Query 015089
Match_columns 413
No_of_seqs 198 out of 590
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 5.9E-82 2E-86 647.3 30.5 387 10-409 1-442 (455)
2 3t5x_A PCI domain-containing p 100.0 5.3E-59 1.8E-63 431.8 21.5 196 208-409 6-202 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 2.7E-45 9.2E-50 377.6 19.4 308 70-400 132-447 (523)
4 3txn_A 26S proteasome regulato 99.8 7.4E-19 2.5E-23 177.3 26.8 237 147-401 114-363 (394)
5 4b4t_O 26S proteasome regulato 99.7 8.4E-16 2.9E-20 155.4 15.9 217 170-402 124-355 (393)
6 4b4t_P 26S proteasome regulato 99.6 3.1E-14 1.1E-18 146.2 19.3 239 146-400 151-405 (445)
7 4b4t_Q 26S proteasome regulato 99.5 8.2E-12 2.8E-16 124.1 24.7 235 147-399 150-401 (434)
8 4b4t_R RPN7, 26S proteasome re 99.4 5.9E-12 2E-16 128.5 18.7 230 148-401 147-394 (429)
9 4b0z_A RPN12, 26S proteasome r 98.7 9.2E-08 3.1E-12 89.5 11.2 180 180-377 14-214 (229)
10 3chm_A COP9 signalosome comple 98.1 9.8E-06 3.4E-10 72.1 9.2 94 284-400 61-157 (169)
11 1ufm_A COP9 complex subunit 4; 98.0 1.9E-05 6.6E-10 62.0 7.2 51 348-403 29-79 (84)
12 3gw4_A Uncharacterized protein 95.3 0.7 2.4E-05 39.2 15.5 148 79-250 31-181 (203)
13 3ulq_A Response regulator aspa 95.0 0.47 1.6E-05 45.5 14.9 174 74-271 103-280 (383)
14 3q15_A PSP28, response regulat 94.7 0.63 2.2E-05 44.7 14.7 173 76-271 103-277 (378)
15 3ro3_A PINS homolog, G-protein 94.6 1.3 4.6E-05 35.2 14.6 141 84-248 19-161 (164)
16 1qqe_A Vesicular transport pro 94.2 2.5 8.4E-05 39.1 17.3 216 71-309 33-265 (292)
17 3nf1_A KLC 1, kinesin light ch 93.6 2.9 9.8E-05 37.6 16.2 148 85-248 122-310 (311)
18 3nf1_A KLC 1, kinesin light ch 93.5 4 0.00014 36.6 17.1 145 85-248 80-227 (311)
19 1hh8_A P67PHOX, NCF-2, neutrop 92.9 2.9 9.8E-05 35.8 14.4 105 147-259 52-164 (213)
20 3sf4_A G-protein-signaling mod 92.8 5.3 0.00018 37.4 17.3 121 147-273 242-365 (406)
21 2qfc_A PLCR protein; TPR, HTH, 92.8 4.5 0.00015 37.1 16.4 100 147-250 170-271 (293)
22 4gco_A Protein STI-1; structur 92.6 0.87 3E-05 36.8 9.9 87 147-250 28-115 (126)
23 3edt_B KLC 2, kinesin light ch 92.5 2.2 7.5E-05 37.6 13.5 145 84-248 53-201 (283)
24 3ro2_A PINS homolog, G-protein 92.0 4.6 0.00016 36.3 15.3 97 147-248 238-335 (338)
25 4a1s_A PINS, partner of inscut 91.7 7.1 0.00024 37.0 16.8 143 85-251 234-378 (411)
26 3ro3_A PINS homolog, G-protein 91.5 1.5 5.2E-05 34.8 10.2 97 147-249 24-122 (164)
27 3u3w_A Transcriptional activat 91.5 3.6 0.00012 37.8 14.1 97 147-248 130-228 (293)
28 3gyz_A Chaperone protein IPGC; 91.5 3 0.0001 35.0 12.4 91 147-254 51-142 (151)
29 3sz7_A HSC70 cochaperone (SGT) 91.2 2.6 8.8E-05 34.9 11.7 88 147-251 26-114 (164)
30 3u3w_A Transcriptional activat 91.2 6.5 0.00022 36.0 15.6 97 147-247 170-268 (293)
31 2vyi_A SGTA protein; chaperone 91.1 3.3 0.00011 31.5 11.6 88 147-250 27-114 (131)
32 3qky_A Outer membrane assembly 91.1 4 0.00014 36.4 13.7 145 77-250 18-182 (261)
33 2vgx_A Chaperone SYCD; alterna 91.1 2.8 9.4E-05 34.7 11.7 64 177-249 59-122 (148)
34 2xcb_A PCRH, regulatory protei 90.9 3.1 0.00011 33.6 11.7 64 177-249 56-119 (142)
35 4a1s_A PINS, partner of inscut 90.8 9.6 0.00033 36.0 16.8 97 148-249 199-296 (411)
36 2xev_A YBGF; tetratricopeptide 90.8 2.9 0.0001 32.4 11.1 69 177-251 43-111 (129)
37 2fbn_A 70 kDa peptidylprolyl i 90.6 7.3 0.00025 33.1 14.5 95 147-250 53-156 (198)
38 4ga2_A E3 SUMO-protein ligase 90.4 0.96 3.3E-05 37.6 8.1 62 179-250 37-99 (150)
39 2lni_A Stress-induced-phosphop 90.4 2.3 8E-05 32.8 10.1 68 174-250 51-118 (133)
40 2yhc_A BAMD, UPF0169 lipoprote 90.4 8.6 0.0003 33.6 17.2 66 184-250 107-181 (225)
41 3ma5_A Tetratricopeptide repea 90.1 1.3 4.6E-05 33.8 8.2 66 176-250 10-75 (100)
42 3ieg_A DNAJ homolog subfamily 90.1 11 0.00037 34.3 16.2 92 147-250 249-340 (359)
43 3q15_A PSP28, response regulat 89.9 8.7 0.0003 36.4 15.6 98 147-250 197-295 (378)
44 3edt_B KLC 2, kinesin light ch 89.9 9.5 0.00032 33.3 17.4 146 84-245 95-281 (283)
45 2qfc_A PLCR protein; TPR, HTH, 89.8 9.6 0.00033 34.8 15.3 96 147-247 130-227 (293)
46 2ifu_A Gamma-SNAP; membrane fu 89.6 13 0.00043 34.4 18.3 128 171-303 114-254 (307)
47 3k9i_A BH0479 protein; putativ 89.5 3 0.0001 32.4 10.1 69 173-250 27-95 (117)
48 3q49_B STIP1 homology and U bo 89.4 1.3 4.5E-05 35.0 7.9 86 147-248 24-109 (137)
49 2kck_A TPR repeat; tetratricop 89.3 2.5 8.6E-05 31.4 9.2 89 147-249 21-110 (112)
50 1na0_A Designed protein CTPR3; 89.2 5.7 0.00019 29.8 11.6 88 147-250 24-111 (125)
51 3ro2_A PINS homolog, G-protein 89.2 12 0.0004 33.5 17.1 97 148-250 159-257 (338)
52 2dba_A Smooth muscle cell asso 89.1 4.3 0.00015 32.0 10.9 91 147-250 43-133 (148)
53 2xev_A YBGF; tetratricopeptide 88.8 2.1 7.3E-05 33.3 8.7 65 179-249 8-72 (129)
54 3hym_B Cell division cycle pro 88.8 4.2 0.00014 36.8 11.9 75 174-250 194-270 (330)
55 4i17_A Hypothetical protein; T 88.7 11 0.00038 32.5 14.6 73 174-248 77-149 (228)
56 3rkv_A Putative peptidylprolyl 88.7 5.8 0.0002 32.5 11.8 68 173-250 63-131 (162)
57 2kc7_A BFR218_protein; tetratr 88.6 2.1 7.1E-05 31.9 8.2 63 180-251 7-70 (99)
58 1elw_A TPR1-domain of HOP; HOP 88.3 4.6 0.00016 30.1 10.1 88 147-250 19-106 (118)
59 3as5_A MAMA; tetratricopeptide 88.2 5.6 0.00019 32.3 11.4 87 147-249 57-143 (186)
60 3gw4_A Uncharacterized protein 88.0 7.5 0.00026 32.5 12.3 97 147-248 41-139 (203)
61 3upv_A Heat shock protein STI1 87.9 3.6 0.00012 32.1 9.5 83 147-246 19-102 (126)
62 3ulq_A Response regulator aspa 87.9 18 0.00063 34.1 18.1 98 147-250 199-298 (383)
63 1na3_A Designed protein CTPR2; 87.8 4 0.00014 29.4 9.2 67 175-250 11-77 (91)
64 2ho1_A Type 4 fimbrial biogene 87.6 13 0.00045 32.2 16.8 89 147-249 86-174 (252)
65 1hz4_A MALT regulatory protein 87.5 14 0.00048 34.5 15.1 121 147-272 68-191 (373)
66 2l6j_A TPR repeat-containing p 87.5 5.3 0.00018 29.8 10.0 63 177-249 8-71 (111)
67 1elr_A TPR2A-domain of HOP; HO 87.2 5.4 0.00018 30.3 10.1 93 147-248 19-111 (131)
68 2fo7_A Synthetic consensus TPR 87.2 8 0.00027 29.2 11.2 65 176-249 38-102 (136)
69 2kat_A Uncharacterized protein 87.2 2.7 9.2E-05 32.4 8.2 67 175-250 21-87 (115)
70 4gco_A Protein STI-1; structur 87.1 2.6 8.9E-05 33.8 8.3 62 179-250 19-81 (126)
71 3sf4_A G-protein-signaling mod 87.1 19 0.00065 33.4 17.8 118 148-271 163-283 (406)
72 2y4t_A DNAJ homolog subfamily 87.0 20 0.00068 34.2 16.1 92 147-250 272-363 (450)
73 1a17_A Serine/threonine protei 86.7 8.8 0.0003 30.7 11.6 88 147-250 28-115 (166)
74 3uq3_A Heat shock protein STI1 86.1 16 0.00054 31.5 17.6 102 147-249 53-172 (258)
75 4eqf_A PEX5-related protein; a 85.9 12 0.00039 34.9 13.4 33 217-249 214-246 (365)
76 2kck_A TPR repeat; tetratricop 85.6 3.8 0.00013 30.3 8.2 62 178-248 11-72 (112)
77 3uq3_A Heat shock protein STI1 84.6 19 0.00063 31.0 14.1 85 147-247 154-238 (258)
78 3vtx_A MAMA; tetratricopeptide 84.5 4.6 0.00016 33.6 9.0 65 175-248 109-173 (184)
79 2fo7_A Synthetic consensus TPR 84.4 11 0.00038 28.3 14.8 65 175-248 71-135 (136)
80 1elw_A TPR1-domain of HOP; HOP 84.4 8 0.00027 28.7 9.6 65 176-249 7-71 (118)
81 1qqe_A Vesicular transport pro 84.3 24 0.00083 32.1 15.0 101 147-250 133-233 (292)
82 1xnf_A Lipoprotein NLPI; TPR, 84.3 14 0.00046 32.4 12.5 92 146-249 19-110 (275)
83 2lni_A Stress-induced-phosphop 84.1 7.3 0.00025 29.8 9.5 65 176-249 19-83 (133)
84 3n71_A Histone lysine methyltr 84.0 12 0.0004 38.1 13.2 95 147-245 324-422 (490)
85 2xpi_A Anaphase-promoting comp 83.7 24 0.00082 35.1 15.5 75 174-250 476-550 (597)
86 2vyi_A SGTA protein; chaperone 83.7 12 0.00041 28.1 10.6 68 173-249 12-79 (131)
87 3q49_B STIP1 homology and U bo 83.5 6.8 0.00023 30.6 9.2 65 176-249 12-76 (137)
88 2vq2_A PILW, putative fimbrial 83.5 19 0.00064 30.2 18.4 89 147-249 57-146 (225)
89 4gcn_A Protein STI-1; structur 83.5 2.7 9.3E-05 33.7 6.7 63 178-250 13-76 (127)
90 3cv0_A Peroxisome targeting si 83.4 13 0.00046 33.3 12.3 89 145-249 151-239 (327)
91 2q7f_A YRRB protein; TPR, prot 83.4 20 0.0007 30.5 16.8 87 147-249 106-192 (243)
92 4b4t_Q 26S proteasome regulato 83.3 23 0.00077 33.7 14.5 97 147-247 110-206 (434)
93 2e2e_A Formate-dependent nitri 83.0 8.1 0.00028 32.0 9.9 88 147-250 59-149 (177)
94 2ho1_A Type 4 fimbrial biogene 83.0 22 0.00076 30.7 16.5 89 147-249 120-208 (252)
95 2q7f_A YRRB protein; TPR, prot 82.9 13 0.00045 31.8 11.6 87 147-249 72-158 (243)
96 2xcb_A PCRH, regulatory protei 82.7 8.7 0.0003 30.8 9.7 64 178-250 23-86 (142)
97 3qww_A SET and MYND domain-con 82.6 6.9 0.00024 39.2 10.7 95 147-245 313-411 (433)
98 3sz7_A HSC70 cochaperone (SGT) 82.5 6.9 0.00024 32.2 9.2 67 174-249 12-78 (164)
99 3as5_A MAMA; tetratricopeptide 82.3 18 0.00061 29.1 15.0 88 147-250 91-178 (186)
100 1ihg_A Cyclophilin 40; ppiase 82.1 24 0.00082 34.0 14.2 70 171-250 271-341 (370)
101 3u4t_A TPR repeat-containing p 81.9 16 0.00056 31.9 12.1 140 147-307 18-165 (272)
102 2vgx_A Chaperone SYCD; alterna 81.8 9.5 0.00032 31.3 9.7 67 175-250 23-89 (148)
103 3upv_A Heat shock protein STI1 81.7 6 0.00021 30.8 8.1 64 177-250 8-72 (126)
104 2xpi_A Anaphase-promoting comp 81.6 6 0.00021 39.6 10.0 69 173-250 516-584 (597)
105 1hxi_A PEX5, peroxisome target 81.3 6.9 0.00024 30.9 8.4 62 180-250 24-85 (121)
106 4eqf_A PEX5-related protein; a 81.1 9.4 0.00032 35.5 10.6 91 145-249 190-280 (365)
107 4gcn_A Protein STI-1; structur 81.1 19 0.00063 28.5 12.4 91 147-248 23-115 (127)
108 3mv2_B Coatomer subunit epsilo 81.0 4.5 0.00015 38.8 8.2 115 147-275 115-231 (310)
109 4i17_A Hypothetical protein; T 80.9 21 0.00071 30.7 12.2 89 147-250 22-110 (228)
110 3gyz_A Chaperone protein IPGC; 80.9 6.7 0.00023 32.8 8.5 65 177-250 40-104 (151)
111 2dba_A Smooth muscle cell asso 80.5 13 0.00045 29.0 9.9 70 174-249 29-98 (148)
112 1na0_A Designed protein CTPR3; 80.4 12 0.00041 27.9 9.3 66 175-249 11-76 (125)
113 1fch_A Peroxisomal targeting s 80.1 13 0.00043 34.4 11.0 63 177-248 221-283 (368)
114 2vq2_A PILW, putative fimbrial 79.7 26 0.00088 29.3 15.8 87 147-247 92-178 (225)
115 1elr_A TPR2A-domain of HOP; HO 79.4 9.6 0.00033 28.8 8.5 65 176-249 7-71 (131)
116 3vtx_A MAMA; tetratricopeptide 79.4 25 0.00085 28.9 15.9 66 176-250 76-141 (184)
117 3qwp_A SET and MYND domain-con 79.4 19 0.00066 35.7 12.7 75 167-245 323-400 (429)
118 1p5q_A FKBP52, FK506-binding p 79.1 14 0.00049 34.8 11.2 68 173-250 196-264 (336)
119 1fch_A Peroxisomal targeting s 78.7 22 0.00077 32.6 12.3 58 185-249 193-250 (368)
120 3urz_A Uncharacterized protein 78.6 10 0.00035 32.7 9.3 67 175-251 56-123 (208)
121 3cv0_A Peroxisome targeting si 77.5 19 0.00066 32.2 11.2 66 174-248 207-272 (327)
122 2c2l_A CHIP, carboxy terminus 77.4 9.5 0.00033 35.0 9.1 87 147-249 19-105 (281)
123 1a17_A Serine/threonine protei 77.2 16 0.00056 29.1 9.7 67 174-249 14-80 (166)
124 4abn_A Tetratricopeptide repea 76.6 62 0.0021 31.9 18.7 96 146-250 193-292 (474)
125 1xnf_A Lipoprotein NLPI; TPR, 76.3 14 0.00049 32.3 9.7 88 147-250 58-145 (275)
126 4ga2_A E3 SUMO-protein ligase 76.2 3.8 0.00013 33.7 5.5 37 214-250 29-65 (150)
127 1kt0_A FKBP51, 51 kDa FK506-bi 75.8 20 0.00068 35.5 11.6 94 147-250 283-385 (457)
128 1hh8_A P67PHOX, NCF-2, neutrop 75.8 7.6 0.00026 33.0 7.5 68 174-250 38-105 (213)
129 2pl2_A Hypothetical conserved 75.7 31 0.0011 29.8 11.7 88 146-250 98-185 (217)
130 2v5f_A Prolyl 4-hydroxylase su 75.3 13 0.00044 28.6 8.1 74 179-255 11-87 (104)
131 1hxi_A PEX5, peroxisome target 75.0 13 0.00044 29.3 8.2 62 177-248 55-117 (121)
132 3u4t_A TPR repeat-containing p 75.0 11 0.00039 33.0 8.7 72 177-251 180-256 (272)
133 2v5f_A Prolyl 4-hydroxylase su 74.6 2.5 8.4E-05 32.9 3.6 31 217-247 6-36 (104)
134 3fp2_A TPR repeat-containing p 74.3 18 0.0006 35.4 10.7 61 177-247 247-307 (537)
135 1w3b_A UDP-N-acetylglucosamine 73.8 27 0.00092 32.7 11.5 30 218-247 69-98 (388)
136 2gw1_A Mitochondrial precursor 73.4 66 0.0023 30.8 15.4 94 147-250 387-483 (514)
137 1wao_1 Serine/threonine protei 73.1 29 0.00099 34.6 12.1 88 146-250 20-108 (477)
138 2yhc_A BAMD, UPF0169 lipoprote 73.0 45 0.0016 28.8 16.8 64 179-249 153-217 (225)
139 3ma5_A Tetratricopeptide repea 72.4 7.7 0.00026 29.3 6.0 35 216-250 7-41 (100)
140 4gyw_A UDP-N-acetylglucosamine 71.4 1.1E+02 0.0037 32.5 17.2 87 147-250 58-145 (723)
141 2fbn_A 70 kDa peptidylprolyl i 71.2 37 0.0013 28.5 10.9 74 174-249 39-121 (198)
142 3qky_A Outer membrane assembly 70.9 54 0.0018 28.7 19.1 68 177-250 152-229 (261)
143 1na3_A Designed protein CTPR2; 70.7 9 0.00031 27.3 5.8 35 215-249 8-42 (91)
144 1hz4_A MALT regulatory protein 70.4 68 0.0023 29.7 14.8 97 147-248 108-206 (373)
145 4b4t_T 26S proteasome regulato 70.4 35 0.0012 31.9 11.1 185 180-383 11-226 (274)
146 3mkr_A Coatomer subunit epsilo 69.9 37 0.0013 31.1 11.3 85 174-272 167-251 (291)
147 3rkv_A Putative peptidylprolyl 69.8 17 0.00059 29.5 8.1 72 176-250 14-97 (162)
148 2y4t_A DNAJ homolog subfamily 68.0 82 0.0028 29.7 18.2 90 147-250 75-177 (450)
149 3c18_A Nucleotidyltransferase- 67.8 24 0.00082 33.4 9.2 132 219-386 133-271 (290)
150 2pl2_A Hypothetical conserved 67.8 29 0.00099 30.0 9.6 66 177-251 9-74 (217)
151 3k9i_A BH0479 protein; putativ 67.5 10 0.00034 29.3 5.8 36 214-249 25-60 (117)
152 2gw1_A Mitochondrial precursor 66.8 26 0.0009 33.7 10.0 66 173-248 237-302 (514)
153 3ieg_A DNAJ homolog subfamily 66.5 73 0.0025 28.5 15.2 88 147-250 135-222 (359)
154 1p5q_A FKBP52, FK506-binding p 65.2 41 0.0014 31.5 10.7 76 173-250 147-230 (336)
155 2e2e_A Formate-dependent nitri 65.1 31 0.0011 28.2 8.9 66 175-249 46-114 (177)
156 3urz_A Uncharacterized protein 63.9 23 0.0008 30.4 8.1 61 181-250 12-88 (208)
157 2vsy_A XCC0866; transferase, g 63.5 45 0.0015 33.5 11.3 63 177-248 61-123 (568)
158 1w3b_A UDP-N-acetylglucosamine 62.6 98 0.0033 28.6 17.0 66 175-249 307-372 (388)
159 4h7y_A Dual specificity protei 61.4 49 0.0017 28.5 9.1 96 146-250 33-128 (161)
160 4abn_A Tetratricopeptide repea 61.3 52 0.0018 32.5 11.1 86 149-251 120-214 (474)
161 4gyw_A UDP-N-acetylglucosamine 60.5 1E+02 0.0035 32.7 13.8 88 146-250 23-111 (723)
162 2if4_A ATFKBP42; FKBP-like, al 60.1 10 0.00035 36.0 5.3 65 175-249 232-297 (338)
163 2vsy_A XCC0866; transferase, g 59.2 40 0.0014 33.9 9.9 67 175-250 25-91 (568)
164 1wi9_A Protein C20ORF116 homol 58.9 36 0.0012 25.3 6.9 49 348-401 20-68 (72)
165 2l6j_A TPR repeat-containing p 58.8 19 0.00065 26.5 5.8 33 217-249 5-37 (111)
166 2kat_A Uncharacterized protein 58.0 19 0.00065 27.3 5.8 33 217-249 20-52 (115)
167 3hym_B Cell division cycle pro 57.8 1E+02 0.0034 27.3 17.2 63 178-249 130-192 (330)
168 1pc2_A Mitochondria fission pr 57.8 9.5 0.00033 32.6 4.1 36 214-249 69-104 (152)
169 2pzi_A Probable serine/threoni 57.5 30 0.001 36.2 8.9 111 175-299 435-552 (681)
170 3bee_A Putative YFRE protein; 56.9 6.7 0.00023 30.1 2.8 33 216-248 43-75 (93)
171 4g1t_A Interferon-induced prot 55.2 32 0.0011 33.0 8.1 101 147-250 66-172 (472)
172 1kt0_A FKBP51, 51 kDa FK506-bi 54.8 59 0.002 32.0 10.2 76 173-250 268-351 (457)
173 3ax2_A Mitochondrial import re 54.7 11 0.00037 28.2 3.5 29 222-250 23-51 (73)
174 2xvc_A ESCRT-III, SSO0910; cel 54.2 32 0.0011 24.4 5.6 34 347-385 23-56 (59)
175 2c2l_A CHIP, carboxy terminus 53.6 40 0.0014 30.6 8.2 65 177-250 8-72 (281)
176 2pzi_A Probable serine/threoni 52.5 41 0.0014 35.2 8.9 86 147-250 482-568 (681)
177 3fp2_A TPR repeat-containing p 51.4 1.7E+02 0.0059 28.0 17.2 64 177-249 314-377 (537)
178 2ifu_A Gamma-SNAP; membrane fu 51.2 1.4E+02 0.0048 27.0 17.7 98 147-250 130-228 (307)
179 3mkr_A Coatomer subunit epsilo 49.4 60 0.002 29.7 8.7 68 174-250 131-200 (291)
180 3ffl_A Anaphase-promoting comp 48.6 24 0.00083 30.6 5.2 39 209-247 56-94 (167)
181 2ond_A Cleavage stimulation fa 47.9 1.2E+02 0.0043 27.3 10.7 66 177-248 207-273 (308)
182 2h6f_A Protein farnesyltransfe 46.7 76 0.0026 30.6 9.3 32 218-249 168-199 (382)
183 2h6f_A Protein farnesyltransfe 45.0 1.1E+02 0.0037 29.5 10.1 66 175-250 168-234 (382)
184 2d58_A Allograft inflammatory 44.6 34 0.0012 26.1 5.2 80 304-390 8-87 (107)
185 1nzn_A CGI-135 protein, fissio 44.5 34 0.0012 28.2 5.3 36 214-249 72-107 (126)
186 2kc7_A BFR218_protein; tetratr 41.9 43 0.0015 24.2 5.3 31 220-250 4-34 (99)
187 1ihg_A Cyclophilin 40; ppiase 41.2 1.1E+02 0.0039 29.0 9.5 76 175-250 225-307 (370)
188 3n71_A Histone lysine methyltr 40.3 1.9E+02 0.0066 29.0 11.4 137 86-244 321-463 (490)
189 2nsz_A Programmed cell death p 40.0 1.5E+02 0.0051 24.0 9.2 87 290-385 16-119 (129)
190 1ouv_A Conserved hypothetical 39.4 1E+02 0.0035 26.9 8.3 27 219-245 41-71 (273)
191 2r5s_A Uncharacterized protein 39.0 87 0.003 25.6 7.4 61 177-244 112-172 (176)
192 1tiz_A Calmodulin-related prot 38.7 68 0.0023 21.4 5.6 53 333-390 4-56 (67)
193 1xn7_A Hypothetical protein YH 36.9 68 0.0023 23.9 5.5 34 348-386 15-48 (78)
194 2qac_A Myosin A tail domain in 36.3 80 0.0027 24.8 6.5 52 332-390 86-137 (146)
195 3qou_A Protein YBBN; thioredox 35.8 2.4E+02 0.0082 25.2 11.4 33 217-249 220-252 (287)
196 2if4_A ATFKBP42; FKBP-like, al 35.0 1.1E+02 0.0038 28.5 8.2 76 173-250 179-264 (338)
197 3i4p_A Transcriptional regulat 34.8 54 0.0019 27.5 5.3 37 347-388 15-51 (162)
