Query 015089
Match_columns 413
No_of_seqs 198 out of 590
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2688 Transcription-associat 100.0 4.1E-72 9E-77 553.4 33.5 382 14-408 1-393 (394)
2 COG5600 Transcription-associat 100.0 2.7E-62 5.9E-67 473.3 32.4 385 14-407 1-411 (413)
3 KOG2581 26S proteasome regulat 100.0 2.1E-36 4.6E-41 295.3 26.0 292 72-396 124-420 (493)
4 KOG1464 COP9 signalosome, subu 99.9 2E-21 4.4E-26 182.7 23.5 230 150-401 163-411 (440)
5 PF01399 PCI: PCI domain; Int 99.6 8.2E-15 1.8E-19 121.0 13.0 103 284-399 2-105 (105)
6 KOG2908 26S proteasome regulat 98.9 1.5E-06 3.3E-11 84.9 26.7 217 170-401 112-341 (380)
7 KOG1463 26S proteasome regulat 98.9 2.4E-07 5.2E-12 90.5 19.8 213 169-398 164-389 (411)
8 COG5159 RPN6 26S proteasome re 98.4 3.6E-05 7.9E-10 74.1 20.1 212 169-399 161-388 (421)
9 KOG2582 COP9 signalosome, subu 98.4 0.0002 4.3E-09 71.0 24.2 180 210-407 177-367 (422)
10 smart00088 PINT motif in prote 98.0 3.2E-05 6.8E-10 62.0 8.9 66 319-401 6-71 (88)
11 smart00753 PAM PCI/PINT associ 98.0 3.2E-05 6.8E-10 62.0 8.9 66 319-401 6-71 (88)
12 KOG2753 Uncharacterized conser 97.5 0.035 7.6E-07 54.7 21.4 164 217-400 166-340 (378)
13 KOG1497 COP9 signalosome, subu 97.4 0.0087 1.9E-07 58.7 15.6 238 145-407 116-370 (399)
14 PF10255 Paf67: RNA polymerase 97.0 0.18 3.8E-06 51.9 21.3 194 168-379 118-346 (404)
15 KOG0687 26S proteasome regulat 96.1 0.27 5.8E-06 48.7 15.2 166 217-399 182-362 (393)
16 PF07719 TPR_2: Tetratricopept 95.7 0.017 3.7E-07 36.9 3.9 32 217-248 2-33 (34)
17 COG5187 RPN7 26S proteasome re 95.5 0.53 1.2E-05 46.1 14.5 167 216-399 192-376 (412)
18 KOG2758 Translation initiation 95.3 0.091 2E-06 51.8 8.9 99 286-401 292-396 (432)
19 PF14938 SNAP: Soluble NSF att 94.6 1.2 2.6E-05 43.4 14.7 134 146-309 129-262 (282)
20 KOG0686 COP9 signalosome, subu 94.5 1.9 4.1E-05 44.1 15.9 197 179-397 193-408 (466)
21 PF13371 TPR_9: Tetratricopept 94.4 0.12 2.7E-06 38.9 6.0 63 179-250 1-63 (73)
22 PF13432 TPR_16: Tetratricopep 94.3 0.19 4.1E-06 37.1 6.6 61 180-249 4-64 (65)
23 KOG1498 26S proteasome regulat 94.3 5.2 0.00011 40.8 18.4 211 173-400 131-399 (439)
24 PF00515 TPR_1: Tetratricopept 92.5 0.23 5E-06 31.7 3.9 32 217-248 2-33 (34)
25 KOG1076 Translation initiation 92.1 4.6 0.0001 43.9 14.8 204 176-402 487-766 (843)
26 TIGR02552 LcrH_SycD type III s 90.6 3.7 8E-05 34.4 10.6 68 175-251 53-120 (135)
27 PF13424 TPR_12: Tetratricopep 90.0 1.2 2.6E-05 33.9 6.4 71 172-246 4-76 (78)
28 cd00189 TPR Tetratricopeptide 89.1 2.9 6.3E-05 30.7 7.9 64 175-247 36-99 (100)
29 PF12895 Apc3: Anaphase-promot 88.5 1 2.2E-05 35.1 5.1 54 179-242 31-84 (84)
30 PF13181 TPR_8: Tetratricopept 88.1 0.87 1.9E-05 28.8 3.7 31 217-247 2-32 (34)
31 PRK15359 type III secretion sy 88.0 7 0.00015 34.0 10.6 79 174-261 59-139 (144)
32 PF13414 TPR_11: TPR repeat; P 88.0 2.6 5.6E-05 31.1 6.9 62 176-247 6-69 (69)
33 PF13174 TPR_6: Tetratricopept 87.7 0.74 1.6E-05 28.7 3.2 31 219-249 3-33 (33)
34 KOG2072 Translation initiation 87.5 1.9 4.1E-05 47.5 7.7 72 320-404 426-497 (988)
35 PF09012 FeoC: FeoC like trans 87.4 1.2 2.5E-05 33.9 4.6 37 347-388 12-48 (69)
36 cd00189 TPR Tetratricopeptide 86.6 5.8 0.00013 29.0 8.2 64 178-250 5-68 (100)
37 PF13414 TPR_11: TPR repeat; P 85.2 2.1 4.6E-05 31.6 5.0 34 217-250 4-37 (69)
38 PF09976 TPR_21: Tetratricopep 83.9 27 0.00058 30.0 13.5 84 146-243 62-145 (145)
39 PF04733 Coatomer_E: Coatomer 82.9 4.6 9.9E-05 39.7 7.6 29 173-201 131-159 (290)
40 PF13428 TPR_14: Tetratricopep 81.7 2.2 4.8E-05 29.1 3.6 32 219-250 4-35 (44)
41 COG5071 RPN5 26S proteasome re 80.6 64 0.0014 32.1 18.9 211 173-400 131-399 (439)
42 TIGR02795 tol_pal_ybgF tol-pal 80.1 8.7 0.00019 30.8 7.3 69 176-250 42-110 (119)
43 PF10602 RPN7: 26S proteasome 79.1 49 0.0011 29.9 12.8 116 146-268 50-168 (177)
44 smart00028 TPR Tetratricopepti 77.2 3.6 7.9E-05 23.8 3.2 31 217-247 2-32 (34)
45 PF13176 TPR_7: Tetratricopept 72.3 4.3 9.3E-05 26.4 2.7 27 220-246 3-29 (36)
46 PRK10866 outer membrane biogen 71.9 69 0.0015 30.5 12.0 64 181-250 40-103 (243)
47 PF03399 SAC3_GANP: SAC3/GANP/ 71.8 20 0.00044 32.6 8.1 137 213-360 53-203 (204)
48 KOG2300 Uncharacterized conser 70.7 57 0.0012 34.5 11.5 137 167-307 398-553 (629)
49 PF13424 TPR_12: Tetratricopep 70.7 8.6 0.00019 29.0 4.5 34 214-247 3-36 (78)
50 TIGR02795 tol_pal_ybgF tol-pal 70.6 24 0.00051 28.2 7.5 66 178-249 7-72 (119)
51 PF14559 TPR_19: Tetratricopep 70.4 7.2 0.00016 28.5 4.0 57 184-249 2-58 (68)
52 KOG2300 Uncharacterized conser 69.8 72 0.0016 33.8 12.0 137 212-358 363-529 (629)
53 TIGR01716 RGG_Cterm transcript 69.1 94 0.002 28.5 15.4 73 172-247 127-199 (220)
54 KOG4626 O-linked N-acetylgluco 69.0 86 0.0019 34.4 12.6 86 146-248 334-420 (966)
55 PRK11788 tetratricopeptide rep 67.3 34 0.00073 34.1 9.3 72 174-249 142-213 (389)
56 PF13812 PPR_3: Pentatricopept 66.8 11 0.00025 23.2 3.8 31 174-204 2-32 (34)
57 TIGR03302 OM_YfiO outer membra 66.3 1.1E+02 0.0023 28.1 15.7 142 79-249 38-199 (235)
58 PLN03088 SGT1, suppressor of 66.2 80 0.0017 31.9 11.7 88 147-250 17-104 (356)
59 PRK02603 photosystem I assembl 65.9 64 0.0014 28.5 9.9 72 171-249 33-105 (172)
60 KOG2002 TPR-containing nuclear 65.7 2.5E+02 0.0054 32.3 15.9 91 145-249 249-340 (1018)
61 TIGR02917 PEP_TPR_lipo putativ 64.6 1.6E+02 0.0034 32.2 14.6 68 174-250 126-193 (899)
62 PF13429 TPR_15: Tetratricopep 63.9 24 0.00053 33.7 7.2 68 176-250 113-180 (280)
63 PF13374 TPR_10: Tetratricopep 63.3 8.9 0.00019 24.8 2.9 29 219-247 5-33 (42)
64 PF10075 PCI_Csn8: COP9 signal 63.0 21 0.00045 31.0 6.0 78 284-378 43-121 (143)
65 PRK10803 tol-pal system protei 62.7 23 0.00049 34.4 6.7 62 182-250 152-214 (263)
66 TIGR02552 LcrH_SycD type III s 62.0 64 0.0014 26.6 8.7 66 175-249 19-84 (135)
67 TIGR02521 type_IV_pilW type IV 60.0 67 0.0015 28.2 9.0 68 174-250 32-99 (234)
68 TIGR02917 PEP_TPR_lipo putativ 59.2 2.7E+02 0.0058 30.3 16.4 66 175-249 671-736 (899)
69 PRK11189 lipoprotein NlpI; Pro 54.3 24 0.00052 34.5 5.4 40 216-255 236-275 (296)
70 PF08784 RPA_C: Replication pr 54.1 34 0.00075 27.7 5.5 37 347-388 63-99 (102)
71 TIGR03302 OM_YfiO outer membra 53.8 49 0.0011 30.5 7.2 68 177-251 37-105 (235)
72 PF13525 YfiO: Outer membrane 53.5 1.5E+02 0.0032 27.1 10.3 137 181-327 13-168 (203)
73 COG1522 Lrp Transcriptional re 52.9 28 0.0006 30.2 5.0 41 347-392 20-60 (154)
74 PF13041 PPR_2: PPR repeat fam 51.7 29 0.00062 24.0 4.0 31 174-204 4-34 (50)
75 TIGR02521 type_IV_pilW type IV 51.4 1.7E+02 0.0036 25.6 16.3 68 175-249 101-168 (234)
76 PF14853 Fis1_TPR_C: Fis1 C-te 51.3 26 0.00056 25.4 3.7 33 217-249 2-34 (53)
77 TIGR00990 3a0801s09 mitochondr 50.5 92 0.002 33.7 9.6 62 178-248 438-499 (615)
78 PRK11189 lipoprotein NlpI; Pro 50.5 2.4E+02 0.0051 27.4 11.7 29 220-248 136-164 (296)
79 KOG3250 COP9 signalosome, subu 50.4 19 0.00042 33.8 3.7 96 282-398 59-154 (258)
80 PF13432 TPR_16: Tetratricopep 50.3 27 0.00058 25.2 3.9 30 220-249 1-30 (65)
81 PF07721 TPR_4: Tetratricopept 48.7 17 0.00037 21.8 2.2 23 218-240 3-25 (26)
82 PRK10049 pgaA outer membrane p 48.1 4E+02 0.0087 29.8 14.4 126 175-306 312-452 (765)
83 PRK11179 DNA-binding transcrip 47.2 40 0.00086 29.6 5.2 37 347-388 21-57 (153)
84 PRK10370 formate-dependent nit 46.9 1E+02 0.0022 28.3 8.0 80 171-250 14-107 (198)
85 PRK15363 pathogenicity island 46.6 49 0.0011 29.6 5.5 85 146-247 49-134 (157)
86 PRK11788 tetratricopeptide rep 46.3 3E+02 0.0066 27.1 18.0 143 71-249 32-174 (389)
87 TIGR00756 PPR pentatricopeptid 45.8 42 0.00092 20.3 3.8 30 175-204 2-31 (35)
88 PRK11169 leucine-responsive tr 45.6 57 0.0012 29.0 6.0 40 346-390 25-64 (164)
89 PRK10803 tol-pal system protei 45.1 91 0.002 30.2 7.7 68 178-251 185-252 (263)
90 PF09756 DDRGK: DDRGK domain; 44.6 45 0.00097 30.8 5.1 48 348-400 112-159 (188)
91 PF01535 PPR: PPR repeat; Int 44.2 27 0.00059 20.8 2.7 27 175-201 2-28 (31)
92 PF10300 DUF3808: Protein of u 43.6 1.8E+02 0.0038 30.7 10.1 76 186-272 246-322 (468)
93 PF09976 TPR_21: Tetratricopep 43.5 1.6E+02 0.0034 25.1 8.4 57 179-241 54-110 (145)
94 PF01978 TrmB: Sugar-specific 43.2 1.2E+02 0.0025 22.5 6.5 36 348-388 21-56 (68)
95 PF10516 SHNi-TPR: SHNi-TPR; 43.0 34 0.00074 23.0 3.1 25 221-245 6-30 (38)
96 PRK02603 photosystem I assembl 42.7 66 0.0014 28.4 5.9 37 211-247 30-66 (172)
97 PF08631 SPO22: Meiosis protei 42.2 91 0.002 30.2 7.3 86 184-270 4-99 (278)
98 KOG4234 TPR repeat-containing 41.6 48 0.001 31.3 4.8 29 223-251 102-130 (271)
99 PF01325 Fe_dep_repress: Iron 41.0 1.1E+02 0.0024 22.5 5.9 46 330-385 8-53 (60)
100 PF04733 Coatomer_E: Coatomer 40.6 2.3E+02 0.005 27.8 9.9 122 170-306 164-288 (290)
101 PF02064 MAS20: MAS20 protein 40.5 66 0.0014 27.5 5.2 30 221-250 68-97 (121)
102 CHL00033 ycf3 photosystem I as 40.0 1.5E+02 0.0032 25.9 7.8 70 174-245 73-142 (168)
103 TIGR00990 3a0801s09 mitochondr 39.6 5.1E+02 0.011 27.9 16.2 64 177-249 403-466 (615)
104 smart00344 HTH_ASNC helix_turn 38.2 62 0.0014 26.2 4.7 36 348-388 16-51 (108)
105 PRK10866 outer membrane biogen 37.9 3.6E+02 0.0078 25.6 15.2 169 77-269 35-226 (243)
106 PRK15331 chaperone protein Sic 37.7 61 0.0013 29.3 4.8 38 219-256 108-145 (165)
107 PRK15431 ferrous iron transpor 37.6 1E+02 0.0022 24.3 5.4 34 348-386 15-48 (78)
108 COG3071 HemY Uncharacterized e 37.5 1.8E+02 0.0039 29.9 8.5 112 221-336 89-240 (400)
109 PRK12370 invasion protein regu 36.6 4.1E+02 0.0089 28.4 11.8 61 180-250 345-406 (553)
110 PLN03081 pentatricopeptide (PP 36.4 2.9E+02 0.0064 30.3 11.0 59 174-244 361-419 (697)
111 PRK15359 type III secretion sy 36.3 2.1E+02 0.0045 24.5 8.0 63 179-250 30-92 (144)
112 KOG1156 N-terminal acetyltrans 36.3 1.1E+02 0.0024 33.5 7.1 39 210-248 365-403 (700)
113 PF07729 FCD: FCD domain; Int 36.2 1.9E+02 0.0042 22.8 7.4 26 282-307 97-122 (125)
114 TIGR00540 hemY_coli hemY prote 35.4 63 0.0014 33.0 5.2 39 210-248 329-369 (409)
115 PF14559 TPR_19: Tetratricopep 34.4 71 0.0015 23.0 4.1 24 227-250 2-25 (68)
116 PRK10370 formate-dependent nit 34.0 3.7E+02 0.0079 24.5 10.4 60 182-250 117-178 (198)
117 PF13429 TPR_15: Tetratricopep 33.8 1.9E+02 0.0041 27.5 8.0 88 147-250 161-248 (280)
118 PLN03077 Protein ECB2; Provisi 33.7 4.3E+02 0.0093 29.8 11.9 125 70-241 255-379 (857)
119 COG3071 HemY Uncharacterized e 33.3 44 0.00095 34.2 3.4 34 217-250 329-362 (400)
120 PF10602 RPN7: 26S proteasome 33.1 99 0.0022 27.9 5.5 52 217-270 37-88 (177)
121 PHA02608 67 prohead core prote 33.0 1.9E+02 0.0041 22.7 6.1 20 286-305 2-21 (80)
122 PF12569 NARP1: NMDA receptor- 33.0 4.1E+02 0.0088 28.5 10.9 128 180-326 11-152 (517)
123 PRK11906 transcriptional regul 32.8 69 0.0015 33.6 4.9 43 217-262 373-415 (458)
124 PF08672 APC2: Anaphase promot 32.7 73 0.0016 23.7 3.7 37 349-385 11-52 (60)
125 KOG3081 Vesicle coat complex C 31.2 1E+02 0.0022 30.2 5.4 45 223-272 214-258 (299)
126 PRK11447 cellulose synthase su 31.1 4.3E+02 0.0094 31.1 11.7 68 174-250 352-419 (1157)
127 PRK15174 Vi polysaccharide exp 31.0 4.4E+02 0.0096 28.9 11.1 66 178-252 323-388 (656)
128 PF13412 HTH_24: Winged helix- 30.8 1.2E+02 0.0026 20.6 4.5 33 348-385 16-48 (48)
129 cd05804 StaR_like StaR_like; a 30.1 3.2E+02 0.0068 26.6 9.1 66 174-244 149-214 (355)
130 PF04190 DUF410: Protein of un 29.7 2.4E+02 0.0052 27.2 7.9 45 281-325 190-236 (260)
131 PLN03088 SGT1, suppressor of 29.7 2.3E+02 0.0049 28.5 8.0 62 180-251 9-71 (356)
132 PF12895 Apc3: Anaphase-promot 29.3 83 0.0018 24.0 3.8 27 215-241 24-50 (84)
133 COG4105 ComL DNA uptake lipopr 29.1 3.8E+02 0.0083 25.9 8.9 37 216-252 34-70 (254)
134 PF12854 PPR_1: PPR repeat 27.8 1E+02 0.0022 19.7 3.4 27 173-199 7-33 (34)
135 PF07219 HemY_N: HemY protein 27.7 97 0.0021 25.5 4.2 33 213-245 56-88 (108)
136 COG1729 Uncharacterized protei 27.5 1.8E+02 0.0038 28.3 6.4 69 175-250 144-212 (262)
137 PF10264 Stork_head: Winged he 26.9 2.8E+02 0.006 22.0 6.2 37 348-384 28-67 (80)
138 PF08544 GHMP_kinases_C: GHMP 26.8 1.8E+02 0.0039 21.9 5.4 23 288-310 1-23 (85)
139 PF10345 Cohesin_load: Cohesin 26.4 8.5E+02 0.019 26.4 20.5 179 114-308 50-252 (608)
140 PRK09782 bacteriophage N4 rece 26.2 86 0.0019 36.3 4.7 56 214-274 42-97 (987)
141 CHL00033 ycf3 photosystem I as 26.2 4.3E+02 0.0093 22.8 10.1 68 173-247 35-103 (168)
142 PF13431 TPR_17: Tetratricopep 25.9 45 0.00097 21.4 1.4 21 217-237 14-34 (34)
143 KOG3060 Uncharacterized conser 25.7 4.7E+02 0.01 25.6 8.7 77 172-257 51-127 (289)
144 PLN03098 LPA1 LOW PSII ACCUMUL 25.7 2.3E+02 0.0049 29.9 7.1 65 173-245 75-141 (453)
145 PRK10049 pgaA outer membrane p 25.2 5E+02 0.011 29.0 10.5 68 175-251 395-462 (765)
146 cd05804 StaR_like StaR_like; a 24.2 5.9E+02 0.013 24.6 9.9 69 171-248 112-180 (355)
147 smart00668 CTLH C-terminal to 24.0 1.8E+02 0.0039 20.3 4.6 32 285-316 5-36 (58)
148 PRK10747 putative protoheme IX 23.6 1.8E+02 0.0039 29.6 6.1 34 216-249 328-361 (398)
149 PLN03218 maturation of RBCL 1; 23.1 1.3E+03 0.028 27.2 17.1 149 71-245 617-783 (1060)
150 PF09295 ChAPs: ChAPs (Chs5p-A 22.9 4.2E+02 0.0091 27.3 8.5 79 173-265 234-312 (395)
151 PRK11447 cellulose synthase su 22.3 6.2E+02 0.013 29.8 10.9 75 175-250 305-385 (1157)
152 KOG1173 Anaphase-promoting com 22.2 1E+02 0.0022 33.2 3.9 66 170-244 366-442 (611)
153 KOG1840 Kinesin light chain [C 21.9 1E+03 0.022 25.6 16.9 140 85-247 252-398 (508)
154 PF10557 Cullin_Nedd8: Cullin 21.8 3.5E+02 0.0075 20.2 6.5 55 323-385 4-61 (68)
155 KOG1840 Kinesin light chain [C 21.7 1E+03 0.022 25.5 13.3 122 147-271 214-341 (508)
156 PHA02992 hypothetical protein; 21.6 7E+02 0.015 27.8 10.0 43 284-326 69-112 (728)
157 PF10607 CLTH: CTLH/CRA C-term 21.6 2E+02 0.0044 24.4 5.2 32 284-315 4-35 (145)
158 COG1849 Uncharacterized protei 20.9 1.2E+02 0.0025 24.6 3.1 30 215-244 40-69 (90)
159 PRK14574 hmsH outer membrane p 20.4 6.5E+02 0.014 28.7 10.1 97 149-247 344-447 (822)
160 PF09339 HTH_IclR: IclR helix- 20.2 2.5E+02 0.0055 19.5 4.6 33 348-385 17-49 (52)
161 COG3197 FixS Uncharacterized p 20.1 26 0.00056 25.9 -0.6 14 257-270 3-16 (58)
162 KOG4162 Predicted calmodulin-b 20.0 2.1E+02 0.0045 32.0 5.8 60 177-245 722-783 (799)
No 1
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.1e-72 Score=553.42 Aligned_cols=382 Identities=36% Similarity=0.567 Sum_probs=341.9
Q ss_pred HHHHHHHHHHHhcCChHHHhccccccCCCcchhhHHhhhhhhhhHHHHhhhcCCCCChHHHHHHHHHHhhhcc-CCCHHH
Q 015089 14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYR-TGNLVD 92 (413)
Q Consensus 14 ~~~l~~v~~a~~~~dg~~la~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evv~~~l~~~~~~~-~~~~~~ 92 (413)
++|++++..++...||+.++...+..+.+ . ....-.+.+.+..+++... .||++++..|+++..... +.+...
