Your job contains 1 sequence.
>015091
MMQPAPGAVPPPPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWATQA
AAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG
QIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGD
LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF
CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLR
ELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ
AQPDPNQWNAGYYGYAQGYENYGYAAAAPQDPSMYYGGYPGYGNYQQPQQPQQ
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015091
(413 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 1210 4.4e-123 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 1209 5.7e-123 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 1124 5.8e-114 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 1082 1.6e-109 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 1016 1.6e-102 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 990 9.1e-100 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 971 9.4e-98 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 952 9.7e-96 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 950 1.6e-95 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 935 6.1e-94 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 458 4.7e-68 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 448 1.8e-66 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 562 2.1e-54 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 542 2.7e-52 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 258 1.1e-43 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 257 3.7e-41 2
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 400 3.6e-40 2
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 400 3.6e-40 2
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 400 3.6e-40 2
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 399 4.6e-40 2
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 398 5.8e-40 2
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 396 9.4e-40 2
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 395 1.2e-39 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 291 3.4e-37 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 391 2.7e-36 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 273 1.4e-35 2
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 369 5.8e-34 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 359 6.7e-33 1
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 353 2.9e-32 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 352 3.7e-32 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 349 7.7e-32 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 347 1.3e-31 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 346 1.6e-31 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 346 1.6e-31 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 346 1.6e-31 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 346 1.6e-31 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 345 2.0e-31 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 345 2.0e-31 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 345 2.0e-31 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 345 2.0e-31 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 343 3.3e-31 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 343 3.3e-31 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 341 5.4e-31 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 337 1.4e-30 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 334 3.0e-30 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 332 4.9e-30 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 331 6.2e-30 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 331 6.2e-30 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 329 1.0e-29 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 327 1.6e-29 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 325 2.7e-29 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 325 2.7e-29 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 325 2.7e-29 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 324 3.4e-29 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 316 2.4e-28 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 312 6.4e-28 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 231 1.9e-27 2
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 242 5.2e-26 2
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 291 1.1e-25 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 279 2.0e-24 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 278 2.6e-24 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 220 2.6e-24 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 280 1.3e-23 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 269 1.8e-22 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 205 1.9e-22 2
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 257 3.2e-22 2
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 257 2.3e-21 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 257 2.9e-21 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 256 4.6e-21 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 247 7.0e-21 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 254 7.6e-21 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 246 9.1e-21 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 245 1.2e-20 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 245 1.2e-20 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 187 1.2e-20 2
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 243 1.3e-20 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 249 2.7e-20 1
POMBASE|SPBC1289.12 - symbol:usp109 "U1 snRNP-associated ... 240 3.2e-20 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 197 4.0e-20 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 197 4.0e-20 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 204 4.3e-20 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 245 7.1e-20 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 245 7.9e-20 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 235 1.4e-19 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 241 1.8e-19 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 235 2.2e-19 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 235 2.2e-19 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 240 2.7e-19 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 235 3.0e-19 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 238 4.1e-19 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 238 4.3e-19 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 234 5.9e-19 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 231 1.4e-18 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 232 2.1e-18 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 231 4.7e-18 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 230 9.8e-18 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 192 1.1e-17 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 230 1.2e-17 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 230 1.2e-17 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 230 1.2e-17 1
WARNING: Descriptions of 1110 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 229/318 (72%), Positives = 260/318 (81%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ KVIRNKQTGQ EGYGF+EF S A AE +
Sbjct: 82 EVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETI 141
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MPN EQNFR+NWAS GAGE+RDD+ +HTIFVGDLAADVTDY+LQETF++ Y
Sbjct: 142 LQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYS 201
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV DR+TGR+KGYGFV+F DESEQLRAMTEMNGV CSTRPMRIGPA NKK V
Sbjct: 202 SVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGT 261
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
Q KA+YQN Q Q + DPNNTT+FVG LD V +EHLR++FS YG+LVHVKI AGKR
Sbjct: 262 PQ---KATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKR 318
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG---YYGYA 376
CGFVQF R+ AE+AL LNGTQLGGQ+IRLSWGRSPS+KQ D QW YYGY
Sbjct: 319 CGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQT--DQTQWGGSGGAYYGYG 376
Query: 377 QGYENYGYAAAAPQDPSM 394
QGYE YGYA A QDP+M
Sbjct: 377 QGYEAYGYAPPA-QDPNM 393
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 233/317 (73%), Positives = 267/317 (84%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQTGQ+EGYGFIEF S A AERV
Sbjct: 60 EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Query: 140 LQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
LQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIFVGDLAADVTDY+L ETFRA Y
Sbjct: 120 LQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASY 179
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
PS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMNGV CSTRPMRIGPA +KK V+
Sbjct: 180 PSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
Query: 259 GQQQYPKASYQNSQVA-QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
GQ+ SYQ+S +D+DPNNTTVFVG LD+ VTD+HL+ +FSQYG++VHVKIPAG
Sbjct: 240 GQRD----SYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG 295
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYG-YA 376
KRCGFVQF+++SCAEEALRMLNG QLGG +RLSWGRSPSNKQ+ DP+Q+ YYG Y
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSG-DPSQF---YYGGYG 351
Query: 377 QGYENYGYAAAAPQDPS 393
QG E YGY PQDP+
Sbjct: 352 QGQEQYGYTM--PQDPN 366
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 119/258 (46%), Positives = 146/258 (56%)
Query: 152 EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
+Q FRLNWAS +G+KRDD+PD+TIFVGDLAADVTDY+L ETFRA YPS KGAKVVIDR+
Sbjct: 133 DQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRV 192
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASY--- 268
TGRTKGYGFVRF DESEQ+RAMTEMNGV CSTRPMRIGPA +KK V+GQ+ ++S
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGV 252
Query: 269 ------QNSQV-------AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
N+ V + +DD N G + + R F Q+ + +
Sbjct: 253 TTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAE-E 311
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ-AQPDPNQWNAGYYG 374
A + VQ + R + Q G + G +Q P NA YYG
Sbjct: 312 ALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNA-YYG 370
Query: 375 YAQGYENYGYAAAAPQDP 392
GY GY+ Q P
Sbjct: 371 ---GYSGGGYSGGYQQTP 385
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 217/319 (68%), Positives = 252/319 (78%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GEIR+LWIGDLQ WMDE YL F TGE A KVIRNKQ G EGYGFIEF++ A AER
Sbjct: 77 GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGE+R + P+HT+FVGDLA DVTD+ML ETF+A
Sbjct: 137 NLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV DR TGR+KGYGFVRF DESEQ+RAMTEMNG +CS+RPMR GPA NKK +
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
+ Q P ASYQN+Q + DP NTT+FVG +D VT++ L+ +F Q+G+LVHVKIPAG
Sbjct: 257 TMQ---P-ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG 312
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG--YYGY 375
KRCGFVQ+A+R+CAE+AL +LNGTQLGGQ+IRLSWGRSPSNKQ QPD Q+ G YYGY
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGY 372
Query: 376 A-QGYENYGYAAAAPQDPS 393
QGYE YGYA PQDP+
Sbjct: 373 PPQGYEAYGYAPP-PQDPN 390
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 212/320 (66%), Positives = 252/320 (78%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFIEF+S + AERV
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVTDYMLQETFRAR 197
LQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VTDYML +TF+
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPMRIGPA NK +
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 258 SGQQQYPKASYQNSQVAQS-DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
Q P A YQN+Q A + D+DPNNTT+FVG LD+ VTD+ L+ +F Q+G+L+HVKIP
Sbjct: 238 PMQ---P-AMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP 293
Query: 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG-YYGY 375
GKRCGFVQ+A+++ AE AL +LNGTQLGGQ+IRLSWGRSP NKQ+ D QWN G YYGY
Sbjct: 294 GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP-NKQS--DQAQWNGGGYYGY 350
Query: 376 A-QGYENYGYAAAAP-QDPS 393
Q YGYAA P QDP+
Sbjct: 351 PPQPQGGYGYAAQPPTQDPN 370
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 200/325 (61%), Positives = 247/325 (76%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF + A AE+VLQ
Sbjct: 84 KTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARYPS 200
++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD ML++TF +RYPS
Sbjct: 144 SYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPS 203
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG AT KK S
Sbjct: 204 LKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKP-SAH 262
Query: 261 QQYPKAS------YQNSQVA----QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 310
+QY + Y ++ A QSD D +NTT+FVG LDS VTDE LR+ F+Q+G++V
Sbjct: 263 EQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVV 322
Query: 311 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP-NQWN 369
VKIPAGK CGFVQF+DRS A+EA++ L+G +G Q +RLSWGRSP+NKQ + D +QWN
Sbjct: 323 SVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWN 382
Query: 370 AGYYGYAQGYENYGYAAAAPQDPSM 394
GY G Q Y YGY A+ QD M
Sbjct: 383 GGYNG-RQNYGGYGYGASQNQDSGM 406
Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK-- 318
QQ K +Q+ S +D N T+++G+L + + +L FSQ G+++ VKI K
Sbjct: 64 QQQQKMQQSPTQIQSSSED--NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQT 121
Query: 319 ----RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSW-GRSPSNKQAQ 362
R GFV+F + AE+ L+ NGT + Q RL+W G S K+A+
Sbjct: 122 GQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAE 172
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 197/329 (59%), Positives = 236/329 (71%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 QQQY-PKASYQ-----------NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307
QQQY KA Y + VA + D TT+ V NLD VT+E L++ FSQ G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 308 QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ--AQPDP 365
++++VKIPA K G+VQF R AEEA++ + G +G Q +R+SW ++P Q DP
Sbjct: 262 EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADP 321
Query: 366 NQWNAGYYGYAQGYENYGYAAAAPQDPSM 394
NQWN GYYGY QGY+ Y Y A QDPS+
Sbjct: 322 NQWN-GYYGYGQGYDAYAYGAT--QDPSV 347
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 196/323 (60%), Positives = 238/323 (73%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 258 S-GQQQYPKA----SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
+ GQQ +A + SD + NN+T+FVG LD+ VT+E L + FS +G++V V
Sbjct: 297 AYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP-NQWNAG 371
KIP GK CGFVQFA+R AEEA+ LNGT +G +RLSWGRSP NKQ + D NQWN G
Sbjct: 357 KIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGG 415
Query: 372 YYGYAQGYENYGYAAAAPQDPSM 394
Y QGY N GYA QD +M
Sbjct: 416 Y-SRGQGYNN-GYAN---QDSNM 433
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 186/320 (58%), Positives = 233/320 (72%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA AE V
Sbjct: 106 DVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEV 165
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L ETF R
Sbjct: 166 LQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDR 225
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT K+ +
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAI 285
Query: 258 SGQQQYPKASY-------QNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307
+ QQQ+ + N + +QSD + N T+FVG +D V DE LR+ FSQ+G
Sbjct: 286 ANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFG 345
Query: 308 QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 367
++V VKIP GK CGFVQFADR AE+A+ LNGT +G +RLSWGRSP NKQ + D Q
Sbjct: 346 EVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQ 404
Query: 368 -WNAGYYGYAQGYENYG-YA 385
WN GY GY N G YA
Sbjct: 405 QWNGGY-SRGHGYNNGGGYA 423
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 192/322 (59%), Positives = 233/322 (72%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF S A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
Query: 255 KTVSGQQQYPKASYQNSQV-AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313
KT +G QQ + Y S +S+ D NTT+FVG LDS VTDE L++ FS++G++V VK
Sbjct: 280 KT-NGYQQ--QGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVK 336
Query: 314 IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGY 372
IP GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW Y
Sbjct: 337 IPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPY 396
Query: 373 YGYAQGYENYGYAAAAPQDPSM 394
YG Q Y YGY P DP M
Sbjct: 397 YG-GQFYNGYGYMVPQP-DPRM 416
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 188/322 (58%), Positives = 233/322 (72%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSGQQQYPKASYQ-NSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313
KT +G QQ + Y N + + + D NTT+FVG LDS VTDE L++ F+++G++V VK
Sbjct: 278 KT-NGYQQ--QGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 314 IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD-PNQWNAGY 372
IP GK CGFVQF +R AEEAL LNGT +G Q +RLSWGR+P+NKQ + NQW Y
Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPY 394
Query: 373 YGYAQGYENYGYAAAAPQDPSM 394
YG Q Y YGY P DP M
Sbjct: 395 YG-GQFYNGYGYMVPQP-DPRM 414
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 458 (166.3 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 92/184 (50%), Positives = 131/184 (71%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+TLW+G+L+ WMDE ++ ++ GE V VKVIR++Q+G GY F+EF S A + L
Sbjct: 47 KTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNA-GYCFVEFPSSEAATKAL 105
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAG--EKRDDT-PDHTIFVGDLAADVTDYMLQETFRAR 197
NG+P+PN ++ F+LNWAS G G ++RD+ P+++IFVGDL +V +++L F+AR
Sbjct: 106 G-LNGSPVPNSQRVFKLNWAS-GGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQAR 163
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+PS K AK++ D +TG+++GYGFVRF DES+Q RA+ EM GV+C RPMRI AT KT
Sbjct: 164 FPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTAT-PKTR 222
Query: 258 SGQQ 261
S QQ
Sbjct: 223 SHQQ 226
Score = 251 (93.4 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 50/115 (43%), Positives = 63/115 (54%)
Query: 264 PKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
P ++ N Q DPNNTTVFVG L VT++ LR F +G + +VKIP GK CGF
Sbjct: 264 PNTAFNNPMQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGF 323
Query: 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK------QAQPDPNQWNAG 371
VQF R AE A+ + G +G +RLSWGRS +N + P P W G
Sbjct: 324 VQFVHRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGVGTPYRPAPPPPHWGGG 378
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 448 (162.8 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 87/181 (48%), Positives = 125/181 (69%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQ 141
TLW+G+L+ W+DE ++ + GE V VK+IR+K +G+ GY F++F S A A + L
Sbjct: 66 TLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL- 124
Query: 142 TFNGTPMPNGEQNFRLNWASFG--AGEKRDDT-PDHTIFVGDLAADVTDYMLQETFRARY 198
+ NGTPMPN + F+LNWA+ G A RDD P+++IFVGDL +V +Y+L F++R+
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
PS K AK++ D ++G ++GYGFVRF DE++Q RA++EM GV+C RPMRI AT K
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKGP 244
Query: 259 G 259
G
Sbjct: 245 G 245
Score = 246 (91.7 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 47/102 (46%), Positives = 58/102 (56%)
Query: 264 PKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFV 323
P Y Q DPNNTTVFVG L VT++ LR F +G++ +VKIP GK CGFV
Sbjct: 267 PMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFV 326
Query: 324 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP 365
QF R AE A+ + G +G +RLSWGRS +N P
Sbjct: 327 QFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGPAGSP 368
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 123/294 (41%), Positives = 168/294 (57%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 143 FNGTPMPNGEQNFRLNWASFGA-GEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P+P F+LNWAS G EK +++IFVGDL+ +V ++ + F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK----- 255
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVF 272
Query: 256 ---TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
V P Y +Q D N+TVFVG L V++E L+ LF +G++V+V
Sbjct: 273 SPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYV 332
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 366
KIP GK CGFVQF +R AE A+ L G LG IRLSWGR+ N A P N
Sbjct: 333 KIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN-QNPIAAPALN 385
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 54/219 (24%), Positives = 97/219 (44%)
Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
M + E N +++G+ + T+++G+L VT+ +Q+ + + K K++
Sbjct: 67 MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKAS 267
+R TG GY FV F E AM+ MN +P+ P TN +
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMS-MNN-----KPI---PGTNH--LFKLNWASGGG 174
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI---P---AGKRC 320
+ ++++ + ++FVG+L V + + LF S+Y KI P +
Sbjct: 175 LREKSISKASE----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
GFV+F D + + AL + G G + IR+ +P +K
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLA-TPKSK 268
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 116/285 (40%), Positives = 168/285 (58%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VS----GQQQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 310
S S N Q Q DP NTTVFVG L S ++++ L+ F +G+++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 311 HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
++KIP GK CGFVQ++++S AE+A+ + G +G +IRL+WG +
Sbjct: 325 NIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 258 (95.9 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 75/231 (32%), Positives = 120/231 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNK--QTGQI--------EGYGFIEFIS 132
L++GDL D+ + +A GE + V+++ N G +GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 133 RAGAERVLQTFNGTPMPN-GEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADV 185
A L NG +PN + +LNWA+ + + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
T+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 246 MRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTD 296
+++GP SGQQQ+ + ++ + S ++ N + F+ S +++
Sbjct: 235 IKVGPT------SGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSN 279
Score = 233 (87.1 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 42/77 (54%), Positives = 54/77 (70%)
Query: 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 338
DPNNTTVF+G L S+VT++ LR F +G +V+VKIP GK CGFVQ+ DR AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 339 NGTQLGGQNIRLSWGRS 355
G + +RLSWGRS
Sbjct: 369 QGFPIANSRVRLSWGRS 385
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQ 275
+GY FV F + A+ + NG+ P NKK + + +SY NS +
Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFP-------NKKL---KLNWATSSYSNSNNSL 154
Query: 276 SD-DDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKIP----AG--KRCGFVQFAD 327
++ NN ++FVG+L VT+ L ELF ++Y H KI G K GFV+F +
Sbjct: 155 NNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214
Query: 328 RSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 369
+ AL + G L G+ I++ G + +Q N +N
Sbjct: 215 SDEQQLALSEMQGVFLNGRAIKV--GPTSGQQQHVSGNNDYN 254
Score = 71 (30.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + E+ L F + K++ ++ TG +GYGF++F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 142 TFNGTPMPNG 151
G + NG
Sbjct: 224 EMQGVFL-NG 232
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 257 (95.5 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 66/188 (35%), Positives = 102/188 (54%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPN-------GEQN------FRLNWASFGAGEKRD- 169
GY F+EF ++ A+ L + N TP+PN + N FRLNWAS GA +
Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSI 186
Query: 170 -DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
TP+ ++FVGDL+ T+ L F+ R+ S K +V+ D LTG ++ +GFVRFGDE E
Sbjct: 187 PSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDE 246
Query: 229 QLRAMTEMNGVFCSTRPMRIGPAT--NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
+ RA+ EM+G + R +R+ AT N + Q+Q + Q Q D + NN +
Sbjct: 247 RRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLL 306
Query: 287 VGNLDSIV 294
+ ++++
Sbjct: 307 IKTANNLI 314
Score = 215 (80.7 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 46/100 (46%), Positives = 61/100 (61%)
Query: 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRML 338
DP NTTVFVG L T+ LR LF +G +++V+IP GK CGFV+F R AE +++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 339 NGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 378
G +GG IRLSWGR PS+ A+ + A Y + G
Sbjct: 416 QGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNG 454
Score = 100 (40.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 39/159 (24%), Positives = 71/159 (44%)
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQS 276
GY FV F + + A++ +N + P P TN +T ++ + ++ + QS
Sbjct: 129 GYCFVEFETQKDAKFALS-LNA---TPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQS 184
Query: 277 D-DDPNNTTVFVGNLDSIVTDEHLRELF-SQYGQLVHVKI---P--AGKRC-GFVQFADR 328
++FVG+L T+ L LF +++ + V++ P RC GFV+F D
Sbjct: 185 SIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDE 244
Query: 329 SCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 367
AL ++G G+ +R+++ +N Q Q
Sbjct: 245 DERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQ 283
Score = 73 (30.8 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 25/84 (29%), Positives = 34/84 (40%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF---ISRAGAER 138
RTLW+GDL DE + ++ + V VK+IR K+ I S AE
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 139 VLQTFNGTPMPNGEQNFRLNWASF 162
N T + Q +N SF
Sbjct: 94 QQSASNSTDQLDNSQMININGISF 117
Score = 57 (25.1 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 83 TLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+L++GDL E L + F V V+V+ + TG +GF+ F R L
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 142 TFNG 145
+G
Sbjct: 253 EMSG 256
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 400 (145.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 88/198 (44%), Positives = 129/198 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 149 (57.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 62/220 (28%), Positives = 100/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 400 (145.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 88/198 (44%), Positives = 129/198 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 149 (57.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 62/220 (28%), Positives = 100/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 400 (145.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 88/198 (44%), Positives = 129/198 (65%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 149 (57.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 62/220 (28%), Positives = 100/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 399 (145.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 87/198 (43%), Positives = 128/198 (64%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 149 (57.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 62/220 (28%), Positives = 100/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGT-QLGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 398 (145.2 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 88/198 (44%), Positives = 128/198 (64%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 146 (56.5 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 62/220 (28%), Positives = 100/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 87/198 (43%), Positives = 128/198 (64%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE+V +VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL ADV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D+ G +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K
Sbjct: 122 SCRGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKANRM 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + +Y +Q Q
Sbjct: 181 KPTEYNQMYNYNYNQYYQ 198
Score = 156 (60.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 62/219 (28%), Positives = 98/219 (44%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L + V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTADV 107
Query: 295 TDEHLRELFSQ-Y-----GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y G++V + K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDQAGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167
Query: 348 IRLSWGRSPSNKQAQPDPNQ-WNAGYYGYAQGYENYGYA 385
+RLS +N+ + NQ +N Y Y Q Y +Y YA
Sbjct: 168 VRLSVAIPKANRMKPTEYNQMYNYNYNQYYQQYHSY-YA 205
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 395 (144.1 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 88/198 (44%), Positives = 127/198 (64%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKTVS 258
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 259 GQQQYPKA-SYQNSQVAQ 275
+Y + SY +Q Q
Sbjct: 181 KPVEYSQMYSYSYNQYYQ 198
Score = 145 (56.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 63/220 (28%), Positives = 99/220 (45%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + + F + K++ +RLTG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
++NG +P+ G K+ Y K Q D+ P + +FVG+L V
Sbjct: 64 KING-----KPLP-GATPAKRFKLNYATYGK---------QPDNSPEYS-LFVGDLTPDV 107
Query: 295 TDEHLRELFSQ-YGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRMLNGTQ-LGGQN 347
D L E F + Y K+ P G K GFV+F D + AL G LG +
Sbjct: 108 DDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKP 167
Query: 348 IRLSWGRSPSNKQAQP-DPNQ-WNAGYYGYAQGYENYGYA 385
+RLS P + +P + +Q ++ Y Y Q Y+NY YA
Sbjct: 168 VRLSVA-IPKASRVKPVEYSQMYSYSYNQYYQQYQNY-YA 205
Score = 44 (20.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 367 QW----NAGYYGYAQGYENYGYAAAAPQ 390
QW N G Y Y+ Y YGY + Q
Sbjct: 206 QWGYDQNTGSYSYS--YPQYGYTQSTMQ 231
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 291 (107.5 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 70/188 (37%), Positives = 104/188 (55%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVL 140
R L++G L + E L F TG V++VK+I +K + YGF+EF AER +
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAM 149
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
QT NG + E R+NWA ++DT +H IFVGDL+ +V D +L + F A +
Sbjct: 150 QTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-FG 206
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S A+V+ D TGR++GYGFV F + ++ +A+T M+G + +R +R A K S
Sbjct: 207 SVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSI 266
Query: 260 QQQYPKAS 267
QQ A+
Sbjct: 267 SQQQAMAA 274
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 60/202 (29%), Positives = 95/202 (47%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMT 234
++VG L VT+ +L++ F K++ D+ + YGFV F D RAM
Sbjct: 92 LYVGGLDPRVTEDILKQIFETT-GHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+NG +R+ A YQ S A +D N+ +FVG+L + V
Sbjct: 151 TLNGRRIHQSEIRVNWA----------------YQ-SNTANKEDTSNHFHIFVGDLSNEV 193
Query: 295 TDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNI 348
DE L + FS +G + ++ G+ GFV F +R+ AE+AL ++G LG + I
Sbjct: 194 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Query: 349 RLSWGRSPSNKQAQPDPNQWNA 370
R +W +N++ QP +Q A
Sbjct: 254 RCNW----ANQKGQPSISQQQA 271
Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 38/135 (28%), Positives = 66/135 (48%)
Query: 242 STRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 301
+T P+ P +SG P ++ V ++ +PN ++VG LD VT++ L++
Sbjct: 54 NTNPI---PTAITTPMSGNMVSPTSA--GGYVRRAAPEPNKRALYVGGLDPRVTEDILKQ 108
Query: 302 LFSQYGQLVHVKI-P------AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354
+F G ++ VKI P G GFV+F D AE A++ LNG ++ IR++W
Sbjct: 109 IFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAY 168
Query: 355 SPSNKQAQPDPNQWN 369
+ + N ++
Sbjct: 169 QSNTANKEDTSNHFH 183
Score = 132 (51.5 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 35/143 (24%), Positives = 58/143 (40%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T G +P Q+ + TT +VGNL T + LF +G ++ ++
Sbjct: 281 TPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQ 340
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS-PSNKQAQPDPNQWNAGYYG 374
A + F++ A A+ LNG + G+ ++ SWG+ P Q P Q +
Sbjct: 341 ADRGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSWGKDRPPTGQFDNFPGQQANSPFA 400
Query: 375 YAQG--YENYGYAAA--APQDPS 393
+ G + YG PQ P+
Sbjct: 401 SSPGPYFPQYGGPGGPMTPQGPA 423
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 101/307 (32%), Positives = 161/307 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E RTL++G+L + E ++ T F G V KVI + G + Y F+EF A +
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQA 100
Query: 140 LQTFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
LQT N + + E ++NWA G + + DT H +FVGDL+++V + L+E F+
Sbjct: 101 LQTMNKRLLLDREM--KVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP- 157
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ AKV+ D T ++KGYGFV + E RA+ +MNG + R +R AT K
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP-- 215
Query: 258 SGQQQYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
G Q+ P + S + +NT+V+VGN+ S+ DE +R+ F+ +G++ V+I
Sbjct: 216 -GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFK 273
Query: 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYA 376
+ FV+F ++ A +A+ +N +GGQ +R SWG++ D + G YGY
Sbjct: 274 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTG-------DTGKTPGGSYGYG 326
Query: 377 QGYENYG 383
G + G
Sbjct: 327 YGNSSSG 333
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 273 (101.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 69/184 (37%), Positives = 100/184 (54%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G L + E L F TG V VK+I +K YGF+E+ A+R +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN-YGFVEYDDPGAADRAMQ 143
Query: 142 TFNGTPMPNGEQNFRLNWASFGA-GEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYP 199
T NG + E R+NWA A ++DT +H IFVGDL+ +V D +L + F +
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSV-FG 200
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS- 258
S A+V+ D TGR++GYGFV F D S+ +A++ M+G + +R +R A K S
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 259 GQQQ 262
QQQ
Sbjct: 261 AQQQ 264
Score = 197 (74.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 65/231 (28%), Positives = 106/231 (45%)
Query: 146 TPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205
+PM G+Q+ ++ + ++VG L A VT+ +L++ F + K
Sbjct: 57 SPMGGGDQSALMSPGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETT-GHVQNVK 115
Query: 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
++ D+ + YGFV + D RAM +NG +R+ A
Sbjct: 116 IIPDK-NAKGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWA-------------- 160
Query: 266 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR-- 319
YQ + A +D N+ +FVG+L + V DE L + FS +G + ++ G+
Sbjct: 161 --YQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRG 218
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNA 370
GFV F DRS AE+AL ++G LG + IR +W +N++ QP Q A
Sbjct: 219 YGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNW----ANQKGQPSIAQQQA 265
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/128 (28%), Positives = 63/128 (49%)
Query: 242 STRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRE 301
+T P+ P + G Q S + ++ +PN ++VG LD+ VT++ LR+
Sbjct: 47 NTNPI---PTAITSPMGGGDQSALMSPGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQ 103
Query: 302 LFSQYGQLVHVKI-P----AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
+F G + +VKI P G GFV++ D A+ A++ LNG ++ IR++W
Sbjct: 104 IFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQA 163
Query: 357 SNKQAQPD 364
+ + D
Sbjct: 164 ATSATKED 171
Score = 137 (53.3 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 38/145 (26%), Positives = 66/145 (45%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T G +P Q+ ++ + TT +VGNL T + LF +G +V +
Sbjct: 275 TPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQ 334
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR--SPSNKQAQPDPNQ----WN 369
A + F++ A +A+ LNG + G+ ++ SWG+ + +N Q DP+Q +
Sbjct: 335 ADRGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNSTNPQGNFDPSQAFSPQS 394
Query: 370 AGYYGY----AQGYENYGYAAAAPQ 390
AG G+ + + YG + PQ
Sbjct: 395 AGGPGFPGTPSTYFPQYGGQFSGPQ 419
Score = 41 (19.5 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 340 GTQLGGQ--NIRLSWGRSPSN-KQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQ 390
G Q G N + +SP+ +Q P N +AG YG Q N +++ PQ
Sbjct: 412 GGQFSGPQGNFGPNSAQSPAGFQQPMPFSNPPSAGGYGRGQQAPNAQWSS--PQ 463
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 92/309 (29%), Positives = 153/309 (49%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP 180
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
Q + + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--AQPDPNQWN--AGYY 373
FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + Y
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY 300
Query: 374 GYAQGYENY 382
G Q Y Y
Sbjct: 301 GNPQQYGQY 309
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 52/196 (26%), Positives = 88/196 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K++ + + Y FV F + +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q+ K + + V D P TT
