~t~~~~LI~--d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 550 LEDHIRTKLSGRVTIMTETTVTSLLS--ESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred HHHHHHhhccCCcEEEECCEEEEEEe--cCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 7777665 4999999999999987 631 1 334443 32 554 6889999999999885
No 168
>PRK06116 glutathione reductase; Validated
Probab=99.13 E-value=5e-09 Score=100.80 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+.+.+.+.+++.|++++++++|.+++. +++ +.+.+.+.+|+++.+|.||+|+|...
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~-g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEK--NAD-GSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEE--cCC-ceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 45677788888999999999999999987 522 33667777888899999999999754
No 169
>PLN02487 zeta-carotene desaturase
Probab=99.13 E-value=7.4e-08 Score=93.85 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCC-C---eEEEEc---CCCcEEEcCEEEEcCCCCh-HHhhh
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK-G---GVTVVT---SNGEKFWGKKCVVTAGAWV-GKLVK 218 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~---~~~v~~---~~g~~i~ad~VV~A~G~~s-~~l~~ 218 (413)
.+.+.+.+.++++|++|++++.|.+|.. ++++ + .+.|++ .+++.+.+|.||+|++.+. ..|++
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~--~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp 366 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILY--DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP 366 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEE--ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence 4788899999999999999999999988 6321 2 345565 3344688999999999865 34443
No 170
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.2e-10 Score=98.83 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHh
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l 216 (413)
...+.+.+.+.++..|+++.. ..|.+++. . ++.+.|+|.+++ ++|+.||+|+|.....+
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~--~--~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVEL--E--GGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEee--c--CceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 357778888888888999986 77888877 5 228999999998 99999999999866433
No 171
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.12 E-value=9e-10 Score=104.63 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCC--CEEEcCceEEEEEEecccCCCeEEEEcCCCcE--EEcCEEEEcCCCChHHhhhhhcCC
Q 015088 156 VSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEK--FWGKKCVVTAGAWVGKLVKRITGL 223 (413)
Q Consensus 156 ~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~--i~ad~VV~A~G~~s~~l~~~~~g~ 223 (413)
...+...+++.+ .++.+++.|..+.. +++++.|.|+++++.+ +++|.||+|||.++.+..+.+.|.
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~ 154 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL 154 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEe--cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc
Confidence 344455555554 45566677776666 5445799999988874 459999999999888777776554
No 172
>PTZ00367 squalene epoxidase; Provisional
Probab=99.12 E-value=3.1e-08 Score=96.62 Aligned_cols=35 Identities=43% Similarity=0.626 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 173
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.11 E-value=3.5e-09 Score=103.08 Aligned_cols=44 Identities=41% Similarity=0.482 Sum_probs=40.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~ 51 (413)
.||||||||++|++||..|+++|++|+|+|++..+||+..+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~ 45 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR 45 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc
Confidence 58999999999999999999999999999999999888776543
No 174
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.10 E-value=7.8e-10 Score=105.51 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=50.8
Q ss_pred CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
+.++|-..+-+.|.+.+++.|++++.+ +|+++.. ++++....|++.+|++++||.||.|+|..+
T Consensus 148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~--~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVEL--DEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE---TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEE--cCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 467888999999999999999999976 5888877 644456789999999999999999999755
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.10 E-value=1.2e-09 Score=107.21 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+.+.+++.|++++ +++|+++.. + +..+.+.+.++. +.++.||+|+|++..
T Consensus 60 ~~l~~~l~~~~~~~gv~~~-~~~V~~i~~--~--~~~~~V~~~~g~-~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 60 PELMQEMRQQAQDFGVKFL-QAEVLDVDF--D--GDIKTIKTARGD-YKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHHHHHHHHHcCCEEe-ccEEEEEEe--c--CCEEEEEecCCE-EEEeEEEECCCCccC
Confidence 4566677777888899986 788988877 5 356677777775 899999999998653
No 176
>PRK06370 mercuric reductase; Validated
Probab=99.10 E-value=2.4e-09 Score=103.32 Aligned_cols=40 Identities=35% Similarity=0.486 Sum_probs=35.4
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
|..+|||+|||||++|+++|.+|+++|++|+|||+...+|
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG 41 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGG 41 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCC
Confidence 3346999999999999999999999999999999975543
No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.09 E-value=3.9e-09 Score=101.22 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~v~v~~~~g~-i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISH--H--ENQVQVHSEHAQ-LAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEEcCCe-EEeCEEEEeecCCcC
Confidence 56677888889999999999999999987 6 345667666665 899999999998764
No 178
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.09 E-value=2.9e-09 Score=102.11 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
+|||+|||||++|+++|..++++|++|+|+|+.. .||
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG 38 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGG 38 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCc
Confidence 5899999999999999999999999999999964 443
No 179
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=2.2e-09 Score=105.84 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=47.1
Q ss_pred eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEc-CEEEEcCCCChH
Q 015088 150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWG-KKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~a-d~VV~A~G~~s~ 214 (413)
.++..++..|.+.+++.|++++++++|+++.. ++ +....|... +++ .+.+ +.||+|+|++..
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLET--DH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 35667889999999999999999999999986 52 344444432 343 5776 689999999875
No 180
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.08 E-value=4.1e-09 Score=101.64 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=35.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
+.+|||+|||||++|+.+|..|+++|++|+|||+.+..||
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG 41 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 3469999999999999999999999999999999755544
No 181
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.08 E-value=6.5e-09 Score=107.60 Aligned_cols=37 Identities=38% Similarity=0.555 Sum_probs=34.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.++||+|||+|.+|+++|+.+++.|.+|+||||....
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~ 48 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR 48 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4689999999999999999999999999999998763
No 182
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.08 E-value=7.3e-10 Score=107.22 Aligned_cols=192 Identities=20% Similarity=0.184 Sum_probs=103.0
Q ss_pred CCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC--hHHHHHHHHHHHHHHHH
Q 015088 3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESCLLWEQAQS 80 (413)
Q Consensus 3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~ 80 (413)
++..++||+|||||.||+.||..++++|.+|+|+||....+ +++....+.+........ ... .-..++....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r--g~t~~a~gG~~a~~~~~~~~~~d---s~e~~~~dtvk 76 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR--GHTVAAQGGINAALGNTVDVEGD---SPELHFYDTVK 76 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC--CchhhhcccccccccCcccccCC---CHHHHHHHHHh
Confidence 34567999999999999999999999999999999988775 333222222222111100 000 00011111111
Q ss_pred HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCc-cccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPH-QVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
.. +...+...+.. -.+...+...++..+|.++ +..+.....+.++. ...+ ...+ .+.-....++..|
T Consensus 77 g~--d~l~dqd~i~~---~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg-~~~~---rt~~---~~~~tG~~ll~~L 144 (562)
T COG1053 77 GG--DGLGDQDAVEA---FADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG-HSKP---RTCF---AADKTGHELLHTL 144 (562)
T ss_pred cc--CCcCCHHHHHH---HHHhhHHHHHHHHHhCCCcccCCCccccccccCC-cCCC---ccee---cCCCCcHHHHHHH
Confidence 10 00000000000 0001134455666677664 22332223333333 1111 1111 1222235677888
Q ss_pred HHHHHH-CCCEEEcCceEEEEEEecccCCC---eEEEEcCCCc--EEEcCEEEEcCCCCh
Q 015088 160 QTLAIK-NGAVLRDNMEVKTVLKVKDAVKG---GVTVVTSNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 160 ~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~---~~~v~~~~g~--~i~ad~VV~A~G~~s 213 (413)
.+++.+ .+.+++.+..++++.. ++++. .+.+...+|+ .+.++.||+|||+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 145 YEQLLKFSGIEIFDEYFVLDLLV--DDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHhhcchhhhhhhhhhhee--cCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 888877 5778999999999987 53332 2333455665 677899999999866
No 183
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.07 E-value=2.7e-09 Score=104.18 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+.+.+.+.+++.|++++++++|.++.. . ++.+.+.+.+|+++++|.||+|+|...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~--~--~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEP--A--AGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 56777888888889999999999999988 6 357788888887899999999999854
No 184
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.07 E-value=1.2e-09 Score=97.38 Aligned_cols=171 Identities=20% Similarity=0.264 Sum_probs=101.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHH
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQ 79 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~------g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 79 (413)
..+||+|||||+||++||.+|.+. .++|+|+||....|+..-|.. ++.+.. ..+-+..|++.-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa---viep~a--------ldEL~P~wke~~ 143 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA---VIEPGA--------LDELLPDWKEDG 143 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce---eeccch--------hhhhCcchhhcC
Confidence 468999999999999999999763 469999999988876544432 111110 001111111111
Q ss_pred HHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088 80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF 159 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (413)
....... .... +.++..+ .+ +.++.. ..+-.....++.-..++++|
T Consensus 144 apl~t~v--T~d~------------------------~~fLt~~---~~----i~vPv~-~pm~NhGNYvv~L~~~v~wL 189 (621)
T KOG2415|consen 144 APLNTPV--TSDK------------------------FKFLTGK---GR----ISVPVP-SPMDNHGNYVVSLGQLVRWL 189 (621)
T ss_pred Ccccccc--cccc------------------------eeeeccC---ce----eecCCC-cccccCCcEEEEHHHHHHHH
Confidence 1000000 0000 0111100 00 111111 11222234566778999999
Q ss_pred HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC------C---------cEEEcCEEEEcCCCCh---HHhhhhhc
Q 015088 160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN------G---------EKFWGKKCVVTAGAWV---GKLVKRIT 221 (413)
Q Consensus 160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~------g---------~~i~ad~VV~A~G~~s---~~l~~~~~ 221 (413)
-+++++.|++|.-+..+.++.. ++++.+..+.|+| | -++.|+.-|+|-|... .+++++.
T Consensus 190 g~kAEe~GvEiyPg~aaSevly--~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf- 266 (621)
T KOG2415|consen 190 GEKAEELGVEIYPGFAASEVLY--DEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKF- 266 (621)
T ss_pred HHHHHhhCceeccccchhheeE--cCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHh-
Confidence 9999999999999999999888 5555666666643 2 2688999999988753 4666665
Q ss_pred CCc
Q 015088 222 GLE 224 (413)
Q Consensus 222 g~~ 224 (413)
+++
T Consensus 267 ~Lr 269 (621)
T KOG2415|consen 267 DLR 269 (621)
T ss_pred Ccc
Confidence 444
No 185
>PLN02661 Putative thiazole synthesis
Probab=99.07 E-value=8e-09 Score=93.03 Aligned_cols=39 Identities=38% Similarity=0.480 Sum_probs=34.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg 44 (413)
..+||+|||||++|+++|++|++. |++|+|||+....||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 468999999999999999999986 899999999876643
No 186
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=95.04 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=41.2
Q ss_pred CCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088 2 EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 2 ~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~ 49 (413)
+..+...+|+|||+|++|++|||.|+++ ++|+|+|++...||...+.