198 2lhi_A Calmodulin, serine/thre 34.6 72 0.0025 26.9 6.2 54 333-392 87-140 (176)
199 1om2_A Protein (mitochondrial 34.1 44 0.0015 26.2 4.2 29 222-250 26-54 (95)
200 1qbj_A Protein (double-strande 33.8 1.3E+02 0.0046 22.4 6.8 51 348-403 26-76 (81)
201 3o48_A Mitochondria fission 1 33.2 56 0.0019 27.2 4.9 37 214-250 76-112 (134)
202 1qgp_A Protein (double strande 32.7 91 0.0031 22.9 5.7 37 348-389 30-66 (77)
203 1wao_1 Serine/threonine protei 32.5 82 0.0028 31.2 7.1 59 182-250 15-74 (477)
204 2ion_A PDCD4, programmed cell 32.4 2.2E+02 0.0076 23.8 9.2 86 290-384 18-120 (152)
205 2k02_A Ferrous iron transport 31.9 76 0.0026 24.3 5.1 36 348-388 15-50 (87)
206 1ouv_A Conserved hypothetical 31.4 1.6E+02 0.0053 25.6 8.2 59 178-247 151-217 (273)
207 2r5s_A Uncharacterized protein 30.8 72 0.0025 26.1 5.4 33 217-249 109-141 (176)
208 2b1u_A Calmodulin-like protein 30.3 59 0.002 22.1 4.1 55 332-391 8-62 (71)
209 4g1t_A Interferon-induced prot 30.2 1.7E+02 0.0057 27.8 8.7 71 172-252 212-283 (472)
210 2ktg_A Calmodulin, putative; e 29.9 1.1E+02 0.0038 21.6 5.8 54 332-390 16-69 (85)
211 3t5v_A Nuclear mRNA export pro 29.1 61 0.0021 30.9 5.1 76 294-384 176-252 (316)
212 2cfx_A HTH-type transcriptiona 28.6 81 0.0028 25.7 5.3 35 348-387 18-52 (144)
213 2joj_A Centrin protein; N-term 28.3 82 0.0028 21.8 4.7 54 332-390 9-62 (77)
214 2heo_A Z-DNA binding protein 1 27.8 77 0.0026 22.5 4.4 34 348-386 24-57 (67)
215 2opo_A Polcalcin CHE A 3; calc 27.7 1.2E+02 0.0041 21.5 5.7 53 332-390 13-65 (86)
216 4f3v_A ESX-1 secretion system 26.6 1.6E+02 0.0054 27.5 7.4 56 182-244 144-199 (282)
217 2bl0_C Myosin regulatory light 26.4 1.2E+02 0.0042 23.4 5.9 53 332-390 81-133 (142)
218 2cg4_A Regulatory protein ASNC 26.3 83 0.0028 25.8 5.0 36 348-388 21-56 (152)
219 2p5v_A Transcriptional regulat 26.0 90 0.0031 26.0 5.2 36 348-388 23-58 (162)
220 1s6j_A CDPK, calcium-dependent 26.0 82 0.0028 22.5 4.4 53 333-390 26-78 (87)
221 2ond_A Cleavage stimulation fa 25.7 3.6E+02 0.012 24.0 12.1 88 148-249 80-167 (308)
222 2v79_A DNA replication protein 25.6 37 0.0012 28.2 2.5 34 348-386 50-83 (135)
223 2lv7_A Calcium-binding protein 25.4 95 0.0032 23.7 4.8 43 333-378 39-81 (100)
224 3qou_A Protein YBBN; thioredox 24.7 92 0.0031 28.1 5.4 62 178-248 122-183 (287)
225 2ia0_A Putative HTH-type trans 24.3 99 0.0034 26.2 5.2 36 348-388 30-65 (171)
226 3mv2_B Coatomer subunit epsilo 24.0 3.6E+02 0.012 25.3 9.5 126 170-307 175-306 (310)
227 2dbb_A Putative HTH-type trans 23.9 87 0.003 25.6 4.7 36 348-388 22-57 (151)
228 1y8m_A FIS1; mitochondria, unk 23.8 1.1E+02 0.0038 25.7 5.2 36 214-249 75-110 (144)
229 2hgc_A YJCQ protein; SR346, st 23.3 60 0.0021 25.7 3.2 35 366-401 28-62 (102)
230 4g26_A Pentatricopeptide repea 22.1 3.6E+02 0.012 26.8 9.7 64 173-244 140-203 (501)
231 3rjv_A Putative SEL1 repeat pr 22.0 79 0.0027 27.0 4.2 31 217-247 19-49 (212)
232 2hr2_A Hypothetical protein; a 21.6 1.7E+02 0.0059 24.7 6.1 57 215-271 10-73 (159)
233 3a4c_A DNA replication factor 21.0 2.5E+02 0.0087 22.2 6.4 49 319-375 11-60 (106)
234 2pn6_A ST1022, 150AA long hypo 20.7 1.4E+02 0.0047 24.2 5.3 35 348-387 16-50 (150)
235 2kn2_A Calmodulin; S MAPK phos 20.2 2.4E+02 0.0082 20.1 6.1 44 332-378 11-54 (92)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-82 Score=647.34 Aligned_cols=387 Identities=18% Similarity=0.254 Sum_probs=346.2
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHhccccccCCCcc--hhhHHhhhh--hhhhHHHHhhhc---CCCCChHHHHHHHHHHh
Q 015089 10 HRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS--LLSLADSLN--VFQDANRLIKQS---DNYSPFADITVPLFRSL 82 (413)
Q Consensus 10 ~~~l~~~l~~v~~a~~~~dg~~la~lls~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~evv~~~l~~~ 82 (413)
|+.+++|+.+|.+ |. ..+|+++|+.|. ...+++.+. .+.+.++.|+.. .+|++|.+++.+|++++
T Consensus 1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~ 72 (455)
T 3t5v_B 1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA 72 (455)
T ss_dssp -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 5678999999998 33 899999998763 344444332 244577777764 57889999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHhccCcccc---HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHH
Q 015089 83 QHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWA---LEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKV 158 (413)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~---lp~L~~~~~~l~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~ 158 (413)
++++++++.++|+.+.++++.++++|.+.+.+|+ +|+++.++..++.+|.++|++... ...+.++||+||++|+++
T Consensus 73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~ 152 (455)
T 3t5v_B 73 RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRL 152 (455)
T ss_dssp HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999988778998 888888999999999999998843 334578999999999999
Q ss_pred HHhhhCCC------C---chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccchhhhhhhhHHHhhh
Q 015089 159 FGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVF 228 (413)
Q Consensus 159 f~~~~~d~------~---Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~-~p~~~~~p~~~~v~y~YY~Gr~~~~ 228 (413)
|+.|++|. + ||+|++|++|+|||+|||+|++++|++++|+++++. +|+++.||++|+|||+||+||++++
T Consensus 153 F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~ 232 (455)
T 3t5v_B 153 FNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL 232 (455)
T ss_dssp HHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH
Confidence 99999983 3 999999999999999999999999999999999875 5789999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHh-cCcc-----chHHHHHHHHHHHHHHhhcCCCCChhhhcc---ccccc-hHHHHHHHHhCCHH
Q 015089 229 NENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEK---YNLVE-YSNIVQALRRGDLR 298 (413)
Q Consensus 229 ~~~~~~A~~~L~~A~~~-c~~~-----~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~---~~l~~-y~~L~~air~Gdl~ 298 (413)
+++|.+|+++|++||++ ||.+ +.+|+++||+||||++|++|++|++.++++ +.+.+ |.+|++|||+||+.
T Consensus 233 ~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~ 312 (455)
T 3t5v_B 233 NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQ 312 (455)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999 9987 479999999999999999999999999998 35776 99999999999999
Q ss_pred HHHHHHHHcHHHHHHhcH-HHHHHHhHHHHHHHHHHHH---HHHhhcCCCCCCccccHHHHHHHHhhccCC---------
Q 015089 299 LLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKI---YIIQKQKDPSKAHQMKLDVIVKALKWLEMD--------- 365 (413)
Q Consensus 299 ~f~~~l~~~~~~f~k~gl-yllle~lr~~v~rnL~kkv---~~~~~~~~~~~~~~i~l~~~~~al~~~~~~--------- 365 (413)
+|+++|++|+++|+++|+ |++++|+|.+|||||+||| |.+. .+++|||+++|+.||++++.+
T Consensus 313 ~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~-----~~~srI~l~~i~~aL~~~~~~~~~~~~~~~ 387 (455)
T 3t5v_B 313 GVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE-----WGQNKLPYSLIERVLQLSIGPTFEDPGAQE 387 (455)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TCCCEEEHHHHHHHHHHHHCCCTTSTTCCC
T ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCeeeHHHHHHHHhhccCcccccccccc
Confidence 999999999999999999 9999999999999999999 5443 356999999999999986432
Q ss_pred -------CCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC----CCCCCCCCC
Q 015089 366 -------MDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ----DPFPKLNGK 409 (413)
Q Consensus 366 -------~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~----~pFP~~~~~ 409 (413)
+|+||||||+|+||++|+|||||+|+++++|+||+ +|||+++++
T Consensus 388 ~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~ 442 (455)
T 3t5v_B 388 ITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNER 442 (455)
T ss_dssp CCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHH
Confidence 68999999999999999999999999999999999 999998753
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=5.3e-59 Score=431.75 Aligned_cols=196 Identities=43% Similarity=0.844 Sum_probs=187.5
Q ss_pred CCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChhhhccccccchHH
Q 015089 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSN 287 (413)
Q Consensus 208 ~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~l~~y~~ 287 (413)
+.||++|+|||+||+||++|+++||.+|+++|++||++||+++.+||++||+||||++|++|++|+++++++|++.+|.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~ 85 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAE 85 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC-C
Q 015089 288 IVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD-M 366 (413)
Q Consensus 288 L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~-~ 366 (413)
|++|||+||+.+|++++++|+++|+++|+|++++|+|.+|+||++|+||.+. +.+|||+++|+.++++++.+ +
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~------~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLL------KTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHH------CCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhc------CCCcccHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999986 46999999999999998754 7
Q ss_pred CHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCCCCCCCCC
Q 015089 367 DVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGK 409 (413)
Q Consensus 367 d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~pFP~~~~~ 409 (413)
|+||||||+|+||++|+|||||+|+++++|+||++|||+++++
T Consensus 160 ~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l~~~ 202 (203)
T 3t5x_A 160 DIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTV 202 (203)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCGGGT
T ss_pred CHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999875
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-45 Score=377.59 Aligned_cols=308 Identities=15% Similarity=0.200 Sum_probs=211.7
Q ss_pred ChHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH-HHHHHHhccCccccHHHHHHHHHHHHHHHH-HHHHHHhhCCCChhH
Q 015089 70 PFADITVPLFRSLQHYRTGNLVDAYLAFEKSAN-AFIQEFRNWESAWALEALYVIAYEIRVLAE-RADRELASNGKSPEK 147 (413)
Q Consensus 70 ~~~evv~~~l~~~~~~~~~~~~~a~~~~~~~~~-~l~~~~~~~~~~W~lp~L~~~~~~l~~la~-~~D~~~~~~~~~~~~ 147 (413)
|-.|++...+.+++.++++.+.++.++...++. ..++.+ +..+++.|...++++...+. +...-. ..-.....
T Consensus 132 pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~----nrrtlD~l~ak~~fY~s~~~e~~~~~~-~~~~~~~~ 206 (523)
T 4b4t_S 132 AEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYY----NLRSLNLINAKLWFYIYLSHETLARSS-EEINSDNQ 206 (523)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHHhcccc-cccccccc
Confidence 567888888999999999999999998877762 233322 23588888887777654432 222111 00112334
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhh
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~ 227 (413)
...+...|+..++++...++ ..+.-.+.|++++.|...|.++++..++. .+.+|. ...+.+|+++|+||.||+++
T Consensus 207 ~~~ir~~Ll~~~rta~lr~D-~~~qa~l~nllLRnYL~~~~y~qA~~lvs---k~~fP~-~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 207 NIILRSTMMKFLKIASLKHD-NETKAMLINLILRDFLNNGEVDSASDFIS---KLEYPH-TDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp HHHHHTHHHHHHHHCCSCSS-SCHHHHHHHHHHHHHHHSSCSTTHHHHHH---HHCSCT-TTSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHccCcHHHHHHHHh---cCcCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 55677888999998776432 23557799999999999999999999984 334663 34688999999999999999
Q ss_pred hhcChHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHHhhcCCCCChhhhcccc----ccchHHHHHHHHhCCHHHHH
Q 015089 228 FNENFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDWLLEKYN----LVEYSNIVQALRRGDLRLLR 301 (413)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~--~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~----l~~y~~L~~air~Gdl~~f~ 301 (413)
++++|.+|+++|++||++||++. .++++.++||+|||+|++|.+|++.++.+|. +.+|.+|++|||.||+..|+
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~ 361 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFT 361 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999764 4899999999999999999999999999987 46799999999999999999
Q ss_pred HHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 015089 302 HALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHK 381 (413)
Q Consensus 302 ~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~ 381 (413)
.++++|+.+|+++|+|.+++|+|..|+|+++|++...| ++||+++|...+++. +.+|+|||+|+||.+
T Consensus 362 ~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Y--------srIsL~dIa~kL~L~----s~eeaE~iVAkmI~d 429 (523)
T 4b4t_S 362 STITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTY--------KKISLRDICLKLNLD----SEQTVEYMVSRAIRD 429 (523)
T ss_dssp HHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCS--------SEECHHHHHHHHHHH----HSSCHHHHHHHHHHH
T ss_pred HHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHH--------hcccHHHHHHHhCCC----CHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998887 899999999999974 356899999999999
Q ss_pred CceeEEeecCCeEEEEecC
Q 015089 382 NLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 382 G~IkGyIs~~~~~vVlSk~ 400 (413)
|.|+|+|+|++++|+ ||.
T Consensus 430 G~I~A~Idh~~g~v~-ske 447 (523)
T 4b4t_S 430 GVIEAKINHEDGFIE-TTE 447 (523)
T ss_dssp TSSCCEECTTTCCEE-CCS
T ss_pred CCceEEEecCCCEEE-eCc
Confidence 999999999999876 553
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.84 E-value=7.4e-19 Score=177.27 Aligned_cols=237 Identities=14% Similarity=0.172 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~--~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
.+.++...+.++.+.|..-+. +..++.+..+..++|+.++|+..++..+..-... .++ -|..-+..++.|.|+
T Consensus 114 ~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~p~i~a~i~~~~Gi 188 (394)
T 3txn_A 114 LYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CPPKVQGALDLQSGI 188 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CCHHHHHHHHHHhhH
Confidence 556677777888787776322 5788899999999999999999999988544321 232 133445689999999
Q ss_pred Hhh-hhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChhh-h-----ccc---cccchHHHHHHHHh
Q 015089 225 LEV-FNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWL-L-----EKY---NLVEYSNIVQALRR 294 (413)
Q Consensus 225 ~~~-~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l-----~~~---~l~~y~~L~~air~ 294 (413)
+++ .+++|.+|..+|.+||+.++.....++..+++|++.|+|+++..|...- + .+| .+..+..|+.|++.
T Consensus 189 ~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~ 268 (394)
T 3txn_A 189 LHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHK 268 (394)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred HHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHh
Confidence 999 9999999999999999999887888889999999999999987555431 1 112 23457899999999
Q ss_pred CCHHHHHHHHHHcHHHHHHhcHHH-HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHH
Q 015089 295 GDLRLLRHALEEHEDQFLRSGVYL-VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVEC 373 (413)
Q Consensus 295 Gdl~~f~~~l~~~~~~f~k~glyl-lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEc 373 (413)
||+..|.++++.++..|..+...- -++.++..+...-++++..-| ++|+++.++.+++ ++.+|+|.
T Consensus 269 ~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pY--------srIsl~~iA~~l~-----ls~~evE~ 335 (394)
T 3txn_A 269 RSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPY--------SRVQVAHVAESIQ-----LPMPQVEK 335 (394)
T ss_dssp TCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTC--------SEEEHHHHHHHHT-----CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhh--------ceeeHHHHHHHHC-----cCHHHHHH
Confidence 999999999999976555544321 233333333333333333234 8999999999998 68999999
Q ss_pred HHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 374 IVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 374 ila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
.++.||.+|.|.|.|++.+++|++.+.+
T Consensus 336 ~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 336 KLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 9999999999999999999999987754
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.4e-16 Score=155.44 Aligned_cols=217 Identities=18% Similarity=0.206 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc-
Q 015089 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP- 248 (413)
Q Consensus 170 ~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~- 248 (413)
.+.+++-..+.+.|++.|....|+.+++.+++. +...+..+..-...|++..|.++..+++|.+++.+...++..++.
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~ 202 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS 202 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 567888899999999999999999999877643 111111122222355556788889999999999999999987763
Q ss_pred -cchHHHHHHHHHHHHHHhhcC-CCCChh-hhcccc---------ccchHHHHHHHHhCCHHHHHHHHHHcHH--HHHHh
Q 015089 249 -QSEANIRMILKYLIPVKLSIG-ILPKDW-LLEKYN---------LVEYSNIVQALRRGDLRLLRHALEEHED--QFLRS 314 (413)
Q Consensus 249 -~~~~nk~~IL~yLIpv~Ll~G-~~P~~~-ll~~~~---------l~~y~~L~~air~Gdl~~f~~~l~~~~~--~f~k~ 314 (413)
+.....+..+.|.+.+..++| .+|.+. ++..+. ...+.+|.+++..||+..|++.++.|.. .++..