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT---TPSSQK---KDTSNHFHVFVGDLSPEITTE--- 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++ S ++ S + + K GFV F ++ AE A+ + G LGG+ I
Sbjct: 112 DIKSAFAP--FGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Query: 349 RLSWG--RSPSNKQAQ 362
R +W + P+ K Q
Sbjct: 169 RTNWATRKPPAPKSTQ 184
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG----FVQFADRSCAE 332
+DD T++VGNL VT+ + +LFSQ G K+ FV+F + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 93/314 (29%), Positives = 153/314 (48%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G+ RTL++G+L + E + F+ G + K+I + T + Y F+EF A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSN-DPYCFVEFYEHRDAAA 63
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 64 ALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF-APF 120
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP 180
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
Q + + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPS-NKQAQP------DPNQWN- 369
FV+F+ A A+ +NGT + G ++ WG+ SP K Q D +QW
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVIRFFVDYSQWGQ 300
Query: 370 -AGYYGYAQGYENY 382
+ YG Q Y Y
Sbjct: 301 WSQVYGNPQQYGQY 314
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 52/196 (26%), Positives = 88/196 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K++ + + Y FV F + +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q+ K + + V D P TT
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWAT---TPSSQK---KDTSNHFHVFVGDLSPEITTE--- 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++ S ++ S + + K GFV F ++ AE A+ + G LGG+ I
Sbjct: 112 DIKSAFAP--FGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Query: 349 RLSWG--RSPSNKQAQ 362
R +W + P+ K Q
Sbjct: 169 RTNWATRKPPAPKSTQ 184
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG----FVQFADRSCAE 332
+DD T++VGNL VT+ + +LFSQ G K+ FV+F + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/205 (37%), Positives = 117/205 (57%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 142 TFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG +P N + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F ++P
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFP 124
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVS 258
S KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK +
Sbjct: 125 SCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNKA 183
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNT 283
+Y + Q P N+
Sbjct: 184 STYHNQNNTYNTNYQQQYYRQPYNS 208
Score = 167 (63.8 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 63/223 (28%), Positives = 104/223 (46%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
++++GDL + + +++ F + G K++ R+TG + GY FV DE+ R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+NG ++ P +N + Y A+Y + + P +VFVG+L S V
Sbjct: 67 RLNG--------KLVPGSNPPR-KFKLNY--ATYGK----RPEPGPE-FSVFVGDLTSEV 110
Query: 295 TDEHLRELF-SQYGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRML-NGTQLGGQN 347
D L + F ++ K+ P G + GFV+F+D + ++AL N + LGG+
Sbjct: 111 DDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKP 170
Query: 348 IRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAPQ 390
IR+S + NK A NQ N Y Q Y Y + PQ
Sbjct: 171 IRISIAVNKGNK-ASTYHNQNNTYNTNYQQQYYRQPYNSYYPQ 212
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 88/306 (28%), Positives = 158/306 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++G+L + E + F+ G + K+I + TG + Y F+EF A L
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGN-DPYCFVEFYENRHAAAALA 66
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + ++ ++NWAS + +K+D + +FVGDL+ +++ ++ F A +
Sbjct: 67 AMNGRKILG--KDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAF-APFGKI 123
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV-SGQ 260
A+VV D TG++KGYGF+ F ++ + A+ +MNG + R +R AT K +
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSN 183
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ + + + + + P+N TV+ G + S ++D+ +R+ FS +GQ++ +++ K
Sbjct: 184 NEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGY 243
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK---QAQPDPNQWNAGYYGYAQ 377
FV+F A A+ +NGT + G ++ WG+ ++ Q P P Q N Y AQ
Sbjct: 244 SFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQ-NKPTYA-AQ 301
Query: 378 GYENYG 383
Y +G
Sbjct: 302 PYGQWG 307
Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 54/190 (28%), Positives = 87/190 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
+D P T++VG+L+ DVT+ ++ + F P K K+++D TG Y FV F +
Sbjct: 5 EDQP-RTLYVGNLSRDVTEALILQVFSQIGPC-KSCKMILDT-TGNDP-YCFVEFYENRH 60
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + M++ A+ T S Q+ K + + V D P +T
Sbjct: 61 AAAALAAMNGRKILGKDMKVNWAS---TPSSQK---KDTSNHFHVFVGDLSPEIST---- 110
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
D + S + + K GF+ F ++ AE A++ +NG LGG+ I
Sbjct: 111 --DDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQI 168
Query: 349 RLSWG-RSPS 357
R +W R PS
Sbjct: 169 RTNWATRKPS 178
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 90/308 (29%), Positives = 155/308 (50%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA---- 177
Query: 262 QYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
PK++Y+++ S DD P+N TV+ G + S +T++ +R+ FS +GQ++ +++
Sbjct: 178 --PKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 235
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGY 375
K FV+F A A+ +NGT + G ++ WG+ + + NQ GY
Sbjct: 236 PDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMISPVQQNQ-----IGY 290
Query: 376 AQGYENYG 383
Q Y +G
Sbjct: 291 PQAYGQWG 298
Score = 137 (53.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 55/205 (26%), Positives = 89/205 (43%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q+ K + + V D P TT
Sbjct: 59 AASALAAMNGRKIMGKEVKVNWAT---TPSSQK---KDTSNHFHVFVGDLSPEITT---- 108
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
+ I S + + K GFV F ++ AE A++ + G LGG+ I
Sbjct: 109 --EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 166
Query: 349 RLSWG-RSPSNKQAQPDPNQWNAGY 372
R +W R P ++ + N Y
Sbjct: 167 RTNWATRKPPAPKSTYESNTKQLSY 191
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 SALAAMNGRKIMGKEVKVNWATTPSSQK 88
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 81/282 (28%), Positives = 145/282 (51%)
Query: 84 LWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+W+GDL W +E+ N + VK++R++ Y F+ F + + +Q
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 143 FNGTPMPNGEQNFRLNWA---SFGAGEKRDDTP-DHTIFVGDLAADVTDYMLQETFRARY 198
NG +P+ + F+LN++ S G+ ++ ++ +++IF+GDLA +V+D L F +Y
Sbjct: 145 -NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKY 203
Query: 199 PST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
P+ K AKV+ D T ++KG+GFV+F RA+ EM G ++ +R+G A
Sbjct: 204 PNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHVD 263
Query: 258 SGQQQYPKASYQNSQVAQSDD------DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH 311
+ + K + V QS DPNNT+ +G L +T+ L + F +G LV+
Sbjct: 264 TSFKPVTKLDHHRVPVPQSQPALNQFTDPNNTSFTIGGLSGRITESELEQHFIGFGDLVY 323
Query: 312 VKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG 353
++ + G+++F RS AE A + G + ++++WG
Sbjct: 324 CRVSKDYQTGYIKFYSRSAAESAFLNMYGFMINDCRLQITWG 365
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 5 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 64
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 65 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 122
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 123 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 181
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 182 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 241
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 242 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 301
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 302 QQVDYSQWGQWSQVYGNPQQYGQY 325
Score = 171 (65.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 3 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 62 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 115
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 116 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 175
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 176 GQWLGGRQIRTNWATRKPPAPKSTQ 200
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 93/324 (28%), Positives = 153/324 (47%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIR--------NKQTG-------QIE 123
G+ RTL++G+L + E + F+ G + K+I N G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+
Sbjct: 66 PYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
++T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R +R AT K Q + + P N TV+ G + S +TD+ +R+ F
Sbjct: 183 RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 304 SQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ-- 360
S +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP +
Sbjct: 243 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNF 302
Query: 361 AQPDPNQWN--AGYYGYAQGYENY 382
Q D +QW + YG Q Y Y
Sbjct: 303 QQVDYSQWGQWSQVYGNPQQYGQY 326
Score = 171 (65.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/205 (26%), Positives = 94/205 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDE 226
DD T++VG+L+ DVT+ ++ + F P K K++ ++ R GF
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 227 SEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
S E F R A N + + G++ K ++ + +Q D N+ V
Sbjct: 63 SNDPYCFVE----FYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHV 116
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLN 339
FVG+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 340 GTQLGGQNIRLSWG--RSPSNKQAQ 362
G LGG+ IR +W + P+ K Q
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQ 201
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 91/312 (29%), Positives = 156/312 (50%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT +K + +
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKS 180
Query: 262 QYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
Y + Q S S P N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ----PDPNQWNA 370
F++F+ A A+ +NGT + G ++ WG+ +P +Q Q P QW
Sbjct: 241 SFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQWGQ 300
Query: 371 GYYGYAQGYENY 382
+YG AQ Y
Sbjct: 301 -WYGNAQQIGQY 311
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 55/205 (26%), Positives = 89/205 (43%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q+ K + + V D P TT
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQK---KDTSNHFHVFVGDLSPEITT---- 108
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
+ I S + + K GFV F ++ AE A++ + G LGG+ I
Sbjct: 109 --EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 166
Query: 349 RLSWG-RSPSNKQAQPDPNQWNAGY 372
R +W R P ++ + N Y
Sbjct: 167 RTNWATRKPPAPKSTYESNTKQLSY 191
Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 98/304 (32%), Positives = 156/304 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R+++ G++ + E L FA TG + + K+IR ++ YGF+ + R A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
T NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F A
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 201 T---KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT----- 252
+ + A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATF 234
Query: 253 --NKKTVSGQQ--QYPKASYQNSQVAQSDDDPNN----TTVFVGNLDSIVTDEHLRELFS 304
+K + G+ + S ++ + ++D P N TTV+VGNL VT L LF
Sbjct: 235 GEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFY 294
Query: 305 QYGQLV--HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ-LGGQNIRLSWGRSPSNKQA 361
G V V++ K GFV++ A A++M N L + IR SWG P+
Sbjct: 295 TLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGT 354
Query: 362 QPDP 365
+P
Sbjct: 355 ASNP 358
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 42/184 (22%), Positives = 77/184 (41%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D T +++ G++ VT+ +LQE F + P + D+ YGFV + D
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDK-----SSYGFVHYFDRRC 112
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ +NG +PM++ N +GQ++ +S+ N V + + +F
Sbjct: 113 ASMAIMTLNGRHIFGQPMKV----NWAYATGQRE-DTSSHFNIFVGDLSPEVTDAALF-- 165
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
DS + + K + GFV F ++ A+ A+ +NG + + I
Sbjct: 166 --DSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Query: 349 RLSW 352
R +W
Sbjct: 224 RCNW 227
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 95/322 (29%), Positives = 160/322 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F G + K+I + T + Y F+EF A L
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLA 65
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 66 AMNGRKIMGKE--VKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAF-APFGRI 122
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA---- 178
Query: 262 QYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
PKA+Y+ + S D+ P+N TV+ G + + +T++ +R+ FS +GQ++ V++
Sbjct: 179 --PKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVF 236
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN-----KQAQPDPNQWNA 370
K FV+F A A+ +NGT L G ++ WG+ ++ +Q Q P Q
Sbjct: 237 PDKGYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQV-PQQSKV 295
Query: 371 GYYG--YAQGYENYGYAAAAPQ 390
G+ Y Q + YG A Q
Sbjct: 296 GFAAQPYGQWGQWYGNAQQISQ 317
Score = 142 (55.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 54/199 (27%), Positives = 87/199 (43%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
DD T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPC-KSCKMIVD--TAGNDPYCFVEFFEHRH 59
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
++ MNG + +++ AT+ S Q+ K + + V D P TT
Sbjct: 60 AAASLAAMNGRKIMGKEVKVNWATSP---SSQK---KDTSNHFHVFVGDLSPEITT---- 109
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
D I S + + K GFV F ++ AE A++ + G LGG+ I
Sbjct: 110 --DDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 167
Query: 349 RLSWG-RSPSNKQAQPDPN 366
R +W R P +A + N
Sbjct: 168 RTNWATRKPPAPKATYETN 186
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 97/302 (32%), Positives = 156/302 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L FA TG V + K+IR +++ YGF+ + R A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + +G+ R+DT H IFVGDL+ +VTD ML F YP+
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQ-REDTSSHFNIFVGDLSPEVTDAMLFTCFSV-YPT 164
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
A+V+ D+ TGR++G+GFV F ++ + A+ E+ G + +R +R AT K SG+
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT-KGATSGE 223
Query: 261 QQYPKASYQ----NSQVAQSDDD------PNN----TTVFVGNLDSIVTDEHLRELFSQY 306
+ S S V++ D P N TTV+VGNL V+ L F
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSL 283
Query: 307 GQLV--HVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQNIRLSWGRSPSNKQAQP 363
G V V++ K GFV+++ A A++M N + L G+ ++ SWG P+
Sbjct: 284 GAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTAS 343
Query: 364 DP 365
+P
Sbjct: 344 NP 345
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 96/302 (31%), Positives = 156/302 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R++++G++ + E L F TG V + K+IR ++ YGF+ + R A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPS 200
+ NG + Q ++NWA + G+ R+DT H IFVGDL+ +VTD L ++F + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQ-REDTSSHFNIFVGDLSPEVTDATLYQSFSV-FSS 169
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT-------N 253
A+V+ D+ TGR++G+GFV F ++ + A+ EMNG + S+R +R AT +
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDD 229
Query: 254 KKTVSGQQ--QYPKASYQNSQVAQSDDDPNN----TTVFVGNLDSIVTDEHLRELFSQYG 307
K + G+ + S ++ + +++ P N TTV+VGNL VT L F G
Sbjct: 230 KLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG 289
Query: 308 QLV--HVKIPAGKRCGFVQFADRSCAEEALRMLNGTQ--LGGQNIRLSWGRSPSNKQAQP 363
V V++ K GFV++ A A++M N TQ L + I+ SWG P+
Sbjct: 290 AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGN-TQPYLFNRQIKCSWGNKPTPPGTAS 348
Query: 364 DP 365
+P
Sbjct: 349 NP 350
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 95/323 (29%), Positives = 159/323 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 309
AT +K + + Y + Q S S PNN TV+ G + S +T++ +R+ FS +GQ+
Sbjct: 182 AT-RKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQI 240
Query: 310 VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ- 362
+ +++ K FV+F+ A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 241 MEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 300
Query: 363 ---PDPNQWNAGYYGYAQGYENY 382
P QW +YG AQ Y
Sbjct: 301 GYPPTYGQWGQ-WYGNAQQIGQY 322
Score = 198 (74.8 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 172 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 81/264 (30%), Positives = 128/264 (48%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 125
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 126 ITTDDIRAAF-APFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 184
Query: 245 PMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS 304
+R AT K Q A + P N TV+ G + S +T+ +R+ FS
Sbjct: 185 QIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFS 244
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSN-KQAQ 362
+GQ++ +++ K F++F+ A A+ +NGT + G ++ WG+ SP K Q
Sbjct: 245 PFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMAKNVQ 304
Query: 363 PDP----NQWNAGYYGYAQGYENY 382
P QWN YG Q Y Y
Sbjct: 305 PMEYGQWGQWNQ-MYGNPQQYGQY 327
Score = 161 (61.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 54/207 (26%), Positives = 95/207 (45%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK----GYGFVRFG 224
D++ T++VG+L+ DVT+ ++ + F P K K++ ++ K GF
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGPC-KSCKMITEQSDSSRKMNSSSIGFSVLQ 61
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNT 283
S E F R A N + + G++ K ++ + +Q D N+
Sbjct: 62 HTSNDPYCFVE----FFEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHF 115
Query: 284 TVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRM 337
VFVG+L +T + +R F+ +G++ ++ GK GFV F ++ AE A+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 338 LNGTQLGGQNIRLSWG--RSPSNKQAQ 362
+ G LGG+ IR +W + P+ K Q
Sbjct: 176 MGGQWLGGRQIRTNWATRKPPAPKSVQ 202
Score = 138 (53.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 44/173 (25%), Positives = 83/173 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G++ +V+++ TG+ +GYGF+ F ++ AE +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 144 NGTPMPNGEQNFRLNWASF-----------GAGEKRDD------TPDH-TIFVGDLAADV 185
G + G + R NWA+ A + R D +P + T++ G + + +
Sbjct: 177 GGQWL--GGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T++++++TF S G + I R+ KGY F+RF A+ +NG
Sbjct: 235 TEHLMRQTF-----SPFGQIMEI-RVFPE-KGYSFIRFSSHESAAHAIVSVNG 280
Score = 42 (19.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 352 WGRSPSNKQAQPDP--NQWNAGYYGY 375
+G PS QAQP NQ N G GY
Sbjct: 363 FGTQPS--QAQPGAVMNQANFGMAGY 386
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 96/331 (29%), Positives = 153/331 (46%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RTL++ +L + + +L T F G V+ K+I G + Y F+EF A LQ
Sbjct: 40 RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQ 96
Query: 142 TFNGTPMPNGEQNFRLNWA----SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRA 196
+ NG + E+ + WA G + +T H +FVGDL +++ L+E F
Sbjct: 97 SHNGRELL--EKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF-V 153
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ AK++ D T + KGYGFV + + RA+ EMNG + R +R AT K
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
Query: 257 VSGQQQYPKAS-----------YQNSQVAQSDDDPN-----NTTVFVGNLDSIVTDEHLR 300
G++ + Y N D+ N NT+V+VGN+ ++ DE +R
Sbjct: 214 EDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNIANLGEDE-IR 272
Query: 301 ELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS-PSNK 359
F ++G + V+ + FV+F + A A+ +N +GGQ +R SWG+S S K
Sbjct: 273 RAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGK 332
Query: 360 QAQPDPNQWN-AGYYGYAQGYENYGYAAAAP 389
++ +G YGY G G + P
Sbjct: 333 PSERGSGGGGGSGNYGYGYGNSGGGGGSGGP 363
Score = 141 (54.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 35/108 (32%), Positives = 58/108 (53%)
Query: 266 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKRCGF 322
A + Q+A +DP T+FV NLD +TDE L LF+Q G ++ KI F
Sbjct: 25 AEREGFQLASGSEDPR--TLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAF 82
Query: 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWG---RSPSNKQAQPDPNQ 367
V+F+D + A AL+ NG +L + + ++W R P +++P+ ++
Sbjct: 83 VEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSR 130
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 64/198 (32%), Positives = 113/198 (57%)
Query: 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+++ D+ D ++++GDLA DVTD L F+ RYPS + A+V++D TG ++GYGFV+F
Sbjct: 106 QQQSDS-DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFAS 164
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
+ E+ +A+ +MNG + + +P+++ T+K+ S P + DPNNT +
Sbjct: 165 DVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLT---------STDPNNTAI 215
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGG 345
+V LD + + L+ +F YG++ ++K+ K FV F +R AE A LN +G
Sbjct: 216 YVSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAFG-LNNFPVGN 274
Query: 346 QNIRLSWGRSPSNKQAQP 363
+++ WG++ + P
Sbjct: 275 TRLKVQWGKNVAPPPKSP 292
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 96/328 (29%), Positives = 162/328 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSN 358
+GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ +P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ 295
Query: 359 KQAQ---PDP-NQWNAGYYGYAQGYENY 382
+Q Q P P QW +YG AQ Y
Sbjct: 296 QQNQIGYPQPYGQWGQ-WYGNAQQIGQY 322
Score = 198 (74.8 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 172 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 95/327 (29%), Positives = 161/327 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SP-- 356
+GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ +P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ 295
Query: 357 SNKQAQPDP-NQWNAGYYGYAQGYENY 382
N+ P P QW +YG AQ Y
Sbjct: 296 QNQIGYPQPYGQWGQ-WYGNAQQIGQY 321
Score = 198 (74.8 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 172 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 93/322 (28%), Positives = 158/322 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
+GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ + P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLD-MINPV 294
Query: 365 PNQWNAGY-YGYAQGYENYGYA 385
Q GY Y Q + YG A
Sbjct: 295 QQQNQIGYPQAYGQWGQWYGNA 316
Score = 197 (74.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 172 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 93/322 (28%), Positives = 158/322 (49%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFS 304
AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 235
Query: 305 QYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
+GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ + P
Sbjct: 236 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLD-MINPV 294
Query: 365 PNQWNAGY-YGYAQGYENYGYA 385
Q GY Y Q + YG A
Sbjct: 295 QQQNQIGYPQAYGQWGQWYGNA 316
Score = 197 (74.4 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFYEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 172 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 202
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 93/323 (28%), Positives = 158/323 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 119 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 251 ATNKKTVSGQQQYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL 309
AT +K + + Y + Q S S P N TV+ G + S +T++ +R+ FS +GQ+
Sbjct: 178 AT-RKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 236
Query: 310 VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ- 362
+ +++ K F++F+ A A+ +NGT + G ++ WG+ +P +Q Q
Sbjct: 237 MEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 296
Query: 363 ---PDPNQWNAGYYGYAQGYENY 382
P QW +YG AQ Y
Sbjct: 297 GYPPAYGQWGQ-WYGNAQQIGQY 318
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 76/212 (35%), Positives = 119/212 (56%)
Query: 157 LNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215
L+ AS E R DT H +FVGDL+ DV++ +L+ TF ++ AKV+ D T ++
Sbjct: 207 LHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKS 265
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQ 275
KGYGFV F ++ A+ MNG + R +R A K + ++ K +++ QV
Sbjct: 266 KGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNS---EENRDKLTFE--QVFN 320
Query: 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEAL 335
S +NT+V+VGN+ TD LR+LFS YG + V+I +R FV++ + CA +A+
Sbjct: 321 STK-ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAI 379
Query: 336 RMLNGTQLGGQNIRLSWGRSPS--NKQAQPDP 365
+NG ++ G +R SWGR+ + N+ P P
Sbjct: 380 MEMNGKEMAGNQVRCSWGRTQAVPNQALNPLP 411
Score = 170 (64.9 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + L + F GEV KVIR+ QT + +GYGF+ F ++ AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 144 NGTPMPNGEQNFRLNWASF-GAGEKRDDTP----------DHT-IFVGDLAADVTDYMLQ 191
NG + G++ R NWA+ + E RD D+T ++VG+++ TD L+
Sbjct: 287 NGKWI--GKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ F ST G + R+ +T+ Y FVR+ + +A+ EMNG
Sbjct: 345 DLF-----STYGDIAEV-RIF-KTQRYAFVRYEKKECATKAIMEMNG 384
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/175 (41%), Positives = 106/175 (60%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
LW+G L+ +M E ++ F GE V+++RNK TG+ GY F+ FIS A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 143 FNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG P+P N FRLN AS + + + + +++VGDL++DV DY L + F +++ S
Sbjct: 68 LNGKPIPGTNPIVRFRLNSAS-NSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTS 126
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNK 254
K AKV++D L G +KGYGFVRFG E EQ A+ +MNG + T+P++I A K
Sbjct: 127 IKTAKVILDSL-GFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPK 180
Score = 121 (47.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 58/218 (26%), Positives = 96/218 (44%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+++G L + +T+ + FR +++ ++ TG GY FV F + L AM +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 236 MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 295
+NG +P+ P TN ++ S NS ++ +V+VG+L S V
Sbjct: 68 LNG-----KPI---PGTNPIV-----RFRLNSASNSYKLPGNE--REFSVWVGDLSSDVD 112
Query: 296 DEHLRELFS-QYGQLVHVKI---PAG--KRCGFVQFADRSCAEEALRMLNG-TQLGGQNI 348
D L ++FS ++ + K+ G K GFV+F + AL +NG LG + I
Sbjct: 113 DYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPI 172
Query: 349 RLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAA 386
++ A P P G G +G NYGY +
Sbjct: 173 KIC--------NAVPKPKSELGGAVG--EGNTNYGYGS 200
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 231 (86.4 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 58/190 (30%), Positives = 90/190 (47%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
R L++G+L + E L F G + +K++ +K + Y F+E+ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHDANIALQ 133
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
T NG + N ++NWA DDT +FVGDL +V D L+ F+ +PS
Sbjct: 134 TLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFKD-FPSY 188
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
V+ D TG ++GYGFV F + + AM M G + RP+RI A + +
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNN 248
Query: 262 QYPKASYQNS 271
+ +Y N+
Sbjct: 249 YQQRRNYGNN 258
Score = 149 (57.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 57/221 (25%), Positives = 98/221 (44%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D ++VG+L +T+ +L++ F+ P K++ID+ + Y FV + +
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIAN-IKIMIDK-NNKNVNYAFVEYHQSHDA 128
Query: 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGN 289
A+ +NG ++I A +Q SQ + SDD N +FVG+
Sbjct: 129 NIALQTLNGKQIENNIVKINWA----------------FQ-SQQSSSDDTFN---LFVGD 168
Query: 290 LDSIVTDEHLRELFSQYGQLV--HV----KIPAGKRCGFVQFADRSCAEEALRMLNGTQL 343
L+ V DE LR F + + HV + + + GFV F + A+ A+ + G L
Sbjct: 169 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 228
Query: 344 GGQNIRLSWGR---SPSNKQAQPDPNQWNAGYYGYAQGYEN 381
G+ +R++W + +N Q N N G+ Q N
Sbjct: 229 NGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNSN 269
Score = 109 (43.4 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339
P TT ++GN+ T+ L LF +G ++ K K C F+++ A + L
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALA 397
Query: 340 GTQLGGQNIRLSWGRSPSNKQAQ 362
G+N+R WG+ SN Q
Sbjct: 398 NFPFQGRNLRTGWGKERSNFMPQ 420
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 242 (90.2 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
Identities = 50/101 (49%), Positives = 65/101 (64%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFAD 327
+Q+ Q Q DPNNTTVFVG L S V++ L LF +G + VKIP GK CGFV++++
Sbjct: 506 HQHLQQGQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSN 565
Query: 328 RSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQAQPDPNQ 367
R AEEA+ + G +GG +RLSWGR S SNK+ Q Q
Sbjct: 566 REEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQ 606
Score = 227 (85.0 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 74/221 (33%), Positives = 106/221 (47%)
Query: 124 GYGFIEFISRAGAERVL----QTFNGTPMP------NGEQN----FRLNWASFGAGEKRD 169
GY F+EF S A+ L Q MP N N FRLNWAS GA
Sbjct: 189 GYCFVEFESFEDAQHALSLNGQLLPDIAMPSQSNFPNNPDNQKKYFRLNWAS-GATLSAP 247
Query: 170 --DTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDE 226
TP++++FVGDL+A T+ L F+ +P S K +V+ D ++G+++ +GFVRF +E
Sbjct: 248 IVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEE 307
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPAT--------NKKTVSGQ-QQYPKASYQNSQVAQSD 277
SE+ RA+ EMNG + + RP+R+ AT N + S Q QQY Q Q Q
Sbjct: 308 SERQRALIEMNGAWFAGRPLRVALATPRNVARRFNNRRFSPQHQQYQHQQQQQQQQHQHQ 367
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ H + +FS YG ++ I G+
Sbjct: 368 HQHQHQEQ---QQHQEQQQHHHQSVFSSYGGGPNMHIGGGE 405
Score = 90 (36.7 bits), Expect = 5.2e-26, Sum P(2) = 5.2e-26
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCF-AHTGEVVAVKVIRNKQT-------GQIE-GYGFIEFIS 132
RTLW+GDL W+DE + + + + V VK+I+ K G GY F+EF S
Sbjct: 138 RTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFVEFES 197
Query: 133 RAGAERVLQTFNGTPMPN 150
A+ L + NG +P+
Sbjct: 198 FEDAQHAL-SLNGQLLPD 214
Score = 83 (34.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 165 GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
G++ D + T+FVG L++DV++ L F+ + + K+ G K GFV++
Sbjct: 512 GQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKIP----PG--KNCGFVKYS 564
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQ 275
+ E A+ M G +R+ + + +VS ++ + Q +QVAQ
Sbjct: 565 NREEAEEAIAAMQGFVIGGNRVRL--SWGRVSVSNKKYQQQQQQQVAQVAQ 613
Score = 68 (29.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+L++GDL E +L F + V+V+ + +G+ +GF+ F + +R L
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRAL 314
Query: 141 QTFNG 145
NG
Sbjct: 315 IEMNG 319
Score = 37 (18.1 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 371 GYYGYAQGYENYGY 384
GYYG G GY
Sbjct: 447 GYYGQTSGSGGGGY 460
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---N 253
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+ N
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 254 KKTVSGQQQ 262
KK S + Q
Sbjct: 177 KKKESSENQ 185
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 52/203 (25%), Positives = 90/203 (44%)
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
+++++G+L + + + F + +++ D++TG+ GYGFV D++ R +
Sbjct: 2 NSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCL 61
Query: 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSI 293
++NG +P+ G K+ + Y K + + ++FV +L
Sbjct: 62 RKVNG-----KPLP-GATPPKRFKLSRSNYGKQG-----------ESSTFSLFVSDLTPD 104
Query: 294 VTDEHLRELFSQY------GQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNG-TQLGGQ 346
V D L E F + G++V K CGFV F + AL L G T LG +
Sbjct: 105 VDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQGATGLGKK 164
Query: 347 NIRLSWGRSPSNKQAQPDPNQ-W 368
+RLS S NK+ + NQ W
Sbjct: 165 ALRLSLASSRVNKKKESSENQIW 187
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 73/249 (29%), Positives = 130/249 (52%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 121
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT K
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA---- 177
Query: 262 QYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +++
Sbjct: 178 --PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 235
Query: 316 AGKRCGFVQ 324
K FV+
Sbjct: 236 PDKGYSFVR 244
Score = 183 (69.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 57/211 (27%), Positives = 100/211 (47%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + + G++ K ++ + +Q D N+ VFVG
Sbjct: 59 AAAALAAMNG----------------RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVG 100
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 101 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 160
Query: 343 LGGQNIRLSWG-RSPSNKQAQPDPNQWNAGY 372
LGG+ IR +W R P ++ + N Y
Sbjct: 161 LGGRQIRTNWATRKPPAPKSTYESNTKQLSY 191
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 71/244 (29%), Positives = 126/244 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRI 117
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A+VV D TG++KGYGFV F ++ + A+ +M G + R +R AT +K + +
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKS 176
Query: 262 QYPKASYQNS-QVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
Y + Q S S P N TV+ G + S +T++ +R+ FS +GQ++ +++ K
Sbjct: 177 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 236
Query: 321 GFVQ 324
F++
Sbjct: 237 SFIR 240
Score = 179 (68.1 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 55/205 (26%), Positives = 97/205 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F + A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
MNG + + G++ K ++ + +Q D N+ VFVG+L +
Sbjct: 61 AMNG----------------RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEI 102
Query: 295 TDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNI 348
T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G LGG+ I
Sbjct: 103 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 162
Query: 349 RLSWG-RSPSNKQAQPDPNQWNAGY 372
R +W R P ++ + N Y
Sbjct: 163 RTNWATRKPPAPKSTYESNTKQLSY 187
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 220 (82.5 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 59/187 (31%), Positives = 96/187 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ L++G+L E + F+ G V +K++ +K Y FIE+ + A+ L
Sbjct: 79 KILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN-YAFIEYDTNEVADMAL 137
Query: 141 QTFNGTPMPNGEQNFRLNWA----SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
T NG + + E ++NWA + + P IFVGDL+ +V D L+ F +
Sbjct: 138 NTLNGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAF-S 194
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
++ S K A V+ D T R++GYGFV FG++S+ A+ MNG + R +R A++K+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQ 254
Query: 257 VSGQQQY 263
QQ Y
Sbjct: 255 QQ-QQHY 260
Score = 170 (64.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 62/232 (26%), Positives = 104/232 (44%)
Query: 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRT 215
++N AS G + + + ++VG+L ++ +QE F K K++ D+
Sbjct: 63 QVNAASAKEGGR--EVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGF 120
Query: 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQ 275
Y F+ + A+ +NG +++ A ++G P
Sbjct: 121 N-YAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGN---PN---------- 166
Query: 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL--VHV----KIPAGKRCGFVQFADRS 329
+ ++P +FVG+L V DE LR FS++ L HV + + GFV F ++S
Sbjct: 167 NTEEPL-FNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQS 225
Query: 330 CAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYEN 381
AE AL+ +NG L G+ IR +W +Q Q NQ + G GY++GY N
Sbjct: 226 DAELALQTMNGEWLCGRAIRCNWASHKQQQQQQHYNNQ-HGG--GYSRGYRN 274
Score = 111 (44.1 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 32/128 (25%), Positives = 49/128 (38%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
G G P S Q+ + TTV++GN+ + L L +G
Sbjct: 378 GNVAGAPVAGGPGAIPVMSPQSYDIVLRQTPSWQTTVYLGNIAHFTQQQELIPLLQNFGF 437
Query: 309 LVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS-PSNKQAQP-DPN 366
+V K + C FV++ A A+ L G L G+ ++ WG+ P Q P + N
Sbjct: 438 IVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNLNGRPLKCGWGKERPPQFQNFPRNGN 497
Query: 367 QWNAGYYG 374
YG
Sbjct: 498 MHQVPMYG 505
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 280 (103.6 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 84/291 (28%), Positives = 144/291 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ L++ +L +D L+ F+ G +V+ KV + GQ GYGF++F + A+ +
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAI 191
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH----TIFVGDLAADVTDYMLQETFRA 196
+ NG + N +Q F F E+R+ D ++V +L+ TD L+ TF
Sbjct: 192 EKLNGKVL-NDKQIFV---GPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF-G 246
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+Y S A V+ D G+++ +GFV F + + RA+ +NG + +G A K
Sbjct: 247 QYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS- 304
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-- 314
+ + + Q S + D N ++V NLD VTDE LRELF+++G + K+
Sbjct: 305 -ERELELSRRYEQGSSDGGNKFDGLN--LYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 361