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence 3455678999999999999999999986 6999999999999887765
No 187
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.06 E-value=3.4e-09 Score=101.56 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
+|||+|||||++|+++|..|+++|++|+|||+...+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~G 37 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLG 37 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccc
Confidence 699999999999999999999999999999996543
No 188
>PLN02268 probable polyamine oxidase
Probab=99.06 E-value=3.7e-09 Score=101.38 Aligned_cols=43 Identities=37% Similarity=0.376 Sum_probs=39.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~ 50 (413)
.+|+|||||++|++||+.|.++|++|+|+|++++.||+..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~ 43 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY 43 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC
Confidence 3799999999999999999999999999999999999876653
No 189
>PLN02676 polyamine oxidase
Probab=99.06 E-value=8.6e-09 Score=99.39 Aligned_cols=45 Identities=38% Similarity=0.443 Sum_probs=39.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCccc
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~ 49 (413)
...+||+|||||++|+++|++|+++|. +|+|+|++...||+..+.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~ 69 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA 69 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence 346899999999999999999999998 699999999998876553
No 190
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.06 E-value=9.4e-09 Score=93.39 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=62.5
Q ss_pred EecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 143 ATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
..+.-|......+++.+.+.+++.|++|+++++|.+|+. .+ +....|.+++|+++.+|+||+|.|-.+.+++.++
T Consensus 163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~-~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--ED-NEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cC-CceEEEEccCCcEEecCEEEEccCcchHHHHHHH
Confidence 334445666678999999999999999999999999998 63 2467888999988999999999998887777665
No 191
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.04 E-value=7.6e-09 Score=100.09 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=34.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
+..|||+|||||++|+++|..|+++|++|+|||+...
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 38 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL 38 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 3579999999999999999999999999999999744
No 192
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.03 E-value=1.7e-09 Score=99.33 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=97.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKVY 87 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (413)
||+|||+|+|||++|+.|.+. ++|+||-|..... ..+.+..+|+ ...+.. ..........+..-.-++.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGI-Aa~~~~~Ds~~~Hv~DTL~AG~glcD~~a---- 81 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGI-AAALSEDDSPELHVADTLAAGAGLCDEEA---- 81 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCce-EeeeCCCCCHHHHHHHHHHhcCCCCcHHH----
Confidence 999999999999999999988 9999999988763 2333344443 333322 2111111111111110100000
Q ss_pred EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH-
Q 015088 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK- 165 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 165 (413)
+.. -...-...++++..+|+++..-....+ ..+... ....-++...+ -....+.+.|.+.+.+
T Consensus 82 -----V~~---iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg-----HS~rRIlH~~~--~TG~~I~~~L~~~v~~~ 146 (518)
T COG0029 82 -----VEF---IVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGG-----HSRRRILHAAD--ATGKEIMTALLKKVRNR 146 (518)
T ss_pred -----HHH---HHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecc-----cCCceEEEecC--CccHHHHHHHHHHHhcC
Confidence 000 000113456666667776432111000 000000 00011111111 2346778888888877
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEc--CCC--cEEEcCEEEEcCCCCh
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNG--EKFWGKKCVVTAGAWV 213 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g--~~i~ad~VV~A~G~~s 213 (413)
.+++++.++.+.+|.. +++.....+.+ .++ ..+.++.||+|||+..
T Consensus 147 p~I~v~e~~~a~~li~--~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 147 PNITVLEGAEALDLII--EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred CCcEEEecchhhhhhh--cCCceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 5999999999999987 64322213433 333 3788999999999865
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.02 E-value=6.4e-09 Score=101.39 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+...+.+.+++.|++++.+++|.++.. + ++.+.+.+.+|+.+.+|.+|+|+|...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~--~--~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIET--E--DGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 45667777888888999999999999987 6 356777777887899999999999853
No 194
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.01 E-value=1.3e-08 Score=97.50 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+ +++++.+|.||+|+|...+
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~--~--~~~v~v~~-~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKN--D--GDQVLVVT-EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--c--CCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence 45666777888889999999999999977 5 34455544 4557999999999997543
No 195
>PRK14694 putative mercuric reductase; Provisional
Probab=99.01 E-value=1.8e-08 Score=97.28 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|+++++++.|.++.. + ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDY--N--GREFILETNAGT-LRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEECCCE-EEeCEEEEccCCCCC
Confidence 46778888889999999999999999987 5 345566665554 999999999998664
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=1.6e-08 Score=97.78 Aligned_cols=33 Identities=42% Similarity=0.590 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~ 38 (413)
..||++|||||++|+++|.+|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 197
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.00 E-value=1.5e-09 Score=103.62 Aligned_cols=45 Identities=42% Similarity=0.448 Sum_probs=41.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~ 50 (413)
.+.+|||||||++|++||.+|.+.|++|+|+|++++.||+..+..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~ 58 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFK 58 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEe
Confidence 467999999999999999999999999999999999999866644
No 198
>PLN02568 polyamine oxidase
Probab=99.00 E-value=2.7e-08 Score=96.72 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=39.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC-----CcEEEEcccCCCCCCCccc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRG-----QKTLLLEQFDFLHHRGSSH 49 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g-----~~V~liE~~~~~gg~~~s~ 49 (413)
+..||+|||||++|+++|.+|++.| ++|+|+|++..+||+..+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 3579999999999999999999887 8999999999998876554
No 199
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.00 E-value=5.9e-08 Score=89.30 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCCChHHhhhhh
Q 015088 151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
.+.++.....+.++++||++++++.|++++. + .|.+++|. +|.++.+|+|+|...+++.+.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~------~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D------GVTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C------cEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 3578888889999999999999999999977 5 34555565 4999999999999998888764
No 200
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.00 E-value=1.4e-08 Score=98.01 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|++++++++|.++.. + ++.+.+.+.++ +++.+|.||+|+|...+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQ--T--DDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 46677888888899999999999999987 5 34566665555 57999999999997653
No 201
>PLN02507 glutathione reductase
Probab=98.99 E-value=1.5e-08 Score=98.18 Aligned_cols=33 Identities=39% Similarity=0.418 Sum_probs=31.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~ 38 (413)
.+|||+|||||++|+.+|.+++++|++|+|||+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 368999999999999999999999999999997
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.99 E-value=1.4e-08 Score=98.17 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+++.|++++++++|.++.. + ++.+.+.+.+| +++.+|.||+|+|...+
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEK--N--DDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 45667788888899999999999999987 5 34566766666 46999999999997553
No 203
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=8.8e-09 Score=96.63 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCC--CEEEcCceEEEEEEecccCC-CeEEEEcCCC----cEEEcCEEEEcCCCChHHhhhhh
Q 015088 153 TKAVSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVK-GGVTVVTSNG----EKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 153 ~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g----~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
..+++.|...++..+ ..|.++++|..+.. . . +.|.|.+.++ +...+|.||+|+|.+..+-++..
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~--~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDS--I--DKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEee--c--cCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 478888888888776 47888999999988 6 4 6888887544 35678999999999863444433
No 204
>PRK14727 putative mercuric reductase; Provisional
Probab=98.98 E-value=4.1e-08 Score=95.03 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+.+.+++.|++++++++|+++.. + ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~--~~~~~v~~~~g~-i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEH--D--DNGFVLTTGHGE-LRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEE--e--CCEEEEEEcCCe-EEeCEEEEccCCCCC
Confidence 35667788888899999999999999987 5 345667666665 999999999998764
No 205
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.98 E-value=5.4e-09 Score=94.89 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~ 42 (413)
||+||||+|.+|+.+|.+|++.| .+|+|||++...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 79999999999999999999997 699999998754
No 206
>PTZ00058 glutathione reductase; Provisional
Probab=98.97 E-value=1.2e-08 Score=99.57 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+|||+|||||++|.++|..+++.|++|+|||++..+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~G 83 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLG 83 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 4689999999999999999999999999999997433
No 207
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.95 E-value=3e-08 Score=89.66 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=58.8
Q ss_pred eEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 139 WVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..++..+.+|. ..+..++.+.+++.|.+|.+...|.+|.. ++ +..+.|+..+|+++.++.||-.++.|..
T Consensus 253 ~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~-gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 253 KGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILL--DS-GKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred CCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheec--cC-CeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 34444555555 78889999999999999999999999988 74 5788999999999999999999998864
No 208
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.95 E-value=2.1e-08 Score=96.74 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
+|||+|||||++|+++|..++++|++|+|||+....||.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~ 41 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT 41 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence 599999999999999999999999999999985545443
No 209
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.95 E-value=1.9e-08 Score=81.56 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=32.6
Q ss_pred CCEEE-cCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088 167 GAVLR-DNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA 211 (413)
Q Consensus 167 Gv~i~-~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~ 211 (413)
|+++. .+.+|++|.. . ++++.+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~--~--~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRR--D--DDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEE--c--CCcEEEEECCCCEEEeCEEEECCCC
Confidence 54433 3678999988 6 4568888899998999999999995
No 210
>PLN02546 glutathione reductase
Probab=98.94 E-value=2.2e-08 Score=97.65 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~ 38 (413)
+|||+|||+|++|..+|..++++|++|+|||+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 211
>PRK10262 thioredoxin reductase; Provisional
Probab=98.93 E-value=2.2e-08 Score=91.88 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+..+||+|||||++|+++|..|+++|++|++||+...
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 45679999999999999999999999999999997543
No 212
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.93 E-value=5.9e-09 Score=92.27 Aligned_cols=168 Identities=23% Similarity=0.255 Sum_probs=89.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY 84 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 84 (413)
+..+||||||||++|.+.|+.|++.|.+|.||||+-.-- .+++........+..+...+++ +.+ .++
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP--------dRivGEllQPGG~~~L~~LGl~--Dcv---e~I 109 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP--------DRIVGELLQPGGYLALSKLGLE--DCV---EGI 109 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc--------hHHHHHhcCcchhHHHHHhCHH--HHh---hcc
Confidence 456899999999999999999999999999999974320 0011000011112222222111 000 011
Q ss_pred eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
+...-.|...+.. .++..--+|. -..+.. +.+..++-.++++.|++.+.
T Consensus 110 DAQ~v~Gy~ifk~------------------------gk~v~~pyP~-~~f~~d------~~GrsFhnGRFvq~lR~ka~ 158 (509)
T KOG1298|consen 110 DAQRVTGYAIFKD------------------------GKEVDLPYPL-KNFPSD------PSGRSFHNGRFVQRLRKKAA 158 (509)
T ss_pred cceEeeeeEEEeC------------------------CceeeccCCC-cCCCCC------cccceeeccHHHHHHHHHHh
Confidence 1111111111111 1111111111 000111 11334455788999998887
Q ss_pred HC-CCEEEcCceEEEEEEecccCC-CeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhh
Q 015088 165 KN-GAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 165 ~~-Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
.. ++++.. ..|.++.+ +++- .++..+++.|+ +..|..-|+|.|.+|+ +-+.+
T Consensus 159 slpNV~~ee-GtV~sLle--e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSn-lRrsL 214 (509)
T KOG1298|consen 159 SLPNVRLEE-GTVKSLLE--EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSN-LRRSL 214 (509)
T ss_pred cCCCeEEee-eeHHHHHh--ccCeEEeEEEecCCCceEEEecceEEEecchhHH-HHHHh
Confidence 65 888884 56777766 5221 34445556665 4556789999999984 44444
No 213
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.92 E-value=4.7e-08 Score=92.21 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCC
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAW 212 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~ 212 (413)
...+.+.+.+.+++.|++++++++|+.++. . ++.+.+.+++|+ ++++|.|++|+|-.