T Consensus 203 ~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~ 282 (393)
T 4b4t_O 203 TSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ 282 (393)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh
Confidence 334667777888888887776 576664 555432 1236789999999999999999887755 45666
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeE
Q 015089 315 GVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKV 394 (413)
Q Consensus 315 glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~ 394 (413)
+.-.+++++|.+++..++.. .....||++.+..+++ ++.+|||.+++++|..|+|+|+|++.+++
T Consensus 283 ~~~~l~~kirll~l~~l~~~----------~~~~~i~f~~ia~~l~-----i~~~evE~lli~aI~~glI~GkIDQv~~~ 347 (393)
T 4b4t_O 283 HESFLRQKICLMTLIETVFV----------KNIRMLSFEDISKATH-----LPKDNVEHLVMRAISLGLLKGSIDQVNEL 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHCS----------SSCCCEEHHHHHHHHT-----CCHHHHHHHHHHHHHHSCSSSCEETTTTE
T ss_pred hHHHHHHHHHHHHHHHHhcc----------CCCCcCcHHHHHHHhC-----cCHHHHHHHHHHHHHcCCEEEEEcCCCCE
Confidence 66677889998888776532 1236899999999998 68999999999999999999999999999
Q ss_pred EEEecCCC
Q 015089 395 VVLSKQDP 402 (413)
Q Consensus 395 vVlSk~~p 402 (413)
|.++...|
T Consensus 348 v~v~~~~p 355 (393)
T 4b4t_O 348 VTISWVQP 355 (393)
T ss_dssp ECC-----
T ss_pred EEEEeccC
Confidence 99887543
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.1e-14 Score=146.20 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+...+|+++|..+-.-+.+..+ +.....+.....++|+..+++..++.+++.++...+.. .-+...+..|+.|.|++
T Consensus 151 g~~~eA~~iL~~l~~Et~~~~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~ 227 (445)
T 4b4t_P 151 GKIDEAADILCELQVETYGSME-MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKI 227 (445)
T ss_dssp TCHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHH
Confidence 4567888888888766554322 44567788899999999999999999998776432110 11345678999999999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCChh-hhcc-c------cccchHHHHHHHHhCC
Q 015089 226 EVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPKDW-LLEK-Y------NLVEYSNIVQALRRGD 296 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~~~-ll~~-~------~l~~y~~L~~air~Gd 296 (413)
++.+++|.+|..++.++|...+.... ..+..+|++.|.+.++.+.-|.+. ++.+ + .+..|..|.+++..++
T Consensus 228 ~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~ 307 (445)
T 4b4t_P 228 SLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE 307 (445)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence 99999999999999999998765544 455668888888888877777655 3333 1 1456999999999999
Q ss_pred HHHHHHHHHHcHHHHHHhcHH-------HHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHH
Q 015089 297 LRLLRHALEEHEDQFLRSGVY-------LVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVD 369 (413)
Q Consensus 297 l~~f~~~l~~~~~~f~k~gly-------llle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~ 369 (413)
+..|..+++.++..+..+.+. ..+..|+..|.-.-++++...| ++|+++.+...|+ ++.+
T Consensus 308 L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Y--------s~I~l~~la~lL~-----l~~~ 374 (445)
T 4b4t_P 308 LMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYY--------SRITLLRLNELLD-----LTES 374 (445)
T ss_dssp SSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHE--------EEEEHHHHHHHHT-----SCHH
T ss_pred HhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHh--------ceeeHHHHHHHhC-----cCHH
Confidence 999999999987655444332 2234444444444455566667 9999999999997 6899
Q ss_pred HHHHHHHHHHHcCceeEEeecCCeEEEEecC
Q 015089 370 EVECIVAILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 370 evEcila~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
|+|..++.||.+|.|.|+|++..|+|++.+.
T Consensus 375 evE~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 375 QTETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 9999999999999999999999999999764
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.2e-12 Score=124.09 Aligned_cols=235 Identities=14% Similarity=0.187 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~--~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.++...+....+ +.....+.+.+.++|..++++..++.+++..... .++. |...+.+++.+.|+
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDD-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC----PTQTVAELDLMSGI 224 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSC-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC----chHHHHHHHHHHHH
Confidence 456777788888777665433 4466788999999999999999999998644321 1322 44556789999999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHHhhcCCCCChh-hhc-----cc-c---ccchHHHHH
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQS----EANIRMILKYLIPVKLSIGILPKDW-LLE-----KY-N---LVEYSNIVQ 290 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~----~~nk~~IL~yLIpv~Ll~G~~P~~~-ll~-----~~-~---l~~y~~L~~ 290 (413)
++..+++|.+|..++..||+..+... .......++|.+.+.++.+...... .+. ++ . ...+..+..
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAE 304 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 99999999999999999998765332 2345557777777777654322111 111 11 1 234789999
Q ss_pred HHHhCCHHHHHHHHHHcHHHHHHhcH-HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHH
Q 015089 291 ALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVD 369 (413)
Q Consensus 291 air~Gdl~~f~~~l~~~~~~f~k~gl-yllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~ 369 (413)
++..+++..|.++++.+...+..+.. ...++.+...+....++++...| ++|+++.+..+|+ ++.+
T Consensus 305 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y--------~~i~l~~la~~l~-----~~~~ 371 (434)
T 4b4t_Q 305 AYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPF--------ECVEISHISKIIG-----LDTQ 371 (434)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSC--------SCEEHHHHHHHHT-----CCHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcCHHHHHHHhC-----cCHH
Confidence 99999999999999999887666543 33444444444444444443333 8999999999998 6899
Q ss_pred HHHHHHHHHHHcCceeEEeecCCeEEEEec
Q 015089 370 EVECIVAILIHKNLVKGYFAHKSKVVVLSK 399 (413)
Q Consensus 370 evEcila~LI~~G~IkGyIs~~~~~vVlSk 399 (413)
++|..+++||.+|.|.|.|++..++|++..
T Consensus 372 ~~E~~l~~lI~~~~i~a~id~~~g~v~~~~ 401 (434)
T 4b4t_Q 372 QVEGKLSQMILDKIFYGVLDQGNGWLYVYE 401 (434)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEECC-
T ss_pred HHHHHHHHHHhCCCcceecccccCeEeeCC
Confidence 999999999999999999999999998854
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.9e-12 Score=128.52 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhh
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~ 227 (413)
++.|...+.++...|.+.+. + +.+.-.++++|+..+++..+...++.+++.... ...| ..+..++.|.|++++
T Consensus 147 ~~~A~~~~~~~~~~~~~~~~-k---id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~~d~-~~~~~lk~~~gl~~l 219 (429)
T 4b4t_R 147 KDNAEKTLGKSLSKAISTGA-K---IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--GGDW-ERRNRYKTYYGIHCL 219 (429)
T ss_dssp CTTHHHHHHHHHHHHTCCCS-H---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--CCCT-HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCChHH-H---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--CCCH-HHHHHHHHHHHHHHH
Confidence 34566777787778877633 2 466777889999999999999998776543110 1112 345689999999999
Q ss_pred hhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCC--------Chhhhcc----ccccchHHHHHHHHhC
Q 015089 228 FNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP--------KDWLLEK----YNLVEYSNIVQALRRG 295 (413)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P--------~~~ll~~----~~l~~y~~L~~air~G 295 (413)
..++|.+|..+|..+|..+..........+++|.+.+.++...-. +.....- +.+..+..++.+.-.+
T Consensus 220 ~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~ 299 (429)
T 4b4t_R 220 AVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYAS 299 (429)
T ss_dssp GTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhc
Confidence 999999999999999999887777778888999999998864211 1111111 1123456778888999
Q ss_pred CHHHHHHHH-HHcH-----HHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHH
Q 015089 296 DLRLLRHAL-EEHE-----DQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVD 369 (413)
Q Consensus 296 dl~~f~~~l-~~~~-----~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~ 369 (413)
++..|-+.+ +.++ +.|++.++-.+.+++|..+++.+++. | ++|+++.++.+|+ ++.+
T Consensus 300 ~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~----Y--------s~I~l~~mA~~l~-----~s~~ 362 (429)
T 4b4t_R 300 DYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLES----Y--------KTLSLKSMASAFG-----VSVA 362 (429)
T ss_dssp CHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHT----C--------SEEEHHHHHHHHT-----SCHH
T ss_pred cHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHH----h--------ceeeHHHHHHHhC-----cCHH
Confidence 999987655 4332 46777777778889999888887774 4 9999999999998 6899
Q ss_pred HHHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 370 EVECIVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 370 evEcila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
++|..+++||.+|.|.|.|+..+|+|+..+.+
T Consensus 363 ~~E~~L~~lI~~g~l~akID~~~giv~~~~~d 394 (429)
T 4b4t_R 363 FLDNDLGKFIPNKQLNCVIDRVNGIVETNRPD 394 (429)
T ss_dssp HHHHHHHHHHHHTSSCEEEETTTTEEEECC--
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCEEEECCCC
Confidence 99999999999999999999999999987654
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.68 E-value=9.2e-08 Score=89.47 Aligned_cols=180 Identities=9% Similarity=0.037 Sum_probs=132.8
Q ss_pred HHHHHhcCChhhHHHHHHHhhc-----cCCCCCCCCCccc--hhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc--
Q 015089 180 FKIYFKLGTVHLCRSVIRSIET-----ARIFDFEEFPKRD--KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-- 250 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~-----~~~p~~~~~p~~~--~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-- 250 (413)
++-+|.-++++.|..+++.++- ..+|+ ..+..+ ..++-|+.|....++.+..+|++....+++..+.+.
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p--~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVP--TSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSC--CSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC
Confidence 5667788999999999987752 22443 123333 568999999999999999999999999998777543
Q ss_pred -hHHHHHHHHHHHHHHhhcCCCCChhhh-ccc---c-------ccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHH
Q 015089 251 -EANIRMILKYLIPVKLSIGILPKDWLL-EKY---N-------LVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYL 318 (413)
Q Consensus 251 -~~nk~~IL~yLIpv~Ll~G~~P~~~ll-~~~---~-------l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyl 318 (413)
.+|+..++.|-+..-|.+|.+|.+... +.- . +.....|.+|+..||+.+|-+..++........=+..
T Consensus 92 ~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~ 171 (229)
T 4b0z_A 92 PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKI 171 (229)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHH
Confidence 358888999988888889998887642 221 1 1234689999999999999999987643221221233
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHH
Q 015089 319 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAI 377 (413)
Q Consensus 319 lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~ 377 (413)
+++++|.-+.+. +...| ++||++.++.-|.+. +++|++..+..
T Consensus 172 l~~~vR~~~l~~----i~kaY--------~~i~l~~~~~~L~f~----s~~e~~~f~~~ 214 (229)
T 4b0z_A 172 VMSMVRNEIATC----AEKVY--------SEIPLSNATSLLYLE----NTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHH----HHHHC--------SEEEHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHc--------CCCCHHHHHHHhCCC----CHHHHHHHHHH
Confidence 567777766555 44456 789999999999874 68899888877
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.10 E-value=9.8e-06 Score=72.07 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=78.5
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcH-HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhc
Q 015089 284 EYSNIVQALRRGDLRLLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWL 362 (413)
Q Consensus 284 ~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~gl-yllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~ 362 (413)
.+.+|.+++-.||+..|++.-+.+. ++ -.+.+|+|.+++-.|.-+ ...||++.|..+++
T Consensus 61 ~~~~LL~iF~~G~~~~y~~~~~~~p------~L~~~~~~KlrlLtL~sLa~~------------~~~lsy~~I~~~l~-- 120 (169)
T 3chm_A 61 VYLDLLRLFAHGTWGDYKCNATRLP------HLSPDQILKLKQLTVLTLAES------------NKVLPYDTLMVELD-- 120 (169)
T ss_dssp HHHHHHHHHHHCCHHHHHHHGGGSC------CCCHHHHHHHHHHHHHHHHHH------------CSEEEHHHHHHHHT--
T ss_pred HHHHHHHHHhcCCHHHHHHhHHhCc------chHHHHHHHHHHHHHHHHHHh------------CCCcCHHHHHHHhC--
Confidence 4789999999999999998543321 22 335689999998888764 27899999999998
Q ss_pred cCCCC-HHHHHHHHH-HHHHcCceeEEeecCCeEEEEecC
Q 015089 363 EMDMD-VDEVECIVA-ILIHKNLVKGYFAHKSKVVVLSKQ 400 (413)
Q Consensus 363 ~~~~d-~~evEcila-~LI~~G~IkGyIs~~~~~vVlSk~ 400 (413)
++ .+|||.++. .+|+.|+|+|+|+..++++.++..
T Consensus 121 ---i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 121 ---VSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp ---CCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 45 999999999 999999999999999999998864
No 11
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.95 E-value=1.9e-05 Score=61.98 Aligned_cols=51 Identities=12% Similarity=0.296 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCCC
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPF 403 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~pF 403 (413)
++|+++.+...|. ++.+++|.++++||.+|.|.|.|+...++|++.+.+|.
T Consensus 29 ~~Isl~~La~ll~-----ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 29 NNITFEELGALLE-----IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp SEEEHHHHHHHTT-----SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred CeeeHHHHHHHHC-----cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 9999999999998 68999999999999999999999999999999887663
No 12
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.30 E-value=0.7 Score=39.22 Aligned_cols=148 Identities=13% Similarity=0.004 Sum_probs=90.3
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHHHHHhcc-CccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 015089 79 FRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMK 157 (413)
Q Consensus 79 l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~ 157 (413)
.........+++.+|.+.+.+.+...- .. +..+...++.. +|...-. .+..+++...+.+
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~-------l~~~~~~--------~g~~~~A~~~~~~ 91 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQ----KSGDHTAEHRALHQ-------VGMVERM--------AGNWDAARRCFLE 91 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHH-------HHHHHHH--------TTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHH----HcCCcHHHHHHHHH-------HHHHHHH--------cCCHHHHHHHHHH
Confidence 333344567789999888766654332 21 11122211111 2211111 1245566666666
Q ss_pred HHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCccchhhhhhhhHHHhhhhcChHHH
Q 015089 158 VFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAA 235 (413)
Q Consensus 158 ~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A 235 (413)
+...+...++.........+.+-.+|++.|+++.+...+. +++... .. ...........+|.++...+++.+|
T Consensus 92 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-----DQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHCcCHHHH
Confidence 6665543322344556777888899999999999988874 333211 11 1223345578899999999999999
Q ss_pred HHHHHHHHHhcCccc
Q 015089 236 DQKLSYALINCNPQS 250 (413)
Q Consensus 236 ~~~L~~A~~~c~~~~ 250 (413)
.+++.+|+..+....
T Consensus 167 ~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 167 QQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999876544
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.02 E-value=0.47 Score=45.51 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=103.7
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhcc-CccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 015089 74 ITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAG 152 (413)
Q Consensus 74 vv~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a 152 (413)
.+..+++.......+++.+|.+.+.+.+.. +... +........ ..+|...-. .+..+.+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~a~~~-------~~lg~~~~~--------~~~~~~A~ 163 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESK----LIFVKDRIEKAEFF-------FKMSESYYY--------MKQTYFSM 163 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHHHHHHH-------HHHHHHHHH--------TTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHHHHHHHH-------HHHHHHHHH--------cCCHHHHH
Confidence 333445566667788999999887766542 1111 111111111 122221111 12345566
Q ss_pred HHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCccchhhhhhhhHHHhhhhc
Q 015089 153 SFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPKRDKVTYMYYTGRLEVFNE 230 (413)
Q Consensus 153 ~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p~~~~~p~~~~v~y~YY~Gr~~~~~~ 230 (413)
..+.++.......++.........+.+-.+|..+|+++.+...++ +++-.. .+ ........++.+|.++...+
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-----QPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHCC
Confidence 666666666655433345566788888899999999999998874 444321 11 12334567788999999999
Q ss_pred ChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCC
Q 015089 231 NFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 231 ~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~ 271 (413)
+|.+|.+++..|+..+..... .+.-.++..|.-+-.-+|+.
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence 999999999999996654332 33333444444444445553
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.66 E-value=0.63 Score=44.66 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=101.7
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 015089 76 VPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFL 155 (413)
Q Consensus 76 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l 155 (413)
..+++.......+++.+|.+.+.+.+..... . .+.... +..+..+|...-. .+..+.+...+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~-------a~~~~~lg~~y~~--------~~~~~~A~~~~ 164 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPF-V--SDDIEK-------AEFHFKVAEAYYH--------MKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-C--CCHHHH-------HHHHHHHHHHHHH--------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-C--CChHHH-------HHHHHHHHHHHHH--------cCCcHHHHHHH
Confidence 3445556667788999999887766542211 0 011111 1111222221111 12344555556
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccC-CCCCCCCCccchhhhhhhhHHHhhhhcChH
Q 015089 156 MKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVFNENFP 233 (413)
Q Consensus 156 ~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~~-~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~ 233 (413)
.++.......++.........+.+-.+|+++|+++.+...+ ++++... .+ ........++.+|.++...++|.
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-----NDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHCCCHH
Confidence 66655554433223456677788889999999999999877 4554321 11 12245567888999999999999
Q ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCC
Q 015089 234 AADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 234 ~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~ 271 (413)
+|.+++..|+..+.....+..-.++..|.-+-.-.|+.
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 99999999999665433332234444444444445554
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.58 E-value=1.3 Score=35.16 Aligned_cols=141 Identities=16% Similarity=0.039 Sum_probs=84.2
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 015089 84 HYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLA 163 (413)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~ 163 (413)
....+++.+|.+.+.+.+...-. .. +..+....+ ..+|...-. .+..+++...+.++...+.
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~-------~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKE-FG--DKAAERIAY-------SNLGNAYIF--------LGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-HT--CHHHHHHHH-------HHHHHHHHH--------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH-hC--CchHHHHHH-------HHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Confidence 34567899998887777654332 11 111111111 112221111 1234555555555555443
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHH
Q 015089 164 GKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241 (413)
Q Consensus 164 ~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (413)
..++ ..........+-.+|+..++++.+...++ +++.. ... .........+.+|.++...+++.+|.+++..
T Consensus 81 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 81 QLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-----DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-----chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3211 23334556677889999999999998874 33321 111 1234566788999999999999999999999
Q ss_pred HHHhcCc
Q 015089 242 ALINCNP 248 (413)
Q Consensus 242 A~~~c~~ 248 (413)
|+..+.+
T Consensus 155 a~~~~~~ 161 (164)
T 3ro3_A 155 HLEISRE 161 (164)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9987653
No 16
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.18 E-value=2.5 Score=39.09 Aligned_cols=216 Identities=11% Similarity=-0.025 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 015089 71 FADITVPLFRSLQHY-RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLK 149 (413)
Q Consensus 71 ~~evv~~~l~~~~~~-~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le 149 (413)
|++....|-+....+ ..+++.+|.+.+.+.+....+ .. +... .+..+..++..... .+..+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~--~~~~-------~a~~~~~lg~~~~~--------~g~~~ 94 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AG--NEDE-------AGNTYVEAYKCFKS--------GGNSV 94 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-TT--CHHH-------HHHHHHHHHHHHHH--------TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hC--CHHH-------HHHHHHHHHHHHHH--------CCCHH
Confidence 555555555554332 467889998888777653322 11 1100 11112222222111 12344
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHHHhh
Q 015089 150 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (413)
Q Consensus 150 ~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl-~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~ 227 (413)
++...+.++....... ....+.....+.+-.+|.+. |+++.+-..+ ++++-. |... ........+.-+|.+++
T Consensus 95 ~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQ--SVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCC--ChHHHHHHHHHHHHHHH
Confidence 5555555554443322 12344455667778899995 9999998776 444421 1100 11222455677899999
Q ss_pred hhcChHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHHHhhcCCCCChh-hhccc-----cc------cchHHHHHHHH
Q 015089 228 FNENFPAADQKLSYALINCNPQSEA--NIRMILKYLIPVKLSIGILPKDW-LLEKY-----NL------VEYSNIVQALR 293 (413)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~--nk~~IL~yLIpv~Ll~G~~P~~~-ll~~~-----~l------~~y~~L~~air 293 (413)
-.++|.+|.+++..|...+|..... .....+.-+.-+.+-+|.+..-. .++++ .. ..+..+..++.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999998865431 12223333334444456543321 12221 00 12456788888
Q ss_pred hCCHHHHHHHHHHcHH
Q 015089 294 RGDLRLLRHALEEHED 309 (413)
Q Consensus 294 ~Gdl~~f~~~l~~~~~ 309 (413)
.||...|+++++.++.
T Consensus 250 ~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDN 265 (292)
T ss_dssp TTCTTTHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcc
Confidence 9999999999998743
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.58 E-value=2.9 Score=37.60 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=86.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhC
Q 015089 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (413)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (413)
...+++.+|.+.+.+.+....+.+.. +..+....+.. +|...- ..+..+++...+.++...+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~-------la~~~~--------~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNN-------LALLCQ--------NQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH-------HHHHHH--------TTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHH-------HHHHHH--------HcCCHHHHHHHHHHHHHHHHH
Confidence 45678999998888877655444322 11111111111 221110 113455666666666555432
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hcc---CCCC---------------------------------
Q 015089 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETA---RIFD--------------------------------- 206 (413)
Q Consensus 165 d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i-~~~---~~p~--------------------------------- 206 (413)
. +............+-.+|++.|+++.+...++.. +.. ....
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1112344567777889999999999998887433 210 0000
Q ss_pred -CCC--CCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 207 -FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 207 -~~~--~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
+.. -.........+.+|.++...+++.+|.+++..|++..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000 012345677889999999999999999999999987653
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.52 E-value=4 Score=36.62 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=86.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhC
Q 015089 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (413)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (413)
...+++.+|.+.+.+.+...-+.... +.......... +|.. .. ..+..+++...+.++...+..
T Consensus 80 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~-------l~~~---~~-----~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 80 RDQNKYKDAANLLNDALAIREKTLGK-DHPAVAATLNN-------LAVL---YG-----KRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH-------HHHH---HH-----TTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHH-------HHHH---HH-----HcCcHHHHHHHHHHHHHHHHH
Confidence 45678999988887777654443321 11111221111 2211 10 112445555555555554421
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHH
Q 015089 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241 (413)
Q Consensus 165 d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i-~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (413)
. +..........+.+-.+|++.|+++.+...++.. +.. .... -.........+.+|.++...+++.+|.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG---PDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 0112344566777889999999999999887533 321 0100 01234567788999999999999999999999
Q ss_pred HHHhcCc
Q 015089 242 ALINCNP 248 (413)
Q Consensus 242 A~~~c~~ 248 (413)
|+..++.
T Consensus 221 al~~~~~ 227 (311)
T 3nf1_A 221 ILTRAHE 227 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 19
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.85 E-value=2.9 Score=35.76 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC--------CCccchhhh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE--------FPKRDKVTY 218 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~--------~p~~~~v~y 218 (413)
..+++...+.++....-. . ......+-.+|++.|+++.+...++..-.. .|.-.. --.......
T Consensus 52 ~~~~A~~~~~~al~~~~~----~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 52 NMTEAEKAFTRSINRDKH----L---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp CHHHHHHHHHHHHHHCTT----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHH
T ss_pred CHHHHHHHHHHHHHhCcc----c---hHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHH
Confidence 345555555555443211 1 233456667899999999999888543221 121110 011234567
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHH
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK 259 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~ 259 (413)
.|.+|..+...+++.+|.+++..|+...|..........+.