T Consensus 1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~--~---~~~~~~~d~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~s 74 (394)
T KOG2688|consen 1 NDYFSQLLSAVARLDGELLAVQLSRRDGH--V---QTSRTVFDAEEERLQQFIG-KPFDTIVGLHLRVLLRVAYPCDAAS 74 (394)
T ss_pred CchHHHHHHHHHhccHHHHHHhcCCCcch--h---hcchhhcccHHHHHHhccC-CCcchhHhHHHHHHhhhccCcchhh
Confidence 47999999999999999999999998877 2 2222223355667777655 799999999999877754 456677
Q ss_pred HHHHHHHHHH-HHHHHHhcc-CccccHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhhhCC----
Q 015089 93 AYLAFEKSAN-AFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK---- 165 (413)
Q Consensus 93 a~~~~~~~~~-~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~f~~~~~d---- 165 (413)
||..+. +.+ ...+.++.. +++|++|+++++|.+++.++..++....+ ....++.+|.+++.++++|+.|.+|
T Consensus 75 a~~~~~-~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~ 153 (394)
T KOG2688|consen 75 AFSQQK-LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRAD 153 (394)
T ss_pred hhhhHH-HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccc
Confidence 777776 333 344445443 79999999999999999999999988754 2334678999999999999999999
Q ss_pred --CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHH
Q 015089 166 --GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (413)
Q Consensus 166 --~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (413)
++|++|+++++|++|+|||+++++++|++++|++++. .+..+.++.+|+|+|+||+|+++|++.||.+|+.+|.+||
T Consensus 154 ~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~-~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af 232 (394)
T KOG2688|consen 154 LEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQS-GSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF 232 (394)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhcc-ccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999987 3677889999999999999999999999999999999999
Q ss_pred HhcCccchHHHHHHHHHHHHHHhhcCCCCChhhhccccccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHh
Q 015089 244 INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKL 323 (413)
Q Consensus 244 ~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~l 323 (413)
++||.....|+++|++|+||+.|++|++|+..++++|++..|.++++|||.||+..|+.++++||.+|+++|+|++|+++
T Consensus 233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l 312 (394)
T KOG2688|consen 233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL 312 (394)
T ss_pred HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCC
Q 015089 324 ELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLE-MDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDP 402 (413)
Q Consensus 324 r~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~-~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~p 402 (413)
|.+||||||||||.++ ++++++|++.|..|+++++ .+.|.||+||||||||++|+|||||||+++++|+||++|
T Consensus 313 ~lv~yrnL~kkv~~~~-----~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~p 387 (394)
T KOG2688|consen 313 PLVVYRNLFKKVIQLW-----GKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDP 387 (394)
T ss_pred hHHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCC
Confidence 9999999999999998 4789999999999999988 458999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 015089 403 FPKLNG 408 (413)
Q Consensus 403 FP~~~~ 408 (413)
||.++.
T Consensus 388 fp~~v~ 393 (394)
T KOG2688|consen 388 FPHLVL 393 (394)
T ss_pred CCCCCC
Confidence 999864
No 2
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-62 Score=473.26 Aligned_cols=385 Identities=25% Similarity=0.409 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHhcCChHHHhccccccCCCcchhhHHhhhhh---hhhHHHHhhhcCCCCChHHHHHHHHHHhhh----cc
Q 015089 14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNV---FQDANRLIKQSDNYSPFADITVPLFRSLQH----YR 86 (413)
Q Consensus 14 ~~~l~~v~~a~~~~dg~~la~lls~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~evv~~~l~~~~~----~~ 86 (413)
++|++++.+|+..+|...|+.|++.++.. ...+...+-- .++..+..-+. +..+=++.+.-+++.... .+
T Consensus 1 nd~~~tl~~ava~~n~~~l~~cl~~~~re--~~~L~~~l~~d~k~~~~~~~~iqr-~~~~n~~~~tl~~q~~~~l~rd~d 77 (413)
T COG5600 1 NDMANTLLDAVAHGNSSHLTKCLSQNGRE--IAILGKVLTGDSKIDAKLKETIQR-PFGRNDTAVTLVLQKFLNLGRDKD 77 (413)
T ss_pred ChHHHHHHHHHhcCchhhhhhhhccChhH--HHHHhhhcccccCchhhhcceeec-cccCCchhhhhhhHHHHHhhcCCC
Confidence 36899999999999999999999998754 3223221110 11111111110 111224556555554333 44
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHH----HHHH---hhC-CCChhHHHHHHHHHHHH
Q 015089 87 TGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERA----DREL---ASN-GKSPEKLKAAGSFLMKV 158 (413)
Q Consensus 87 ~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~----D~~~---~~~-~~~~~~le~~a~~l~~~ 158 (413)
+++ ...++...++...++..+......|+.-....+.+.+...+..+ +... ..+ ....+.++++++.|+++
T Consensus 78 p~s-kr~sel~q~~yk~lt~~~~~~~~~~l~~lv~~~~R~~~~~~~~l~~~~kq~~~~l~~~s~~~~d~l~~~sr~l~R~ 156 (413)
T COG5600 78 PWS-KRSSELLQELYKNLTAELSYSSAPHLEVLVKNAVRMLGREIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRM 156 (413)
T ss_pred hHh-hhhHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHhcccchhhHhhHHHHHHHHHHH
Confidence 433 33344444445555555544455676665555555444443333 3222 111 12367999999999999
Q ss_pred HHhhhCC------CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcCh
Q 015089 159 FGVLAGK------GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENF 232 (413)
Q Consensus 159 f~~~~~d------~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~ 232 (413)
|+.|.+| .+||+|+|+++|+||++||+++++++|+|++|+.+..++|+...|+++|+|+|+||+|++|+.++++
T Consensus 157 Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~ 236 (413)
T COG5600 157 FNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENF 236 (413)
T ss_pred HHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhH
Confidence 9999999 3799999999999999999999999999999999987788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCC-CCChhhhcccc-ccchHHHHHHHHhCCHHHHHHHHHHcHHH
Q 015089 233 PAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGI-LPKDWLLEKYN-LVEYSNIVQALRRGDLRLLRHALEEHEDQ 310 (413)
Q Consensus 233 ~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~-~P~~~ll~~~~-l~~y~~L~~air~Gdl~~f~~~l~~~~~~ 310 (413)
.+|+-||.+||..||.--.+|+++|+.|+||.+|+.|+ .|.+.++++|+ ...|.+|++|||.||+..|+.++++||.+
T Consensus 237 heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ner~ 316 (413)
T COG5600 237 HEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERK 316 (413)
T ss_pred HHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchHHHHhccccchhHHHHHHHHcCCHHHHHHHHHHhHHH
Confidence 99999999999999988889999999999999999875 67888999999 55799999999999999999999999999
Q ss_pred HHHhcHHHHH-HHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC--CCHHHHHHHHHHHHHcCceeEE
Q 015089 311 FLRSGVYLVL-EKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD--MDVDEVECIVAILIHKNLVKGY 387 (413)
Q Consensus 311 f~k~glylll-e~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~--~d~~evEcila~LI~~G~IkGy 387 (413)
|.++|+|+.| ++.+.+|||||+||+|... ++.+++|++.+..++++++.| .+.++|||+||+||.+|++|||
T Consensus 317 ~~~~~l~ltl~~~~~~V~~RNL~rk~w~~~-----~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgY 391 (413)
T COG5600 317 FAKRGLYLTLLAHYPLVCFRNLFRKIWRLH-----GKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGY 391 (413)
T ss_pred HHHcchHHHHHhhccHHHHHHHHHHHHhhc-----cccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhhe
Confidence 9999999976 7899999999999999987 577999999999999999877 7899999999999999999999
Q ss_pred eecCCeEEEEecCCCCCCCC
Q 015089 388 FAHKSKVVVLSKQDPFPKLN 407 (413)
Q Consensus 388 Is~~~~~vVlSk~~pFP~~~ 407 (413)
|||+.++||+||++|||...
T Consensus 392 is~s~~~vV~sk~~pFp~~V 411 (413)
T COG5600 392 ISHSRRTVVFSKKDPFPVSV 411 (413)
T ss_pred ecccceEEEEecCCCCCCCC
Confidence 99999999999999999764
No 3
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=295.31 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=253.3
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 015089 72 ADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAA 151 (413)
Q Consensus 72 ~evv~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~ 151 (413)
.+.+...+.++..++++.+.+|-....+.+..+... ...++..+...+++...++.. ...++...
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~-----nrRtlD~i~ak~~fy~~l~~E----------~~~~l~~~ 188 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQ-----NRRTLDLIAAKLYFYLYLSYE----------LEGRLADI 188 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHHHHHHH----------hhcchHHH
Confidence 466667777788899999999998888877665443 345888888877776665531 23468888
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcC
Q 015089 152 GSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNEN 231 (413)
Q Consensus 152 a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~ 231 (413)
.++++...++....++ ..|.-.++|+|++.|...+-++.+.+++ +.+.+| +....+++.+|.||+||+.++++|
T Consensus 189 rs~l~~~lrtAtLrhd-~e~qavLiN~LLr~yL~n~lydqa~~lv---sK~~~p--e~~snne~ARY~yY~GrIkaiqld 262 (493)
T KOG2581|consen 189 RSFLHALLRTATLRHD-EEGQAVLINLLLRNYLHNKLYDQADKLV---SKSVYP--EAASNNEWARYLYYLGRIKAIQLD 262 (493)
T ss_pred HHHHHHHHHHhhhcCc-chhHHHHHHHHHHHHhhhHHHHHHHHHh---hcccCc--cccccHHHHHHHHHHhhHHHhhcc
Confidence 8999999888765422 4566789999999999999999999998 444455 466788999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHhhcCCCCChhhhcccc----ccchHHHHHHHHhCCHHHHHHHHHH
Q 015089 232 FPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDWLLEKYN----LVEYSNIVQALRRGDLRLLRHALEE 306 (413)
Q Consensus 232 ~~~A~~~L~~A~~~c~~~-~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~----l~~y~~L~~air~Gdl~~f~~~l~~ 306 (413)
|..|.++|.+|.+..|++ ..++++++-|+.|.+++++|.+|.+..+.+.+ |.+|..|++|||.||+++|++++++
T Consensus 263 YssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq 342 (493)
T KOG2581|consen 263 YSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQ 342 (493)
T ss_pred hhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999964 46899999999999999999999999999985 5789999999999999999999999
Q ss_pred cHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeE
Q 015089 307 HEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 386 (413)
Q Consensus 307 ~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkG 386 (413)
+.+.|..+|+|.++.|||++|+++.+|+|.+.| +||++.+|+..|.+. +++++|.|++..|.+|.|+|
T Consensus 343 ~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsY--------SRISl~DIA~kL~l~----Seed~EyiVakAIRDGvIea 410 (493)
T KOG2581|consen 343 FKDKFQADGTYTLIVRLRHNVIKTGIRKISLSY--------SRISLQDIAKKLGLN----SEEDAEYIVAKAIRDGVIEA 410 (493)
T ss_pred HHHHHhhCCcchHHHHHHHHHHHHhhhheeeee--------eeccHHHHHHHhcCC----CchhHHHHHHHHHHhcccee
Confidence 999999999999999999999999999999998 999999999999864 56679999999999999999
Q ss_pred EeecCCeEEE
Q 015089 387 YFAHKSKVVV 396 (413)
Q Consensus 387 yIs~~~~~vV 396 (413)
.|+|+.++++
T Consensus 411 ~Id~~~g~m~ 420 (493)
T KOG2581|consen 411 KIDHEDGFMQ 420 (493)
T ss_pred eeccccCcee
Confidence 9999999775
No 4
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2e-21 Score=182.72 Aligned_cols=230 Identities=17% Similarity=0.235 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhhhCCC-----CchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhc-cCCCCCCCCCccchhhhhhhh
Q 015089 150 AAGSFLMKVFGVLAGKG-----SKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIET-ARIFDFEEFPKRDKVTYMYYT 222 (413)
Q Consensus 150 ~~a~~l~~~f~~~~~d~-----~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~-~~~p~~~~~p~~~~v~y~YY~ 222 (413)
++..++..+..+|.+|+ .|...++.+..+.+++|...++-.-.+-++ +++.. +.+|+ |.... +.|.|.
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH----PlImG-vIRECG 237 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH----PLIMG-VIRECG 237 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc----hHHHh-HHHHcC
Confidence 34455666667888752 455888999999999999999988888887 33332 23775 77777 689999
Q ss_pred HHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcC-CCCChhhhcc--cc----ccchHHHHHHHHhC
Q 015089 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEK--YN----LVEYSNIVQALRRG 295 (413)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G-~~P~~~ll~~--~~----l~~y~~L~~air~G 295 (413)
|++++.+++|.+|+..|.+||+++.+++...|..+|+|||.++|++. .+.+++.-+. |. +..+.+++.|+...
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999974 5777776552 32 45689999999999
Q ss_pred CHHHHHHHHHHcH-----HHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHH
Q 015089 296 DLRLLRHALEEHE-----DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDE 370 (413)
Q Consensus 296 dl~~f~~~l~~~~-----~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~e 370 (413)
|+..|++.|..|+ +.|++.++-.++.++|..|+..|+|. | ++|.+..+..+|+ ++..|
T Consensus 318 dI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkP----Y--------t~i~Ipfis~~Ln-----v~~~d 380 (440)
T KOG1464|consen 318 DIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKP----Y--------TNIGIPFISKELN-----VPEAD 380 (440)
T ss_pred cHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcc----c--------cccCchhhHhhcC-----CCHHH
Confidence 9999999999986 49999999999999999999999997 4 7888999999998 78999
Q ss_pred HHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 371 VECIVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 371 vEcila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
||.+++++|.+.-|+|.|+..++++.+.|..