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~--~--~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEK--K--DDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEe--c--CCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 367888899999888899999999999988 6 333777776665 68999999999963
No 214
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.91 E-value=1.8e-07 Score=87.84 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s 213 (413)
.++.+.|.+.+++.|++++.+++|.+++. .+ +....+.+.+|+ .+++|.||+|+|.+.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEF--EG-GRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eC-CEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 46778888999999999999999999987 62 233334444453 689999999999864
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=98.90 E-value=1.3e-07 Score=93.75 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+.+.+++.|+++++++.|+++.. + ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAH--V--DGEFVLTTGHGE-LRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCEEEEEecCCe-EEeCEEEEccCCCcC
Confidence 45677888888999999999999999987 6 345666666665 999999999997654
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.89 E-value=1.5e-07 Score=91.45 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+.+.+++.|+++++++.+.++.. . ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEK--M--DDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 35667888888999999999999999987 5 2345666667878999999999997554
No 217
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.87 E-value=2e-08 Score=97.27 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=48.8
Q ss_pred eChHHHHHHHHHHHHHCCC--EEEcCceEEEEEEecccC---CCeEEEEcCC-Cc--EEEcCEEEEcCCCChHHhhh
Q 015088 150 IKPTKAVSMFQTLAIKNGA--VLRDNMEVKTVLKVKDAV---KGGVTVVTSN-GE--KFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~---~~~~~v~~~~-g~--~i~ad~VV~A~G~~s~~l~~ 218 (413)
.....+.+.|...++..+. .|+++|+|+++.+ .++ .+.|.|++.+ |+ +-.+|.||+|+|.++.+-.+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~--~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER--DPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE--ETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeee--ccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 3446788888988888764 7899999999987 532 2579888754 43 34689999999998765444
No 218
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.87 E-value=1.3e-07 Score=91.40 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CCcEEEcCEEEEcCCCCh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~VV~A~G~~s 213 (413)
..+...+.+.+++.|++++++++|+++.. + ++.+.+.+. +++++++|.||+|+|...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSV--R--GGGKIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEE--c--CCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 34667788888889999999999999987 5 234444432 234799999999999754
No 219
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.87 E-value=2.6e-09 Score=72.86 Aligned_cols=40 Identities=43% Similarity=0.568 Sum_probs=35.0
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE 51 (413)
Q Consensus 12 IIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~ 51 (413)
|||||++|+++|++|+++|++|+|+|+++..||...+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~ 40 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI 40 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE
Confidence 8999999999999999999999999999999877666543
No 220
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.87 E-value=8e-08 Score=85.19 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCC
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGA 211 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~ 211 (413)
..+.+.+++.+++.|++++++++|..... +++ +.+.+.. .+++ +++||.+.+|+|-
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~--~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATR--NGD-GPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeec--cCC-CceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 57888999999999999999999999988 632 3454443 2333 8999999999996
No 221
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.87 E-value=9.7e-08 Score=92.09 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
||+|||+|++|+.+|..|+++|.+|+|||++..+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g 36 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG 36 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 7999999999999999999999999999997643
No 222
>PRK09897 hypothetical protein; Provisional
Probab=98.87 E-value=1.2e-07 Score=91.68 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCC--CEEEcCceEEEEEEecccCCCeEEEEcCC-CcEEEcCEEEEcCCCCh
Q 015088 156 VSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSN-GEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 156 ~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~-g~~i~ad~VV~A~G~~s 213 (413)
...+.+.+.+.| ++++.+++|+++.. . ++.+.+.+.+ +..+.+|.||+|+|...
T Consensus 110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~--~--~~g~~V~t~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 110 FLRLVDQARQQKFAVAVYESCQVTDLQI--T--NAGVMLATNQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHHHHcCCeEEEEECCEEEEEEE--e--CCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence 334455555666 78888999999988 6 4578888755 45789999999999744
No 223
>PRK02106 choline dehydrogenase; Validated
Probab=98.85 E-value=1.9e-07 Score=92.30 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFD 40 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~ 40 (413)
+...+|+||||+|.+|+.+|.+|++ .|++|+|||++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4567999999999999999999999 799999999985
No 224
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.84 E-value=7.8e-08 Score=83.60 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCCh-HHhhhhhcCCcccee
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWV-GKLVKRITGLELPIQ 228 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s-~~l~~~~~g~~~~~~ 228 (413)
-++.+.|...+++.|+.+..+.+|.+.+. .+ +....+.|.+.. .+++|..|+|+|.+. +.+.....++.-|+.
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~--~~-~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC--KG-GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeee--eC-CeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 45567888899999999999999999887 62 345566666654 578999999999854 445444323444443
No 225
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=1.3e-07 Score=91.45 Aligned_cols=36 Identities=39% Similarity=0.489 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
+|||+|||||++|+++|.+|+++|++|+|||++..+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~G 39 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWG 39 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 599999999999999999999999999999997544
No 226
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.81 E-value=1.4e-07 Score=92.67 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~ 41 (413)
|+||||||.+|+.+|.+|++.| ++|+|||++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 69999999853
No 227
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.81 E-value=1.9e-07 Score=95.23 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=39.7
Q ss_pred eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
++-..+.+.|.+.+.+.|++++++++|+++.. . ..++|.||.|+|.+|.
T Consensus 94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--~--------------~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA--L--------------AADADLVIASDGLNSR 142 (765)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--h--------------hcCCCEEEEcCCCCHH
Confidence 45578889999999999999999998876533 2 1478999999999874
No 228
>PLN02529 lysine-specific histone demethylase 1
Probab=98.80 E-value=1.6e-07 Score=93.65 Aligned_cols=45 Identities=36% Similarity=0.358 Sum_probs=40.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~ 50 (413)
...+|+|||||++|+++|..|+++|++|+|+|+++..||+..+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~ 203 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK 203 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence 457999999999999999999999999999999999988765543
No 229
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=1.7e-07 Score=90.34 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
+|+|||||++|+++|..|++.|++|+|||++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 6999999999999999999999999999997654
No 230
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.79 E-value=4.8e-08 Score=84.60 Aligned_cols=37 Identities=30% Similarity=0.523 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
-|||||+|.||++++..+...|-.|+|+|+....||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 5999999999999999999998889999998877654
No 231
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.77 E-value=1.8e-07 Score=90.18 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEccc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~ 39 (413)
.+|||+|||||++|..+|..++++ |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999984
No 232
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.77 E-value=1.4e-07 Score=94.58 Aligned_cols=45 Identities=38% Similarity=0.375 Sum_probs=40.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~ 50 (413)
...+|+|||||++|+++|+.|+++|++|+|+|++...||+..+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~ 281 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK 281 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc
Confidence 457999999999999999999999999999999999988765543
No 233
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=2.4e-08 Score=92.80 Aligned_cols=153 Identities=22% Similarity=0.200 Sum_probs=94.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc-cCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS-HGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK 85 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 85 (413)
.+||||||||-||+.||+..++.|.++.|+--+...-|..+. ...+|.-....
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~l-------------------------- 57 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHL-------------------------- 57 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCccccee--------------------------
Confidence 599999999999999999999999999999876433221111 11111100000
Q ss_pred eEEeeceeeeCCCChhhHH-HHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088 86 VYFKAHQFDMGPSENKSLR-SVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI 164 (413)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (413)
.. +.+.+- .........++.++++.. ..+........++|-..+.+.+++.++
T Consensus 58 -vr----------EIDALGG~Mg~~~D~~~IQ~r~LN~---------------sKGPAVra~RaQaDk~~Y~~~mk~~le 111 (621)
T COG0445 58 -VR----------EIDALGGLMGKAADKAGIQFRMLNS---------------SKGPAVRAPRAQADKWLYRRAMKNELE 111 (621)
T ss_pred -EE----------eehhccchHHHhhhhcCCchhhccC---------------CCcchhcchhhhhhHHHHHHHHHHHHh
Confidence 00 000000 011112223444333331 111111222356677788888988888
Q ss_pred HC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 165 KN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 165 ~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
+. +..++ ...|.++.. +++..++.|.|.+|..+.|+.||++||.+-.
T Consensus 112 ~~~NL~l~-q~~v~dli~--e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 112 NQPNLHLL-QGEVEDLIV--EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred cCCCceeh-HhhhHHHhh--cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 76 77777 678888877 6443578999999999999999999997654
No 234
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.75 E-value=2e-07 Score=90.06 Aligned_cols=34 Identities=50% Similarity=0.644 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|||+|||||++|+++|.+|++.|++|+|||++.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 5999999999999999999999999999999943
No 235
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.73 E-value=2.2e-07 Score=66.02 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.|+|||||+.|+-+|..|++.|.+|+||++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999998654
No 236
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.73 E-value=4e-07 Score=79.42 Aligned_cols=36 Identities=47% Similarity=0.602 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
..+||||||+|.+|+.+|.+|+.+|++|+|+|+...
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 368999999999999999999999999999999753
No 237
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.73 E-value=4.8e-07 Score=82.94 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcc
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s 48 (413)
.....|||||||+||++||.+|.+.|. +|+|+|..++.||+..+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 345789999999999999999997765 89999999999988655
No 238
>PLN03000 amine oxidase
Probab=98.70 E-value=1.7e-07 Score=94.00 Aligned_cols=45 Identities=36% Similarity=0.364 Sum_probs=41.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~ 50 (413)
...+|+|||||++|+++|+.|.+.|++|+|+|++...||+..+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~ 227 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK 227 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence 358999999999999999999999999999999999998876654
No 239
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.67 E-value=6.5e-07 Score=86.55 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
+||++|||+|++|+.+|+.+++.|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 240
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.66 E-value=3.9e-07 Score=88.99 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=35.6
Q ss_pred CCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 2 EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 2 ~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..+..++|+||||+|.+|+++|.+|++.|++|+|||++.
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 345678999999999999999999998899999999984
No 241
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.66 E-value=8.5e-07 Score=87.97 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+|||+|||+|++|..+|..++++|++|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999999999999999999975
No 242
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.64 E-value=3.2e-07 Score=78.13 Aligned_cols=32 Identities=44% Similarity=0.729 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
||+|||||++|+++|.+|++.+.+|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998754
No 243
>PRK07846 mycothione reductase; Reviewed
Probab=98.63 E-value=3.8e-06 Score=80.69 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.+.+. .+.|++++++++|++++. + ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQ--D--GSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEE--c--CCEEEEEECCCcEeecCEEEEEECCccC
Confidence 444555543 356899999999999977 5 3456677777878999999999997654
No 244
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.61 E-value=1.3e-07 Score=97.59 Aligned_cols=38 Identities=37% Similarity=0.414 Sum_probs=34.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
...+|+|||||+||++||++|+++|++|+|+|+.+..|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence 35799999999999999999999999999999987664
No 245
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=7.8e-08 Score=89.60 Aligned_cols=44 Identities=39% Similarity=0.502 Sum_probs=40.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES 52 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~ 52 (413)
+|+|+|||+||++||++|+++|++|+|+|+++.+||...++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~ 45 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS 45 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC
Confidence 69999999999999999999999999999999999988877543
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.57 E-value=1e-06 Score=82.73 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCC
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGL 223 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~ 223 (413)
..+.+.+++.|++++++++|.++.. + +..+.+.+.+|+++.+|.||+|+|...+ .+++.. ++
T Consensus 187 ~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~-gl 249 (377)
T PRK04965 187 SRLQHRLTEMGVHLLLKSQLQGLEK--T--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA-GL 249 (377)
T ss_pred HHHHHHHHhCCCEEEECCeEEEEEc--c--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC-CC
Confidence 3445567778999999999999987 5 3566777888888999999999998764 455444 44
No 247
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.54 E-value=6.5e-07 Score=86.19 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCcEEE--cCEEEEcCCCCh
Q 015088 161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGEKFW--GKKCVVTAGAWV 213 (413)
Q Consensus 161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~~i~--ad~VV~A~G~~s 213 (413)
+.+++.|++++.+++|++|.. + ++.+.+.. .+++.++ +|++|+|+|...