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence 89999999999999999999999999998765544444333
No 20
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=92.78 E-value=5.3 Score=37.40 Aligned_cols=121 Identities=11% Similarity=-0.007 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.++.......+ ...........+-.+|.+.|+++.+...++. ++.. ..+ .........+.+|.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-----DRIGEGRACWSLGN 315 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHH
Confidence 44555566666655544322 2445566777888999999999999988743 3321 111 13345678889999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHHHhhcCCCCC
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPK 273 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIpv~Ll~G~~P~ 273 (413)
++...+++.+|.+++..|+..++.... .....++..|.-+...+|...+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999999999999998775542 4455566666666666776543
No 21
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.76 E-value=4.5 Score=37.11 Aligned_cols=100 Identities=11% Similarity=-0.029 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..++|...+.++...+...+........+.+.+-.+|+++|+++.|-..++ +++-.. ..+ .........|.+|.+
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~--~~~--~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--RIN--SMALIGQLYYQRGEC 245 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTT--BCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--hcC--cHHHHHHHHHHHHHH
Confidence 445566666666654433222222223677788899999999999998874 443221 101 112345778999999
Q ss_pred hhhhcChHHH-HHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAA-DQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A-~~~L~~A~~~c~~~~ 250 (413)
+...+++.+| .+++..|+..+....
T Consensus 246 y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999 889999998765433
No 22
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.57 E-value=0.87 Score=36.78 Aligned_cols=87 Identities=10% Similarity=-0.077 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++.....++... ++. . ......+-.+|+++|+++.+-..++ +++-. |. .+..+|.+|.+
T Consensus 28 ~~~~A~~~~~~al~~---~p~-~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~ 90 (126)
T 4gco_A 28 DYPTAMRHYNEAVKR---DPE-N---AILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK--------FIKGYIRKAAC 90 (126)
T ss_dssp CHHHHHHHHHHHHHH---CTT-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCC-C---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh--------hhHHHHHHHHH
Confidence 456666666555443 221 1 2344556678999999999988774 44432 21 23568899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+...++|.+|.+++..|++..|.+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999988654
No 23
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.52 E-value=2.2 Score=37.63 Aligned_cols=145 Identities=10% Similarity=0.012 Sum_probs=86.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 015089 84 HYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLA 163 (413)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~ 163 (413)
....+++.+|.+.+.+.+....+.+.. +.......+.. +|...- ..+..+++...+.++...+.
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~-------l~~~~~--------~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGK-DHPAVAATLNN-------LAVLYG--------KRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCT-TCHHHHHHHHH-------HHHHHH--------TTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCC-cchHHHHHHHH-------HHHHHH--------HhccHHHHHHHHHHHHHHHH
Confidence 355778999999888877654443221 11122222221 221110 11244555555555554432
Q ss_pred CC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHH
Q 015089 164 GK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKL 239 (413)
Q Consensus 164 ~d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~--~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L 239 (413)
.. +............+-.+|++.|+++.+...++ +++.. ...+ .....+...+.+|.++...+++.+|.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP----DDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11 01123445667778889999999999998874 33321 0110 12345677889999999999999999999
Q ss_pred HHHHHhcCc
Q 015089 240 SYALINCNP 248 (413)
Q Consensus 240 ~~A~~~c~~ 248 (413)
..|+..++.
T Consensus 193 ~~~l~~~~~ 201 (283)
T 3edt_B 193 KEILTRAHE 201 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 24
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.04 E-value=4.6 Score=36.30 Aligned_cols=97 Identities=11% Similarity=-0.030 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++...+.++...+...++ ..........+-.+|++.|+++.+...++. ++.. +.. -.........+.+|.+
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~--~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA--QEL--KDRIGEGRACWSLGNA 312 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--Hhc--CCcHHHHHHHHHHHHH
Confidence 344555555555554443222 344556677888999999999999988853 3321 110 0123455678889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCc
Q 015089 226 EVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
+...+++.+|.+++..|+..++.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 25
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.67 E-value=7.1 Score=36.95 Aligned_cols=143 Identities=12% Similarity=0.046 Sum_probs=88.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhhC
Q 015089 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (413)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (413)
...+++.+|.+.+.+.+...-. .. +..+....+. .+|.. .. ..+..+++...+.++......
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~-------~la~~---~~-----~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 234 YLLGDFQAAIEHHQERLRIARE-FG--DRAAERRANS-------NLGNS---HI-----FLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-HT--CHHHHHHHHH-------HHHHH---HH-----TTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHh-cC--CcHHHHHHHH-------HHHHH---HH-----HCcCHHHHHHHHHHHHHHHHH
Confidence 4567888888887776653332 11 1111111111 12211 11 113455666666666655543
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHH
Q 015089 165 KGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYA 242 (413)
Q Consensus 165 d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A 242 (413)
.+ ...........+-.+|.+.|+++.+...++. ++.. ..+ .........+.+|.++...+++.+|.+++..|
T Consensus 296 ~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 296 LG-EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-----DRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22 2345566777888999999999999988853 3321 111 12345567888999999999999999999999
Q ss_pred HHhcCccch
Q 015089 243 LINCNPQSE 251 (413)
Q Consensus 243 ~~~c~~~~~ 251 (413)
+..++....
T Consensus 370 l~~~~~~~~ 378 (411)
T 4a1s_A 370 LQLAXXXXX 378 (411)
T ss_dssp HHHCCHHHH
T ss_pred HHHHhhccc
Confidence 999885543
No 26
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.52 E-value=1.5 Score=34.82 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.++...+...+ .........+.+-.+|+..++++.+...++. ++.. ..+ .........+.+|.
T Consensus 24 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-----DRAVEAQSCYSLGN 97 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHH
Confidence 34455555555555443321 1344556777889999999999999988853 3321 111 12345677889999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++...++|.+|.+++..|+..++..
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999876543
No 27
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.48 E-value=3.6 Score=37.77 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.++........ ...+...+.+.+-.+|++.|+++.+...++ +++.. ..|. .....+...|.+|.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCS-CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHH
Confidence 44566666666666333222 234556678899999999999999998874 44321 1221 23456678999999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 015089 225 LEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
++...++|.+|.+++..|+..++.
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 28
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.48 E-value=3 Score=35.05 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+.+++...+.++... |+.-- .....+=.+|+++|+++.+-..++ +++-. |. -...+|.+|..
T Consensus 51 ~~~eA~~~~~~al~~---~P~~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~--------~~~~~~~lg~~ 113 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIY---DFYNV----DYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN--------DYTPVFHTGQC 113 (151)
T ss_dssp CHHHHHHHHHHHHHH---CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS--------CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCCH----HHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC--------CcHHHHHHHHH
Confidence 556666655554433 22111 233445578999999999988874 44322 21 12578899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccchHHH
Q 015089 226 EVFNENFPAADQKLSYALINCNPQSEANI 254 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~~~nk 254 (413)
++..+++.+|.++|..|+..+|.+..+.+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~~~~~ 142 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEKLKIK 142 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999997664433
No 29
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.24 E-value=2.6 Score=34.88 Aligned_cols=88 Identities=6% Similarity=-0.043 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++...+.++....-.+ ..+...+-.+|+++++++.+...++ +++.. |. ....+|.+|.+
T Consensus 26 ~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~ 88 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIAPAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK--------YSKAWSRLGLA 88 (164)
T ss_dssp CHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHH
Confidence 4555666666555443221 2345566778999999999998874 44322 21 24678999999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccch
Q 015089 226 EVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
++..++|.+|.++|..|+...|....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999887654
No 30
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.21 E-value=6.5 Score=35.96 Aligned_cols=97 Identities=10% Similarity=-0.017 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..++|.....++......-+........+.+.+-.+|+++|+++.|...++ +++-.. ... .........+..|.+
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~--~~~--~~~~~~~~~~~lg~~ 245 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--RIN--SMALIGQLYYQRGEC 245 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTT--BCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HcC--cHHHHHHHHHHHHHH
Confidence 345555555555543332212345566678889999999999999998874 444221 101 122346788999999
Q ss_pred hhhhc-ChHHHHHHHHHHHHhcC
Q 015089 226 EVFNE-NFPAADQKLSYALINCN 247 (413)
Q Consensus 226 ~~~~~-~~~~A~~~L~~A~~~c~ 247 (413)
+...+ +|.+|.+++..|+..+.
T Consensus 246 ~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 246 LRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999 57999999999998654
No 31
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.11 E-value=3.3 Score=31.52 Aligned_cols=88 Identities=15% Similarity=-0.059 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+.+...+.++....-.+ ......+-.+|++.++++.+...++..-.. .|. . ....+.+|.++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~~~~~~ 90 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPA------Y--SKAYGRMGLAL 90 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-Ccc------C--HHHHHHHHHHH
Confidence 3445555555554432211 234456677889999999999888544322 121 1 35678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+.+..|+...|...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhCCHHHHHHHHHHHHhcCccch
Confidence 999999999999999999988554
No 32
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.11 E-value=4 Score=36.44 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 015089 77 PLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLM 156 (413)
Q Consensus 77 ~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~ 156 (413)
.|......+..+++.+|.+.+.+++. . .++..+....++..+.-+. . .+..+++...+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~----~--~p~~~~~~~a~~~lg~~~~-------~--------~~~~~~A~~~~~ 76 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFT----Y--GRTHEWAADAQFYLARAYY-------Q--------NKEYLLAASEYE 76 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGG----G--CSCSTTHHHHHHHHHHHHH-------H--------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH----h--CCCCcchHHHHHHHHHHHH-------H--------hCcHHHHHHHHH
Confidence 34555666778899999887665543 1 1233343443333222111 0 134566666666
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHHHHHHh--------cCChhhHHHHHHHhhccCCCCCCCCCccch------------h
Q 015089 157 KVFGVLAGKGSKRVGALYLTCQLFKIYFK--------LGTVHLCRSVIRSIETARIFDFEEFPKRDK------------V 216 (413)
Q Consensus 157 ~~f~~~~~d~~Kk~~~~~l~n~l~kiYfk--------l~~~~l~~~i~k~i~~~~~p~~~~~p~~~~------------v 216 (413)
++...--.+. ... .....+-.+|++ .|+++.+...++.+-.. .|.. +.... .
T Consensus 77 ~~l~~~p~~~-~~~---~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 77 RFIQIYQIDP-RVP---QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNH---ELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHHHHCTTCT-THH---HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTC---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCc-hhH---HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCc---hhHHHHHHHHHHHHHHHH
Confidence 6555432221 111 223344567788 99999999888654332 2321 11111 1
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.-.|.+|.+++..++|.+|...+..++...|.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 1128999999999999999999999999988643
No 33
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.09 E-value=2.8 Score=34.67 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+-.+|+++|+++.+...++..-.. .|. -...+|++|..++..+++.+|.++|..|+..+|.+
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVM-DIX--------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45677899999999999888543222 121 12567899999999999999999999999998853
No 34
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.93 E-value=3.1 Score=33.60 Aligned_cols=64 Identities=9% Similarity=-0.041 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+-.+|++.++++.+...++..-.. .|. -...+|.+|.++...+++.+|.++|..|+...|.+
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALM-DIN--------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 35566789999999999888543222 121 12467899999999999999999999999988744
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.85 E-value=9.6 Score=36.01 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
.+++...+.++.......+ ...........+-.+|++.|+++.+...++. ++.. |.. -.........+.+|.++
T Consensus 199 ~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REF--GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hhc--CCcHHHHHHHHHHHHHH
Confidence 5666666666555443221 2344556777888999999999999988743 3321 110 01233456788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+..+++.+|.+++..|+..++..
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHCcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987754
No 36
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.81 E-value=2.9 Score=32.42 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
..+-.+|++.|+++.+...++.+-.. .|. . .......|.+|.+++..+++.+|.+.|..++...|.+..
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~---~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVSR-YPT---H--DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT---S--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH-CCC---C--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 34567789999999999888544322 232 1 113456889999999999999999999999999886543
No 37
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.58 E-value=7.3 Score=33.13 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCc---------hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSK---------RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT 217 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~K---------k~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~ 217 (413)
..+++...+.++...+-.+... +.....+...+-.+|+++++++.+...+...-.. .| +...
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~ 123 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DK--------NNVK 123 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST--------TCHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cc--------ccHH
Confidence 4556666666665544433211 1111245667778899999999998887433222 12 1246
Q ss_pred hhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..|.+|..++..++|.+|.++|..|+...|...
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 789999999999999999999999999988553
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.41 E-value=0.96 Score=37.56 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 179 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+=++|++.++++.+...++ +++.. |. -...++.+|.++...+++.+|.+++..|++..|.+.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ--ER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 4567999999999998885 44432 21 236789999999999999999999999999988654
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.39 E-value=2.3 Score=32.80 Aligned_cols=68 Identities=12% Similarity=-0.126 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.....+-.+|++.++++.+...++..-.. .|. .....+.+|.+++..+++.+|.+++..|+...|...
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQL-EPT--------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 34556667899999999999887543222 121 235788999999999999999999999999887654
No 40
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.37 E-value=8.6 Score=33.61 Aligned_cols=66 Identities=8% Similarity=-0.042 Sum_probs=43.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCc---------cchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 184 FKLGTVHLCRSVIRSIETARIFDFEEFPK---------RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 184 fkl~~~~l~~~i~k~i~~~~~p~~~~~p~---------~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...++++.+...++.+-.. .|.-...+. .....+.+..|.+++-.++|.+|...+..+++..|.+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred cCcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 3456777777777554332 332111110 01123447899999999999999999999999998654
No 41
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.12 E-value=1.3 Score=33.83 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+=.+|++.|+++.+...++..-.. .|. .....+.+|..+...+++.+|.+.+..|+..++...
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVET-DPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 344557889999999999888543222 122 124788999999999999999999999999877554
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=90.08 E-value=11 Score=34.30 Aligned_cols=92 Identities=11% Similarity=-0.034 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-. ...........+-.+|++.|+++.+...++..-.. .|. .....+..|.++
T Consensus 249 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~ 316 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPS---VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPD--------NVNALKDRAEAY 316 (359)
T ss_dssp CHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 445555555555443222 22233345566788999999999999988544332 121 135788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+++..|++..|.+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999888654
No 43
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=89.92 E-value=8.7 Score=36.44 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..++|...+.++...+...+. ........+.+-.+|++.|+++.+...++ +++-..- ...|.. ..-.+.+|.+
T Consensus 197 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~--~~~~~~la~~ 270 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---KVPDLL--PKVLFGLSWT 270 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCGGGH--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---hCChhH--HHHHHHHHHH
Confidence 445566666666665543222 33556677888899999999999998874 4431100 011222 5778899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+...+++.+|.+++..|+..++...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999987543
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.86 E-value=9.5 Score=33.31 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=85.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhh
Q 015089 84 HYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLA 163 (413)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~ 163 (413)
....+++.+|.+.+.+.+....+.... +.......+.. +|.. .. ..+..+++...+.++...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~-------la~~---~~-----~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQLNN-------LALL---CQ-----NQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH-------HHHH---HH-----TTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHH-------HHHH---HH-----HcCCHHHHHHHHHHHHHHHH
Confidence 345678999999888887755544322 11112211111 2211 11 11345556666666655532
Q ss_pred CC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc---CCCC--------------------------------
Q 015089 164 GK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA---RIFD-------------------------------- 206 (413)
Q Consensus 164 ~d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~---~~p~-------------------------------- 206 (413)
.. +............+-.+|++.|+++.+...++. ++.. ..+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 21 111233455677788999999999999988843 3210 0000
Q ss_pred --CCCC--CccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHh
Q 015089 207 --FEEF--PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 207 --~~~~--p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
+... .........+.+|.++...+++.+|.+.+..|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0000 12345567888999999999999999999999863
No 45
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.75 E-value=9.6 Score=34.79 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.+++....... ..++.....+.+-.+|+..|+++.+...+ ++++-. ..|. .....+...+..|.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSS-CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cccchHHHHHhHHH
Confidence 45566666777766544322 23445678889999999999999999888 455321 1221 11223368899999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcC
Q 015089 225 LEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
++...++|.+|.+++..|+..++
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=89.62 E-value=13 Score=34.39 Aligned_cols=128 Identities=13% Similarity=-0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 171 GALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 171 ~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
......+.+-.+|.+ ++++.+-..+ ++++-. |... ........++-+|.++...++|.+|.+++..|+..++..
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 344556667778888 9999887776 344321 1100 112345667788999999999999999999999987754
Q ss_pred ch-HHHHHHHHHHHHHHhhcCCCCChh-hhccc----c------ccchHHHHHHHHhCCHHHHHHH
Q 015089 250 SE-ANIRMILKYLIPVKLSIGILPKDW-LLEKY----N------LVEYSNIVQALRRGDLRLLRHA 303 (413)
Q Consensus 250 ~~-~nk~~IL~yLIpv~Ll~G~~P~~~-ll~~~----~------l~~y~~L~~air~Gdl~~f~~~ 303 (413)
.. ......+.-+.-+.+-+|+...-. .+++. . ......+..++..||...|.++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~~ 254 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRV 254 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 42 222223333444444446532211 12211 0 0124577888999999999883
No 47
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.47 E-value=3 Score=32.45 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
......+-.+|++.|+++.+...++..-.. .|. . ...++.+|..+...+++.+|.+.|..|+...|.+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN------H--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 345566778899999999999888543222 232 2 46788899999999999999999999999887554
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=89.36 E-value=1.3 Score=34.98 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.++++.+...++..-.. .|. .....+.+|.++
T Consensus 24 ~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~ 87 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cch--------hHHHHHHHHHHH
Confidence 4455555555554432221 235566678899999999998887543322 121 245788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 015089 227 VFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
...++|.+|.+++..|+...|.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999998875
No 49
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=89.28 E-value=2.5 Score=31.38 Aligned_cols=89 Identities=7% Similarity=-0.090 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-. .. .....+-.+|++.++++.+...++..-.. .| ........+.+|.++
T Consensus 21 ~~~~A~~~~~~a~~~~~~----~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~------~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPE----ES---KYWLMKGKALYNLERYEEAVDCYNYVINV-IE------DEYNKDVWAAKADAL 86 (112)
T ss_dssp CHHHHHHHHHHHHHHCCC----CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SC------CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcC----CH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-Cc------ccchHHHHHHHHHHH
Confidence 445555555555443221 11 23345567789999999998887543322 12 211345788999999
Q ss_pred hhh-cChHHHHHHHHHHHHhcCcc
Q 015089 227 VFN-ENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~-~~~~~A~~~L~~A~~~c~~~ 249 (413)
... +++.+|.+++..+....|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999988754
No 50
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=89.20 E-value=5.7 Score=29.83 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.++++.+...++..-.. .| .. ....+.+|.++
T Consensus 24 ~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~------~~--~~~~~~la~~~ 87 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP------NN--AEAWYNLGNAY 87 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT------TC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CC------cc--HHHHHHHHHHH
Confidence 3455555555554432111 234456678899999999999888554322 12 11 24667899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+.+..|+...|...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999887544
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.20 E-value=12 Score=33.46 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccC-CCCCCCCCccchhhhhhhhHHH
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETAR-IFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~-~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
.+++...+.++...+...+ ...........+-.+|+..|+++.+...++. ++... .+ .........+.+|.+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHH
Confidence 5555555555554433211 2344455677788999999999999988753 33211 11 123445688999999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++..+++.+|.+.+..|+..++...
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998877543
No 52
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.12 E-value=4.3 Score=32.00 Aligned_cols=91 Identities=10% Similarity=-0.048 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++... +++ ..........+-.+|++.++++.+...++..-.. .| . .....|..|.++
T Consensus 43 ~~~~A~~~~~~a~~~---~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~--~~~~~~~~a~~~ 109 (148)
T 2dba_A 43 DYGGALAAYTQALGL---DAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DG------G--DVKALYRRSQAL 109 (148)
T ss_dssp CHHHHHHHHHHHHTS---CCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TS------C--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH---ccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Cc------c--CHHHHHHHHHHH
Confidence 445555555544432 221 1122345556677899999999998887543222 12 1 146788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+++..|+...|...
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999887543
No 53
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.79 E-value=2.1 Score=33.27 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+-..|++.|+++.+...++.+-.. .|. ........|.+|..++..++|.+|.+.+..++...|.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-YPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-CCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 345788999999999988655432 232 11223578899999999999999999999999988755
No 54
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=88.78 E-value=4.2 Score=36.85 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHh-hcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSI-ETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i-~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+.+-.+|++.|+++.+...++.. +.. ..+. ...........+.+|.++...+++.+|.+++..|+...|...
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC--SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc--cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 45567788999999999999888543 321 1111 111233456788999999999999999999999999887644
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.69 E-value=11 Score=32.51 Aligned_cols=73 Identities=10% Similarity=-0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.....+-.+|.+.|+++.+...++..-.. .|. +.......+...+..|.++...++|.+|.+++..|++..|.
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKA-VPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 34556777899999999999888544322 221 11112234477899999999999999999999999998876
No 56
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.68 E-value=5.8 Score=32.55 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+...+-.+|+++|+++.|-..+. +++.. |. .+..+|..|..++..++|.+|..+|..|+...|.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET--------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc--------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3466777889999999999987764 44432 21 236789999999999999999999999999988654
No 57
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.63 E-value=2.1 Score=31.94 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=49.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh-hhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT-YMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~-y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
-..|++.++++.+...++..-.. .|. -.. .++.+|..++..++|.+|.+++..|+...|....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT-EPV--------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CSS--------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 45788899999998888544322 121 124 7889999999999999999999999999886653
No 58
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=88.30 E-value=4.6 Score=30.08 Aligned_cols=88 Identities=10% Similarity=-0.083 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.++++.+...++..-.. .| . .....+..|..+
T Consensus 19 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~--~~~~~~~~a~~~ 82 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KP------D--WGKGYSRKAAAL 82 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT------T--CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh-Cc------c--cHHHHHHHHHHH
Confidence 4455555555554432221 224455667889999999999887544322 12 1 235678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+++..|+...|...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999887554
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.18 E-value=5.6 Score=32.25 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.++++.+...++..-.. .|. .....+..|.++
T Consensus 57 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 120 (186)
T 3as5_A 57 AVDRGTELLERSLADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPI--------NFNVRFRLGVAL 120 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcH--------hHHHHHHHHHHH
Confidence 3455555555555442211 123455667889999999999888654332 121 135678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+++.+|.+.+..|+..+|..
