BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015090
(413 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/419 (62%), Positives = 309/419 (73%), Gaps = 35/419 (8%)
Query: 9 SMVDVLCKAFGPCYGLKRFSIEGRLW---------IHSAPLRHYIEKVVEKQESSENSSS 59
S +++CK L + S+ +W HS P R + + K SENSSS
Sbjct: 47 SSCNIVCKV------LHKESLTRPMWNVSFLRSSSFHSTPARETGDDDISK---SENSSS 97
Query: 60 ADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVE 119
DG K+KRKKLKGKRAVVRWLK FR+KKKKE+ERMT+EEKIL KLRKARKKEER++E
Sbjct: 98 QDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLME 157
Query: 120 GLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 179
+KK+EP ES+E THDPEILTPEEHFY+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKK
Sbjct: 158 TMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217
Query: 180 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRI 239
HQTL+V++KTF+ +EVKEIA ELARLTGGIVL++HE NTIIMYRGKNY QPPTEIMSPRI
Sbjct: 218 HQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRI 277
Query: 240 TLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ--NTELD 297
TL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+AQAET+ + + +D Q + EL
Sbjct: 278 TLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELK 337
Query: 298 KPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKF 357
K S + + E D L A+DS DLSDIFETDSE E + K E RPL+L++F+KF
Sbjct: 338 KIIERSEECLEDEQEEDEAGLEL-ATDS-DLSDIFETDSELE-DAKTE-RPLFLEEFEKF 393
Query: 358 PVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED---SSHFDEVDKMFLRAASLLKKQKR 413
P N+ E EDF D AKS G++ D S +FDEVDKMFLRAA LLKK++R
Sbjct: 394 PAINNREDEDFG--------DLGKAKSEGEENDDDKSPNFDEVDKMFLRAAFLLKKKRR 444
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 105 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 163
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 164 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 220
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 221 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 250
+YRGKNY +P S L++++AL +S
Sbjct: 649 LYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 139 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 197
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 198 IAAELARLTGGIVLEIHEENTIIMYRGKNY 227
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 105 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 163
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 164 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 220
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 221 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 250
+YRGKNY +P +P L++++AL +S
Sbjct: 651 LYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 139 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 197
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 198 IAAELARLTGGIVLEIHEENTIIMYRGKNY 227
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 130 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 189
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 563 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 622
Query: 190 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 246
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KA
Sbjct: 623 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKA 681
Query: 247 LDKSKYRDGLRAVKKYIPKLEQELELLRA 275
L +S L ++K + + E+ +E L+
Sbjct: 682 LQRSVVMQRLGSLKFFAYQRERAIEDLKV 710
Score = 38.9 bits (89), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 139 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 197
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 198 IAAELARLTGGIVLEIHEENTIIMYRGKNY 227
+A EL LTGG+++ + + I++YRGK++
Sbjct: 421 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 449
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 137 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 196
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 197 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 227
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 136 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 195
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 196 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 233
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 121 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 178
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 179 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 227
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 122 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 181
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 345
Query: 182 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 233
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 137 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 194
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 195 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 227
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 154 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 213
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 214 HEENTIIMYRGKNY 227
N +I+YRG+NY
Sbjct: 221 RNINILILYRGRNY 234
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 63 AGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLK 122
G A + K+ K +R VR +E + + I+ ++R+ RK + L
Sbjct: 167 TGKAPLLTKEEKARRRGVR----LHTPLGQETPQTVSAHGIMMEVRERRKMD------LA 216
Query: 123 KIEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 179
++ P + E+ +P LTP E +K + +GR G+ ++ +H HW++
Sbjct: 217 RVSPGDGRSREEVLGEP--LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 274
Query: 180 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 227
+ KV + ++K + L +GG V IH ++ +YRG++Y
Sbjct: 275 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 160 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 219
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 308
Query: 220 I-MYRGKNY 227
+ +YRG+NY
Sbjct: 309 VFLYRGRNY 317
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 154 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 213
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 160 CTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-Y 218
Query: 214 HEENTIIMYRGKNY 227
N +++YRG+NY
Sbjct: 219 RNINILVLYRGRNY 232
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 153 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 212
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 213 IHEENTIIMYRGKNY 227
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 137 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 196
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 197 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 227
+ +L GG V+ + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 122 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 181
K + P + PE LT +E + GR+ +G+ G+Y ++ N+ ++ +
Sbjct: 344 KPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 182 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITL 241
+++ + + ++I A+L L +++ E I+++RG+ + +T
Sbjct: 404 LVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQ-ILIWRGREWKS--------SLTT 454
Query: 242 SRKKALDKSKYRDGLR--AVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKP 299
KK D L V +P+ + E + Q++T ++N + ++QN P
Sbjct: 455 PDKKG-------DILEDIEVDTALPE-DDEPSVSPNQSQTMTQNPPLDSMELQN----DP 502
Query: 300 DFGSI-PSMMECSENDPTTESLMASDSEDLSD 330
D + PS ++ SE + T SL + ++D+++
Sbjct: 503 DGHDLSPSTVDSSEMEGTINSLQSWSTKDVTE 534
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 158 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 217
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRVG 279
Query: 218 TII-MYRGKNY 227
++ ++RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>sp|P13635|CERU_RAT Ceruloplasmin OS=Rattus norvegicus GN=Cp PE=1 SV=3
Length = 1059
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 11/166 (6%)
Query: 225 KNYAQPPTEIMSPRITLSRKK--ALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSE 282
KN+A P + +T ++ A+ D RA K P +Q L +LRA + E
Sbjct: 110 KNFASRPYTFHAHGVTYTKANEGAIYPDNTTDFQRADDKLFPG-QQYLYVLRANEPSPGE 168
Query: 283 NRSDAAEDVQNTELDKPD---FGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETE 339
S+ + ++ +D P G I ++ C + SL E++ F
Sbjct: 169 GDSNCVTRIYHSHVDAPKDIASGLIGPLILCKKG-----SLHKEKEENIDQEFVLMFSVV 223
Query: 340 TEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSL 385
E + + F P + D+++EDF+E R SI+ SL
Sbjct: 224 DENLSWYLEDNIKTFCSEPEKVDKDNEDFQESNRMYSINGYTFGSL 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,000,581
Number of Sequences: 539616
Number of extensions: 6586149
Number of successful extensions: 28979
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 27775
Number of HSP's gapped (non-prelim): 1251
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)