Query: 315 -PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
P+G K GFV F+ S A L +NG +GG+ + ++ + ++A+
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAK 412
Score = 215 (80.7 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 57/219 (26%), Positives = 111/219 (50%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G + +L++GDL + + ++ L F +VV+V+V R+ T GYG++ + + AE+
Sbjct: 43 GALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEK 102
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198
+Q N + + NG+ R+ ++S + +R + +FV +L V + L E F
Sbjct: 103 AMQKLNYSYL-NGKM-IRITYSSRDSSARRSGVGN--LFVKNLDKSVDNKTLHEAFSG-C 157
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK--- 255
+ KV D + G+++GYGFV+F E A+ ++NG + + + +GP K+
Sbjct: 158 GTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE 216
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+ + + ++ +N A +DD+ T G++ S V
Sbjct: 217 SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAV 255
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 269 (99.8 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 78/269 (28%), Positives = 139/269 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G +V+ KV + +GQ +GYGF+++ + A++ ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYP 199
NG + N +Q + F ++RD T + T ++V +LA TD L+ F Y
Sbjct: 185 NGMLL-NDKQVYV---GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYG 239
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
A V+ D G++KG+GFV F + + RA+ +NG + +G A K S
Sbjct: 240 KITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK---SE 295
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PA 316
++ + Y+ + + ++ D ++ ++V NLD ++DE L+E+FS +G + K+ P
Sbjct: 296 RETELRVRYEQN-LKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 317 G--KRCGFVQFADRSCAEEALRMLNGTQL 343
G K GFV FA A EA+ L+G +
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMI 383
Score = 217 (81.4 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 55/215 (25%), Positives = 110/215 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ G+ R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPL-YGKP-IRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTFSS-FGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK---TVSG 259
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP ++ + +
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+ ++ +N + +DDD N G + S V
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAV 245
Score = 170 (64.9 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 55/205 (26%), Positives = 96/205 (46%)
Query: 149 PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI 208
PNG + + G + +++VGDL +VTD L + F + + +V
Sbjct: 11 PNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAF-GQMGTVVTVRVCR 69
Query: 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASY 268
D +T R+ GYG+V F + + RA+ E+N + +P+R+ Y S+
Sbjct: 70 DLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV-------------MY---SH 113
Query: 269 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----GKRCGFV 323
++ V +S N +F+ NLD + + L + FS +G +V K+ K GFV
Sbjct: 114 RDPSVRRSG--AGN--IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFV 169
Query: 324 QFADRSCAEEALRMLNGTQLGGQNI 348
Q+A+ A++A+ LNG L + +
Sbjct: 170 QYANEESAQKAIEKLNGMLLNDKQV 194
Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 48/192 (25%), Positives = 90/192 (46%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L + L +TF + + + KV +D +G++KGYGFV++ +E +A+ +
Sbjct: 126 IFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEK 183
Query: 236 MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 295
+NG+ + + + +GP ++ K + N V+V NL T
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTAN--KTKFTN--------------VYVKNLAESTT 227
Query: 296 DEHLRELFSQYGQL---VHVKIPAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
D+ L+ F +YG++ V +K GK GFV F + A A+ LNG + + +
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Query: 351 SWGRSPSNKQAQ 362
+ S ++ +
Sbjct: 288 GRAQKKSERETE 299
Score = 135 (52.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 41/171 (23%), Positives = 80/171 (46%)
Query: 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-----G- 151
L F G++ + V+++ + G+ +G+GF+ F + A R +++ NG + G
Sbjct: 231 LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 152 -------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
E R+ + E D ++V +L ++D L+E F + + + +
Sbjct: 290 AQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEKLKEIF-SPFGTVTSS 347
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KV+ D G +KG GFV F E AM++++G ++P+ + A K+
Sbjct: 348 KVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 205 (77.2 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 57/174 (32%), Positives = 89/174 (51%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E L F+ G V + K+IR + G + Y FIE+ + A L
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIR--EPGN-DPYAFIEYSNYQAATTALT 63
Query: 142 TFNGTPMPNGEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N E+ ++NWA S G K D + H IFVGDL+ ++ L+E F A +
Sbjct: 64 AMNKRLFL--EKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF-APFGE 120
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++V D T ++KGY FV F ++E A+ MNG + +R +R +T K
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 55/216 (25%), Positives = 96/216 (44%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D++ T++VG+L + V++ +L F P K K++ R G Y F+ + +
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGP-VKSCKII--REPGNDP-YAFIEYSNYQA 57
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+T MN + +++ AT+ G Q PK D ++ +FVG
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNWATSP----GNQ--PKT-----------DISSHHHIFVG 100
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI---P---AGKRCGFVQFADRSCAEEALRMLNGTQ 342
+L + E LRE F+ +G++ + +I P K FV F ++ AE A++ +NG
Sbjct: 101 DLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQW 160
Query: 343 LGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 378
+G ++IR +W +P G G G
Sbjct: 161 IGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPG 196
Score = 114 (45.2 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 28/107 (26%), Positives = 53/107 (49%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD-SIVTDEHLRELFSQYG 307
GP N V G Q++ N QS P NTTV+ G ++++D+ + + F Q+G
Sbjct: 194 GPG-NGSGVKGSQRHTFEEVYN----QSS--PTNTTVYCGGFPPNVISDDLMHKHFVQFG 246
Query: 308 QLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354
+ V++ K F++F + A A+ + +++ G ++ WG+
Sbjct: 247 PIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGK 293
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 257 (95.5 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 68/217 (31%), Positives = 112/217 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDL++++ L+E F + +VV D T ++KGYGFV F +SE A+T
Sbjct: 463 IFVGDLSSEIETQQLREAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITA 521
Query: 236 MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 295
MNG + +R +R AT K S + P ++ + P+N TV+VG ++S +T
Sbjct: 522 MNGQWLGSRSIRTNWATRKPPASKENIKP-LTFDE---VYNQSSPSNCTVYVGGVNSALT 577
Query: 296 ---DEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSW 352
+E L++ F+ YG + +++ K FV+F+ + A A+ ++ T++ Q ++ SW
Sbjct: 578 ALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW 637
Query: 353 GRSPSN-KQAQPDPNQWNAGYYGYAQGYENYGYAAAA 388
G+ + AQ Q A G+ YG AAA
Sbjct: 638 GKESGDPNNAQTIATQALNSAAAAAAGFP-YGVGAAA 673
Score = 163 (62.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 52/200 (26%), Positives = 98/200 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL ++ L F GE+ +V+R+ QT + +GYGF+ FI ++ AE +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD-------------TPDH-TIFVGDLAADVT--- 186
NG + G ++ R NWA+ +++ +P + T++VG + + +T
Sbjct: 523 NGQWL--GSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALS 580
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
+ +LQ+TF A Y + + +V D KGY FVRF + A+ ++ + +P+
Sbjct: 581 EEVLQKTF-APYGAIQEIRVFKD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPV 633
Query: 247 RI------GPATNKKTVSGQ 260
+ G N +T++ Q
Sbjct: 634 KCSWGKESGDPNNAQTIATQ 653
Score = 37 (18.1 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 372 YYGYAQGYENYG 383
Y GY QGY G
Sbjct: 731 YGGYQQGYMGMG 742
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 257 (95.5 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 71/218 (32%), Positives = 110/218 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFVGDL+A++ L++ F + +VV D T ++KGYGFV F +SE A+T
Sbjct: 98 IFVGDLSAEIETQQLKDAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITA 156
Query: 236 MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGN----LD 291
MNG + +R +R AT K + K + QS P N TV+ G L
Sbjct: 157 MNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSS--PTNCTVYCGGINGALS 214
Query: 292 SIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351
+ +E L++ FS YG + +++ K FV+F+ + A A+ +N T++ Q ++ +
Sbjct: 215 GFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCA 274
Query: 352 WGRSPSNKQAQPDPNQWNAGYYG-YAQGYENYGYAAAA 388
WG+ DPN +A G AQG+ +G AAAA
Sbjct: 275 WGKESG------DPNHMSAIAGGALAQGFP-FGSAAAA 305
Score = 148 (57.2 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 44/180 (24%), Positives = 86/180 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL ++ L F GE+ +V+R+ QT + +GYGF+ F+ ++ AE +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD---------------TPDH-TIFVGDLAADVTD 187
NG + G ++ R NWA+ + D +P + T++ G + ++
Sbjct: 158 NGQWL--GSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSG 215
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
++ +E + + S G I R+ + KGY FVRF + A+ +N + +P++
Sbjct: 216 FLNEEILQKTF-SPYGTIQEI-RVF-KDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PA 316
QQ + Q Q+ ++ P +FVG+L + + + L++ F+ +G++ ++ P
Sbjct: 73 QQMSQQQQQQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQ 132
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWG-RSPSNKQA 361
K GFV F +S AE A+ +NG LG ++IR +W R P +A
Sbjct: 133 TLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKA 181
Score = 44 (20.5 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 345 GQNIRLSW-GRSPSNKQAQP----DPNQWNAGYYG--YAQ--GYENYGYAAAAPQDP 392
GQ + W +P+ A P P Q+ G G Y Q GY+ GY Q P
Sbjct: 312 GQQVAGYWYPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGMGVQLP 368
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 257 (95.5 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 70/283 (24%), Positives = 136/283 (48%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K Q +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG----- 317
KA Y N ++V N++S TDE +ELF+++G +V +
Sbjct: 213 ETKAHYTN--------------LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL 258
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
K GFV + A +A+ LN ++L G+ + + GR+ +
Sbjct: 259 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV--GRAQKKNE 299
Score = 203 (76.5 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 67/263 (25%), Positives = 128/263 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G++++ K+ + + G+ +G+GF+ F A+ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKR-DDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + NG++ + S + + ++T H ++V ++ ++ TD QE F A++
Sbjct: 187 NGMLL-NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELF-AKFGP 244
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT--NKKTVS 258
A + D G+ KG+GFV + + ++A+ +N + + +G A N++
Sbjct: 245 IVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-- 316
++QY +Y+ ++A+ +FV NLD V DE L E F+ YG + K+
Sbjct: 304 LKKQYE--AYRLEKMAKYQ----GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE 357
Query: 317 -GKRCGFVQFADRSCAEEALRML 338
GK GF F S EEA + +
Sbjct: 358 NGKSKGF-GFVCFSTPEEATKAI 379
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 48/174 (27%), Positives = 83/174 (47%)
Query: 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153
DE + FA G +V+ + ++ G+++G+GF+ + A + ++ N + + NGE+
Sbjct: 232 DEQF-QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEK 288
Query: 154 ---------NFRLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N R++ + A EK +FV +L V D L+E F A Y +
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGT 347
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
AKV+ G++KG+GFV F E +A+TE N + +P+ + A K
Sbjct: 348 ITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 54/208 (25%), Positives = 91/208 (43%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
A+ G+ + + +++VGDL V++ L + F + S +V D +T + GY
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIF-SPIGSVSSIRVCRDAITKTSLGYA 82
Query: 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDD 279
+V F D +A+ ++N R RI Q+ P + S
Sbjct: 83 YVNFNDHEAGRKAIEQLNYTPIKGRLCRI---------MWSQRDPSLRKKGS-------- 125
Query: 280 PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQFADRSCAEEA 334
N +F+ NL + ++ L + FS +G ++ KI GK GFV F + A+EA
Sbjct: 126 -GN--IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEA 182
Query: 335 LRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ LNG L GQ I ++ S + +Q
Sbjct: 183 IDALNGMLLNGQEIYVAPHLSRKERDSQ 210
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 256 (95.2 bits), Expect = 4.6e-21, P = 4.6e-21
Identities = 76/267 (28%), Positives = 137/267 (51%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G++++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D +GR++G+GFV +G+ E +A+TEMNG + R + +G A +K +
Sbjct: 214 FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA--QKRI 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 271 ERQGELKRKFEQIKQ--ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNG 340
K GFV F+ A +A+ +NG
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 67/287 (23%), Positives = 127/287 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGD 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 QQYPKASYQNSQV---AQSDDDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ N + + DD +F GN S+ + + G+
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV------KVMMDNSGR------- 229
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV + + A++A+ +NG ++ G+ + + + +Q +
Sbjct: 230 -SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 52/189 (27%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEV-NGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + KV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 247 (92.0 bits), Expect = 7.0e-21, P = 7.0e-21
Identities = 74/283 (26%), Positives = 140/283 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L++ F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
Y T+ KV+ D TG++KG+GFVR+ +A+ E++G + + +G A +K
Sbjct: 221 EYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRA--QKK 277
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHV 312
+ + + ++ ++ P +++ NLD + DE L+E FS +G + V +
Sbjct: 278 IERLAEL-RRRFERLKLKDKTRPPG-VPIYIKNLDETINDEKLKEEFSLFGSISRAKVMM 335
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
++ GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 336 EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQA 378
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 66/264 (25%), Positives = 117/264 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQPDDHLRKSGVGN--IFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-QQ 262
KVV D G +KGY +V F + RA+ MNGV + R + +G + + + +
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
+A++ N V DD ++ L + ++ E +++ K GF
Sbjct: 193 RDRATFTNVFVKNFGDDIDDE-----KLKKLFSEYGPTESV----KVIRDATGKSKGFGF 243
Query: 323 VQFADRSCAEEALRMLNGTQLGGQ 346
V++ A++A+ L+G + G+
Sbjct: 244 VRYETHEAAQKAVLELHGKSIDGK 267
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 254 (94.5 bits), Expect = 7.6e-21, P = 7.6e-21
Identities = 76/267 (28%), Positives = 136/267 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A +K +
Sbjct: 214 FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA--QKRI 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + + ++V NLD + D+ LR+ FS YG + K+
Sbjct: 271 ERQGELKRKFEQIKQ--ERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNG 340
K GFV F+ A +A+ +NG
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 67/287 (23%), Positives = 128/287 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R GYGFV F + RA+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 QQYPKASYQNSQV---AQSDDDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ N + + DD +F GN S+ + + G+
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV------KVMMDDTGR------- 229
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV + + A++A+ +NG ++ G+ I + + +Q +
Sbjct: 230 -SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 54/189 (28%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 246 (91.7 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 74/283 (26%), Positives = 141/283 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV + D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSG 221
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + + +G A +K
Sbjct: 222 -YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRA--QKK 277
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHV 312
+ + + ++ ++ + P +++ NLD + DE L+E FS +G + V V
Sbjct: 278 IERLAEL-RRRFERLRLKEKSRPPG-VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV 335
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
++ GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 336 EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQA 378
Score = 153 (58.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 69/267 (25%), Positives = 119/267 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-QQ 262
KVV D G +KGY +V F + RA+ MNGV + R + +G + + + +
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 263 YPKASYQNSQVAQ--SD-DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+A++ N V +D DD +F G + E ++ + G+ K
Sbjct: 193 RDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPT----ESVKVIRDASGK--------SKG 240
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQ 346
GFV++ A++A+ L+G + G+
Sbjct: 241 FGFVRYETHEAAQKAVLDLHGKSINGK 267
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 245 (91.3 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 73/283 (25%), Positives = 141/283 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGE--KRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E RD +FV + D+ D L+E F +
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELF-S 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A +K
Sbjct: 221 EYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA--QKK 277
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHV 312
+ + + ++ ++ + P +++ NLD + DE L+E FS +G + V V
Sbjct: 278 IERLAEL-RRRFERLRLKEKSRPPG-VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV 335
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
++ GK G + F+ A +A+ +NG +G + ++++ G++
Sbjct: 336 EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQA 378
Score = 162 (62.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 68/264 (25%), Positives = 117/264 (44%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + S
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSA-FGSILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-QQ 262
KVV D G +KGY +V F + RA+ MNGV + R + +G + + + +
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
KA++ N V DD ++ L + ++ E +++ K GF
Sbjct: 193 RDKATFTNVFVKNFGDDMDDD-----KLKELFSEYGPTESV----KVIRDSSGKSKGFGF 243
Query: 323 VQFADRSCAEEALRMLNGTQLGGQ 346
V++ A++A+ L+G + G+
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGK 267
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 245 (91.3 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 73/283 (25%), Positives = 141/283 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + G +GY ++ F S A A R +
Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNGS-KGYAYVHFDSLAAANRAI 162
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRA 196
NG + N Q + R + A E R D T +FV ++ D+ D L+E F
Sbjct: 163 WHMNGVRL-NNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-C 220
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
Y T+ KV+ D +G++KG+GFVR+ +A+ +++G + + +G A +K
Sbjct: 221 EYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA--QKK 277
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL----VHV 312
+ + + ++ ++ + P +++ NLD + DE L+E FS +G + V +
Sbjct: 278 IERLAEL-RRRFERLRLKEKSRPPG-VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM 335
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
++ GK G V F+ A +A+ +NG +G + + ++ G++
Sbjct: 336 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 66/264 (25%), Positives = 116/264 (43%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++GDL + E L F G + ++ R+ T GYG++ F A AE L T
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + NG+ FRL W+ ++ + IF+ +L + + L F A + +
Sbjct: 80 N-FDLINGKP-FRLMWSQ--PDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSA-FGNILS 134
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-QQ 262
KVV D G +KGY +V F + RA+ MNGV + R + +G + + + +
Sbjct: 135 CKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
+A++ N V DD ++ L + + E +++ K GF
Sbjct: 193 RDRATFTNVFVKNIGDDIDDE-----KLKELFCEYGPTESV----KVIRDASGKSKGFGF 243
Query: 323 VQFADRSCAEEALRMLNGTQLGGQ 346
V++ A++A+ L+G + G+
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGK 267
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 187 (70.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 79 GEIRT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
GE +T L I L M + + + F GE+ + K++R+K TGQ GYGF+ ++ A
Sbjct: 38 GESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R + +FNG + N + ++++A D ++V + +T + L+ FR
Sbjct: 98 RAVSSFNGLRLQN--KTIKVSYAR----PSNDQIKGSNLYVSGIPKSMTLHELESIFRP- 150
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+ ++++ D +TG +KG GFVRF + E A+ +NG
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 119 (46.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 250 PATNKKTVSGQQQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYG 307
PATN + V+G + + S ++ VA + D +FV NL S D L +LFSQ+G
Sbjct: 340 PATNGQ-VAGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFG 398
Query: 308 QLVHVKI--PAGKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
+V+VKI ++C FV ++ + A A+ LNGT L G+ +++
Sbjct: 399 AIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 105 (42.0 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYG 219
AS A DT + +FV +L++D D +L + F +++ + K++ D LT + KGY
Sbjct: 360 ASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLF-SQFGAIVNVKILRD-LTQQCKGYA 417
Query: 220 FVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
FV + +E AM +NG + + +++
Sbjct: 418 FVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 82 (33.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ + M L + F G+++ +++ + TG +G GF+ F + A+ ++T
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 144 NGTPMPNG 151
NG+ +P+G
Sbjct: 190 NGS-IPSG 196
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/184 (31%), Positives = 92/184 (50%)
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263
A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT K Q
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 264 PKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFV 323
+ + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 324 QFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQ--AQPDPNQWN--AGYYGYAQG 378
+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + YG Q
Sbjct: 123 RFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQ 182
Query: 379 YENY 382
Y Y
Sbjct: 183 YGQY 186
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 40/145 (27%), Positives = 69/145 (47%)
Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF------GAG 165
+V+++ TG+ +GYGF+ F ++ AE + G + G + R NWA+
Sbjct: 4 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQ 61
Query: 166 EKR------DD-----TPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213
E +D +P + T++ G +A+ +TD ++++TF S G + I R+
Sbjct: 62 ENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEI-RVFP 115
Query: 214 RTKGYGFVRFGDESEQLRAMTEMNG 238
KGY FVRF A+ +NG
Sbjct: 116 E-KGYSFVRFSTHESAAHAIVSVNG 139
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 249 (92.7 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 81/271 (29%), Positives = 134/271 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G G+GF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENGS-RGHGFVHFETQEAATRAI 155
Query: 141 QTFNGTPMPNGEQNF-------RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
QT NG + N + F + A FGA + T +++ + D+ D L+E
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRKEREAEFGA-RAMEFT---NVYIKNFGDDMDDNRLREI 210
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F +R+ T KV++D TGR+KG+GFV F E +A+ +MNG + R + +G A
Sbjct: 211 F-SRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA-- 266
Query: 254 KKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVK 313
+K + Q + + Q Q S N ++V NLD + DE LR+ FS YG + K
Sbjct: 267 QKRLERQSELKRKFEQMKQERVSRYQGVN--LYVKNLDDGIDDERLRKEFSPYGTITSAK 324
Query: 314 IPA----GKRCGFVQFADRSCAEEALRMLNG 340
+ K GFV F+ A +A+ +NG
Sbjct: 325 VMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 199 (75.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 66/282 (23%), Positives = 128/282 (45%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ + + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPVRIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D G ++G+GFV F + RA+ MNG+ + R + +G ++K +
Sbjct: 125 ILSCKVVCDE-NG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAE 182
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + DD ++ L I + + S + H K
Sbjct: 183 FGARAMEFTNVYIKNFGDDMDDN-----RLREIFS--RFGKTLSVKVMMDHTG--RSKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG ++ G+ + + + +Q++
Sbjct: 234 GFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 53/189 (28%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWASFGAGE----KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG + RL S + K++ + ++V +L +
Sbjct: 248 VADMNGKEI-NGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DERLRKEF-SPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 240 (89.5 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 73/276 (26%), Positives = 128/276 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+LW+ +L+ WM+E Y+ F + V V + ++G I IEF S+ A L+
Sbjct: 4 SLWLNNLEEWMNEDYIRAIFEN---VRKVNYYEDGESGAILKTCCIEFESQDAARNALER 60
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
+ + +G N S + + +F+ ++ +V++ ++ F+ RY +
Sbjct: 61 QSTQRLISG------NPISLDVVPEWQKPSYYMLFISNIDPEVSENDIKYLFQ-RY-NFI 112
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA-TNKKTVSGQQ 261
A+V + + G + F+ +ES+ A EM G FC R + + ++K T
Sbjct: 113 SARV-LRCVDGTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKSDKNTYLSSP 171
Query: 262 QYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 321
+ Y Q DPNNT V+V L +T + LR F +G++++ ++ G
Sbjct: 172 GF----YGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSG 225
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 357
+ FA R AE+A+ +N L G I+LSW R PS
Sbjct: 226 RIVFAQRYFAEQAINEMNNFPLHGVRIQLSWARPPS 261
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 197 (74.4 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
Score = 163 (62.4 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL DVT+ +L E F +V D +T ++ GY +V + + ++ RA+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNT-VGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+N TN + GQ S+++ + +S +FV NLD +
Sbjct: 76 TLN-------------YTN---IKGQPARLMWSHRDPSLRKS----GTGNIFVKNLDKSI 115
Query: 295 TDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++ L + FS +G ++ K+ K GFV + D A+EA+ +NG QLG +N+
Sbjct: 116 DNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 111 (44.1 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 257 VSGQQQYPKASYQNSQVAQSD---DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-- 311
V+G Q K Y + +S+ +D T ++V N VT+ HLR+LF+ YG++
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 312 VKIPAGKR--CGFVQFADRSCAEEALRMLNGTQL 343
VK+ R C F+ +AD A+ A+ LNG ++
Sbjct: 224 VKMDNKNRKFC-FINYADAESAKNAMDNLNGKKI 256
Score = 106 (42.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 30/155 (19%), Positives = 71/155 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L +D L F+ G +++ KV + + G+ + YGF+ + A+ ++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
NG + G +N + + +DT ++V + VT+ L++ F P +
Sbjct: 165 NGVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN---PYGEI 219
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+++ ++ + + + F+ + D AM +NG
Sbjct: 220 TSMIV-KMDNKNRKFCFINYADAESAKNAMDNLNG 253
Score = 90 (36.7 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 241 CSTRP--MRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 298
C+ P + +GP ++ + + KA + N V ++ + +++ NLD + D
Sbjct: 410 CADTPNILYVGPHQSR---ARRHAILKAKFDNLNV-ENKNKHQGVNLYIKNLDDGIDDIM 465
Query: 299 LRELFSQYGQLVHVKI-----PAGKRCGFVQFADRSCAEEA-----LRMLNGTQL 343
LRELF +G + K+ K GFV FA + A +A L+++NG L
Sbjct: 466 LRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPL 520
Score = 41 (19.5 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSD--DDPNNTTVFVG 288
+TN SG S + + A SD D PN ++VG
Sbjct: 383 STNNNNNSGSSMNNAGSAKKDETAASDCADTPN--ILYVG 420
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 197 (74.4 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 52/172 (30%), Positives = 87/172 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V +++V R+ T + GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + Q RL W+ ++ T + IFV +L + + L +TF + + +
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTGN--IFVKNLDKSIDNKALFDTF-SMFGNIL 131
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
KV D G++K YGFV + DE A+ ++NGV ++ + +GP K
Sbjct: 132 SCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
Score = 163 (62.4 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VGDL DVT+ +L E F +V D +T ++ GY +V + + ++ RA+
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNT-VGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
+N TN + GQ S+++ + +S +FV NLD +
Sbjct: 76 TLN-------------YTN---IKGQPARLMWSHRDPSLRKS----GTGNIFVKNLDKSI 115
Query: 295 TDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++ L + FS +G ++ K+ K GFV + D A+EA+ +NG QLG +N+
Sbjct: 116 DNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 111 (44.1 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 257 VSGQQQYPKASYQNSQVAQSD---DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVH-- 311
V+G Q K Y + +S+ +D T ++V N VT+ HLR+LF+ YG++
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 312 VKIPAGKR--CGFVQFADRSCAEEALRMLNGTQL 343
VK+ R C F+ +AD A+ A+ LNG ++
Sbjct: 224 VKMDNKNRKFC-FINYADAESAKNAMDNLNGKKI 256
Score = 106 (42.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 30/155 (19%), Positives = 71/155 (45%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L +D L F+ G +++ KV + + G+ + YGF+ + A+ ++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
NG + G +N + + +DT ++V + VT+ L++ F P +
Sbjct: 165 NGVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN---PYGEI 219
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
+++ ++ + + + F+ + D AM +NG
Sbjct: 220 TSMIV-KMDNKNRKFCFINYADAESAKNAMDNLNG 253
Score = 90 (36.7 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 241 CSTRP--MRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEH 298
C+ P + +GP ++ + + KA + N V ++ + +++ NLD + D
Sbjct: 410 CADTPNILYVGPHQSR---ARRHAILKAKFDNLNV-ENKNKHQGVNLYIKNLDDGIDDIM 465
Query: 299 LRELFSQYGQLVHVKI-----PAGKRCGFVQFADRSCAEEA-----LRMLNGTQL 343
LRELF +G + K+ K GFV FA + A +A L+++NG L
Sbjct: 466 LRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPL 520
Score = 41 (19.5 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSD--DDPNNTTVFVG 288
+TN SG S + + A SD D PN ++VG
Sbjct: 383 STNNNNNSGSSMNNAGSAKKDETAASDCADTPN--ILYVG 420
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 204 (76.9 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 66/246 (26%), Positives = 118/246 (47%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVG 179
+GYGF+ F ++ AER ++ NG + N + F R E + T +++
Sbjct: 106 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
+ D+ D L++ F ++ KV+ D +G++KG+GFV F + +A+ EMNG
Sbjct: 165 NFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 222
Query: 240 FCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 299
+ + + +G A +K V Q + + Q Q + N ++V NLD + DE L
Sbjct: 223 ELNGKQIYVGRA--QKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 278
Query: 300 RELFSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
R+ FS +G + K+ G K GFV F+ A +A+ +NG + + + ++ +
Sbjct: 279 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 356 PSNKQA 361
+QA
Sbjct: 339 KEERQA 344
Score = 165 (63.1 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 215
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 216 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 275 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 331
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 332 YVALAQRKE 340
Score = 150 (57.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 49/173 (28%), Positives = 83/173 (47%)
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
R PS + + VV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 89 RDPSLRKSGVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 146
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-- 314
+ + N V++ N + DE L++LF ++G + VK+
Sbjct: 147 REAELGARAKEFTN--------------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 192
Query: 315 -PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
+GK GFV F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 193 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 243
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 45/158 (28%), Positives = 71/158 (44%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI-----GPATNKKTV----SGQQQYPKASYQNSQVAQSDDDP-- 280
A+ MN +P+RI P+ K V +G + Y ++ + A+ +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMN 127
Query: 281 ----NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
N+ VFVG S E EL ++ + +V I
Sbjct: 128 GMLLNDRKVFVGRFKS--RKEREAELGARAKEFTNVYI 163
Score = 97 (39.2 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN 144
N
Sbjct: 72 MN 73
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 245 (91.3 bits), Expect = 7.1e-20, P = 7.1e-20
Identities = 74/267 (27%), Positives = 134/267 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F + A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
QT NG + N + F ++ S E + T +++ + D+ D L+E F A
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA- 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ +T KV++D +GR++G+GFV +G+ E +A++EMNG + R + +G A +K +
Sbjct: 214 FGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA--QKRI 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + + ++V NLD + D+ LR+ F YG + K+
Sbjct: 271 ERQSELKRKFEQIKQ--ERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNG 340
K GFV F+ A +A+ +NG
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 185 (70.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 67/287 (23%), Positives = 127/287 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + Y +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + +F+ +L + + L +TF A + +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R GYGFV F RA+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELE 182
Query: 261 QQYPKASYQNSQV---AQSDDDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ N + + DD +F GN S+ + + G+
Sbjct: 183 YGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV------KVMMDDSGR------- 229
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV + + A++A+ +NG ++ G+ I + + +Q++
Sbjct: 230 -SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 151 (58.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 51/189 (26%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNF------RLNWAS-----FGA--GEKRDDTPDHTIFVGDLAADVT 186
+ NG + NG + R+ S F E+ + ++V +L +
Sbjct: 248 VSEMNGKEV-NGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F Y + AKV+ + G +KG+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 245 (91.3 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 76/285 (26%), Positives = 140/285 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+ GDL + E +L F H VV+V+V R++ + GY +I F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSL-GYAYINFSNPNDAYRAMEA 108
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ ++ R+ ++ + + IF+ +L A + + L ETF + + +
Sbjct: 109 LNYTPL--FDRPIRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSS-FGTIL 163
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV +D +TGR+KGYGFV+F E A+ ++NG+ + + + +G ++
Sbjct: 164 SCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQE------ 216
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQL---VHVKIPAGK- 318
+A +N+ P T V+V NL + ++ LR+ F ++G + V ++ +G
Sbjct: 217 --RARDENTPT------PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 319 RC-GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
RC GFV F A A+ +NG LG + + + S ++ +
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Score = 242 (90.2 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 76/287 (26%), Positives = 144/287 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV + TG+ +GYGF++F A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 144 NGTPMPNGEQNFRLNWA--SFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG M N +Q F ++ A ++ TP T ++V +L ++ + L++TF ++