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCcHHHHHHHHHHHHhcCccc
Confidence 99999999999999999987754
No 60
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=88.03 E-value=7.5 Score=32.49 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..+++...+.++...+...+ .........+.+-.+|...|+++.+...+. +++.. ..++ .........+.+|.
T Consensus 41 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~lg~ 115 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE----DPLAASANAYEVAT 115 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHH
Confidence 34555566666666555432 234556677888899999999999988874 44322 1221 11245677889999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 015089 225 LEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
++...+++.+|.+++.+|+..++.
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 61
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.92 E-value=3.6 Score=32.13 Aligned_cols=83 Identities=11% Similarity=-0.058 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++...+.++....-.+ ......+-.+|+++++++.+...++ +++.. |. ....+|.+|..
T Consensus 19 ~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~ 81 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN--------FVRAYIRKATA 81 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------cHHHHHHHHHH
Confidence 4555665666555442221 2345566778999999999988874 34321 21 23578899999
Q ss_pred hhhhcChHHHHHHHHHHHHhc
Q 015089 226 EVFNENFPAADQKLSYALINC 246 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c 246 (413)
++..++|.+|.+++..|+...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999988
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=87.87 E-value=18 Score=34.06 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..++|...+.++...+...+ .........+.+-.+|++.|+++.+...++ +++-.. .. .......-.+.+|.
T Consensus 199 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-----ILPSLPQAYFLITQ 272 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHH
Confidence 45566666666666554332 234555677778899999999999998874 444210 00 11233577889999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++...+++.+|.+++..|+..++...
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887544
No 63
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=87.80 E-value=4 Score=29.35 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+-.+|++.++++.+...++..-.. .|. .....+.+|.+++..+++.+|.+++..|+...|...
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 3445567889999999998887433221 121 135678999999999999999999999999877543
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=87.62 E-value=13 Score=32.19 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++......+ ......+-.+|++.|+++.+...++..-.. | ..| ......+.+|.++
T Consensus 86 ~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~---~~~--~~~~~~~~la~~~ 151 (252)
T 2ho1_A 86 EPKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQD--T---LYP--ERSRVFENLGLVS 151 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--T---TCT--THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--c---cCc--ccHHHHHHHHHHH
Confidence 4455555555555442211 234456677889999999999888544321 1 112 2345778899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+..+++.+|.+++..|+...|..
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHcCCHHHHHHHHHHHHhcCccc
Confidence 99999999999999999987754
No 65
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.49 E-value=14 Score=34.54 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCCCCc-cchhhhhhhhH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEEFPK-RDKVTYMYYTG 223 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p~~~~~p~-~~~v~y~YY~G 223 (413)
..+.+...+.+........+ ...+.....+.+-.+|+..|+++.+...++ +++... ... +. .......+.+|
T Consensus 68 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la 142 (373)
T 1hz4_A 68 ELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL----EQLPMHEFLVRIRA 142 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----TTSTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----ccCcHHHHHHHHHH
Confidence 34455555555555443322 234455667778889999999999988874 333211 111 11 23445667799
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCC
Q 015089 224 RLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP 272 (413)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P 272 (413)
.++...+++.+|..++..|+..++.......-..+..+.-+.+..|...
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999886543322233334444444456643
No 66
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=87.45 E-value=5.3 Score=29.81 Aligned_cols=63 Identities=11% Similarity=-0.082 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+-..|++.|+++.+...++ +++.. |. . ....+.+|..++..++|.+|.+++..|+...|..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ--PQ------N--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC--TT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CC------C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 445578899999999988874 34322 21 1 3568899999999999999999999999998876
No 67
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.24 E-value=5.4 Score=30.35 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.++++.+...++..-.. .|... -.........+.+|.++
T Consensus 19 ~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENR-EDYRQIAKAYARIGNSY 89 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHST-TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccccc-hhHHHHHHHHHHHHHHH
Confidence 4455555566555442211 234456677899999999998887543221 11100 01112256788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 015089 227 VFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
...+++.+|.+++..|+...|.
T Consensus 90 ~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998773
No 68
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.19 E-value=8 Score=29.19 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+-.+|++.++++.+...++..-.. .| . .....+..|.++...+++.+|.+.+..+....|..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALEL-DP------R--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CT------T--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH-CC------C--chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 345677888899999998888554332 12 1 12456778999999999999999999999877643
No 69
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=87.15 E-value=2.7 Score=32.44 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|...+..|+...|...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF-DPT--------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 4445667899999999998888533222 121 235678999999999999999999999999877543
No 70
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.11 E-value=2.6 Score=33.84 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 179 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+=..||+.|+++.+-..++ +++.. |. ....++..|..++..++|.+|.+++..|++..|...
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD--PE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 3457899999999988884 45432 21 236788999999999999999999999999877554
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.06 E-value=19 Score=33.41 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHHH
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
.+++...+.++...+...+ .........+.+-.+|+..|+++.+...++ +++.. ..+ .....+...+.+|.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHH
Confidence 5566666666655544322 234455677778899999999999988874 33321 111 123455688899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHHhhcCCC
Q 015089 226 EVFNENFPAADQKLSYALINCNPQSEA-NIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~~~-nk~~IL~yLIpv~Ll~G~~ 271 (413)
+...+++.+|.+++..|+..++..... ..-.++..+.-+-.-.|++
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999999999999999887754322 2223333333333334553
No 72
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=86.96 E-value=20 Score=34.15 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++.... ++...........+-.+|.+.|+++.+...++..-.. .|. .....+.+|..+
T Consensus 272 ~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~--------~~~~~~~l~~~~ 339 (450)
T 2y4t_A 272 RYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPD--------NVNALKDRAEAY 339 (450)
T ss_dssp CHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 3455555555554422 1122233456777888999999999999888544222 121 225778899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+.+..|++..|.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999888654
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=86.71 E-value=8.8 Score=30.75 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+.+...+.++....-.+ ......+-.+|++.++++.+...++..-.. .|. .....+..|.++
T Consensus 28 ~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~ 91 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL-DKK--------YIKGYYRRAASN 91 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 3455555555554432211 234445667889999999998887543322 121 135678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...++|.+|.+++..|+...|...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999888544
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=86.07 E-value=16 Score=31.46 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC-----------------
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE----------------- 209 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~----------------- 209 (413)
..+++...+.++......+.............+-.+|.+.|+++.+...++..-.. .|.-+.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CchhHHHHHHhHHHHHHHHHHHH
Confidence 34555555555555443332223333456677778888999998888877533221 011000
Q ss_pred -CCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 210 -FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 210 -~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..........+..|.+++..++|.+|.+++..|+...|..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 0012344678889999999999999999999999987754
No 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=85.87 E-value=12 Score=34.89 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=20.4
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+.+|.++...++|.+|.+.+..|+...|..
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345556666666666666666666666665543
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.57 E-value=3.8 Score=30.31 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.+-.+|++.++++.+...++..-.. .|. .....+..|.+++..++|.+|.+++..|++..|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL-DPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4556788999999998888543222 121 1346788999999999999999999999998876
No 77
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=84.57 E-value=19 Score=30.98 Aligned_cols=85 Identities=8% Similarity=-0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~ 217 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPN--------FVRAYIRKATAQ 217 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHH--------HHHHHHHHHHHH
Confidence 3455555555554432211 234556677889999999998887543222 121 235678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcC
Q 015089 227 VFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (413)
...+++.+|.+++..|++..|
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCh
Confidence 999999999999999998873
No 78
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=84.50 E-value=4.6 Score=33.65 Aligned_cols=65 Identities=11% Similarity=-0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
....+-.+|+++|+++.+-..++..-.. .|. .....+.+|.++...+++.+|.+++..|++.-|.
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISI-KPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHh-cch--------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 3345567899999999998887533222 121 2356788999999999999999999999987664
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=84.39 E-value=11 Score=28.31 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
....+-.+|++.|+++.+...++..-.. .| .. ....+.+|.++...+++.+|.+.+..++...|.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~------~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DP------RS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CT------TC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC------CC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 3445678899999999999888654332 12 11 245677899999999999999999999987764
No 80
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=84.35 E-value=8 Score=28.66 Aligned_cols=65 Identities=3% Similarity=-0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+-..|+..++++.+...+...-.. .|. .....+..|..++..++|.+|.+.+..|+...|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL-DPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 345567888999999999888544322 121 14678899999999999999999999999987743
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.27 E-value=24 Score=32.11 Aligned_cols=101 Identities=9% Similarity=-0.088 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++.....++......++. ........+.+-.+|.++|+++.+-..++..-.. .|.. ....-....+.+-.|.++
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~-~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGN-RLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSC-TTTGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcC-CcccHHHHHHHHHHHHHH
Confidence 345555556666555443322 3344456777888999999999999888543322 1211 001111223567789999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+++..|+...|...
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC-----
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999998877544
No 82
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=84.25 E-value=14 Score=32.41 Aligned_cols=92 Identities=16% Similarity=0.015 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
...+++...+.++......+ ..........+-.+|++.|+++.+...++..-.. .|. ....++.+|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~ 86 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-RPD--------MPEVFNYLGIY 86 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHH
Confidence 34555555555444332111 1122334445556666666666666665332211 111 12345566666
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++..++|.+|.+++..|+...|..
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~ 110 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTY 110 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHccCHHHHHHHHHHHHhcCccc
Confidence 666666666666666666665543
No 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=84.14 E-value=7.3 Score=29.80 Aligned_cols=65 Identities=8% Similarity=-0.182 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+-..|++.++++.+...+...-.. .| .. ....+..|.+++..+++.+|.+.+..|+...|..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~-~~------~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR-NP------KD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT-CT------TC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CC------Cc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 344556788999999999888544322 12 11 4678899999999999999999999999987753
No 84
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=83.96 E-value=12 Score=38.09 Aligned_cols=95 Identities=6% Similarity=-0.069 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc--CCCCCCCCCccchhhhhhhh
Q 015089 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA--RIFDFEEFPKRDKVTYMYYT 222 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~--~~p~~~~~p~~~~v~y~YY~ 222 (413)
+.++|.....++......- +.....+....|.|..+|...|+++.+..+.+ +++.. .+++ .+ .+..+-.+-+
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~H--p~~a~~l~nL 399 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH--NN--AQLGMAVMRA 399 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT--TC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC--CC--HHHHHHHHHH
Confidence 4455555555554433221 23467788999999999999999999998873 44321 2332 12 3466778899
Q ss_pred HHHhhhhcChHHHHHHHHHHHHh
Q 015089 223 GRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
|.+|..+|+|.+|+..+..|+.-
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999963
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=83.72 E-value=24 Score=35.11 Aligned_cols=75 Identities=11% Similarity=-0.000 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+.+..+|.+.|+++.+..+++.+-.. .|....-| ...+...+.+|..+...+++.+|.+.+..++...|.+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSCCCS-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hhccccch-hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 45678889999999999999998655322 11100112 12356788999999999999999999999999877543
No 86
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=83.69 E-value=12 Score=28.14 Aligned_cols=68 Identities=9% Similarity=-0.144 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
......+-..|+..++++.+...++..-.. .|. .....+..|.++...++|.+|.+.+..|+...|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 345556677889999999999888544322 121 13578899999999999999999999999987754
No 87
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=83.48 E-value=6.8 Score=30.58 Aligned_cols=65 Identities=9% Similarity=-0.228 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+-..|++.++++.+...++..-.. .|. .....+.+|.+++..++|.+|..++..|+...|..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhh-CcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 345567888999999999888543222 121 23678899999999999999999999999987754
No 88
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=83.45 E-value=19 Score=30.17 Aligned_cols=89 Identities=8% Similarity=-0.064 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl-~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++...+.++....-.+ ......+-.+|++. |+++.+...++..-. .|. .| ......+..|..
T Consensus 57 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~--~~~~~~~~l~~~ 122 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALA--DPT---YP--TPYIANLNKGIC 122 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STT---CS--CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcC---Cc--chHHHHHHHHHH
Confidence 3455555555555432211 12345667789999 999999988855433 121 12 234567889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+...+++.+|.+.+..|+...|..
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999887754
No 89
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.45 E-value=2.7 Score=33.66 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 178 QLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+=..|++.|+++.+-..+ ++++-. |. -..+++.+|.+++..++|.+|.+++..|+...|...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~--p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD--PS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 3446789999999998887 455432 21 246788899999999999999999999998876543
No 90
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=83.38 E-value=13 Score=33.30 Aligned_cols=89 Identities=12% Similarity=0.012 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 145 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
.+..+++...+.++......+ ......+-.+|.+.|+++.+...++..-.. .|. .....+..|.
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~ 214 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPD--------DAQLWNKLGA 214 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHH
Confidence 346667776676665543221 245566677899999999999888544322 121 1356788999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++...+++.+|.+.+..|+...|..
T Consensus 215 ~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 215 TLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999988754
No 91
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=83.37 E-value=20 Score=30.52 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++......+ ......+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~ 169 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NEN--------DTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHH
Confidence 4455556666665543222 123445667888999999988887544322 121 134678889999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+..+++.+|.+.+..|+...|..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999998887644
No 92
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.33 E-value=23 Score=33.69 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+.+.....++...+... .+......+...+-++|+..|++..+..+++.+-... .. .-.+.+.+.+....|+++
T Consensus 110 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF-KK--LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TT--SSCSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hh--cccchhHHHHHHHHHHHH
Confidence 3445555555554444332 1223345677888999999999999999987654321 11 113567889999999999
Q ss_pred hhhcChHHHHHHHHHHHHhcC
Q 015089 227 VFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (413)
...+||.+|...++.|....+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999997544
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=83.04 E-value=8.1 Score=31.96 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHH-HHhcCCh--hhHHHHHHHhhccCCCCCCCCCccchhhhhhhhH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKI-YFKLGTV--HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 223 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~ki-Yfkl~~~--~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~G 223 (413)
..+++...+.++....-.+ ......+-.+ |++.+++ +.+...++..-.. .| .. ....+.+|
T Consensus 59 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~p------~~--~~~~~~la 122 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLRGEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALAL-DS------NE--ITALMLLA 122 (177)
T ss_dssp CHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-CT------TC--HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-CC------Cc--HHHHHHHH
Confidence 3455555555554443221 1223344455 8889998 8888777433222 12 11 35678999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 224 RLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+++..++|.+|.+++..|+...|.+.
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999998664
No 94
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=83.03 E-value=22 Score=30.69 Aligned_cols=89 Identities=7% Similarity=-0.081 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++.. ..... ........+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 120 ~~~~A~~~~~~~~~--~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 185 (252)
T 2ho1_A 120 RYEEAYQRLLEASQ--DTLYP---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRN--------QPSVALEMADLL 185 (252)
T ss_dssp CHHHHHHHHHHHTT--CTTCT---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Ccc--------cHHHHHHHHHHH
Confidence 44555555555544 11111 12344556778899999999999888544322 121 135678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+..+++.+|.+.+..++...|..
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999887743
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=82.90 E-value=13 Score=31.78 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++...... . ......+-.+|.+.|+++.+...++..-.. .|. . ....+..|.++
T Consensus 72 ~~~~A~~~~~~~~~~~~~----~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~------~--~~~~~~~a~~~ 135 (243)
T 2q7f_A 72 ELERALAFYDKALELDSS----A---ATAYYGAGNVYVVKEMYKEAKDMFEKALRA-GME------N--GDLFYMLGTVL 135 (243)
T ss_dssp CHHHHHHHHHHHHHHCTT----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCC------S--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCc----c---hHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHH
Confidence 345555555555443211 1 234556678899999999999888544332 121 1 24578899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+..+++.+|.+.+..|+...|..
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHhccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999988754
No 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=82.73 E-value=8.7 Score=30.82 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+-..|++.|+++.+...++..-.. -|. ...+.+.+|..+...++|.+|.+++..|+...|.+.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML-DHY--------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4456788999999999998654322 121 236788999999999999999999999999887554
No 97
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.61 E-value=6.9 Score=39.18 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhc--cCCCCCCCCCccchhhhhhhh
Q 015089 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIET--ARIFDFEEFPKRDKVTYMYYT 222 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d-~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~--~~~p~~~~~p~~~~v~y~YY~ 222 (413)
..++|.....++......- +.....+....|.|-.+|..+|+++.+..+.+ +++. ...++ . -.+..+-.+-+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~--Hp~~a~~l~nL 388 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--Y--SLNVASMWLKL 388 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--S--CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--C--ChHHHHHHHHH
Confidence 4555666666665543221 23567788999999999999999999998874 4432 12332 1 23566777889
Q ss_pred HHHhhhhcChHHHHHHHHHHHHh
Q 015089 223 GRLEVFNENFPAADQKLSYALIN 245 (413)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (413)
|.+|..+|+|.+|...+.+|+.-
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999963
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.49 E-value=6.9 Score=32.16 Aligned_cols=67 Identities=4% Similarity=-0.175 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.....+-.+|++.++++.+...++..-.. .|. ....++.+|.+++..++|.+|.+++..|+...|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI-APA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34455667889999999999888533222 121 24688999999999999999999999999987754
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=82.25 E-value=18 Score=29.06 Aligned_cols=88 Identities=13% Similarity=-0.121 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++......+ ......+-.+|.+.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 154 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPN--------EGKVHRAIAFSY 154 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-Ccc--------chHHHHHHHHHH
Confidence 3445555555554442221 123456677899999999999888554332 121 135778999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+.+..|+...|...
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999998776543
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=82.15 E-value=24 Score=33.96 Aligned_cols=70 Identities=13% Similarity=-0.006 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 171 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 171 ~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
....+.+.+-.+|+++++++.|...++ +++.. | +....+|.+|..+...++|.+|.++|..|++..|.+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------P--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------c--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 334566777889999999999988874 44321 2 234678999999999999999999999999998864
Q ss_pred c
Q 015089 250 S 250 (413)
Q Consensus 250 ~ 250 (413)
.
T Consensus 341 ~ 341 (370)
T 1ihg_A 341 K 341 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=81.94 E-value=16 Score=31.95 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. |+ .+ .....-.+.+|.++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~---~~-~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PY----IYNRRAVCYYELAKYDLAQKDIETYFSK--VN---AT-KAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---ST----THHHHHHHHHHTTCHHHHHHHHHHHHTT--SC---TT-TCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc--cC---ch-hHHHHHHHHHHHHH
Confidence 4566666666655432221 11 2233444899999999999888544322 21 01 11234578999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChh-hhccc----c--ccchHHHH-HHHHhCCHH
Q 015089 227 VFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDW-LLEKY----N--LVEYSNIV-QALRRGDLR 298 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~-ll~~~----~--l~~y~~L~-~air~Gdl~ 298 (413)
...++|.+|.+++..|+...|.... ++..+.-+-.-.|++..-. .+++- + ...+..+. .+...|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-- 157 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLD-----MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE-- 157 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTH-----HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC--
T ss_pred HHcccHHHHHHHHHHHHhcCcccHH-----HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH--
Confidence 9999999999999999998886553 2222333333456543221 22221 1 12366777 7777774
Q ss_pred HHHHHHHHc
Q 015089 299 LLRHALEEH 307 (413)
Q Consensus 299 ~f~~~l~~~ 307 (413)
++++++..
T Consensus 158 -~~~A~~~~ 165 (272)
T 3u4t_A 158 -YVKADSSF 165 (272)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444433
No 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=81.81 E-value=9.5 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+-..|++.|+++.+...++..-.. -| . -..+.+.+|..+...++|.+|.+++..|+...|.+.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-DH------Y--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-Cc------c--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3445567889999999999888644322 12 1 235778999999999999999999999999887554
No 103
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=81.75 E-value=6 Score=30.75 Aligned_cols=64 Identities=14% Similarity=-0.077 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+=..|++.|+++.+-..++ +++.. |. ....++.+|..++..++|.+|.+++..|+...|...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA--PE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 344467889999999998884 44322 21 136889999999999999999999999999877543
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=81.60 E-value=6 Score=39.65 Aligned_cols=69 Identities=10% Similarity=-0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+.+..+|.+.|+++.+...++.+-... |+ .....+.+|.++...+++.+|.+.+..|++..|.+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN--------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC--------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 3567788899999999999999986553321 21 236788999999999999999999999999988664
No 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=81.30 E-value=6.9 Score=30.90 Aligned_cols=62 Identities=13% Similarity=-0.097 Sum_probs=47.7
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
-..|++.|+++.+...++..-.. -| . .....|.+|.++...+++.+|..+|..|+...|...
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~-~P------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK-EP------E--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-ST------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45678899999998887543222 12 1 235778999999999999999999999999888554
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=81.08 E-value=9.4 Score=35.51 Aligned_cols=91 Identities=10% Similarity=-0.045 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 145 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
.+..+++...+.++....-.. .. ....+.+-.+|.+.|+++.+...++..-.. .|. .....+.+|.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~--~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~ 255 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDM--ID---PDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPE--------DYSLWNRLGA 255 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSS--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCc--cC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHH
Confidence 456777777777666553221 01 123345567777888888888777433221 121 1245677788
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.+...+++.+|.+++..|+...|..
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 8888888888888888888877754
No 107
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=81.07 E-value=19 Score=28.48 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc-CCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA-RIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~-~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
..++|.....++... |++ . ....+.+=.+|+++|+++.|-..+ ++++-. ..+. .......-++-+|.
T Consensus 23 ~~~~A~~~y~~Al~~---~p~-~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 23 DFEKAHVHYDKAIEL---DPS-N---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA----DYKLIAKAMSRAGN 91 (127)
T ss_dssp CHHHHHHHHHHHHHH---CTT-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCC-C---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHHHH
Confidence 456666666655543 221 1 223455667899999999998776 455432 1111 11233455677999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 015089 225 LEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.+.-.++|.+|.+++..|+...|.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999999999997764
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.98 E-value=4.5 Score=38.81 Aligned_cols=115 Identities=7% Similarity=-0.028 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..++|.+.+.+.. -.++ ..+-+....+..++|.++|++++++.+++.+...+ |+ .....+.+....-.|-+.