T Consensus 64 ~~~~~~gv~~~~~~~V~~id~--~--~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 64 EEFIKSGIDVKTEHEVVKVDA--K--NKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHHHCCCeEEecCEEEEEEC--C--CCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 345567999999999999987 6 45666654 2354566 999999999853
No 248
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.53 E-value=1.9e-06 Score=81.52 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH-hhhh
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK-LVKR 219 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~-l~~~ 219 (413)
..+.+.+++.|++++++++|+++.. . +.+.+.+.+|+++.+|.||+|+|...+. ++..
T Consensus 190 ~~l~~~l~~~GV~i~~~~~V~~i~~--~---~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~ 248 (396)
T PRK09754 190 RYLLQRHQQAGVRILLNNAIEHVVD--G---EKVELTLQSGETLQADVVIYGIGISANDQLARE 248 (396)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEEc--C---CEEEEEECCCCEEECCEEEECCCCChhhHHHHh
Confidence 3455666778999999999999865 3 4566777888889999999999987653 4443
No 249
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.53 E-value=5.3e-06 Score=80.22 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
|||+|||+|++|+++|+.|+++|++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999987764
No 250
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.52 E-value=6.3e-07 Score=91.62 Aligned_cols=38 Identities=34% Similarity=0.470 Sum_probs=34.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
...+|+|||||+||+++|++|+++|++|+|+|+.+..|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 34689999999999999999999999999999987664
No 251
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.52 E-value=4.3e-06 Score=87.74 Aligned_cols=40 Identities=33% Similarity=0.451 Sum_probs=36.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
..+||+|||||+||++||+.|++.|++|+|+|++...||.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~ 201 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS 201 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe
Confidence 3589999999999999999999999999999998877543
No 252
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.50 E-value=1.5e-05 Score=76.68 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+...+.+.+ +.|++++++++|+++.. + ++.+.+.+.+|+++++|.||+|+|...+
T Consensus 210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQ--D--GDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCEEEEEEE--c--CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 34455555433 46899999999999987 6 3456677777778999999999997543
No 253
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.50 E-value=2.2e-07 Score=85.90 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=39.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR 53 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~ 53 (413)
+||+|||||++|+++|++|++.|.+|+|||++...||.+.+....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g 47 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDET 47 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCC
Confidence 6999999999999999999999999999999988877655543333
No 254
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.48 E-value=6.4e-07 Score=85.39 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+.+|||||||.+|+.+|..|.+.+++|+|||+++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 357999999999999999999877889999998754
No 255
>PLN02785 Protein HOTHEAD
Probab=98.47 E-value=4.2e-06 Score=82.44 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=32.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
+..||+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 689999999863
No 256
>PLN02976 amine oxidase
Probab=98.46 E-value=7.1e-06 Score=85.69 Aligned_cols=43 Identities=33% Similarity=0.420 Sum_probs=38.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s 48 (413)
..++|+|||||++|+++|+.|++.|++|+|+|++...||...+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3579999999999999999999999999999999888876544
No 257
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.44 E-value=7.4e-07 Score=83.44 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
+.+.+++.|++++. .+|++|+. + ++ .|.+.+|+++++|++|+|+|+..
T Consensus 60 ~~~~~~~~gv~~~~-~~v~~id~--~--~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVI-AEATGIDP--D--RR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEE-EEEEEEec--c--cC--EEEECCCCcccccEEEEccCCCC
Confidence 34555667999985 58999987 5 23 46667787799999999999754
No 258
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=5.3e-07 Score=78.42 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=44.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC--CceeecccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE--SRTIRATYP 60 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~--~~~~~~~~~ 60 (413)
++|++|||||++|+.+|..|+++|++|.||||++..||.+-+... .|+.-..+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYG 56 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYG 56 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeecc
Confidence 369999999999999999999999999999999999877655433 455544444
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.40 E-value=2.3e-06 Score=82.00 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~ 42 (413)
+|+|||||++|+.+|..|++. +.+|+|||+++..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 799999999999999999886 6799999998654
No 260
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=6.1e-06 Score=72.60 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=37.1
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
....+|.+|||||..|+++|++.++.|.+|.|+|....+||+
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT 58 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT 58 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce
Confidence 345799999999999999999999999999999998666554
No 261
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.39 E-value=2.4e-06 Score=80.79 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=35.1
Q ss_pred HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.+.|++++.++.|+.+.. + +. .|.+.+|+++.+|++|+|||...
T Consensus 69 ~~~~i~~~~g~~V~~id~--~--~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGR--D--TR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEEC--C--CC--EEEECCCCEEEcCEEEEccCCCC
Confidence 457999999999999977 5 23 34456777899999999999865
No 262
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.38 E-value=0.00055 Score=65.39 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=40.6
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-cCCCcEEEcCEEEEcCCCCh
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~VV~A~G~~s 213 (413)
.+.+.+.+++.|++|+++++|++|.. ++ +++.+. +.+|++++||.||+|+....
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~--~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEA--NA--GGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEE--cC--CcceEEEecCCccccCCEEEEcCCHHH
Confidence 34577778888999999999999998 63 333332 23566799999999988654
No 263
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.37 E-value=9.8e-07 Score=90.21 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=34.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
...+|+|||||+||+++|++|+++|++|+|+|+....|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45799999999999999999999999999999976553
No 264
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.36 E-value=9.4e-07 Score=92.21 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH 43 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g 43 (413)
..+|+|||||+||+++|++|+++|++|+|+|+....|
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 4799999999999999999999999999999986654
No 265
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1e-06 Score=77.05 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT 54 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~ 54 (413)
...||.||||||.+|++||.+.+..|.+|.++|--... ..+.+|+.+|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt-P~GtsWGlGGT 65 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT-PQGTSWGLGGT 65 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC-CCCCccccCce
Confidence 35799999999999999999999999999999974332 24566665544
No 266
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.34 E-value=5.3e-06 Score=78.01 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~ 41 (413)
.+|+|||||+||+++|..|.+. ..+|+||+++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999875 458999998753
No 267
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.32 E-value=2.2e-06 Score=87.76 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=37.0
Q ss_pred HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.++++|++++++++|++|.. + . ..|.+.+|+++.+|++|+|||...
T Consensus 63 ~~~~~gv~~~~g~~V~~Id~--~--~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 63 WYEKHGITLYTGETVIQIDT--D--Q--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHCCCEEEcCCeEEEEEC--C--C--CEEEECCCcEeeCCEEEECCCCCc
Confidence 34567999999999999987 5 2 246667787899999999999853
No 268
>PLN02507 glutathione reductase
Probab=98.31 E-value=1.1e-05 Score=78.56 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=43.3
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.+.+++.|++++++++|+++.. + ++.+.+.+.+|+++++|.||+|+|...+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTK--T--EGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEE--e--CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 34455566778999999999999987 5 3456677777878999999999997553
No 269
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.31 E-value=1e-05 Score=83.02 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI 220 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~ 220 (413)
...+.+.+++.|+++++++.+++|.. ++.+....+.+.+|+++.+|.||+|+|...+ .++...
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~ 253 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQC 253 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhc
Confidence 34566677889999999999999976 4223455677788888999999999998654 344433
No 270
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.30 E-value=1.2e-05 Score=77.34 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCChH
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.+.+++.|+++++++.|+++.. +++ +.+.+.+.+| +.+.+|.||+|+|...+
T Consensus 210 ~~~~~~~l~~~gI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 210 SETITEEYEKEGINVHKLSKPVKVEK--TVE-GKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEE--eCC-ceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 34456667778999999999999977 522 3356666667 46999999999997654
No 271
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.30 E-value=9.3e-06 Score=83.21 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI 220 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~ 220 (413)
..+.+.+++.|+++++++.++++.. + +....|.+.+|+++.+|.||+|+|...+ .++...
T Consensus 186 ~~l~~~l~~~GV~v~~~~~v~~i~~--~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~ 246 (785)
T TIGR02374 186 RLLQRELEQKGLTFLLEKDTVEIVG--A--TKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA 246 (785)
T ss_pred HHHHHHHHHcCCEEEeCCceEEEEc--C--CceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence 3455667788999999999999876 5 3455677788888999999999998654 344433
No 272
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.28 E-value=1.5e-05 Score=76.72 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088 155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI 220 (413)
Q Consensus 155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~ 220 (413)
+.+.+.+.+++.|++++++++|.++.. + +....+.++++ ++.+|.||+|+|...+ .++...
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~ 254 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIG--E--DKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDT 254 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEec--C--CcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhc
Confidence 344556667788999999999999965 4 34455556555 5999999999998653 555544
No 273
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.1e-06 Score=69.05 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHh
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKL 216 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l 216 (413)
..+.+.++++.++.|.+|+. ..|.++.. + ...+.+.|+.+. +.+|.||+|+|+-+..+
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~t-EtVskv~~--s--skpF~l~td~~~-v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIIT-ETVSKVDL--S--SKPFKLWTDARP-VTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhcceeee-eehhhccc--c--CCCeEEEecCCc-eeeeeEEEecccceeee
Confidence 57888999999999999985 46888877 6 578888886666 99999999999876544
No 274
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=4.7e-06 Score=76.27 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
+.+|||||||||-||+-+|...++.|.+.+|+-.+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 3578999999999999999999999999999988743
No 275
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.25 E-value=1.6e-05 Score=76.41 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.+++.|++++++++|+++.. . ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus 212 ~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 212 LLARNMEGRGIRIHPQTSLTSITK--T--DDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEE--c--CCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 345566778999999999999987 5 3456666667778999999999997543
No 276
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1.7e-05 Score=76.90 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5899999999999999999999999999998653
No 277
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.23 E-value=2.1e-05 Score=76.09 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.++++|++++++++|.+++. + ++.+.+.+.+|+++++|.||+|+|...+
T Consensus 222 ~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 222 EVLEEVFARRGMTVLKRSRAESVER--T--GDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHCCcEEEcCCEEEEEEE--e--CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 3455667778999999999999976 5 3456677677888999999999997654
No 278
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.23 E-value=7.2e-06 Score=84.11 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.+++.|++++.+++|++|.. + . ..|.+.+|+++.+|++|+|||...