T Consensus 381 V~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~ 411 (440)
T KOG1464|consen 381 VESLLVSCILDDTIDGRIDEVNQYLELDKSK 411 (440)
T ss_pred HHHHHHHHHhccccccchHHhhhHhccCccC
Confidence 9999999999999999999999999887653
No 5
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.62 E-value=8.2e-15 Score=120.96 Aligned_cols=103 Identities=31% Similarity=0.451 Sum_probs=95.3
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHc-HHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 015089 284 EYSNIVQALRRGDLRLLRHALEEH-EDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 362 (413)
Q Consensus 284 ~y~~L~~air~Gdl~~f~~~l~~~-~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~ 362 (413)
+|.+|++|+++||+..|.+.++++ +.++.+.++...++.++..+.++.+++++..+ ++|+++.++.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y--------~~i~~~~ia~~l~-- 71 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPY--------SSISISEIAKALQ-- 71 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC---------SEEEHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHhc--
Confidence 588999999999999999999999 88888889999999999999999999999877 9999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEec
Q 015089 363 EMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 399 (413)
Q Consensus 363 ~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk 399 (413)
++.+|+|+++++||.+|.|+|+|+|.+++|+++|
T Consensus 72 ---~~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 72 ---LSEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp ---CCHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred ---cchHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 5789999999999999999999999999999986
No 6
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-06 Score=84.91 Aligned_cols=217 Identities=15% Similarity=0.223 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC--
Q 015089 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN-- 247 (413)
Q Consensus 170 ~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~-- 247 (413)
-++.++-...-++|..+|..+-|+.++--.++. +-.+...|.+-...|+--...+|=.-+||..++.|.-.=+ .|-
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~-ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL-~~~d~ 189 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSM-LDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYL-GCSDI 189 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-ccccc
Confidence 588889999999999999999999998655542 1111122322222343334555555667776666544332 233
Q ss_pred ccchHHHHHHHHHHHHHHhhcCC-CCChhh-hcccccc-------c-hHHHHHHHHhCCHHHHHHHHHHcHH-HHHHhcH
Q 015089 248 PQSEANIRMILKYLIPVKLSIGI-LPKDWL-LEKYNLV-------E-YSNIVQALRRGDLRLLRHALEEHED-QFLRSGV 316 (413)
Q Consensus 248 ~~~~~nk~~IL~yLIpv~Ll~G~-~P~~~l-l~~~~l~-------~-y~~L~~air~Gdl~~f~~~l~~~~~-~f~k~gl 316 (413)
.+.+.-.++-+-+...+.-++|+ +-++.. +..+.+. + -.++..|...||+.+|++....+.. .-+...-
T Consensus 190 ~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e 269 (380)
T KOG2908|consen 190 DDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNE 269 (380)
T ss_pred cccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHH
Confidence 11222333344455555555664 666654 4443221 2 4689999999999999998877644 3333444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEE
Q 015089 317 YLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVV 396 (413)
Q Consensus 317 yllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vV 396 (413)
-.+.+|++.+|+-++ +|. .|.....||++.|+++.+ ++.+|||-++.+.+..|+|||.|+...++|-
T Consensus 270 ~~L~qKI~LmaLiEi---~F~-----rpa~~R~lsf~~Ia~~tk-----ip~~eVE~LVMKAlslgLikG~Idqv~~~v~ 336 (380)
T KOG2908|consen 270 DFLLQKIRLLALIEI---TFS-----RPANERTLSFKEIAEATK-----IPNKEVELLVMKALSLGLIKGSIDQVEGVVY 336 (380)
T ss_pred HHHHHHHHHHHHHHH---Hhc-----CcchhccccHHHHHHHhC-----CCHHHHHHHHHHHHhccceeeeecccccEEE
Confidence 446677777775443 332 233457899999999998 7899999999999999999999999999887
Q ss_pred EecCC
Q 015089 397 LSKQD 401 (413)
Q Consensus 397 lSk~~ 401 (413)
.|-..
T Consensus 337 ~swvq 341 (380)
T KOG2908|consen 337 MSWVQ 341 (380)
T ss_pred Eeccc
Confidence 77543
No 7
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-07 Score=90.45 Aligned_cols=213 Identities=15% Similarity=0.210 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 169 k~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
|.-+..+--+.-|.||.++|..-++.=+-+-..+... -..|...|.+----.|.+|+-+.||..|+.+|.+||+-.+.
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana--iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA--IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc--cccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 4455567778889999999999999877555443211 12456777899999999999999999999999999998775
Q ss_pred cch-HHHHHHHHHHHHHHhhcCCCCC-------hhhhccc---cccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHH
Q 015089 249 QSE-ANIRMILKYLIPVKLSIGILPK-------DWLLEKY---NLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVY 317 (413)
Q Consensus 249 ~~~-~nk~~IL~yLIpv~Ll~G~~P~-------~~ll~~~---~l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~gly 317 (413)
-.. .+--..|||++.|++.++..-. +..++ | ++..+.-+.+|.++-+++.|+.+|.+++.++..+-+-
T Consensus 242 ~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 242 LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 444 4667789999999999875322 22222 3 2456788999999999999999999987655444331
Q ss_pred H-HHHHh-HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEE
Q 015089 318 L-VLEKL-ELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVV 395 (413)
Q Consensus 318 l-lle~l-r~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~v 395 (413)
- -+..| ..+.=.|++|-| ...++|-++.|...+. +|...||--++.||-+...-|-++|..+|+
T Consensus 321 r~Hl~~Lyd~lLEknl~riI---------EPyS~Vei~hIA~~IG-----l~~~~VEkKLsqMILDKkf~G~LDQg~g~L 386 (411)
T KOG1463|consen 321 RSHLQSLYDNLLEKNLCRII---------EPYSRVEISHIAEVIG-----LDVPQVEKKLSQMILDKKFYGTLDQGEGCL 386 (411)
T ss_pred HHHHHHHHHHHHHHhHHHHc---------CchhhhhHHHHHHHHC-----CCcHHHHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 11111 111223455532 1358888898888887 578999999999999999999999999998
Q ss_pred EEe
Q 015089 396 VLS 398 (413)
Q Consensus 396 VlS 398 (413)
++=
T Consensus 387 iv~ 389 (411)
T KOG1463|consen 387 IVF 389 (411)
T ss_pred EEe
Confidence 763
No 8
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.6e-05 Score=74.07 Aligned_cols=212 Identities=16% Similarity=0.239 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 169 k~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
|..+..+--+.-|.|.+++|...++.=+.+-..... --..|..-+...---.|.+++.+.||..|+.+|.+||+-.+.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~An--s~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLAN--SAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh--ccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 445556777788999999998888866644443211 012355556678888999999999999999999999997764
Q ss_pred cch-HHHHHHHHHHHHHHhhcCCCCChh-hh------cccc---ccchHHHHHHHHhCCHHHHHHHHHHcHH-----HHH
Q 015089 249 QSE-ANIRMILKYLIPVKLSIGILPKDW-LL------EKYN---LVEYSNIVQALRRGDLRLLRHALEEHED-----QFL 312 (413)
Q Consensus 249 ~~~-~nk~~IL~yLIpv~Ll~G~~P~~~-ll------~~~~---l~~y~~L~~air~Gdl~~f~~~l~~~~~-----~f~ 312 (413)
-.. .---..|+|++.-++.++..-.-. ++ +.|. +..+..+.+|.-+-++..|+.+|+++++ .|+
T Consensus 239 l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~i 318 (421)
T COG5159 239 LKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFI 318 (421)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHH
Confidence 332 334567999999988876543222 22 2232 3346778899999999999999999754 677
Q ss_pred HhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCC
Q 015089 313 RSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 392 (413)
Q Consensus 313 k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~ 392 (413)
++++--+- -.+.=.|++|-| ..-+++-++.|...+. .|...||--+..||-+....|-++|++
T Consensus 319 RsHl~~LY---D~LLe~Nl~kii---------EPfs~VeishIa~viG-----ldt~qvEgKLsqMILDKifyG~LDqg~ 381 (421)
T COG5159 319 RSHLQYLY---DVLLEKNLVKII---------EPFSVVEISHIADVIG-----LDTNQVEGKLSQMILDKIFYGTLDQGD 381 (421)
T ss_pred HHHHHHHH---HHHHHhhhhhhc---------CcceeeehhHHHHHhc-----ccHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 77652111 111224666643 1347888888888887 578999999999999999999999999
Q ss_pred eEEEEec
Q 015089 393 KVVVLSK 399 (413)
Q Consensus 393 ~~vVlSk 399 (413)
+|+.+--
T Consensus 382 gcLivy~ 388 (421)
T COG5159 382 GCLIVYG 388 (421)
T ss_pred ceEEEeC
Confidence 9987743
No 9
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.38 E-value=0.0002 Score=71.00 Aligned_cols=180 Identities=16% Similarity=0.244 Sum_probs=124.4
Q ss_pred CCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc-hHH-HHHHHHHHHHHHh-hcCCC---CChh---hhccc
Q 015089 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-EAN-IRMILKYLIPVKL-SIGIL---PKDW---LLEKY 280 (413)
Q Consensus 210 ~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-~~n-k~~IL~yLIpv~L-l~G~~---P~~~---ll~~~ 280 (413)
.|.+....|.||.|.++.=..+|+.|-..|..+.-. |..+ ... .+.-=+|+. ++| +.|++ |+-. ..+-+
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~-Pa~~vs~~hlEaYkkylL-vsLI~~GK~~ql~k~ts~~~~r~~ 254 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT-PAMAVSHIHLEAYKKYLL-VSLILTGKVFQLPKNTSQNAGRFF 254 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHH-HHhhhcCceeeccccchhhhHHhc
Confidence 466888899999999999999999999999888752 3211 111 111223333 333 46864 5543 22212
Q ss_pred -ccc-chHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 015089 281 -NLV-EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKA 358 (413)
Q Consensus 281 -~l~-~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~a 358 (413)
+.. +|.++..++-.+.....+..+.+|.+.|.|++---++..+-...+..=++|.-... ..+++++|+.-
T Consensus 255 K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF--------~sLsL~dIA~~ 326 (422)
T KOG2582|consen 255 KPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTF--------LSLSLSDIASR 326 (422)
T ss_pred ccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHH
Confidence 233 79999999999999999999999999999996544443333333333333333333 67899999997
Q ss_pred HhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCCCCCCC
Q 015089 359 LKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLN 407 (413)
Q Consensus 359 l~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~pFP~~~ 407 (413)
.++. ..+|||-.+..+|.+|-|-..|+ +.|++ +.||=|-.+
T Consensus 327 vQLa----~~qevek~Ilqmie~~~i~a~iN---G~v~f-~~n~e~~~S 367 (422)
T KOG2582|consen 327 VQLA----SAQEVEKYILQMIEDGEIFASIN---GMVFF-TDNPEKYNS 367 (422)
T ss_pred HHhc----chHHHHHHHHHHhccCceEEEec---ceEEE-ecCcccCCC
Confidence 6654 68999999999999999999996 76665 345555443
No 10
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.04 E-value=3.2e-05 Score=61.95 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=55.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEe
Q 015089 319 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 398 (413)
Q Consensus 319 lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlS 398 (413)
+.++++..+++.+.+. | .+|+++.+...+. ++.+++|-.+.++|.+|.|+|.|++..+++++.
T Consensus 6 l~~~~~~~~l~~l~~~----y--------~~i~~~~i~~~~~-----l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~ 68 (88)
T smart00088 6 LQRKIRLTNLLQLSEP----Y--------SSISLSDLAKLLG-----LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFE 68 (88)
T ss_pred HHHHHHHHHHHHHhHH----h--------ceeeHHHHHHHhC-----cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEEC
Confidence 4456666666666653 4 8899999999997 578899999999999999999999999999998
Q ss_pred cCC
Q 015089 399 KQD 401 (413)
Q Consensus 399 k~~ 401 (413)
+..
T Consensus 69 ~~~ 71 (88)
T smart00088 69 EVD 71 (88)
T ss_pred CCc
Confidence 764
No 11
>smart00753 PAM PCI/PINT associated module.
Probab=98.04 E-value=3.2e-05 Score=61.95 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=55.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEe
Q 015089 319 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 398 (413)
Q Consensus 319 lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlS 398 (413)
+.++++..+++.+.+. | .+|+++.+...+. ++.+++|-.+.++|.+|.|+|.|++..+++++.
T Consensus 6 l~~~~~~~~l~~l~~~----y--------~~i~~~~i~~~~~-----l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~ 68 (88)
T smart00753 6 LQRKIRLTNLLQLSEP----Y--------SSISLSDLAKLLG-----LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFE 68 (88)
T ss_pred HHHHHHHHHHHHHhHH----h--------ceeeHHHHHHHhC-----cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEEC
Confidence 4456666666666653 4 8899999999997 578899999999999999999999999999998
Q ss_pred cCC
Q 015089 399 KQD 401 (413)
Q Consensus 399 k~~ 401 (413)
+..
T Consensus 69 ~~~ 71 (88)
T smart00753 69 EVD 71 (88)
T ss_pred CCc
Confidence 764
No 12
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=97.47 E-value=0.035 Score=54.72 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=111.8
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc-hH----HHHHHHHHHHHHHhh-cC---CCCChhhhccccccchHH
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-EA----NIRMILKYLIPVKLS-IG---ILPKDWLLEKYNLVEYSN 287 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-~~----nk~~IL~yLIpv~Ll-~G---~~P~~~ll~~~~l~~y~~ 287 (413)
++.=...+.-.....-.+|.+.+++=+..+..+. .. -.|.|...+.-=+.. .. .+|+-..|++- ...+
T Consensus 166 el~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d---~i~q 242 (378)
T KOG2753|consen 166 ELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGD---LIHQ 242 (378)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccc---hHHH
Confidence 3333333333333335666666665555444322 11 223333333211222 11 35555555542 2567
Q ss_pred HHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH--HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC
Q 015089 288 IVQALRRGDLRLLRHALEEHEDQFLRSGVYL--VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD 365 (413)
Q Consensus 288 L~~air~Gdl~~f~~~l~~~~~~f~k~glyl--lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~ 365 (413)
|..-.-+|-+..|-+..++|..+.-..|+-. ++.|+|.+.+-.|-- .+..||++.++.-|+
T Consensus 243 LL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~------------es~eisy~~l~k~Lq----- 305 (378)
T KOG2753|consen 243 LLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQNMAKMRLLTLMSLAE------------ESNEISYDTLAKELQ----- 305 (378)
T ss_pred HHHHHHhcchHHHHHHHHhChHHHHHhcccHHHHHHHHHHHHHHHHhc------------cCCCCCHHHHHHHhc-----
Confidence 7788889999999999999999777778744 778888887655433 247899999999998
Q ss_pred CCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC
Q 015089 366 MDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 366 ~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
+++||||-.+...|.-|+|.|+|+.-+|+|++|..
T Consensus 306 I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~ 340 (378)
T KOG2753|consen 306 INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSS 340 (378)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehh
Confidence 78999999999999999999999999999999865
No 13
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=0.0087 Score=58.72 Aligned_cols=238 Identities=16% Similarity=0.239 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHHHHHHhhhCCC-Cch---hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhh
Q 015089 145 PEKLKAAGSFLMKVFGVLAGKG-SKR---VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMY 220 (413)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~d~-~Kk---~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~Y 220 (413)
.+..+++++.|..+ -.|+ .|. ..-+-+.-.+-+.|.+.+....+.-++.. +++|--+...-.-++.|.-
T Consensus 116 Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inR---aSil~a~~~Ne~Lqie~kv 188 (399)
T KOG1497|consen 116 EQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINR---ASILQAESSNEQLQIEYKV 188 (399)
T ss_pred hhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH---HHHhhhcccCHHHHHHHHH
Confidence 35667777665433 1121 111 22244455566788999988888877732 2343222212233578888
Q ss_pred hhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChh-hhcc------------ccccchHH
Q 015089 221 YTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDW-LLEK------------YNLVEYSN 287 (413)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~-ll~~------------~~l~~y~~ 287 (413)
+-+|+.=..++|-+|-+...+-...- .-...-++.-|+-.+.|.++.+-=|-+. +|.. |++.+=.=
T Consensus 189 c~ARvlD~krkFlEAAqrYyels~~k-i~~e~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKmy 267 (399)
T KOG1497|consen 189 CYARVLDYKRKFLEAAQRYYELSQRK-IVDESERLEALKKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKMY 267 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHhHhheeecCCChHHHHHHHHHhcCcccccccchHHHHHHH
Confidence 99999989999999888776433211 1112335555666666655554333332 1110 11211123
Q ss_pred HHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCC
Q 015089 288 IVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMD 367 (413)
Q Consensus 288 L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d 367 (413)
+.+-|+.-++..|...|..|+.-=..+|.-.+ -|.+.=-|++- +...| +-|+++.+.+-|. +|
T Consensus 268 l~riI~k~el~ef~~~L~pHQka~~~dgssil---~ra~~EhNlls-~Skly--------~nisf~~Lg~ll~-----i~ 330 (399)
T KOG1497|consen 268 LERIIRKEELQEFEAFLQPHQKAHTMDGSSIL---DRAVIEHNLLS-ASKLY--------NNISFEELGALLK-----ID 330 (399)
T ss_pred HHHHhcchhHHHHHHHhcchhhhcccCcchhh---hhHHHHHhHHH-HHHHH--------HhccHHHHHHHhC-----CC
Confidence 56778999999999999999875434443211 11112223332 44555 6688888887776 79
Q ss_pred HHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCCCCCCC
Q 015089 368 VDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLN 407 (413)
Q Consensus 368 ~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~pFP~~~ 407 (413)
.+-+|-|.|+||-+|.+.|+|+...+++-+-..++.|...
T Consensus 331 ~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l~~wd 370 (399)
T KOG1497|consen 331 AEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREELPQWD 370 (399)
T ss_pred HHHHHHHHHHHHhHHHhccchHhhcceEeecchhhhhhhh
Confidence 9999999999999999999999999999998888888754
No 14
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=96.96 E-value=0.18 Score=51.86 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 168 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 168 Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
|..| ||=...|+|++.-+|.+..+-.++..|+-..---+...|.. .|+..||.|=-||.-++|.+|-..|+..+..-.
T Consensus 118 ~~LG-YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~-~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 118 KMLG-YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC-HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHhh-HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch-heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 45566788999999999999988888764321122333434 459999999999999999999999999984222
Q ss_pred ccc-------------hHHHHHHHHHHHHHHhhc-CCCCChhhhccccc-cchHHHHHHHHhCCHHHHHHHHHHcHHH--
Q 015089 248 PQS-------------EANIRMILKYLIPVKLSI-GILPKDWLLEKYNL-VEYSNIVQALRRGDLRLLRHALEEHEDQ-- 310 (413)
Q Consensus 248 ~~~-------------~~nk~~IL~yLIpv~Ll~-G~~P~~~ll~~~~l-~~y~~L~~air~Gdl~~f~~~l~~~~~~-- 310 (413)
+.. .+.-.+..-.|.-|.-+. +++|..-. .. + ..|.+=...+.+||+..|++....--..