T Consensus 115 ~~eeAL~~l~~~i---~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d--~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 115 DLDKSLETCVEGI---DNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-ED--TVSGDNEMILNLAESYIK 186 (310)
T ss_dssp CHHHHHHHHHHHH---TSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CH--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---ccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cc--ccccchHHHHHHHHHHHH
Confidence 4566666666542 1211 13557888899999999999999999998886541 10 000124555666668888
Q ss_pred hhhc--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhhcCCCCChh
Q 015089 227 VFNE--NFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDW 275 (413)
Q Consensus 227 ~~~~--~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ 275 (413)
+..+ ++.+|+..|+++...+|.. +.-..++. +.+-+|++|..+
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~p~~--~~~~lLln----~~~~~g~~~eAe 231 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTFPTW--KTQLGLLN----LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTSCSH--HHHHHHHH----HHHHHTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhCCCc--ccHHHHHH----HHHHcCCHHHHH
Confidence 8888 9999999999998888741 11112222 566667776554
No 109
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.93 E-value=21 Score=30.67 Aligned_cols=89 Identities=3% Similarity=-0.187 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-. .... ....+-.+|+++|+++.+...++..-.. .| . .....+.+|.++
T Consensus 22 ~~~~A~~~~~~al~~~~~---~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p------~--~~~~~~~l~~~~ 86 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNN---QDSV---TAYNCGVCADNIKKYKEAADYFDIAIKK-NY------N--LANAYIGKSAAY 86 (228)
T ss_dssp CHHHHHHHHHHHHHHTTT---CCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC------S--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCC---CCcH---HHHHHHHHHHHhhcHHHHHHHHHHHHHh-Cc------c--hHHHHHHHHHHH
Confidence 456666666666554321 1112 2222677899999999998887433221 12 1 346788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...++|.+|.+++..|+...|.+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcH
Confidence 999999999999999999988655
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.93 E-value=6.7 Score=32.83 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+=..|++.|+++.+...++..-.. -|. -..+.+.+|..+...++|.+|.+++..|+...|.+.
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~-~P~--------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY-DFY--------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 34446789999999999998644322 121 235888999999999999999999999999988665
No 111
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.55 E-value=13 Score=28.97 Aligned_cols=70 Identities=11% Similarity=-0.042 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.....+-..|++.++++.+...++..-.. .|. ........+.+|..++..++|.+|.+.+..|+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL-DAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccc-----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 44556678899999999999888544322 121 12246788899999999999999999999999987644
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=80.41 E-value=12 Score=27.85 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
....+-.+|++.++++.+...++..-.. .|. .....+.+|..+...+++.+|...+..++...|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3445667889999999999888544322 121 13567788999999999999999999999887644
No 113
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=80.12 E-value=13 Score=34.38 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
+.+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|.+.+..|+...|.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV-RPN--------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34455566666666665555322111 111 1234455666666666666666666666655553
No 114
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=79.66 E-value=26 Score=29.26 Aligned_cols=87 Identities=9% Similarity=-0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++.. ..+.... ......+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 92 ~~~~A~~~~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 157 (225)
T 2vq2_A 92 RPAESMAYFDKALA--DPTYPTP---YIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQ--------FPPAFKELARTK 157 (225)
T ss_dssp CHHHHHHHHHHHHT--STTCSCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc--CcCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CchHHHHHHHHH
Confidence 45566666666554 1121122 234456778899999999999888544322 121 135788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcC
Q 015089 227 VFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (413)
+..+++.+|.+.+..++...|
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887
No 115
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=79.44 E-value=9.6 Score=28.83 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+-..|++.++++.+...++..-.. .|. .....+.+|.+++..++|.+|..++..|+...|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 345667889999999999988544322 121 13677889999999999999999999999987643
No 116
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=79.41 E-value=25 Score=28.91 Aligned_cols=66 Identities=8% Similarity=-0.135 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+-.++.+.++++.+...+...... .| . .....+.+|.++...++|.+|.+.+..|++..|...
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIAL-NT------V--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc------c--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 344566788999999998887544322 12 1 225678899999999999999999999999887554
No 117
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=79.36 E-value=19 Score=35.70 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=59.3
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhc--cCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHH
Q 015089 167 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIET--ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (413)
Q Consensus 167 ~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~--~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (413)
.....+....|.|..+|...|+++.+..+.+ ++.. ...++ .+ .+..+-.+-+|.+|..+|+|.+|...+.+|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~H--p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--SH--PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--SC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--CC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999998874 3332 22332 12 3456777889999999999999999999999
Q ss_pred Hh
Q 015089 244 IN 245 (413)
Q Consensus 244 ~~ 245 (413)
.-
T Consensus 399 ~i 400 (429)
T 3qwp_A 399 DI 400 (429)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=79.15 E-value=14 Score=34.82 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+.+-.+|+++++++.|...++ +++.. |. .+..+|.+|..++..++|.+|..+|..|+...|...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SN--------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 3556677889999999999988874 44321 21 246789999999999999999999999999988553
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=78.65 E-value=22 Score=32.60 Aligned_cols=58 Identities=9% Similarity=-0.123 Sum_probs=36.2
Q ss_pred hcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 185 KLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 185 kl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+.|+++.+...++..-.. .| ........+.+|.++...++|.+|.+.+..|+...|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~-~p------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL-DP------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH-ST------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHh-Cc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 566667776666433221 12 11133566677888888888888888888888776654
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=78.64 E-value=10 Score=32.74 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
+.+.+-.+|++.|+++.+...++ +++.. |. -+..++.+|.+++..+++.+|.+++..|+..-|....
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKA--PN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34557788999999999998884 44322 21 2367889999999999999999999999999886653
No 121
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.53 E-value=19 Score=32.20 Aligned_cols=66 Identities=12% Similarity=-0.105 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|.+.+..|+...|.
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDI-NPG--------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34567778899999999999888544322 121 2346788999999999999999999999998775
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=77.44 E-value=9.5 Score=34.97 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..++|...+.++... +++ . ..+...+-.+|+++|+++.+...++..-.. . | +....+|.+|..+
T Consensus 19 ~~~~A~~~~~~al~~---~p~-~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~------p--~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 19 KYPEAAACYGRAITR---NPL-V---AVYYTNRALCYLKMQQPEQALADCRRALEL-D------G--QSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHH---CSC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-C------T--TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCc-c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C------C--CCHHHHHHHHHHH
Confidence 445555555555443 211 1 234456677899999999998887543221 1 2 1236788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcc
Q 015089 227 VFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...++|.+|...|..|+...|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999988754
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=77.25 E-value=16 Score=29.06 Aligned_cols=67 Identities=10% Similarity=-0.135 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.....+-..|++.|+++.+...+...-.. .|. .....+..|.++...++|.+|.+.+..|+...|..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 34455667889999999999888543222 121 14677889999999999999999999999987754
No 124
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=76.58 E-value=62 Score=31.95 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCC----hhhHHHHHHHhhccCCCCCCCCCccchhhhhhh
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGT----VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY 221 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~----~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY 221 (413)
+..+++...+.++.... ++--...+.++..+.+.||..++ ++.+...++..-.. .|. ..+....++.
T Consensus 193 g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~ 263 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRK-----ASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGG-----GGGCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCC-----cccCHHHHHH
Confidence 45566665555554432 22234555667777777776655 77776666433221 110 1234578899
Q ss_pred hHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+|.++...++|.+|.+++..|++.-|...
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999877543
No 125
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=76.31 E-value=14 Score=32.25 Aligned_cols=88 Identities=8% Similarity=-0.125 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++...--. . ......+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 58 ~~~~A~~~~~~al~~~~~----~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~ 121 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPD----M---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPT--------YNYAHLNRGIAL 121 (275)
T ss_dssp CHHHHHHHHHHHHHHCCC----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCC----c---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-Ccc--------ccHHHHHHHHHH
Confidence 445555555555543211 1 123455667899999999999888544322 121 136788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+..+++.+|.+.+..|++..|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999888654
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=76.17 E-value=3.8 Score=33.73 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=32.0
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+.....|.+|++|+..++|.+|.++|..|++..|.+.
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~ 65 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP 65 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3345678999999999999999999999999988654
No 127
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=75.84 E-value=20 Score=35.52 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCC--------chhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGS--------KRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVT 217 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~--------Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~ 217 (413)
+.+.|.....++....-.+.. .......+.+.+-.+|+++++++.|...++ +++.. |. .+.
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~ 352 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA--------NEK 352 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT--------CHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc--------cHH
Confidence 445555555555554333210 112224566677889999999999988874 44422 21 246
Q ss_pred hhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+|.+|..++..++|.+|..+|..|++..|...
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 789999999999999999999999999887543
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=75.83 E-value=7.6 Score=32.97 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.....+-.+|++.|+++.+...++..-.. .|. ....++.+|.+++..++|.+|.+++..|+..+|...
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINR-DKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 35566777899999999998887533222 121 235678899999999999999999999999887544
No 129
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=75.68 E-value=31 Score=29.80 Aligned_cols=88 Identities=17% Similarity=0.024 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+..+++...+.++... +++ .. .....+-.+|.+.|+++.+...++..-..+ +....++.+|.+
T Consensus 98 g~~~~A~~~~~~al~~---~P~-~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~la~~ 160 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV---NPR-YA---PLHLQRGLVYALLGERDKAEASLKQALALE----------DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHHHHHHHHHH---CTT-CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh---Ccc-cH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc----------cchHHHHHHHHH
Confidence 3555666555555433 221 11 233456678999999999988885432221 123567899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+...+++.+|.+.+..|+..-|...
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999887554
No 130
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=75.33 E-value=13 Score=28.60 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=53.0
Q ss_pred HHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch--HHHH
Q 015089 179 LFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE--ANIR 255 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~--~nk~ 255 (413)
+=+.|++.+.+..+..-++ +++... ++ ..+........+++|..+.-.|++.+|..++..|++.-|.+.. .|++
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~-~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLD-EG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-TT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhh-cc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4467888999999988774 343221 11 1122345567799999999999999999999999998886542 4554
No 131
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=75.01 E-value=13 Score=29.25 Aligned_cols=62 Identities=11% Similarity=-0.141 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
..+-.+|.+.|+++.+...++ +++.. |. ....++.+|..+...+++.+|..++..|++.-|.
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l~--P~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARMLD--PK--------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 345667889999999988874 34322 21 1247789999999999999999999999987664
No 132
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=74.96 E-value=11 Score=33.01 Aligned_cols=72 Identities=13% Similarity=-0.062 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCC---hhhHHHHHH-Hhhcc-CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 177 CQLFKIYFKLGT---VHLCRSVIR-SIETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 177 n~l~kiYfkl~~---~~l~~~i~k-~i~~~-~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
..+-.+|+.+++ ++.+...++ +++.. ..|.. .....+...+++|.++...+++.+|.+++..|+...|.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK---YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG---GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 345677777787 666666553 33321 12221 13445678899999999999999999999999999886653
No 133
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=74.56 E-value=2.5 Score=32.94 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=27.5
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
.=+|-+|+.++.+++|..|..+|..|++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 3468899999999999999999999998653
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=74.33 E-value=18 Score=35.42 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
..+-.+|+..|+++.+...++..-.. . |. ....+.+|.+++..++|.+|.+.+..|+...|
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~-~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL-H------PT---PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C------CC---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc-C------CC---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 33445556666666665555332211 0 11 23344455555555555555555555554444
No 135
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.76 E-value=27 Score=32.66 Aligned_cols=30 Identities=13% Similarity=-0.095 Sum_probs=14.9
Q ss_pred hhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 218 YMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
..+.+|..++..+++.+|.+.+..|++..|
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 344455555555555555555555554444
No 136
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=73.38 E-value=66 Score=30.80 Aligned_cols=94 Identities=3% Similarity=-0.136 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHh---cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFK---LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 223 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfk---l~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~G 223 (413)
..+++...+.++....-.+.... ........+-.+|++ .|+++.+...++..-.. .|. ....++.+|
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la 456 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIY-VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPR--------SEQAKIGLA 456 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCS-SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTT--------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHH
Confidence 34555566666655443332111 112245566778899 99999999888544322 121 235678999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 224 RLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.++...+++.+|.+.+..|+...|.+.
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 999999999999999999999988543
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=73.11 E-value=29 Score=34.63 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
+..++|...+.++....-.+ ....+.+-.+|+++++++.+...++ +++.. | . .....|.+|.
T Consensus 20 g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p------~--~~~~~~~lg~ 82 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD--K------K--YIKGYYRRAA 82 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--T------T--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C------C--CHHHHHHHHH
Confidence 45677777777666542211 2345566778999999999998874 44321 2 1 2357789999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.+...++|.+|.+.+..|++..|...
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999988654
No 138
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=73.02 E-value=45 Score=28.75 Aligned_cols=64 Identities=6% Similarity=-0.064 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccc-hhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD-KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 179 l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~-~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+-.+|++.|++..+...++.+-.. .| .+. ...-.|.+|..+.-.+++.+|.+.+..+....|.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~-~p------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD-YP------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-ST------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH-Cc------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 457899999999999888655332 23 332 23578999999999999999999999988877754
No 139
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=72.42 E-value=7.7 Score=29.32 Aligned_cols=35 Identities=9% Similarity=-0.126 Sum_probs=31.1
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....|.+|..++..++|.+|.++|..|++..|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 35788999999999999999999999999887554
No 140
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=71.45 E-value=1.1e+02 Score=32.48 Aligned_cols=87 Identities=13% Similarity=-0.035 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
+.++|...+.++... +++ . ....+.+=.+|.++|+++.+...+ ++++-. |. ...-++.+|.+
T Consensus 58 ~~~eA~~~~~~Al~l---~P~-~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~--------~~~a~~~Lg~~ 120 (723)
T 4gyw_A 58 KLQEALMHYKEAIRI---SPT-F---ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PA--------FADAHSNLASI 120 (723)
T ss_dssp CHHHHHHHHHHHHHH---CTT-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHHH
Confidence 445555555554433 211 1 123445566778888888887776 344422 21 13456788888
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+...+++.+|.+++..|++..|...
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 8888899999999988888877543
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=71.23 E-value=37 Score=28.48 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCcc--------chhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKR--------DKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~--------~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
.....+-..|++.++++.+...++ +++.. |....+... -.+...+.+|..++..++|.+|.+++..|+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455667889999999998885 34321 211111110 0146788999999999999999999999999
Q ss_pred hcCcc
Q 015089 245 NCNPQ 249 (413)
Q Consensus 245 ~c~~~ 249 (413)
..|..
T Consensus 117 ~~p~~ 121 (198)
T 2fbn_A 117 IDKNN 121 (198)
T ss_dssp HSTTC
T ss_pred hCccc
Confidence 87744
No 142
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=70.85 E-value=54 Score=28.71 Aligned_cols=68 Identities=10% Similarity=-0.047 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhh----------cChHHHHHHHHHHHHhc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN----------ENFPAADQKLSYALINC 246 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~----------~~~~~A~~~L~~A~~~c 246 (413)
-.+-.+|++.|+++.+...++.+-.. .|. ........|.+|..+.-. +++.+|...+..+.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA-YPD-----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH-CCC-----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 34567899999999999988654332 232 112346789999999865 99999999999999999
Q ss_pred Cccc
Q 015089 247 NPQS 250 (413)
Q Consensus 247 ~~~~ 250 (413)
|.+.
T Consensus 226 p~~~ 229 (261)
T 3qky_A 226 PDSP 229 (261)
T ss_dssp TTCT
T ss_pred CCCh
Confidence 9765
No 143
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=70.74 E-value=9 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=30.9
Q ss_pred hhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.....+.+|..++..++|.+|..++..|+...|..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34678889999999999999999999999987754
No 144
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=70.39 E-value=68 Score=29.65 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCc-hhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSK-RVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~K-k~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
.++++...+.+........+.. ........+.+-.+|...|+++.+...+. +++.. +... + .+.+...+.+|+
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--~-~~~~~~~~~la~ 182 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL--SSYQ--P-QQQLQCLAMLIQ 182 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTSC--G-GGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hccC--c-HHHHHHHHHHHH
Confidence 4455555555555544322111 12344555667789999999999998874 34322 2111 1 124456778999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 015089 225 LEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
++...+++.+|..++..|....+.
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987554
No 145
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.38 E-value=35 Score=31.90 Aligned_cols=185 Identities=13% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHhcCChhhHHHHHHHhhcc----C-C-CCCCCCC---ccch---hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 180 FKIYFKLGTVHLCRSVIRSIETA----R-I-FDFEEFP---KRDK---VTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 180 ~kiYfkl~~~~l~~~i~k~i~~~----~-~-p~~~~~p---~~~~---v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
++.-|.-++++.|.++++.++.. . . |..+.-+ ..|. .......+++++-.+|+.+=.++.++=...+.
T Consensus 11 l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~ 90 (274)
T 4b4t_T 11 LSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYF 90 (274)
T ss_dssp --------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34455667888888888776532 1 1 2111111 1111 13567778888888888765555554443332
Q ss_pred c-----cchHHHHHHHHHHHHHHhhcCCCCChhh-hcccc-----c--cch----HHHHHHHHhCCHHHHHHHHHHcHH-
Q 015089 248 P-----QSEANIRMILKYLIPVKLSIGILPKDWL-LEKYN-----L--VEY----SNIVQALRRGDLRLLRHALEEHED- 309 (413)
Q Consensus 248 ~-----~~~~nk~~IL~yLIpv~Ll~G~~P~~~l-l~~~~-----l--~~y----~~L~~air~Gdl~~f~~~l~~~~~- 309 (413)
. ....|+-.++-|=+..-|..|+++.+.. ++.-+ + .+| ..+-+++-.||..+|=+.+.+...
T Consensus 91 d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p 170 (274)
T 4b4t_T 91 SNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN 170 (274)
T ss_dssp TTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 1 1235777776665555455677766542 22211 1 122 578899999999999887776321
Q ss_pred -HHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCc
Q 015089 310 -QFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 383 (413)
Q Consensus 310 -~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~ 383 (413)
.....=+-.++.+.|.-+.+...|. | .+||++.++.-|.+. +.+|+...+. ..|.
T Consensus 171 ~~~~~~f~d~l~~~iR~~a~~~i~ka----Y--------~~i~l~~~~~~L~F~----s~~e~~~F~~---~~gW 226 (274)
T 4b4t_T 171 ISEFDSFTDILKSAIRDEIAKNTELS----Y--------DFLPLSNIKALLFFN----NEKETEKFAL---ERNW 226 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----C--------SSCCHHHHHHHHTCC----SHHHHHHHHH---HTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----H--------hhcCHHHHHHHhCCC----CHHHHHHHHH---HcCC
Confidence 1111111235678887776665553 5 679999999999874 6777665553 4564
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=69.86 E-value=37 Score=31.10 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHH
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 253 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 253 (413)
.++...+.++...|+++.+..+++.+-.. .|+ ....++-+|..++..++|.+|.+.|..|+..-|.+...
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~--------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~- 236 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK-CSP--------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET- 236 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence 33444445555567777777776544322 221 23456667888888888888888888888776654422
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 015089 254 IRMILKYLIPVKLSIGILP 272 (413)
Q Consensus 254 k~~IL~yLIpv~Ll~G~~P 272 (413)
+..++-+....|+.+
T Consensus 237 ----l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 237 ----LINLVVLSQHLGKPP 251 (291)
T ss_dssp ----HHHHHHHHHHTTCCH
T ss_pred ----HHHHHHHHHHcCCCH
Confidence 333444444566643
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=69.76 E-value=17 Score=29.54 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-Hhhcc------CCCCCCCCC-----ccchhhhhhhhHHHhhhhcChHHHHHHHHHHH
Q 015089 176 TCQLFKIYFKLGTVHLCRSVIR-SIETA------RIFDFEEFP-----KRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (413)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~i~k-~i~~~------~~p~~~~~p-----~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (413)
....=..||+.|+++.+-..++ +++.. ..|. -+ ....+..++.+|..++..++|.+|..++..|+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPG---EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTT---SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444556788888888877763 34321 0111 01 33456788999999999999999999999999
Q ss_pred HhcCccc
Q 015089 244 INCNPQS 250 (413)
Q Consensus 244 ~~c~~~~ 250 (413)
...|...
T Consensus 91 ~~~p~~~ 97 (162)
T 3rkv_A 91 KREETNE 97 (162)
T ss_dssp HHSTTCH
T ss_pred hcCCcch
Confidence 9887554
No 148
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=68.03 E-value=82 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccc---hh-------
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD---KV------- 216 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~---~v------- 216 (413)
..+++...+.++....-. . ......+-.+|.+.|+++.+...++..-.. .| ... .+
T Consensus 75 ~~~~A~~~~~~al~~~p~----~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLKMD----F---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NP------SENEEKEAQSQLIKS 140 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CC------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC----c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC------CChhhHHHHHHHHHH
Confidence 445556666655543211 1 234566778899999999999988655332 12 111 11
Q ss_pred ---hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 217 ---TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 217 ---~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.-.+-.|..++..+++.+|.+.+..++...|...
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 177 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 1144557778888999999999999988877543
No 149
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=67.77 E-value=24 Score=33.40 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=73.7
Q ss_pred hhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHh-hcCCCCChhhhccc-cccc-----hHHHHHH
Q 015089 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKL-SIGILPKDWLLEKY-NLVE-----YSNIVQA 291 (413)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIpv~L-l~G~~P~~~ll~~~-~l~~-----y~~L~~a 291 (413)
+|=.||.++.++++-+|+++.-.|+.+-- =..+ -.|..|+.++|.+- ++.+ |.+|+.
T Consensus 133 ~y~~~K~~l~~~~~ldAY~~vi~aLhh~A---------------rL~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~- 196 (290)
T 3c18_A 133 RFQDGRNLFSRGNYYDAYTHVHHALHHLA---------------RLSVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL- 196 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHHHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHH---------------HhheeccCCcCchhHHHHHHhcCHHHHHHHHHHhc-
Confidence 35568999999999999999999998731 1122 37999999999873 2221 333332
Q ss_pred HHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHH
Q 015089 292 LRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEV 371 (413)
Q Consensus 292 ir~Gdl~~f~~~l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~ev 371 (413)
..-++.+=-+.+=...++++. .+.+..+ +-...+..+ +..-.++..+..--.+.. . .-++
T Consensus 197 -s~E~lekrielllla~Ef~I~-------sk~~~~~-----~~Ll~~m~e----k~~~wS~~Ei~~~p~~~~--~-~idl 256 (290)
T 3c18_A 197 -SEETLEQRIHLALIGLEHLLQ-------SKVLSGG-----KYLFEVMRE----RDRPWTMHELMEESRLTE--L-KVDL 256 (290)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHH-------HTHHHHH-----HHHHHHHTT----SSSCEEHHHHHHCGGGGG--G-HHHH
T ss_pred -CcccHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHHh----cCCCCCHHHHhcCccccc--c-cCCH
Confidence 122222111111111222222 2333322 222222221 334567777665443321 1 3468
Q ss_pred HHHHHHHHHcCceeE
Q 015089 372 ECIVAILIHKNLVKG 386 (413)
Q Consensus 372 Ecila~LI~~G~IkG 386 (413)
|-++-.|+.+|+|+=
T Consensus 257 e~iL~~Lv~k~lI~~ 271 (290)
T 3c18_A 257 GSLVDFFIRKGLIRI 271 (290)
T ss_dssp HHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCeEE
Confidence 889999999999964
No 150
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.75 E-value=29 Score=29.98 Aligned_cols=66 Identities=9% Similarity=-0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccch
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
..+-..|++.|+++.+...++..-.. -| . .....+.+|..+...+++.+|...+..|+...|....