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~--~--~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINR--Q--E--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeC--C--C--cEEEECCCcEEECCEEEECCCCCc
Confidence 34567999999999999977 5 2 245567787899999999999853
No 279
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=1.8e-05 Score=76.50 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+++|||+|.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4799999999999999999999999999997643
No 280
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.23 E-value=2.2e-05 Score=75.15 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI 220 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~ 220 (413)
..+.+.+++.|++++++++|.++.. + +. + +.+.+|+++.+|.||+|+|...+ .++..+
T Consensus 183 ~~~~~~l~~~gV~v~~~~~v~~i~~--~--~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (427)
T TIGR03385 183 QIVEEELKKHEINLRLNEEVDSIEG--E--ER-V-KVFTSGGVYQADMVILATGIKPNSELAKDS 241 (427)
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEec--C--CC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence 3445566778999999999999976 5 22 3 44456778999999999998654 455543
No 281
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=2.6e-05 Score=75.22 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCChH
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s~ 214 (413)
.+.+.+.+++.|++++++++|++++. + +..+.+...++ .++.+|.||+|+|...+
T Consensus 214 ~~~l~~~L~~~GI~i~~~~~V~~i~~--~--~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 214 AHILREKLENDGVKIFTGAALKGLNS--Y--KKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEE--c--CCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 33445567778999999999999977 5 34455544322 26899999999997543
No 282
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.20 E-value=2.4e-05 Score=74.65 Aligned_cols=58 Identities=28% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
+.+.+.+.+++.|++++++++|.++.. + .+.+++|+++.+|.+|+|+|...+.++..+
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~------~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~ 287 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K------EVVLKDGEVIPTGLVVWSTGVGPGPLTKQL 287 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEeC--C------EEEECCCCEEEccEEEEccCCCCcchhhhc
Confidence 344456667788999999999998865 3 245678888999999999997666666554
No 283
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.17 E-value=1.7e-05 Score=76.04 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
...+...+...|.+|+++++|++|.. + ++.+.+.+.+|++++||+||+|+....
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~--~--~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIER--E--DGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEE--E--SSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred hHHHHHHHhhcCceeecCCcceeccc--c--ccccccccccceEEecceeeecCchhh
Confidence 44445555556789999999999999 7 578899999998899999999999744
No 284
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=3.2e-05 Score=71.79 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFLH 43 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~---g~~V~liE~~~~~g 43 (413)
++|+|||+|++|+.+|.+|.+. ...|.|+|+....|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 5899999999999999999985 12399999987764
No 285
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.14 E-value=8.3e-05 Score=73.51 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
...+...|.+.+++.|++++.++.++++.. ++++.++.+. ..+|+ .+.|+.||+|||++..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVK--NQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEE--cCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 467888999888888999999999999987 6334444443 34565 6789999999999874
No 286
>PRK06370 mercuric reductase; Validated
Probab=98.14 E-value=3.7e-05 Score=74.37 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+|+|||+|..|+.+|..|++.|.+|+|+++.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5799999999999999999999999999998654
No 287
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.14 E-value=7.2e-05 Score=70.01 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=34.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s 48 (413)
.++=|||+|+|+|++|.+|-+. |.+|.|+|+.+..||..-+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 4688999999999999999985 6699999999988765433
No 288
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.6e-06 Score=72.02 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088 153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGGVTVVTSNGEKFWGKKCVVTAGAW 212 (413)
Q Consensus 153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~VV~A~G~~ 212 (413)
.++...|.+..++..+++..-.++++++. .+. ++-..|++.+|..++++.||+++|+.
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~--a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEP--AAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhccee--cCCCCccEEEEecCCceeccceEEEecCcc
Confidence 56777888888888888888888888876 432 25678999999999999999999983
No 289
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.12 E-value=4.6e-05 Score=73.69 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
+.+.+.+.+++.|+++++++.|+++.. .+ ++...+.+.+|+++++|.||+|+|...+
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTL--NA-DGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEE--cC-CceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 344456667788999999999999986 52 2335566666778999999999997543
No 290
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.12 E-value=4.2e-05 Score=73.95 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
..+++|||+|..|+..|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 35799999999999999999999999999998654
No 291
>PTZ00058 glutathione reductase; Provisional
Probab=98.11 E-value=5.4e-05 Score=74.19 Aligned_cols=35 Identities=9% Similarity=0.191 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
..+|+|||||..|+-.|..|++.|.+|+|+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 35799999999999999999999999999998653
No 292
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.10 E-value=3.6e-05 Score=73.77 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI 220 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~ 220 (413)
+.+.+.+++.|++++++++|++++. . .+.+.+|+++.+|.||+|+|...+ +++...
T Consensus 193 ~~l~~~l~~~gI~i~~~~~v~~i~~--~------~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~ 249 (438)
T PRK13512 193 QPILDELDKREIPYRLNEEIDAING--N------EVTFKSGKVEHYDMIIEGVGTHPNSKFIESS 249 (438)
T ss_pred HHHHHHHHhcCCEEEECCeEEEEeC--C------EEEECCCCEEEeCEEEECcCCCcChHHHHhc
Confidence 3445566778999999999999854 2 244456777999999999997653 444443
No 293
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=4.6e-05 Score=73.91 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
..|+|||+|.+|+.+|..|++.|.+|+|+++.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 5899999999999999999999999999998653
No 294
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.06 E-value=4.8e-06 Score=76.47 Aligned_cols=40 Identities=35% Similarity=0.468 Sum_probs=36.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG 46 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~ 46 (413)
.-+++|||||++|++||+.|++.|++|.|+||++..||+-
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 3579999999999999999999999999999999988763
No 295
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.04 E-value=5.7e-06 Score=76.84 Aligned_cols=35 Identities=49% Similarity=0.554 Sum_probs=32.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987654
No 296
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.04 E-value=7.3e-05 Score=72.47 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChH
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~ 214 (413)
..+.+.+++.|+++++++.+.++.. . ++.+.+...++ +++.+|.||+|+|...+
T Consensus 224 ~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 224 NKVGEHMEEHGVKFKRQFVPIKVEQ--I--EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHcCCEEEeCceEEEEEE--c--CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 3455667778999999999999977 5 23444544444 36999999999997543
No 297
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.03 E-value=6e-06 Score=84.99 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
..+|+|||||+||++||++|+++|++|+|+|+....||.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence 479999999999999999999999999999998877544
No 298
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.02 E-value=0.00025 Score=68.27 Aligned_cols=38 Identities=34% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~ 42 (413)
...||.||||||.||+..|.+|++. ..+|+|||++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999996 6899999998644
No 299
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.02 E-value=7.4e-06 Score=75.22 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=27.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~ 42 (413)
.+|+|+||.|+++++.|..|.+.+ .++..+|+.+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999999886 899999987643
No 300
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.01 E-value=5.6e-05 Score=69.77 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
.+.+.+...++++|++++.++.+.++.. ..++....|.+.+|+++.||.||+++|+..
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 3456667788889999999999999988 544578889999999999999999999854
No 301
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.99 E-value=6.6e-05 Score=69.35 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCCh
Q 015088 151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWV 213 (413)
Q Consensus 151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s 213 (413)
....++..|...+++.||+|+++++|++| . + +.+.+.+.++ ..++||.||+|+|+.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~---~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--G---GTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--C---CcEEEEECCCceEEecCEEEEcCCCcc
Confidence 34788999999999999999999999999 4 3 2467776443 3699999999999865
No 302
>PRK12831 putative oxidoreductase; Provisional
Probab=97.99 E-value=8.7e-06 Score=78.36 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=35.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
...||+|||||++|+++|++|+++|++|+|+|+....||
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG 177 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 467999999999999999999999999999999876654
No 303
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=0.00013 Score=70.58 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+++|||||..|+.+|..|++.|.+|+|||+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5799999999999999999999999999998654
No 304
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.94 E-value=0.00011 Score=69.10 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=44.6
Q ss_pred EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcC
Q 015088 141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTA 209 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~ 209 (413)
.++.+..|. .++.+.+.+.+.=.|+.+.+++.|.+|.. ++++..+.|.. +|++++|++||...
T Consensus 223 PfLyP~YG~---GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~--~~~g~~~gV~s-~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 223 PFLYPLYGL---GELPQAFCRLSAVYGGTYMLNRPIDEIVV--DEDGKVIGVKS-EGEVVKAKKVIGDP 285 (438)
T ss_dssp SEEEETT-T---THHHHHHHHHHHHTT-EEESS--EEEEEE--ETTTEEEEEEE-TTEEEEESEEEEEG
T ss_pred CEEEEccCC---ccHHHHHHHHhhhcCcEEEeCCccceeee--ecCCeEEEEec-CCEEEEcCEEEECC
Confidence 344555453 68899999999889999999999999987 64444555654 78889999999543
No 305
>PLN02546 glutathione reductase
Probab=97.94 E-value=0.00015 Score=71.14 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
...+.+.++++|+++++++.|.++.. .+ ++.+.+.+.+++...+|.||+|+|...+
T Consensus 296 ~~~l~~~L~~~GV~i~~~~~v~~i~~--~~-~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 296 RDFVAEQMSLRGIEFHTEESPQAIIK--SA-DGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHHHCCcEEEeCCEEEEEEE--cC-CCEEEEEECCeEEEecCEEEEeeccccC
Confidence 34455667778999999999999976 42 2445666666654458999999997654
No 306
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.92 E-value=0.00011 Score=69.97 Aligned_cols=103 Identities=29% Similarity=0.305 Sum_probs=78.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVY 87 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (413)
.+++|||+|.+|+.+|..|.++|++|+++|+.+..++...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~---------------------------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL---------------------------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence 6899999999999999999999999999999876531100
Q ss_pred EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088 88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG 167 (413)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G 167 (413)
. ..+...+.+.++++|
T Consensus 177 ---------------------------------------------------------------~-~~~~~~~~~~l~~~g 192 (415)
T COG0446 177 ---------------------------------------------------------------D-PEVAEELAELLEKYG 192 (415)
T ss_pred ---------------------------------------------------------------h-HHHHHHHHHHHHHCC
Confidence 0 123445566778889
Q ss_pred CEEEcCceEEEEEEecccCCCeEE---EEcCCCcEEEcCEEEEcCCCChHHhhh
Q 015088 168 AVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGEKFWGKKCVVTAGAWVGKLVK 218 (413)
Q Consensus 168 v~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~~i~ad~VV~A~G~~s~~l~~ 218 (413)
+++++++.+.+++. . .+... +...++..+++|.+++++|...+..+.