Sbjct: 197 NGMLM-NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF-GKFGV 254
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
A V+ D+ +G ++ +GFV F A+ +MNG+ + +G A K S +
Sbjct: 255 ISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKK---SER 310
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG 317
++ + ++ ++ + + +++ NLD V DE L+E+FS+YG + K+ P G
Sbjct: 311 EEELRRKFEQERINRFEKS-QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG 369
Query: 318 KRCGFVQFADRSCAEEALRML---NGTQLGGQNIRLSWGRSPSNKQA 361
GF F S EEALR L NG +G + + ++ + +++A
Sbjct: 370 MSRGF-GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 235 (87.8 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 74/278 (26%), Positives = 139/278 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 154
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 155 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 212
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A +K V
Sbjct: 213 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA--QKKV 269
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + K ++ + + +++ NLD + DE LR FS +G + VK+
Sbjct: 270 ERQAEL-KQMFEQLK-RERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE 327
Query: 316 AGKRCGF--VQFADRSCAEEALRMLNGTQLGGQNIRLS 351
G+ GF + F+ A +A+ +NG LG + + ++
Sbjct: 328 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Score = 202 (76.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 72/283 (25%), Positives = 131/283 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 71 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K + +
Sbjct: 126 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 183
Query: 263 YPKASYQNSQVAQ--SD-DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ + N + D DD VF ++ ++ + G+ K
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVF-SKYGKTLS---VKVMTDSSGK--------SKG 231
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG + GQ I + + +QA+
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 143 (55.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 188 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 246
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 247 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 305
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 306 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 247 RIGPA 251
I A
Sbjct: 363 SIALA 367
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 241 (89.9 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 75/288 (26%), Positives = 142/288 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L+ +D L F+ G +++ KV+ N+ + G+GF+ F + A++ + T
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTM 158
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH------TIFVGDLAADVTDYMLQETFRAR 197
NG + N + F F + +KR+ I+V +L D+ + LQ+ F ++
Sbjct: 159 NGMLL-NDRKVFV---GHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T+ KV+ D G+++G+GF+ F E +A+ MNG S + + +G A +K
Sbjct: 214 FGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA--QKRA 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q Q+ N ++V NLD + D+ L+E+FS YG + K+
Sbjct: 271 ERQNELKRRFEQMKQERQNRYQGVN--LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 190 (71.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 68/282 (24%), Positives = 125/282 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G +R + IF+ +L + + L +TF + + S
Sbjct: 70 DTMN-FEMIKG-QPIRIMWSHRDPGLRRSGMGN--IFIKNLENSIDNKALYDTF-STFGS 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
+KVV + R G+GFV F +A+ MNG+ + R + +G +++ +
Sbjct: 125 ILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Query: 261 QQYPKASYQNSQVA--QSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ N V + D D + + +R+ GQ +
Sbjct: 183 LGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD---SNGQ--------SR 231
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
GF+ F A++A+ +NG ++ GQ + + + + +Q
Sbjct: 232 GFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQ 273
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 235 (87.8 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 63/212 (29%), Positives = 104/212 (49%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FVG L+ ++ D L+ F GA+V+++R TG+++GYG+V F +S +A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
EM G RP+ + +T K S Y +SQ SD T+F+GNL
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD------TLFIGNLSFNA 281
Query: 295 TDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++L +F +YG ++ ++P K G+VQF+ A+ AL +NG + G+
Sbjct: 282 NRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPC 341
Query: 349 RLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYE 380
RL + +P + + N G+ G G E
Sbjct: 342 RLDFS-TPRDNTNNNNNNNRRGGFGGGFGGRE 372
Score = 204 (76.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PAT 252
+T
Sbjct: 345 FST 347
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 235 (87.8 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 63/212 (29%), Positives = 104/212 (49%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FVG L+ ++ D L+ F GA+V+++R TG+++GYG+V F +S +A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFE-HIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
EM G RP+ + +T K S Y +SQ SD T+F+GNL
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSD------TLFIGNLSFNA 281
Query: 295 TDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
++L +F +YG ++ ++P K G+VQF+ A+ AL +NG + G+
Sbjct: 282 NRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPC 341
Query: 349 RLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYE 380
RL + +P + + N G+ G G E
Sbjct: 342 RLDFS-TPRDNTNNNNNNNRRGGFGGGFGGRE 372
Score = 204 (76.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E TL++G L + +D+ +L F H G V+ +VI + TG+ GYG+++F S++ AE+
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT----------PDHTIFVGDLAADVTDYM 189
L+ G + N ++ A + +D P T+F+G+L+ +
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L F Y + +V T + KG+G+V+F E A+ MNG + RP R+
Sbjct: 286 LFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 250 PAT 252
+T
Sbjct: 345 FST 347
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 240 (89.5 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 71/288 (24%), Positives = 138/288 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F G V +++V R+ T + GY ++ F + E+ L
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G R+ W+ ++ T + +F+ +L + + L +TF A +
Sbjct: 141 LNYT-LIKGRP-CRIMWSQRDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSA-FGKIL 195
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRIGPATNKKTVSGQQ 261
KV +D L G KGYGFV F D E A E +NG+ + + + +G +++ +
Sbjct: 196 SCKVAVDEL-GNAKGYGFVHF-DSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV 253
Query: 262 QYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR-- 319
+ KA++ N V++ NLD+ +T++ +LF Q+G++ + + +
Sbjct: 254 EALKANFTN--------------VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299
Query: 320 ---CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
GFV +A+ CA++A+ LN + G+ + + GR+ + + +
Sbjct: 300 PRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV--GRAQKKHEREEE 345
Score = 168 (64.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 60/287 (20%), Positives = 134/287 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G++++ KV + + G +GYGF+ F S A ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG + N ++ + + S + + + + T +++ +L ++T+ + F ++
Sbjct: 229 NGMLL-NDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF-GQFGE 286
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
+V D+ + +G+GFV + + +A+ E+N + + +G A K +
Sbjct: 287 ITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE---R 342
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---G 317
++ + Y+ ++ + + +F+ NL V DE L+ FS +G + KI G
Sbjct: 343 EEELRKRYEQMKLEKMNKY-QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG 401
Query: 318 KR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV + A +A+ +N L G+ + ++ + +++Q
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQ 448
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 235 (87.8 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 74/278 (26%), Positives = 139/278 (50%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ + Q G +GY F+ F +++ A+R +
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-GS-KGYAFVHFQNQSAADRAI 212
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + G + F R E R + T +++ + D+ D L++ F ++
Sbjct: 213 EEMNGKLL-KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF-SK 270
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D +G++KG+GFV F +A+ EMNG + + + +G A +K V
Sbjct: 271 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA--QKKV 327
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + K ++ + + +++ NLD + DE LR FS +G + VK+
Sbjct: 328 ERQAEL-KQMFEQLK-RERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE 385
Query: 316 AGKRCGF--VQFADRSCAEEALRMLNGTQLGGQNIRLS 351
G+ GF + F+ A +A+ +NG LG + + ++
Sbjct: 386 EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 423
Score = 202 (76.2 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 72/283 (25%), Positives = 131/283 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V+++++ R++ T + GY ++ F+ A A++ L T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A +R + +F+ +L + + L E F A +
Sbjct: 129 MN-FDIIKGK-SIRLMWSQRDAYLRRSGIGN--VFIKNLDKSIDNKTLYEHFSA-FGKIL 183
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+KV+ D G +KGY FV F ++S RA+ EMNG + +G N+K + +
Sbjct: 184 SSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 241
Query: 263 YPKASYQNSQVAQ--SD-DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ + N + D DD VF ++ ++ + G+ K
Sbjct: 242 SKASEFTNVYIKNFGGDMDDERLKDVF-SKYGKTLS---VKVMTDSSGK--------SKG 289
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG + GQ I + + +QA+
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 143 (55.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + +G+ +G+GF+ F S A++
Sbjct: 246 EFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKA 304
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRD---DTPDHTIFVGDLAADVT 186
++ NG + NG+ F R E KR+ +++ +L +
Sbjct: 305 VEEMNGRDI-NGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTID 363
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L+ F + + S KV+ + G++KG+G + F + +AMTEMNG ++P+
Sbjct: 364 DEKLRNEFSS-FGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
Query: 247 RIGPA 251
I A
Sbjct: 421 SIALA 425
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 238 (88.8 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 76/288 (26%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D TG++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 YGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRRFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 195 (73.7 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 67/280 (23%), Positives = 128/280 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
+ N + DD ++ L + + ++ + L + ++ K GF
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDE-----RLKELFS-KYGKTLSVK---VMTDPTGKSKGFGF 235
Query: 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
V F A +A+ +NG + G+ + + + +QA+
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 163 (62.4 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 53/189 (28%), Positives = 93/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G+ ++VKV+ + TG+ +G+GF+ F A +
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + NG+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKDI-NGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 238 (88.8 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 85/335 (25%), Positives = 155/335 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEEAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ +L D+ D LQ+ F +R
Sbjct: 156 EKMNGMFL-NDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLF-SR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--K 255
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A K +
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVER 272
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPN----NTTVFVGNLDSIVTDEHLRELFSQYGQLVH 311
+ ++ + ++ Q D + ++V NLD + DE LR+ FS +G +
Sbjct: 273 QTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 332
Query: 312 VKIPA-GKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 367
K+ G R GFV F+ A +A+ +NG + + + ++ + +QA NQ
Sbjct: 333 AKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLS-NQ 391
Query: 368 W-----------NAGYYGY--AQGYENYGYAAAAP 389
+ N G + AQG Y A AP
Sbjct: 392 YMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAP 426
Score = 201 (75.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 70/283 (24%), Positives = 129/283 (45%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R++ T + GY + F AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + G+ R+ W+ ++ + IFV +L + L +TF A + +
Sbjct: 70 DTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDRSIDSKTLYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D G +KGYGFV F + E RA+ +MNG+F + R + +G +++ +
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDE-HLRELFSQYGQLVHVKIPAGKR 319
+ N + +D ++ + +L S ++ + + G+ K
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERL--QDLFSRFGPALSVKVMTDESGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A +A+ +NG L G+ I + + +Q +
Sbjct: 233 FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 234 (87.4 bits), Expect = 5.9e-19, P = 5.9e-19
Identities = 68/223 (30%), Positives = 109/223 (48%)
Query: 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
+ D P T+FVG+L+ +V D ML E F+ T A+V+ DR +GR+KG+G+V F
Sbjct: 233 EESDKPS-TLFVGNLSWNVDDAMLAEEFKFCGTVTS-ARVITDRESGRSKGFGYVDFATP 290
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
E +A E G F R +++ +T K T S +A V+ P + T+F
Sbjct: 291 EEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVS-----PESDTLF 345
Query: 287 VGNLDSIVTDEHLRELFSQYGQLVHVKIP----AGKRCGF--VQFADRSCAEEALRMLNG 340
VGNL ++ + FS+ ++ +++P +G+R GF V F A+ A LNG
Sbjct: 346 VGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Query: 341 TQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYG 383
+ G+N RL + + P P + + G+ G G +G
Sbjct: 406 QSINGRNCRLDY--------STPRPPREDGGFGGRGGGRGGFG 440
Score = 157 (60.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/181 (26%), Positives = 91/181 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TL++G+L + +D+ L F G V + +VI ++++G+ +G+G+++F + AE+
Sbjct: 240 TLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGE 299
Query: 143 FNGTPMPNGE--QNFRLNWAS-----FGAGEKR-DDT--PDH-TIFVGDLAADVTDYMLQ 191
G + E +F A+ GA K+ DT P+ T+FVG+L D + +
Sbjct: 300 KQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVG 359
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
F + K ++ ++ +GR KG+G+V F + A ++NG + R R+ +
Sbjct: 360 AFF-SEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 252 T 252
T
Sbjct: 419 T 419
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 231 (86.4 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 74/275 (26%), Positives = 132/275 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L +D L F+ G+V++ KV R+ +G +GYGF++F S
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 144 NGTPMPNGEQNFRL-NWASFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
NGT + N Q+ + + S G +K R T ++V +L TD L+ F +
Sbjct: 92 NGTLIRN--QHIHVCPFVSRGQWDKSRVFT---NVYVKNLVETATDADLKRLF-GEFGEI 145
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A V+ D G+++ +GFV F + A+ +MNGV + + +G A K + +
Sbjct: 146 TSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK---TNRT 201
Query: 262 QYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----- 316
+ KA ++ ++ + ++V NLD V + L ELFS++G + K+
Sbjct: 202 EDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGI 261
Query: 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLS 351
K GFV+F+ A +A+ +NG +G + I +S
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 50/189 (26%), Positives = 83/189 (43%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+FV +L + + L + F A + KV D +G +KGYGFV+F + A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSA-FGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNF 90
Query: 236 MNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVT 295
NG + + + P ++ GQ + S+V T V+V NL T
Sbjct: 91 HNGTLIRNQHIHVCPFVSR----GQ-------WDKSRVF--------TNVYVKNLVETAT 131
Query: 296 DEHLRELFSQYGQL---VHVKIPAGK--RCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
D L+ LF ++G++ V +K GK R GFV F A A+ +NG + + + +
Sbjct: 132 DADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
Query: 351 SWGRSPSNK 359
+ +N+
Sbjct: 192 GRAQRKTNR 200
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 232 (86.7 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 73/291 (25%), Positives = 144/291 (49%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L+ F+ G +++ KV + +GQ +GYGF+++ + A+ +
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI 190
Query: 141 QTFNGTPMPNGEQ----NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
NG + N +Q F +GEK T ++V +L+ ++D L + F
Sbjct: 191 DKLNGMLL-NDKQVYVGPFVHKLQRDPSGEKVKFT---NVYVKNLSESLSDEELNKVF-G 245
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
+ T ++ D G++KG+GFV F + + RA+ +NG + +G A K
Sbjct: 246 EFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK-- 302
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-- 314
S ++ K ++ S + ++ D + ++V NLD VTD+ LRE F+ +G + K+
Sbjct: 303 -SERETELKQKFEQS-LKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR 360
Query: 315 -PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
P+G + GFV F+ A A+ +NG + + + ++ + +++A+
Sbjct: 361 DPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Score = 201 (75.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 57/203 (28%), Positives = 107/203 (52%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + ++ L F G+VV+V+V R+ T + GYG++ + + A R L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ ++ ++ + IF+ +L + L ETF A P
Sbjct: 106 LNFMAL-NGRA-IRVMYSVRDPSLRKSGVGN--IFIKNLDKSIDHKALHETFSAFGPILS 161
Query: 203 GAKVVIDRLTGRTKGYGFVRFG-DESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTVSG 259
KV +D +G++KGYGFV++ DE+ Q A+ ++NG+ + + + +GP +K + SG
Sbjct: 162 -CKVAVDP-SGQSKGYGFVQYDTDEAAQ-GAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG 218
Query: 260 QQ-QYPKASYQNSQVAQSDDDPN 281
++ ++ +N + SD++ N
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELN 241
Score = 118 (46.6 bits), Expect = 0.00055, P = 0.00055
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 283 TTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKRC---GFVQFADRSCAEEALR 336
T+++VG+LD+ VTD L E F+Q GQ+V V++ +R G+V +A A AL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 337 MLNGTQLGGQNIRLSWG-RSPSNKQA 361
LN L G+ IR+ + R PS +++
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKS 130
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 231 (86.4 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A+R +
Sbjct: 99 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQDAADRAI 156
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 157 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFD-K 214
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y T KV+ D TG+++G+GFV + + +A+ EMNG + + + +G A +K +
Sbjct: 215 YGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA--QKKM 271
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 272 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 329
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 330 EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 377
Score = 210 (79.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 68/280 (24%), Positives = 130/280 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 73 MN-FDVVKGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 127
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 128 SCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMG 185
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
+ N + DD ++ L + D++ + L + ++ + GF
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQ-----RLKELF-DKYGKTLSVK---VMTDPTGKSRGFGF 236
Query: 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
V + A +A+ +NGT+L G+ + + + +QA+
Sbjct: 237 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 276
Score = 164 (62.8 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G+ ++VKV+ + TG+ G+GF+ + A +
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKA 248
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NGT + NG+ F R E KR + I ++ +L +
Sbjct: 249 VEEMNGTEL-NGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 307
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 DEKLRKEF-SPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 365 YVALAQRKE 373
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 230 (86.0 bits), Expect = 9.8e-18, P = 9.8e-18
Identities = 76/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 91
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 92 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 149
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 150 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 206
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 207 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 264
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 265 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 312
Score = 180 (68.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 64/234 (27%), Positives = 109/234 (46%)
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
AER L T N + G+ R+ W+ ++ + IF+ +L + + L +TF
Sbjct: 1 AERALDTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFS 56
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 57 A-FGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 113
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI- 314
+ + N V++ N + DE L+ELF ++G + VK+
Sbjct: 114 EREAELGARAKEFTN--------------VYIKNFGEDMDDERLKELFGKFGPALSVKVM 159
Query: 315 --PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
+GK GFV F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 160 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 211
Score = 165 (63.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 183
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 184 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 242
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 243 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 300 YVALAQRKE 308
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 192 (72.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 48/182 (26%), Positives = 91/182 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 45 MSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQS-- 102
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A D D +++ L +T ++E F RY ++V++D+ +
Sbjct: 103 KTIKVSYAR----PSSDSIKDANLYISGLPKTMTQKDVEEMF-GRYGRIINSRVLVDQAS 157
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G F+RF +E A+ ++NG + M + A + V Q P+ +Q
Sbjct: 158 GLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVIPQVYHQQ 217
Query: 271 SQ 272
S+
Sbjct: 218 SR 219
Score = 86 (35.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ +G G FI F RA AE ++
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 182 NGQKPPGAAEQMTVKFAA 199
Score = 86 (35.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 145 GTPMPNGEQNFRLNWASFG--AGEKRDDTPDHT-----IFVGDLAADVTDYMLQETFRAR 197
G P+ + Q FR + S +G + P ++ IF+ +L D + +L + F
Sbjct: 222 GGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMF-GP 280
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + KV+ D T + KG+GFV E A+ +NG + +++ T+K
Sbjct: 281 FGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVSFKTSK 337
Score = 77 (32.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV A A+ L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S S+K
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 230 (86.0 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 75/288 (26%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIF-SK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y + +V+ D G+++G+GFV F + RA+ EMNG + + + +G A +K V
Sbjct: 214 YGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRMTRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 202 (76.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 71/285 (24%), Positives = 128/285 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
+ N + + DD +F GN SI R + + G+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSI------RVMTDENGK--------S 230
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ GFV F A+ A+ +NG ++ G+ I + + +Q +
Sbjct: 231 RGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Score = 164 (62.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 52/189 (27%), Positives = 93/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++++V+ + + G+ G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV++D GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 230 (86.0 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 76/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 230 (86.0 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 76/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 230 (86.0 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 79/288 (27%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ + + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F +R
Sbjct: 156 TTMNGMLL-NDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLF-SR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F E +A+ +MNG S R + +G A +K V
Sbjct: 214 FGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA--QKRV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + N ++V NLD + DE LR+ FS YG + K+
Sbjct: 271 ERQSELKRRFEQLKQDRLTRYQGVN--LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG LG + + ++ + ++A
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKA 376
Score = 182 (69.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 66/284 (23%), Positives = 126/284 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R G+GFV F +A+T MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVE 182
Query: 261 QQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ N V D D +++ + +R+ G H +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD---DSG---H-----SR 231
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG ++ G+ + + + +Q++
Sbjct: 232 GFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSE 275
Score = 165 (63.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRLNWASFGAGE----KRDDTPDH---TIFVGDLAADVTD 187
+ NG + G R+ S K+D + ++V +L + D
Sbjct: 248 VMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 229 (85.7 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 70/271 (25%), Positives = 135/271 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ +L + + L F G +++ KV+ ++ GQ +G+GF++F + A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPSTK 202
+G+ M G++ F + + D T ++V +L VTD L F ++Y +
Sbjct: 172 HGS-MVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYGTVS 229
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
V+ D + GR++G+GFV F + +AM + G+ ++ + +G A K +++
Sbjct: 230 SVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDE---RRE 285
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-----G 317
K + ++ +A+ + +N ++V NL + + LRE+F YGQ+V K+
Sbjct: 286 MLKQKFSDNFIAKPNMRWSN--LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
K GFV F++ +++A R LNG + G+ I
Sbjct: 344 KGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Score = 169 (64.5 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 67/270 (24%), Positives = 119/270 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ VV+V + RN TG+ Y +I F S A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 143 FNGTPMPNGEQNFRLNWASFG-AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
N + + G+ R+ W+ A +R T ++V +L + +T L+ F + S
Sbjct: 82 LNHSDL-KGKA-MRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMF-CPFGSI 138
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK---TVS 258
KVV + G++KG+GFV+F E + A + ++G + + + NK ++
Sbjct: 139 LSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA 196
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
G Q +N +DD + G + S+V +R+ + +
Sbjct: 197 GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV---MRDGMGR-----------SR 242
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
GFV F + A++A+ L G QLG + +
Sbjct: 243 GFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Score = 137 (53.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 54/213 (25%), Positives = 101/213 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + + L+T F+ G V +V V+R+ G+ G+GF+ F + A++ +++
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESL 262
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRD-------DT----PD---HTIFVGDLAADVTDYM 189
G + G + + A E+R+ D P+ ++V +L+ + +
Sbjct: 263 CGLQL--GSKKLFVGKA-LKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETR 319
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+E F Y AKV+ GR+KG+GFV F + E +A +NG +P+ +
Sbjct: 320 LREIFGC-YGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Query: 250 PATNKKT-VSGQQQYPKASYQNSQVAQSDDDPN 281
A K+ + QQY +A Q Q Q+ P+
Sbjct: 378 VAERKEDRIKRLQQYFQA--QPRQYTQAPSAPS 408
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 225 (84.3 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 69/282 (24%), Positives = 138/282 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
I ++I +L +D L F+ G++++ KV+ +++ G +GYGF+ + + A+R +
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEE-GS-KGYGFVHYQDQRAADRAI 154
Query: 141 QTFNGTPMPNGEQNF-RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARY 198
+ NG + + R E R+ + T +++ + D+ D L+ F ++Y
Sbjct: 155 EEMNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVF-SKY 213
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KT 256
T KV+ D +G++K +GFV F A+ +MNG + + + +G A K +
Sbjct: 214 GQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQ 272
Query: 257 VSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-- 314
++ + + + + Q+ +++ NLD + DE LR+ FS +G + VK+
Sbjct: 273 AELKEMFEQMKKERIRARQA------AKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ 326
Query: 315 PAGKRCGF--VQFADRSCAEEALRMLNGTQLGGQNIRLSWGR 354
AG+ GF + F A +A+ +NG LG + + ++ G+
Sbjct: 327 EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 209 (78.6 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 69/280 (24%), Positives = 133/280 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F G V+++++ R+ + + GYG++ F+ A++ L+T
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ + RL W+ A ++ + +F+ +L + + L E F + +
Sbjct: 71 MN-FDLIKGK-SIRLMWSQRDACLRKSGIGN--VFIKNLDKSIDNKTLYEHF-SPFGKIM 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+KV+ D G +KGYGFV + D+ RA+ EMNG + + ++K + +
Sbjct: 126 SSKVMTDE-EG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGF 322
A + N + DD ++ + L S+ + ++ + L + + K KR GF
Sbjct: 184 EKPAEFTNVYIKNFGDDMDDES-----LRSVFS-KYGQTLSVKVMKDASGK---SKRFGF 234
Query: 323 VQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
V F A+ A+ +NG + GQ I + + +QA+
Sbjct: 235 VSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAE 274
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 45/180 (25%), Positives = 85/180 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L + F+ G+ ++VKV+++ +G+ + +GF+ F S A+
Sbjct: 188 EFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNA 246
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGEKRD---DTPDHTIFVGDLAA----DVTDYML 190
++ NG + NG+ F R E ++ I A ++ D +
Sbjct: 247 VEDMNGRDI-NGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTID 305
Query: 191 QETFRARYPSTKGA--KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
ET R + S G+ +V + + G++KG+G + F +AM EMNG ++P+ I
Sbjct: 306 DETLRKEF-SVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNI 364
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 227 (85.0 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 53 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 110
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 111 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 168
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 169 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 225
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 226 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 283
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 284 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 331
Score = 200 (75.5 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 67/246 (27%), Positives = 115/246 (46%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
GY ++ F A AER L T N + G+ R+ W+ ++ + IF+ +L
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDK 63
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ + L +TF A + + KVV D G +KGYGFV F + RA+ +MNG+ +
Sbjct: 64 SIDNKALYDTFSA-FGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLND 120
Query: 244 RPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELF 303
R + +G ++K + + N V++ N + DE L++LF
Sbjct: 121 RKVFVGRFKSRKEREAELGARAKEFTN--------------VYIKNFGEDMDDERLKDLF 166
Query: 304 SQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN 358
++G + VK+ +GK GFV F A++A+ +NG +L G+ I + GR+
Sbjct: 167 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKK 224
Query: 359 KQAQPD 364
+ Q +
Sbjct: 225 VERQTE 230
Score = 165 (63.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 202
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 203 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 261
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 262 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 318
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 319 YVALAQRKE 327
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 227 (85.0 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 76/288 (26%), Positives = 141/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ + + G+GF+ F + A+ +
Sbjct: 98 VGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQNAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
+T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 RTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F + +A+T+MNG S R + +G A +K V
Sbjct: 214 FGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA--QKRV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + N ++V NLD + DE LR+ F+ YG + K+
Sbjct: 271 ERQNELKRRFEQMKQDRLTRYQGVN--LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 63/268 (23%), Positives = 118/268 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + +F+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--VFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R G+GFV F A+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAE 182
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ N V D + + I++ + +R+ G H +
Sbjct: 183 LGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD---DSG---H-----SR 231
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQ 346
GFV F A++A+ +NG ++ G+
Sbjct: 232 GFGFVNFEKHEDAQKAVTDMNGKEVSGR 259
Score = 171 (65.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 51/188 (27%), Positives = 89/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F A Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-APYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 187 (70.9 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 47/162 (29%), Positives = 86/162 (53%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 75 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 127
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
R+ ++V++D+ TG ++G F+RF SE A+T NG
Sbjct: 128 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 94 (38.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 88 (36.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + R D + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA+ +NG+ ++ +++ A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 88 (36.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 80 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 76 (31.8 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 190 (71.9 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 223 NRRYPGPLAQQAQ 235
Score = 112 (44.5 bits), Expect = 0.00095, P = 0.00095
Identities = 39/131 (29%), Positives = 61/131 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQN--SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQY 306
GP N T +G P N S V + + + T + V L +T E L+ LF
Sbjct: 8 GPTCNN-TANG----PTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 307 GQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSAS 121
Query: 361 AQPDPNQWNAG 371
+ D N + +G
Sbjct: 122 IR-DANLYVSG 131
Score = 100 (40.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 265 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 324 LNGYRLGDRVLQVSFKTNK 342
Score = 93 (37.8 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 77/290 (26%), Positives = 139/290 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F + AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETHEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF-CK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y +V+ D +G++KG+GFV F + RA+ EMNG + + + +G A K
