Query 015090
Match_columns 413
No_of_seqs 190 out of 614
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 06:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 6.7E-29 2.3E-33 209.5 13.9 91 138-230 1-91 (104)
2 1jo0_A Hypothetical protein HI 100.0 1.5E-28 5.2E-33 204.9 13.0 89 138-227 2-90 (98)
3 3p04_A Uncharacterized BCR; SE 32.4 1.9E+02 0.0063 23.5 7.7 56 171-228 19-77 (87)
4 3ka5_A Ribosome-associated pro 32.2 62 0.0021 25.2 4.6 47 181-228 1-50 (65)
5 3sbx_A Putative uncharacterize 27.9 73 0.0025 28.8 5.0 35 145-180 129-163 (189)
6 2h9u_A DNA/RNA-binding protein 24.8 2.8E+02 0.0095 22.9 7.6 66 155-220 6-74 (102)
7 1uii_A Geminin; human, DNA rep 23.5 1.2E+02 0.0042 24.8 5.1 32 242-275 36-67 (83)
8 2lw1_A ABC transporter ATP-bin 23.2 1E+02 0.0034 24.4 4.5 33 253-285 21-53 (89)
9 2pnv_A Small conductance calci 22.1 92 0.0032 22.6 3.7 25 254-278 16-40 (43)
10 3k2t_A LMO2511 protein; lister 21.8 66 0.0023 24.3 3.0 45 183-228 3-50 (57)
11 3lup_A DEGV family protein; PS 21.1 3.5E+02 0.012 25.3 8.5 61 147-208 182-256 (285)
12 3c1y_A DNA integrity scanning 20.8 1.4E+02 0.0047 30.2 5.9 33 192-224 125-158 (377)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=6.7e-29 Score=209.48 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHhhcccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 015090 138 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 217 (413)
Q Consensus 138 ~LT~eERk~LRKlAhkLKPVV~IGKrGVTdgVIeeIh~AwK~HELVKVKvk~~s~ed~keiAeeLee~TGGeLVQviiG~ 217 (413)
|||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~-IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV-IGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999996 699
Q ss_pred EEEEEeCCCCCCC
Q 015090 218 TIIMYRGKNYAQP 230 (413)
Q Consensus 218 tIILYRGKNY~rP 230 (413)
++||||++. ..|
T Consensus 80 ~~VLYR~~~-~~~ 91 (104)
T 1rq8_A 80 MIVIYRESK-ENK 91 (104)
T ss_dssp EEEEEECCC-SCC
T ss_pred EEEEEeCCC-CCC
Confidence 999999976 344
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=1.5e-28 Score=204.90 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHhhcccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 015090 138 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 217 (413)
Q Consensus 138 ~LT~eERk~LRKlAhkLKPVV~IGKrGVTdgVIeeIh~AwK~HELVKVKvk~~s~ed~keiAeeLee~TGGeLVQviiG~ 217 (413)
.||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~-IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT-IGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999996 699
Q ss_pred EEEEEeCCCC
Q 015090 218 TIIMYRGKNY 227 (413)
Q Consensus 218 tIILYRGKNY 227 (413)
++||||++..
T Consensus 81 ~~vLyR~~~~ 90 (98)
T 1jo0_A 81 ILVLYRPSEE 90 (98)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEccCCC
Confidence 9999998743
No 3
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=32.43 E-value=1.9e+02 Score=23.47 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHH---HhCCEEEEEeeCcEEEEEeCCCCC
Q 015090 171 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYA 228 (413)
Q Consensus 171 eeIh~AwK~HELVKVKvk~~s~ed~keiAeeLee---~TGGeLVQviiG~tIILYRGKNY~ 228 (413)
.+|-++|+....|=|.+...+.++.+.+.+.++- ..+|.+.. +|..+.|+=|+|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeE
Confidence 5799999999999999999999999999999876 56999885 47888888887764
No 4
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=32.19 E-value=62 Score=25.22 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=33.1
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEe---eCcEEEEEeCCCCC
Q 015090 181 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 228 (413)
Q Consensus 181 ELVKVKvk~~s~ed~keiAeeLee~TGGeLVQvi---iG~tIILYRGKNY~ 228 (413)
++|+.+--...+-.+.+++.+++-.-.--+| .. -|.+-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~v-F~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFV-FQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEE-EEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEE-EEeCCCCCEEEEEEeCCCC
Confidence 4667776666667788888888776444444 43 38899999988654
No 5
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.93 E-value=73 Score=28.80 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHhhcccCCCeeeeCCCCCcHHHHHHHHHHHHhC
Q 015090 145 FYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKH 180 (413)
Q Consensus 145 k~LRKlAhkLKPVV~IGKrGVTdgVIeeIh~AwK~H 180 (413)
--+..+|.+-+|++.+|.+|.++.+++-++ ++-..