T Consensus 193 i~~~~~~~~~~i~~--~--~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~ 242 (415)
T COG0446 193 VELLLGTKVVGVEG--K--GNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA 242 (415)
T ss_pred cEEEeCCceEEEEc--c--cCcceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence 99999999999987 5 22222 466677789999999999987653433
No 307
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.90 E-value=0.00017 Score=71.84 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+|+|||||.+|+-.|..|++.|.+|+|||+.+..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 47999999999999999999999999999987543
No 308
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.86 E-value=1.7e-05 Score=74.16 Aligned_cols=35 Identities=40% Similarity=0.501 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.||+|||||.+|+.+|+.|+++|++|+|+|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987654
No 309
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.86 E-value=2.2e-05 Score=75.44 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=35.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..++|+|||||++|+++|+.|+++|++|+|+|+....||
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG 170 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457999999999999999999999999999999876653
No 310
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.85 E-value=0.00095 Score=60.64 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=48.0
Q ss_pred eChHHHHHHHHH-H--HHHCCCEEEcCceEEEEEEe----cccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcC
Q 015088 150 IKPTKAVSMFQT-L--AIKNGAVLRDNMEVKTVLKV----KDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITG 222 (413)
Q Consensus 150 ~~~~~~~~~l~~-~--~~~~Gv~i~~~~~V~~i~~~----~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g 222 (413)
++-.-+...|.. . .+...+++...+++.++... ..++...+.+.+.+|..+..|.+|-|.|..+ ..++..+
T Consensus 147 ien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns--~vR~~sn 224 (481)
T KOG3855|consen 147 IENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS--VVRKASN 224 (481)
T ss_pred eehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc--hhhhhcC
Confidence 333444444442 2 23457999999998877541 0222356678888998899999999999755 3444445
Q ss_pred Cccce
Q 015088 223 LELPI 227 (413)
Q Consensus 223 ~~~~~ 227 (413)
+++.-
T Consensus 225 id~~~ 229 (481)
T KOG3855|consen 225 IDVAS 229 (481)
T ss_pred CCccc
Confidence 55543
No 311
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.85 E-value=2.2e-05 Score=71.24 Aligned_cols=43 Identities=37% Similarity=0.400 Sum_probs=37.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc--EEEEcccCCCCCCCcc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQK--TLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~--V~liE~~~~~gg~~~s 48 (413)
...+|+|+|||++|+++||+|++++-+ |+|+|+.++.||.-.|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 357899999999999999999999765 5669999999887666
No 312
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.83 E-value=2.6e-05 Score=74.76 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=35.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~--~g~~V~liE~~~~~gg~ 45 (413)
...+|+|||||+||++||..|++ .|++|+|+|+.+.++|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 35689999999999999999997 79999999999887653
No 313
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.79 E-value=0.00039 Score=67.33 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+++|||+|..|+..|..|++.|.+|+|+++.+.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 5799999999999999999999999999998654
No 314
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.78 E-value=3.5e-05 Score=74.56 Aligned_cols=38 Identities=39% Similarity=0.467 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..+|+|||||++|+++|..|+++|++|+|+|+....|+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG 180 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 47999999999999999999999999999999877654
No 315
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.76 E-value=3.3e-05 Score=77.83 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
...+|+|||||++|+++|+.|++.|++|+|+|+....||
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 347999999999999999999999999999999877654
No 316
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00043 Score=60.86 Aligned_cols=36 Identities=42% Similarity=0.597 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
+..|.|||||.||.-+||+++++|..|.|.|-++.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 346999999999999999999999999999988654
No 317
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.74 E-value=4.3e-05 Score=73.72 Aligned_cols=39 Identities=33% Similarity=0.393 Sum_probs=35.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
...+|+|||||++|+++|+.|+++|++|+|+|+....+|
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCc
Confidence 357999999999999999999999999999999876643
No 318
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.70 E-value=4.9e-05 Score=77.31 Aligned_cols=36 Identities=22% Similarity=0.532 Sum_probs=32.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
...+|+|||||+||+++|++|+++|++|+|+|+...
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 457899999999999999999999999999998653
No 319
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.66 E-value=6.3e-05 Score=75.62 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..+|+|||||++|+++|+.|++.|++|+|+|+....||
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46899999999999999999999999999999887654
No 320
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.64 E-value=8.4e-05 Score=69.14 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
....+|+|||+|++|+++|..|++.|++|+|+|+....++
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg 55 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 3457999999999999999999999999999999877653
No 321
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.64 E-value=7.7e-05 Score=70.60 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~-~~g~~V~liE~~~~~gg~ 45 (413)
...|+|||||++|+.+|.+|+ +.|++|+|+|+.+.++|.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 468999999999999999875 579999999999988654
No 322
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.63 E-value=0.0015 Score=60.14 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=28.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~~ 41 (413)
....|+|||||.++..++..|.+++. +|+++-|+..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 35789999999999999999999864 8999988653
No 323
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.62 E-value=0.0011 Score=62.04 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
..+.+.+++.|++++++++|+++.. + .+.+.+|+++.+|.||+|+|...+.++...
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~~--~------~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~ 250 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGPD--G------ALILADGRTLPADAILWATGARAPPWLAES 250 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEcC--C------eEEeCCCCEEecCEEEEccCCChhhHHHHc
Confidence 3455667778999999999988744 2 355667878999999999998766555443
No 324
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.61 E-value=8.4e-05 Score=71.73 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
...+|+|||+|++|+++|..|+++|++|+|+|+.+..||
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 347899999999999999999999999999999887654
No 325
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.58 E-value=0.00058 Score=67.58 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088 152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG 214 (413)
Q Consensus 152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~ 214 (413)
...+...|.+.+++.|++|+.++.+++|.. ++ +.++.+. ..+|+ .+.|+.||+|||++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLM--ED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEe--eC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 356888999989889999999999999987 63 3344333 34565 6889999999999864
No 326
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.53 E-value=0.00012 Score=73.52 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..+|+|||+|++|+++|+.|+++|++|+|+|+.+..||
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 57899999999999999999999999999999987754
No 327
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.53 E-value=0.011 Score=54.20 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=61.8
Q ss_pred HHHHHHcCCcccCCCCeEEEEecCCceeC--hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--
Q 015088 123 RQVLEKYSGRIEIPENWVGVATELGGVIK--PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-- 198 (413)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-- 198 (413)
+++.+.+|. +. .+....+....+..++ ..++.+...+++.+.|+++..++.|.++.. ..+.+.+.+|+
T Consensus 243 ~Dl~k~yp~-l~-~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~------~~I~~~~~~g~~~ 314 (491)
T KOG2495|consen 243 EDLRKIYPE-LK-KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE------KTIHAKTKDGEIE 314 (491)
T ss_pred HHHHHhhhc-ch-hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC------cEEEEEcCCCcee
Confidence 455666665 22 1222234444444443 256666777777788999999999998865 35667777776
Q ss_pred EEEcCEEEEcCCCChHHhhhhh
Q 015088 199 KFWGKKCVVTAGAWVGKLVKRI 220 (413)
Q Consensus 199 ~i~ad~VV~A~G~~s~~l~~~~ 220 (413)
+|..-.+|+++|..+.++.+.+
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred eecceEEEecCCCCCchhhhhH
Confidence 6788889999999888887776
No 328
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.49 E-value=0.00015 Score=70.26 Aligned_cols=38 Identities=34% Similarity=0.364 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..+|+|||||++|+++|..|+++|++|+|+|+....||
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 36999999999999999999999999999999876643
No 329
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.48 E-value=0.00091 Score=65.57 Aligned_cols=33 Identities=39% Similarity=0.401 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 489999999999999999999999999998653
No 330
>PRK10262 thioredoxin reductase; Provisional
Probab=97.48 E-value=0.0013 Score=60.48 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.+|+|||+|..|+-+|..|++.+.+|+++++..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 479999999999999999999999999999864
No 331
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.47 E-value=0.0012 Score=63.64 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.+|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999863
No 332
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.44 E-value=3.3e-05 Score=63.23 Aligned_cols=39 Identities=38% Similarity=0.441 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR 45 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~ 45 (413)
..||+|||+|.+|+++||+.+++ ..+|.|||..-.+||.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 36999999999999999999964 6899999998777543
No 333
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.44 E-value=0.0012 Score=59.80 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+|+|||+|..|+-+|..|++.+.+|+++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 47999999999999999999999999999985
No 334
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.40 E-value=0.00019 Score=71.11 Aligned_cols=38 Identities=34% Similarity=0.405 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..+|+|||+|++|+++|+.|++.|++|+|+|+.+..||
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG 174 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 46899999999999999999999999999999887754
No 335
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.36 E-value=0.0013 Score=61.12 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~ 39 (413)
..|+|||+|..|+-+|..|++.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4799999999999999999999987 9999875
No 336
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.29 E-value=0.00023 Score=67.55 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
.+|+|||||++|+++|..|++.|++|+++|+.+..||
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 6899999999999999999999999999999887754
No 337
>PRK13984 putative oxidoreductase; Provisional
Probab=97.28 E-value=0.00036 Score=69.88 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=35.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
...+|+|||+|++|+++|..|+++|++|+|+|+....+|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 457899999999999999999999999999999887654
No 338
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.0004 Score=62.27 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG 46 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~ 46 (413)
.....|+|||+|+||+.+|.+|.++ +.+|.|+|+.+.+.|..
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 3456999999999999999999985 68999999999886543
No 339
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.21 E-value=0.019 Score=50.72 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=45.1
Q ss_pred cCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhh
Q 015088 145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKR 219 (413)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~ 219 (413)
.....+.-..+.++|.+.++++++++.......++.. ++....+....+-|. +++.+.+-+..-..+.++++.
T Consensus 228 sl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~--~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~ 302 (446)
T KOG3851|consen 228 SLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRT--NDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLAN 302 (446)
T ss_pred CccceecHHHHHHHHHHHHHhcceEeeeccceEEEec--cchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhc
Confidence 4445566689999999999999999988877777766 422122222222243 455565555555455555543
No 340
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.21 E-value=0.0024 Score=58.12 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=33.9
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088 4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL 42 (413)
Q Consensus 4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~ 42 (413)
+...+|+|.||-|++-++.|..|.+.+ .++..+||.+.-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 446799999999999999999999875 789999998643
No 341
>PRK12831 putative oxidoreductase; Provisional
Probab=97.05 E-value=0.0072 Score=58.40 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999999753
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.04 E-value=0.0071 Score=58.46 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~ 39 (413)
.-+|+|||+|..|+-+|..|.+.|. +|++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3589999999999999999999998 89999875
No 343
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.03 E-value=0.0027 Score=62.12 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
..|++.+++.|+++++++....+.. . .....++.++|..+.||.||+|+|..-+
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~--~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG--E--DKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc--C--cceeeEeecCCCcccceeEEEecccccc
Confidence 4567778888999999888877765 4 4677889999999999999999998654
No 344
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.97 E-value=0.0055 Score=60.17 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.+|+|||||..|+-+|..|+..+.+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 479999999999999999999999999998754
No 345
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.021 Score=52.06 Aligned_cols=43 Identities=30% Similarity=0.527 Sum_probs=37.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s 48 (413)
..|||+|+|-|..=+..+..|+..|.+|+.+|+++.-|+..+|
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sas 45 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESAS 45 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccc
Confidence 3499999999999999999999999999999999877655443
No 346
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0016 Score=66.18 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=34.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH 44 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg 44 (413)
..|.|||+|++|++||-.|-+.|+.|+|+||.++.||
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 6899999999999999999999999999999998864
No 347
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.57 E-value=0.028 Score=54.53 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~ 39 (413)
..|+|||+|..|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 479999999999999999888886 78866654
No 348
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.50 E-value=0.03 Score=57.75 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~~ 40 (413)
.+|+|||||..|+-+|..|.+.|.+ |+|++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999987 99998753
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.46 E-value=0.015 Score=54.32 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088 163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA 211 (413)
Q Consensus 163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~ 211 (413)
.++.|+++++++.|++++. . .-.+.+.+|+++..+++|+|||.