Sbjct: 214 YGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK--- 269
Query: 258 SGQQQYP-KASYQNSQVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI- 314
G++Q K ++ Q+ Q ++V NLD + DE LR+ FS +G + K+
Sbjct: 270 -GERQTELKRKFE--QMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM 326
Query: 315 -PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 327 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 202 (76.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 67/283 (23%), Positives = 125/283 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD +F ++ +R + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL----SIRVMTDDSGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A+ A+ +NG ++ G+ + + + +Q +
Sbjct: 233 FGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Score = 166 (63.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++++V+ + +G+ +G+GF+ F A+R
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGE----------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+Q + G + K+D + ++V +L +
Sbjct: 248 VDEMNGKEM-NGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLD 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS-IRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 227 (85.0 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 203 (76.5 bits), Expect = 9.8e-14, P = 9.8e-14
Identities = 68/282 (24%), Positives = 129/282 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 227 (85.0 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 75/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 192 (72.6 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 46/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N + Q
Sbjct: 191 GMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQ 240
Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
Identities = 37/129 (28%), Positives = 59/129 (45%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP N T G S S + + + + T + V L +T E L+ LF G+
Sbjct: 37 GPTCNN-TAHGSNAINNCS---SPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGE 92
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 93 IESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 151
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 152 -DANLYVSG 159
Score = 100 (40.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 307 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 366 LNGYRLGDRVLQVSFKTNK 384
Score = 94 (38.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 215 NGQKPPAATEPITVKFAN 232
Score = 74 (31.1 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 190 (71.9 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 223 NRRYPGPLAQQAQ 235
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 223 NRRYPGPLAQQAQ 235
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 223 NRRYPGPLAQQAQ 235
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 187 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 244
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 245 MAYGVKRFSPMTIDGMT 261
Score = 74 (31.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 186 (70.5 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 41/146 (28%), Positives = 79/146 (54%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L ++T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRNMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T + LR LFS G++ K+ AG G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 92 (37.4 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 76 (31.8 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 190 (71.9 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 223 NRRYPGPLAQQAQ 235
Score = 100 (40.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 279 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 338 LNGYRLGDRVLQVSFKTNK 356
Score = 93 (37.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 208 (78.3 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 59/193 (30%), Positives = 95/193 (49%)
Query: 204 AKVVIDRLTGRTKGYGFVRFG-DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV--SGQ 260
A+VV D TG++KGYG V F ++ + A+ M G + R ++ AT K S Q
Sbjct: 3 ARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKSTQ 62
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ K V QS N TV+ G + S +TD+ +R+ FS +GQ++ +++ KR
Sbjct: 63 ENNTKQLKFEDVVNQSSS--KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRY 120
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SPSNKQAQPDPNQWNAGYYGYAQGY 379
FV+F+ A A+ + GT + G+ ++ WG+ SP + QW+ YG Q +
Sbjct: 121 SFVRFSTHGSAAHAIVSVTGTTIEGRVVKCYWGKESPDMTENYSRWGQWSQ-VYGDPQEH 179
Query: 380 ENYGYAAAAPQDP 392
+ A Q P
Sbjct: 180 GDLSPVANGWQVP 192
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 226 (84.6 bits), Expect = 7.0e-17, P = 7.0e-17
Identities = 77/288 (26%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV+ ++ + G+GF+ F + A+ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQNAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 STMNGMLL-NDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++G+GFV F E +A+ MNG S R + +G A +K V
Sbjct: 214 FGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA--QKRV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q + N ++V NLD + DE LR+ FS YG + K+
Sbjct: 271 ERQNELKRRFEQMKQDRLTRYQGVN--LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 64/268 (23%), Positives = 118/268 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMNFEVIKG--QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D R G+GFV F A++ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVE 182
Query: 261 QQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ N V D D +++ + +R+ G H +
Sbjct: 183 LGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD---DSG---H-----SR 231
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQ 346
GFV F A++A+ +NG ++ G+
Sbjct: 232 GFGFVNFEKHEEAQKAVVNMNGREVSGR 259
Score = 164 (62.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G G+GF+ F A++
Sbjct: 189 EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 EKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 190 (71.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 55 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 112
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 113 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 167
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 168 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 217
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 116 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 171
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 172 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 217
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 13 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 69
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 70 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 128
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 129 -DANLYVSG 136
Score = 98 (39.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 261 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 320 DEAAMAIASLNGYRLGDRVLQVSFKTNK 347
Score = 89 (36.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 192 NGQK-PSG 198
Score = 73 (30.8 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 226 (84.6 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 77/288 (26%), Positives = 136/288 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y KV+ D G++KG+GFV F + +A+ EMNG + + M +G A +K V
Sbjct: 214 YGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ F +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 205 (77.2 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 67/282 (23%), Positives = 128/282 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + DD N+ + G ++ ++ + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS---VKVMTDDNGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG + G+++ + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 156 (60.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 52/189 (27%), Positives = 91/189 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG M NG+ F R E K+D + ++V +L +
Sbjct: 248 VDEMNGKDM-NGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 187 (70.9 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 47/162 (29%), Positives = 86/162 (53%)
Query: 79 GEI-RT-LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
G+I RT L + L M + L + F+ GEV + K+IR+K G GYGF+ +++ A
Sbjct: 42 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 101
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRA 196
ER + T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 102 ERAINTLNGLRLQS--KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-S 154
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
R+ ++V++D+ TG ++G F+RF SE A+T NG
Sbjct: 155 RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 94 (38.1 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 195 NGHKPPGSSEPITVKFAA 212
Score = 90 (36.7 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 273 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 331
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 332 LNGYRLGDKILQVSFKTNK 350
Score = 88 (36.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + R D + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 37 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 95
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA+ +NG+ ++ +++ A
Sbjct: 96 VTAKDAERAINTLNGLRLQSKTIKVSYA 123
Score = 88 (36.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 107 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 165
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 166 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 218
Score = 76 (31.8 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 185 (70.2 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRSMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T + LR LFS G++ K+ AG G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 95 (38.5 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA+ +NG+ ++ +++ A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 92 (37.4 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + F
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 86 (35.3 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 80 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVL 138
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 76 (31.8 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 190 (71.9 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00022
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 118 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 15 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 131 -DANLYVSG 138
Score = 98 (39.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 190 (71.9 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00022
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 118 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 15 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 131 -DANLYVSG 138
Score = 98 (39.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 276 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 334
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 335 DEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 190 (71.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 43/147 (29%), Positives = 68/147 (46%)
Query: 235 EMNGV--FCSTRPMRI--GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 290
E NG+ ST ++ GP +N T +G + Q + DD + T + V L
Sbjct: 2 EWNGLKMIISTMEPQVSNGPTSN--TSNGPSSNNRNCPSPMQTGATTDD-SKTNLIVNYL 58
Query: 291 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 344
+T E R LF G++ K+ K G FV + D AE+A+ LNG +L
Sbjct: 59 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 118
Query: 345 GQNIRLSWGRSPSNKQAQPDPNQWNAG 371
+ I++S+ R PS+ + D N + +G
Sbjct: 119 TKTIKVSYAR-PSSASIR-DANLYVSG 143
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 123 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 78 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 135
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 136 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 190
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 191 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 250
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 251 NRRYPGPLAQQAQ 263
Score = 113 (44.8 bits), Expect = 0.00089, P = 0.00089
Identities = 47/164 (28%), Positives = 72/164 (43%)
Query: 221 VRFGDESEQLR----AMTEMNGVFCSTRP-MRIGPATNKKTVSGQQQYPKASYQN--SQV 273
VR D + LR A GV + + GP N T +G P N S V
Sbjct: 3 VRLCDVASLLRSGSWAAEPWTGVIAAMETQLSNGPTCNN-TANG----PTTINNNCSSPV 57
Query: 274 AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFAD 327
+ + + T + V L +T E L+ LF G++ K+ K G FV + D
Sbjct: 58 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 117
Query: 328 RSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
AE+A+ LNG +L + I++S+ R PS+ + D N + +G
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-DANLYVSG 159
Score = 96 (38.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 215 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 272
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 273 MAYGVKRFSPMTIDGMT 289
Score = 74 (31.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 111 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 8 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 64
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 123
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 124 -DANLYVSG 131
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
Score = 73 (30.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 111 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 166
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 8 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 64
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 123
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 124 -DANLYVSG 131
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 341
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 342 DEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 187 NGQK-PSG 193
Score = 73 (30.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 251
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 252 NRRYPGPLAQQAQ 264
Score = 96 (38.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/137 (21%), Positives = 57/137 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDD--------TPDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + +P+ + G LA + L
Sbjct: 216 NGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 273
Query: 196 ARYPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 274 MAYGVKRFSPMTIDGMT 290
Score = 74 (31.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 225 (84.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 73/288 (25%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 189 (71.6 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 67/283 (23%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD + +F ++ + +R+ G+ K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRD---PSGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 154 (59.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 60/196 (30%), Positives = 101/196 (51%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
GE L++G+L Y + + L+ F G VV V+++ +K T + G+GF+ S A+
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEK--------RD------DTPDHTIFVGDLAAD 184
+Q FN + + G + ++N+ G + RD D+P H ++ G+L +
Sbjct: 173 AMQMFNSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSP-HKVYAGNLGWN 229
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T L++ F + P GAKV+ +R TGR++G+GF+ F A+ MNGV R
Sbjct: 230 LTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 245 PMRIGPATN--KKTVS 258
+R+ A+ K TVS
Sbjct: 289 ALRLNLASEREKPTVS 304
Score = 142 (55.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 43/183 (23%), Positives = 85/183 (46%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++VG+L +T L + F + ++V D++T R++G+GFV G E AM
Sbjct: 118 LYVGNLPYTITSSELSQIF-GEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 236 MNGVFCSTRPMRIG-PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
N R +++ P + G+ + + +++ + D P+ V+ GNL +
Sbjct: 177 FNSSQIGGRTVKVNFPEVPR---GGENEVMRTKIRDNNRSYVDS-PHK--VYAGNLGWNL 230
Query: 295 TDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNI 348
T + L++ F ++ K+ G+ GF+ F + AL +NG ++ G+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Query: 349 RLS 351
RL+
Sbjct: 291 RLN 293
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 190 (71.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 118 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 15 GPTSN--TSNGPSSNNRNCPSPMQTGATTDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 131 -DANLYVSG 138
Score = 98 (39.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 190 (71.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 114
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 115 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 169
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 118 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 173
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 174 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 15 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 131 -DANLYVSG 138
Score = 98 (39.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 348
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 349 DEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 89 (36.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 194 NGQK-PSG 200
Score = 73 (30.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 190 (71.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 73 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 130
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 131 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 185
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 186 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 235
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 134 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 189
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 190 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 235
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 31 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 87
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 88 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 146
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 147 -DANLYVSG 154
Score = 98 (39.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 292 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 350
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 351 DEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 89 (36.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 210 NGQK-PSG 216
Score = 73 (30.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 184 (69.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T E LR LFS G++ K+ AG G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 97 (39.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA++ +NG+ ++ +++ A
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYA 96
Score = 94 (38.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 88 (36.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 80 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 76 (31.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 184 (69.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T E LR LFS G++ K+ AG G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 97 (39.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA++ +NG+ ++ +++ A
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYA 96
Score = 94 (38.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 90 (36.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 88 (36.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 80 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 76 (31.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 190 (71.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 61 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 118
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 119 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 173
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 174 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 223
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 122 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 177
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 178 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 223
Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
GP +N T +G + Q + DD + T + V L +T E R LF G+
Sbjct: 19 GPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYLPQNMTQEEFRSLFGSIGE 75
Query: 309 LVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+ +
Sbjct: 76 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 134
Query: 363 PDPNQWNAG 371
D N + +G
Sbjct: 135 -DANLYVSG 142
Score = 98 (39.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 294 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 352
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 353 DEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 89 (36.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 198 NGQK-PSG 204
Score = 73 (30.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 190 (71.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 43/147 (29%), Positives = 68/147 (46%)
Query: 235 EMNGV--FCSTRPMRI--GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 290
E NG+ ST ++ GP +N T +G + Q + DD + T + V L
Sbjct: 2 EWNGLKMIISTMEPQVSNGPTSN--TSNGPSSNNRNCPSPMQTGATTDD-SKTNLIVNYL 58
Query: 291 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 344
+T E R LF G++ K+ K G FV + D AE+A+ LNG +L
Sbjct: 59 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 118
Query: 345 GQNIRLSWGRSPSNKQAQPDPNQWNAG 371
+ I++S+ R PS+ + D N + +G
Sbjct: 119 TKTIKVSYAR-PSSASIR-DANLYVSG 143
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 123 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 190 (71.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N S Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 43/147 (29%), Positives = 68/147 (46%)
Query: 235 EMNGV--FCSTRPMRI--GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 290
E NG+ ST ++ GP +N T +G + Q + DD + T + V L
Sbjct: 2 EWNGLKMIISTMEPQVSNGPTSN--TSNGPSSNNRNCPSPMQTGAATDD-SKTNLIVNYL 58
Query: 291 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 344
+T E R LF G++ K+ K G FV + D AE+A+ LNG +L
Sbjct: 59 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 118
Query: 345 GQNIRLSWGRSPSNKQAQPDPNQWNAG 371
+ I++S+ R PS+ + D N + +G
Sbjct: 119 TKTIKVSYAR-PSSASIR-DANLYVSG 143
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 123 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Score = 98 (39.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 353
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 354 DEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 89 (36.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 225 (84.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 73/288 (25%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 138 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 195
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 196 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 253
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 254 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--QKKV 310
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 311 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 368
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 369 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 416
Score = 154 (59.3 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 229 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 287
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 288 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 346
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 347 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 404 YVALAQRKE 412
Score = 153 (58.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 47/163 (28%), Positives = 79/163 (48%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 169 KVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 226
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR-- 319
+ N V++ N V DE L+ELFSQ+G+ + VK+ P+GK
Sbjct: 227 AKEFTN--------------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG 272
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 273 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 315
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 224 (83.9 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 27 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 84
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 85 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 142
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 143 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA--QKKV 199
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 200 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 257
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 258 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 305
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 176
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 177 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 235
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 236 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 292
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 293 YVALAQRKE 301
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 58 KVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 115
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKR-- 319
+ N V++ N V DE+LRELFSQ+G+ + VK+ +GK
Sbjct: 116 AKEFTN--------------VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG 161
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G++I + + +QA+
Sbjct: 162 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 204
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 184 (69.8 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 39 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 96
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F +R+ ++V++D+ T
Sbjct: 97 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTT 151
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 152 GLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T + LR LFS G++ K+ AG G
Sbjct: 13 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 72
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 73 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 120
Score = 95 (38.5 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 18 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNY 76
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA+ +NG+ ++ +++ A
Sbjct: 77 VTAKDAERAINTLNGLRLQSKTIKVSYA 104
Score = 94 (38.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 176 NGHKPPGSSEPITVKFAA 193
Score = 90 (36.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 254 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 312
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 313 LNGYRLGDKILQVSFKTNK 331
Score = 88 (36.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 26/113 (23%), Positives = 59/113 (52%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS++G++++ ++
Sbjct: 88 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 146
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 147 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 199
Score = 76 (31.8 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 224 (83.9 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 200 (75.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 67/283 (23%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD N +F ++ + +R+ + K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGK-----------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G++I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 158 (60.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 224 (83.9 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 73/288 (25%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 68/283 (24%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD N +F ++ + +R+ G+ K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRD---PSGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 154 (59.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG + +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEI-SGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00084, P = 0.00084
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 224 (83.9 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A + +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAANKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 200 (75.5 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 67/283 (23%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD N +F ++ + +R+ + K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELF-SQFGKTLSVKVMRDCSGK-----------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G++I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 51/189 (26%), Positives = 94/189 (49%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
++ NG M +G+ F R E KR + I ++ +L +
Sbjct: 248 VEEMNGKEM-SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 307 DEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00090, P = 0.00089
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 223 (83.6 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 189 (71.6 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 67/283 (23%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD + +F ++ + +R+ G+ K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRD---PNGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 152 (58.6 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00081
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 223 (83.6 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 73/288 (25%), Positives = 139/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A +K V
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 189 (71.6 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 67/283 (23%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD + +F ++ + +R+ G+ K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELF-SQFGKTLSVKVMRD---PNGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 152 (58.6 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 222 (83.2 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 73/285 (25%), Positives = 138/285 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ ++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAIEKM 60
Query: 144 NGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPS 200
NG + N + F R E + T +++ + +V D L+E F +++
Sbjct: 61 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQFGK 118
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
T KV+ D G++KG+GFV + + +A+ EMNG S + + +G A +K V Q
Sbjct: 119 TLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--QKKVERQ 175
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---- 316
+ + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 176 AELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR 233
Query: 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 234 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 278
Score = 152 (58.6 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ G+ +G+GF+ + A +
Sbjct: 91 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKA 149
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 150 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 209
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 210 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 266
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 267 VALAQRKE 274
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 47/163 (28%), Positives = 78/163 (47%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 31 KVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 88
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR-- 319
+ N V++ N V DE L+ELFSQ+G+ + VK+ P GK
Sbjct: 89 AKEFTN--------------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG 134
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 135 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 177
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 188 (71.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 54/192 (28%), Positives = 92/192 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L + L M + + + F GEV + K+IR+K TGQ GYGF+ ++ + AE+ +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
NG + N + +++ A + ++V L ++T L+ F + Y
Sbjct: 172 NGLRLQN--KTIKVSIAR----PSSESIKGANLYVSGLPKNMTQSDLESLF-SPYGKIIT 224
Query: 204 AKVVIDRLTGR-----TKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKT 256
++++ D +TG +KG GF+RF E RA+ E+NG ST P+ + A N +
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSS 284
Query: 257 VSGQQQYPKASY 268
Q P A+Y
Sbjct: 285 NKNSMQ-PLAAY 295
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 51/219 (23%), Positives = 101/219 (46%)
Query: 150 NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID 209
N N N A+ + P + V L ++ ++ F + + K++ D
Sbjct: 86 NNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLF-VSFGEVESCKLIRD 144
Query: 210 RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT-NKKTVSGQQQYPKASY 268
++TG++ GYGFV + + + +A+ +NG+ + +++ A + +++ G Y
Sbjct: 145 KVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLP 204
Query: 269 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADR 328
+N + QSD + ++F I+T L + + G+ H K GF++F R
Sbjct: 205 KN--MTQSDLE----SLF-SPYGKIITSRILCDNIT--GE--HAA-GLSKGVGFIRFDQR 252
Query: 329 SCAEEALRMLNGT--QLGGQNIRLSWGRSPS-NKQA-QP 363
A+ A++ LNGT + + I + + +PS NK + QP
Sbjct: 253 FEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQP 291
Score = 76 (31.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + VK+ +C GFV + A A++ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 339 NGTQLGGQNIRLSWGRSPSNKQ 360
NG LG + +++S+ ++ NKQ
Sbjct: 423 NGYTLGNRVLQVSF-KTNKNKQ 443
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 187 (70.9 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 47/170 (27%), Positives = 87/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 119
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 120 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 174
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S T P+ + A N + Q
Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 122 (48.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 43/147 (29%), Positives = 68/147 (46%)
Query: 235 EMNGV--FCSTRPMRI--GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNL 290
E NG+ ST ++ GP +N T +G + Q + DD + T + V L
Sbjct: 2 EWNGLKMIISTMEPQVSNGPTSN--TTNGPSSNSRNCPSPMQTGAATDD-SKTNLIVNYL 58
Query: 291 DSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLG 344
+T E R LF G++ K+ K G FV + D AE+A+ LNG +L
Sbjct: 59 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 118
Query: 345 GQNIRLSWGRSPSNKQAQPDPNQWNAG 371
+ I++S+ R PS+ + D N + +G
Sbjct: 119 TKTIKVSYAR-PSSASIR-DANLYVSG 143
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 123 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 178
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 179 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQ 224
Score = 98 (39.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 281 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 339
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 340 DEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 199 NGQK-PSG 205
Score = 73 (30.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 221 (82.9 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 72/288 (25%), Positives = 140/288 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GY F+ F ++ A++ +
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYAFVHFETQEAADKAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + +V D L+E F ++
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T KV+ D +G++KG+GFV + + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q S N +++ NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQAELKRKFEQLKQERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKA 376
Score = 192 (72.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 68/283 (24%), Positives = 129/283 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G V++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-IRIMWSQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGY FV F + +A+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQV---AQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
+ N + + DD N +F ++ + +R+ G+ K
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELF-SQFGKTLSVKVMRD---PSGK--------SKG 232
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV + A +A+ +NG ++ G+ I + + +QA+