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKE-NP------Q--DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-SS------S--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34556788999999999888543222 12 1 2367889999999999999999999999999886653
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=67.46 E-value=10 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=32.5
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.....++.+|.+++..++|.+|.+++..|++..|..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456788999999999999999999999999998865
No 152
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=66.78 E-value=26 Score=33.75 Aligned_cols=66 Identities=11% Similarity=-0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
......+-.+|++.|+++.+...++..-.. . |. ....+.+|.++...+++.+|.+.+..|+...|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F------PR---VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C------CC---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C------cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence 345555666677777777776666433221 1 11 344455555555555555555555555555443
No 153
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=66.48 E-value=73 Score=28.52 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~ 226 (413)
..+++...+.++....-.+ ......+-.+|.+.|+++.+...++..-.. .| . .....+.+|.++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~------~--~~~~~~~la~~~ 198 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAASKL-KS------D--NTEAFYKISTLY 198 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CS------C--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC------C--CHHHHHHHHHHH
Confidence 4556666666665443222 235566778899999999999888654322 12 1 225678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCccc
Q 015089 227 VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...+++.+|.+.+..|+...|...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhhCccch
Confidence 999999999999999999888654
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=65.21 E-value=41 Score=31.54 Aligned_cols=76 Identities=13% Similarity=0.005 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC-------ccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
....+.+=..|++.++++.+...++ +++.. |....+. ....+..++.+|.+++..++|.+|.+++..|+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566678899999999998884 44432 2211000 112257889999999999999999999999999
Q ss_pred hcCccc
Q 015089 245 NCNPQS 250 (413)
Q Consensus 245 ~c~~~~ 250 (413)
..|...
T Consensus 225 ~~p~~~ 230 (336)
T 1p5q_A 225 LDSNNE 230 (336)
T ss_dssp HCTTCH
T ss_pred hCCCcH
Confidence 887543
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=65.12 E-value=31 Score=28.17 Aligned_cols=66 Identities=8% Similarity=-0.116 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH-hhhhcCh--HHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL-EVFNENF--PAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~-~~~~~~~--~~A~~~L~~A~~~c~~~ 249 (413)
....+-.+|+..|+++.+...++..-.. .|. .....+..|.+ ++..+++ .+|...+..|+...|..
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQL-RGE--------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCS--------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 4455667889999999999888543222 121 13567788988 8889999 99999999999987754
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=63.88 E-value=23 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhh----------------hHHHhhhhcChHHHHHHHHHHHH
Q 015089 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY----------------TGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 181 kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY----------------~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
..+++.|+++.+...++..-.. . |. ....+|+ +|..+...++|.+|..++..|++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-~------p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL-N------ID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C------HH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-C------CC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567888988888887533221 1 11 1234556 99999999999999999999999
Q ss_pred hcCccc
Q 015089 245 NCNPQS 250 (413)
Q Consensus 245 ~c~~~~ 250 (413)
..|.+.
T Consensus 83 ~~p~~~ 88 (208)
T 3urz_A 83 KAPNNV 88 (208)
T ss_dssp HCTTCH
T ss_pred HCCCCH
Confidence 988654
No 157
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=63.48 E-value=45 Score=33.48 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
..+-.+|.+.|+++.+...++..-.. .|. .....+.+|..+...+++.+|.+++..|++..|.
T Consensus 61 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 61 ARLGRVRWTQQRHAEAAVLLQQASDA-APE--------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33444566666666666555322111 111 1234555666666666666666666666665553
No 158
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=62.58 E-value=98 Score=28.64 Aligned_cols=66 Identities=9% Similarity=-0.080 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+.+-.+|.+.|+++.+...++..-.. .| +....++.+|..+...+++.+|.+++..|++.-|..
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEV-FP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTS-CT--------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456677788888888888877544221 12 123567788888888899999999999988876643
No 159
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=61.42 E-value=49 Score=28.46 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..|+++.++..+++...-.+..+.|--|..+=.-+-.+..+++++-|+.+++..-+. -..|. -..---+.+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~----hKkFA-----Kiwi~~AqF 103 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN----CKKFA-----FVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH----CTTBH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hHHHH-----HHHHHHHHH
Confidence 456666666666666555443344444444444444567889999999999766432 12342 233333556
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
-..+++...|.+-|-.|+..||...
T Consensus 104 EiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHcccHHHHHHHHHHHhccCCCcH
Confidence 6779999999999999999999654
No 160
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=61.34 E-value=52 Score=32.52 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhh
Q 015089 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF 228 (413)
Q Consensus 149 e~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~ 228 (413)
++|...+.++....-. . ....+.+=.+|++.|+++.+...++..-.. .|. ...++.+|.++..
T Consensus 120 ~~A~~~~~~al~~~p~----~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~---~~~~~~lg~~~~~ 182 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPE----L---VEAWNQLGEVYWKKGDVTSAHTCFSGALTH-------CKN---KVSLQNLSMVLRQ 182 (474)
T ss_dssp HHHHHHHHHHHHHCTT----C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-------CCC---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCC----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCC---HHHHHHHHHHHHH
Confidence 5556566655543211 1 224455667899999999999888443221 133 3788999999999
Q ss_pred h---------cChHHHHHHHHHHHHhcCccch
Q 015089 229 N---------ENFPAADQKLSYALINCNPQSE 251 (413)
Q Consensus 229 ~---------~~~~~A~~~L~~A~~~c~~~~~ 251 (413)
. ++|.+|.+++..|+...|....
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 9 9999999999999999886653
No 161
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=60.47 E-value=1e+02 Score=32.67 Aligned_cols=88 Identities=11% Similarity=-0.029 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHH
Q 015089 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGR 224 (413)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr 224 (413)
+++++|...+.++... +++ . ....+.+=.+|.++|+++.+...++ +++-. |. ....++.+|.
T Consensus 23 G~~~eAi~~~~kAl~l---~P~-~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~--------~~~a~~nLg~ 85 (723)
T 4gyw_A 23 GNIEEAVRLYRKALEV---FPE-F---AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT--------FADAYSNMGN 85 (723)
T ss_dssp TCHHHHHHHHHHHHHH---CSC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCC-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHHH
Confidence 3566666666655443 211 1 1234455667899999999988874 45432 22 2356788999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 225 LEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++...+++.+|.+++..|++..|...
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999888654
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=60.09 E-value=10 Score=35.98 Aligned_cols=65 Identities=8% Similarity=0.009 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
+.+.+-.+|+++++++.|...++ +++.. | +.+..+|.+|+.++..++|.+|.++|..|++..|.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p--------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--E--------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--T--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 44566778999999999988774 44321 2 124678999999999999999999999999887743
No 163
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.19 E-value=40 Score=33.92 Aligned_cols=67 Identities=10% Similarity=-0.051 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
....+-.+|++.|+++.+...++..-.. .| . .....+.+|..+...++|.+|.+++..|++..|.+.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL-HP------G--HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-ST------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC------C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 4455667888999999999888543222 12 1 245788999999999999999999999999888653
No 164
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=58.87 E-value=36 Score=25.27 Aligned_cols=49 Identities=8% Similarity=0.203 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
..+++++++.-++ +.-+++..-+-.|..+|.|-|-|+-..+.+-+|..+
T Consensus 20 Kvv~LedLA~~F~-----l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 20 KVVLLEDLAFQMG-----LRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp SEECHHHHHHHHC-----SCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred CeeeHHHHHHHhC-----CChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 6789999999887 578889999999999999999999988877777653
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=58.82 E-value=19 Score=26.55 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=29.4
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.-.+..|..++..++|.+|.+++..|+...|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 456789999999999999999999999988754
No 166
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.99 E-value=19 Score=27.29 Aligned_cols=33 Identities=24% Similarity=0.091 Sum_probs=29.8
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
...+.+|.+++..++|.+|...+..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 578899999999999999999999999987744
No 167
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=57.83 E-value=1e+02 Score=27.26 Aligned_cols=63 Identities=13% Similarity=-0.044 Sum_probs=35.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
.+-.+|.+.|+++.+...++..-.. .| .. ....+++|.++...+++.+|.+.+..|+...|.+
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~-~~------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQL-MK------GC--HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-TT------TC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh-cc------cc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 4455666667766666665433221 11 11 1234446777777777777777777777666544
No 168
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=57.81 E-value=9.5 Score=32.65 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.3
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++-.+.||+|.-++..+||.+|.+++..+++.=|..
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 445899999999999999999999999999988744
No 169
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=57.49 E-value=30 Score=36.23 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccchHHH
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANI 254 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk 254 (413)
....+-.+|++.|+++.+...++..-.. .|. -...+|+.|..++..++|.+|.++|..|++.-|......
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~- 504 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAER-VGW--------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK- 504 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH-
Confidence 3445567889999999999888543222 121 236789999999999999999999999999988665322
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhccc----c--ccchHHHHHH-HHhCCHHH
Q 015089 255 RMILKYLIPVKLSIGILPKDWLLEKY----N--LVEYSNIVQA-LRRGDLRL 299 (413)
Q Consensus 255 ~~IL~yLIpv~Ll~G~~P~~~ll~~~----~--l~~y~~L~~a-ir~Gdl~~ 299 (413)
..|--+-.-+|++.....+++- + ...|..+..+ .+.|+...
T Consensus 505 ----~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 505 ----LALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp ----HHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 1222333446877652233321 1 1224555433 45676543
No 170
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.88 E-value=6.7 Score=30.11 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=30.0
Q ss_pred hhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
++=++++|..++.+++|.+|..+++.++..-|.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456788999999999999999999999998876
No 171
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=55.20 E-value=32 Score=33.05 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhhCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hcc-CCCCCCCCCccchhhhhhhh
Q 015089 147 KLKAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETA-RIFDFEEFPKRDKVTYMYYT 222 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~--~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i-~~~-~~p~~~~~p~~~~v~y~YY~ 222 (413)
+.++|...+.++......+. ..........+.+-.+|+.+|+++.+...+... +-. .++. .+ ..+........
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~-~~~~~~~~~~~ 142 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PY-RIESPELDCEE 142 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SS-CCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--cc-chhhHHHHHHH
Confidence 34455555555544433211 111222345566788999999999998877433 211 1211 11 11222333445
Q ss_pred HHH--hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 223 GRL--EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 223 Gr~--~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
|.. ++-.++|.+|.++|..|+...|...
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 543 4456789999999999999888654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=54.82 E-value=59 Score=32.00 Aligned_cols=76 Identities=9% Similarity=-0.121 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC-------ccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
....+.+=..|++.++++.+...++ +++-. |....+. ....+..++.+|..++..++|.+|..++..|+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455566778999999999998874 44422 2110000 112367888999999999999999999999999
Q ss_pred hcCccc
Q 015089 245 NCNPQS 250 (413)
Q Consensus 245 ~c~~~~ 250 (413)
..|...
T Consensus 346 ~~p~~~ 351 (457)
T 1kt0_A 346 LDSANE 351 (457)
T ss_dssp HSTTCH
T ss_pred cCCccH
Confidence 877543
No 173
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.70 E-value=11 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.6
Q ss_pred hHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+|.-.+.++++.+|-.||..|++-|++..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 57778899999999999999999999543
No 174
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=54.22 E-value=32 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.9
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCcee
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~Ik 385 (413)
+-.+.++.|.+.+. ++.|||-.+|.+|-.+|+|+
T Consensus 23 GGildI~~~a~kyg-----V~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 23 GGFLDIEHFSKVYG-----VEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp TSEEEHHHHHHHHC-----CCHHHHHHHHHHHHHTTSEE
T ss_pred CCEEeHHHHHHHhC-----CCHHHHHHHHHHHHHCCCee
Confidence 46889999999987 78999999999999999996
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.63 E-value=40 Score=30.57 Aligned_cols=65 Identities=9% Similarity=-0.226 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+-..|++.|+++.+...++..-.. .|. ...+.+.+|..++..++|.+|.+.+..|+..-|...
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 34456788999999999888533222 121 246888999999999999999999999999877543
No 176
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=52.54 E-value=41 Score=35.20 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..++|...+.++...--++ - ...+.+-.+|+++|+++. ...+ ++++.. |. ....+|.+|+.
T Consensus 482 ~~~~A~~~~~~al~l~P~~---~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~--------~~~a~~~lg~~ 543 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGE---L----APKLALAATAELAGNTDE-HKFYQTVWSTN--DG--------VISAAFGLARA 543 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTC---S----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TT--------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC---h----HHHHHHHHHHHHcCChHH-HHHHHHHHHhC--Cc--------hHHHHHHHHHH
Confidence 4455555555554432221 1 122345556888899888 6555 344322 21 12467889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++..+++.+|.+++..|.+.-|...
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccH
Confidence 9999999999999999998777543
No 177
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=51.36 E-value=1.7e+02 Score=28.05 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+-.+|++.|+++.+...++..-.. .|. . ....+.+|.++...+++.+|.+.+..|+...|..
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~------~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSL-NPE------N--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33445555556655555555322211 111 0 1334555666666666666666666666555543
No 178
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=51.21 E-value=1.4e+02 Score=26.99 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHH
Q 015089 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (413)
Q Consensus 147 ~le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~ 225 (413)
..+++...+.++......++ .........+.+-.+|.++|+++.+-..++ +++.. |... .......+.+-.|.+
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY--KEME--NYPTCYKKCIAQVLV 204 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcC--ChhHHHHHHHHHHHH
Confidence 45566666666655544432 234455677788889999999999988874 34321 1100 112234466777888
Q ss_pred hhhhcChHHHHHHHHHHHHhcCccc
Q 015089 226 EVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++..+++.+|.+++..|+ ..|...
T Consensus 205 ~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 888899999999999999 777543
No 179
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.40 E-value=60 Score=29.66 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHh--hhhcChHHHHHHHHHHHHhcCccc
Q 015089 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE--VFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~--~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.....+..+|.++|+++.+...++.+-... |+ . ..+....|.+. .-.+++.+|...+..+...+|.+.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~------~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-ED------A--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------C--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cC------c--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence 355566778999999999999886664331 32 1 12333334333 334789999999999999988543
No 180
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=48.56 E-value=24 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=35.0
Q ss_pred CCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 209 EFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 209 ~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
.++..+..+-.+|.|-.++-+++|..|...+..|+..|.
T Consensus 56 ~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 56 LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999998754
No 181
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=47.92 E-value=1.2e+02 Score=27.28 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 177 CQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
..+...+.+.|+++-+..++. +++...+| | .+......-.+.+....|++.+|...+..|...+|.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~-----p-~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLP-----P-EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSC-----G-GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCC-----H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 444455556666666666653 22221111 1 112223333344555556666666666666666664
No 182
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=46.68 E-value=76 Score=30.64 Aligned_cols=32 Identities=6% Similarity=-0.171 Sum_probs=18.3
Q ss_pred hhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+++|.++...++|.+|...+..|+..-|.+
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 45555555555566666666666666555543
No 183
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.01 E-value=1.1e+02 Score=29.46 Aligned_cols=66 Identities=8% Similarity=-0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
..+.+-.+|.++|+++.+-..++ +++-. | .. ..-.+++|.++...++|.+|.+++..|++.-|...
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P------~~--~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD--A------KN--YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC--T------TC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--c------cC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 44555567888899999988874 44322 2 22 24568999999999999999999999999888654
No 184
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=44.61 E-value=34 Score=26.11 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=48.8
Q ss_pred HHHcHHHHHHhcHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCc
Q 015089 304 LEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNL 383 (413)
Q Consensus 304 l~~~~~~f~k~glyllle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~ 383 (413)
++.....|+....+..++.+ --...-++.+|..+ ++.+...|+.+.+..++.-.+...+.++++.++..+=.+|
T Consensus 8 l~~~~~ef~~~~~~~~~~~l--~~~~~~l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~- 81 (107)
T 2d58_A 8 LDEINKQFLDDPKYSSDEDL--PSKLEGFKEKYMEF---DLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS- 81 (107)
T ss_dssp HHHHHHHHHTCGGGTTCTTH--HHHHHHHHHHHTTS---CCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSS-
T ss_pred HhHHHHHhhccHHHHHHHhh--HHHHHHHHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-
Confidence 34444455554444333333 12223445566554 3445678999999999987777788999998887663333
Q ss_pred eeEEeec
Q 015089 384 VKGYFAH 390 (413)
Q Consensus 384 IkGyIs~ 390 (413)
.|.|+.
T Consensus 82 -dg~i~~ 87 (107)
T 2d58_A 82 -GETFSY 87 (107)
T ss_dssp -SSEECH
T ss_pred -CCeEcH
Confidence 466654
No 185
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=44.49 E-value=34 Score=28.22 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.3
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++-.|.||+|.-+.--++|.+|..++...++.=|..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 455899999999999999999999999999987743
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=41.91 E-value=43 Score=24.20 Aligned_cols=31 Identities=16% Similarity=-0.092 Sum_probs=27.2
Q ss_pred hhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 220 YYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
|-.|..++..++|.+|.+.+..|+...|.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 5678999999999999999999999877553
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=41.20 E-value=1.1e+02 Score=29.03 Aligned_cols=76 Identities=8% Similarity=-0.032 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhhccC-CC---CCCC--CCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 175 LTCQLFKIYFKLGTVHLCRSVIR-SIETAR-IF---DFEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~-~p---~~~~--~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
....+=..|++.++++.+...++ +++-.. .| ..+. --.......++.+|..++..++|.+|.+++..|+...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 34445567888999988887774 343100 00 0000 01123457788999999999999999999999999877
Q ss_pred ccc
Q 015089 248 PQS 250 (413)
Q Consensus 248 ~~~ 250 (413)
...
T Consensus 305 ~~~ 307 (370)
T 1ihg_A 305 SNT 307 (370)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=40.32 E-value=1.9e+02 Score=28.96 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=80.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH---HHHhh
Q 015089 86 RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMK---VFGVL 162 (413)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~---~f~~~ 162 (413)
.+++|++|-..+.+.+....+.+-. +.-++...+. .+|.....+ ++.++|.....+ ++...
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~-~Hp~~a~~~~-------nLa~~y~~~--------g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFAD-TNLYVLRLLS-------IASEVLSYL--------QAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHH-------HHHHHHHHT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHH-------HHHHHHHHh--------cCHHHHHHHHHHHHHHHHHH
Confidence 5778888888877776644444421 1112222222 222221111 233444443333 44445
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhcc--CCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHH
Q 015089 163 AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVI-RSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKL 239 (413)
Q Consensus 163 ~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~-k~i~~~--~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L 239 (413)
.+. ....+....|.|=.+|...|+++.+..++ ++++-. ..-+ .+|... .-.=-++..++-.+.|.+|+..+
T Consensus 385 lG~--~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~--~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 385 YHH--NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP--SHPITK--DLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp SCT--TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TSHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 46677889999999999999999999987 344321 1211 233222 22256677778888899999999
Q ss_pred HHHHH
Q 015089 240 SYALI 244 (413)
Q Consensus 240 ~~A~~ 244 (413)
..|-.
T Consensus 459 ~~~~~ 463 (490)
T 3n71_A 459 HKMRE 463 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88854
No 189
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.02 E-value=1.5e+02 Score=24.03 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=58.8
Q ss_pred HHHHhCCHHHHHHHHHHc-----HHHHHHhcHHHHHHHh--H-HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 015089 290 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL--E-LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 361 (413)
Q Consensus 290 ~air~Gdl~~f~~~l~~~-----~~~f~k~glyllle~l--r-~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~ 361 (413)
..+..||+...-+++++. ...|++..+-..+|+- + .-..-.|++..+ +...|+-+.+..++.-
T Consensus 16 EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~---------~~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW---------KSSTITIDQMKRGYER 86 (129)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---------HTTCSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---------HCCCcCHHHHHHHHHH
Confidence 445679999999999874 4578999888899863 1 223335555432 2367899999998863
Q ss_pred ccC-------C--CCHHHHHHHHHHHHHcCcee
Q 015089 362 LEM-------D--MDVDEVECIVAILIHKNLVK 385 (413)
Q Consensus 362 ~~~-------~--~d~~evEcila~LI~~G~Ik 385 (413)
.-. | --.+-+..+++.+|.+|.+-
T Consensus 87 v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 87 IYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHhhChHhhcCccchHHHHHHHHHHHHHCCCCC
Confidence 211 1 12466788888888888763
No 190
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=39.37 E-value=1e+02 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=15.5
Q ss_pred hhhhHHHhhh----hcChHHHHHHHHHHHHh
Q 015089 219 MYYTGRLEVF----NENFPAADQKLSYALIN 245 (413)
Q Consensus 219 ~YY~Gr~~~~----~~~~~~A~~~L~~A~~~ 245 (413)
.|.+|.++.. .+++.+|.+++..|.+.
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 4555555555 55666666666655554
No 191
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=38.99 E-value=87 Score=25.56 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 177 n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
..+-.+|.+.|+++.+...++.+-.. -|. .....-++.+|.++...|++.+|..++..|+.
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKV-NLG------AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-CTT------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh-Ccc------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 34555678888888888877543222 121 11223566778888888888888888888775
No 192
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=38.66 E-value=68 Score=21.36 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 333 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 333 kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
+++|... ++.+...|+.+.+..++.-.+...+.++++.++..+=.+| .|+|+.