T Consensus 137 Yke~gIe~~~~t~v~~~D~--~----~K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADL--A----SKTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred HhhcCceEEEcceeEEeec--c----ccEEEeCCCceeecceEEEeecC
Confidence 4567999999999999987 4 23677789999999999999998
No 350
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.33 E-value=0.0049 Score=49.93 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999863
No 351
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.32 E-value=0.0055 Score=50.85 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999864
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.28 E-value=0.054 Score=52.45 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
..++|||+|..|+-+|..+.+.|. +|+||++++
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 579999999999999999999995 799999864
No 353
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.23 E-value=0.0047 Score=51.41 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=26.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|+|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 59999999999999999999999999999875
No 354
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.23 E-value=0.0064 Score=48.90 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
|+|+|+|..|+..|++|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999864
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.20 E-value=0.062 Score=54.50 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
.+|+|||||..|+-+|..+.+.|. +|+++.++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999986 699988753
No 356
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0068 Score=52.23 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
+++|||+|-.|.+.|..|++.|++|++||++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 599999999999999999999999999999753
No 357
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.08 E-value=0.0096 Score=54.06 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
-..|.|||+|..|...|..++.+|++|+++|...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3569999999999999999999999999999864
No 358
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.97 E-value=0.011 Score=53.89 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..+|+|||+|..|...|..|++.|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999999864
No 359
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.82 E-value=0.099 Score=54.96 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+|+|||||.+|+-+|..+.+.|.+|+++.++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 47999999999999999999999999999875
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.013 Score=52.73 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|+..|++|+++|..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.73 E-value=0.11 Score=51.52 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088 162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV 213 (413)
Q Consensus 162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s 213 (413)
..+++|++++.+.+|+.|.+ . .-.|.++.|.++..|.+|+|||...
T Consensus 68 wy~~~~i~L~~~~~v~~idr--~----~k~V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDR--A----NKVVTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred hHHHcCcEEEcCCeeEEecc--C----cceEEccCCcEeecceeEEecCccc
Confidence 45678999999999999988 5 2357788899899999999999854
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.64 E-value=0.12 Score=52.24 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
..|+|||+|..|+-+|..|.+.|. +|+|+.++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 579999999999999999999986 699998764
No 363
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.63 E-value=0.12 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~-g-~~V~liE~~~ 40 (413)
.+|+|||||.+|+-+|..+.+. | .+|+|+.++.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 5799999999999999998887 5 4899999864
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.63 E-value=0.017 Score=52.49 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
++|+|||+|..|...|.+|++.|.+|+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999985
No 365
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.015 Score=52.93 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999864
No 366
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.015 Score=56.68 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|+|||+|.+|+++|..|.++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999764
No 367
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.60 E-value=0.018 Score=54.96 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
...++|||||+.|+-.|..+++.|.+|+|||+.+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 457999999999999999999999999999998765
No 368
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.45 E-value=0.02 Score=55.06 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 47999999999999999999999999999997654
No 369
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.38 E-value=0.019 Score=52.40 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||.|..|++.|..|++.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.02 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.|+|||.|.+|+++|..|.++|++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999987543
No 371
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.26 E-value=0.025 Score=54.81 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 58999999999999999999999999999997654
No 372
>PRK07846 mycothione reductase; Reviewed
Probab=95.24 E-value=0.026 Score=54.42 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||||..|+.+|..|++.|.+|+|+++.+..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 58999999999999999999999999999997654
No 373
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.18 E-value=0.028 Score=54.53 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||+|.+|+.+|..|++.|.+|+|+++.+..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 58999999999999999999999999999997654
No 374
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.04 Score=49.68 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=37.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS 47 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~ 47 (413)
...|||+|+|-|+.=+..+..|+..|.+|+.||+++.-|...+
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a 46 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA 46 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence 3479999999999999999999999999999999987764433
No 375
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.031 Score=50.32 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..|.|||+|..|...|..|+++|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 46999999999999999999999999999975
No 376
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.032 Score=50.28 Aligned_cols=32 Identities=41% Similarity=0.660 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||+|..|...|..|+++|++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999864
No 377
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.02 E-value=0.047 Score=42.89 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~ 39 (413)
...++|||+|-+|..+++.|.+.|.+ |+|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999986 9999985
No 378
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.037 Score=49.97 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999853
No 379
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.00 E-value=0.033 Score=53.97 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||||.+|+.+|..|++.|.+|+|+++.+..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 47999999999999999999999999999997654
No 380
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.041 Score=53.62 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
|.++..-..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4433344579999999999999999999999999999864
No 381
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.034 Score=50.60 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~ 38 (413)
+|+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 499999999999999999999999999998
No 382
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.93 E-value=0.02 Score=49.06 Aligned_cols=33 Identities=45% Similarity=0.628 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088 10 VIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL 42 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~ 42 (413)
.+|||||+||.++|-.|+.. ..+|+||-+++..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 68999999999999999975 6789999876554
No 383
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.92 E-value=0.043 Score=46.28 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|..|..+|..|++.|. +++|+|.+..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4689999999999999999999999 6999998743
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.91 E-value=0.034 Score=50.57 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
+|+|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4999999999999999999999999999984
No 385
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.80 E-value=0.053 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~ 38 (413)
...|+|||||-.|..-|..|.+.|.+|+||..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 46799999999999999999999999999964
No 386
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.78 E-value=0.04 Score=51.05 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
+|.|||+|..|...|..|+++|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999985
No 387
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.77 E-value=0.055 Score=49.42 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
|+ |-+...|+|||+|..|..+|+.|+..|+ +++|+|....
T Consensus 1 ~~-~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MT-MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CC-CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 44 3344689999999999999999999996 9999998654
No 388
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.76 E-value=0.047 Score=50.24 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+.|.|||+|..|...|..|++.|++|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357999999999999999999999999999985
No 389
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.74 E-value=0.042 Score=53.23 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||+|..|+.+|..|++.|.+|+|+|+.+..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999997654
No 390
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.71 E-value=0.048 Score=52.66 Aligned_cols=34 Identities=38% Similarity=0.511 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999864
No 391
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.69 E-value=0.05 Score=46.09 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..|+|||||.+|...+..|.+.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999874
No 392
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.67 E-value=0.046 Score=52.73 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||||..|+..|..|++.|.+|+||++.+..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999987543
No 393
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.65 E-value=0.045 Score=43.03 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4579999999999999999999998 7999998754
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.64 E-value=0.058 Score=45.61 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 458999999999999999999999999999863
No 395
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.55 E-value=0.25 Score=52.56 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=27.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~ 39 (413)
.+|+|||||.+|+-+|..+.+.|.+ |+++.++
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5899999999999999999999974 7777654
No 396
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.54 E-value=0.058 Score=44.21 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999853
No 397
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.058 Score=49.26 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999753
No 398
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.49 E-value=0.052 Score=49.04 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 399
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.48 E-value=0.06 Score=48.38 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999999753
No 400
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.43 E-value=0.46 Score=48.12 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
.+|+|||+|..|+-+|..+.+.|. +|+++.++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 579999999999999999888885 799998753
No 401
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.36 E-value=0.058 Score=48.88 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
..|.|||+|..|..+|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 469999999999999999999887 899999843
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.33 E-value=0.053 Score=51.50 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||.|..|+..|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 469999999999999999999999999999864
No 403
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.32 E-value=0.06 Score=48.93 Aligned_cols=32 Identities=41% Similarity=0.701 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~ 40 (413)
+|.|||+|..|.++|+.|+++| ..|+|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 4899999865
No 404
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.20 E-value=0.077 Score=48.01 Aligned_cols=33 Identities=42% Similarity=0.402 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|+.+|++|+++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999863
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.20 E-value=0.037 Score=41.18 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...|+|||||-.|..-+..|.+.|.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4689999999999999999999999999999863
No 406
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.16 E-value=0.082 Score=43.12 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=29.9
Q ss_pred cccEEEECCCH-HHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~-aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..+|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 47899999996 6999999999999999999985
No 407
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.03 E-value=0.12 Score=48.30 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-------------CcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRG-------------QKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g-------------~~V~liE~~~~~ 42 (413)
.+++|||||++|.-.|-+|+++- .+|+|||+.+..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 57999999999999999998631 389999998765
No 408
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.01 E-value=0.077 Score=49.18 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~ 40 (413)
.+|+|||+|-.|..+|..|+++| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 36999999999999999999998 8999999973
No 409
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.7 Score=41.84 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+|+|||||-+.+-.|+.|++.+.+|+|+=|++.
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence 3899999999999999999999999999998754
No 410
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.94 E-value=0.078 Score=48.77 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 49999999999999999999999999999853
No 411
>PRK04148 hypothetical protein; Provisional
Probab=93.94 E-value=0.052 Score=42.09 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
..+++||.| .|...|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 569999999 999999999999999999998643
No 412
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.93 E-value=0.082 Score=50.90 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+++|||+|..|+-.|..|++.|.+|+|+++++..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47999999999999999999999999999987543
No 413
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.096 Score=47.69 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..+|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 414
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.84 E-value=0.1 Score=46.00 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.| .+++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 468999999999999999999999 49999998754
No 415
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.83 E-value=0.095 Score=48.22 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4689999999999999999999998 9999998643
No 416
>PRK06116 glutathione reductase; Validated
Probab=93.82 E-value=0.087 Score=50.87 Aligned_cols=35 Identities=34% Similarity=0.259 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
.+|+|||+|.+|+-+|..|++.|.+|+++++++..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 57999999999999999999999999999987543
No 417
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.81 E-value=0.087 Score=51.53 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999864
No 418
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.69 E-value=0.1 Score=47.96 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4689999999999999999999998 8999998754
No 419
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.69 E-value=0.058 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..+|+|||||++|.-+|.-+.-.|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999986
No 420
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.67 E-value=0.077 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 4799999999999999999999999999998753
No 421
>PRK14694 putative mercuric reductase; Provisional
Probab=93.66 E-value=0.097 Score=50.81 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+++|||+|.+|+..|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999999999874
No 422
>PRK13748 putative mercuric reductase; Provisional
Probab=93.65 E-value=0.091 Score=52.36 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+++|||+|..|+-+|..|++.|.+|+||++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999975
No 423
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.65 E-value=0.12 Score=39.18 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
|+|+|.|..|..++..|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999777999999975
No 424
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.64 E-value=0.6 Score=43.11 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCC
Q 015088 166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAW 212 (413)
Q Consensus 166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~ 212 (413)
..+.++.+++|.+++. .++ +.+.+.+. .| ++++.|.||+|||..
T Consensus 291 ~~v~l~~~~ev~~~~~--~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEP--AGD-GRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeec--CCC-ceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3589999999999988 733 33555432 23 378999999999985
No 425
>PRK14727 putative mercuric reductase; Provisional
Probab=93.63 E-value=0.089 Score=51.22 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999874
No 426
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.62 E-value=0.081 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||.|..|+..|..|+++|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 49999999999999999999999999999864
No 427
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.52 E-value=0.27 Score=48.30 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+|+|||+|.+|+=.|.+|++...+|.+.-|+
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 57999999999999999999998899988875
No 428
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.52 E-value=0.14 Score=40.58 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.8
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGa-G~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
+|+|||+ |-.|.++|+.|...++ ++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5999999 9999999999999865 799999863
No 429
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.48 E-value=0.13 Score=43.85 Aligned_cols=35 Identities=34% Similarity=0.358 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4689999999999999999999998 5999998743
No 430
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.39 E-value=0.11 Score=47.64 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||+|..|...|..|++.|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999853
No 431
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.38 E-value=0.12 Score=48.28 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..+|+|||+|.+|..+|..|...|.+|+++|++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999999999999999999999999999985
No 432
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.33 E-value=0.11 Score=47.60 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=55.3
Q ss_pred ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhh
Q 015088 148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVK 218 (413)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~ 218 (413)
.-+-|.-+.++-.+.+++.|+.++-|..|.++.. . ...+.++++||.+++.|+||+|+|.-.+ ++..