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~-~~--lkeky~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESIS-SQ--LKEKYGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHH-HH--HHHHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 111 122333333333333332 34443221 11 1 2377777779999999999998853221
Q ss_pred ------------------HHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHH
Q 015089 311 ------------------FLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVE 372 (413)
Q Consensus 311 ------------------f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evE 372 (413)
-.++.+=+.++-.+..-...-+|....+| +.||++.++.-+. +|++++-
T Consensus 273 sp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLY--------tti~l~KLA~fl~-----vd~~~lr 339 (404)
T PF10255_consen 273 SPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKLY--------TTIPLEKLASFLD-----VDEEELR 339 (404)
T ss_pred CCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhh--------cCCCHHHHHHHcC-----CCHHHHH
Confidence 22223333444444444444455555567 8999999777664 6788777
Q ss_pred HHHHHHH
Q 015089 373 CIVAILI 379 (413)
Q Consensus 373 cila~LI 379 (413)
..|...=
T Consensus 340 ~~Ll~~K 346 (404)
T PF10255_consen 340 SQLLCFK 346 (404)
T ss_pred HHHHHHH
Confidence 7666554
No 15
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.27 Score=48.73 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=120.0
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCC--------CCChhhhcc-ccccchHH
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGI--------LPKDWLLEK-YNLVEYSN 287 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~--------~P~~~ll~~-~~l~~y~~ 287 (413)
+|+=|.|.+.|.-.||++|-..|..+.......-.---..+..|-|-++|+.=. +-.+++++. .++..-.+
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q 261 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQ 261 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHH
Confidence 689999999999999999999999998766543333345566788888887422 222333332 12333456
Q ss_pred HHHHHHhCCHHHHHHHHHHcH------HHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 015089 288 IVQALRRGDLRLLRHALEEHE------DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 361 (413)
Q Consensus 288 L~~air~Gdl~~f~~~l~~~~------~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~ 361 (413)
+..++=.-|...|-..|...+ ++|+..+.-.-+.-+|..||-.++-. | ..++++..+.++.
T Consensus 262 ~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLES----Y--------rsl~l~~MA~aFg- 328 (393)
T KOG0687|consen 262 LLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLES----Y--------RSLTLESMAKAFG- 328 (393)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHhC-
Confidence 667777788888888775442 24444433334566788888777765 3 5678999999998
Q ss_pred ccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEec
Q 015089 362 LEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 399 (413)
Q Consensus 362 ~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk 399 (413)
++.+-++.=|+..|..|.+...|+..+++|....
T Consensus 329 ----VSVefiDreL~rFI~~grL~ckIDrVnGVVEtNr 362 (393)
T KOG0687|consen 329 ----VSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNR 362 (393)
T ss_pred ----chHHHHHhHHHHhhccCceeeeeecccceeecCC
Confidence 6788899999999999999999999999887654
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.73 E-value=0.017 Score=36.89 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=29.0
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.+.|++|.+++..++|.+|.+++.+|++.+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46899999999999999999999999999885
No 17
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.53 Score=46.06 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=116.6
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhc-C-------CCCChhhhcccc----cc
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSI-G-------ILPKDWLLEKYN----LV 283 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~-G-------~~P~~~ll~~~~----l~ 283 (413)
=+|+=|.|.+.|.-.+|++|-..|..++......-.---..+..|.|.++++. . .+-++++|.--+ +.
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~ 271 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLG 271 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhh
Confidence 47999999999999999999999999987665444444567888999998884 1 234444444322 22
Q ss_pred chHHHHHHHHhCCHHH-HHHHHHHc-----HHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 015089 284 EYSNIVQALRRGDLRL-LRHALEEH-----EDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVK 357 (413)
Q Consensus 284 ~y~~L~~air~Gdl~~-f~~~l~~~-----~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~ 357 (413)
....++.++=.-|..+ |...+.-+ .+.|+-++.-+.+.-+|.-||-.|+.. | ..++++..+.
T Consensus 272 sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLES----Y--------r~lsl~sMA~ 339 (412)
T COG5187 272 SLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLES----Y--------RLLSLESMAQ 339 (412)
T ss_pred hHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH----H--------HHhhHHHHHH
Confidence 2345555555566663 33333322 235666555555556666666666654 3 4568898888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEec
Q 015089 358 ALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 399 (413)
Q Consensus 358 al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk 399 (413)
++. ++.+-++.=|+.-|-+|.+.-.|++.+++|...+
T Consensus 340 tFg-----VSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnr 376 (412)
T COG5187 340 TFG-----VSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNR 376 (412)
T ss_pred HhC-----ccHHHHhhhHHhhCCCCceeeeeecccceEeccC
Confidence 887 6788899999999999999999999999876543
No 18
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.091 Score=51.83 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=74.7
Q ss_pred HHHHHHH-HhCCHHHHHHHHHHcHH-----HHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 015089 286 SNIVQAL-RRGDLRLLRHALEEHED-----QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKAL 359 (413)
Q Consensus 286 ~~L~~ai-r~Gdl~~f~~~l~~~~~-----~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al 359 (413)
.+++.|+ -.-|..+=.+.|.+-|+ +|+-.-+-..+|..|.+++-...|. + ..|+++.++..|
T Consensus 292 teFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRI----H--------qcIti~mLA~kL 359 (432)
T KOG2758|consen 292 TEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRI----H--------QCITIDMLADKL 359 (432)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH----H--------HheeHHHHHHHh
Confidence 3444443 23455555555655443 5554444557889999888777763 3 678999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 360 KWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 360 ~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
+ ++.+|+||.++|||..-.|.++|+.+.+.||...+.
T Consensus 360 n-----m~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~ 396 (432)
T KOG2758|consen 360 N-----MDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPT 396 (432)
T ss_pred c-----CCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCC
Confidence 8 689999999999999999999999999999987653
No 19
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.57 E-value=1.2 Score=43.37 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+..+++.....++......++ +....--+...+-.+|.++++++.+-.++..+-...... .-.+-..-.|..-.|.+
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~ 205 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILC 205 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHH
Confidence 466777777777766655554 445556777788899999999999999986553321100 00111122356667888
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChhhhccccccchHHHHHHHHhCCHHHHHHHHH
Q 015089 226 EVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALE 305 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~l~~y~~L~~air~Gdl~~f~~~l~ 305 (413)
++..+|+..|.+.|...-..||.=. --+.+ .--..|++|++.||...|.+++.
T Consensus 206 ~L~~~D~v~A~~~~~~~~~~~~~F~-------------------------~s~E~--~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 206 HLAMGDYVAARKALERYCSQDPSFA-------------------------SSREY--KFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHTT-HHHHHHHHHHHGTTSTTST-------------------------TSHHH--HHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC-------------------------CcHHH--HHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998888777765211 10111 11357999999999999999999
Q ss_pred HcHH
Q 015089 306 EHED 309 (413)
Q Consensus 306 ~~~~ 309 (413)
++..
T Consensus 259 ~~d~ 262 (282)
T PF14938_consen 259 EYDS 262 (282)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 8754
No 20
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.51 E-value=1.9 Score=44.08 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=117.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh--hhhhhHHHhhhhcChHHHHHHHHHH-HHhcCccchHHHH
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT--YMYYTGRLEVFNENFPAADQKLSYA-LINCNPQSEANIR 255 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~--y~YY~Gr~~~~~~~~~~A~~~L~~A-~~~c~~~~~~nk~ 255 (413)
++++-.-++|+.-.-+.+..-++. |. ..-..++.|. -.-+.|.-.+..++|..|-.++-.| +.+|.....-+..
T Consensus 193 ~i~VSI~~~nw~hv~sy~~~A~st--~~-~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtps 269 (466)
T KOG0686|consen 193 LILVSIYMGNWGHVLSYISKAEST--PD-ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPS 269 (466)
T ss_pred HHHHHHhhcchhhhhhHHHHHHhC--ch-hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecch
Confidence 344444456766666655332222 11 0111233332 4456788888888999988887666 4677733322333
Q ss_pred HHHHHHHHHHhhcCCCCChhhh---------ccc-ccc-chHHHHHHHHhCCHHHHHHHHHHcH-----HHHHHhcHHHH
Q 015089 256 MILKYLIPVKLSIGILPKDWLL---------EKY-NLV-EYSNIVQALRRGDLRLLRHALEEHE-----DQFLRSGVYLV 319 (413)
Q Consensus 256 ~IL~yLIpv~Ll~G~~P~~~ll---------~~~-~l~-~y~~L~~air~Gdl~~f~~~l~~~~-----~~f~k~glyll 319 (413)
-|-.|--.|.|- .+-..++. ..| ++. ...+++...-.+-....-+.|++.+ +.|+..++-.+
T Consensus 270 dv~iYggLcALA--tfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~L 347 (466)
T KOG0686|consen 270 DVAIYGGLCALA--TFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNL 347 (466)
T ss_pred hhHHHHhhHhhc--cCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHH
Confidence 333443333222 11111221 111 122 2456666666776666666666654 46777777667
Q ss_pred HHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEE
Q 015089 320 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL 397 (413)
Q Consensus 320 le~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVl 397 (413)
.+++|.-+....+. ....++++.++.|++ .+..++|.=|-.||.+|.|+|.|+..++++-.
T Consensus 348 y~~IR~r~llqy~~------------py~s~~m~~mA~af~-----~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~ 408 (466)
T KOG0686|consen 348 YSLIRNRALLQYLS------------PYSSADMSKMAEAFN-----TSVAILESELLELILEGKISGRIDSHNKILYA 408 (466)
T ss_pred HHHHHHhhHHHhcC------------ccccchHHHHHHHhc-----ccHHHHHHHHHHHHHccchheeeccccceeee
Confidence 77776644333332 237889999999998 57899999999999999999999887776543
No 21
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.44 E-value=0.12 Score=38.87 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=50.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
|..+|++.++++.+...+..+-.. .| +.+..++..|.+++..++|.+|.+.|+.++..+|.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~-~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL-DP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh-Cc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 357899999999998887544322 12 2446888999999999999999999999999999554
No 22
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.31 E-value=0.19 Score=37.09 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=50.1
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
=+.|++.|+++.|...++.+-.. . | +-...+|.+|++++.++++.+|...+..|....|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~-~------P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ-D------P--DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC-S------T--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-C------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46789999999999999777543 1 2 255799999999999999999999999999988854
No 23
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=5.2 Score=40.80 Aligned_cols=211 Identities=16% Similarity=0.196 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (413)
..+.-.|-+++=..|..+-|..++-.+. ...+...-+++.|.|--=.=|+.+.++||..|.-.-..--...-+...
T Consensus 131 arlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~- 206 (439)
T KOG1498|consen 131 ARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPD- 206 (439)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCcc-
Confidence 4677888899999999999999985543 223345567888998888888899999999887543322211111100
Q ss_pred HHHHHHH--------------HHHHHHhhcCC--CCC-----------------hhhhcccc------------------
Q 015089 253 NIRMILK--------------YLIPVKLSIGI--LPK-----------------DWLLEKYN------------------ 281 (413)
Q Consensus 253 nk~~IL~--------------yLIpv~Ll~G~--~P~-----------------~~ll~~~~------------------ 281 (413)
-..+=|+ ||=.|+-..+. .|. +-+|..|+
T Consensus 207 ~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e 286 (439)
T KOG1498|consen 207 VQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSE 286 (439)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhccccccc
Confidence 0011111 11111111110 010 00111111
Q ss_pred ccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH-------HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 015089 282 LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL-------VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDV 354 (413)
Q Consensus 282 l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyl-------lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~ 354 (413)
+..|..+++.+-+|-+-.|...-+.+++.+...+.+. -.+-|+.-++--=+|-+...| ++|++..
T Consensus 287 ~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yY--------SrIt~~r 358 (439)
T KOG1498|consen 287 LPDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYY--------SRITLKR 358 (439)
T ss_pred CccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHH--------hhccHHH
Confidence 2358899999999999999977777888777763322 334445555555566666666 9999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC
Q 015089 355 IVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 355 ~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
+..-+. .+.+|+|-.+.+|+..|.+.++|+...+.+-+.+.
T Consensus 359 l~eLLd-----l~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~ 399 (439)
T KOG1498|consen 359 LAELLD-----LPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKV 399 (439)
T ss_pred HHHHhC-----CCHHHHHHHHHHHHhccceEEEecCCCceEEEEec
Confidence 988876 68999999999999999999999999999887653
No 24
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.49 E-value=0.23 Score=31.71 Aligned_cols=32 Identities=16% Similarity=-0.014 Sum_probs=28.0
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.-.|..|..++..++|.+|.++++.|++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34688999999999999999999999998874
No 25
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=92.05 E-value=4.6 Score=43.89 Aligned_cols=204 Identities=14% Similarity=0.196 Sum_probs=130.3
Q ss_pred HHHHHHHHHh--cCChhhHHHHH------HHhhccCCCCCCCCCccchhhhh---hhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 176 TCQLFKIYFK--LGTVHLCRSVI------RSIETARIFDFEEFPKRDKVTYM---YYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 176 ~n~l~kiYfk--l~~~~l~~~i~------k~i~~~~~p~~~~~p~~~~v~y~---YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
=..||.||.. .+++..|+.++ -+|+..+ .+-|+-|. =-+|..+|-+|-..+|+.+|+.-..
T Consensus 487 RAmLchIYh~AL~d~f~~ARDlLLMSHlQdnI~h~D--------~stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~s 558 (843)
T KOG1076|consen 487 RAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHAD--------ISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQS 558 (843)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC--------hhHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3456667764 35566666554 3343332 23344443 2579999999999999999988764
Q ss_pred hcC---------------ccc----------------hHHHHHHH-HHHHHHHhhcCCCCC--------------hh---
Q 015089 245 NCN---------------PQS----------------EANIRMIL-KYLIPVKLSIGILPK--------------DW--- 275 (413)
Q Consensus 245 ~c~---------------~~~----------------~~nk~~IL-~yLIpv~Ll~G~~P~--------------~~--- 275 (413)
.-+ +.+ .-|.+++= .||+ |+||+ .+|. +.
T Consensus 559 t~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcVyLt-caMLl-EIP~MAA~~~d~Rrr~iSk~frr 636 (843)
T KOG1076|consen 559 TGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLT-CAMLL-EIPYMAAHESDARRRMISKSFRR 636 (843)
T ss_pred cchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHHHHH-HHHHH-hhhHHhhhhhhhhcccccHHHHH
Confidence 221 111 01223222 2333 55554 2222 11
Q ss_pred hhccccc----------cch-HHHHHHHHhCCHHHHHHHHHHc-HHHHH---HhcHHH-HHHHhHHHHHHHHHHHHHHHh
Q 015089 276 LLEKYNL----------VEY-SNIVQALRRGDLRLLRHALEEH-EDQFL---RSGVYL-VLEKLELQVYQRLFKKIYIIQ 339 (413)
Q Consensus 276 ll~~~~l----------~~y-~~L~~air~Gdl~~f~~~l~~~-~~~f~---k~glyl-lle~lr~~v~rnL~kkv~~~~ 339 (413)
.|+.++- .+| ..-.+|++.||++.-.+.+-++ ..|=+ .+.+.. +.+|++.--+|+.+=.....|
T Consensus 637 ~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y 716 (843)
T KOG1076|consen 637 QLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVY 716 (843)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1332221 122 3456899999999988865553 33221 223333 448888888888877666666
Q ss_pred hcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCC
Q 015089 340 KQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDP 402 (413)
Q Consensus 340 ~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~p 402 (413)
..+++..++.-+. ++...|..|+.+||-+--|-+.++...+++|+-+.+|
T Consensus 717 --------~SvSl~~LA~mFd-----Lp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE~ 766 (843)
T KOG1076|consen 717 --------DSVSLAKLADMFD-----LPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVEP 766 (843)
T ss_pred --------hhccHHHHHHHhC-----CCchhHHHHHHHHHHHHHhhhccCCCcceEEEeeccc
Confidence 7889999988885 6788899999999999999999999999999987654
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.63 E-value=3.7 Score=34.39 Aligned_cols=68 Identities=10% Similarity=-0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
+...+-.+|++.++++.+...+...-.. .| . -...+|+.|.++...+++.+|...+..|++.+|....
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAAL-DP------D--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3445667888899999999887544322 12 1 2467799999999999999999999999999986654
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.98 E-value=1.2 Score=33.91 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhc
Q 015089 172 ALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (413)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (413)
+....+.+-.+|+++|+++.|...++ +++-. ..++ ...+.+...+-+|.++-..+++.+|.+++.+|++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567888899999999999999884 44321 1221 123568899999999999999999999999999764
No 28
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=89.08 E-value=2.9 Score=30.68 Aligned_cols=64 Identities=16% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
....+-.+|...++++.+...++..-.. .| ... ...+..|.+++..+++.+|..++..+++.+|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~------~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALEL-DP------DNA--KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC------cch--hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4455667788889999998887544322 12 111 5778899999999999999999999998876
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=88.52 E-value=1 Score=35.09 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHH
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYA 242 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A 242 (413)
+-++||+.|+++.|-.+++..+.. + ..+..+|..|+.++-.++|.+|.++|.+|
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~~--------~--~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKLD--------P--SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTHH--------H--CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCC--------C--CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 788999999999999998662211 1 12567778899999999999999999876
No 30
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.11 E-value=0.87 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=28.2
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
..+|-.|.++...+++.+|.++|..|++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3578899999999999999999999998876
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=88.04 E-value=7 Score=33.95 Aligned_cols=79 Identities=9% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc--h
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--E 251 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~ 251 (413)
.....+-.++.+.|+++.+-..+...-.. .| +-...+|.+|..+...|++.+|.+.+..|++.+|.+. .