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 153 (58.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 47/188 (25%), Positives = 92/188 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D+ L F+ G+ ++VKV+R+ +G+ +G+GF+ + A +
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKA 247
Query: 140 LQTFNGTPMPN-----G------EQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTD 187
++ NG + G E+ L ++R +++ +L + D
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + + S AKV+++ GR+KG+GFV F E +A+TEMNG ++P+
Sbjct: 308 EKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL +DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN +P+RI
Sbjct: 68 ALDTMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 220 (82.5 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 67/267 (25%), Positives = 127/267 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I ++ +D L F+ G +++ KV+ + + G +GYGF+ F ++ A R +
Sbjct: 98 VGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
+T NG + N + F ++ S E + T +++ + D+ L+ F
Sbjct: 156 ETMNGMLL-NDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIF-TE 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ T V+ D GR++G+GFV F + + RA+TEMNG + R + +G A +
Sbjct: 214 FGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLER 272
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
G+ + + ++ + ++V NLD + DE LR+ F+ YG + K+
Sbjct: 273 QGELKRKFEQIKQERIQRYQ----GVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNG 340
+ GFV F+ A +A+ +NG
Sbjct: 329 GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Score = 200 (75.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 67/282 (23%), Positives = 129/282 (45%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G++++++V R+ T + GY +I F A AE L
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N + + R+ W+ G ++ + IF+ ++ + + L +TF A + +
Sbjct: 70 DTMNYEVIKG--RPIRIMWSQRDPGLRKSGVGN--IFIKNMDESIDNKALYDTFSA-FGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KVV D G +KGYGFV F + RA+ MNG+ + R + +G ++K +
Sbjct: 125 ILSCKVVCDE-NG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAE 182
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ L +I T+ + S ++ + +
Sbjct: 183 MGAKAVEFTNVYIKNFGEDIDSE-----KLKNIFTE--FGKTLSVC--VMTDERGRSRGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F + A A+ +NG +L G+ + + + +Q +
Sbjct: 234 GFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGE 275
Score = 163 (62.4 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 54/189 (28%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + +D L F G+ ++V V+ +++ G+ G+GF+ F++ A R
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE-KR--DDTPDHTI--------FVGDLAADVT 186
+ NG + NG + R GE KR + I +V +L +
Sbjct: 248 VTEMNGKEL-NGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F A Y + AKV+ D G ++G+GFV F E +A+TEMNG ST+P+
Sbjct: 307 DEKLRKEF-APYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 216 (81.1 bits), Expect = 7.9e-16, P = 7.9e-16
Identities = 67/225 (29%), Positives = 117/225 (52%)
Query: 166 EKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
+K ++T + TIFVG L+ + D L++ F GA+V+ +R T R++GYG+V F
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTT 284
++S +A+ EM G RP+ +T+K +G K + + +P++T
Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSKP--AGNNDRAK------KFGDTPSEPSDT- 268
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG------KRCGFVQFADRSCAEEALRML 338
+F+GNL + + ELF+++G++V V+IP K G+VQF++ A++AL L
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 339 NGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYG 383
G + + +RL + + P PN N G G ++G+ G
Sbjct: 329 QGEYIDNRPVRLDF--------SSPRPN--NDGGRGGSRGFGGRG 363
Score = 190 (71.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 47/177 (26%), Positives = 92/177 (51%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F H G V+ +VI + T + GYG+++F +++ AE+
Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAG-----EKRDDTPDH---TIFVGDLAADVTDYMLQ 191
+Q G + N ++ S AG +K DTP T+F+G+L+ + +
Sbjct: 226 IQEMQGKEIDGRPINCDMS-TSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
E F A++ ++ T + KG+G+V+F + + +A+ + G + RP+R+
Sbjct: 285 ELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRL 340
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 183 (69.5 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 46/170 (27%), Positives = 88/170 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ ++ AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F +++ +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQFGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG +T P+ + A N S Q
Sbjct: 192 GVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQ 241
Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/135 (21%), Positives = 54/135 (40%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTI------FVGDLAADVTDYMLQETFRAR 197
NG P + + +A+ + + H + G LA + L
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 275
Query: 198 YPSTKGAKVVIDRLT 212
Y + + + ID +T
Sbjct: 276 YGVKRFSPMTIDGVT 290
Score = 74 (31.1 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 190 (71.9 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 54/193 (27%), Positives = 98/193 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 79 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 136
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 137 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 191
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRI----GPA--TNKKTVSGQQQYP 264
G ++G GF+RF E A+ +NG +T P+ + P+ TN+ +S Q P
Sbjct: 192 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 251
Query: 265 KASYQN--SQVAQ 275
Y +Q AQ
Sbjct: 252 NRRYPGPLAQQAQ 264
Score = 93 (37.8 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 216 NGQKPPGATEPITVKFAN 233
Score = 92 (37.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 308 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 367 LNGYRLGDRVLQVFK-TNK 384
Score = 65 (27.9 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 339 NGTQLGGQNIRL 350
NG +LG + +++
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 218 (81.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 74/288 (25%), Positives = 138/288 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
NG + N + F R E + T +++ + D+ D L+E F +
Sbjct: 156 DKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWF-GQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
Y + KV+ D G+++G+GFV F + +A+ +MNG + + + +G A +K V
Sbjct: 214 YGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ F+ +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME 328
Query: 316 AG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G K GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 329 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 376
Score = 200 (75.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 67/282 (23%), Positives = 131/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + + G + ++ ++ + +G+ +
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS---VKVMTDDHGK--------SRGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 53/189 (28%), Positives = 90/189 (47%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + G+ G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+ F R E K+D + ++V +L +
Sbjct: 248 VDDMNGKDL-NGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + S AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 176 (67.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 39/146 (26%), Positives = 77/146 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GE+ + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + + ++V++D+ T
Sbjct: 89 KTIKVSYAR----PSSEVIKDANLYISGLPRTMTQKDVEDMF-SPFGRIINSRVLVDQTT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+T NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 268 YQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG-- 321
Y++ DD T + V L +T E LR LFS G++ K+ AG G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYG 64
Query: 322 FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
FV + AE A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSEVIK-DANLYISG 112
Score = 95 (38.5 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
A + RDD + V L ++T L+ F + + AK++ D++ G + GYGFV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSS-IGEIESAKLIRDKVAGHSLGYGFVNY 68
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ RA+ +NG+ ++ +++ A
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 92 (37.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F+ G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 89 (36.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ TNK
Sbjct: 305 LNGYRLGDKILQVSFKTNK 323
Score = 86 (35.3 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 26/113 (23%), Positives = 58/113 (51%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S + + +++ L +T + + ++FS +G++++ ++
Sbjct: 80 TLNGLRLQSK-TIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVL 138
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
+ G F++F RS AEEA+ NG + G + I + + +P+ NK
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 77 (32.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + S+K
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 183 (69.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 46/170 (27%), Positives = 86/170 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 99 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 156
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 157 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 211
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQ 260
G ++G GF+RF E A+ +NG S P+ + A N + Q
Sbjct: 212 GGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQ 261
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 39/145 (26%), Positives = 67/145 (46%)
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
+T+ + + P ++ N T +G ++ Q S+DD + T + V L
Sbjct: 40 LTQPKMIISNMEP-QVTNGPNSATANGPSSNSRSCPSPMQTGGSNDD-SKTNLIVNYLPQ 97
Query: 293 IVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQ 346
+T E R LF G++ K+ K G FV + D AE+A+ LNG +L +
Sbjct: 98 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 157
Query: 347 NIRLSWGRSPSNKQAQPDPNQWNAG 371
I++S+ R PS+ + D N + +G
Sbjct: 158 TIKVSYAR-PSSASIR-DANLYVSG 180
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 37/106 (34%), Positives = 56/106 (52%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-----PAGKR 319
K SY A S D N ++V L +T + L +LFSQYG+++ +I G R
Sbjct: 160 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSR 215
Query: 320 -CGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSPSNKQAQ 362
GF++F R AEEA++ LNG + G + I + + +PS K +Q
Sbjct: 216 GVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQ 261
Score = 98 (39.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 172 PDHT-----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
P HT IFV +L+ D + +L + F + + KV+ D T + KG+GFV +
Sbjct: 318 PGHTGTGWCIFVYNLSPDSDESVLWQLF-GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 376
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNK 254
E A+ +NG R +++ TNK
Sbjct: 377 DEAAMAIASLNGYRLGDRVLQVSFKTNK 404
Score = 89 (36.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 144 NGTPMPNG 151
NG P+G
Sbjct: 236 NGQK-PSG 242
Score = 73 (30.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 217 (81.4 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 70/265 (26%), Positives = 130/265 (49%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS---- 161
G +++ V+ + + G +GYGF+ F + AER ++ NG + NG + F + S
Sbjct: 123 GNILSCNVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGMLL-NGRKVFVGQFKSRKER 179
Query: 162 -FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
G + + P+ +++ + D+ D L++ F ++ KV+ D +G++KG+GF
Sbjct: 180 EAELGARAKEFPN--VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGF 235
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDP 280
V F + +A+ EMNG + + + +G A +K V Q + + Q Q +
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKVERQTELKRTFEQMKQDRITRYQV 293
Query: 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALR 336
N ++V NLD + DE LR+ FS +G + K+ G K GFV F+ A +A+
Sbjct: 294 VN--LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 337 MLNGTQLGGQNIRLSWGRSPSNKQA 361
+NG + + + ++ + +QA
Sbjct: 352 EMNGRIVATKPLYVALAQRKEERQA 376
Score = 179 (68.1 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 66/285 (23%), Positives = 126/285 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+ T Y ++ F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IFV +L + + L +T A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-- 260
VV D G +KGYGFV F RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184
Query: 261 ---QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
+++P +N + DD +F G ++ ++ + + G+
Sbjct: 185 ARAKEFPNVYIKN--FGEDMDDERLKDLF-GKFGPALS---VKVMTDESGK--------S 230
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 165 (63.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDHTI---FVGDLAADVT 186
+ NG + NG+Q + R E K+D + + +V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 364 YVALAQRKE 372
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 61/215 (28%), Positives = 106/215 (49%)
Query: 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218
+A +++ + D +FVG+L +V L + F + + + +V+ D++TGR++G+
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGF 134
Query: 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRI--GPATNKKTVSGQQQYPKASYQNSQVAQS 276
GFV SE A + NG RP+R+ GP K+ G + P++S+ +S
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE-DGFSRGPRSSFGSSGSGYG 193
Query: 277 DDDPNNT----TVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAG--KRCGFVQFA 326
+ V+VGNL V D L LFS+ G++V ++ +G K GFV +
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 327 DRSCAEEALRMLNGTQLGGQNIRLSWGRS-PSNKQ 360
+ A++ L+G L G+ IR+S + P +Q
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQ 288
Score = 119 (46.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 35/122 (28%), Positives = 58/122 (47%)
Query: 138 RVLQTFNGTPMPNGEQNF----RLNWAS----FGAGEKRDDTPDHTIFVGDLAADVTDYM 189
R L+ G P P E F R ++ S +G G + ++VG+L+ V D
Sbjct: 160 RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMA 219
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+ F + + A+V+ DR +GR+KG+GFV + E A+ ++G R +R+
Sbjct: 220 LESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Query: 250 PA 251
A
Sbjct: 279 EA 280
Score = 104 (41.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L + +D L F G V V+VI +K TG+ G+GF+ S + E Q F
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 144 NG 145
NG
Sbjct: 153 NG 154
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 170 (64.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 39/146 (26%), Positives = 75/146 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSFAR----PSSETIKDANLYISGLPRTMTQKDVEDMFLP-FGHIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+ NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 42/183 (22%), Positives = 88/183 (48%)
Query: 189 MLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
M Q+ R+ + S + AK++ D++ G + GYGFV + + + RA+ +NG
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG------- 83
Query: 246 MRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQ 305
+R+ KT+ K S+ +++ D N +++ L +T + + ++F
Sbjct: 84 LRL----QSKTI-------KVSFARPS-SETIKDAN---LYISGLPRTMTQKDVEDMFLP 128
Query: 306 YGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS 357
+G +++ ++ + G F++F RS AEEA+ NG + G + I + + +P+
Sbjct: 129 FGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPN 188
Query: 358 NKQ 360
+
Sbjct: 189 QSK 191
Score = 113 (44.8 bits), Expect = 0.00065, P = 0.00065
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKRCG--FVQFADRSCA 331
DD T + V L +T + LR LFS G++ K+ AG G FV + + A
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 332 EEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAG 371
E A+ LNG +L + I++S+ R PS++ + D N + +G
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFAR-PSSETIK-DANLYISG 112
Score = 97 (39.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
RDD + V L ++T L+ F + + AK++ D++ G + GYGFV + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYLNAK 72
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPAT-NKKTVSGQQQY 263
+ RA+ +NG+ ++ +++ A + +T+ Y
Sbjct: 73 DAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLY 109
Score = 90 (36.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 87 (35.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVSFKTSK 323
Score = 82 (33.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S S+K
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 195 (73.7 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 58/195 (29%), Positives = 97/195 (49%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 3 DEMPK-TLYVGNLSRDVTEALILQLFSQIGPC-KNCKMIMD--TAGNDPYCFVEFHEHRH 58
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
A+ MNG + +++ AT T S Q K +S V + ++ VFVG
Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWAT---TPSSQ----KKDTSSSTVVSTQRSQDHFHVFVG 111
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQ 342
+L +T E ++ F+ +G++ ++ GK GFV F ++ AE A++ + G
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 171
Query: 343 LGGQNIRLSWG-RSP 356
LGG+ IR +W R P
Sbjct: 172 LGGRQIRTNWATRKP 186
Score = 189 (71.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 58/199 (29%), Positives = 97/199 (48%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DHT-IFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQ 269
AT K PK++Y+
Sbjct: 182 ATRKPPA------PKSTYE 194
Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 278 DDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAE 332
+D T++VGNL VT+ + +LFSQ G + K+ AG C FV+F + A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAA 60
Query: 333 EALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
AL +NG ++ G+ ++++W +PS+++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQK 88
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 177 (67.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 46/164 (28%), Positives = 86/164 (52%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151
M + L + F GE+ + K++R+K T GQ GYGF+ +I AE+ + T NG +
Sbjct: 77 MTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT- 135
Query: 152 EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
+ ++++A + RD ++V L +T L++ F ++Y +++++D++
Sbjct: 136 -KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQV 189
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATN 253
TG ++G GF+RF E A+ +NG +T P+ + A N
Sbjct: 190 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233
Score = 123 (48.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 38/127 (29%), Positives = 62/127 (48%)
Query: 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQ--- 308
+N T + P +S V ++ + + T + V L +T E L+ LF G+
Sbjct: 35 SNGPTCNNTANCPNTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES 94
Query: 309 --LVHVKIPAGKRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
LV KI G+ G FV + D AE+A+ LNG +L + I++S+ R PS+ + D
Sbjct: 95 CKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR-D 152
Query: 365 PNQWNAG 371
N + +G
Sbjct: 153 ANLYVSG 159
Score = 95 (38.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 32/139 (23%), Positives = 57/139 (41%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDT--------PDHTIFVGDLAADVTDYMLQETFR 195
NG P + + +A+ +K + T P+ + G LA + L
Sbjct: 215 NGQKPPGATEPITVKFAN-NPSQKVNHTILSQLYQSPNRR-YPGPLAQQAQRFRLDNLLN 272
Query: 196 ARYPSTKG--AKVVIDRLT 212
Y K + + ID +T
Sbjct: 273 MAYGGIKSRFSPMAIDGMT 291
Score = 77 (32.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S ++K
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 173 (66.0 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 44/181 (24%), Positives = 91/181 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ + YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 91 (37.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 287 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 345
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 346 LNGYRLGERVLQVSFKTSKQ 365
Score = 85 (35.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 215 (80.7 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 65/287 (22%), Positives = 139/287 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L+ +D L F+ G +++ KV K G +GYG++ F + AE+ +
Sbjct: 273 VGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAI 330
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
+ NGT + G+ +N F + +R ++ +F + +T +LQ+ R+
Sbjct: 331 EKVNGT-LILGKP---INVERFVSKVERYKV-ENKVFFRNADESITIEILQQELSNRFGE 385
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
+ ++ + G++KG G V F ++ + + +TE + ST ++N T+
Sbjct: 386 IESC-ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEIN 444
Query: 261 QQYPKASYQNSQVAQSDDDPNNTT---VFVGNLDSIVTDEHLRELFSQYGQLVHVKI--- 314
+ S+V + + TT +F+ N+D + + ++E F+++G ++ +KI
Sbjct: 445 GKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQD 504
Query: 315 --PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
K GF+ F++ A++AL LNG G + I++S+ +N+
Sbjct: 505 ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 183 (69.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 51/171 (29%), Positives = 89/171 (52%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAE 137
++ +L++GDL ++E LN F+ G + ++ V R+ T + GY ++ F + AE
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R L T N T + +G+ R+ W S+ KR T IFV +L V + ML +TF +
Sbjct: 242 RALDTLNYT-LVHGKP-CRIMW-SYRDPTKRK-TNVGNIFVKNLEKGVDNAMLYDTFSS- 296
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
+ + KV ++ G +KGYG+V F +A+ ++NG +P+ +
Sbjct: 297 FGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 41 (19.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFV 287
NK+ +G+ P+ Y N+ + ++++ NNTT V
Sbjct: 690 NKRVPNGK---PR--YNNNNNSSNNNNNNNTTTNV 719
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 171 (65.3 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 42/171 (24%), Positives = 88/171 (51%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F GE+ + K++R+K TGQ GYGF+ ++ A++ + T NG +
Sbjct: 49 MTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQT-- 106
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 107 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKDMEQLF-SQYGRIITSRILVDQVT 161
Query: 213 -GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQ 260
G ++G GF+RF +E A+ +NG + P+ + A N +GQ
Sbjct: 162 AGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI-----PAG-- 317
K SY A S D N ++V L ++ + + +LFSQYG+++ +I AG
Sbjct: 110 KVSYARPSSA-SIRDAN---LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGIS 165
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQ-LGG-QNIRLSWGRSPSNKQAQ 362
+ GF++F R+ AEEA++ LNG + LG + I + + +PS K Q
Sbjct: 166 RGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 80 (33.2 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 152 (58.6 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 55/203 (27%), Positives = 99/203 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
+TG +KG G+VR+ S+ +A+ + F R + P NK + S +Q Y Y N
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RAILAEPK-NKASESSEQDY----YSN 207
Query: 271 SQVAQSDDDPN-NTTVFVGNLDS 292
+ +P N FVG S
Sbjct: 208 MRQEALGHEPRVNMFPFVGEQQS 230
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 48/173 (27%), Positives = 81/173 (46%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
RAM EM+G C +GP + K + ++S + V +D T +FV
Sbjct: 79 ACRAMEEMHGQ-C------LGP-NDTKPIKVFIAQSRSSGSHRDV----EDEELTRIFV- 125
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
+ T+E LRE F YG + + I K G+V++ S A +A+
Sbjct: 126 MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 356
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAIATLHGKILNGVRLKVMLADSPRE 467
Query: 357 -SNKQ 360
SNK+
Sbjct: 468 ESNKR 472
Score = 53 (23.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 302 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 300 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 356
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 171 (65.3 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 44/181 (24%), Positives = 90/181 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 93 (37.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G G R IFV +L+ + + +L + F + + KV+ D T + KG+GFV
Sbjct: 273 GVGPVRGCGGGWCIFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVT 331
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
+ E A+ +NG R +++ T+K+
Sbjct: 332 MTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 171 (65.3 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 44/181 (24%), Positives = 90/181 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 91 (37.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 171 (65.3 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 44/181 (24%), Positives = 90/181 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 91 (37.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 85 (35.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 150 (57.9 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 55/203 (27%), Positives = 98/203 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
+TG +KG G+VR+ S+ +A+ + F R + P NK + S +Q Y Y N
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RAILAEPK-NKVSESSEQDY----YSN 207
Query: 271 SQVAQSDDDPN-NTTVFVGNLDS 292
+ +P N F G S
Sbjct: 208 MRQETVGHEPRINMFSFAGEQQS 230
Score = 115 (45.5 bits), Expect = 0.00074, P = 0.00074
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCS---TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
RAM EM+G S T+P+++ A ++ SG S+++ + D T +
Sbjct: 79 ACRAMEEMHGQCLSPNDTKPIKVFIAQSRS--SG-------SHRDVE------DEELTRI 123
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
FV + T+E LRE F YG + + I K G+V++ S A +A+
Sbjct: 124 FV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 356
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGKILNGVRLKVMLADSPRE 467
Query: 357 -SNKQ 360
SNK+
Sbjct: 468 ESNKR 472
Score = 53 (23.7 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 302 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 300 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 356
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 190 (71.9 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 49/192 (25%), Positives = 99/192 (51%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
RD +FV ++ D+ D L+E F Y T+ KV+ D +G++KG+GFVR+
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHE 86
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFV 287
+A+ +++G + + +G A +K + + + ++ ++ + P +++
Sbjct: 87 AAQKAVLDLHGKSIDGKVLYVGRA--QKKIERLAEL-RRRFERLRLKEKSRPPG-VPIYI 142
Query: 288 GNLDSIVTDEHLRELFSQYGQL----VHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQL 343
NLD + DE L+E FS +G + V +++ GK G V F+ A +A+ +NG +
Sbjct: 143 KNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIV 202
Query: 344 GGQNIRLSWGRS 355
G + + ++ G++
Sbjct: 203 GSKPLHVTLGQA 214
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-- 150
+D+ L F G +VKVIR+ +G+ +G+GF+ + + A++ + +G +
Sbjct: 46 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 104
Query: 151 ---GEQN--------FRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
G R + EK P I++ +L + D L+E F + +
Sbjct: 105 LYVGRAQKKIERLAELRRRFERLRLKEK-SRPPGVPIYIKNLDETINDEKLKEEFSS-FG 162
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
S AKV+++ G+ KG+G V F E +A+ EMNG ++P+ +
Sbjct: 163 SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
Score = 111 (44.1 bits), Expect = 0.00042, P = 0.00042
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
N++ G+ ++P+ + + ++ D T VFV N+ + DE L+ELF +YG V
Sbjct: 8 NRQVYVGRFKFPE---ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 64
Query: 313 KI---PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQ 346
K+ +GK GFV++ A++A+ L+G + G+
Sbjct: 65 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 103
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 167 (63.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 44/179 (24%), Positives = 87/179 (48%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIE--------GYGFIEFISRAGAERVLQTFN 144
M + L + F+ GEV + K+IR+K G GYGF+ +++ + AER + T N
Sbjct: 67 MSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLN 126
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + + + ++++A D D +++ L +T +++ F +Y +
Sbjct: 127 GLRLQS--KTIKVSYAR----PSSDGIKDANLYISGLPKTMTQKNVEDMF-TQYGRIINS 179
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATNKKTVSGQQ 261
++++D+ +G ++G F+RF SE A+ ++NG S + P+ + A N Q
Sbjct: 180 RILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQ 238
Score = 113 (44.8 bits), Expect = 0.00081, P = 0.00081
Identities = 30/116 (25%), Positives = 65/116 (56%)
Query: 256 TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
T++G + K + + S S D + +++ L +T +++ ++F+QYG++++ +I
Sbjct: 124 TLNGLRLQSK-TIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRIL 182
Query: 316 AGKRCG------FVQFADRSCAEEALRMLNGTQLGGQN--IRLSWGRSPS-NKQAQ 362
+ G F++F RS AEEA++ LNG++ G + I + + +P+ +K +Q
Sbjct: 183 VDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQ 238
Score = 84 (34.6 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L D + +L + F + + KV+ D T + KG+GFV + E A++
Sbjct: 288 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISS 346
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ ++K
Sbjct: 347 LNGYRLGDKVLQVSFKSSK 365
Score = 82 (33.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/99 (28%), Positives = 48/99 (48%)
Query: 267 SYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC--- 320
S + VA S + +FV NL + L ++F +G + +VK+ +C
Sbjct: 272 SVSSMNVASSSS--SGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGF 329
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
GFV + A A+ LNG +LG + +++S+ S S+K
Sbjct: 330 GFVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 80 (33.2 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +++ ++ +G G FI F R+ AE ++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 144 NGTPMPNG 151
NG+ P+G
Sbjct: 212 NGSK-PSG 218
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 210 (79.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 75/289 (25%), Positives = 137/289 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +G+GF+ F + AER +
Sbjct: 98 VGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGHGFVHFETEEAAERAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F + S E T + T +++ + + D L F R
Sbjct: 156 EKMNGMLL-NDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLF-GR 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D G++KG+GFV F + +A+ EMNG + + + +GPA +K V
Sbjct: 214 FGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDP-NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA 316
+ K ++ QV Q ++V NLD + DE L++ FS +G + K+
Sbjct: 271 DRHIEL-KRKFE--QVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMT 327
Query: 317 -GKRC---GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
G R GFV F+ A +A+ +NG + + + ++ + +QA
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQA 376
Score = 204 (76.9 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 68/268 (25%), Positives = 126/268 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY + F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ +R + +F+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRRSGVGN--VFIKNLNKTIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KG+GFV F E RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + D ++ T+ G +++ ++ + + G+ K
Sbjct: 185 TRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLS---VKVMTDEGGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNI 348
GFV F A++A+ +NG +L G++I
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKHI 261
Score = 163 (62.4 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 54/195 (27%), Positives = 95/195 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ LN F G+V++VKV+ + + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDD------------TPDHTI-------FVGD 180
+ NG + NG+ + G +K+ D T D I +V +
Sbjct: 248 VDEMNGKEL-NGKHIY------VGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D LQ+ F + + + KV+ + GR+KG+GFV F E +A++EMNG
Sbjct: 301 LDDGIDDERLQKEF-SPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 164 (62.8 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 54/195 (27%), Positives = 95/195 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ L Y ++ L F+ G+V++ KV+ + + G GYGF+ F S + ++
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEEL 169
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
+G N + RL+ K P + +F+ L DVTD L++ F +
Sbjct: 170 DGYQYQNKKLLCRLSNLYTNLNSKY---PSNNLFIKPLPYDVTDDQLRKLFEP-FGKIIE 225
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRPMRIGPA-TNKKTVSG 259
KV++D G++K GFVRF E + +A+ MNGV S P+ + A T ++ +S
Sbjct: 226 CKVMLDH-NGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISR 284
Query: 260 QQQYPKASYQNSQVA 274
+Q+ + YQ +A
Sbjct: 285 KQRKMQTIYQEKIIA 299
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 36/141 (25%), Positives = 70/141 (49%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G G+ +DT +FV L V D L + F +++ + +V+ D+ TG KGYGFV+
Sbjct: 761 GGGKHTNDT---NLFVFHLPPFVDDSYLFQLF-SQFGKLQSVRVITDKDTGENKGYGFVK 816
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV-SGQQQYPKASY---QNSQVAQSDD 278
F E L+ EMNG ++ +++ K+++ SG+ + + QN Q + ++
Sbjct: 817 FYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNKNQNEQHLEEEE 876
Query: 279 DPNNTTVFVGNLDSIVTDEHL 299
+ + N+D +++ +
Sbjct: 877 EEQTFNLPENNIDGNESNQEI 897
Score = 97 (39.2 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 29/108 (26%), Positives = 54/108 (50%)
Query: 252 TNKKTVSGQQQYPKASYQNSQVAQSDDD---PNNTTVFVGNLDSIVTDEHLRELFSQYGQ 308
TN ++ + S +S + + N+T +FV +L V D +L +LFSQ+G+
Sbjct: 735 TNTTNLTNLESLNPLSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGK 794
Query: 309 LVHVKI----PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
L V++ G K GFV+F A + + +NG ++G + +++
Sbjct: 795 LQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEMNGFRIGSKFLKV 842
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 204 (76.9 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 66/236 (27%), Positives = 116/236 (49%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS---- 161
G +++ V+ + + G +GYGF+ F + AER ++ NG + NG + F + S
Sbjct: 123 GNILSCNVVCD-ENGS-KGYGFVHFETHEAAERAIKKMNGMLL-NGRKVFVGQFKSRKER 179
Query: 162 -FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
G + + P+ +++ + D+ D L++ F ++ KV+ D +G++KG+GF
Sbjct: 180 EAELGARAKEFPN--VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGF 235
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDP 280
V F + +A+ EMNG + + + +G A +K V Q + + Q Q +
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKVERQTELKRTFEQMKQDRITRYQV 293
Query: 281 NNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--PAGKRCGFVQFADRSCAEEA 334
N ++V NLD + DE LR+ FS +G + K+ G+ GF F S EEA
Sbjct: 294 VN--LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEA 346
Score = 179 (68.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 66/285 (23%), Positives = 126/285 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+ T Y ++ F AE L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IFV +L + + L +T A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-- 260
VV D G +KGYGFV F RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELG 184
Query: 261 ---QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
+++P +N + DD +F G ++ ++ + + G+
Sbjct: 185 ARAKEFPNVYIKN--FGEDMDDERLKDLF-GKFGPALS---VKVMTDESGK--------S 230
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 113 (44.8 bits), Expect = 0.00073, P = 0.00073
Identities = 42/162 (25%), Positives = 78/162 (48%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDHTI---FVGDLAADVT 186
+ NG + NG+Q + R E K+D + + +V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D L++ F + + + AKV+++ GR+KG+GFV F E
Sbjct: 307 DERLRKAF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 209 (78.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 66/247 (26%), Positives = 120/247 (48%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + + G +GYGF+ F ++ AER +
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGS-KGYGFVHFETQEAAERAI 155
Query: 141 QTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRAR 197
+ NG + N + F R E + T +++ + D+ D L++ F +
Sbjct: 156 EKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF-GK 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G++KG+GFV F + +A+ EMNG + + + +G A +K V
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA--QKKV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--P 315
Q + + Q Q + N ++V NLD + DE LR+ FS +G + K+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME 328
Query: 316 AGKRCGF 322
G+ GF
Sbjct: 329 GGRSKGF 335
Score = 205 (77.2 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 68/282 (24%), Positives = 130/282 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+ W+ ++ + IF+ +L + + L +TF A + +
Sbjct: 72 MNFDVI-KGKP-VRIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA-FGNIL 126
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KVV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 127 SCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 263 YPKASYQNSQVAQSDDDPNNTTV--FVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC 320