T Consensus 4 ~~~F~~~---D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~--dg~i~~ 56 (67)
T 1tiz_A 4 KRVFEKF---DKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDG--NGELNA 56 (67)
T ss_dssp HHHHHHH---CTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSS--SSEECH
T ss_pred HHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC--CCcCcH
Confidence 4444444 2234578999999999987666678889888776552222 455553
No 193
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=36.89 E-value=68 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 386 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkG 386 (413)
.+++++++...|. ++++-|.-.|..|..+|+|+=
T Consensus 15 g~vsv~eLa~~l~-----VS~~TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 15 GRMEAAQISQTLN-----TPQPMINAMLQQLESMGKAVR 48 (78)
T ss_dssp CSBCHHHHHHHTT-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 6899999999987 789999999999999999854
No 194
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=36.27 E-value=80 Score=24.85 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
++.+|... ++.+...|+.+.+..++.-.+..++.++++.++..+ +| .|+|+.
T Consensus 86 l~~~F~~~---D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~--dg~i~~ 137 (146)
T 2qac_A 86 LIKMFAHF---DNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SS--EDNIDY 137 (146)
T ss_dssp HHHHHHTT---CTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CS--SSEEEH
T ss_pred HHHHHHHh---CCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CC--CCcCcH
Confidence 34555544 334557899999999998766678999999999887 33 577764
No 195
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=35.81 E-value=2.4e+02 Score=25.20 Aligned_cols=33 Identities=9% Similarity=-0.326 Sum_probs=24.5
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+|-+|..++..+++.+|.+.|..+++.-|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 466777777777888888888888887776644
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=34.96 E-value=1.1e+02 Score=28.47 Aligned_cols=76 Identities=11% Similarity=-0.124 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCC---------ccchhhhhhhhHHHhhhhcChHHHHHHHHHH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFP---------KRDKVTYMYYTGRLEVFNENFPAADQKLSYA 242 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p---------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A 242 (413)
......+=..|++.++++.+...++ +++.. |....+. .......++.+|..++..++|.+|.+++..|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566678889999999988774 34321 2100000 0001136788999999999999999999999
Q ss_pred HHhcCccc
Q 015089 243 LINCNPQS 250 (413)
Q Consensus 243 ~~~c~~~~ 250 (413)
+...|...
T Consensus 257 l~~~p~~~ 264 (338)
T 2if4_A 257 LTEEEKNP 264 (338)
T ss_dssp HHHCTTCH
T ss_pred HHhCCCCH
Confidence 99887543
No 197
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.78 E-value=54 Score=27.52 Aligned_cols=37 Identities=3% Similarity=0.074 Sum_probs=33.2
Q ss_pred CccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 347 AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 347 ~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
..++|+..+...+. ++...+-.-+..|..+|+|+||-
T Consensus 15 ~~~~s~~~la~~lg-----~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 15 DSTLAVADLAKKVG-----LSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp CSCSCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeeece
Confidence 46889999999998 68999999999999999999864
No 198
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.62 E-value=72 Score=26.88 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCC
Q 015089 333 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKS 392 (413)
Q Consensus 333 kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~ 392 (413)
+.+|... ++.+.-.|+.+.+..+|.-.+..++.+|++.++... ++| .|.|+.+.
T Consensus 87 ~~aF~~f---D~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~-dd~--dG~I~~~E 140 (176)
T 2lhi_A 87 LEAFKVF---DKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV-SDG--SGEINIQQ 140 (176)
T ss_dssp HHHHHHH---CSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH-HTT--SSCBCTTH
T ss_pred HHHHHHh---CCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh-cCC--CCeEeHHH
Confidence 4455555 334567899999999998777778999999988765 566 78888764
No 199
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=34.12 E-value=44 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.2
Q ss_pred hHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
+|.-.+.+|++..|-.||..|++-|++..
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 57777899999999999999999999543
No 200
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.80 E-value=1.3e+02 Score=22.37 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCCC
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPF 403 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~pF 403 (413)
.+++...++..|. ++...|...|..|..+|+|+=.-...-...|.+..++|
T Consensus 26 ~~~t~~eLA~~Lg-----vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 26 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp CCBCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 5899999999998 67889999999999999995322222344555544443
No 201
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=33.24 E-value=56 Score=27.24 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=32.5
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
++-.|.||++.=+.--++|.+|..+....++.-|.+.
T Consensus 76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3458999999999999999999999999999887443
No 202
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.72 E-value=91 Score=22.90 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEee
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFA 389 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs 389 (413)
.+++...++..|. ++...|...|.+|..+|+|++.-+
T Consensus 30 ~~~t~~eLA~~Lg-----vs~~tV~~~L~~L~~~G~I~~~g~ 66 (77)
T 1qgp_A 30 KATTAHDLSGKLG-----TPKKEINRVLYSLAKKGKLQKEAG 66 (77)
T ss_dssp SCEEHHHHHHHHC-----CCHHHHHHHHHHHHHHTSEEEECS
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEecCC
Confidence 4799999999997 678899999999999999987643
No 203
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=32.46 E-value=82 Score=31.24 Aligned_cols=59 Identities=15% Similarity=-0.011 Sum_probs=46.0
Q ss_pred HHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 182 IYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 182 iYfkl~~~~l~~~i~k-~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
.|++.++++.+...++ +++.. |. .....+.+|..+...++|.+|.+.+..|++..|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--Cc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 4677888888888774 44432 21 246788999999999999999999999999877543
No 204
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.40 E-value=2.2e+02 Score=23.78 Aligned_cols=86 Identities=17% Similarity=0.346 Sum_probs=58.7
Q ss_pred HHHHhCCHHHHHHHHHHc-----HHHHHHhcHHHHHHHh--H-HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Q 015089 290 QALRRGDLRLLRHALEEH-----EDQFLRSGVYLVLEKL--E-LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKW 361 (413)
Q Consensus 290 ~air~Gdl~~f~~~l~~~-----~~~f~k~glyllle~l--r-~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~ 361 (413)
..+..||+...-+++++. ...|++..+-..||+- + .-..-.|++..+ +...|+-+.+..++.-
T Consensus 18 EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~---------~~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 18 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW---------KSSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---------HTTCSCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---------HCCCcCHHHHHHHHHH
Confidence 445679999999999874 4578888888899863 1 122334444432 2378899999998863
Q ss_pred cc---------CCCCHHHHHHHHHHHHHcCce
Q 015089 362 LE---------MDMDVDEVECIVAILIHKNLV 384 (413)
Q Consensus 362 ~~---------~~~d~~evEcila~LI~~G~I 384 (413)
.- .+--.+-+..+++.+|.+|.+
T Consensus 89 vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l 120 (152)
T 2ion_A 89 IYNEIPDINLDVPHSYSVLERFVEECFQAGII 120 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCS
T ss_pred HHHhChHhccCccchHHHHHHHHHHHHHCCCC
Confidence 21 111246678889999999987
No 205
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.92 E-value=76 Score=24.28 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.+++++++...|. +++.-|.-.|..|..+|+|+=.-
T Consensus 15 g~vsv~eLA~~l~-----VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 15 GRMEAKQLSARLQ-----TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CSEEHHHHHHHTT-----CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 6789999999987 78999999999999999987654
No 206
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.39 E-value=1.6e+02 Score=25.64 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=43.0
Q ss_pred HHHHHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhh----hcChHHHHHHHHHHHHhcC
Q 015089 178 QLFKIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINCN 247 (413)
Q Consensus 178 ~l~kiYfk----l~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~----~~~~~~A~~~L~~A~~~c~ 247 (413)
.+-.+|.+ .++++.+...++..-... ...-.+.+|.++.. .+++.+|.+++..|...-+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 44456666 888888888774332111 12456889999999 9999999999999998755
No 207
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=30.77 E-value=72 Score=26.11 Aligned_cols=33 Identities=9% Similarity=-0.340 Sum_probs=29.9
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+|.+|..+...|++.+|..+|..+++..|..
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 678899999999999999999999999988753
No 208
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=30.27 E-value=59 Score=22.07 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecC
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHK 391 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~ 391 (413)
++.+|... ++.+...|+.+.+..++.-.+..++.++++.++..+=..| .|+|+.+
T Consensus 8 l~~~F~~~---D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ 62 (71)
T 2b1u_A 8 LQVAFRAF---DQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQ--DGRVNYE 62 (71)
T ss_dssp HHHHHTTS---CCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSS--SSEEETT
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcHH
Confidence 34444443 3345678999999999987666678899888776543222 4666543
No 209
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=30.19 E-value=1.7e+02 Score=27.77 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCccc
Q 015089 172 ALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (413)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~i~k~-i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (413)
...++..+.+++...+.++.+...++. ++.. | . .....+.+|.++...+++.+|.+.+..|++..|...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~------~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA--P------G--VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC--S------S--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--c------c--HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 344555566667777888888877743 3321 2 1 224567899999999999999999999999988765
Q ss_pred hH
Q 015089 251 EA 252 (413)
Q Consensus 251 ~~ 252 (413)
..
T Consensus 282 ~~ 283 (472)
T 4g1t_A 282 YL 283 (472)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 210
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=29.93 E-value=1.1e+02 Score=21.56 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
++.+|... ++.+...|+.+.+..++.-.+...+.++++.++..+=.+| .|+|+.
T Consensus 16 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--~g~i~~ 69 (85)
T 2ktg_A 16 YKEAFQLF---DKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN--SGKFDQ 69 (85)
T ss_dssp HHHHHHHT---CTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSS--CSEEEH
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 45555555 3335578999999999987666788899988876552222 466654
No 211
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.14 E-value=61 Score=30.94 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=49.5
Q ss_pred hCCHHHHHHHHHHcHHHHHHhcHHH-HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHH
Q 015089 294 RGDLRLLRHALEEHEDQFLRSGVYL-VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVE 372 (413)
Q Consensus 294 ~Gdl~~f~~~l~~~~~~f~k~glyl-lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evE 372 (413)
.||..+|=+.+......++...+.. .+.+.|..+++.+.|- +. .+...+|++.+..-|.+. +.+|++
T Consensus 176 ~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka----y~----~k~~~~pl~~L~~~L~Fd----s~ee~~ 243 (316)
T 3t5v_A 176 LNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT----LN----KKHKPIPFIYLENMLLFN----NRQEII 243 (316)
T ss_dssp CCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH----SC----TTCCCEEHHHHHHHTTCS----SHHHHH
T ss_pred cchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH----hc----cCCCCcCHHHHHHHhCCC----CHHHHH
Confidence 3899999998886433444433322 4578888777666553 42 123679999999999864 577776
Q ss_pred HHHHHHHHcCce
Q 015089 373 CIVAILIHKNLV 384 (413)
Q Consensus 373 cila~LI~~G~I 384 (413)
..+ -.-|+.
T Consensus 244 ~F~---~~~gl~ 252 (316)
T 3t5v_A 244 EFC---NYYSIE 252 (316)
T ss_dssp HHH---HHTTCC
T ss_pred HHH---HHCCCe
Confidence 655 455544
No 212
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.64 E-value=81 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 387 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGy 387 (413)
.+++...+...+. ++...+-..+..|..+|+|+++
T Consensus 18 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 18 SRLSMRELGRKIK-----LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp SCCCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEE
Confidence 5789999999998 6789999999999999999986
No 213
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=28.25 E-value=82 Score=21.75 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
++.+|... ++.+...|+.+.+..++.-.+...+.++++.++..+=..| .|+|+.
T Consensus 9 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~--~g~i~~ 62 (77)
T 2joj_A 9 IKEAFDLF---DTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREG--NGYIGF 62 (77)
T ss_dssp HHHHHHHH---CCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSS--SSEEEH
T ss_pred HHHHHHHh---CCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC--CCcCcH
Confidence 45555555 2234578999999999886666677888887776542222 456654
No 214
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=27.79 E-value=77 Score=22.49 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 386 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkG 386 (413)
..++...++..+. ++...|..++..|..+|+|..
T Consensus 24 ~~~s~~eLA~~lg-----lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQ-----VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHC-----SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEec
Confidence 4589999999997 689999999999999999853
No 215
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=27.67 E-value=1.2e+02 Score=21.47 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
++.+|... +..+...|+.+.+..++.-.+ ..+.++++.++..+=.+| .|+|+.
T Consensus 13 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~--dg~i~~ 65 (86)
T 2opo_A 13 RERIFKRF---DTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDG--DGFISF 65 (86)
T ss_dssp HHHHHHHH---CTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTC--SSEECH
T ss_pred HHHHHHHH---CCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 44555555 223457899999999998766 778899988877653333 466654
No 216
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=26.60 E-value=1.6e+02 Score=27.45 Aligned_cols=56 Identities=14% Similarity=-0.082 Sum_probs=42.6
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 182 iYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
+|++.+.+.-+...++.... .| +.-....-+||+|..+...|++.+|..+|..|..
T Consensus 144 l~~~~~r~~dA~~~l~~a~~--~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGK--WP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGG--CS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhc--cC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999988842211 11 1112235789999999999999999999999974
No 217
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.41 E-value=1.2e+02 Score=23.42 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
++.+|... ++.+...|+.+.+..++.-.+..++.++++.++..+= .| .|.|+.
T Consensus 81 ~~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~--dg~i~~ 133 (142)
T 2bl0_C 81 LRQAFRTF---DPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TE--KGQIRY 133 (142)
T ss_dssp HHHHHHHT---CCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CS--SSEECS
T ss_pred HHHHHHHH---CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CC--CCcEeH
Confidence 44555554 3345578999999999987666789999999887764 43 566654
No 218
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=26.28 E-value=83 Score=25.81 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.++++..+...+. ++...+-..+..|..+|+|++|-
T Consensus 21 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 21 ARTAYAELAKQFG-----VSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHcCCcceEE
Confidence 5789999999997 67899999999999999999863
No 219
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=26.05 E-value=90 Score=25.96 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.+++...++..+. ++...+-..+..|...|+|++|-
T Consensus 23 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 23 GRLTNVELSERVA-----LSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEeeec
Confidence 5689999999998 67889999999999999999864
No 220
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=25.98 E-value=82 Score=22.46 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeec
Q 015089 333 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAH 390 (413)
Q Consensus 333 kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~ 390 (413)
+++|... ++.+...|+.+.+..++.-.+..++.++++.++..+=.+| .|+|+.
T Consensus 26 ~~~F~~~---D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~--~g~i~~ 78 (87)
T 1s6j_A 26 KELFKMI---DTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK--SGTIDY 78 (87)
T ss_dssp TTHHHHH---CTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTC--SSEECH
T ss_pred HHHHHHH---CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCcCcH
Confidence 4444444 2234578999999999987776788999998877653222 456654
No 221
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=25.70 E-value=3.6e+02 Score=24.04 Aligned_cols=88 Identities=9% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhh
Q 015089 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (413)
Q Consensus 148 le~~a~~l~~~f~~~~~d~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~ 227 (413)
.+++...+.++...+..+ . ..+-..+..++.+.|+++.+..+++..-. ++ |..... ...-.|.+..
T Consensus 80 ~~~A~~~~~rAl~~~~p~---~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~-----p~~~~~-~~~~~~~~~~ 145 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK---N---MLLYFAYADYEESRMKYEKVHSIYNRLLA--IE-----DIDPTL-VYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT---C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SS-----SSCTHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc---c---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cc-----ccCccH-HHHHHHHHHH
Confidence 456666666665533222 1 12344556677788999999988843322 22 221111 3445578888
Q ss_pred hhcChHHHHHHHHHHHHhcCcc
Q 015089 228 FNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..+++.+|...|..|....|..
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCC
T ss_pred HhcCHHHHHHHHHHHHhcCCCC
Confidence 8899999999999999887754
No 222
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.57 E-value=37 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKG 386 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkG 386 (413)
.-.+.+.++..+. +|..+|..++.+||.+|+|.=
T Consensus 50 ~~ps~~~LA~~~~-----~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMS-----ISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSS-----SCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEE
Confidence 3456778877776 689999999999999999963
No 223
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.40 E-value=95 Score=23.71 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 015089 333 KKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 378 (413)
Q Consensus 333 kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~L 378 (413)
|.+|... +..+.-.|+.+.+..+++-.|..++.+|++.++..+
T Consensus 39 ~~~F~~~---D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 39 REAFKVF---DRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHT---CSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHH---cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4555555 334567899999999998777778888998887654
No 224
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=24.71 E-value=92 Score=28.12 Aligned_cols=62 Identities=5% Similarity=-0.149 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc
Q 015089 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (413)
Q Consensus 178 ~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (413)
.+=..+.+.|+++.+...++..-.. -| .. ...++-+|++++..+++.+|.+.|..+...-|.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~-~P------~~--~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQL-SN------QN--GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TT------SC--HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CC------cc--hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 4456678899999999988654322 12 22 357899999999999999999999999888773
No 225
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.31 E-value=99 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.++|...+...+. ++...+-..+..|..+|+|++|-
T Consensus 30 ~~~s~~eLA~~lg-----lS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 30 ARLTISELSEQLK-----KPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp TTCCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEeec
Confidence 5789999999998 67899999999999999998864
No 226
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=24.04 E-value=3.6e+02 Score=25.33 Aligned_cols=126 Identities=12% Similarity=-0.006 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 170 ~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
..++.++..-+.+.-.-++++.+-.++.-+... .|. ..+...-|. .++..++|.+|++.|....+..|.-
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~----~~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT-FPT----WKTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCS----HHHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCC----cccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 344455544444444444888888888666432 221 012222333 7999999999999999666654321
Q ss_pred --c---hHHHHHHHHHHHHHHhhcCCCCChhhhcc-ccccchHHHHHHHHhCCHHHHHHHHHHc
Q 015089 250 --S---EANIRMILKYLIPVKLSIGILPKDWLLEK-YNLVEYSNIVQALRRGDLRLLRHALEEH 307 (413)
Q Consensus 250 --~---~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~-~~l~~y~~L~~air~Gdl~~f~~~l~~~ 307 (413)
. ..+--..|.-+|.+...+|+ +...++++ ....+=.|++.-+..- -..||++..++
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~d~~~k-~~~Fd~~~~ky 306 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIKHHQEI-DAKFDELVRKY 306 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHh
Confidence 0 11234556778889999998 66666654 1222333333333332 24566666554
No 227
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.91 E-value=87 Score=25.60 Aligned_cols=36 Identities=6% Similarity=0.173 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEe
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYF 388 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyI 388 (413)
.+++...+...+. ++...+-..+..|..+|+|+++-
T Consensus 22 ~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 22 SRLTYRELADILN-----TTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp TTCCHHHHHHHTT-----SCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEEEE
Confidence 6799999999997 67899999999999999998763
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.85 E-value=1.1e+02 Score=25.72 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=31.9
Q ss_pred chhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCcc
Q 015089 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (413)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (413)
++-.|.||++.=+.--+||.+|..+....++.=|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 344899999999999999999999999999987743
No 229
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=23.32 E-value=60 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089 366 MDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQD 401 (413)
Q Consensus 366 ~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~ 401 (413)
++.+....++..|.++|+|+|.--...+ .+++..+
T Consensus 28 Ise~~~~~il~~L~d~GyI~Gv~~~~~~-~~i~~~~ 62 (102)
T 2hgc_A 28 VTEDQFDDAVNFLKREGYIIGVHYSDDR-PHLYKLG 62 (102)
T ss_dssp SCHHHHHHHHHHHHHHTSEECCEESSSS-EECCSSC
T ss_pred CCHHHHHHHHHHHHHCCCccceEEEeCc-ceeeccC
Confidence 7889999999999999999996443333 3444333
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.14 E-value=3.6e+02 Score=26.82 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHHH
Q 015089 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (413)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (413)
....|.++..|.+.|+.+.+..++..+....+. .+.+||.-.. ..++-.+++.+|++.|.+-=+
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-------Pd~~ty~~Li-~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-------PEEPELAALL-KVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-------CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------CCHHHHHHHH-HHHhhCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999998765432 2345665433 345778999999999887543
No 231
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=21.99 E-value=79 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=25.8
Q ss_pred hhhhhhHHHhhhhcChHHHHHHHHHHHHhcC
Q 015089 217 TYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (413)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (413)
.-.|.+|.++..++|+.+|.++|..|.+.-+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~ 49 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGD 49 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 4577889999999999999999999987543
No 232
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=21.61 E-value=1.7e+02 Score=24.72 Aligned_cols=57 Identities=5% Similarity=-0.043 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHhhhhcChHHHHHHHHHHHHhcCc-------cchHHHHHHHHHHHHHHhhcCCC
Q 015089 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNP-------QSEANIRMILKYLIPVKLSIGIL 271 (413)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~-------~~~~nk~~IL~yLIpv~Ll~G~~ 271 (413)
......-.|..++-.++|.+|.+.++.|++..|. ...++.-.+..-+--+-.-+|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH
No 233
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=20.99 E-value=2.5e+02 Score=22.25 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCC-CCHHHHHHHH
Q 015089 319 VLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMD-MDVDEVECIV 375 (413)
Q Consensus 319 lle~lr~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~-~d~~evEcil 375 (413)
.+.||+.+. +.+|.+|..- +.+-+|++.+...+.-|-.. ++.+|+|..+
T Consensus 11 ~~srLPelA--rilR~vFvaE------kK~vl~~e~~~~ki~~Syr~~ls~~EmE~hl 60 (106)
T 3a4c_A 11 RLERLPELA--RVLRNVFVSE------RKPALTMEVVCARMVDSCQTALSPGEMEKHL 60 (106)
T ss_dssp HHHHHHHHH--HHHHHHHHTC------SSSEEEHHHHHHHHHHTSCCSCCHHHHHHHH
T ss_pred HHHhhHHHH--HHHHHHHHhc------ccCCccHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 446777765 5666676653 56889999999998866444 7888888755
No 234
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.73 E-value=1.4e+02 Score=24.25 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEE
Q 015089 348 HQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGY 387 (413)
Q Consensus 348 ~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGy 387 (413)
.+++...+...+. ++...+-..+..|...|+|++|
T Consensus 16 ~~~~~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 16 AKYSLDEIAREIR-----IPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp TTSCHHHHHHHHT-----SCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCcEEEE
Confidence 5799999999997 6789999999999999999985
No 235
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.20 E-value=2.4e+02 Score=20.05 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 015089 332 FKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAIL 378 (413)
Q Consensus 332 ~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~L 378 (413)
++.+|..+ ++.+.-.|+.+.+..++.-.+..++.++++.++..+
T Consensus 11 l~~~F~~~---D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 54 (92)
T 2kn2_A 11 LKEAFKVF---DKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEA 54 (92)
T ss_dssp HHHHHHHH---CTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45555555 223456899999999988766667888888777654
Done!