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALML-DA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 34456677788899999999998544322 12 2237899999999999999999999999999999764 3
Q ss_pred HHHHHHHHHH
Q 015089 252 ANIRMILKYL 261 (413)
Q Consensus 252 ~nk~~IL~yL 261 (413)
.++..++.++
T Consensus 130 ~~~~~~~~~l 139 (144)
T PRK15359 130 EIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHH
Confidence 5666665543
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.01 E-value=2.6 Score=31.09 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhc-ChHHHHHHHHHHHHhcC
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCN 247 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~ 247 (413)
...+=.+|++.++++.+...++ +|+-. | ..+...|.+|..++..+ ++.+|.+++..|++.-|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD--P--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS--T--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455567888999999888874 44421 2 23468899999999998 79999999999987644
No 33
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.74 E-value=0.74 Score=28.72 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=28.3
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.|.+|+.+...+++.+|.+.|.......|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999998853
No 34
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=87.48 E-value=1.9 Score=47.48 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=62.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEec
Q 015089 320 LEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSK 399 (413)
Q Consensus 320 le~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk 399 (413)
+.-|+.+.++.||+.|..+| ..|+++.+..-..| .+.-++|-+++.....|.+.-.|+|..++|.+++
T Consensus 426 I~sLq~v~~~RllqQvSqiY--------~sIs~~~l~~La~F----~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 426 IPSLQDVIILRLLQQVSQIY--------ESISFERLYKLAPF----FSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred chhHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHhh----cCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 45578899999999999999 78888887766555 5889999999999999999999999999999987
Q ss_pred CCCCC
Q 015089 400 QDPFP 404 (413)
Q Consensus 400 ~~pFP 404 (413)
|.|-
T Consensus 494 -Dl~~ 497 (988)
T KOG2072|consen 494 -DLFL 497 (988)
T ss_pred -cccc
Confidence 5554
No 35
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=87.35 E-value=1.2 Score=33.91 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=30.3
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
..+++++.++.-|+ ++.+.||.+|.-||.+|+|+-.-
T Consensus 12 ~~~~S~~eLa~~~~-----~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 12 RGRVSLAELAREFG-----ISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp S-SEEHHHHHHHTT-------HHHHHHHHHHHHCCTSCEEEE
T ss_pred cCCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEEEec
Confidence 37899999999987 68999999999999999998443
No 36
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=86.56 E-value=5.8 Score=28.95 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+-.+|++.|+++.+...++..-.. .| ... ...+..|.++...+++.+|.+++..+....|...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-DP------DNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-CC------ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3556778899999998888544322 12 221 5678999999999999999999999999877544
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.18 E-value=2.1 Score=31.58 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=30.6
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+-.|..++..++|.+|.++|+.|++.+|.+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4577899999999999999999999999998655
No 38
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=83.85 E-value=27 Score=30.01 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+.++++...+.++.... .|+ ... -..--.|-++|...++++.+...+..+... ...-.+....|.+
T Consensus 62 g~~~~A~~~l~~~~~~~-~d~--~l~-~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----------~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 62 GDYDEAKAALEKALANA-PDP--ELK-PLARLRLARILLQQGQYDEALATLQQIPDE----------AFKALAAELLGDI 127 (145)
T ss_pred CCHHHHHHHHHHHHhhC-CCH--HHH-HHHHHHHHHHHHHcCCHHHHHHHHHhccCc----------chHHHHHHHHHHH
Confidence 46677777777776654 221 111 112223668999999999999998554321 1223578889999
Q ss_pred hhhhcChHHHHHHHHHHH
Q 015089 226 EVFNENFPAADQKLSYAL 243 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~ 243 (413)
++-+|++.+|...+..|+
T Consensus 128 ~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHCCCHHHHHHHHHHhC
Confidence 999999999999999874
No 39
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.91 E-value=4.6 Score=39.73 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIET 201 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~ 201 (413)
+....+..++|.++|++++++..++++..
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888899999999999999999988864
No 40
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.73 E-value=2.2 Score=29.05 Aligned_cols=32 Identities=16% Similarity=-0.105 Sum_probs=29.0
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+-+|+.+.-.|++.+|...|..+++.+|.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45689999999999999999999999999665
No 41
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.62 E-value=64 Score=32.14 Aligned_cols=211 Identities=15% Similarity=0.183 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (413)
.++.-.|-++|-..|..+.+..++=+.. ...+..+..++.|.|--=.=|+.+..+||..|...-..-.+..-+...-
T Consensus 131 ariT~~L~~ikee~Gdi~sA~Dilcn~p---VETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~ 207 (439)
T COG5071 131 ARLTQLLSQIKEEQGDIKSAQDILCNEP---VETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDV 207 (439)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHhcCc---hhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccH
Confidence 4688889999999999999999874332 2234456678889888888899999999999998777766654433322
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhh---hcc-c-------------c----------ccchH----HHHHHHHhCCHHHHH
Q 015089 253 NIRMILKYLIPVKLSIGILPKDWL---LEK-Y-------------N----------LVEYS----NIVQALRRGDLRLLR 301 (413)
Q Consensus 253 nk~~IL~yLIpv~Ll~G~~P~~~l---l~~-~-------------~----------l~~y~----~L~~air~Gdl~~f~ 301 (413)
.-..+=-|=..|++-+|+---++. ++. | + |.+|. +|+. =++||.+.-.
T Consensus 208 ~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iLtpy~neq~dlvh-Ki~~d~kl~s 286 (439)
T COG5071 208 QSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALLTPYDNEQADLLH-KINADHKLNS 286 (439)
T ss_pred HHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeEEecccccHHHHHHH-Hhhhhhhhcc
Confidence 222222233445554443111110 000 1 0 12232 2222 2334433221
Q ss_pred HHHHHcH------HHHHHh----cHHH-----------------HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 015089 302 HALEEHE------DQFLRS----GVYL-----------------VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDV 354 (413)
Q Consensus 302 ~~l~~~~------~~f~k~----glyl-----------------lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~ 354 (413)
.-..+-. ..|+++ .+|- -.+-|+.-|.--=+|-+...| ++|++..
T Consensus 287 l~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~~faF~~e~~~~~w~DL~krviEHN~RvI~~yY--------SrI~~~r 358 (439)
T COG5071 287 LPLLQQLVKCFIVNELMRWPKVAEIYGSALRSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYY--------SRIHCSR 358 (439)
T ss_pred chhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhhhhhhccchhhhhHHHHHHHHHHhhHhHHHHHh--------hhhhHHH
Confidence 1111100 011111 1111 011122222222233333333 6777776
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC
Q 015089 355 IVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 355 ~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
+..-+. .+++++|--+.-|..+|.+-++|.+.-+.+-+-|.
T Consensus 359 l~~lld-----~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~ 399 (439)
T COG5071 359 LGVLLD-----MSPSETEQFISDLVNKGHFYAKINRPAQIISFEKS 399 (439)
T ss_pred HHHHHc-----CCHHHHHHHHHHHHhcCcEEEEecCccceEEeecc
Confidence 666654 68999999999999999999999999999988875
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=80.06 E-value=8.7 Score=30.83 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+-.+|++.++++.+...++.+-.. .|. .+ ......+..|.++.-.+++.+|..++.+++...|.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~---~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKK-YPK---SP--KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-CCC---CC--cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 344677899999999999999766432 222 11 1235689999999999999999999999999988654
No 43
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.11 E-value=49 Score=29.92 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+.++.|.+...++..-|.+. ...+-+.-.++++.+-.+++..+.+.+...++. +. ..-+..-+.+.+=|.|..
T Consensus 50 Gd~~~A~k~y~~~~~~~~~~----~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~--~~-~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYCTSP----GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL--IE-KGGDWERRNRLKVYEGLA 122 (177)
T ss_pred hhHHHHHHHHHHHhhhcCCH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--Hh-ccchHHHHHHHHHHHHHH
Confidence 34555665666665555543 234567778899999999999999888655543 11 011234456789999999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHhhc
Q 015089 226 EVFNENFPAADQKLSYALINCNP---QSEANIRMILKYLIPVKLSI 268 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~---~~~~nk~~IL~yLIpv~Ll~ 268 (413)
++.+++|.+|-+.|..+...... ...---.-|-.|-+.+.|..
T Consensus 123 ~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat 168 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALAT 168 (177)
T ss_pred HHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHh
Confidence 99999999999999988755432 22122345556777666653
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.20 E-value=3.6 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=26.6
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
...+-.|..++..+++.+|..++..|++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3467789999999999999999999987654
No 45
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=72.32 E-value=4.3 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.7
Q ss_pred hhhHHHhhhhcChHHHHHHHHHHHHhc
Q 015089 220 YYTGRLEVFNENFPAADQKLSYALINC 246 (413)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (413)
..+|.+|.-.++|.+|.+.+.+|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987544
No 46
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=71.95 E-value=69 Score=30.49 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=49.5
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 181 kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+++-|+++.+...++.+... .|. -|..... .|.+|..++-.++|.+|...+...++..|.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~-yP~---s~~a~~a--~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNR-YPF---GPYSQQV--QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCC---ChHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 3457789999999998877653 332 1233333 68999999999999999999999999998665
No 47
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=71.83 E-value=20 Score=32.61 Aligned_cols=137 Identities=13% Similarity=0.186 Sum_probs=75.8
Q ss_pred cchhhhhhhhHHHhhhhcC---hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHhhcCCCCChhh-hcccc------
Q 015089 213 RDKVTYMYYTGRLEVFNEN---FPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDWL-LEKYN------ 281 (413)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~---~~~A~~~L~~A~~~c~~~-~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l~~~~------ 281 (413)
...+.-+...+|+++..+| |.+....|...+...... ...|+..+.-|.+...+..+..+.+.. +...+
T Consensus 53 ~~~i~v~E~~ar~~i~~~d~~qf~~c~~~L~~lY~~~~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~ 132 (204)
T PF03399_consen 53 DFAIKVYERIARFAIESGDLEQFNQCLSQLKELYDDLRDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSS 132 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTS
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcC
Confidence 3466677777777776544 455555555555553111 235667777777766555554444432 22221
Q ss_pred -ccch-HHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH-HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 015089 282 -LVEY-SNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL-VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKA 358 (413)
Q Consensus 282 -l~~y-~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyl-lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~a 358 (413)
...+ ..+.+|+..||..+|=+.+++.+...+...+.. .+.++|..+++.+.+- + .+.+|++.+..-
T Consensus 133 ~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR~~al~~i~~a----y-------~~~i~l~~l~~~ 201 (204)
T PF03399_consen 133 PYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIRLRALQSISKA----Y-------RSSIPLSFLAEL 201 (204)
T ss_dssp HHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHHHHHHHHHHHH----S--------T-EEHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH----c-------CCCCCHHHHHHH
Confidence 1123 488999999999999999944444444433333 5677777776655553 4 125999988876
Q ss_pred Hh
Q 015089 359 LK 360 (413)
Q Consensus 359 l~ 360 (413)
|.
T Consensus 202 L~ 203 (204)
T PF03399_consen 202 LG 203 (204)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 48
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=57 Score=34.53 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhc
Q 015089 167 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (413)
Q Consensus 167 ~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (413)
+++....++--.+--+|.+.++..-.+.++.+|.... ..+..+......+.|-.|.+.+.+++|.||...|.+-++..
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n--t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN--TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC--CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4444555555566778999888777777776664321 11122234456789999999999999999999999999876
Q ss_pred CccchHHHHHHHHHHHHHHhh---c--------CCCCChhhhcc-ccc-------cchHHHHHHHHhCCHHHHHHHHHHc
Q 015089 247 NPQSEANIRMILKYLIPVKLS---I--------GILPKDWLLEK-YNL-------VEYSNIVQALRRGDLRLLRHALEEH 307 (413)
Q Consensus 247 ~~~~~~nk~~IL~yLIpv~Ll---~--------G~~P~~~ll~~-~~l-------~~y~~L~~air~Gdl~~f~~~l~~~ 307 (413)
+.-.+-|+.--+|+..+.+ . |-.|..++=.| |+. ..|.+|-+|....-...-.++..++
T Consensus 476 --naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 476 --NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH 553 (629)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3344555554555554433 3 23455555444 332 3467777776442244444444443
No 49
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.68 E-value=8.6 Score=29.04 Aligned_cols=34 Identities=15% Similarity=-0.083 Sum_probs=28.8
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
+.++..+.+|.++...++|.+|.+++..|+..+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 36 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEE 36 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998743
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=70.57 E-value=24 Score=28.19 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.+-..+++.|+++.+...+..+... .|+ .+ ....-+|..|+.++-.++|.+|...+..+...+|..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-YPK---ST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC---cc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 3455678889999888888655432 221 11 123457889999999999999999999999988753
No 51
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=70.44 E-value=7.2 Score=28.46 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=43.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 184 fkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++.|+++.+-.+++.+-.. . |... ..++.+|++++-.|++.+|.+.|..+....|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~------p~~~--~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-N------PDNP--EARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-T------TTSH--HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH-C------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 5678888888888655332 2 3322 567789999999999999999999999988863
No 52
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.84 E-value=72 Score=33.82 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=90.2
Q ss_pred ccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHHhhcCCCCC-hhhhcc------cc
Q 015089 212 KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE---ANIRMILKYLIPVKLSIGILPK-DWLLEK------YN 281 (413)
Q Consensus 212 ~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~---~nk~~IL~yLIpv~Ll~G~~P~-~~ll~~------~~ 281 (413)
+.+-...+|-+|.+.+.-+-|++|+.||..|.+..+.... -|-.....||- .|+.-+ .++++. +.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~-----~~~~ed~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR-----IGDAEDLYKALDLIGPLNTNS 437 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH-----hccHHHHHHHHHhcCCCCCCc
Confidence 4667788999999999999999999999999998764332 23333333332 222110 111111 11
Q ss_pred -----cc---chHHHHHHHHhCCHHHHHHHHHH------cHHHHHHhcHHHHHHHhHHHHH------HHHHHHHHHHhhc
Q 015089 282 -----LV---EYSNIVQALRRGDLRLLRHALEE------HEDQFLRSGVYLVLEKLELQVY------QRLFKKIYIIQKQ 341 (413)
Q Consensus 282 -----l~---~y~~L~~air~Gdl~~f~~~l~~------~~~~f~k~glyllle~lr~~v~------rnL~kkv~~~~~~ 341 (413)
+. -|-.=.-|+++|++..-...+.+ +|+.+.-.+.++++-..-..+. ||.+|....+.+
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk- 516 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK- 516 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh-
Confidence 11 24455668899999877665553 6888888899888777777788 999999888762
Q ss_pred CCCCCCccccHHHHHHH
Q 015089 342 KDPSKAHQMKLDVIVKA 358 (413)
Q Consensus 342 ~~~~~~~~i~l~~~~~a 358 (413)
|.+.||...+..+
T Consensus 517 ----Ki~Di~vqLws~s 529 (629)
T KOG2300|consen 517 ----KIPDIPVQLWSSS 529 (629)
T ss_pred ----cCCCchHHHHHHH
Confidence 4466666544444
No 53
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=69.12 E-value=94 Score=28.50 Aligned_cols=73 Identities=7% Similarity=0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 172 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
+..+....+-++.+-+++..|..++..++.-..|+. -.-.++.+.||.|.+...+|+-.++.+....|+.-+.
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~---~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPED---DLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhh---hHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 344444444455667788999999988876544431 1236899999999999999998888777777776544
No 54
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.96 E-value=86 Score=34.37 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
+...++.+.-+++.+.|-+. -. -.|.|=.+|-..|+++.+..++ ++++- +|.+.. =+=-+|.
T Consensus 334 G~V~ea~~cYnkaL~l~p~h---ad----am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aa--------a~nNLa~ 396 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNH---AD----AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAA--------AHNNLAS 396 (966)
T ss_pred cchHHHHHHHHHHHHhCCcc---HH----HHHHHHHHHHHhccchHHHHHHHHHHhh--Chhhhh--------hhhhHHH
Confidence 35566666677777777653 11 3455667899999999999997 45543 344322 1224678
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 015089 225 LEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
++=.+|++.+|-.|..+|++--|.
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCch
Confidence 888999999999999999998884
No 55
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=67.25 E-value=34 Score=34.06 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+.+..+|.+.++++.+...++.+.... |. .+......|.+-+|..++..+++.+|.+.+.++++..|..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLG-GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 345677889999999999998887664431 21 1222345566678999999999999999999999887643
No 56
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.77 E-value=11 Score=23.24 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~ 204 (413)
...|.+++.|.+.|+++.+..+++.+....+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999998876543
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=66.35 E-value=1.1e+02 Score=28.15 Aligned_cols=142 Identities=11% Similarity=0.036 Sum_probs=76.2
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 015089 79 FRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKV 158 (413)
Q Consensus 79 l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~ 158 (413)
-.....+..+++.+|...+.+++ ..+. +..|.....+..+..+ . ..+..+.+...+.+.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~----~~~p--~~~~~~~a~~~la~~~-------~--------~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALE----SRYP--FSPYAEQAQLDLAYAY-------Y--------KSGDYAEAIAAADRF 96 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HhCC--CchhHHHHHHHHHHHH-------H--------hcCCHHHHHHHHHHH
Confidence 33344556778888887655543 2222 2334333322222111 1 113455566666655
Q ss_pred HHhhhCCCCchhHHHHHHHHHHHHHHhc--------CChhhHHHHHHHhhccCCCCCCCCCccchh------------hh
Q 015089 159 FGVLAGKGSKRVGALYLTCQLFKIYFKL--------GTVHLCRSVIRSIETARIFDFEEFPKRDKV------------TY 218 (413)
Q Consensus 159 f~~~~~d~~Kk~~~~~l~n~l~kiYfkl--------~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v------------~y 218 (413)
.+..-++..-..+. ..+-.+|++. ++++.+...++.+-.. .|.- +..... ..
T Consensus 97 l~~~p~~~~~~~a~----~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~---~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 97 IRLHPNHPDADYAY----YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS---EYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred HHHCcCCCchHHHH----HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC---hhHHHHHHHHHHHHHHHHHH
Confidence 54333221111122 2333445544 6677777777544322 2321 111111 23
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.+..|.+++..+++.+|...+..+...+|.+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 4688999999999999999999999999864
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=66.19 E-value=80 Score=31.85 Aligned_cols=88 Identities=11% Similarity=-0.002 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+.|...+.++... +++ . ......+-.+|.++|+++.+...+...-.. .| . ....+|-+|..+
T Consensus 17 ~~~~Ai~~~~~Al~~---~P~-~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P------~--~~~a~~~lg~~~ 80 (356)
T PLN03088 17 DFALAVDLYTQAIDL---DPN-N---AELYADRAQANIKLGNFTEAVADANKAIEL-DP------S--LAKAYLRKGTAC 80 (356)
T ss_pred CHHHHHHHHHHHHHh---CCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc------C--CHHHHHHHHHHH
Confidence 445555555544432 211 1 123356667889999999998887433221 12 1 224577889999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+..++|.+|..+|..|+...|.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999887554
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=65.94 E-value=64 Score=28.49 Aligned_cols=72 Identities=14% Similarity=-0.015 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 171 GALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 171 ~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.-......+-..|.+.|+++.+-..++. ++.. |. ..+.....+-+|.++...++|.+|.+++..|+...|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE--ED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3344556777889999999999888753 3322 11 11235688999999999999999999999999987644
No 60
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=65.70 E-value=2.5e+02 Score=32.26 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhH
Q 015089 145 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTG 223 (413)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~~p~~~~~p~~~~v~y~YY~G 223 (413)
.+...++-+.++++|+.--.++ .+.|.|=..||--+++..|-.+--+ +.++ +..+....=.|.+|
T Consensus 249 ~~s~~~~~~ll~~ay~~n~~nP-------~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-------~~~~~~aes~Y~~g 314 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENNENP-------VALNHLANHFYFKKDYERVWHLAEHAIKNT-------ENKSIKAESFYQLG 314 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcCCCc-------HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHH
Confidence 3566667777787776543332 2556666677777888888877532 2222 12344445679999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 224 RLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
|.|=-+|||.+|+.++.+|....+..