+ N + +D ++ + G ++ ++ + + G+ K
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS---VKVMTDESGK--------SKGF 233
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
GFV F A++A+ +NG +L G+ I + + +Q +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 55/217 (25%), Positives = 94/217 (43%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 248 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F N V +P
Sbjct: 307 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSYMQRMASVRAVPNPVINPYQPA 363
Query: 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNT 283
P+ Q Q A Y SQ+AQ P T
Sbjct: 364 P--PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWT 398
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 168 (64.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 44/181 (24%), Positives = 89/181 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 168 (64.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 44/181 (24%), Positives = 89/181 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + + F G++ + K++R+K TGQ GYGF+ + A++ + T NG +
Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L ++ +++ F ++Y +++++D+ T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQAT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
G ++G GF+RF E A+ +NG + P+ + A N +GQ YQ+
Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHL-YQS 221
Query: 271 S 271
S
Sbjct: 222 S 222
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L+ + + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 286 IFVYNLSPEADESVLWQLF-GPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 236 MNGVFCSTRPMRIGPATNKK 255
+NG R +++ T+K+
Sbjct: 345 LNGYRLGERVLQVSFKTSKQ 364
Score = 87 (35.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + + F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NG 145
NG
Sbjct: 187 NG 188
Score = 79 (32.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L +LF +G + +VK+ +C GFV + A A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S +K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 167 (63.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 39/146 (26%), Positives = 74/146 (50%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F+ GEV + K+IR+K G GYGF+ +++ AER + T NG + +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS-- 88
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ +++ A + D +++ L +T +++ F + ++V++D+ T
Sbjct: 89 KTIKVSVAR----PSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGRIINSRVLVDQAT 143
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G F+RF SE A+ NG
Sbjct: 144 GLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 126 (49.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 52/212 (24%), Positives = 101/212 (47%)
Query: 161 SFGAGEKRDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPS---TKGAKVVIDRLTGRTK 216
S G G+ DD I +L + + M Q+ R+ + S + AK++ D++ G +
Sbjct: 2 SNGYGDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQS 276
GYGFV + + + RA+ +NG +R+ T K +V+ P + +S
Sbjct: 62 GYGFVNYLNAKDAERAINTLNG-------LRLQSKTIKVSVAR----PSS--------ES 102
Query: 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSC 330
D N +++ L +T + + ++F +G++++ ++ + G F++F RS
Sbjct: 103 IKDAN---LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSE 159
Query: 331 AEEALRMLNGTQLGGQN--IRLSWGRSPS-NK 359
AEEA+ NG + G + I + + +P+ NK
Sbjct: 160 AEEAIASFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 90 (36.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 168 NGHKPPGSSEPITVKFAA 185
Score = 84 (34.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IF+ +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 246 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 305 LNGYRLGDKTLQVFFKTSK 323
Score = 76 (31.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+F+ NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++ + S S+K
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 146 (56.5 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 48/173 (27%), Positives = 89/173 (51%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + PN +
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263
+TG +KG G+VR+ S+ +A+ + F R + P NK + S +Q Y
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIENCDRSF---RAILAEPK-NKASESSEQDY 204
Score = 115 (45.5 bits), Expect = 0.00075, P = 0.00075
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ + +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCS---TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
RAM EM+G S T+P+++ A ++ SG S+++ + D T +
Sbjct: 79 ACRAMEEMHGQCLSPNDTKPIKVFIAQSRS--SG-------SHRDVE------DEELTRI 123
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
FV + T+E LRE F YG + + I K G+V++ S A +A+
Sbjct: 124 FV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 107 (42.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 356
L ++F ++G L+ V + +GK G+ ++ADR A +A+ L+G L G +++ SP
Sbjct: 412 LEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGKILNGVRLKVMLADSPRE 471
Query: 357 -SNKQ 360
SNK+
Sbjct: 472 ESNKR 476
Score = 50 (22.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 302 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
++++Y +L + P G R G D + A + LR + + Q + W +PS +Q
Sbjct: 304 IYAKY-KLHGFQYPPGNRIGVSFIDDGNNATDLLRKMATQMVAAQLASMVWN-NPSQQQ 360
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 144 (55.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 55/206 (26%), Positives = 99/206 (48%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN
Sbjct: 35 YTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ Y + V+
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSVI 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKAS 267
+++TG +KG G+VR+ S+ +A+ + F R + P NK S +Q Y
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF---RALLAEPK-NKVLESPEQDY---- 204
Query: 268 YQNSQVAQSDDDPN-NTTVFVGNLDS 292
Y + + +P N FVG S
Sbjct: 205 YSSVRQETLGHEPRGNLFPFVGEQQS 230
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 47/173 (27%), Positives = 82/173 (47%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
RAM EM+G C +GP + K + ++S + V +D T +FV
Sbjct: 79 ACRAMEEMHGQ-C------LGP-NDTKPIKVFIAQSRSSGSHRDV----EDEELTRIFV- 125
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
+ T+E LRE F YG + + + K G+V++ S A +A+
Sbjct: 126 MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 109 (43.4 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
L ++F ++G L+ V + +GK G+V++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKILNGVRLKVMLADSP 465
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 144 (55.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 55/206 (26%), Positives = 99/206 (48%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ G++ + V+R+K T + +G F++F + A R ++ +G + PN
Sbjct: 35 YTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ Y + V+
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSVI 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKAS 267
+++TG +KG G+VR+ S+ +A+ + F R + P NK S +Q Y
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF---RALLAEPK-NKVLESPEQDY---- 204
Query: 268 YQNSQVAQSDDDPN-NTTVFVGNLDS 292
Y + + +P N FVG S
Sbjct: 205 YSSVRQETLGHEPRGNLFPFVGEQQS 230
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 47/173 (27%), Positives = 82/173 (47%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
RAM EM+G C +GP + K + ++S + V +D T +FV
Sbjct: 79 ACRAMEEMHGQ-C------LGP-NDTKPIKVFIAQSRSSGSHRDV----EDEELTRIFV- 125
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
+ T+E LRE F YG + + + K G+V++ S A +A+
Sbjct: 126 MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 109 (43.4 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
L ++F ++G L+ V + +GK G+V++ADR A +A+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGKILNGVRLKVMLADSP 465
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 204 (76.9 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 207 (77.9 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 75/288 (26%), Positives = 136/288 (47%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L+ +D L F+ G +++ KV ++ + G+GF+ F + A++ +
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP--DHT-IFVGDLAADVTDYMLQETFRAR 197
T NG + N + F ++ S E + T I+V +L DV + LQ+ F ++
Sbjct: 156 NTMNGMLL-NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLF-SQ 213
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ KV+ D +G ++ +GFV F E +A+ MNG S R + G A +K V
Sbjct: 214 FGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA--QKRV 270
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA- 316
Q + + Q Q N ++V NLD + D+ LR+ FS YG + K+
Sbjct: 271 ERQNELKRRFEQMKQDRLRRYQGVN--LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQA 361
K GFV F+ A +A+ +NG +G + + ++ + ++A
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Score = 178 (67.7 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 65/268 (24%), Positives = 118/268 (44%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N M G Q R+ W+ G ++ + IF+ +L + + L +TF + + +
Sbjct: 70 DTMN-FEMLKG-QPIRIMWSQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTF-STFGN 124
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
KV D R G+GFV F +A+ MNG+ + R + +G +++ +
Sbjct: 125 ILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAE 182
Query: 261 QQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK 318
+ N V D D +++ + +R+ G H +
Sbjct: 183 LGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD---NSG---HSRC---- 232
Query: 319 RCGFVQFADRSCAEEALRMLNGTQLGGQ 346
GFV F A++A+ +NG ++ G+
Sbjct: 233 -FGFVNFEKHEEAQKAVVHMNGKEVSGR 259
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 49/188 (26%), Positives = 88/188 (46%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E +++ +L +DE L F+ G++++VKV+R+ +G +GF+ F A++
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 140 LQTFNGTPMPN-----GEQNFRL---NWASFGAGEKRDDTPDH----TIFVGDLAADVTD 187
+ NG + G R+ N + + D ++V +L + D
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + Y AKV+ + G +KG+GFV F E +A+TEMNG T+P+
Sbjct: 308 DKLRKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 248 IGPATNKK 255
+ A K+
Sbjct: 365 VALAQRKE 372
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 204 (76.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 110 (43.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D T++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNK 359
G F+ FA ++ A+ +NG L + I +S+ +K
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 196 (74.1 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 67/246 (27%), Positives = 118/246 (47%)
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF--RLNWASFGAGEKRDDTPDHT-IFVG 179
+GYGF+ F ++ AER ++ NG + N + F R E + T +++
Sbjct: 10 KGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
+ D+ D L++ F P+ KV+ D +G++KG+GFV F + +A+ EMNG
Sbjct: 69 NFGEDMDDERLKDLFG---PALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 123
Query: 240 FCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHL 299
+ + + +G A +K V Q + + Q Q + N ++V NLD + DE L
Sbjct: 124 ELNGKQIYVGRA--QKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERL 179
Query: 300 RELFSQYGQLVHVKI--PAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 355
R+ FS +G + K+ G K GFV F+ A +A+ +NG + + + ++ +
Sbjct: 180 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 239
Query: 356 PSNKQA 361
+QA
Sbjct: 240 KEERQA 245
Score = 155 (59.6 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F G ++VKV+ + ++G+ +G+GF+ F A++
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKA 116
Query: 140 LQTFNGTPMPNGEQNF--RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVT 186
+ NG + NG+Q + R E K+D + ++V +L +
Sbjct: 117 VDEMNGKEL-NGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 175
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
D L++ F + + + AKV+++ GR+KG+GFV F E +A+TEMNG +T+P+
Sbjct: 176 DERLRKEF-SPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 232
Query: 247 RIGPATNKK 255
+ A K+
Sbjct: 233 YVALAQRKE 241
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 43/161 (26%), Positives = 73/161 (45%)
Query: 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK 265
VV D G +KGYGFV F + RA+ +MNG+ + R + +G ++K +
Sbjct: 2 VVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 59
Query: 266 ASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR--CGFV 323
+ N V++ N + DE L++LF + + +GK GFV
Sbjct: 60 KEFTN--------------VYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFV 105
Query: 324 QFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
F A++A+ +NG +L G+ I + GR+ + Q +
Sbjct: 106 SFERHEDAQKAVDEMNGKELNGKQIYV--GRAQKKVERQTE 144
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 185 (70.2 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 42/146 (28%), Positives = 79/146 (54%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
M + L + F GE+ + K++R+K TGQ GYGF+ +I AE+ + T NG +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
+ ++++A + RD ++V L +T L++ F ++Y +++++D++T
Sbjct: 108 KTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVT 162
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNG 238
G ++G GF+RF E A+ +NG
Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 39/131 (29%), Positives = 61/131 (46%)
Query: 249 GPATNKKTVSGQQQYPKASYQN--SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQY 306
GP N T +G P N S V + + + T + V L +T E L+ LF
Sbjct: 8 GPTCNN-TANG----PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSI 62
Query: 307 GQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
G++ K+ K G FV + D AE+A+ LNG +L + I++S+ R PS+
Sbjct: 63 GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSAS 121
Query: 361 AQPDPNQWNAG 371
+ D N + +G
Sbjct: 122 IR-DANLYVSG 131
Score = 101 (40.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 142 TFNGTPMPNGEQNFRLNWAS-FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N T NG N +S +G D + + V L ++T L+ F +
Sbjct: 10 TCNNTA--NGPTTINNNCSSPVDSGNTEDSKTN--LIVNYLPQNMTQEELKSLFGS-IGE 64
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251
+ K+V D++TG++ GYGFV + D + +A+ +NG+ T+ +++ A
Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 97 (39.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA------GK 318
K SY A S D N ++V L +T + L +LFSQYG+++ +I +
Sbjct: 111 KVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISR 166
Query: 319 RCGFVQFADRSCAEEALRMLNG 340
GF++F R AEEA++ LNG
Sbjct: 167 GVGFIRFDKRIEAEEAIKGLNG 188
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 131 (51.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 53/209 (25%), Positives = 102/209 (48%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT- 142
L++G + M E+ L T F V V +I++K T G F+ SR A++++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N +P ++ +A GE + +H +FVG L +V++ +Q F ++Y + K
Sbjct: 80 HNKKTLPGANSLLQVKYAD---GEL--ERLEHKLFVGMLPKNVSEAEVQSLF-SKYGTIK 133
Query: 203 GAKVVIDRLTGRT-KGYGFVRFGDESEQLRAMTEMNG---VFCSTRPMRIGPATNKKTVS 258
+++ R +T KG F+++ + + + AM +NG + ST P+ + A ++
Sbjct: 134 DLQIL--RGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERE-R 190
Query: 259 GQQQYPKASYQNSQVAQ-SDDDPNNTTVF 286
++ KA S +A+ + DP N ++F
Sbjct: 191 HTRRLQKAQ---SHIARLGNGDPTNPSLF 216
Score = 121 (47.7 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 271 SQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK-----RC-GFVQ 324
S V Q++ P +F+ N+ D+ L F +G ++ K+ K +C GFV
Sbjct: 338 SSVVQTEG-PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVS 396
Query: 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 366
+ ++ A+ A+ M+NG LGG+ +++ R +N Q +P+
Sbjct: 397 YDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQPSSNPS 438
Score = 48 (22.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 166 EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV 221
EK ++ +FVG + +++ L F+ + ++ D++T ++G F+
Sbjct: 10 EKNEEEESVKLFVGQIPKHMSESQLLTLFQ-EFAVVDEVNIIKDKITRASRGCCFL 64
Score = 41 (19.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 364 DPNQWNAGYYGYAQGYENYGY 384
+P+ + A GY Y YGY
Sbjct: 212 NPSLFGALPMGYVPPYNGYGY 232
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 201 (75.8 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 56/157 (35%), Positives = 84/157 (53%)
Query: 82 RTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
RTLWIGD+ W +ET L+ F G KV R +++GY FIEFI+ A + L
Sbjct: 68 RTLWIGDVPTDWTEET-LSQVFTECGHA-PYKVKRVYVKDELKGYCFIEFITFDEARQTL 125
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG +P G ++ R N F A + + + + V + D+ D L F +Y S
Sbjct: 126 YDLNGNRIP-GFKDIRFNLC-F-ANDSYNPNSEFNLHVSSVPDDMADAELYRIFD-KYQS 181
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
+GAK+ + G +KG GFVRFG++++Q A+ EM+
Sbjct: 182 CRGAKM-FRFVDGSSKGSGFVRFGNQTDQQMALVEMH 217
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 137 (53.3 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 54/202 (26%), Positives = 94/202 (46%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PNGEQ 153
E L F+ G++ + V+R+K T + +G F++F + A R ++ +G + P+ +
Sbjct: 38 ELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTK 97
Query: 154 NFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR 210
++ A S +G RD + + T IFV + T+ L+E F+ Y + ++ ++
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-YGDIEYCSIIKNK 155
Query: 211 LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQN 270
+TG +KG G+VR+ S+ +A+ C R R A K VSG + S
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAIEN-----CD-RSFRALLAEPKNKVSGSPEQDDYS-SG 208
Query: 271 SQVAQSDDDPNNTTVFVGNLDS 292
Q A + N FVG S
Sbjct: 209 RQEALGQEPRANLFPFVGEQQS 230
Score = 124 (48.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 50/175 (28%), Positives = 83/175 (47%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKHTSELVLRERF-SPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNK--KTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
RAM EM+G C +GP+ K K Q ++S + V +D T +F
Sbjct: 79 ACRAMEEMHGQ-C------LGPSDTKPIKVFIAQS---RSSGSHRDV----EDEELTRIF 124
Query: 287 VGNLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
V + T+E LRE F YG + + I K G+V++ S A +A+
Sbjct: 125 V-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 113 (44.8 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
L ++F ++G L+ V + +GK G+V++ADR A EA+ L+G L G +++ SP
Sbjct: 408 LEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSP 465
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 183 (69.5 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 63/289 (21%), Positives = 133/289 (46%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ + +G+GF+ + ++ A++ +
Sbjct: 97 VGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
NG M NG++ F + S + + +F +L+ DV L+E + +Y
Sbjct: 156 AKVNGM-MINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ-QYGE 213
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSG 259
++ D G++KG+GF F + +E + + E NG +P+ G A +K +
Sbjct: 214 ITNITIMADD-KGKSKGFGFANF-ESAEAAKNVVENENGKIFHGKPIYAGRA--QKKIER 269
Query: 260 QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV------K 313
+ + K +++ +++ N+D + ++ LRE+FSQ+G + K
Sbjct: 270 EAEL-KHTFETKY--------QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDK 320
Query: 314 IPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV + A A+ +NG +G + + ++ + ++AQ
Sbjct: 321 ATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
Score = 175 (66.7 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 46/173 (26%), Positives = 87/173 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E +L F G V ++V R+ T + Y ++ + + A AER L T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ G+ R+ W+ ++ + +F+ +L + L +TF A + +
Sbjct: 71 LNNTPI-RGKA-CRIMWSQRDPSLRKSGVGN--VFIKNLDKGIDHKALYDTFSA-FGNIL 125
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
KVV D +KG+GFV + + +A+ ++NG+ + + + +GP + K
Sbjct: 126 SCKVVTDD-GNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177
Score = 133 (51.9 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 52/199 (26%), Positives = 93/199 (46%)
Query: 171 TP-DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
TP +++VGDL +V++ L E F + +V D T R+ Y +V + + ++
Sbjct: 6 TPISSSLYVGDLLPEVSEQHLFEIFN-QVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADA 64
Query: 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGN 289
RA+ +N P+R G A + Q+ P S + S V VF+ N
Sbjct: 65 ERALDTLNNT-----PIR-GKACR---IMWSQRDP--SLRKSGVGN---------VFIKN 104
Query: 290 LDSIVTDEHLRELFSQYGQLVHVKIP-----AGKRCGFVQFADRSCAEEALRMLNGTQLG 344
LD + + L + FS +G ++ K+ + K GFV + + A++A+ +NG +
Sbjct: 105 LDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMIN 164
Query: 345 GQNIRLSWGRSPSNKQAQP 363
GQ + + +S S ++ QP
Sbjct: 165 GQKVFVGPFKS-SKERGQP 182
Score = 133 (51.9 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 67/272 (24%), Positives = 113/272 (41%)
Query: 106 GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT-----FNGTPMPNGEQNFRLNWA 160
GE+ + ++ + + G+ +G+GF F S A+ V++ F+G P+ G ++
Sbjct: 212 GEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIERE 270
Query: 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
+ +++ ++ + + L+E F +++ + A V+ D +KG+GF
Sbjct: 271 AELKHTFETKYQGVNLYIKNIDDSIDNDKLREVF-SQFGTITSAIVMKDDKATTSKGFGF 329
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ-----QQYPKASYQNSQVAQ 275
V + E RA+TEMNG T+P+ + A K Q QQ K +
Sbjct: 330 VCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPT 389
Query: 276 SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEAL 335
P T N +V + + + GQ V V P G Q+A+ + A
Sbjct: 390 YGSGPVFFTPAPVN-PQVVYQQMMPRPRNWNGQPVGV--PQG------QYANMNYARGQP 440
Query: 336 RMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQ 367
R Q GGQ R + G P AQP P Q
Sbjct: 441 RQNGPRQNGGQP-RQN-GPRPDVSGAQPIPVQ 470
Score = 62 (26.9 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 359 KQAQPDPNQWNAGYYGYAQG-YENYGYAAAAPQ 390
+Q P P WN G QG Y N YA P+
Sbjct: 409 QQMMPRPRNWNGQPVGVPQGQYANMNYARGQPR 441
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 204 (76.9 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 63/187 (33%), Positives = 88/187 (47%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
T+FV +LA L F P K A VV + TG +GYGFV F + RA
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGP-IKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLD-SI 293
E+ R +R+ AT +K QN V ++ N + + NL SI
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRSEVDTD------QNKAVKKTIRQDNRPRLIIRNLPWSI 118
Query: 294 VTDEHLRELFSQYGQLVHVKIPA---GKRCGF--VQFADRSCAEEALRMLNGTQLGGQNI 348
+HL FS++G++ +KIP G+ CGF V DR AEEA+ LNGT++ G+ I
Sbjct: 119 KKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPI 178
Query: 349 RLSWGRS 355
+ W S
Sbjct: 179 AVDWAVS 185
Score = 111 (44.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 47/209 (22%), Positives = 84/209 (40%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF-----ISRAGAE 137
TL++ +L + + L F+ G + V+ N +TG+ GYGF+ F RA E
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 138 --------RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
R+L+ TP E + N A ++D+ P + + +L +
Sbjct: 66 LKNKKLHGRILRLDFATPRKRSEVDTDQNKA-VKKTIRQDNRP--RLIIRNLPWSIKKPQ 122
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
E +++ + K+ + GR G+ FV D AM +NG RP+ +
Sbjct: 123 HLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 250 PATNKKTVSGQQQYPKASYQNSQVAQSDD 278
A +K +S + ++ SD+
Sbjct: 182 WAVSKDAFEATTLKDASSEEENKEFVSDE 210
Score = 74 (31.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI--- 314
SG K S N ++ D++ TVFV NL T++ L F Q+G L + K+
Sbjct: 255 SGDSSSDKNSI-NHEIR--DNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKD 311
Query: 315 PAGKRC---GFVQFA-DRSCAEEALRM 337
PA R GF++F ++ C + L M
Sbjct: 312 PATDRSLGRGFIKFRYEKDC-QNCLEM 337
Score = 65 (27.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 313 KIPAG--KRCGFVQFADRSCAEEALRMLNGTQLGGQNI---RLSWGRSPSNKQAQPDPNQ 367
K AG K GF+QF A ALR LNG ++ + I + W R K P+P
Sbjct: 532 KAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKIIDAEIEWAR----KHKIPEPQL 587
Query: 368 WNAGY 372
N Y
Sbjct: 588 PNIDY 592
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 187 (70.9 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 51/174 (29%), Positives = 82/174 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+ G+L Y +D L V+V+ N+ TGQ G+ F+ + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPD--HTIFVGDLAADVTDYMLQETFRARYPST 201
+GT + ++N+A K P+ H +FVG+L+ VT L FR
Sbjct: 147 DGTEYLG--RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-ECGDV 203
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
GA+VV D TGR++GYGFV + ++E A+ ++G R +R+ A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 55/178 (30%), Positives = 91/178 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203
N + G+ R+N AS A K D + IF+G+L ++ + +L +TF A +
Sbjct: 75 NMIKL-YGKP-IRVNKAS--AHNKNLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
K++ D TG +KGY F+ F A+ MNG + RP+ + A KK G++
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF-KKDSKGER 186
Score = 105 (42.0 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
AG + D ++VG L V++ +L E F P + DR+TG+ +GYGFV F
Sbjct: 3 AGPISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEF 61
Query: 224 GDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
E + A+ MN + +P+R+ A+
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
Score = 88 (36.0 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 36/141 (25%), Positives = 60/141 (42%)
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV-KI---P-AG 317
Y K N A + + +F+GNLD + ++ L + FS +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 318 KRCG--FVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDP--NQWNAGYY 373
G F+ FA ++ A+ +NG L + I +S+ +K + + A
Sbjct: 140 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQN 199
Query: 374 GYAQGYENYGYAAAAPQDPSM 394
+Q + A AP PSM
Sbjct: 200 PLSQADRPHQLFADAPPPPSM 220
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 139 (54.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G + M E L T F V V +I+ K T G F+ +R A++V+ +F
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 144 -NGTPMPNGEQNFRLNWASFGAGEKRD--D---TPDHTIFVGDLAADVTDYMLQETFRAR 197
N +P ++ +A G E+ D D P+H +FVG L +V++ +Q F +
Sbjct: 74 HNKKTLPGASSPLQVKYAD-GELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLF-SE 131
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
Y + K +++ L +KG F+++ + + + AM +NG
Sbjct: 132 YGTIKDLQILRGSLQ-TSKGCLFLKYESKEQAVAAMEALNG 171
Score = 105 (42.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 25/107 (23%), Positives = 50/107 (46%)
Query: 264 PKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGK--- 318
P S + + S + P +F+ N+ D+ L F +G+++ K+ K
Sbjct: 318 PGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 377
Query: 319 --RC-GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
+C GF+ + ++ A+ A+ +NG QL G+ +++ R +Q Q
Sbjct: 378 ISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQQQ 424
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 364 DPNQWNAGYYGYAQGYENYGY 384
+P+ + A Y Y YGY
Sbjct: 212 NPSMFGALPMSYVPPYNGYGY 232
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 196 (74.1 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D IF GDL +V D +L F +RYPS AKVV D+ TG+TKGYGFV F D ++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDY 357
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 358 VRAMREMNGRYVGSRPIKL 376
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 136 (52.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 46/176 (26%), Positives = 90/176 (51%)
Query: 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM-PN 150
+ E+ L F+ GE+ + V+R+K T + +G F++F + A R ++ +G + P+
Sbjct: 35 YTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLTPS 94
Query: 151 GEQNFRLNWA-SFGAGEKRD-DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
+ ++ A S +G RD + + T IFV + T+ L+E F+ + + ++
Sbjct: 95 DTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKV-FGDIEYCSII 152
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263
+++TG +KG G+VR+ S+ +A+ + S R + P NK + S +Q Y
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SYRAILAEPK-NKASESSEQDY 204
Score = 115 (45.5 bits), Expect = 0.00073, P = 0.00073
Identities = 49/173 (28%), Positives = 81/173 (46%)
Query: 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
D+ P+ IF+ ++ ++ +L+E F + + + VV D+ T +KG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
RAM EM+G C T P P K Q ++S + V +D T +FV
Sbjct: 79 ACRAMEEMHGQ-CLT-PSDTKPI---KVFIAQS---RSSGSHRDV----EDEELTRIFV- 125
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI------PAGKRCGFVQFADRSCAEEAL 335
+ T+E LRE F +G + + I K G+V++ S A +A+
Sbjct: 126 MIPKSYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 108 (43.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 278 DDPNNTTVF-VGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALR 336
D P +F V N + D L ++F ++G L+ V + +GK G+ ++ADR A +A+
Sbjct: 385 DTPVKERLFIVFNPHPLPLDV-LEDIFCRFGNLIEVYLVSGKNVGYAKYADRLSANDAIT 443
Query: 337 MLNGTQLGGQNIRLSWGRSP---SNKQ 360
L+G L G +++ SP SNK+
Sbjct: 444 TLHGKILNGVRLKVMLADSPREESNKR 470
Score = 53 (23.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 302 LFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
++++Y +L + P G R G D S A + LR + + Q + W +PS +Q
Sbjct: 298 IYAKY-KLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQLASIVWN-NPSQQQ 354
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 198 (74.8 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 70/218 (32%), Positives = 107/218 (49%)
Query: 166 EKRDDTPDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224
E +D D TIFV LAA + L F P K A++V DR++GR+KG G+V F
Sbjct: 165 ELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGP-VKEAQIVKDRVSGRSKGVGYVEFK 223
Query: 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTT 284
DES A+ ++ G P+ I T + + Q + +AS N A P +
Sbjct: 224 DESSVAPAI-QLTGQKLLGIPI-IAQLTEAEK-NRQARNSEASSGNKHSA-----PFHR- 274
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIP---AGKR--CGFVQFADRSCAEEALRMLN 339
++VGN+ + + L+ +F +G+L V++ G+ GFVQF D + A EAL +N
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMN 334
Query: 340 GTQLGGQNIRLSWGR---SPSNKQAQPDPNQWNAGYYG 374
G LGG+ IR+ G +P N Q + + + G
Sbjct: 335 GYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQG 372
Score = 176 (67.0 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
RT+++ L + L F G V ++++++ +G+ +G G++EF + +Q
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ 233
Query: 142 TFN----GTP----MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
G P + E+N + + +G K P H ++VG++ + + LQ
Sbjct: 234 LTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHS-APFHRLYVGNIHFSIDENDLQSV 292
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F + + ++ D TGR++GYGFV+F D ++ A+ +MNG R +R+G +
Sbjct: 293 FEP-FGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGND 350
Query: 254 KKTVSGQQ--QYPKASYQNSQ 272
K T Q Q A+ N Q
Sbjct: 351 KFTPENTQRTQSQSANQSNFQ 371
Score = 62 (26.9 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 296 DEHLRELFSQYGQLVHVKI-PAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
D+ E +YG +VH+ + P + +++F E A++ LNG GG+ I
Sbjct: 479 DDVRAECEEKYGHVVHIALDPNSQGDIYLKFDRVQGGENAIKGLNGRFFGGRQI 532
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 201 (75.8 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 55/233 (23%), Positives = 115/233 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + + K D+ + I+V ++ +VTD + F +Y
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KYGDV 268
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
+ + D+ TG+++G+GFV F + +A+ E+N + + +G A K ++
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE---RE 325
Query: 262 QYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI 314
+ + SY+ ++ ++ +++ NLD V DE LR+LFS++G + K+
Sbjct: 326 EELRKSYEAARQEKASKY-QGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Score = 196 (74.1 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 69/285 (24%), Positives = 128/285 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L + E L F+ G V +++V R+ T + GY ++ + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N T + G R+ W+ ++ T +F+ +L + + L +TF A + +
Sbjct: 122 LNYT-LIKGRP-CRIMWSQRDPALRK--TGQGNVFIKNLDVAIDNKALHDTFAA-FGNIL 176
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G +KGYGFV + + +A+ +NG+ + + + +G KK +
Sbjct: 177 SCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 263 YPKASYQNSQVAQSDD---DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
KA++ N V + D T+F D VT L + G+ +
Sbjct: 236 EMKANFTNIYVKNINPEVTDDEFRTLFEKYGD--VTSSSLAR-DQETGK--------SRG 284
Query: 320 CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPD 364
GFV F A +A++ LN + GQN+ + GR+ + + +
Sbjct: 285 FGFVNFTSHEDASKAVQELNEKEFHGQNLYV--GRAQKKHEREEE 327
Score = 138 (53.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 50/200 (25%), Positives = 92/200 (46%)
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
+++VG+L VT+ ML E F ++ S +V D +T R+ GY +V + ++ +A+
Sbjct: 62 SLYVGELDPSVTEAMLFELF-SQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIV 294
E+N RP RI Q+ P A + Q N VF+ NLD +
Sbjct: 121 ELNYTLIKGRPCRI---------MWSQRDP-ALRKTGQ--------GN--VFIKNLDVAI 160
Query: 295 TDEHLRELFSQYGQLVHVKIPA-----GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIR 349
++ L + F+ +G ++ K+ K GFV + A +A++ +NG L + +
Sbjct: 161 DNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVY 220
Query: 350 LSWGRSPSNKQAQPDPNQWN 369
+ ++Q++ D + N
Sbjct: 221 VGHHIPKKDRQSKFDEMKAN 240
Score = 38 (18.4 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 313 KIPAGKRCGFVQFADRSCAEEALRMLN 339
K+ K GFV FA+ A +A+ +N
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMN 454
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 176 (67.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 50/204 (24%), Positives = 96/204 (47%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E+ L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + NG R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 MNFDVI-NGRP-VRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G KGYGFV F + RA+ +NG+F + R + +G + K ++
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERG 175
Query: 263 YPKASYQNSQVAQSDDDPNNTTVF 286
++ DDD ++ F
Sbjct: 176 AWARQSTSADFKDFDDDSDDEATF 199
Score = 125 (49.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 45/164 (27%), Positives = 75/164 (45%)
Query: 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASY 268
D++T R+ GY +V + + RA+ MN + RP+RI Q+ P S
Sbjct: 36 DKVTRRSLGYAYVNYQQPVDAKRALETMNFDVINGRPVRI---------MWSQRDP--SL 84
Query: 269 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR----CGFVQ 324
+ S V VF+ NL + ++ L +FS +G ++ K+ ++ GFV
Sbjct: 85 RKSGVGN---------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVH 135
Query: 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQW 368
F + AE A+ LNG L + I + GR S+K+ + + W
Sbjct: 136 FQKQESAERAIDALNGMFLNYRKIFV--GRFKSHKEREAERGAW 177
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 190 (71.9 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 47/129 (36%), Positives = 72/129 (55%)
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQN-FRLN----WASFGAGEKRDDTPDHTIFVGDLAA 183
E I A A LQ+F T ++ R+ W + DD D IF GDL
Sbjct: 150 EAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDD--DFRIFCGDLGN 207
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
DV D +L TF ++PS + A+VV D+ TG++KG+GFV F + ++ +RAM EM+G + +
Sbjct: 208 DVNDEVLTRTFN-KFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGS 266
Query: 244 RPMRIGPAT 252
RP+++ +T
Sbjct: 267 RPIKLRKST 275
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 175 (66.7 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 40/123 (32%), Positives = 65/123 (52%)
Query: 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD 184
Y F+EF A L NG + E ++NWA+ + +K+D + +FVGDL+ +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPE 68
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244
+T ++ F A + A+VV D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 69 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 127
Query: 245 PMR 247
+R
Sbjct: 128 QIR 130
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLV 310
A N + + G++ K ++ + +Q D N+ VFVG+L +T E ++ F+ +G++
Sbjct: 28 AMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 85
Query: 311 HVKI----PAGKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIR 349
++ GK GFV F ++ AE A+ + G LGG+ IR
Sbjct: 86 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 194 (73.4 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 323 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 381
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 382 VRAMREMNGKYVGSRPIKL 400
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 188 (71.2 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 54/176 (30%), Positives = 91/176 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y +D L F G V +VI N+ T Q G+GF+ + AE+ ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTP---DHT--IFVGDLAADVTDYMLQETFRARY 198
N + NG + +N A+ G + + P D I+VG+L DV L+ F + +
Sbjct: 175 NSFEV-NGRR-LTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEH 230
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV+ +E+E A+ ++G R +++ A +
Sbjct: 231 GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/189 (23%), Positives = 90/189 (47%)
Query: 170 DTPDHT-IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
+ P+ +FVG+L DV L F + + + ++V+ +R T +++G+GFV E
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFE-QAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVG 288