T Consensus 129 lt~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~ 163 (189)
T 3sbx_A 129 WTEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADT 163 (189)
T ss_dssp HHHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHT
T ss_pred HHHHHhcccCCCEEEecCCccchHHHHHHH-HHHHC
Confidence 345677888899999999999999998886 44433
No 6
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=24.77 E-value=2.8e+02 Score=22.93 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCeeeeCCCCCcHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCEEEEE-eeCcEEE
Q 015090 155 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLEI-HEENTII 220 (413)
Q Consensus 155 KPVV~IGKrGVTdgVIeeIh~AwK~-HELVKVKvk~~s~ed~keiAeeLee~T-GGeLVQv-iiG~tII 220 (413)
...|.||+.|++.-|...+...|.. +.=|.|+-.+..-...-.+|+.|.+.. +|.-||. .+|...|
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i 74 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEI 74 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEE
Confidence 4789999999988888887455543 677888888877777888999999999 6755453 3565554
No 7
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.55 E-value=1.2e+02 Score=24.81 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHH
Q 015090 242 SRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 275 (413)
Q Consensus 242 tKrkAL~rS~~~Qr~eslk~~i~~le~~ie~l~~ 275 (413)
.||+||.-++..- +.|..-|..++.+|..|+.
T Consensus 36 ~RR~AL~eaL~EN--~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 36 KRRKALYEALKEN--EKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4889999998763 3334444444444444444
No 8
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.24 E-value=1e+02 Score=24.39 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=27.2
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHhhhccccc
Q 015090 253 RDGLRAVKKYIPKLEQELELLRAQAETRSENRS 285 (413)
Q Consensus 253 ~Qr~eslk~~i~~le~~ie~l~~~~~~~~~~~~ 285 (413)
...++.|-.-|..||.+|..|..+|...+-+.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~ 53 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence 344788999999999999999999987765543
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.13 E-value=92 Score=22.56 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHh
Q 015090 254 DGLRAVKKYIPKLEQELELLRAQAE 278 (413)
Q Consensus 254 Qr~eslk~~i~~le~~ie~l~~~~~ 278 (413)
-|.+.|...|..||..++.|..++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998774
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.75 E-value=66 Score=24.27 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCEEEEEe---eCcEEEEEeCCCCC
Q 015090 183 LKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 228 (413)
Q Consensus 183 VKVKvk~~s~ed~keiAeeLee~TGGeLVQvi---iG~tIILYRGKNY~ 228 (413)
|+.+--...+-.+.+++.+++-.-.--+| .+ -|.+-|+||.++..
T Consensus 3 vr~K~~~~kpmsveEAv~qmel~gh~F~v-F~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 3 VRTKQFSLKPMDSEEAVLQMNLLGHSFYV-YTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCC---CCBCHHHHHHHHHHHTCSEEE-EEBSSSCCEEEEEECTTSC
T ss_pred EEEEeccCCCCCHHHHHHHHHhCCCcEEE-EEcCCCCCEEEEEEeCCCC
Confidence 44444334455677788888766444444 43 38899999987653
No 11
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=21.11 E-value=3.5e+02 Score=25.30 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=41.6
Q ss_pred HHhhcccCCCeeeeCCCCC-------------cHHHHHHHHHHHHhCCeeeEEe-cCCCHHHHHHHHHHHHHHhCC
Q 015090 147 FLKMGRKCKNYVPVGRRGI-------------YQGVILNMHLHWKKHQTLKVIV-KTFSAEEVKEIAAELARLTGG 208 (413)
Q Consensus 147 LRKlAhkLKPVV~IGKrGV-------------TdgVIeeIh~AwK~HELVKVKv-k~~s~ed~keiAeeLee~TGG 208 (413)
+-.-.+++||++.+-.+|. ...+++.+........ .+|.+ ..++.++..++.+.|.+..+.
T Consensus 182 ~ig~lL~IKPIl~~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~~~~-~~v~i~h~~~~e~a~~l~~~l~~~~~~ 256 (285)
T 3lup_A 182 IIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGE-YDIAIIHSRAQDKAEQLYNLLAKAGLK 256 (285)
T ss_dssp HHHHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSC-EEEEEEESSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHhhCcEEEEEEccCceEEEeeecCCHHHHHHHHHHHHHHhhcCCC-cEEEEEeCCCHHHHHHHHHHHHhhCCC
Confidence 3344578999999975663 3455666666555444 34544 567888899999999887664
No 12
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=20.78 E-value=1.4e+02 Score=30.17 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEe-eCcEEEEEeC
Q 015090 192 AEEVKEIAAELARLTGGIVLEIH-EENTIIMYRG 224 (413)
Q Consensus 192 ~ed~keiAeeLee~TGGeLVQvi-iG~tIILYRG 224 (413)
...+..+|.-|.+.|+|.+|-|. ..++|-+|++
T Consensus 125 lGtRHRAA~gise~tdaivIvVSEetG~Isl~~~ 158 (377)
T 3c1y_A 125 TGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYK 158 (377)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSCCCEEEECS
T ss_pred CcHHHHHHHHHHHhcCCEEEEEEccCCcEEEEEC
Confidence 45789999999999999999653 2345666654
Done!