T Consensus 388 ~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~--~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 388 EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--C--CKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--h--ccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 4456777788888888999999999999999877 6 5678889999999999999999997443 4443
No 433
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.31 E-value=0.11 Score=50.59 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||+|..|...|..|+++|++|+|+|+..
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999853
No 434
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.29 E-value=0.15 Score=41.98 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
.|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 5999998743
No 435
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.26 E-value=0.11 Score=47.21 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
.|.|+|+|..|...|++|++.|.+|+++-|...
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 599999999999999999999988888887653
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.20 E-value=0.16 Score=43.02 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 5789999999999999999999997 8999998643
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.17 E-value=0.11 Score=46.48 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 49999999999999999999999999999853
No 438
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.16 E-value=0.11 Score=43.61 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.....|.|||||..|.-.|-..+..|+.|.|+|++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 345689999999999999999999999999999874
No 439
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.16 E-value=0.17 Score=40.20 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
.|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 7999998754
No 440
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.14 E-value=0.15 Score=41.55 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=28.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
.+|.+||-|..|...|..|.++|++|.++|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 36999999999999999999999999999975
No 441
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.12 E-value=0.17 Score=46.03 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=31.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
+...+|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 345699999999999999999999987 799999854
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.05 E-value=0.16 Score=44.28 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999999999999999999997 8999998754
No 443
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.05 E-value=0.47 Score=45.02 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088 164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG 214 (413)
Q Consensus 164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~ 214 (413)
.+.++.++.+++|.++.. . .. .+.+.+| ++..|++|+|+|+...
T Consensus 64 ~~~~i~~~~~~~v~~id~--~--~~--~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 64 RATGIDVRTGTEVTSIDP--E--NK--VVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred HhhCCEEeeCCEEEEecC--C--CC--EEEECCC-cccccEEEEcCCCccc
Confidence 356899999999999977 5 23 3445566 5999999999998654
No 444
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.01 E-value=0.12 Score=49.75 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~ 40 (413)
.|+|||.|..|+.+|..|+++| ++|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5999999999999999999984 7899999764
No 445
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.99 E-value=0.13 Score=50.07 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.86 E-value=0.17 Score=44.23 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4789999999999999999999997 8999998643
No 447
>PRK08328 hypothetical protein; Provisional
Probab=92.76 E-value=0.19 Score=43.61 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4689999999999999999999997 7999987643
No 448
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.72 E-value=0.18 Score=43.49 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc---EEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQK---TLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~---V~liE~~~ 40 (413)
...++|+|+|-+|..+|..|.+.|.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35799999999999999999999975 99999974
No 449
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.60 E-value=0.18 Score=45.26 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~ 39 (413)
..|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999997 79999985
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.58 E-value=0.18 Score=43.41 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=28.2
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 9 dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
+|.||| +|..|.+.|..|++.|++|++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 499997 7999999999999999999998764
No 451
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.57 E-value=0.2 Score=43.31 Aligned_cols=35 Identities=43% Similarity=0.428 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999998 8999998643
No 452
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.57 E-value=0.16 Score=47.70 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.|.|||.|..|+.+|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 49999999999999988875 99999999865
No 453
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.55 E-value=0.2 Score=42.28 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..++|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999998864
No 454
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.52 E-value=0.15 Score=52.12 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 455
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.41 E-value=0.2 Score=45.64 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
.+|.|||+|..|...|+.|+..|+ +|.|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999854
No 456
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.39 E-value=0.16 Score=51.81 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..++.+|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 457
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.29 E-value=0.19 Score=47.69 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~ 42 (413)
...|+|+|-|..|+++|..|.++|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 568999999999999999999999999999976544
No 458
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.23 E-value=0.24 Score=45.06 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
+..|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5689999999999999999998876 799999754
No 459
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.19 E-value=0.22 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|+|+|+|.+|+++|..|+++|.+|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999999999999999754
No 460
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.18 E-value=0.18 Score=45.29 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..|.|||||..|...|..++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46999999999999999999988999999987
No 461
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.12 E-value=0.24 Score=43.03 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC-----------CcEEEEcccCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRG-----------QKTLLLEQFDF 41 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g-----------~~V~liE~~~~ 41 (413)
+..+|+|||+|-.|+.++..|++.| .+++|+|.+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4679999999999999999999974 28899997643
No 462
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.11 E-value=0.16 Score=39.77 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
++|+|+|..+...|..+...|++|+|+|.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998754
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.08 E-value=0.19 Score=45.61 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088 10 VIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD 40 (413)
Q Consensus 10 vvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~ 40 (413)
|.|||+|..|..+|+.|+..|+ +|+|+|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998877 999999864
No 464
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.06 E-value=0.23 Score=48.71 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...|.|+|.|.+|+++|..|.++|++|++.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3469999999999999999999999999999754
No 465
>PRK08223 hypothetical protein; Validated
Probab=92.03 E-value=0.27 Score=43.73 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 5689999999999999999999997 8999998754
No 466
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.96 E-value=0.23 Score=45.17 Aligned_cols=33 Identities=36% Similarity=0.669 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~ 41 (413)
.|+|||+|-+|.++|+.|+..| .+++|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999998 47999998643
No 467
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.92 E-value=0.2 Score=48.50 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~-~A~~L~~~g~~V~liE~~~ 40 (413)
...|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 357999999999999 6999999999999999754
No 468
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.92 E-value=0.22 Score=42.43 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL 42 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~ 42 (413)
+..|+|||.|-.|..++-.|++.|. +++|||.++..
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~ 66 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVC 66 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccc
Confidence 4689999999999999999999997 99999998754
No 469
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.84 E-value=0.2 Score=48.54 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...|+|+|+|.+|+.++..+...|.+|+++|.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 470
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.83 E-value=0.23 Score=46.79 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 479999999999999999999999999999864
No 471
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.83 E-value=0.28 Score=41.40 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4789999999999999999999998 6999998754
No 472
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.78 E-value=0.3 Score=42.21 Aligned_cols=35 Identities=40% Similarity=0.373 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4689999999999999999999998 8999998754
No 473
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.76 E-value=0.21 Score=51.09 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..++.+|++|+|+|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 469999999999999999999999999999864
No 474
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.73 E-value=0.28 Score=41.30 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
...|+|||+|-.|+.+|..|++.|. +++|+|.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4689999999999999999999998 6999998753
No 475
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.68 E-value=0.29 Score=44.77 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~ 40 (413)
+..|+|||+|..|.++|+.|+..| .+++|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999988 5899999864
No 476
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.66 E-value=0.4 Score=34.17 Aligned_cols=32 Identities=38% Similarity=0.562 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHc-CCcEEEEcc
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ 38 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~ 38 (413)
..+++|+|.|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45799999999999999999998 678999998
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.53 E-value=0.31 Score=47.00 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|+|+|.|.+|+++|..|+++|++|++.|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999754
No 478
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.50 E-value=0.26 Score=47.54 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
|+... ...|+|+|.|.+|.++|..|. +|.+|++.|..
T Consensus 1 ~~~~~-~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~ 37 (454)
T PRK01368 1 MNSHT-KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL 37 (454)
T ss_pred CcCCC-CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence 55333 357999999999999999998 49999999954
No 479
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.50 E-value=0.35 Score=44.70 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
|.......+|.|||+|..|.+.|..|++.| .|+++.++
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~ 38 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRS 38 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence 433445578999999999999999999999 67776553
No 480
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.41 E-value=0.26 Score=44.54 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38899999999999999999999999999863
No 481
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.20 E-value=0.28 Score=47.45 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|.|+|.|.+|+++|..|.+.|++|++.|.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 482
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.17 E-value=0.34 Score=43.76 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...++|||.|.+|..+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999863
No 483
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.17 E-value=0.36 Score=41.76 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
.|+|||+|-.|+.++..|++.|. +++|+|.+..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999997 8999998754
No 484
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.00 E-value=0.39 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=29.5
Q ss_pred cccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
...++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999864
No 485
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=90.97 E-value=0.38 Score=42.95 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF 41 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~ 41 (413)
.|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 48999999999999999999997 8999998643
No 486
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.94 E-value=0.27 Score=47.37 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
++|.|||.|..|...|..|+++|++|+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 487
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=0.29 Score=44.92 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=36.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088 6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR 45 (413)
Q Consensus 6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~ 45 (413)
..+||||||-|+.=...|...++.|.+|+=+|.+..-||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 4799999999999999999999999999999999877654
No 488
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.91 E-value=0.33 Score=43.59 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
...++|||.|-+|..+|..|...|.+|+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999863
No 489
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.89 E-value=0.39 Score=43.24 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~ 39 (413)
..++|+|+|-+|.++|+.|++.|.+ |+|+.|+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4689999999999999999999986 9999985
No 490
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.75 E-value=0.29 Score=50.06 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~-~~g~~V~liE~~~ 40 (413)
..|.|||+|..|...|..++ ..|++|+++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999999 8899999999853
No 491
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.73 E-value=0.31 Score=47.28 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
..|+|+|.|.+|.++|..|.++|.+|++.|.+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 469999999999999999999999999999754
No 492
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.71 E-value=0.34 Score=46.84 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
+|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 59999999999999999999999999999854
No 493
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.69 E-value=3 Score=41.60 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEEccc
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~ 39 (413)
..|+|||+|..|+-+|..+.+.| .+|+|+.+.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 46889999999888888888877 467777764
No 494
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.65 E-value=0.39 Score=43.70 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
..|.|||+|..|.+.|..|.+.|. +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899998753
No 495
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.63 E-value=0.49 Score=41.39 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=29.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088 8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
..++|.|| |..|..+|.+|+++|.+|+++++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 45999998 999999999999999999999875
No 496
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.58 E-value=0.45 Score=42.40 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088 7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41 (413)
Q Consensus 7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~ 41 (413)
...|+|||.|..|-+.|..|.++|+.|.++.++..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 35799999999999999999999999999998754
No 497
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.53 E-value=0.42 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
.|.|||+|-.|.++|+.|...+. ++.|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 48999999999999999999876 799999754
No 498
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.49 E-value=0.44 Score=44.71 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=32.0
Q ss_pred CCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088 5 GEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD 40 (413)
Q Consensus 5 ~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~ 40 (413)
.....|+|.|| |..|..++.+|.++|++|+.+++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34578999998 9999999999999999999999753
No 499
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.47 E-value=0.4 Score=44.92 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=30.4
Q ss_pred cccEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015088 7 KFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF 39 (413)
Q Consensus 7 ~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~ 39 (413)
...|+||| .|..|.+.|..|.++|++|++++++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 35799999 8999999999999999999999985
No 500
>PLN02602 lactate dehydrogenase
Probab=90.45 E-value=0.49 Score=43.71 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088 8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD 40 (413)
Q Consensus 8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~ 40 (413)
..|+|||+|-.|.++|+.|+..+. ++.|+|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998876 799999754
Done!