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999855533
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=64.57 E-value=1.6e+02 Score=32.16 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+...+-..|++.++++.+...++.+-.. .| .. ..-.+.+|..++..++|.+|.+.+..+...+|...
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~------~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAI-DP------RS--LYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC------CC--hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 44556677888899999888888544322 12 11 23467788889999999999999999998877543
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=63.94 E-value=24 Score=33.74 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+.+|.+.++.+.+..+++.+... +. .+ +...|.+..|.++.-.|++.+|.+.+..|++.-|.+.
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~---~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEEL--PA---AP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH---T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhc--cC---CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 345678899999999999999876642 11 12 3457889999999999999999999999999988654
No 63
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=63.28 E-value=8.9 Score=24.85 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=24.0
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
..-+|.++...++|.+|...+.+|+..+-
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45689999999999999999999998754
No 64
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=63.00 E-value=21 Score=30.95 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHcH-HHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 015089 284 EYSNIVQALRRGDLRLLRHALEEHE-DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 362 (413)
Q Consensus 284 ~y~~L~~air~Gdl~~f~~~l~~~~-~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~ 362 (413)
.-..|.+++.+||..+|-.+++.+. ...++..+-.+.+.+|.-+. +-+-..| +.|+++.+...|.
T Consensus 43 ~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~i~----~~i~~aY--------~sIs~~~la~~Lg-- 108 (143)
T PF10075_consen 43 AIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRERIA----HLISKAY--------SSISLSDLAEMLG-- 108 (143)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHHHH----HHHHHH---------SEE-HHHHHHHTT--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----HHHHHHH--------hHcCHHHHHHHhC--
Confidence 3468899999999999999998751 12222222223455555443 3344445 8999999999987
Q ss_pred cCCCCHHHHHHHHHHH
Q 015089 363 EMDMDVDEVECIVAIL 378 (413)
Q Consensus 363 ~~~~d~~evEcila~L 378 (413)
++.+|++-++.+.
T Consensus 109 ---~~~~el~~~~~~~ 121 (143)
T PF10075_consen 109 ---LSEEELEKFIKSR 121 (143)
T ss_dssp ---S-HHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHc
Confidence 4688888887776
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.68 E-value=23 Score=34.38 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccc-hhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD-KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 182 iYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~-~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+++-++++-+-..|+.+-.. .| .+. .-.-+|++|..++-.++|.+|..+|...+...|.+.
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~-yP------~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKK-YP------DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHH-Cc------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 344458888887777666433 33 221 224569999999999999999999999999888554
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=61.99 E-value=64 Score=26.64 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
....+-..|++.++++-+...+..+-.. .| . -....+.+|..++..++|.+|...+..|....|.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p------~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY-DP------Y--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh-CC------C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445666788899999999998665432 12 1 13677899999999999999999999999876653
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=59.99 E-value=67 Score=28.25 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.....+-..|++.|+++.+...+...-.. .| . .....+..|.++...+++.+|.+.+..|+...|...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p------~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH-DP------D--DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 44455678889999999998887543221 12 1 125667789999999999999999999999877543
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=59.18 E-value=2.7e+02 Score=30.32 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
....+..+|.+.|+++.+..+++.+.... | ... ...+..|.+++..++|.+|.+.+..++...|..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~------~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-P------KAA--LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c------CCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 44567778889999999999998776542 2 222 345678999999999999999999999988755
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=54.32 E-value=24 Score=34.47 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=34.0
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHH
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIR 255 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~ 255 (413)
..-+||+|+.+...|++.+|..++..|....|.+....+-
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4578999999999999999999999999998866554443
No 70
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=54.13 E-value=34 Score=27.72 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
..=++++.|...|. ++.++|+..|-.|+.+|+|---|
T Consensus 63 ~~Gv~v~~I~~~l~-----~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 63 EEGVHVDEIAQQLG-----MSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp TTTEEHHHHHHHST-----S-HHHHHHHHHHHHHTTSEEESS
T ss_pred CCcccHHHHHHHhC-----cCHHHHHHHHHHHHhCCeEeccc
Confidence 35599999999985 68999999999999999985433
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=53.80 E-value=49 Score=30.49 Aligned_cols=68 Identities=6% Similarity=-0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc-chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR-DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~-~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
-.+-..|++.++++.+...+..+-.. .| .+ ....-+|.+|..++-.+++.+|...+..+++..|.+..
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~-~p------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESR-YP------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 33445788899999998888655332 22 22 22345799999999999999999999999999986553
No 72
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=53.45 E-value=1.5e+02 Score=27.08 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 015089 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKY 260 (413)
Q Consensus 181 kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~y 260 (413)
..+++.|++..+...++.+... .| ..|.++.+.| .+|..+.-.++|.+|...+..-.+..|.+...-.-.-++=
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~-~P---~s~~a~~A~l--~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDR-YP---NSPYAPQAQL--MLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH--T---TSTTHHHHHH--HHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-CC---CChHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Q ss_pred HHHHHhhcCC-------------CCChh-hhccccccchHHHHHHHHhCCHHHHHHHHHHcHH----HHHHhcHHH-HHH
Q 015089 261 LIPVKLSIGI-------------LPKDW-LLEKYNLVEYSNIVQALRRGDLRLLRHALEEHED----QFLRSGVYL-VLE 321 (413)
Q Consensus 261 LIpv~Ll~G~-------------~P~~~-ll~~~~l~~y~~L~~air~Gdl~~f~~~l~~~~~----~f~k~glyl-lle 321 (413)
+.=..+.-|. +-.+. ++++||-.+|.+-++ --+....+.|.+++- ++.++|-|. .+.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~----~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK----KRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH----HHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Q ss_pred HhHHHH
Q 015089 322 KLELQV 327 (413)
Q Consensus 322 ~lr~~v 327 (413)
|.+.++
T Consensus 163 r~~~v~ 168 (203)
T PF13525_consen 163 RFQYVI 168 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 73
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=52.90 E-value=28 Score=30.15 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCC
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 392 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~ 392 (413)
..++|+..+...+. ++...+-..+-+|...|.|+||-..-+
T Consensus 20 d~r~~~~eia~~lg-----lS~~~v~~Ri~~L~~~GiI~~~~~~v~ 60 (154)
T COG1522 20 DARISNAELAERVG-----LSPSTVLRRIKRLEEEGVIKGYTAVLD 60 (154)
T ss_pred hCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHCCceeeEEEEEC
Confidence 36799999999998 678999999999999999999765443
No 74
>PF13041 PPR_2: PPR repeat family
Probab=51.68 E-value=29 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~ 204 (413)
...|.++..|++.|+++.|..+++.+....+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999987654
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=51.42 E-value=1.7e+02 Score=25.61 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
....+-.+|+..|+++.+...+...-.. +. ++ ......+..|..+...+++.+|...+..|+...|..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~---~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIED--PL---YP--QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--cc---cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 3445567788999999998888654322 11 11 223456668999999999999999999999876643
No 76
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.29 E-value=26 Score=25.35 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=28.4
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
-+.||++.=+.--++|.+|.++...+++.=|..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 378999999999999999999999999987743
No 77
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=50.48 E-value=92 Score=33.66 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.+-.+|+++|+++.+...++..-.. . |.. ....++.|.++...++|.+|.+.+..|+...|.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~-~------P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN-F------PEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-C------CCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 4455666777777776666433211 1 211 234556677777777777777777777777664
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=50.46 E-value=2.4e+02 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=14.4
Q ss_pred hhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 220 YYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
+..|..+...++|.+|.+.+..|+...|.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44454444555555555555555554443
No 79
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.42 E-value=19 Score=33.82 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=63.6
Q ss_pred ccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 015089 282 LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 361 (413)
Q Consensus 282 l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~ 361 (413)
-..|..+..-.-.|++..+...-.+ |-+-. ..-+.+|+++..-++.-+ ...||+..+...+..
T Consensus 59 dsa~lrlL~lFa~Gt~~Dy~aea~r----lp~Ls-~~q~~kLk~ltV~slas~------------~k~lpy~~Ll~~l~~ 121 (258)
T KOG3250|consen 59 DSAYLRLLELFAYGTYRDYSAEALR----LPKLS-LAQLNKLKHLTVVSLASF------------EKCLPYLVLLRLLPS 121 (258)
T ss_pred cHHHHHHHHHHhcCchhhhhhhhhc----CCCCC-HHHHHhhhcceehhhhhh------------chhhhHHHHHhhccC
Confidence 3457777777777777766543211 11111 123345555554444332 367888888888764
Q ss_pred ccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEe
Q 015089 362 LEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLS 398 (413)
Q Consensus 362 ~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlS 398 (413)
. ..-|+|..+.-..+.+.++|+|+..++++-++
T Consensus 122 ~----nvrelEd~iieamya~IlrGkldqr~q~leV~ 154 (258)
T KOG3250|consen 122 R----NVRELEDLIIEAMYADILRGKLDQRNQTLEVD 154 (258)
T ss_pred C----chhHHHHHHHHHHHHHHHHhhHHhhcceEeec
Confidence 3 45789999999999999999999999998765
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=50.35 E-value=27 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.4
Q ss_pred hhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 220 YYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
|=.|+.++-.++|.+|.+.|..+.+.-|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~ 30 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN 30 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 447899999999999999999999988753
No 81
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=48.72 E-value=17 Score=21.77 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=20.5
Q ss_pred hhhhhHHHhhhhcChHHHHHHHH
Q 015089 218 YMYYTGRLEVFNENFPAADQKLS 240 (413)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~ 240 (413)
.++.+|+.+...|++.+|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999999875
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=48.06 E-value=4e+02 Score=29.77 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~-------~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
....++..|.+.++++.+...+..+... .|. ....|..+.....+..|.++...+++.+|.+.|..+...-|
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455666788999999999888766543 221 12345556677889999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHHHhhcCCCCChh-hhcc----ccc---cchHHHHHHHHhCCHHHHHHHHHH
Q 015089 248 PQSEANIRMILKYLIPVKLSIGILPKDW-LLEK----YNL---VEYSNIVQALRRGDLRLLRHALEE 306 (413)
Q Consensus 248 ~~~~~nk~~IL~yLIpv~Ll~G~~P~~~-ll~~----~~l---~~y~~L~~air~Gdl~~f~~~l~~ 306 (413)
.+. .++..+.-+-+-.|+...-. .+++ .+- ..+....-+++.|++..-+..+++
T Consensus 391 ~n~-----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 391 GNQ-----GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 553 23334444444456532211 1221 111 124555578888886665555554
No 83
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=47.24 E-value=40 Score=29.60 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=33.6
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
..|+|++.+++.+. ++...|-.-+-.|...|.|+||-
T Consensus 21 d~R~s~~eiA~~lg-----lS~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 21 NARTPYAELAKQFG-----VSPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred cCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeeEE
Confidence 47999999999998 67899999999999999999873
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=46.87 E-value=1e+02 Score=28.25 Aligned_cols=80 Identities=8% Similarity=0.034 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCC-----CC-------CCC--CCccchhhhhhhhHHHhhhhcChHHHH
Q 015089 171 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARI-----FD-------FEE--FPKRDKVTYMYYTGRLEVFNENFPAAD 236 (413)
Q Consensus 171 ~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~-----p~-------~~~--~p~~~~v~y~YY~Gr~~~~~~~~~~A~ 236 (413)
++..+.....=.||++|+++....=.+.+..... .. +.. -...+-....+.+|++++..+++.+|.
T Consensus 14 ~~~~~~~~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 14 LTILMVFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677778889999998776544433211100 00 000 001233467899999999999999999
Q ss_pred HHHHHHHHhcCccc
Q 015089 237 QKLSYALINCNPQS 250 (413)
Q Consensus 237 ~~L~~A~~~c~~~~ 250 (413)
+.+..|.+.-|.+.
T Consensus 94 ~a~~~Al~l~P~~~ 107 (198)
T PRK10370 94 LAYRQALQLRGENA 107 (198)
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999888543
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=46.60 E-value=49 Score=29.62 Aligned_cols=85 Identities=8% Similarity=-0.077 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
+++++|.+... -.|.-|+.-..+.+.++. +|-.++++..+=..+. ++.-. | ..| +-.||.|.
T Consensus 49 G~l~~A~~~f~---~L~~~Dp~~~~y~~gLG~----~~Q~~g~~~~AI~aY~~A~~L~--~---ddp-----~~~~~ag~ 111 (157)
T PRK15363 49 KEFAGAARLFQ---LLTIYDAWSFDYWFRLGE----CCQAQKHWGEAIYAYGRAAQIK--I---DAP-----QAPWAAAE 111 (157)
T ss_pred CCHHHHHHHHH---HHHHhCcccHHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcC--C---CCc-----hHHHHHHH
Confidence 35566553332 245566543444444332 3444555555554442 22111 1 123 56789999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcC
Q 015089 225 LEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
.++.-++...|.+.|..|+..|.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999994
No 86
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=46.31 E-value=3e+02 Score=27.11 Aligned_cols=143 Identities=9% Similarity=-0.021 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 015089 71 FADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKA 150 (413)
Q Consensus 71 ~~evv~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~ 150 (413)
..+....|...+.....+++.+|...+.+++.. + ..+|. .....+..++ ..+..++
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~------~-p~~~~--~~~~la~~~~---------------~~g~~~~ 87 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV------D-PETVE--LHLALGNLFR---------------RRGEVDR 87 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-cccHH--HHHHHHHHHH---------------HcCcHHH
Confidence 344555667777777888899988877666541 1 12221 1111111110 0123444
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhc
Q 015089 151 AGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE 230 (413)
Q Consensus 151 ~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~ 230 (413)
+...+.++... .+.. ........+.+-.+|++.|+++.+..+++..-.. . |. .......+|.++..++
T Consensus 88 A~~~~~~~l~~--~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~------~~--~~~~~~~la~~~~~~g 155 (389)
T PRK11788 88 AIRIHQNLLSR--PDLT-REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-G------DF--AEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHHHHHhcC--CCCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-C------cc--hHHHHHHHHHHHHHhc
Confidence 44444444331 1111 1122356678889999999999999998655332 1 21 2244567899999999
Q ss_pred ChHHHHHHHHHHHHhcCcc
Q 015089 231 NFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 231 ~~~~A~~~L~~A~~~c~~~ 249 (413)
+|.+|.+.+..+....|..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred hHHHHHHHHHHHHHhcCCc
Confidence 9999999999998866543
No 87
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.76 E-value=42 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~ 204 (413)
..|.++..|.+.++++.+..+++.+....+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 368899999999999999999998876543
No 88
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=45.60 E-value=57 Score=28.97 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 346 KAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 346 ~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
+..|++++.+++++. ++..-|-.-+-.|...|.|+||.-.
T Consensus 25 ~d~R~s~~eiA~~lg-----lS~~tv~~Ri~rL~~~GvI~~~~~~ 64 (164)
T PRK11169 25 KDGRISNVELSKRVG-----LSPTPCLERVRRLERQGFIQGYTAL 64 (164)
T ss_pred cCCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 458999999999998 5788899999999999999997643
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.07 E-value=91 Score=30.18 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
.+=..|+..++++.+...++.+-.. .|. .|+.. ...|.+|.++.-.+++.+|.+.+....+..|.+..
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~-yP~---s~~~~--dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKN-YPK---SPKAA--DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC---Ccchh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4456788999999999998766432 332 12222 45777999999999999999999999999997654
No 90
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=44.58 E-value=45 Score=30.79 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=33.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
..++|++++..++ +...++.+-+-.|..+|.|-|-|+-..+.|-+|..
T Consensus 112 Kvv~ledla~~f~-----l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~e 159 (188)
T PF09756_consen 112 KVVNLEDLAAEFG-----LRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEE 159 (188)
T ss_dssp SEE-HHHHHHHH------S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE----
T ss_pred ceeeHHHHHHHcC-----CCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHH
Confidence 6789999999987 57889999999999999999999987777777754
No 91
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.21 E-value=27 Score=20.83 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIET 201 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~ 201 (413)
..|.+++.|.+.|+++.+..+++-+..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 468899999999999999999987754
No 92
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=43.60 E-value=1.8e+02 Score=30.66 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=50.9
Q ss_pred cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHH-HHHH
Q 015089 186 LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKY-LIPV 264 (413)
Q Consensus 186 l~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~y-LIpv 264 (413)
-...+.|..++..... .||. .+-|.++.||++..+++..+|-+.|+.|.... +..++...+..| +.-+
T Consensus 246 ~~~~~~a~~lL~~~~~-------~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK-------RYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWC 314 (468)
T ss_pred CCCHHHHHHHHHHHHH-------hCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHH
Confidence 4566778888865543 3564 55699999999999999999999999999432 233444444433 2333
Q ss_pred HhhcCCCC
Q 015089 265 KLSIGILP 272 (413)
Q Consensus 265 ~Ll~G~~P 272 (413)
.+++++.+
T Consensus 315 ~~~~~~w~ 322 (468)
T PF10300_consen 315 HMFQHDWE 322 (468)
T ss_pred HHHHchHH
Confidence 44455543
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.54 E-value=1.6e+02 Score=25.09 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHH
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (413)
+=++++..|+++-+...++.+-... |+ | .-.-.-++.++++++-+++|.+|...|..
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~-~d----~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA-PD----P-ELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-CC----H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5588899999999999997665432 32 1 11223467799999999999999999955
No 94
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=43.25 E-value=1.2e+02 Score=22.47 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.....+.|...+. ++...|-.+|.+|..+|+|+-.-
T Consensus 21 ~~~t~~eIa~~l~-----i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 21 GPATAEEIAEELG-----ISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp CHEEHHHHHHHHT-----SSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEc
Confidence 5578899999987 68999999999999999996544
No 95
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=43.00 E-value=34 Score=22.97 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.7
Q ss_pred hhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 221 YTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
-+|-+.+-.++|.+|-+.+..|+..
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999999974
No 96
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.67 E-value=66 Score=28.39 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=32.7
Q ss_pred CccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 211 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 211 p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
+......++|.+|..+...++|.+|..++..|+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 66 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE 66 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 4566778899999999999999999999999998654
No 97
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=42.21 E-value=91 Score=30.16 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=59.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhc-ChHHHHHHHHHHHHhcCc-c--------chHH
Q 015089 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCNP-Q--------SEAN 253 (413)
Q Consensus 184 fkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~~-~--------~~~n 253 (413)
.+.|+.+++..++.-++... +..+.-.......-.|-.|+-..-++ +|.+|-.+|+.|++.|.. . ...-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999986554421 01111123556777888999999999 999999999999998743 1 1134
Q ss_pred HHHHHHHHHHHHhhcCC
Q 015089 254 IRMILKYLIPVKLSIGI 270 (413)
Q Consensus 254 k~~IL~yLIpv~Ll~G~ 270 (413)
|-.||.+|+-+.+-.|.