+A+ + N + R + + A + S ++ P+ Y + ++VG
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRG--SRPERQPRV-YDAA-----------FRIYVG 212
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG------FVQFADRSCAEEALRMLNGTQ 342
NL V L LFS++G++V ++ + + G FVQ ++ + A+ L+G
Sbjct: 213 NLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQN 272
Query: 343 LGGQNIRLS 351
L G+ I+++
Sbjct: 273 LEGRAIKVN 281
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 146 (56.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 52/189 (27%), Positives = 91/189 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154
E + FA GE+ + V+++KQT + +G FI+F + A ++ +G + G +
Sbjct: 29 EDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAMEEMHGRCLAEGTKP 88
Query: 155 FRLNWA-SFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
++ A S +G RD D IFV + T+ L+ETF+ Y + A ++ ++
Sbjct: 89 IKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKTFTEDDLKETFKV-YGDIEYAIIIRNKT 146
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY---PKAS- 267
TG +KG G+VRF S+ +A+ + F R + P T K S Y P+ +
Sbjct: 147 TGDSKGLGYVRFHKPSQAAKAVENCDKTF---RAIIAEPRT--KNSSADNDYFSNPRTTE 201
Query: 268 YQNSQVAQS 276
+ S++ S
Sbjct: 202 HSTSELGSS 210
Score = 94 (38.1 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 297 EHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP 356
E L ++F ++G L+ V + G+ G++++ADR A +A+ ++G + G +++ P
Sbjct: 397 EVLEDVFCRFGSLIEVYLVPGRNVGYIKYADRRSAHDAIDTMHGKVVNGVKMKVMLADPP 456
Query: 357 SNK 359
+
Sbjct: 457 KEE 459
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 194 (73.4 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 194 (73.4 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 134 (52.2 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 46/172 (26%), Positives = 84/172 (48%)
Query: 95 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154
E + FA G++ + ++R+K+T + G FI+F + A R ++ +G + +
Sbjct: 66 EALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAMEEMHGRSLVPDTKP 125
Query: 155 FRLNWA-SFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL 211
++ A S +G RD D IFV + T+ L+E F+ Y + ++ ++
Sbjct: 126 IKVFIAQSRASGSHRDVEDEELTRIFVM-IPKTYTEEDLREKFKM-YGDIEYCSIIKNKT 183
Query: 212 TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQY 263
TG +KG G+VR+ S+ RA+ E + S R + P NK + S + +Y
Sbjct: 184 TGESKGLGYVRYLKPSQAARAIEECDR---SYRAILAEPK-NKSSESFEHEY 231
Score = 126 (49.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 43/160 (26%), Positives = 76/160 (47%)
Query: 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223
+ E D+ P+ +FV L D + +++E F A + + ++ D+ T ++G F++F
Sbjct: 44 SAECLDEPPNSRVFVV-LGKDAGEALIRERF-APFGDIQNIWLLRDKRTNESRGIAFIKF 101
Query: 224 GDESEQLRAMTEMNG--VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPN 281
S+ RAM EM+G + T+P+++ A ++ AS + V +D
Sbjct: 102 ARSSQACRAMEEMHGRSLVPDTKPIKVFIAQSR-----------ASGSHRDV----EDEE 146
Query: 282 NTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCG 321
T +FV + T+E LRE F YG + + I K G
Sbjct: 147 LTRIFV-MIPKTYTEEDLREKFKMYGDIEYCSIIKNKTTG 185
Score = 108 (43.1 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 299 LRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSP-- 356
L ++F ++G L+ V + AGK + +FADR+ A EA+ L+G + G +++ SP
Sbjct: 434 LEDVFCRFGNLIKVYLVAGKNVAYAKFADRASASEAITALHGKIVNGVRLKVRLADSPTE 493
Query: 357 -SNKQ 360
SNK+
Sbjct: 494 ESNKR 498
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 194 (73.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 355 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 413
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 414 VRAMREMNGKYVGSRPIKL 432
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 195 (73.7 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 49/198 (24%), Positives = 100/198 (50%)
Query: 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
K ++ +FVG+L+ +VT+ L + F ++ A+++ +R TGR++G+G+V F +
Sbjct: 270 KTEEGASANLFVGNLSWNVTEEWLHQEFE-QFGELS-ARIMTERDTGRSRGFGYVEFTNA 327
Query: 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
++ +A M R + + AT + Q + + + ++ P + T+F
Sbjct: 328 ADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLF 387
Query: 287 VGNLDSIVTDEHLRELFSQYGQLVHVKIP----AG--KRCGFVQFADRSCAEEALRMLNG 340
VGNL ++ + E+F G ++ +++P +G K G+VQ++ A +A L G
Sbjct: 388 VGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQG 447
Query: 341 TQLGGQNIRLSWGRSPSN 358
++ G+ IRL + +N
Sbjct: 448 AEIDGRPIRLDFSTPRAN 465
Score = 159 (61.0 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 51/197 (25%), Positives = 91/197 (46%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAER 138
G L++G+L + + E +L+ F GE+ A +++ + TG+ G+G++EF + A A +
Sbjct: 274 GASANLFVGNLSWNVTEEWLHQEFEQFGELSA-RIMTERDTGRSRGFGYVEFTNAADAAK 332
Query: 139 VLQTFN-------------GTPMP-NGEQNFRLNWASFGAGEKRDDT-PDH-TIFVGDLA 182
+ T P N +Q A A D T P+ T+FVG+L
Sbjct: 333 AYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLP 392
Query: 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242
+ + E F + + G ++ D +GR KG+G+V++ E +A E+ G
Sbjct: 393 FSANEDSVHEVFGPQ-GNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEID 451
Query: 243 TRPMRIGPATNKKTVSG 259
RP+R+ +T + G
Sbjct: 452 GRPIRLDFSTPRANNGG 468
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 174 (66.3 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 47/147 (31%), Positives = 78/147 (53%)
Query: 115 RNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH 174
+++ TGQ +GYGF+EF+S A+ ++ N + G+ R+N AS A K D +
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKL-YGKP-IRVNKAS--AHNKNLDVGAN 58
Query: 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234
IF+G+L ++ + +L +TF A + K++ D TG +KGY F+ F A+
Sbjct: 59 -IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 235 EMNGVFCSTRPMRIGPATNKKTVSGQQ 261
MNG + RP+ + A KK G++
Sbjct: 118 AMNGQYLCNRPITVSYAF-KKDSKGER 143
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 190 (71.9 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 54/175 (30%), Positives = 90/175 (51%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L Y ++ L F G V +VI N++T Q G+GF+ S AE ++ F
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 144 NGTPMPNGEQNFRLNWAS-FGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYP 199
N + NG +N A+ G+ +R P ++VG+L DV + L++ F + +
Sbjct: 212 NRYDL-NGRL-LTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHG 268
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A+VV DR TGR++G+GFV D E A++ ++G R +R+ A +
Sbjct: 269 KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 55/201 (27%), Positives = 98/201 (48%)
Query: 161 SFGAGEKRDDTPDHT----IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK 216
S GA +R + P+ + +FVG+LA DV L F + + + A+V+ +R T +++
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFE-QAGTVEIAEVIYNRETDQSR 191
Query: 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQS 276
G+GFV E A+ + N + R + + A + S ++ P+ Y+ +
Sbjct: 192 GFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRG--SRPERAPRV-YEPA----- 243
Query: 277 DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI----PAGKR--CGFVQFADRSC 330
V+VGNL V + L +LFS++G++V ++ G+ GFV +D
Sbjct: 244 ------FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 331 AEEALRMLNGTQLGGQNIRLS 351
EA+ L+G L G+ IR++
Sbjct: 298 LNEAISALDGQNLEGRAIRVN 318
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 194 (73.4 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 194 (73.4 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 194 (73.4 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 374 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 432
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 433 VRAMREMNGKYVGSRPIKL 451
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 194 (73.4 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 194 (73.4 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 381 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 439
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 440 VRAMREMNGKYVGSRPIKL 458
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 195 (73.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 75/285 (26%), Positives = 128/285 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+IGDL + E L F+ G V++++V R+ + GY ++ F A AER L T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 118 MNFEVI-HGRP-MRIMWSQRDPAARR--AGNGNIFIKNLDRVIDNKSVYDTF-SLFGNIL 172
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG---PATNKKTVSG 259
KV D G +KGYGFV F E A+ ++NG+ S + + +G P + G
Sbjct: 173 SCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELG 231
Query: 260 QQ--QYPKASYQNSQVAQSDDDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIP 315
+ +Y +N + D + +F G + S V + G+ P
Sbjct: 232 ESGLKYTNVFVKN--FGEHLDQEKLSAMFSKFGEITSAVV------MTDAQGK------P 277
Query: 316 AGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQ 360
G GFV FAD+ A +A+ LN + L G + +LS R+ +
Sbjct: 278 KG--FGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 59/286 (20%), Positives = 125/286 (43%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D + F+ G +++ KV + + G +GYGF+ F + A+ ++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKV 205
Query: 144 NGTPMPNGEQNF-RLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDYMLQETFRARYPST 201
NG + + + + + E + +T +FV + + L F +++
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMF-SKFGEI 264
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ 261
A V+ D G+ KG+GFV F D+ +A+ ++N ++ +K S +
Sbjct: 265 TSAVVMTDA-QGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKK-SERS 322
Query: 262 QYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA----- 316
K Y+ + + ++V N++ + D+ LR+ FS +G + K+
Sbjct: 323 AELKRKYEALK-QERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGR 381
Query: 317 GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A A+ +N +G + + ++ + +++AQ
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 427
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 46/187 (24%), Positives = 89/187 (47%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152
+D+ L+ F+ GE+ + V+ + Q G+ +G+GF+ F + A + ++ N + + +
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTD 307
Query: 153 QNF---RLNWASFGAGE--------KRDDTPDH---TIFVGDLAADVTDYMLQETFRARY 198
R S + E K++ + ++V ++ D+ D L++ F + +
Sbjct: 308 CKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS-F 366
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+ AKV++D GR+KG+GFV F E A+T+MN +P+ + A K+
Sbjct: 367 GTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425
Query: 259 GQ--QQY 263
Q QY
Sbjct: 426 AQLASQY 432
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 70/273 (25%), Positives = 128/273 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL ++E+ L F+ G V++++V R+ T GY ++ F A AER + T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+ W+ +R + IF+ +L + + + +TF + + +
Sbjct: 93 MNFEAL-HGKP-MRIMWSQRDPAMRRSGAGN--IFIKNLDKVIDNKSIYDTF-SLFGNIL 147
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV ID G +KGYGFV F E A+ ++NG+ + + + +G + + +
Sbjct: 148 SCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG 206
Query: 263 YPKASYQNSQVAQSDDDPNNTTV---FV--GNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
+ N V D N T+ F GN+ S E+ + G+
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSC-------EVMTVEGK--------S 251
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNIRL 350
K GFV FA+ AE A++ L+ + + G +++L
Sbjct: 252 KGFGFVAFANPEEAETAVQALHDSTIEGTDLKL 284
Score = 159 (61.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 62/289 (21%), Positives = 124/289 (42%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D + F+ G +++ KV ++ G +GYGF+ F + A+ +Q
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKV 180
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTI--FVGDLAADVTDYMLQETFR---ARY 198
NG + G++ F F +R+ T F + D+ +ET A++
Sbjct: 181 NGMLLA-GKKVFV---GKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 236
Query: 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+ +V+ + G++KG+GFV F + E A+ ++ +++ +K
Sbjct: 237 GNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSE 294
Query: 259 GQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA-- 316
+ K Q+ A+ ++V NLD V D+ L++ F YG + K+
Sbjct: 295 RHAELKKKHEQHK--AERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE 352
Query: 317 ---GKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A A+ +N + + + ++ + +++AQ
Sbjct: 353 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQ 401
Score = 134 (52.2 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 54/193 (27%), Positives = 87/193 (45%)
Query: 87 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ----- 141
GD ++ ET L FA G + + +V+ + G+ +G+GF+ F + AE +Q
Sbjct: 221 GD--HYNKET-LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDS 275
Query: 142 TFNGTPMP--------NGEQNFRLNWA-SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
T GT + E++ L E+ ++V +L V D L++
Sbjct: 276 TIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKK 335
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F + Y + AKV+ D GR+KG+GFV F E A+TEMN ++P+ + A
Sbjct: 336 QFES-YGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 393
Query: 253 NKKTVSGQ--QQY 263
K+ Q QY
Sbjct: 394 RKEDRRAQLASQY 406
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 71/295 (24%), Positives = 134/295 (45%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +++ +L + L F G +V+ KV + G+ GYGF++F A +
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDH---TIFVGDLAADVTDYMLQETFR 195
QT N T + + E G K+ D P+ +++ +L ADV++ +L+E F
Sbjct: 170 QTLNSTIVADKE-------IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKF- 221
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + D +GY FV F + + RA +NG ++ + +G A KK
Sbjct: 222 AEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA-QKK 279
Query: 256 TVSGQ---QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHV 312
Q +Q+ + + +A+ + ++V N++ VT+E LR+ FSQ G +
Sbjct: 280 AEREQLLREQFKEKHEEQKMIAKVSN------IYVKNVNVAVTEEELRKHFSQCGTITST 333
Query: 313 KIPA---GKR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K+ GK GFV F+ A +A++ +G G+ + ++ + +++ Q
Sbjct: 334 KLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQ 388
Score = 178 (67.7 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 51/198 (25%), Positives = 99/198 (50%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L FA + +V++ ++ +G+ YG+ F+SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + NG+ R+ W+ +R+ + +FV +L VT+ +LQ+ F+ ++ +
Sbjct: 85 KNNSLL-NGKM-IRVMWSVRAPDARRNGVGN--VFVKNLPESVTNAVLQDMFK-KFGNIV 139
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT--VSGQ 260
KV G+++GYGFV+F E A+ +N + + + +G KKT V +
Sbjct: 140 SCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM-KKTDRVKPE 197
Query: 261 QQYPKASYQNSQVAQSDD 278
++Y +N S+D
Sbjct: 198 EKYTNLYMKNLDADVSED 215
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 136 (52.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
+F+GDL VT+ L+ F+ +YPS AKV +D +T ++ G+G++ F D+ E +AM E
Sbjct: 93 LFIGDLHETVTEETLKGIFK-KYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEE 151
Query: 236 MNGVFCSTRPMRIGPATNKKT 256
+N + + +RI P+ T
Sbjct: 152 LNYTKVNGKEIRIMPSLRNTT 172
Score = 103 (41.3 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 283 TTVFVGNL---DSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLN 339
T VF NL + ++T + FS+YG+++ K+ + K GFV F D A ++M N
Sbjct: 179 TNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFEDEKTARNVIKMYN 238
Query: 340 GTQLGGQNI 348
T G+ I
Sbjct: 239 NTSFFGKKI 247
Score = 69 (29.3 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 18/88 (20%), Positives = 42/88 (47%)
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRC---- 320
K S N + +++ + ++F+ NL +I T + + FS+ G + + + +
Sbjct: 285 KHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW 344
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNI 348
FV + + S +E+A++ N G+ +
Sbjct: 345 AFVTYKNSSDSEKAIKRYNNFYFRGKKL 372
Score = 64 (27.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 283 TTVFVGNLDSIVTDEHLRELFSQYG-QLVHVKIP-----AGKRCGFVQFADRSCAEEALR 336
+T+F+ NL ++ E L+ L Q + ++I + GF++F + A
Sbjct: 393 STLFLENLSAVCNKEFLKYLCHQENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFN 452
Query: 337 MLNGTQLGGQNIRLSWGR 354
LN +GG + SW R
Sbjct: 453 FLNNRLVGGSIVTTSWER 470
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 190 (71.9 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E T+++G L + +D+ +L F G +V +VI + Q+G+ +GYG+++F + A+
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Query: 140 LQTFNGTPMPNGEQ-NFRLN---------WASFGAGEKRDDT--PDHTIFVGDLAADVTD 187
+ NGT +G N L+ +A AG D P T+FVG+L+ + T+
Sbjct: 321 VAA-NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATE 379
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L F + ++ D +GR KG+G+V F D + + EMNG F + RP R
Sbjct: 380 DDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHFIAGRPCR 437
Query: 248 IGPATNKKTVSGQQ 261
+ +T +T G +
Sbjct: 438 LDFST-PRTGGGSR 450
Score = 187 (70.9 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 58/192 (30%), Positives = 96/192 (50%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+D T+FVG L+ +V D L + F Y + GA+V++D +GR+KGYG+V F +
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFE-EYGTIVGARVIMDGQSGRSKGYGYVDF-ETP 314
Query: 228 EQLRAMTEMNGVF-CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVF 286
E +A NG R + + +N + + Q P A + +P++T VF
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLD-LSNPRPANPQ---PYAQQRAGNFGDQLSEPSDT-VF 369
Query: 287 VGNLDSIVTDEHLRELFSQYGQLVHVKIP----AG--KRCGFVQFADRSCAEEALRMLNG 340
VGNL T++ L F G + +++P +G K G+V F+D A++ + M NG
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM-NG 428
Query: 341 TQLGGQNIRLSW 352
+ G+ RL +
Sbjct: 429 HFIAGRPCRLDF 440
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 48/204 (23%), Positives = 94/204 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G KGYGFV F + RA+ MNG+F + R + +G + K ++
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERG 175
Query: 263 YPKASYQNSQVAQSDDDPNNTTVF 286
++ V ++D + F
Sbjct: 176 AWARQSTSADVKDFEEDTDEEATF 199
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 43/168 (25%), Positives = 76/168 (45%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
++ D++T R+ GY +V + + RA+ +N RP+RI Q+ P
Sbjct: 32 RICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRI---------MWSQRDP 82
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR----C 320
S + S V VF+ NL + ++ L +FS +G ++ K+ ++
Sbjct: 83 --SLRKSGVGN---------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGY 131
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQW 368
GFV F + AE A+ +NG L + I + GR S+K+ + + W
Sbjct: 132 GFVHFQKQESAERAIDAMNGMFLNYRKIFV--GRFKSHKEREAERGAW 177
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 43/139 (30%), Positives = 71/139 (51%)
Query: 85 WIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144
++G+L + E + F+ G K+I + T + Y F+EF A L N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 145 GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204
G + E ++NWA+ + +K+D + +FVGDL+ ++T ++ F A + A
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDA 116
Query: 205 KVVIDRLTGRTKGYGFVRF 223
+VV D TG++KGYGFV F
Sbjct: 117 RVVKDMATGKSKGYGFVSF 135
Score = 111 (44.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 286 FVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR--CGFVQFADRSCAEEALRMLNG 340
+VGNL VT+ + +LFSQ G + K+ AG C FV+F + A AL +NG
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNG 60
Query: 341 TQLGGQNIRLSWGRSPSNKQ 360
++ G+ ++++W +PS+++
Sbjct: 61 RKIMGKEVKVNWATTPSSQK 80
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 192 (72.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 58/191 (30%), Positives = 90/191 (47%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +F+ L A T+ L E F Y K A VV+D T ++KGYGFV F D +
Sbjct: 35 PRRELFIRSLPASATNESLAEHFSQSYV-IKHAVVVVDPKTKQSKGYGFVTFADVEDAKA 93
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQ---QQYPKASY--QNSQVAQSDDDPNNTTVF 286
A+ E+NG + +++ A + V + + P A + Q Q D +
Sbjct: 94 ALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLI 153
Query: 287 VGNLD-SIVTDEHLRELFSQYGQLVHVKIPA-GKRC---GFVQFADRSCAEEALRMLNGT 341
V NL SI T E L F +G++ +V +P G + GFV + AE+AL +NG
Sbjct: 154 VRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNGK 213
Query: 342 QLGGQNIRLSW 352
++ G+ + + W
Sbjct: 214 EVDGRTLAVDW 224
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 190 (71.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 65/271 (23%), Positives = 122/271 (45%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++G+L ++E L F+ G+V +++V R+ + + GY ++ + E+ ++
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ W+ +R D IF+ +L + + L +TF A +
Sbjct: 113 LNYNPIEG--RPCRIMWSQRDPSARRSG--DGNIFIKNLHPAIDNKALHDTFSA-FGKIL 167
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G++K +GFV + A+ +NG+ + R + +G +KK + +
Sbjct: 168 SCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 263 YPKASYQNSQVAQSD---DDPNNTTVF--VGNLDSIVTDEHLRELFSQYGQLVHVKIPAG 317
KA++ N V D + + +F G + SI ++ Q G+
Sbjct: 227 EMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK------DQDGK--------S 272
Query: 318 KRCGFVQFADRSCAEEALRMLNGTQLGGQNI 348
K GFV F D A +A+ LN ++ GQ I
Sbjct: 273 KGFGFVNFEDHESAVKAVEELNDKEINGQKI 303
Score = 181 (68.8 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 62/287 (21%), Positives = 135/287 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++I +L +D L+ F+ G++++ KV + + GQ + +GF+ + + AE ++
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPST 201
NG + + E + + K ++ + I+V ++ + ++ ++ F P
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFS---PFG 257
Query: 202 KGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260
K + +++ G++KG+GFV F D ++A+ E+N + + + +G A K+ +
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE---R 314
Query: 261 QQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKI---PAG 317
+ K Y+ ++ + +FV NLD + E L E F +G + K+ AG
Sbjct: 315 LEELKKQYEAVRLEKLAKY-QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAG 373
Query: 318 KR--CGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQ 362
K GFV F A +A+ +N + G+ + ++ + +++Q
Sbjct: 374 KSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 136 (52.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 51/196 (26%), Positives = 92/196 (46%)
Query: 88 DLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147
DL Y +E++ F+ G++ ++ + Q G+ +G+GF+ F A + ++ N
Sbjct: 241 DLNY-SEESF-EKLFSPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 148 MPNGEQNF---------RLNWAS--FGAG--EKRDDTPDHTIFVGDLAADVTDYMLQETF 194
+ NG++ + RL + A EK +FV +L + L+E F
Sbjct: 298 I-NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEF 356
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+ + + AKV++D G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 357 KP-FGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Query: 255 KTVSGQ-QQYPKASYQ 269
Q +Q +A Q
Sbjct: 415 DVRRSQLEQQIQARNQ 430
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 191 (72.3 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 63/241 (26%), Positives = 111/241 (46%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VF--C 241
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG +F C
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 242 STRP-----MRIGPAT-NKKTVSGQQQYPKASYQNSQVAQSDDDPN----NTTVFVGNLD 291
+ +++ P+ N + + N+ + ++++ N N F GN++
Sbjct: 202 KIKVSKSNGIKMNPSNINNNNNNNVNHNINHNVNNNNIVNNNNNMNAIYYNNKNFDGNMN 261
Query: 292 S 292
+
Sbjct: 262 N 262
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 191 (72.3 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 63/241 (26%), Positives = 111/241 (46%)
Query: 82 RTLWIGDLQYW----MDETYLNTC--FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
+TLW+GDL+ +DE Y+ C + +++ +K+ + K + Q Y FIEF +
Sbjct: 23 KTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEFSTYEV 81
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFG------AGEKR-----DDTPDHTIFVGDLAAD 184
A+ + NG +P F+LNWA + EK DD ++I+VG L +
Sbjct: 82 AKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVGSLPIN 141
Query: 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VF--C 241
T ++ F Y S K++ + K Y F+ F + E LRA+TEMNG +F C
Sbjct: 142 TTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGYIFKGC 201
Query: 242 STRP-----MRIGPAT-NKKTVSGQQQYPKASYQNSQVAQSDDDPN----NTTVFVGNLD 291
+ +++ P+ N + + N+ + ++++ N N F GN++
Sbjct: 202 KIKVSKSNGIKMNPSNINNNNNNNVNHNINHNVNNNNIVNNNNNMNAIYYNNKNFDGNMN 261
Query: 292 S 292
+
Sbjct: 262 N 262
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 139 (54.0 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA 183
GYGF+ +I AE+ + T NG + + ++++A + RD ++V L
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIRDAN----LYVSGLPK 174
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-- 241
+T L++ F ++Y +++++D++TG ++G GF+RF E A+ +NG
Sbjct: 175 TMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 233
Query: 242 STRPMRI----GPA--TNKKTVSGQQQYPKASYQN--SQVAQ 275
+T P+ + P+ TN+ +S Q P Y +Q AQ
Sbjct: 234 ATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQ 275
Score = 113 (44.8 bits), Expect = 0.00094, P = 0.00093
Identities = 67/246 (27%), Positives = 110/246 (44%)
Query: 142 TFNGTPMPNGEQNFRLNWAS-FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
T N T NG N +S +G D + + V L ++T L+ F +
Sbjct: 20 TCNNTA--NGPTTINNNCSSPVDSGNTEDSKTN--LIVNYLPQNMTQEELKSLFGS-IGE 74
Query: 201 TKGAKVVIDRLTGRT-KGYGFVRFGDES--EQLRAM-TEMNGVFCSTRPMRIG------P 250
+ K+V D++TG + Y F D S E+ R + +E+ + + + G P
Sbjct: 75 IESCKLVRDKITGNQFREY----FTDSSLFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDP 130
Query: 251 ATNKK---TVSG---QQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFS 304
+K T++G Q + K SY A S D N ++V L +T + L +LFS
Sbjct: 131 KDAEKAINTLNGLRLQTKTIKVSYARPSSA-SIRDAN---LYVSGLPKTMTQKELEQLFS 186
Query: 305 QYGQLVHVKIPA------GKRCGFVQFADRSCAEEALRMLNGTQLGG--QNIRLSWGRSP 356
QYG+++ +I + GF++F R AEEA++ LNG + G + I + + +P
Sbjct: 187 QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNP 246
Query: 357 SNKQAQ 362
S K Q
Sbjct: 247 SQKTNQ 252
Score = 100 (40.3 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +LA D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 319 IFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 377
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG R +++ TNK
Sbjct: 378 LNGYRLGDRVLQVSFKTNK 396
Score = 93 (37.8 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++ L M + L F+ G ++ +++ ++ TG G GFI F R AE ++
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 227 NGQKPPGATEPITVKFAN 244
Score = 74 (31.1 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ + ++K
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 52 (23.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTG-QIEGY 125
M + L + F GE+ + K++R+K TG Q Y
Sbjct: 60 MTQEELKSLFGSIGEIESCKLVRDKITGNQFREY 93
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 167 (63.8 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 48/204 (23%), Positives = 94/204 (46%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
KV D G KGYGFV F + RA+ MNG+F + R + +G + K ++
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERG 175
Query: 263 YPKASYQNSQVAQSDDDPNNTTVF 286
++ V ++D + F
Sbjct: 176 AWARQSTSADVKDFEEDTDEEATF 199
Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 43/164 (26%), Positives = 74/164 (45%)
Query: 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASY 268
D++T R+ GY +V + + RA+ +N RP+RI Q+ P S
Sbjct: 36 DKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRI---------MWSQRDP--SL 84
Query: 269 QNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR----CGFVQ 324
+ S V VF+ NL + ++ L +FS +G ++ K+ ++ GFV
Sbjct: 85 RKSGVGN---------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVH 135
Query: 325 FADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQW 368
F + AE A+ +NG L + I + GR S+K+ + + W
Sbjct: 136 FQKQESAERAIDAMNGMFLNYRKIFV--GRFKSHKEREAERGAW 177
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 143 (55.4 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 93 MDETYLNTCFAHTGEVVAVKVIRNKQTG-QIE----------GYGFIEFISRAGAERVLQ 141
M + L + F+ GEV + K+IR+K G ++ GYGF+ +++ AER +
Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAIN 90
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPST 201
T NG + + + ++++A + D +++ L +T +++ F +
Sbjct: 91 TLNGLRLQS--KTIKVSFAR----PSSESIKDANLYISGLPRTMTQKDVEDMFLP-FGHI 143
Query: 202 KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
++V++D+ TG ++G F+RF SE A+ NG
Sbjct: 144 INSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 90 (36.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L+I L M + + F G ++ +V+ ++ TG G FI F R+ AE + +F
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Query: 144 NGTPMPNGEQNFRLNWAS 161
NG P + + +A+
Sbjct: 179 NGHKPPGSSEPITVKFAA 196
Score = 88 (36.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
IFV +L D + +L + F + + KV+ D T + KG+GFV + E A+
Sbjct: 257 IFVYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 315
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG + +++ T+K
Sbjct: 316 LNGYRLGDKTLQVSFKTSK 334
Score = 83 (34.3 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 285 VFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAG---KRC---GFVQFADRSCAEEALRML 338
+FV NL + L ++F +G + +VK+ +C GFV + A A+ L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 339 NGTQLGGQNIRLSWGRSPSNK 359
NG +LG + +++S+ S S+K
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 184 (69.8 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 61/237 (25%), Positives = 105/237 (44%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV V V +++ T + YGFIE+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + +G+ R+N AS +K+ +F+G+L DV + +L +TF A
Sbjct: 86 LNMIKL-HGKP-IRVNKAS---QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
K++ D TG ++G+GF+ + A+ M G + S R + + A K T +
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHG 200
Query: 263 YPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR 319
P + + +T +G S L F+ G + V IPA ++
Sbjct: 201 TPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFAN-GSMQPVPIPAPRQ 256
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 49/194 (25%), Positives = 86/194 (44%)
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D T++VG L A +++ +L E F P V DR+T + YGF+ + E + A
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVN-VYVPKDRVTNLHQNYGFIEYRSEEDADYA 82
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDS 292
+ +N + +P+R+ A+ K +S D N +F+GNLD
Sbjct: 83 IKVLNMIKLHGKPIRVNKASQDK-------------------KSLDVGAN--LFIGNLDP 121
Query: 293 IVTDEHLRELFSQYGQLV-HVKI---P-AG--KRCGFVQFADRSCAEEALRMLNGTQLGG 345
V ++ L + FS +G + + KI P G + GF+ + ++ A+ + G L
Sbjct: 122 DVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSN 181
Query: 346 QNIRLSWGRSPSNK 359
+ I +S+ K
Sbjct: 182 RQITVSYAYKKDTK 195
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 177 (67.4 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 49/176 (27%), Positives = 87/176 (49%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++IG L T N F GE+ ++R++ TGQ G+GFI F + ++V++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 144 NGTPMPNGEQ-NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
T + NG+Q + G + D IFVG + + VT+ L++ F A+Y +
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF-AKYGNVV 136
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258
+V+ D T R++G+GFV F E +++ N + + + I A KK+++
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLN 192
Score = 43 (20.2 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 352 WGRSPSNKQAQPDPNQWNAGYYGYAQG---------YENYG 383
+G P ++ P AG YGY +G Y NYG
Sbjct: 225 YGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYG 265
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 165 (63.1 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P+H +FVG+L DV D L + F + YPS KVV DR G+T+G+GFV F D + L
Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFL 84
Query: 231 RAMTEMNGVFCSTRPMRIGPATN 253
+A E NG + +RP+++ AT+
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATS 107
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 279 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPA---GKR--CGFVQFADRSCAEE 333
DPN+ +FVGNL + V DE L + FS+Y LV K+ GK GFV F D +
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLK 85
Query: 334 ALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWN 369
A R NG +G + ++LS R+ S+ + PN+ N
Sbjct: 86 AWREKNGKYIGSRPVKLS--RATSDVK----PNEVN 115
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 165 (63.1 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 162
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 43/168 (25%), Positives = 76/168 (45%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
++ D++T R+ GY +V + + RA+ +N RP+RI Q+ P
Sbjct: 32 RICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRI---------MWSQRDP 82
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR----C 320
S + S V VF+ NL + ++ L +FS +G ++ K+ ++
Sbjct: 83 --SLRKSGVGN---------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGY 131
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQW 368
GFV F + AE A+ +NG L + I + GR S+K+ + + W
Sbjct: 132 GFVHFQKQESAERAIDAMNGMFLNYRKIFV--GRFKSHKEREAERGAW 177
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 184 (69.8 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 64/221 (28%), Positives = 98/221 (44%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D+ +FVG ++ + + L+E F Y A V+ D+LTGR +G+GFV F D S
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHF-TNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTT-VFVG 288
R + E + + TR + + A +++ QQ + N+ + D N T +FVG
Sbjct: 61 DRVLQEKHSI--DTREVDVKRAMSREE---QQVSGRTGNLNTSRSSGGDAYNKTKKIFVG 115
Query: 289 NLDSIVTDEHLRELFSQYGQLVHVKI---PAGKR---CGFVQFADRSCAEEALRMLNGTQ 342
L +TDE R+ F YG + V I A R GFV F + L
Sbjct: 116 GLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHD 174
Query: 343 LGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYG 383
L G+ + + + K A P + G G + GY+ YG
Sbjct: 175 LSGKQVEV---KRALPKDANPGGGGRSMGGGG-SGGYQGYG 211
Score = 150 (57.9 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 49/157 (31%), Positives = 73/157 (46%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G + + DE L F + GEV V+R+K TG+ G+GF+ F + +RVLQ
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 144 NGTP---------MPNGEQNF-----RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
+ M EQ LN + G+ + T IFVG L +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKK--IFVGGLPPTLTDEE 125
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
++ F P T A ++ D+ T R +G+GFV F E
Sbjct: 126 FRQYFEVYGPVTDVA-IMYDQATNRPRGFGFVSFDSE 161
Score = 59 (25.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 341 TQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAAAP--QDPS 393
T + G S G +P N P + + YG + YG AAP Q PS
Sbjct: 281 TNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPS 335
Score = 43 (20.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 353 GRSPSNKQAQPDPNQWNAGYYGYAQGYENYGYAAA 387
G +P + NQ GY GY+ YG AA
Sbjct: 326 GAAPPTQSPSGYSNQ-GYGYGGYSGSDSGYGNQAA 359
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 164 (62.8 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G ++++++ R+K T + GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+ W+ ++ + +F+ +L + + L F A + +
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVGN--VFIKNLGKTIDNKALYNIFSA-FGNIL 117
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
KV D G KGYGFV F + RA+ MNG+F + R + +G
Sbjct: 118 SCKVACDE-KG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 162
Score = 123 (48.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 43/168 (25%), Positives = 77/168 (45%)
Query: 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYP 264
++ D++T R+ GY +V + + RA+ +N RP+RI Q+ P
Sbjct: 32 RICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRI---------MWSQRDP 82
Query: 265 KASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKR----C 320
S + S V VF+ NL + ++ L +FS +G ++ K+ ++
Sbjct: 83 --SLRKSGVGN---------VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGY 131
Query: 321 GFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQW 368
GFV F + AE A+ ++NG L + I + GR S+K+ + + W
Sbjct: 132 GFVHFQKQESAERAIDVMNGMFLNYRKIFV--GRFKSHKEREAERGAW 177
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P H +FVG+L D D +L+E F ++YPS V IDR T + KG+GFV FG + L
Sbjct: 53 PKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYL 111
Query: 231 RAMTEMNGVFCSTRPMRIGPATN---KKT 256
A EMNG + P+++ A + KKT
Sbjct: 112 HAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 172 PDH-TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230
P H +FVG+L D D +L+E F ++YPS V IDR T + KG+GFV FG + L
Sbjct: 53 PKHFRLFVGNLGPDGNDELLKEAF-SKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYL 111
Query: 231 RAMTEMNGVFCSTRPMRIGPATN---KKT 256
A EMNG + P+++ A + KKT
Sbjct: 112 HAFQEMNGKYIGQHPVQLKRAESSVPKKT 140
WARNING: HSPs involving 960 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 413 316 0.00082 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1210
No. of states in DFA: 614 (65 KB)
Total size of DFA: 238 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.59u 0.12s 26.71t Elapsed: 00:00:01
Total cpu time: 26.67u 0.12s 26.79t Elapsed: 00:00:01
Start: Fri May 10 03:22:39 2013 End: Fri May 10 03:22:40 2013
WARNINGS ISSUED: 2