T Consensus 83 r~~iL~~La~~~l~~~~ 99 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 55688888776554443
No 98
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.56 E-value=48 Score=31.27 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 223 GRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
|--.|-+|+|.+|...+++|+..||....
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 55567899999999999999999997765
No 99
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=41.00 E-value=1.1e+02 Score=22.49 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCcee
Q 015089 330 RLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 330 nL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~Ik 385 (413)
+.++-||.+.. +...++..+|+..|+ ++.-.|--++-.|-.+|+|.
T Consensus 8 ~YL~~Iy~l~~-----~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 8 DYLKAIYELSE-----EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHHHHHHHH-----CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-----CCCCccHHHHHHHHC-----CChHHHHHHHHHHHHCCCEE
Confidence 55677777763 347789999999998 57888888999999999984
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=40.64 E-value=2.3e+02 Score=27.75 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 170 ~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+.-++.--+.++-=-++++-+--++.-+... . +. .+.-..-.+..++..++|.+|++.|.+|+..-|.+
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~------~~--t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F------GS--TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c------CC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 455566666666666566888998898777543 2 21 12345667888999999999999999999754432
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCh--hhhcccc-ccchHHHHHHHHhCCHHHHHHHHHH
Q 015089 250 SEANIRMILKYLIPVKLSIGILPKD--WLLEKYN-LVEYSNIVQALRRGDLRLLRHALEE 306 (413)
Q Consensus 250 ~~~nk~~IL~yLIpv~Ll~G~~P~~--~ll~~~~-l~~y~~L~~air~Gdl~~f~~~l~~ 306 (413)
.-.|.-+|.+..++|+-+.. ..+++-. ..+-.+++..+..- -..||++..+
T Consensus 235 -----~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~-~~~FD~~~~k 288 (290)
T PF04733_consen 235 -----PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK-EAEFDRAVAK 288 (290)
T ss_dssp -----HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH-HHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHh
Confidence 23667799999999986432 2333311 12334455444422 2455555543
No 101
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.45 E-value=66 Score=27.48 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred hhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 221 YTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
-+|.-.+.+|++.+|-.||..|+.-||+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 467778889999999999999999999543
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=40.03 E-value=1.5e+02 Score=25.86 Aligned_cols=70 Identities=10% Similarity=-0.064 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
.....+-.+|.+.|+++.+...+...-.. .|.. ...........+..|+.+...+++.+|...+.+|+..
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALER-NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 35566788999999999999888433221 1211 1122334456666777777999999888888777653
No 103
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=39.60 E-value=5.1e+02 Score=27.86 Aligned_cols=64 Identities=6% Similarity=-0.099 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+-.+|+..|+++.+...++..-.. .| . .+..++.+|.++...++|.+|...+..|++..|..
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l-~P------~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDL-DP------D--FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-Cc------c--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 33455677788887777766322111 12 1 12345567888888888888888888888776644
No 104
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=38.22 E-value=62 Score=26.15 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.++|.+.+...+. ++...+--.+..|..+|+|+|+-
T Consensus 16 ~~~~~~~la~~l~-----~s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 16 ARISLAELAKKVG-----LSPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeceE
Confidence 5789999999997 68999999999999999998644
No 105
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=37.92 E-value=3.6e+02 Score=25.56 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=91.4
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 015089 77 PLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLM 156 (413)
Q Consensus 77 ~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~ 156 (413)
.|......+..+++.+|.+.+.+++. .+. .+.|.....+..+.. ... .+..+.+.....
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP--~s~~a~~a~l~la~a----------yy~-----~~~y~~A~~~~e 93 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN----RYP--FGPYSQQVQLDLIYA----------YYK-----NADLPLAQAAID 93 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCC--CChHHHHHHHHHHHH----------HHh-----cCCHHHHHHHHH
Confidence 45777778888999999988666543 222 344444433322221 110 122344444333
Q ss_pred HHHHhhhCCCCchhHHHHHHHHH--------HHHHHhcC----ChhhHHHHHHHhhc--cCCCCCCCCC---------cc
Q 015089 157 KVFGVLAGKGSKRVGALYLTCQL--------FKIYFKLG----TVHLCRSVIRSIET--ARIFDFEEFP---------KR 213 (413)
Q Consensus 157 ~~f~~~~~d~~Kk~~~~~l~n~l--------~kiYfkl~----~~~l~~~i~k~i~~--~~~p~~~~~p---------~~ 213 (413)
+..+. -+++.+-..++|+..+. +.-|+.+. +...++.-++.++. ...|+-+..+ +.
T Consensus 94 ~fi~~-~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 94 RFIRL-NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHh-CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 33222 23334445555555543 22333332 22334433333332 1244422222 23
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcC
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG 269 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G 269 (413)
.....-++.|++|+-.++|..|-.-+.+.+++.|.+.. ....|-+++-.-.-+|
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~--~~eal~~l~~ay~~lg 226 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA--TRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHcC
Confidence 44567789999999999999999999999999996553 4445555555444444
No 106
>PRK15331 chaperone protein SicA; Provisional
Probab=37.73 E-value=61 Score=29.26 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=32.3
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHH
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM 256 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~ 256 (413)
.||.|..++.-++..+|..+|..|..+|.....+.|-.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~ 145 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKAL 145 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 79999999999999999999999999877555555443
No 107
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=37.56 E-value=1e+02 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=29.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 386 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkG 386 (413)
.+.+...+...|. .+++-||.+|..++.+|.|.-
T Consensus 15 gr~s~~~Ls~~~~-----~p~~~VeaMLe~l~~kGkver 48 (78)
T PRK15431 15 GRMEAAQISQTLN-----TPQPMINAMLQQLESMGKAVR 48 (78)
T ss_pred CcccHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEe
Confidence 6788888888887 689999999999999999853
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=37.46 E-value=1.8e+02 Score=29.89 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=73.5
Q ss_pred hhHHHhhhhcChHHHHHHHHHHHHhcCccc-----------------hH-----------HHHHHHHHHHHHHhhc--CC
Q 015089 221 YTGRLEVFNENFPAADQKLSYALINCNPQS-----------------EA-----------NIRMILKYLIPVKLSI--GI 270 (413)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-----------------~~-----------nk~~IL~yLIpv~Ll~--G~ 270 (413)
-.|.+.+++|||.+|+..+..+=++-++.. .. +......+|.-+.+++ |+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 347778889999999999888776555310 01 1245666777777775 56
Q ss_pred CCChh-----hhcccccc-c--hHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH--HHHHhHHHHHHHHHHHHH
Q 015089 271 LPKDW-----LLEKYNLV-E--YSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL--VLEKLELQVYQRLFKKIY 336 (413)
Q Consensus 271 ~P~~~-----ll~~~~l~-~--y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyl--lle~lr~~v~rnL~kkv~ 336 (413)
+|... +++.-+.. . =..+--.++.|+.......+.+ +.|.|++. -..+++.-+|+++++..-
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~----L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK----LRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH----HHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 77543 22222221 1 1234456889999998888875 66777765 557889999998888753
No 109
>PRK12370 invasion protein regulator; Provisional
Probab=36.57 E-value=4.1e+02 Score=28.37 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred HHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 180 FKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
-.+|...|+++.+...++ +++-. | ... ..+|++|..++..|++.+|.+++..|++..|...
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~--P------~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS--P------ISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--C------CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 346778899999988874 33321 2 222 3568899999999999999999999999988654
No 110
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=36.38 E-value=2.9e+02 Score=30.28 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
.+.|.|+..|.|.|+++.+..++..+... +.++|.- +..-|...|++.+|.+.|.+..+
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----------d~~t~n~-lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRK-----------NLISWNA-LIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCC-----------CeeeHHH-HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777777777777777777554321 2233322 22335666777777777776554
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=36.30 E-value=2.1e+02 Score=24.52 Aligned_cols=63 Identities=8% Similarity=-0.165 Sum_probs=48.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+=..+++.|+++-+-..++..-.. -| . ...+++-+|..+...++|.+|...+..|+...|.+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~-~P------~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA-QP------W--SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CC------C--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345778899999888777543221 12 1 236788999999999999999999999999888655
No 112
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=36.28 E-value=1.1e+02 Score=33.47 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=35.2
Q ss_pred CCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 210 ~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
-|....+.=.||+..-+-.-++|..|.+++..|+.|||.
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 356777888999999999999999999999999999994
No 113
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=36.22 E-value=1.9e+02 Score=22.80 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHhCCHHHHHHHHHHc
Q 015089 282 LVEYSNIVQALRRGDLRLLRHALEEH 307 (413)
Q Consensus 282 l~~y~~L~~air~Gdl~~f~~~l~~~ 307 (413)
...+..|++||+.||.....+++..|
T Consensus 97 ~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 97 LEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34689999999999999999999876
No 114
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=35.44 E-value=63 Score=33.02 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=31.5
Q ss_pred CCccchhhhhhhhHHHhhhhcChHHHHHHHH--HHHHhcCc
Q 015089 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLS--YALINCNP 248 (413)
Q Consensus 210 ~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~--~A~~~c~~ 248 (413)
.|....+.++..+|++++.+++|.+|.++|. .|+...|.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 3444445789999999999999999999999 68776663
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=34.35 E-value=71 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.7
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+-+++|.+|.+.|..++...|.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH
Confidence 567899999999999999988544
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=33.98 E-value=3.7e+02 Score=24.51 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHhcCC--hhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 182 IYFKLGT--VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 182 iYfkl~~--~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.|++.|+ .+.+..+++..-.. -|. -++.++.+|..++..++|.+|..++..+++.-|++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~-dP~--------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALAL-DAN--------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHh-CCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3567777 47777777433222 121 236789999999999999999999999999888655
No 117
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=33.83 E-value=1.9e+02 Score=27.49 Aligned_cols=88 Identities=11% Similarity=-0.036 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++.+.+.++.+.--+| -.+.+.+..++...|+.+.++.+++...... | ... .+....|..+
T Consensus 161 ~~~~A~~~~~~al~~~P~~-------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~------~~~--~~~~~la~~~ 224 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDD-------PDARNALAWLLIDMGDYDEAREALKRLLKAA-P------DDP--DLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H------TSC--CHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c------CHH--HHHHHHHHHh
Confidence 3445555555554432222 2355667778889999998888887776542 2 111 3667779999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+.-+++.+|..+|..+.+.-|.+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred cccccccccccccccccccccccc
Confidence 999999999999999999776544
No 118
>PLN03077 Protein ECB2; Provisional
Probab=33.73 E-value=4.3e+02 Score=29.80 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 015089 70 PFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLK 149 (413)
Q Consensus 70 ~~~evv~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le 149 (413)
.|..++..|.+ .+.+.+|.+.+.++...=+. .+..+...+...|. ..+.++
T Consensus 255 s~n~li~~~~~------~g~~~eAl~lf~~M~~~g~~-----Pd~~ty~~ll~a~~------------------~~g~~~ 305 (857)
T PLN03077 255 SWNAMISGYFE------NGECLEGLELFFTMRELSVD-----PDLMTITSVISACE------------------LLGDER 305 (857)
T ss_pred hhHHHHHHHHh------CCCHHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHH------------------hcCChH
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhh
Q 015089 150 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN 229 (413)
Q Consensus 150 ~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~ 229 (413)
.+.++...+.+.-...+ .++.|.|+..|.+.|+++.+..++..+ +..+.++|. -+..-+...
T Consensus 306 ~a~~l~~~~~~~g~~~d------~~~~n~Li~~y~k~g~~~~A~~vf~~m-----------~~~d~~s~n-~li~~~~~~ 367 (857)
T PLN03077 306 LGREMHGYVVKTGFAVD------VSVCNSLIQMYLSLGSWGEAEKVFSRM-----------ETKDAVSWT-AMISGYEKN 367 (857)
T ss_pred HHHHHHHHHHHhCCccc------hHHHHHHHHHHHhcCCHHHHHHHHhhC-----------CCCCeeeHH-HHHHHHHhC
Q ss_pred cChHHHHHHHHH
Q 015089 230 ENFPAADQKLSY 241 (413)
Q Consensus 230 ~~~~~A~~~L~~ 241 (413)
+++.+|.+.|.+
T Consensus 368 g~~~~A~~lf~~ 379 (857)
T PLN03077 368 GLPDKALETYAL 379 (857)
T ss_pred CCHHHHHHHHHH
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.32 E-value=44 Score=34.24 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=30.2
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
--.+++|++++-++.|.+|.++|..|++.-|...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 5789999999999999999999999998766544
No 120
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=33.11 E-value=99 Score=27.93 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=38.0
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCC
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGI 270 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~ 270 (413)
.=+.-+|.+|+--||+.+|.+++..+...|. +.+++--+...+|=+.+..|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHhCC
Confidence 4456789999999999999999999999986 334454455555555554443
No 121
>PHA02608 67 prohead core protein; Provisional
Probab=33.04 E-value=1.9e+02 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 015089 286 SNIVQALRRGDLRLLRHALE 305 (413)
Q Consensus 286 ~~L~~air~Gdl~~f~~~l~ 305 (413)
..|+.|||+|||..-.+...
T Consensus 2 e~lIeAIKS~DLV~akK~F~ 21 (80)
T PHA02608 2 EDLIEAIKSGDLVEAKKEFA 21 (80)
T ss_pred hHHHHHHhcCcHHHHHHHHH
Confidence 47899999999976555443
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=33.00 E-value=4.1e+02 Score=28.49 Aligned_cols=128 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHH
Q 015089 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK 259 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~ 259 (413)
..++...|.++-|=..+...++. .-+.+.+....|++++--|++.+|+..+..=++.+|.+..--....--
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~---------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ---------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q ss_pred H--------------HHHHHhhcCCCCChhhhccccccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHH
Q 015089 260 Y--------------LIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLEL 325 (413)
Q Consensus 260 y--------------LIpv~Ll~G~~P~~~ll~~~~l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~ 325 (413)
. +-...=+..++|.....++.+|.... |+ .|...++.+=..++++|+=.+...++.
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~--------g~--~F~~~~~~yl~~~l~KgvPslF~~lk~ 151 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE--------GD--EFKERLDEYLRPQLRKGVPSLFSNLKP 151 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC--------HH--HHHHHHHHHHHHHHhcCCchHHHHHHH
Q ss_pred H
Q 015089 326 Q 326 (413)
Q Consensus 326 ~ 326 (413)
+
T Consensus 152 L 152 (517)
T PF12569_consen 152 L 152 (517)
T ss_pred H
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=32.77 E-value=69 Score=33.60 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=31.4
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLI 262 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLI 262 (413)
.=.||.|.+.+..|+..+|.+++..|++.-| .+-+--|+|..|
T Consensus 373 ~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP---~~~~~~~~~~~~ 415 (458)
T PRK11906 373 SLYYYRALVHFHNEKIEEARICIDKSLQLEP---RRRKAVVIKECV 415 (458)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCc---hhhHHHHHHHHH
Confidence 4578888888888999999999998888877 233344555544
No 124
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=32.69 E-value=73 Score=23.66 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=29.1
Q ss_pred cccHHHHHHHHhhc--c---CCCCHHHHHHHHHHHHHcCcee
Q 015089 349 QMKLDVIVKALKWL--E---MDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 349 ~i~l~~~~~al~~~--~---~~~d~~evEcila~LI~~G~Ik 385 (413)
.+|++.|..-|+.. + .+.+.+|++..|..++.+|.+.
T Consensus 11 sl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L~ 52 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKLE 52 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 38999999888865 2 2478999999999999999874
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=1e+02 Score=30.21 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=36.8
Q ss_pred HHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCC
Q 015089 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP 272 (413)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P 272 (413)
+..++..++|.+|+.-|..|+..-+.. --.|.-+|.+.+.+|+=|
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~d-----petL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKD-----PETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCCh
Confidence 346899999999999999999987755 345667889999999854
No 126
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=31.06 E-value=4.3e+02 Score=31.11 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++...+-.++++.++++.+...++..-.. .| .. ..-++.+|.+++.++++.+|.+++..|++.-|...
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P------~~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQV-DN------TD--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34445567889999999999998544332 12 11 23466789999999999999999999999877654
No 127
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=30.98 E-value=4.4e+02 Score=28.91 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchH
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (413)
.+-.+|.+.|+++.+...++.+-.. .|. ...+.++.|..+...|++.+|..+|..|++..|.....
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~-~P~--------~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE-KGV--------TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 3556777788888777777544322 121 12455666777888888888888888888887765543
No 128
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=30.85 E-value=1.2e+02 Score=20.65 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCcee
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~Ik 385 (413)
..++...++..+. ++..-|-..+-.|+.+|+|+
T Consensus 16 ~~~t~~ela~~~~-----is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 16 PRITQKELAEKLG-----ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp TTS-HHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhC-----CCHHHHHHHHHHHHHCcCcC
Confidence 5689999999987 67888999999999999986
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=30.07 E-value=3.2e+02 Score=26.62 Aligned_cols=66 Identities=6% Similarity=-0.069 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
.....+-.+|...|+++.+...+...-.. .|. +....+...+..|++++..|++.+|...+..+..
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDT-WDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34566678899999999999887543222 121 1122334566799999999999999999999964
No 130
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.69 E-value=2.4e+02 Score=27.15 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=29.9
Q ss_pred cccchH-HHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH-HHHHhHH
Q 015089 281 NLVEYS-NIVQALRRGDLRLLRHALEEHEDQFLRSGVYL-VLEKLEL 325 (413)
Q Consensus 281 ~l~~y~-~L~~air~Gdl~~f~~~l~~~~~~f~k~glyl-lle~lr~ 325 (413)
++..|. -|+.++.+|+...|....++++..+-++..|. .++++..
T Consensus 190 PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~ 236 (260)
T PF04190_consen 190 PLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQ 236 (260)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 445564 46899999999999999999998876665444 4455544
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=29.65 E-value=2.3e+02 Score=28.54 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=46.7
Q ss_pred HHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 180 FKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
-..+|+-+++..|-..++ +++.. |. -..+++..|..++..++|.+|...+..|+...|....
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 355677888888887774 33321 21 1357789999999999999999999999999885543
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=29.33 E-value=83 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=24.0
Q ss_pred hhhhhhhhHHHhhhhcChHHHHHHHHH
Q 015089 215 KVTYMYYTGRLEVFNENFPAADQKLSY 241 (413)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (413)
.-.|.|++|..++-.++|.+|.+.+..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 335888899999999999999999988
No 133
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=29.07 E-value=3.8e+02 Score=25.95 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=29.8
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchH
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (413)
+.-.|=.|.-.+..|+|.+|.++|.......|-+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~ 70 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS 70 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 4567888888999999999999999888877754433
No 134
>PF12854 PPR_1: PPR repeat
Probab=27.83 E-value=1e+02 Score=19.67 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHh
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSI 199 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i 199 (413)
.+..|.++..|.|.|+.+.|..+++.+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 357899999999999999999998654
No 135
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=27.74 E-value=97 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.9
Q ss_pred cchhhhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
..+..-....|.+.+.+|||.+|++++..|-+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344556678999999999999999999999665
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.48 E-value=1.8e+02 Score=28.34 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+.-++.|. -|++..+..-|+..-.. .|.-...| .=+|++|..++-+++|.+|-..|..+.+..|++.
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~-YP~s~~~~-----nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKK-YPNSTYTP-----NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHc-CCCCcccc-----hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 5666666654 56699999888665432 34321122 3479999999999999999999999999888554
No 137
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=26.95 E-value=2.8e+02 Score=21.99 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHhhc--cCC-CCHHHHHHHHHHHHHcCce
Q 015089 348 HQMKLDVIVKALKWL--EMD-MDVDEVECIVAILIHKNLV 384 (413)
Q Consensus 348 ~~i~l~~~~~al~~~--~~~-~d~~evEcila~LI~~G~I 384 (413)
.....+.+...|.-. +.. -+.|-+...|++||.+|+|
T Consensus 28 ~~at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkI 67 (80)
T PF10264_consen 28 QPATQETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKI 67 (80)
T ss_pred CcchHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCce
Confidence 456677777777533 222 4788999999999999988
No 138
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.83 E-value=1.8e+02 Score=21.95 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=19.9
Q ss_pred HHHHHHhCCHHHHHHHHHHcHHH
Q 015089 288 IVQALRRGDLRLLRHALEEHEDQ 310 (413)
Q Consensus 288 L~~air~Gdl~~f~~~l~~~~~~ 310 (413)
+++|+++||+..|.+.+.++...
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~ 23 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN 23 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh
Confidence 47899999999999999987653
No 139
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=26.38 E-value=8.5e+02 Score=26.36 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHH
Q 015089 114 AWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR 193 (413)
Q Consensus 114 ~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~ 193 (413)
+|-+|+-..+-..++......+ | .+.++.|...|.|.-..|...+ =-.--+...-++.++|++.|... +.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~-e-------T~n~~~Ae~~L~k~~~l~~~~~-~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLE-E-------TENLDLAETYLEKAILLCERHR-LTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH-H-------cCCHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 5777777665555554333333 2 2356777778888777776521 01112455557799999999888 65
Q ss_pred HHH-HHhhccCCCCCCCCCcc-chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCC
Q 015089 194 SVI-RSIETARIFDFEEFPKR-DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 194 ~i~-k~i~~~~~p~~~~~p~~-~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~ 271 (413)
+.+ +.|+... .++.. -...|+|..-.+++..+|+..|.+.|......+...+...-+ ++-.++=..+.+..-
T Consensus 120 ~~l~~~I~~~~-----~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~-v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 120 KNLDKAIEDSE-----TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF-VLASLSEALLHLRRG 193 (608)
T ss_pred HHHHHHHHHHh-----ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHHhcCC
Confidence 555 4454332 22222 234566654555555579999999999999877544333322 222222222333322
Q ss_pred -CChh--hhc-------cc---------cccc---hHHHHHHHHhCCHHHHHHHHHHcH
Q 015089 272 -PKDW--LLE-------KY---------NLVE---YSNIVQALRRGDLRLLRHALEEHE 308 (413)
Q Consensus 272 -P~~~--ll~-------~~---------~l~~---y~~L~~air~Gdl~~f~~~l~~~~ 308 (413)
|... .++ ++ .+.. ..+++..+..|+++.-.+.|.+-+
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2211 111 12 1222 368899999999665555555443
No 140
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=26.19 E-value=86 Score=36.35 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=40.1
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCCh
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKD 274 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~ 274 (413)
-++.|+|-.|+.+..+|||.+|+..|..|++.-|.+.. +...|.-.-+-.|+.+.-
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~-----~~~~LA~~yl~~g~~~~A 97 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIP-----LTLYLAEAYRHFGHDDRA 97 (987)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHCCCHHHH
Confidence 35778888899999999999999999999988876532 224444445556666544
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=26.17 E-value=4.3e+02 Score=22.85 Aligned_cols=68 Identities=15% Similarity=0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i-~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
......+...|+..++++.+-..++.. ... |+ | .+...-.+.+|.++...+++.+|.+.+..|+..-|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~----~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--ID----P-YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cc----c-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 445556677899999999988887433 221 21 1 12334678899999999999999999999998644
No 142
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=25.86 E-value=45 Score=21.38 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=18.4
Q ss_pred hhhhhhHHHhhhhcChHHHHH
Q 015089 217 TYMYYTGRLEVFNENFPAADQ 237 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~ 237 (413)
..+|.+|.++...|++.+|.+
T Consensus 14 ~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhcC
Confidence 578899999999999999963
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=4.7e+02 Score=25.61 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 172 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
..++.-+.|-.-.-.+..+++...++.+.. +||.|.+|.=. .|...=..++|.+|.+.+..=+..-|.+..
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~l--kam~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKL--KAMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHH--HHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 344555666666778999999999988864 46788886322 233444568999999999999988887776
Q ss_pred HHHHHH
Q 015089 252 ANIRMI 257 (413)
Q Consensus 252 ~nk~~I 257 (413)
..||++
T Consensus 122 ~~KRKl 127 (289)
T KOG3060|consen 122 IRKRKL 127 (289)
T ss_pred HHHHHH
Confidence 666654
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=25.66 E-value=2.3e+02 Score=29.86 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchh-hhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKV-TYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v-~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
....+.+=..|+++|+++-+-..++ +++-. |+ .... .-+|.+|-.|...+++.+|.++|..|+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555567899999999998884 45432 22 1111 23699999999999999999999999985
No 145
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=25.19 E-value=5e+02 Score=29.00 Aligned_cols=68 Identities=7% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
+...+-.+|.+.|+++.|...++..... . |. -..++|..|..++-.++|.+|+..+..+...-|++..
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l-~------Pd--~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVL-E------PR--NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-C------CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 5566667999999999999999765443 1 22 2358999999999999999999999999999887663
No 146
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=24.23 E-value=5.9e+02 Score=24.65 Aligned_cols=69 Identities=10% Similarity=-0.106 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 171 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 171 ~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
...+....+-.+|...|+++.+...++..-.. .|. . ......+|.++...+++.+|..++..+....|.
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~p~------~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-NPD------D--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------C--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 33556667777899999999998888543222 122 1 356778899999999999999999999987764
No 147
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=24.00 E-value=1.8e+02 Score=20.31 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.8
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcH
Q 015089 285 YSNIVQALRRGDLRLLRHALEEHEDQFLRSGV 316 (413)
Q Consensus 285 y~~L~~air~Gdl~~f~~~l~~~~~~f~k~gl 316 (413)
...+.++|..||+..-.++++.+...+.+.+-
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~ 36 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS 36 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC
Confidence 45688999999999999999999887766643
No 148
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.63 E-value=1.8e+02 Score=29.60 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=30.4
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...++..|++++-+++|.+|.++|..++..-|..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 3589999999999999999999999999987643
No 149
>PLN03218 maturation of RBCL 1; Provisional
Probab=23.09 E-value=1.3e+03 Score=27.24 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH-----------HHHHHHhcc-CccccHHHHHHHHH-----HHHHHHHH
Q 015089 71 FADITVPLFRSLQHYRTGNLVDAYLAFEKSAN-----------AFIQEFRNW-ESAWALEALYVIAY-----EIRVLAER 133 (413)
Q Consensus 71 ~~evv~~~l~~~~~~~~~~~~~a~~~~~~~~~-----------~l~~~~~~~-~~~W~lp~L~~~~~-----~l~~la~~ 133 (413)
|..++..|.+ .+++++|.+.+.++.. .++.++... +..-....+..+.. +.......
T Consensus 617 ynsLI~ay~k------~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 617 YTIAVNSCSQ------KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHHh-hhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCc
Q 015089 134 ADRELASNGKSPEKLKAAGSFLMKVFGV-LAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPK 212 (413)
Q Consensus 134 ~D~~~~~~~~~~~~le~~a~~l~~~f~~-~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~ 212 (413)
++... +.+.+++|..++.++-.. +..| ....|.++..|.+.|+++.+..+++.+....+.+
T Consensus 691 I~ay~-----k~G~~eeA~~lf~eM~~~g~~Pd-------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P------ 752 (1060)
T PLN03218 691 MGACS-----NAKNWKKALELYEDIKSIKLRPT-------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP------ 752 (1060)
T ss_pred HHHHH-----hCCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------
Q ss_pred cchhhhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
+.+||.-.+ ..+...+++.+|.+.+.++.+.
T Consensus 753 -d~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 753 -NTITYSILL-VASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -CHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHc
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=22.86 E-value=4.2e+02 Score=27.35 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (413)
+.+.+..-+.+.+.+++++|-.+.+..-.. .| ++. ...|++++.|...++|++|-. |+..||-...+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP-------~~f-~~W~~La~~Yi~~~d~e~ALl----aLNs~Pm~~~~ 300 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL-SP-------SEF-ETWYQLAECYIQLGDFENALL----ALNSCPMLTYK 300 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-Cc-------hhH-HHHHHHHHHHHhcCCHHHHHH----HHhcCcCCCCc
Confidence 667888888999999999999987533222 12 122 567789999999999999984 55577744333
Q ss_pred HHHHHHHHHHHHH
Q 015089 253 NIRMILKYLIPVK 265 (413)
Q Consensus 253 nk~~IL~yLIpv~ 265 (413)
. +-.++-..|..
T Consensus 301 ~-k~~~~~~~p~~ 312 (395)
T PF09295_consen 301 D-KYKLKRPVPAK 312 (395)
T ss_pred c-chhhhcCCCcc
Confidence 3 23334444443
No 151
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.26 E-value=6.2e+02 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.007 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCc--cchhhhhhh----hHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPK--RDKVTYMYY----TGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~--~~~v~y~YY----~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
....+-.+|++.++++.+...++..-.. .|......+ +...+-+|+ .|..++-.+++.+|.+.+..|....|.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALAL-DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4455668999999999999888543222 232110000 011112333 377889999999999999999998875
Q ss_pred cc
Q 015089 249 QS 250 (413)
Q Consensus 249 ~~ 250 (413)
+.
T Consensus 384 ~~ 385 (1157)
T PRK11447 384 DS 385 (1157)
T ss_pred CH
Confidence 43
No 152
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=1e+02 Score=33.21 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHH-----------HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHH
Q 015089 170 VGALYLTCQLFK-----------IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQK 238 (413)
Q Consensus 170 ~~~~~l~n~l~k-----------iYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~ 238 (413)
..+|+.+..++. -|.++||.++++.+++.--. + +| ++.+. +=++|.+++-.++|.+|..+
T Consensus 366 maaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i-----~P-~Dplv-~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 366 MAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I-----AP-SDPLV-LHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c-----CC-Ccchh-hhhhhheeehHhhhHHHHHH
Confidence 455555655553 37789999999999853321 1 12 23333 34689999999999999999
Q ss_pred HHHHHH
Q 015089 239 LSYALI 244 (413)
Q Consensus 239 L~~A~~ 244 (413)
|..|+.
T Consensus 437 f~~~l~ 442 (611)
T KOG1173|consen 437 FQKALE 442 (611)
T ss_pred HHHHHH
Confidence 999984
No 153
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=21.87 E-value=1e+03 Score=25.55 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=83.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH---HHHHHh
Q 015089 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFL---MKVFGV 161 (413)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l---~~~f~~ 161 (413)
.+.+++.+|...+.+.+.-....+-+ ..|.... -+..+|...... ++.+++...+ ++++..
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~-----~h~~va~---~l~nLa~ly~~~--------GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGE-----DHPAVAA---TLNNLAVLYYKQ--------GKFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCC-----CCHHHHH---HHHHHHHHHhcc--------CChHHHHHHHHHHHHHHHH
Confidence 45678999999999999877777754 3333332 233344333221 1222222222 222333
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCcc--chhhhhhhhHHHhhhhcChHHHHH
Q 015089 162 LAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKR--DKVTYMYYTGRLEVFNENFPAADQ 237 (413)
Q Consensus 162 ~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~--~~v~y~YY~Gr~~~~~~~~~~A~~ 237 (413)
......++ +-...+.+--+|-..|.++.+..+++ +++-- +.| ... ...-++==+|.++...|+|.+|++
T Consensus 316 ~~~~~~~~--v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~-----g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 316 LLGASHPE--VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP-----GEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred hhccChHH--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc-----cccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 22222333 33456677778888999999998884 22211 112 222 233455568999999999999999
Q ss_pred HHHHHHHhcC
Q 015089 238 KLSYALINCN 247 (413)
Q Consensus 238 ~L~~A~~~c~ 247 (413)
.+..|+..-+
T Consensus 389 ~~k~ai~~~~ 398 (508)
T KOG1840|consen 389 LYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 154
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=21.80 E-value=3.5e+02 Score=20.20 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc---cCCCCHHHHHHHHHHHHHcCcee
Q 015089 323 LELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL---EMDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 323 lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~---~~~~d~~evEcila~LI~~G~Ik 385 (413)
-|...+...+-|+.... .++..+.+.....-. .-..+..++.--+-.||.+|||+
T Consensus 4 ~R~~~I~AaIVrimK~~--------k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIekeyi~ 61 (68)
T PF10557_consen 4 DRKYQIDAAIVRIMKQE--------KKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIEKEYIE 61 (68)
T ss_dssp HHHHHHHHHHHHHHHHS--------SEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHHTTSEE
T ss_pred hhhhhhhhheehhhhhc--------CceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhhhhh
Confidence 34444444444444433 456666655544211 11367889999999999999985
No 155
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=21.75 E-value=1e+03 Score=25.54 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHh-hhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCccchhhhhhhhH
Q 015089 147 KLKAAGSFLMKVFGV-LAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPKRDKVTYMYYTG 223 (413)
Q Consensus 147 ~le~~a~~l~~~f~~-~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p~~~~~p~~~~v~y~YY~G 223 (413)
.+|.+-.....+.+. |...+.+...+....+.+=..|..++++..+.++++ ++.-.. +-- -.-.+.++.+-=+|
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G---~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG---EDHPAVAATLNNLA 290 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHH
Confidence 444444444444443 233345566677778888899999999999999984 332210 100 01235678888899
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHhhcCCC
Q 015089 224 RLEVFNENFPAADQKLSYALINCNP---QSEANIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~---~~~~nk~~IL~yLIpv~Ll~G~~ 271 (413)
..|.-+|+|.+|+.++..|++-.-. ...+.-..-|..++.+-..+|++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999975433 22233333344444444444544
No 156
>PHA02992 hypothetical protein; Provisional
Probab=21.64 E-value=7e+02 Score=27.77 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=35.6
Q ss_pred chHHHHHH-HHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHH
Q 015089 284 EYSNIVQA-LRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQ 326 (413)
Q Consensus 284 ~y~~L~~a-ir~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~ 326 (413)
.|.+|+.. .+.-|+..|.+.++=|..++++...+.++-|+-..
T Consensus 69 ~f~DLi~~i~~~~nve~ya~HI~fhk~~ilq~~~~~li~kCi~y 112 (728)
T PHA02992 69 LFIDLISVITKQKNVELYASHINFHKNEILQKCDKSLIAKCIPY 112 (728)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHhHHHHHHhcCHHHHHHHhhh
Confidence 47787655 47899999999999999999999988888776554
No 157
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=21.59 E-value=2e+02 Score=24.39 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=27.0
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHcHHHHHHhc
Q 015089 284 EYSNIVQALRRGDLRLLRHALEEHEDQFLRSG 315 (413)
Q Consensus 284 ~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~g 315 (413)
....+.++|+.||+..--++++++...+.+.+
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~ 35 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRN 35 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC
Confidence 45678999999999999999999887777664
No 158
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.90 E-value=1.2e+02 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.6
Q ss_pred hhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 215 KVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
.+.=.|.-|+++.-.||+..|+.++++|.-
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g 69 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYAHG 69 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444567789999999999999999999975
No 159
>PRK14574 hmsH outer membrane protein; Provisional
Probab=20.44 E-value=6.5e+02 Score=28.69 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCccchhhhhhh
Q 015089 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYY 221 (413)
Q Consensus 149 e~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~-------~~~~p~~~~v~y~YY 221 (413)
+++..++..++..-. +......-+.....||-.|...++++.+..++..+... .|. -..-|..+..++..-
T Consensus 344 ~kA~~l~~~~~~~~~-~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 344 EKAAPILSSLYYSDG-KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred HHHHHHHHHHhhccc-cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHH
Q ss_pred hHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 222 TGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
.+..++..+++.+|++.|+......|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
No 160
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=20.15 E-value=2.5e+02 Score=19.50 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=28.3
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCcee
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~Ik 385 (413)
..+++.++..++. ++...+--++..|...|+++
T Consensus 17 ~~~t~~eia~~~g-----l~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 17 GPLTLSEIARALG-----LPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp SCEEHHHHHHHHT-----S-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCcCee
Confidence 4479999999997 57888999999999999985
No 161
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=20.10 E-value=26 Score=25.88 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhcCC
Q 015089 257 ILKYLIPVKLSIGI 270 (413)
Q Consensus 257 IL~yLIpv~Ll~G~ 270 (413)
||.+|||+++++|-
T Consensus 3 ~l~~Lipvsi~l~~ 16 (58)
T COG3197 3 ILYILIPVSILLGA 16 (58)
T ss_pred eeeeHHHHHHHHHH
Confidence 67889999998874
No 162
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=20.01 E-value=2.1e+02 Score=31.98 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChhhHHH--HHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 177 CQLFKIYFKLGTVHLCRS--VIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~--i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
.-+=++|.+.|+..++.. +++..=.-+ |..+ .--||+|.+...+||..+|-++|+.|...
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d-------p~n~--eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD-------PLNH--EAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC-------CCCH--HHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 345678888999988887 664321111 2222 46899999999999999999999999964
Done!